BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005344
(701 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359486767|ref|XP_002271948.2| PREDICTED: uncharacterized protein ycf45-like [Vitis vinifera]
Length = 687
Score = 1032 bits (2668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/701 (77%), Positives = 594/701 (84%), Gaps = 14/701 (1%)
Query: 1 MITLNSRFMLIDINSSWHSANQAPISTLKYIQNTNFITSFSSSFRRTRRARKTFVSQKPT 60
M +L+SR +LID++SSWHSANQ PIST ++QNT FI+S SSSFRRTR S K +
Sbjct: 1 MRSLSSRVVLIDLHSSWHSANQIPISTFAFLQNTGFISSVSSSFRRTR----GIASAKSS 56
Query: 61 PPSIHPPTVRRPSDWAPPRNGSVSDSPNSASTSRSGADIELELFLELLPSRMRRELCMHR 120
P I P +RRP + P NGS S+SPNS STSRS A EL++FLEL+P RMR+EL H
Sbjct: 57 IPLIRSPGIRRPVERFSPGNGSTSNSPNSPSTSRSEALSELDMFLELVPLRMRKELFGHA 116
Query: 121 ELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLH 180
E+GDLIEVVMDLGRKPLARFPSGDW+ISEQIVK EDL+HAISKVG+FSDDNRSGI+ SLH
Sbjct: 117 EIGDLIEVVMDLGRKPLARFPSGDWLISEQIVKLEDLQHAISKVGEFSDDNRSGINHSLH 176
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARM 240
RISAIRNRKMQ+IGLTCRVGR+V+GSAEI+ DLVEGGGSILVIGPPGVGKTTLIREIARM
Sbjct: 177 RISAIRNRKMQIIGLTCRVGRSVSGSAEIVRDLVEGGGSILVIGPPGVGKTTLIREIARM 236
Query: 241 LADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETII 300
LAD+HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV NVNMQH+VMIEAVENHMPETII
Sbjct: 237 LADEHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVSNVNMQHNVMIEAVENHMPETII 296
Query: 301 IDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKK 360
IDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI+KNPSLQILVGGIESVTLGDEEA+K
Sbjct: 297 IDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIMKNPSLQILVGGIESVTLGDEEARK 356
Query: 361 RKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHE 420
RKVQKTILERKGPPTFTCAVEMISRT CRVHHRLDATVDAILAGK PLFE+R MDAE +
Sbjct: 357 RKVQKTILERKGPPTFTCAVEMISRTHCRVHHRLDATVDAILAGKSPLFELRHMDAEANI 416
Query: 421 PLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPV 480
K T EES +T KS +ESDE + ++ ++ S + V K S V
Sbjct: 417 SQKPTLASEKKLLEESRIT----KSEVVESDE--KHVHHSPSRSNPWSTDKPVSKQSSAV 470
Query: 481 CVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLP 540
CVYTY+ILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSE+KQ PWIRGVAKFHQLP
Sbjct: 471 CVYTYKILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSELKQYPWIRGVAKFHQLP 530
Query: 541 VFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEE 600
VFVIKSNTMAQMVKAVRMILG+ESFG+ K P KS+ DIEIEDDAPKRKP+LEEIDALEE
Sbjct: 531 VFVIKSNTMAQMVKAVRMILGIESFGSKPKKPLKSSFDIEIEDDAPKRKPSLEEIDALEE 590
Query: 601 VRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRLNK 660
VRLAIEYIVIPGGE VELLPRRS+I+ARQLELVESYQLA ENSGTELNPRLQILPLR NK
Sbjct: 591 VRLAIEYIVIPGGEPVELLPRRSDIIARQLELVESYQLAVENSGTELNPRLQILPLRSNK 650
Query: 661 NKKSFSNSSNSGSTSPKETLGKSLTSSDAGTSFTRLPFLPE 701
+ + +S S+ KET K LT+ GTS RLP LPE
Sbjct: 651 K----TTNKSSKSSLQKETNVKPLTTGGGGTSVARLPLLPE 687
>gi|255585357|ref|XP_002533375.1| ATP binding protein, putative [Ricinus communis]
gi|223526782|gb|EEF29006.1| ATP binding protein, putative [Ricinus communis]
Length = 693
Score = 1028 bits (2659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/705 (75%), Positives = 588/705 (83%), Gaps = 16/705 (2%)
Query: 1 MITLNSRFMLIDINSSWHSANQAPISTLKYIQNTNFITSFSSSFRRTRRA-RKTFVSQKP 59
M ++SRF+LIDI SS +SA+Q P+STL Y+ ++FSSSFRRTR RK S+
Sbjct: 1 MRAMSSRFLLIDIQSSCYSAHQIPLSTLTYL------STFSSSFRRTRGVHRKISSSKSS 54
Query: 60 TPPSIHPPTVRRPSDWAPPRNGSVSDSPNSASTSRSGADI---ELELFLELLPSRMRREL 116
TP +IH P VRRP+D RNGS S+S NS S + + EL+ FLELLP RMRREL
Sbjct: 55 TPSAIHTPEVRRPTDRYKIRNGSQSESGNSVLVSTGSSSVPNSELDSFLELLPLRMRREL 114
Query: 117 CMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGID 176
C E+G+LIEVV+DLGRKPLARFPSGDWVISEQ VKHEDLKHAISKVGDFSDDNRSGI+
Sbjct: 115 CNQNEIGELIEVVLDLGRKPLARFPSGDWVISEQPVKHEDLKHAISKVGDFSDDNRSGIN 174
Query: 177 RSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIRE 236
SLHRISAIRNRKMQ+IGLTCRVGRAV+GSAEII DLVEGGGSIL IGPPGVGKTTLIRE
Sbjct: 175 SSLHRISAIRNRKMQIIGLTCRVGRAVSGSAEIIRDLVEGGGSILAIGPPGVGKTTLIRE 234
Query: 237 IARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMP 296
IARMLADD KRVVIVDTSNEIGGDGDVPH+GIGRARRMQVPNVNMQH+VMIEAVENHMP
Sbjct: 235 IARMLADDQGKRVVIVDTSNEIGGDGDVPHAGIGRARRMQVPNVNMQHNVMIEAVENHMP 294
Query: 297 ETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356
+ IIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI+KNPSLQILVGGIESVTLGDE
Sbjct: 295 QAIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIIKNPSLQILVGGIESVTLGDE 354
Query: 357 EAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDA 416
EA+KRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD IL+GK PLFE+R MD
Sbjct: 355 EARKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDTILSGKTPLFEIRHMDT 414
Query: 417 EHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKP 476
E + LK TP+ + EESE I + K E++SDE E+ S FK + V++
Sbjct: 415 EGDDSLKFTPMNGNNLVEESEPVIIK-KGDEIDSDE--ENGYTPSIYFKKHKTRGYVKQR 471
Query: 477 SPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKF 536
S PVC+YTY+ILEA LLQVA VMGLEDEI++TDDI TADAILASSSEMKQNPWIRGVAKF
Sbjct: 472 SSPVCIYTYKILEAHLLQVAMVMGLEDEIELTDDIETADAILASSSEMKQNPWIRGVAKF 531
Query: 537 HQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEID 596
H LPVFVIKSNT+AQMVKA+RMILG ESFG+ K P K++ DIEIEDDAPKRKPTLEEID
Sbjct: 532 HHLPVFVIKSNTLAQMVKAIRMILGFESFGSKLKQPLKNSLDIEIEDDAPKRKPTLEEID 591
Query: 597 ALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPL 656
ALEEVRLAIEYIVIPGGE VELLPR SEI+ARQLELVESYQL AENSGTEL+PRLQILPL
Sbjct: 592 ALEEVRLAIEYIVIPGGEPVELLPRCSEIIARQLELVESYQLTAENSGTELSPRLQILPL 651
Query: 657 RLNKNKKSFSNSSNSGSTSPKETLGKSLTSSDAGTSFTRLPFLPE 701
R NK S S S +TS KET KSLT GTS +RLPFLP+
Sbjct: 652 RTNKKT---SKSQKSCATSEKETNSKSLTGMGGGTSVSRLPFLPQ 693
>gi|449465306|ref|XP_004150369.1| PREDICTED: uncharacterized protein ycf45-like [Cucumis sativus]
gi|449513026|ref|XP_004164207.1| PREDICTED: uncharacterized protein ycf45-like [Cucumis sativus]
Length = 733
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/750 (68%), Positives = 578/750 (77%), Gaps = 66/750 (8%)
Query: 1 MITLNSRFMLIDINSSWHSANQAPISTLKYIQNTNFITSFSSSFRRTRRARKTFVSQKPT 60
M LNS F+LID++SSWHSANQ PISTL Y+QN++ ++ F SSFRRTR RK +S + +
Sbjct: 1 MRALNSHFLLIDLHSSWHSANQIPISTLAYLQNSHSVSKFPSSFRRTRPVRKGVISSESS 60
Query: 61 PPSIHPPTVRRPS-DWAPPRNGSVSDSPNSAST---------SRSGADIELELFLELLPS 110
PS P +RRPS D NG +++ NS S+ S+S A ELE+F+ELLPS
Sbjct: 61 APSFRSPEIRRPSSDRLFSGNGLLTNLSNSNSSLDLDSASTSSQSKATAELEMFIELLPS 120
Query: 111 RMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDD 170
RMR+EL H E +LIEVV+DLGR P+ARFPSGDW ISE+ VKHEDL HAI+KVGDFSDD
Sbjct: 121 RMRKELRSHTEFRELIEVVLDLGRNPIARFPSGDWPISEEPVKHEDLSHAIAKVGDFSDD 180
Query: 171 NRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGK 230
NRSG+DRSLHRISAIRNRKMQ+IGLTCRVGR+++GSAEII DLVEGGGSILVIGPPGVGK
Sbjct: 181 NRSGMDRSLHRISAIRNRKMQIIGLTCRVGRSISGSAEIIRDLVEGGGSILVIGPPGVGK 240
Query: 231 TTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEA 290
TTLIREIARMLADDH KRVVIVDTSNEIGGDGDVPH+GIG ARRMQVPNVNMQH+VMIEA
Sbjct: 241 TTLIREIARMLADDHKKRVVIVDTSNEIGGDGDVPHAGIGSARRMQVPNVNMQHTVMIEA 300
Query: 291 VENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIES 350
VENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHG+TIDNI+KNPSLQILVGGIES
Sbjct: 301 VENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGITIDNIIKNPSLQILVGGIES 360
Query: 351 VTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFE 410
VTLGDEEA+KRKVQKTILERKGP TFTCAVEMIS+TECRVHHRLD TVDAILAGK PLFE
Sbjct: 361 VTLGDEEARKRKVQKTILERKGPSTFTCAVEMISKTECRVHHRLDTTVDAILAGKPPLFE 420
Query: 411 VRQMDAEHHEPLKVTPI------LRGSYP-EESELTINED---KSAEMES---------- 450
VR +D + + +P L P ++S + + D K +ME+
Sbjct: 421 VRHVDTYANHSMGSSPNHVKSLGLHERLPSKDSNIIAHSDSNLKVRQMETYANHSVESSP 480
Query: 451 -------------------DEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEAD 491
D DS+ ED F ++ RSV K S PV VY+Y+ILE+D
Sbjct: 481 KHETILQGRVNLKDLNVIADNDSDIEDVG--HFSHQPKSRSVSKKSSPVQVYSYKILESD 538
Query: 492 LLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQ 551
LLQVA+V+ LE+EIDVTDDI TADAILA+S EMKQNPWIR VAKFH LPVFVIKSNTMAQ
Sbjct: 539 LLQVAQVLELENEIDVTDDIETADAILATSYEMKQNPWIRSVAKFHHLPVFVIKSNTMAQ 598
Query: 552 MVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIP 611
MVKA+RMI+ ++S T SK P K T DI IEDDAPKRKP+LEEIDALEEVRLAIEYIVIP
Sbjct: 599 MVKAIRMIIKIDSSST-SKKPRK-TPDIVIEDDAPKRKPSLEEIDALEEVRLAIEYIVIP 656
Query: 612 GGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRLNKNKKSFSNSSNS 671
GGE VELLPR SEIVARQLELVESYQLAAE S ++ NPRLQILP+RL KNK
Sbjct: 657 GGEPVELLPRCSEIVARQLELVESYQLAAEYSSSDPNPRLQILPVRL-KNKT-------- 707
Query: 672 GSTSPKETLGKSLTSSDAGTSFTRLPFLPE 701
PK L KS+ D GT +RLP LPE
Sbjct: 708 -LKEPKSIL-KSII--DEGTGISRLPLLPE 733
>gi|356575518|ref|XP_003555887.1| PREDICTED: uncharacterized protein ycf45-like [Glycine max]
Length = 667
Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/703 (71%), Positives = 561/703 (79%), Gaps = 38/703 (5%)
Query: 1 MITLNSRFMLIDINSSWHSANQAPISTLKYIQNTNFITSFSSSFRRTRRARKTFVSQKPT 60
M LNS +L+D+ HS + P STL Y++N+ FI+S RR+ +T + +
Sbjct: 1 MRALNSHVLLVDL----HSHHHVPTSTLSYLRNSRFISSLR------RRSPRTGIRCTAS 50
Query: 61 PPSIHPPTVRRPSDWAPPRNGSVSDSPNSASTSRSGADIELELFLELLPSRMRRELCMHR 120
P +RRPSD GS S STSR +L LFLELLP +MRREL HR
Sbjct: 51 P------EIRRPSDRF---YGS------SPSTSRPE---DLNLFLELLPLKMRRELYRHR 92
Query: 121 ELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLH 180
E+G LIE+VMDLGRKPLARFPSGDWVISEQ + EDL+HAISKVG+FSDDNRSGIDRSLH
Sbjct: 93 EIGGLIEIVMDLGRKPLARFPSGDWVISEQPIAQEDLRHAISKVGEFSDDNRSGIDRSLH 152
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARM 240
RISAIRNRKMQ+IGLTCRVGRAV GSAEII DLVE GGSILVIGPPGVGKTTLIREIARM
Sbjct: 153 RISAIRNRKMQIIGLTCRVGRAVGGSAEIIRDLVEDGGSILVIGPPGVGKTTLIREIARM 212
Query: 241 LADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETII 300
LAD+ KRVVIVDTSNEIGGDGDVPH+GIGRARRMQVPNVNMQH+VMIEAVENHMPETII
Sbjct: 213 LADEFRKRVVIVDTSNEIGGDGDVPHAGIGRARRMQVPNVNMQHNVMIEAVENHMPETII 272
Query: 301 IDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKK 360
IDEIGTELEALAASTIAQRGVQLVGTAHGMTI+NI+KNP LQILVGGIESVTLGDEEA+K
Sbjct: 273 IDEIGTELEALAASTIAQRGVQLVGTAHGMTIENIIKNPYLQILVGGIESVTLGDEEARK 332
Query: 361 RKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHE 420
RKVQKTILERKGPPTF+CAVEMIS+TECRVHHRLDATVDAILAGK PLFE+RQ D +E
Sbjct: 333 RKVQKTILERKGPPTFSCAVEMISKTECRVHHRLDATVDAILAGKPPLFEIRQWDDSDNE 392
Query: 421 PLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPV 480
K P+ + E S+LT N S++ E ED D+D+ S V S P+
Sbjct: 393 LPKYAPLPEENLGETSDLTNNNITSSDNEPSED--DKDHPRTWSTKWSTSGPVMTRSSPM 450
Query: 481 CVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLP 540
VYTY+ILEADLLQVAKVMGLED IDVTDDIGTA+AILASSSE++QNPWIRGVAKFH +P
Sbjct: 451 QVYTYKILEADLLQVAKVMGLEDVIDVTDDIGTAEAILASSSEIRQNPWIRGVAKFHHVP 510
Query: 541 VFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEE 600
VFVIKSNTMAQMVKAVRMILG+ESFG K P DIEIEDD PKRKP+LEEIDALEE
Sbjct: 511 VFVIKSNTMAQMVKAVRMILGLESFGPTPKKPLNECLDIEIEDDEPKRKPSLEEIDALEE 570
Query: 601 VRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRLNK 660
VRLAIEYIVIPGGEAVELLPRRSEI+ARQLELV+SYQLAAE SGT+ NPRLQILPLRLN
Sbjct: 571 VRLAIEYIVIPGGEAVELLPRRSEIIARQLELVQSYQLAAEKSGTDQNPRLQILPLRLNT 630
Query: 661 NKKSFSNSSNSGSTSPKETLGKSLTSSDA--GTSFTRLPFLPE 701
K S S + + K+T S+++ D+ GTS TRLP LPE
Sbjct: 631 KKASKS------TVARKKTSPTSMSTGDSGNGTSVTRLPILPE 667
>gi|147841865|emb|CAN66926.1| hypothetical protein VITISV_011830 [Vitis vinifera]
Length = 678
Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/650 (74%), Positives = 526/650 (80%), Gaps = 64/650 (9%)
Query: 1 MITLNSRFMLIDINSSWHSANQAPISTLKYIQNTNFITSFSSSFRRTRRARKTFVSQKPT 60
M +L+SR +LID++SSWHSANQ PIST ++QNT FI+S SSSFRRTR S K +
Sbjct: 1 MRSLSSRVVLIDLHSSWHSANQIPISTFAFLQNTGFISSVSSSFRRTR----GIASAKSS 56
Query: 61 PPSIHPPTVRRPSDWAPPRNGSVSDSPNSASTSRSGADIELELFLELLPSRMRRELCMHR 120
P I P +RRP + P NGS S+SPNS STSRS A EL++FLEL+P RMR+EL H
Sbjct: 57 IPLIRSPGIRRPVERFSPGNGSTSNSPNSPSTSRSEALSELDMFLELVPLRMRKELFGHA 116
Query: 121 ELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLH 180
E+GDLIEVVMDLGRKPLARFPSGDW+ISEQIVK EDL+HAISKVG+FSDDNRSGI+ SLH
Sbjct: 117 EIGDLIEVVMDLGRKPLARFPSGDWLISEQIVKLEDLQHAISKVGEFSDDNRSGINHSLH 176
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARM 240
RISAIRNRKMQ+IGLTCRVGR+V+GSAEI+ DLVEGGGSILVIGPPGVGKTTLIREIARM
Sbjct: 177 RISAIRNRKMQIIGLTCRVGRSVSGSAEIVRDLVEGGGSILVIGPPGVGKTTLIREIARM 236
Query: 241 LADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETII 300
LAD+HMKRVVIVDTSNEIGGDGDVPHSGIGRA+ VMIEAVENHMPETII
Sbjct: 237 LADEHMKRVVIVDTSNEIGGDGDVPHSGIGRAK----------EDVMIEAVENHMPETII 286
Query: 301 IDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKK 360
IDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI+KNPSLQILVGGIESVTLGDEEA+K
Sbjct: 287 IDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIMKNPSLQILVGGIESVTLGDEEARK 346
Query: 361 RKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHE 420
RKVQKTILERKGPPTFTCAVEMISRT CRVHHRLDATVDAILA F +
Sbjct: 347 RKVQKTILERKGPPTFTCAVEMISRTHCRVHHRLDATVDAILAEICTSFSPSR------- 399
Query: 421 PLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPV 480
S P ++ +++ SA V
Sbjct: 400 ----------SNPWSTDKPVSKQSSA---------------------------------V 416
Query: 481 CVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLP 540
CVYTY+ILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSE+KQ PWIRGVAKFHQLP
Sbjct: 417 CVYTYKILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSELKQYPWIRGVAKFHQLP 476
Query: 541 VFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEE 600
VFVIKSNTMAQMVKAVRMILG+ESFG+ K P KS+ DIEIEDDAPKRKP+LEEIDALEE
Sbjct: 477 VFVIKSNTMAQMVKAVRMILGIESFGSKPKKPLKSSFDIEIEDDAPKRKPSLEEIDALEE 536
Query: 601 VRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPR 650
VRLAIEYIVIPGGE VELLPRRS+I+ARQLELVESYQLA ENSGTELNPR
Sbjct: 537 VRLAIEYIVIPGGEPVELLPRRSDIIARQLELVESYQLAVENSGTELNPR 586
>gi|296085962|emb|CBI31403.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/572 (81%), Positives = 500/572 (87%), Gaps = 10/572 (1%)
Query: 130 MDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRK 189
MDLGRKPLARFPSGDW+ISEQIVK EDL+HAISKVG+FSDDNRSGI+ SLHRISAIRNRK
Sbjct: 1 MDLGRKPLARFPSGDWLISEQIVKLEDLQHAISKVGEFSDDNRSGINHSLHRISAIRNRK 60
Query: 190 MQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRV 249
MQ+IGLTCRVGR+V+GSAEI+ DLVEGGGSILVIGPPGVGKTTLIREIARMLAD+HMKRV
Sbjct: 61 MQIIGLTCRVGRSVSGSAEIVRDLVEGGGSILVIGPPGVGKTTLIREIARMLADEHMKRV 120
Query: 250 VIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELE 309
VIVDTSNEIGGDGDVPHSGIGRARRMQV NVNMQH+VMIEAVENHMPETIIIDEIGTELE
Sbjct: 121 VIVDTSNEIGGDGDVPHSGIGRARRMQVSNVNMQHNVMIEAVENHMPETIIIDEIGTELE 180
Query: 310 ALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILE 369
ALAASTIAQRGVQLVGTAHGMTIDNI+KNPSLQILVGGIESVTLGDEEA+KRKVQKTILE
Sbjct: 181 ALAASTIAQRGVQLVGTAHGMTIDNIMKNPSLQILVGGIESVTLGDEEARKRKVQKTILE 240
Query: 370 RKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKVTPILR 429
RKGPPTFTCAVEMISRT CRVHHRLDATVDAILAGK PLFE+R MDAE + K T
Sbjct: 241 RKGPPTFTCAVEMISRTHCRVHHRLDATVDAILAGKSPLFELRHMDAEANISQKPTLASE 300
Query: 430 GSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILE 489
EES +T KS +ESDE + ++ ++ S + V K S VCVYTY+ILE
Sbjct: 301 KKLLEESRIT----KSEVVESDE--KHVHHSPSRSNPWSTDKPVSKQSSAVCVYTYKILE 354
Query: 490 ADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTM 549
ADLLQVAKVMGLEDEIDVTDDIGTADAILASSSE+KQ PWIRGVAKFHQLPVFVIKSNTM
Sbjct: 355 ADLLQVAKVMGLEDEIDVTDDIGTADAILASSSELKQYPWIRGVAKFHQLPVFVIKSNTM 414
Query: 550 AQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIV 609
AQMVKAVRMILG+ESFG+ K P KS+ DIEIEDDAPKRKP+LEEIDALEEVRLAIEYIV
Sbjct: 415 AQMVKAVRMILGIESFGSKPKKPLKSSFDIEIEDDAPKRKPSLEEIDALEEVRLAIEYIV 474
Query: 610 IPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRLNKNKKSFSNSS 669
IPGGE VELLPRRS+I+ARQLELVESYQLA ENSGTELNPRLQILPLR NK + +
Sbjct: 475 IPGGEPVELLPRRSDIIARQLELVESYQLAVENSGTELNPRLQILPLRSNKK----TTNK 530
Query: 670 NSGSTSPKETLGKSLTSSDAGTSFTRLPFLPE 701
+S S+ KET K LT+ GTS RLP LPE
Sbjct: 531 SSKSSLQKETNVKPLTTGGGGTSVARLPLLPE 562
>gi|30681308|ref|NP_566373.2| P-loop containing nucleoside triphosphate hydrolase family protein
[Arabidopsis thaliana]
gi|332641382|gb|AEE74903.1| P-loop containing nucleoside triphosphate hydrolase family protein
[Arabidopsis thaliana]
Length = 684
Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/710 (68%), Positives = 552/710 (77%), Gaps = 39/710 (5%)
Query: 1 MITLNSRFMLIDINSSWHSANQAPISTLKYIQNTNFITSFSSSFRRTRRARKTFVSQKPT 60
M LNSR +LIDINSSW ++ + +T T F + SSSFRRTR AR+ S K
Sbjct: 1 MRALNSRLVLIDINSSWQASRRLISAT-----ATAFSSDSSSSFRRTRGARQRIASSKSP 55
Query: 61 PPSIHPPTVRRPSDW--------APPRNGSVSDSPNSASTSRSGADIELELFLELLPSRM 112
S VRRPSD + + S SP +A + +EL+ FLE+LP
Sbjct: 56 ASSPS--PVRRPSDGFSFDVRSPSSDSSISSRKSPTTAPPT-----VELDAFLEILPPAT 108
Query: 113 RRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNR 172
R+EL H + +LIEVVMDLGRKPLARFPSGDWVISEQ V H+DL+ A+SKVGDFSDDNR
Sbjct: 109 RKELVKHEAIEELIEVVMDLGRKPLARFPSGDWVISEQPVTHQDLELAVSKVGDFSDDNR 168
Query: 173 SGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTT 232
SGIDRSLHRISAIRNRK+QVIGLTCRVGR V+GSAEII DL+EGGGSILVIG PGVGKTT
Sbjct: 169 SGIDRSLHRISAIRNRKLQVIGLTCRVGRVVSGSAEIIRDLIEGGGSILVIGSPGVGKTT 228
Query: 233 LIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVE 292
LIREIARMLAD+H KRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVN+QH VMIEAVE
Sbjct: 229 LIREIARMLADEHRKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNLQHDVMIEAVE 288
Query: 293 NHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVT 352
NHMPETIIIDEIGTELEALAASTIAQRGVQLV TAHGMTIDNI+KNPSLQIL+GGIESVT
Sbjct: 289 NHMPETIIIDEIGTELEALAASTIAQRGVQLVATAHGMTIDNIIKNPSLQILIGGIESVT 348
Query: 353 LGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVR 412
LGDEEA+KRKVQKTILERKGPPTFTCAVEMISRTECRVH RLD TVDAILAGK FE+R
Sbjct: 349 LGDEEARKRKVQKTILERKGPPTFTCAVEMISRTECRVHQRLDVTVDAILAGKSAPFEIR 408
Query: 413 QMDAEHHEPLK-VTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKR 471
Q+ E P K VTPI + EE +N D +E+ SD+ EDED+ + N++
Sbjct: 409 QIRGEDDVPHKLVTPIPLENLEEEPAPLLNRDFVSELLSDD--EDEDFLLIR-SNKARSN 465
Query: 472 SVRKP-SPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWI 530
+ P S PV VYTY +LEADLLQVA+VMGL+DEI+VTDD+G AD ILASSSE+KQN I
Sbjct: 466 TYTSPRSSPVHVYTYNVLEADLLQVAEVMGLDDEIEVTDDVGEADVILASSSELKQNSSI 525
Query: 531 RGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKST-SDIEIEDDAPKRK 589
R VAK H+LP+FVIKS TMAQMVKAVRMILG ESFG+ K KS+ DIEI+DDAP+ K
Sbjct: 526 RRVAKLHKLPIFVIKSTTMAQMVKAVRMILGRESFGSAPKAIEKSSVDDIEIKDDAPESK 585
Query: 590 PTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNP 649
P+LEE+DALEEVRLAIEYIVIPGGE VELLPRRS+I+ RQLELVESYQLA EN GT LNP
Sbjct: 586 PSLEELDALEEVRLAIEYIVIPGGEPVELLPRRSDIIVRQLELVESYQLAVENLGTHLNP 645
Query: 650 RLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSDAGTSFTRLPFL 699
RLQILP R KK+ + S+SP+++ S+ GT+ TRLPFL
Sbjct: 646 RLQILPRR--STKKTLT------SSSPQKSADGSM-----GTTGTRLPFL 682
>gi|297829570|ref|XP_002882667.1| hypothetical protein ARALYDRAFT_897221 [Arabidopsis lyrata subsp.
lyrata]
gi|297328507|gb|EFH58926.1| hypothetical protein ARALYDRAFT_897221 [Arabidopsis lyrata subsp.
lyrata]
Length = 688
Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/714 (68%), Positives = 549/714 (76%), Gaps = 43/714 (6%)
Query: 1 MITLNSRFMLIDINSSWHSANQAPISTLKYIQNTNFITSFSSSFRRTRRARKTFVSQKPT 60
M LNSR +LIDINSSW ++ + +T T F + SSSFRRTR AR+ S K
Sbjct: 1 MRALNSRLVLIDINSSWQASRRLISAT-----ATAFSSDSSSSFRRTRGARQRISSSKSP 55
Query: 61 PPSIHPPTVRRPSDW------------APPRNGSVSDSPNSASTSRSGADIELELFLELL 108
S VRRPSD + + S SP A + +EL+ FLE+L
Sbjct: 56 ASSPS--PVRRPSDGFSFDVRSPSADSSNSASISSRKSPKMAPPT-----VELDAFLEIL 108
Query: 109 PSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS 168
P R+EL H + +LIEVVMDLGRKPLARFPSGDWVISEQ V H+DL+ A+SKVGDFS
Sbjct: 109 PPATRKELVKHEAIEELIEVVMDLGRKPLARFPSGDWVISEQPVTHQDLELAVSKVGDFS 168
Query: 169 DDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGV 228
DDNRSGIDRSLHRISAIRNRK+QVIGLTCRVGR V+GSAEII DL+EGGGSILVIG PGV
Sbjct: 169 DDNRSGIDRSLHRISAIRNRKLQVIGLTCRVGRVVSGSAEIIRDLIEGGGSILVIGSPGV 228
Query: 229 GKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMI 288
GKTTLIREIARMLAD+H KRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVN+QH VMI
Sbjct: 229 GKTTLIREIARMLADEHRKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNLQHDVMI 288
Query: 289 EAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348
EAVENHMPETIIIDEIGTELEALAASTIAQRGVQLV TAHGMTIDNI+KNPSLQIL+GGI
Sbjct: 289 EAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVATAHGMTIDNIIKNPSLQILIGGI 348
Query: 349 ESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPL 408
ESVTLGDEEA+KRKVQKTILERKGPPTFTCAVEMISRTECRVH RLD TVDAILAGK L
Sbjct: 349 ESVTLGDEEARKRKVQKTILERKGPPTFTCAVEMISRTECRVHQRLDVTVDAILAGKSAL 408
Query: 409 FEVRQMDAEHHEPLK-VTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNR 467
FE+RQ+ E P K VTPI EE +N D ++E+ SD+ EDED+ ++ N+
Sbjct: 409 FEIRQIRGEDDVPHKLVTPIPLERVEEEPAPLLNRDFASEVLSDD--EDEDFLPIRY-NK 465
Query: 468 SIKRSVRKP-SPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQ 526
+ + + P S PV VYTY +LEADLLQVA+VMGL+DEI+VTDD+G AD ILASSSE+KQ
Sbjct: 466 ASSNTYKSPRSSPVHVYTYNVLEADLLQVAEVMGLDDEIEVTDDVGEADVILASSSELKQ 525
Query: 527 NPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKS-TSDIEIEDDA 585
N IR VAK H+LP+FVIKS TMAQMVKAVRMILG ESFG+ + KS DIEI+DDA
Sbjct: 526 NSSIRRVAKLHKLPIFVIKSTTMAQMVKAVRMILGRESFGSAPENIEKSYVDDIEIKDDA 585
Query: 586 PKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGT 645
P+ KP+LEE+DALEEVRLAIEYIVIPGGE VELLPRRS+I+ RQLELVESYQLA EN GT
Sbjct: 586 PESKPSLEELDALEEVRLAIEYIVIPGGEPVELLPRRSDIIVRQLELVESYQLAVENLGT 645
Query: 646 ELNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSDAGTSFTRLPFL 699
LNPRLQILP R S S+SP++ S+ GT+ TRLPFL
Sbjct: 646 HLNPRLQILPRR--------STKKTLSSSSPQKAADDSM-----GTTGTRLPFL 686
>gi|15810179|gb|AAL06991.1| AT3g10420/F13M14_30 [Arabidopsis thaliana]
gi|28416489|gb|AAO42775.1| At3g10420/F13M14_30 [Arabidopsis thaliana]
Length = 559
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/573 (75%), Positives = 480/573 (83%), Gaps = 19/573 (3%)
Query: 130 MDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRK 189
MDLGRKPLARFPSGDWVISEQ V H+DL+ A+SKVGDFSDDNRSGIDRSLHRISAIRNRK
Sbjct: 1 MDLGRKPLARFPSGDWVISEQPVTHQDLELAVSKVGDFSDDNRSGIDRSLHRISAIRNRK 60
Query: 190 MQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRV 249
+QVIGLTCRVGR V+GSAEII DL+EGGGSILVIG PGVGKTTLIREIARMLAD+H KRV
Sbjct: 61 LQVIGLTCRVGRVVSGSAEIIRDLIEGGGSILVIGSPGVGKTTLIREIARMLADEHRKRV 120
Query: 250 VIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELE 309
VIVDTSNEIGGDGDVPHSGIGRARRMQVPNVN+QH VMIEAVENHMPETIIIDEIGTELE
Sbjct: 121 VIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNLQHDVMIEAVENHMPETIIIDEIGTELE 180
Query: 310 ALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILE 369
ALAASTIAQRGVQLV TAHGMTIDNI+KNPSLQIL+GGIESVTLGDEEA+KRKVQKTILE
Sbjct: 181 ALAASTIAQRGVQLVATAHGMTIDNIIKNPSLQILIGGIESVTLGDEEARKRKVQKTILE 240
Query: 370 RKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLK-VTPIL 428
RKGPPTFTCAVEMISRTECRVH RLD TVDAILAGK FE+RQ+ E P K VTPI
Sbjct: 241 RKGPPTFTCAVEMISRTECRVHQRLDVTVDAILAGKSAPFEIRQIRGEDDVPHKLVTPIP 300
Query: 429 RGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKP-SPPVCVYTYRI 487
+ EE +N D +E+ SD+ EDED+ + N++ + P S PV VYTY +
Sbjct: 301 LENLEEEPAPLLNRDFVSELLSDD--EDEDFLLIR-SNKARSNTYTSPRSSPVHVYTYNV 357
Query: 488 LEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSN 547
LEADLLQVA+VMGL+DEI+VTDD+G AD ILASSSE+KQN IR VAK H+LP+FVIKS
Sbjct: 358 LEADLLQVAEVMGLDDEIEVTDDVGEADVILASSSELKQNSSIRRVAKLHKLPIFVIKST 417
Query: 548 TMAQMVKAVRMILGMESFGTISKLPNKST-SDIEIEDDAPKRKPTLEEIDALEEVRLAIE 606
TMAQMVKAVRMILG ESFG+ K KS+ DIEI+DDAP+ KP+LEE+DALEEVRLAIE
Sbjct: 418 TMAQMVKAVRMILGRESFGSAPKAIEKSSVDDIEIKDDAPESKPSLEELDALEEVRLAIE 477
Query: 607 YIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRLNKNKKSFS 666
YIVIPGGE VELLPRRS+I+ RQLELVESYQLA EN GT LNPRLQILP R KK+ +
Sbjct: 478 YIVIPGGEPVELLPRRSDIIVRQLELVESYQLAVENLGTHLNPRLQILPRR--STKKTLT 535
Query: 667 NSSNSGSTSPKETLGKSLTSSDAGTSFTRLPFL 699
S+SP+++ S+ GT+ TRLPFL
Sbjct: 536 ------SSSPQKSADGSM-----GTTGTRLPFL 557
>gi|242047690|ref|XP_002461591.1| hypothetical protein SORBIDRAFT_02g005070 [Sorghum bicolor]
gi|241924968|gb|EER98112.1| hypothetical protein SORBIDRAFT_02g005070 [Sorghum bicolor]
Length = 628
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/628 (67%), Positives = 502/628 (79%), Gaps = 25/628 (3%)
Query: 94 RSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVK 153
R G +ELE FLE++P+RMRR L +H+E+ L+EVVMDLGR+P+ARFPSGDWVIS+Q+V
Sbjct: 6 RPGRGVELEAFLEVVPARMRRGLALHQEVRHLVEVVMDLGRRPIARFPSGDWVISDQVVT 65
Query: 154 HEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDL 213
+DL A++KVGDFS+DNRSGI+ SLHRISAIRNRK Q+IGLTCRVGRA++GSAE+I DL
Sbjct: 66 ADDLLQAVAKVGDFSEDNRSGINHSLHRISAIRNRKAQIIGLTCRVGRAISGSAEMIRDL 125
Query: 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRAR 273
V GGGSILVIGPPGVGKTTLIREIAR+LAD+ KRV+IVDTSNEIGGDGDVPHSGIGRAR
Sbjct: 126 VVGGGSILVIGPPGVGKTTLIREIARILADEGKKRVIIVDTSNEIGGDGDVPHSGIGRAR 185
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
RMQVP V MQH+VMIEAVENHMPE I+IDEIGTELEA+AASTIAQRGVQLVGTAHG+TI+
Sbjct: 186 RMQVPKVTMQHNVMIEAVENHMPEVIVIDEIGTELEAMAASTIAQRGVQLVGTAHGVTIE 245
Query: 334 NIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHR 393
+I+KNP LQ+LVGGIESVTLGDEEAKKRKVQKTILERKGPPTF+CAVEMIS+TECRVHH+
Sbjct: 246 SIIKNPCLQMLVGGIESVTLGDEEAKKRKVQKTILERKGPPTFSCAVEMISKTECRVHHK 305
Query: 394 LDATVDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDED 453
LDATVDAILAGK P FE R+M + E I Y ES ED + S E
Sbjct: 306 LDATVDAILAGKPPKFEARKMHNKSTESEMPLVIPDREYEIESLPLYQEDMVTKSISLEG 365
Query: 454 SEDEDY-ASNQFKNRSI-------------KRSVRKPSPP----VCVYTYRILEADLLQV 495
+ ED+ AS Q K +S+ +++ K S P V VYTY+I EAD+LQV
Sbjct: 366 NLSEDFAASRQTKIKSMPSDDNFGDDFVYTRKAKGKKSVPGKALVRVYTYQISEADILQV 425
Query: 496 AKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKA 555
A VMG +DE+DVTDDIG AD ILASSSEMKQNPWI VAK+H+LP+FV+K+NTMAQ+VKA
Sbjct: 426 ATVMGFDDELDVTDDIGAADVILASSSEMKQNPWIHNVAKYHKLPIFVVKTNTMAQIVKA 485
Query: 556 VRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEA 615
+RMI+G ++ + SK P +IEIEDDAP RKP+LEEIDALEE RLAIEYIVIPGGE
Sbjct: 486 IRMIVGRDNRSS-SKQPKVMEGEIEIEDDAPIRKPSLEEIDALEEARLAIEYIVIPGGEP 544
Query: 616 VELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRLNKNKKSFSNSSNSGSTS 675
VELLPR SEIVARQLELVESYQL AE G++ NPRLQILP+++ K +S ++G +
Sbjct: 545 VELLPRCSEIVARQLELVESYQLLAETFGSDSNPRLQILPVKITKK----GSSKDNGVSK 600
Query: 676 PKETLGKSLTSSD--AGTSFTRLPFLPE 701
P + G L S+ G+SF+RLPFLP+
Sbjct: 601 PTKQTGSDLIVSENGGGSSFSRLPFLPK 628
>gi|326513988|dbj|BAJ92144.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326523339|dbj|BAJ88710.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/691 (63%), Positives = 515/691 (74%), Gaps = 35/691 (5%)
Query: 41 SSSFRRTRRARKTFVSQKPTPPSIHPPTVRRPS-DWAPPRNGSVSDSPNSASTS------ 93
SSS R AR+ ++ P P VRRPS D P G+ P S S S
Sbjct: 19 SSSAGCARAARRGGPPRRAVPQ--QQPPVRRPSGDRCVPWRGAAPSGPASPSVSPAVATP 76
Query: 94 ----RSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISE 149
R+GA E+E FLE++P+RMRREL +H E+ DL+EVVMDLGR+PLARFPSGDWVIS+
Sbjct: 77 APEARAGARGEMEAFLEVVPARMRRELALHPEVWDLVEVVMDLGRRPLARFPSGDWVISD 136
Query: 150 QIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEI 209
Q V +DL+ A+SKVG+FS+DNRSGI+ SLHRISAIRNRK +IGLTCRVGRA++GSAE+
Sbjct: 137 QPVTADDLRQAVSKVGNFSEDNRSGINHSLHRISAIRNRKAHIIGLTCRVGRAISGSAEM 196
Query: 210 ICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGI 269
I DLV GGGSILVIGPPGVGKTTLIREIAR+LAD+ KRV+IVDTSNEIGGDGDVPHSGI
Sbjct: 197 IRDLVVGGGSILVIGPPGVGKTTLIREIARILADEGNKRVIIVDTSNEIGGDGDVPHSGI 256
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHG 329
GR+RRMQVP V MQH+VMIEAVENHMPE I+IDEIGTELEA+AASTIAQRGVQLVGTAHG
Sbjct: 257 GRSRRMQVPKVTMQHNVMIEAVENHMPEVIVIDEIGTELEAMAASTIAQRGVQLVGTAHG 316
Query: 330 MTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECR 389
+TID+I+KNP LQ+LVGGIESVTLGDEEAKKRKVQKTILERKGPPTF+CAVEM+S+TECR
Sbjct: 317 VTIDSIIKNPCLQMLVGGIESVTLGDEEAKKRKVQKTILERKGPPTFSCAVEMVSKTECR 376
Query: 390 VHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEME 449
VH++L++TVDAILAGK P FE R M+++ E I E ED
Sbjct: 377 VHYKLESTVDAILAGKPPKFEARMMNSKAAESGGSLVISERVSESEHLPAYQEDLVTRAV 436
Query: 450 SDEDSEDEDYASNQFKNRSI-----------------KRSVRKPSPPVCVYTYRILEADL 492
+ ED +D+ S++ N SI ++ PPV VYTY++ EAD+
Sbjct: 437 TPEDKFADDFGSSRQTNNSIPSGDNVNGDFGYAKKTKGKTYVAGRPPVRVYTYQVSEADI 496
Query: 493 LQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQM 552
LQVA VMG EDE+D+TDDI A+ ILASSSEMKQNPWIR VAK+H+LP+FV+K+NTMAQ+
Sbjct: 497 LQVATVMGFEDELDITDDIEAANVILASSSEMKQNPWIRNVAKYHKLPIFVVKTNTMAQI 556
Query: 553 VKAVRMILGMESFGTIS-KLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIP 611
VKAV+MI+G + S K P +IEIEDDAPKRKP+LEEIDALEE RLAIEYIVIP
Sbjct: 557 VKAVKMIVGRDKLNAPSRKQPKVLEGEIEIEDDAPKRKPSLEEIDALEEARLAIEYIVIP 616
Query: 612 GGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRLNKNKKSFSNSSNS 671
GGE VELLPR SEIVARQLELVESYQL AE GT+ N RLQILP+++ K S
Sbjct: 617 GGEPVELLPRCSEIVARQLELVESYQLLAETFGTDPNSRLQILPVKIAKKT---SGQGAQ 673
Query: 672 GSTSPKETLGKSLTSSDAGT-SFTRLPFLPE 701
G TS K+ + + G SF+RLPFLP+
Sbjct: 674 GQTSTKKNGSDLIVGENGGGFSFSRLPFLPK 704
>gi|414591924|tpg|DAA42495.1| TPA: hypothetical protein ZEAMMB73_459348 [Zea mays]
Length = 696
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/666 (65%), Positives = 515/666 (77%), Gaps = 42/666 (6%)
Query: 67 PTVRRPSD---WAPPRNGSVSD---SPNSASTSRSGADIELELFLELLPSRMRRELCMHR 120
P VRRPS AP R + +D +P+ + + GA ELE FLE++P+RMRR L H+
Sbjct: 42 PPVRRPSGDRLRAPSRGAAAADQLPAPDVGAAA-PGARGELEAFLEIVPARMRRGLARHQ 100
Query: 121 ELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLH 180
EL DL+EV+MDLGR+P+ARFPSGDW IS+Q V +DL+ A++KVGDFS+DNRSGI+ SLH
Sbjct: 101 ELRDLVEVIMDLGRRPIARFPSGDWAISDQPVTADDLRQAVAKVGDFSEDNRSGINHSLH 160
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARM 240
RISAIRNRK Q+IGLTCRVGRA++GSAE+I DLV GGSILVIGPPGVGKTTLIREIAR+
Sbjct: 161 RISAIRNRKAQIIGLTCRVGRAISGSAEMIRDLVVSGGSILVIGPPGVGKTTLIREIARI 220
Query: 241 LADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETII 300
LAD+ KRV+IVDTSNEIGGDGDVPHSGIGRARRMQVP V MQH+VMIEAVENHMPE I+
Sbjct: 221 LADEGKKRVIIVDTSNEIGGDGDVPHSGIGRARRMQVPKVTMQHNVMIEAVENHMPEVIV 280
Query: 301 IDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKK 360
IDEIGTELEA+AA+TIAQRGVQLVGTAHG+TI++I+KNP LQ+LVGGIESVTLGDEEAKK
Sbjct: 281 IDEIGTELEAMAATTIAQRGVQLVGTAHGVTIESIIKNPCLQMLVGGIESVTLGDEEAKK 340
Query: 361 RKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQM---DAE 417
RKVQKTILERKGPPTF CAVEMIS+TECRVHHRLDATVDAILAGK P FE R+M E
Sbjct: 341 RKVQKTILERKGPPTFLCAVEMISKTECRVHHRLDATVDAILAGKPPKFEARKMHNKSTE 400
Query: 418 HHEPLKVTPILRG---SYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSI----- 469
PL V P S P E+ + + SD + D+ AS Q K++S+
Sbjct: 401 FEMPL-VIPDREYEIESLPLYQEVMVTRS----LSSDGNFSDDFAASRQTKSKSMPSEDN 455
Query: 470 -------KRSVRKPSPP-----VCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAI 517
R + P V VYTY+I EAD+LQVA +MG +DE+DVTDDIG AD I
Sbjct: 456 FGDNFVYTRKAKGNKPVHGKSLVQVYTYQISEADILQVATMMGFDDELDVTDDIGAADVI 515
Query: 518 LASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTS 577
LASSSEMKQNPWI VAK+H+LP+FV+K+NTMAQ+VKA+RMI+G ++ + SK P
Sbjct: 516 LASSSEMKQNPWIHNVAKYHKLPIFVVKTNTMAQIVKAIRMIVGRDNTSS-SKQPEVMEG 574
Query: 578 DIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQ 637
+IEIEDDAPKRKP+LEEIDALEE RLAIEYIVIPGGE VELLPR SEIVARQLELVESYQ
Sbjct: 575 EIEIEDDAPKRKPSLEEIDALEEARLAIEYIVIPGGEPVELLPRCSEIVARQLELVESYQ 634
Query: 638 LAAENSGTELNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSD--AGTSFTR 695
L AE G++ N RLQILP+++ K +S ++G++ P + G L S+ G+SF+R
Sbjct: 635 LLAETFGSDSNSRLQILPMKITKR----GSSKDNGASKPTKQTGSDLIVSENGGGSSFSR 690
Query: 696 LPFLPE 701
LPFLP+
Sbjct: 691 LPFLPK 696
>gi|218199218|gb|EEC81645.1| hypothetical protein OsI_25180 [Oryza sativa Indica Group]
Length = 682
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/659 (65%), Positives = 513/659 (77%), Gaps = 29/659 (4%)
Query: 67 PTVRRPSD---WAPPRNGSVSDSPNSAS-TSRSGADIELELFLELLPSRMRRELCMHREL 122
P VRRPS P R G + +P + + +GA ELE FLE++P+RMRR L H E+
Sbjct: 29 PPVRRPSGDRACTPWRGGVGAAAPAPVTPVAAAGARDELEAFLEVVPARMRRGLARHPEV 88
Query: 123 GDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRI 182
+L+EVVMDLGR+PLARFPSGDWVISEQ V +DL A+SKVGDFS+DNRSGI+ SLHRI
Sbjct: 89 RELVEVVMDLGRRPLARFPSGDWVISEQAVTADDLHQAVSKVGDFSEDNRSGINHSLHRI 148
Query: 183 SAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLA 242
SAIRNRK +IGLTCRVGRA++GSAE+I DLV GGGSILVIGPPGVGKTTLIREIAR+LA
Sbjct: 149 SAIRNRKAHIIGLTCRVGRAISGSAEMIRDLVVGGGSILVIGPPGVGKTTLIREIARILA 208
Query: 243 DDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
D+ KRV+IVDTSNEIGGDGDVPHSGIGR+RRMQVP V+MQH+VMIEAVENHMPE I+ID
Sbjct: 209 DEGKKRVIIVDTSNEIGGDGDVPHSGIGRSRRMQVPKVSMQHNVMIEAVENHMPEVIVID 268
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRK 362
EIGTELEA+AASTIAQRGVQLVGTAHG+TI++I+KNP LQ+LVGGIESVTLGDEEAKKRK
Sbjct: 269 EIGTELEAMAASTIAQRGVQLVGTAHGVTIESIIKNPCLQVLVGGIESVTLGDEEAKKRK 328
Query: 363 VQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPL 422
VQKTILERKGPPTF+CAVEMIS+TECRVHH+L+ATVDAILAGK P FE R+MD + E
Sbjct: 329 VQKTILERKGPPTFSCAVEMISKTECRVHHKLEATVDAILAGKPPKFEARKMDYKVTESG 388
Query: 423 KVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSI------------- 469
+ I Y E + E A+ ED+ D+D+++ + +++S+
Sbjct: 389 RSLVIPEREYETEPLPSYQEHHFAKAMPSEDNFDDDFSTRRTESKSVPSNDNFNDDFGST 448
Query: 470 -----KRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEM 524
K SV S PV VYTY+I EAD+LQVA VMG +DE+DVTDDIG A+ ILASSSEM
Sbjct: 449 RKTKGKTSVPGKS-PVHVYTYQISEADILQVATVMGFDDELDVTDDIGAANVILASSSEM 507
Query: 525 KQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTIS-KLPNKSTSDIEIED 583
KQN WIR VAK+H+LP+FV+K+NTMAQ+VKAVRMI+G + + K P +IEIED
Sbjct: 508 KQNHWIRNVAKYHKLPIFVVKTNTMAQIVKAVRMIVGRDKLNAPTRKQPKVVVGEIEIED 567
Query: 584 DAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENS 643
DAPKRKP+LEEIDALEE RLAIEYIVIPGGE VELLPR SEIVARQLELVESYQL AE
Sbjct: 568 DAPKRKPSLEEIDALEEARLAIEYIVIPGGEPVELLPRCSEIVARQLELVESYQLLAETF 627
Query: 644 GTELNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSD-AGTSFTRLPFLPE 701
GT+ N RLQILP+++ K S ++ + PK+ + S + G+SF+RLPFLP+
Sbjct: 628 GTDSNSRLQILPVKITKKSSSKGSA----GSMPKQGSSDLIVSDNGGGSSFSRLPFLPK 682
>gi|33146924|dbj|BAC79945.1| ATPase-like protein [Oryza sativa Japonica Group]
gi|50509453|dbj|BAD31071.1| ATPase-like protein [Oryza sativa Japonica Group]
Length = 707
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/667 (64%), Positives = 513/667 (76%), Gaps = 37/667 (5%)
Query: 67 PTVRRPSD---WAPPRNGSVSDSPNSAS-TSRSGADIELELFLELLPSRMRRELCMHREL 122
P VRRPS P R G + +P + + +GA ELE FLE++P+RMRR L H E+
Sbjct: 46 PPVRRPSGDRACTPWRGGVGAAAPAPVTPVAAAGARDELEAFLEVVPARMRRGLARHPEV 105
Query: 123 GDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRI 182
+L+EVVMDLGR+PLARFPSGDWVISEQ V +DL A+SKVGDFS+DNRSGI+ SLHRI
Sbjct: 106 RELVEVVMDLGRRPLARFPSGDWVISEQAVTADDLHQAVSKVGDFSEDNRSGINHSLHRI 165
Query: 183 SAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLI-------- 234
SAIRNRK +IGLTCRVGRA++GSAE+I DLV GGGSILVIGPPGVGKTTLI
Sbjct: 166 SAIRNRKAHIIGLTCRVGRAISGSAEMIRDLVVGGGSILVIGPPGVGKTTLISLRCFQQY 225
Query: 235 REIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENH 294
REIAR+LAD+ KRV+IVDTSNEIGGDGDVPHSGIGR+RRMQVP V+MQH+VMIEAVENH
Sbjct: 226 REIARILADEGKKRVIIVDTSNEIGGDGDVPHSGIGRSRRMQVPKVSMQHNVMIEAVENH 285
Query: 295 MPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLG 354
MPE I+IDEIGTELEA+AASTIAQRGVQLVGTAHG+TI++I+KNP LQ+LVGGIESVTLG
Sbjct: 286 MPEVIVIDEIGTELEAMAASTIAQRGVQLVGTAHGVTIESIIKNPCLQVLVGGIESVTLG 345
Query: 355 DEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQM 414
DEEAKKRKVQKTILERKGPPTF+CAVEMIS+TECRVHH+L+ATVDAILAGK P FE R+M
Sbjct: 346 DEEAKKRKVQKTILERKGPPTFSCAVEMISKTECRVHHKLEATVDAILAGKPPKFEARKM 405
Query: 415 DAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSI----- 469
D + E + I Y E + E A+ ED+ D+D+++ + +++S+
Sbjct: 406 DYKATESGRSLVIPEREYETEPLPSYQEHHFAKAMPSEDNFDDDFSTRRTESKSVPSNDN 465
Query: 470 -------------KRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADA 516
K SV S PV VYTY+I EAD+LQVA VMG +DE+DVTDDIG A+
Sbjct: 466 FNDDFGSTRKTKGKTSVPGKS-PVHVYTYQISEADILQVATVMGFDDELDVTDDIGAANV 524
Query: 517 ILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTIS-KLPNKS 575
ILASSSEMKQN WIR VAK+H+LP+FV+K+NTMAQ+VKAVRMI+G + + K P
Sbjct: 525 ILASSSEMKQNHWIRNVAKYHKLPIFVVKTNTMAQIVKAVRMIVGRDKLNAPTRKQPKVV 584
Query: 576 TSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVES 635
+IEIEDDAPKRKP+LEEIDALEE RLAIEYIVIPGGE VELLPR SEIVARQLELVES
Sbjct: 585 VGEIEIEDDAPKRKPSLEEIDALEEARLAIEYIVIPGGEPVELLPRCSEIVARQLELVES 644
Query: 636 YQLAAENSGTELNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSD-AGTSFT 694
YQL AE GT+ N RLQILP+++ K S ++ + PK+ + S + G+SF+
Sbjct: 645 YQLLAETFGTDSNSRLQILPVKITKKSSSKGSA----GSMPKQGSSDLIVSDNGGGSSFS 700
Query: 695 RLPFLPE 701
RLPFLP+
Sbjct: 701 RLPFLPK 707
>gi|357111296|ref|XP_003557450.1| PREDICTED: uncharacterized protein ycf45-like [Brachypodium
distachyon]
Length = 707
Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/621 (66%), Positives = 492/621 (79%), Gaps = 21/621 (3%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
ELE FLE++P+RMRR+L MH E+ +L+EVVMDLGR+PLARFPSGDWVIS+Q V +DL+
Sbjct: 89 ELEAFLEVVPARMRRDLAMHPEVRELVEVVMDLGRRPLARFPSGDWVISDQPVTADDLRQ 148
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
A+SKVG+FS+DNRSGI+ SLHRISAIRNRK +IGLTCRVGRA++GSAE+I DLV GGGS
Sbjct: 149 AVSKVGNFSEDNRSGINHSLHRISAIRNRKAHIIGLTCRVGRAISGSAEMIRDLVVGGGS 208
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
ILVIGPPGVGKTTLIREIAR+LAD+ KRV+IVDTSNEIGGDGDVPHSGIGR+RRMQVP
Sbjct: 209 ILVIGPPGVGKTTLIREIARILADEGKKRVIIVDTSNEIGGDGDVPHSGIGRSRRMQVPK 268
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
V MQH+VMIEAVENHMPE I+IDEIGTELEALAASTIAQRGVQLVGTAHG+TI++I+KNP
Sbjct: 269 VTMQHNVMIEAVENHMPEVIVIDEIGTELEALAASTIAQRGVQLVGTAHGVTIESIIKNP 328
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
LQ+LVGGIESVTLGDEEAKKRKVQKTILERKGPPTF+CAVEM+S+TECRVHH+L+ TVD
Sbjct: 329 CLQMLVGGIESVTLGDEEAKKRKVQKTILERKGPPTFSCAVEMVSKTECRVHHKLETTVD 388
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
AILAGK P FE R MD++ EP I Y E + E + ED +D+
Sbjct: 389 AILAGKPPKFEARVMDSKATEPGASFVIPEMEYEMEPLPSCQEHLVTRTITSEDQFVDDF 448
Query: 460 ASN-QFKNRSIK-----------------RSVRKPSPPVCVYTYRILEADLLQVAKVMGL 501
S Q K++S+ ++ PPV VYTY++ E+D+LQVA VMG
Sbjct: 449 GSTRQTKSKSVPSDDYLDGHSGYTKKTKGKTYAAERPPVRVYTYQVSESDVLQVASVMGF 508
Query: 502 EDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILG 561
+DE+++TDDIG A+ ILASSSEMKQNPWIR VAK+H+LP+FV+K+NTMAQ+VKAV+MI+G
Sbjct: 509 DDELEITDDIGAANVILASSSEMKQNPWIRNVAKYHKLPIFVVKTNTMAQIVKAVKMIVG 568
Query: 562 MESFGTIS-KLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLP 620
+ S K P +IEI+DDAPKRKP+LEEIDALEE RLAIEYIVIPGGE VELLP
Sbjct: 569 RDKLNAPSRKQPKVLEGEIEIDDDAPKRKPSLEEIDALEEARLAIEYIVIPGGEPVELLP 628
Query: 621 RRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETL 680
R SEIVARQLELVESYQL AE GT+ N RLQILP+++ KKS S + +++ K
Sbjct: 629 RCSEIVARQLELVESYQLLAETFGTDPNSRLQILPVKI--TKKSSSQGAQGQTSTNKSAS 686
Query: 681 GKSLTSSDAGTSFTRLPFLPE 701
+ + G SF+RLPFLP+
Sbjct: 687 DLIVNENGGGFSFSRLPFLPK 707
>gi|222636577|gb|EEE66709.1| hypothetical protein OsJ_23378 [Oryza sativa Japonica Group]
Length = 605
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/609 (67%), Positives = 483/609 (79%), Gaps = 23/609 (3%)
Query: 112 MRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDN 171
MRR L H E+ +L+EVVMDLGR+PLARFPSGDWVISEQ V +DL A+SKVGDFS+DN
Sbjct: 1 MRRGLARHPEVRELVEVVMDLGRRPLARFPSGDWVISEQAVTADDLHQAVSKVGDFSEDN 60
Query: 172 RSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKT 231
RSGI+ SLHRISAIRNRK +IGLTCRVGRA++GSAE+I DLV GGGSILVIGPPGVGKT
Sbjct: 61 RSGINHSLHRISAIRNRKAHIIGLTCRVGRAISGSAEMIRDLVVGGGSILVIGPPGVGKT 120
Query: 232 TLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAV 291
TLIREIAR+LAD+ KRV+IVDTSNEIGGDGDVPHSGIGR+RRMQVP V+MQH+VMIEAV
Sbjct: 121 TLIREIARILADEGKKRVIIVDTSNEIGGDGDVPHSGIGRSRRMQVPKVSMQHNVMIEAV 180
Query: 292 ENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESV 351
ENHMPE I+IDEIGTELEA+AASTIAQRGVQLVGTAHG+TI++I+KNP LQ+LVGGIESV
Sbjct: 181 ENHMPEVIVIDEIGTELEAMAASTIAQRGVQLVGTAHGVTIESIIKNPCLQVLVGGIESV 240
Query: 352 TLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEV 411
TLGDEEAKKRKVQKTILERKGPPTF+CAVEMIS+TECRVHH+L+ATVDAILAGK P FE
Sbjct: 241 TLGDEEAKKRKVQKTILERKGPPTFSCAVEMISKTECRVHHKLEATVDAILAGKPPKFEA 300
Query: 412 RQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKR 471
R+MD + E + I Y E + E A+ ED+ D+D+++ + +++S+
Sbjct: 301 RKMDYKATESGRSLVIPEREYETEPLPSYQEHHFAKAMPSEDNFDDDFSTRRTESKSVPS 360
Query: 472 ---------SVRKP--------SPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTA 514
S RK PV VYTY+I EAD+LQVA VMG +DE+DVTDDIG A
Sbjct: 361 NDNFNDDFGSTRKTKGKTSVPGKSPVHVYTYQISEADILQVATVMGFDDELDVTDDIGAA 420
Query: 515 DAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGT-ISKLPN 573
+ ILASSSEMKQN WIR VAK+H+LP+FV+K+NTMAQ+VKAVRMI+G + K P
Sbjct: 421 NVILASSSEMKQNHWIRNVAKYHKLPIFVVKTNTMAQIVKAVRMIVGRDKLNAPTRKQPK 480
Query: 574 KSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELV 633
+IEIEDDAPKRKP+LEEIDALEE RLAIEYIVIPGGE VELLPR SEIVARQLELV
Sbjct: 481 VVVGEIEIEDDAPKRKPSLEEIDALEEARLAIEYIVIPGGEPVELLPRCSEIVARQLELV 540
Query: 634 ESYQLAAENSGTELNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSD-AGTS 692
ESYQL AE GT+ N RLQILP+++ K S ++ + PK+ + S + G+S
Sbjct: 541 ESYQLLAETFGTDSNSRLQILPVKITKKSSSKGSA----GSMPKQGSSDLIVSDNGGGSS 596
Query: 693 FTRLPFLPE 701
F+RLPFLP+
Sbjct: 597 FSRLPFLPK 605
>gi|308081617|ref|NP_001183219.1| uncharacterized protein LOC100501605 [Zea mays]
gi|238010124|gb|ACR36097.1| unknown [Zea mays]
Length = 587
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/597 (67%), Positives = 472/597 (79%), Gaps = 35/597 (5%)
Query: 130 MDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRK 189
MDLGR+P+ARFPSGDW IS+Q V +DL+ A++KVGDFS+DNRSGI+ SLHRISAIRNRK
Sbjct: 1 MDLGRRPIARFPSGDWAISDQPVTADDLRQAVAKVGDFSEDNRSGINHSLHRISAIRNRK 60
Query: 190 MQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRV 249
Q+IGLTCRVGRA++GSAE+I DLV GGSILVIGPPGVGKTTLIREIAR+LAD+ KRV
Sbjct: 61 AQIIGLTCRVGRAISGSAEMIRDLVVSGGSILVIGPPGVGKTTLIREIARILADEGKKRV 120
Query: 250 VIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELE 309
+IVDTSNEIGGDGDVPHSGIGRARRMQVP V MQH+VMIEAVENHMPE I+IDEIGTELE
Sbjct: 121 IIVDTSNEIGGDGDVPHSGIGRARRMQVPKVTMQHNVMIEAVENHMPEVIVIDEIGTELE 180
Query: 310 ALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILE 369
A+AA+TIAQRGVQLVGTAHG+TI++I+KNP LQ+LVGGIESVTLGDEEAKKRKVQKTILE
Sbjct: 181 AMAATTIAQRGVQLVGTAHGVTIESIIKNPCLQMLVGGIESVTLGDEEAKKRKVQKTILE 240
Query: 370 RKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQM---DAEHHEPLKVTP 426
RKGPPTF CAVEMIS+TECRVHHRLDATVDAILAGK P FE R+M E PL V P
Sbjct: 241 RKGPPTFLCAVEMISKTECRVHHRLDATVDAILAGKPPKFEARKMHNKSTEFEMPL-VIP 299
Query: 427 ILRG---SYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSI------------KR 471
S P E+ + + + SD + D+ AS Q K++S+ R
Sbjct: 300 DREYEIESLPLYQEVMV----TRSLSSDGNFSDDFAASRQTKSKSMPSEDNFGDNFVYTR 355
Query: 472 SVRKPSPP-----VCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQ 526
+ P V VYTY+I EAD+LQVA +MG +DE+DVTDDIG AD ILASSSEMKQ
Sbjct: 356 KAKGNKPVHGKSLVQVYTYQISEADILQVATMMGFDDELDVTDDIGAADVILASSSEMKQ 415
Query: 527 NPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAP 586
NPWI VAK+H+LP+FV+K+NTMAQ+VKA+RMI+G ++ + SK P +IEIEDDAP
Sbjct: 416 NPWIHNVAKYHKLPIFVVKTNTMAQIVKAIRMIVGRDNTSS-SKQPEVMEGEIEIEDDAP 474
Query: 587 KRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTE 646
KRKP+LEEIDALEE RLAIEYIVIPGGE VELLPR SEIVARQLELVESYQL AE G++
Sbjct: 475 KRKPSLEEIDALEEARLAIEYIVIPGGEPVELLPRCSEIVARQLELVESYQLLAETFGSD 534
Query: 647 LNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSD--AGTSFTRLPFLPE 701
N RLQILP+++ K +S ++G++ P + G L S+ G+SF+RLPFLP+
Sbjct: 535 SNSRLQILPMKITKR----GSSKDNGASKPTKQTGSDLIVSENGGGSSFSRLPFLPK 587
>gi|224109840|ref|XP_002315329.1| predicted protein [Populus trichocarpa]
gi|222864369|gb|EEF01500.1| predicted protein [Populus trichocarpa]
Length = 542
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/547 (74%), Positives = 460/547 (84%), Gaps = 8/547 (1%)
Query: 1 MITLNSRFMLIDINSSWHSANQAPISTLKYIQNTNFITSFSSSFRRTRRARKTFVSQK-P 59
M ++NSRF+LID+ SS +SA Q P+ST ++++ +SSFR+TR ++ S K P
Sbjct: 1 MRSMNSRFLLIDLQSSCYSARQIPLST-----TLTYLSTITSSFRQTRGVQRRIASSKSP 55
Query: 60 TPPSIHPPTVRRPSDWAPPRNGSVSDSPNSASTSR-SGADIELELFLELLPSRMRRELCM 118
TP + P +RRP D NGSV D NSASTS ++ EL+LFLELLP RM+ EL
Sbjct: 56 TPSVVRAPEIRRPGDRYRTGNGSVIDLENSASTSSLVNSNSELDLFLELLPLRMKGELSG 115
Query: 119 HRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRS 178
HRE+G+LIEVV+DLGRKP+ARFPSGD+VI EQ V+HEDLKHAISKVGDFSDDNRSGID S
Sbjct: 116 HREIGELIEVVLDLGRKPIARFPSGDFVICEQPVRHEDLKHAISKVGDFSDDNRSGIDSS 175
Query: 179 LHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
LHRISAIRNRKMQ+IGLTCRVGRAV+GSAEII DLVEGG SILVIG PGVGKTTLIREIA
Sbjct: 176 LHRISAIRNRKMQIIGLTCRVGRAVSGSAEIIRDLVEGGSSILVIGRPGVGKTTLIREIA 235
Query: 239 RMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPET 298
RMLADD KRVVIVDTSNEIGGDGDVPH+GIGRARRMQVPNVNMQH++MIEAVENHMPET
Sbjct: 236 RMLADDQRKRVVIVDTSNEIGGDGDVPHAGIGRARRMQVPNVNMQHNIMIEAVENHMPET 295
Query: 299 IIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358
IIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI+KNPSLQILVGGIESVTLGDEEA
Sbjct: 296 IIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIIKNPSLQILVGGIESVTLGDEEA 355
Query: 359 KKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEH 418
+KRKVQKTILERKGPPTFTCAVEMI+RTECRVHHRLDATVDAILAGK PLFE+R +D E
Sbjct: 356 RKRKVQKTILERKGPPTFTCAVEMITRTECRVHHRLDATVDAILAGKSPLFEIRHVDTEG 415
Query: 419 HEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP 478
+ LK+ PIL+ + EES+ ++N DK E + D EDEDY Q K + RK +
Sbjct: 416 DDSLKLIPILQENLIEESDDSLN-DKERCDEVESDEEDEDYCPKQSKTWKSSGTERKRNS 474
Query: 479 PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQ 538
PVCVYT +I+++DLLQVAKVMG+E+EIDVTDDIG ADAILASSSEMKQNPWIRGVAK+H
Sbjct: 475 PVCVYTCKIVDSDLLQVAKVMGIENEIDVTDDIGAADAILASSSEMKQNPWIRGVAKYHH 534
Query: 539 LPVFVIK 545
LPVFVIK
Sbjct: 535 LPVFVIK 541
>gi|30681303|ref|NP_850553.1| P-loop containing nucleoside triphosphate hydrolase family protein
[Arabidopsis thaliana]
gi|12322790|gb|AAG51387.1|AC011560_19 unknown protein; 108050-105786 [Arabidopsis thaliana]
gi|332641383|gb|AEE74904.1| P-loop containing nucleoside triphosphate hydrolase family protein
[Arabidopsis thaliana]
Length = 547
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/550 (69%), Positives = 432/550 (78%), Gaps = 15/550 (2%)
Query: 1 MITLNSRFMLIDINSSWHSANQAPISTLKYIQNTNFITSFSSSFRRTRRARKTFVSQKPT 60
M LNSR +LIDINSSW ++ + +T T F + SSSFRRTR AR+ S K
Sbjct: 1 MRALNSRLVLIDINSSWQASRRLISAT-----ATAFSSDSSSSFRRTRGARQRIASSKSP 55
Query: 61 PPSIHPPTVRRPSD---WAPPRNGSVSDSPNSASTSRSGADIELELFLELLPSRMRRELC 117
S VRRPSD + S S + S + + +EL+ FLE+LP R+EL
Sbjct: 56 ASSPS--PVRRPSDGFSFDVRSPSSDSSISSRKSPTTAPPTVELDAFLEILPPATRKELV 113
Query: 118 MHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDR 177
H + +LIEVVMDLGRKPLARFPSGDWVISEQ V H+DL+ A+SKVGDFSDDNRSGIDR
Sbjct: 114 KHEAIEELIEVVMDLGRKPLARFPSGDWVISEQPVTHQDLELAVSKVGDFSDDNRSGIDR 173
Query: 178 SLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREI 237
SLHRISAIRNRK+QVIGLTCRVGR V+GSAEII DL+EGGGSILVIG PGVGKTTLIREI
Sbjct: 174 SLHRISAIRNRKLQVIGLTCRVGRVVSGSAEIIRDLIEGGGSILVIGSPGVGKTTLIREI 233
Query: 238 ARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPE 297
ARMLAD+H KRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVN+QH VMIEAVENHMPE
Sbjct: 234 ARMLADEHRKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNLQHDVMIEAVENHMPE 293
Query: 298 TIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357
TIIIDEIGTELEALAASTIAQRGVQLV TAHGMTIDNI+KNPSLQIL+GGIESVTLGDEE
Sbjct: 294 TIIIDEIGTELEALAASTIAQRGVQLVATAHGMTIDNIIKNPSLQILIGGIESVTLGDEE 353
Query: 358 AKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAE 417
A+KRKVQKTILERKGPPTFTCAVEMISRTECRVH RLD TVDAILAGK FE+RQ+ E
Sbjct: 354 ARKRKVQKTILERKGPPTFTCAVEMISRTECRVHQRLDVTVDAILAGKSAPFEIRQIRGE 413
Query: 418 HHEPLK-VTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKP 476
P K VTPI + EE +N D +E+ SD+ EDED+ + N++ + P
Sbjct: 414 DDVPHKLVTPIPLENLEEEPAPLLNRDFVSELLSDD--EDEDFLLIR-SNKARSNTYTSP 470
Query: 477 -SPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAK 535
S PV VYTY +LEADLLQVA+VMGL+DEI+VTDD+G AD ILASSSE+KQN IR VAK
Sbjct: 471 RSSPVHVYTYNVLEADLLQVAEVMGLDDEIEVTDDVGEADVILASSSELKQNSSIRRVAK 530
Query: 536 FHQLPVFVIK 545
H+LP+FVIK
Sbjct: 531 LHKLPIFVIK 540
>gi|358346746|ref|XP_003637426.1| ATPase-like protein, partial [Medicago truncatula]
gi|355503361|gb|AES84564.1| ATPase-like protein, partial [Medicago truncatula]
Length = 493
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 343/510 (67%), Positives = 394/510 (77%), Gaps = 20/510 (3%)
Query: 1 MITLNSRFMLIDIN-SSWHSANQAPISTLKYIQNTNFITSFSSSFRRTRRARKTFVSQKP 59
M +NS +LID++ +SW N + N +SF S +RR K Q
Sbjct: 1 MRAINSHVVLIDLHCTSWQRNNN--------LNNKQLFSSFHRSSSSSRRLNKAI--QSS 50
Query: 60 TPPSIHPPTVRRPSDWAPPRNGSVSDSPNSASTSRSGADIELELFLELLPSRMRRELCMH 119
S P +RRPSD P RNGS + +T+ EL++FLELLP MR EL H
Sbjct: 51 KSSSSASPQIRRPSDRYPIRNGSSPSNLQPETTA------ELDMFLELLPLEMRMELYRH 104
Query: 120 RELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSL 179
+E+G LIEVVMDLGRKPLARFPSGDWVIS++ + H+DL+HAISKVG+FSDDNRSGID SL
Sbjct: 105 QEIGGLIEVVMDLGRKPLARFPSGDWVISQRPINHDDLRHAISKVGEFSDDNRSGIDSSL 164
Query: 180 HRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
HRISAIRNR+MQ+IGLTCRVGRAV+GSA+II DLVEGGGSILVIGPPGVGKTTLIRE AR
Sbjct: 165 HRISAIRNRQMQIIGLTCRVGRAVSGSAKIIHDLVEGGGSILVIGPPGVGKTTLIRETAR 224
Query: 240 MLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETI 299
MLAD+ +KRVVIVDTSNEIGGDGDVPH+GIGRARRMQVPNVNMQHS+MIEAVENHMPETI
Sbjct: 225 MLADEFLKRVVIVDTSNEIGGDGDVPHAGIGRARRMQVPNVNMQHSIMIEAVENHMPETI 284
Query: 300 IIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAK 359
IIDEIGTELEALAASTIAQRGVQLVGTAHG TI++I+KNP LQILVGGIESVTLGDEEA+
Sbjct: 285 IIDEIGTELEALAASTIAQRGVQLVGTAHGTTIESIMKNPYLQILVGGIESVTLGDEEAR 344
Query: 360 KRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHH 419
KRKVQKTILERKGPPTFTCAVEMIS+TECRVHHRLDATVDA+LAGK P+FEVR D +
Sbjct: 345 KRKVQKTILERKGPPTFTCAVEMISKTECRVHHRLDATVDALLAGKPPVFEVRHWDDFSN 404
Query: 420 EPLKVTPILRGSYPEESELTINEDK--SAEMESDEDSEDEDYASNQFKNRSIKRSVRKPS 477
+ +K PI S+ E S+L + S++ E DED + Y + K SV K S
Sbjct: 405 DLVKHAPIPEISHEETSDLNLTNTNITSSDREYDED-DTYYYPTRSMKWSDNSGSVIKRS 463
Query: 478 PPVCVYTYRILEADLLQVAKVMGLEDEIDV 507
P+ VYT +ILEADL+QVAKVMG ED I+V
Sbjct: 464 SPMQVYTCKILEADLVQVAKVMGFEDLIEV 493
>gi|110740513|dbj|BAE98362.1| hypothetical protein [Arabidopsis thaliana]
Length = 449
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 335/463 (72%), Positives = 376/463 (81%), Gaps = 19/463 (4%)
Query: 240 MLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETI 299
MLAD+H KRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVN+QH VMIEAVENHMPETI
Sbjct: 1 MLADEHRKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNLQHDVMIEAVENHMPETI 60
Query: 300 IIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAK 359
IIDEIGTELEALAASTIAQRGVQLV TAHGMTIDNI+KNPSLQIL+GGIESVTLGDEEA+
Sbjct: 61 IIDEIGTELEALAASTIAQRGVQLVATAHGMTIDNIIKNPSLQILIGGIESVTLGDEEAR 120
Query: 360 KRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHH 419
KRKVQKTILERKGPPTFTCAVEMISRTECRVH RLD TVDAILAGK FE+RQ+ E
Sbjct: 121 KRKVQKTILERKGPPTFTCAVEMISRTECRVHQRLDVTVDAILAGKSAPFEIRQIRGEDD 180
Query: 420 EPLK-VTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKP-S 477
P K VTPI + EE +N D +E+ SD+ EDED+ + N++ + P S
Sbjct: 181 VPHKLVTPIPLENLEEEPAPLLNRDFVSELLSDD--EDEDFLLIR-SNKARSNTYTSPRS 237
Query: 478 PPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFH 537
PV VYTY +LEADLLQVA+VMGL+DEI+VTDD+G AD ILASSSE+KQN IR VAK H
Sbjct: 238 SPVHVYTYNVLEADLLQVAEVMGLDDEIEVTDDVGEADVILASSSELKQNSSIRRVAKLH 297
Query: 538 QLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKST-SDIEIEDDAPKRKPTLEEID 596
+LP+FVIKS TMAQMVKAVRMILG ESFG+ K KS+ DIEI+DDAP+ KP+LEE+D
Sbjct: 298 KLPIFVIKSTTMAQMVKAVRMILGRESFGSAPKAIEKSSVDDIEIKDDAPESKPSLEELD 357
Query: 597 ALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPL 656
ALEEVRLAIEYIVIPGGE VELLPRRS+I+ RQLELVESYQLA EN GT LNPRLQILP
Sbjct: 358 ALEEVRLAIEYIVIPGGEPVELLPRRSDIIVRQLELVESYQLAVENLGTHLNPRLQILPR 417
Query: 657 RLNKNKKSFSNSSNSGSTSPKETLGKSLTSSDAGTSFTRLPFL 699
R KK+ + S+SP+++ S+ GT+ TRLPFL
Sbjct: 418 R--STKKTLT------SSSPQKSADGSM-----GTTGTRLPFL 447
>gi|302807180|ref|XP_002985303.1| hypothetical protein SELMODRAFT_181570 [Selaginella moellendorffii]
gi|300147131|gb|EFJ13797.1| hypothetical protein SELMODRAFT_181570 [Selaginella moellendorffii]
Length = 563
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 327/602 (54%), Positives = 420/602 (69%), Gaps = 52/602 (8%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
EL+ L +LP R+ R + H +L +++E+V+DLGR+P+ARFPSGDW +S++ V DL+
Sbjct: 7 ELQQLLSVLPERLERSVQNHPQLEEIVEIVLDLGRRPIARFPSGDWSMSQEPVTIADLED 66
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
AI VGDF DDNR+GIDR+LHRISAIRNR +++GLTCRVGRAV GSAE+ DLV G S
Sbjct: 67 AICMVGDFVDDNRAGIDRTLHRISAIRNRGGRIVGLTCRVGRAVTGSAEMARDLVSSGAS 126
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++GPPGVGKTT IRE+ARMLADD+ +RVVIVDTSNEI GDGD+PH GIGRARRMQV N
Sbjct: 127 LLLMGPPGVGKTTAIREVARMLADDYDRRVVIVDTSNEIAGDGDIPHPGIGRARRMQVTN 186
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
V +QH +MIEAVENHMPETI+IDEIGTELEA AA TIAQRGVQLV TAHG +++N++KNP
Sbjct: 187 VGLQHKIMIEAVENHMPETIVIDEIGTELEAAAAVTIAQRGVQLVATAHGTSVENLIKNP 246
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
SL+ILVGGI+SVTLGD+EA++R VQK++LERKGPP F+ A+EM SRTE R+HH L AT+D
Sbjct: 247 SLEILVGGIQSVTLGDDEARRRGVQKSVLERKGPPAFSTAIEMASRTEWRIHHSLTATID 306
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
A+LAG+ P E+R M + G+ PEE + +N+ ++ E + + +D
Sbjct: 307 ALLAGRSPSIEIRNMKDKE-----------GTAPEELPV-LNQIENEEKDVFKKLQDNGS 354
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
S F +Y Y+I E L Q +V+ LE+ I V DIG ADA+L
Sbjct: 355 ESKLF----------------SLYPYQISEEFLKQAIEVLELEETIGVASDIGAADAVLT 398
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESF-GTISKLPNKSTSD 578
S++++N W+R +AKF QLPVF IK+NT+AQM++A R +L ME GT S ST
Sbjct: 399 LRSKLRENVWVRNIAKFRQLPVFAIKANTLAQMIRATRAVLEMEMLRGTSS-----STRK 453
Query: 579 IEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQL 638
++ED EIDALEE RLAIE IVI G+AVELLPR + I A Q+ L ESYQL
Sbjct: 454 SKVED----------EIDALEEARLAIEQIVIAKGQAVELLPRSAGITALQIRLAESYQL 503
Query: 639 AAENSGTELNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSDAGTSFTRLPF 698
A+E SG E RL+ILPL +++S S ++ +S G GTS ++LP
Sbjct: 504 ASETSGIEPKVRLRILPLLQQGSRQSSSINNTKEESSQGRVQG--------GTSVSKLPL 555
Query: 699 LP 700
LP
Sbjct: 556 LP 557
>gi|168013314|ref|XP_001759346.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689659|gb|EDQ76030.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 546
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 317/536 (59%), Positives = 407/536 (75%), Gaps = 12/536 (2%)
Query: 130 MDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRK 189
+DLGR+PLARFPSGDW +SE V +DL+HAIS G+F DDNR+GIDR+LHR+SA+R R
Sbjct: 1 LDLGRRPLARFPSGDWYVSESKVTAQDLQHAISMTGEFGDDNRAGIDRTLHRVSAMRTRS 60
Query: 190 MQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRV 249
V+GLTCRVGRA++GSAE++ DL+ S+L++GPPGVGKTT IREIARMLAD++ KRV
Sbjct: 61 GSVVGLTCRVGRAISGSAEMVRDLIASSSSLLLMGPPGVGKTTAIREIARMLADEYHKRV 120
Query: 250 VIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELE 309
VIVDTSNEI GDGD+PH+GIG ARRMQVP V++QH VMIEAVENHMP+ I+IDEIGTELE
Sbjct: 121 VIVDTSNEIAGDGDIPHAGIGMARRMQVPKVDLQHKVMIEAVENHMPQVIVIDEIGTELE 180
Query: 310 ALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILE 369
A+AA TIAQRGVQLVGTAHGMT++N++KNPSLQ L GGI+SVTLGDEEA++R+VQK++LE
Sbjct: 181 AVAAGTIAQRGVQLVGTAHGMTVENLIKNPSLQNLAGGIQSVTLGDEEARRRRVQKSVLE 240
Query: 370 RKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKVTPILR 429
R+GPP FT A EMISRTE RVH L ATVDA+LAGK P EVR+M+ E +V
Sbjct: 241 RQGPPVFTSACEMISRTEWRVHRSLAATVDALLAGKSPRVEVRKMN----ENGQVVVGNL 296
Query: 430 GSYPEESE---LTINEDKSAEMESDEDSEDEDYASNQ--FKNRSIKRSVRKPSPPVCVYT 484
YP S T S +++ ++ E++DYA +N +++ + + P+ +Y
Sbjct: 297 AEYPSPSRPGSSTSGSSSSYDLDWTDNYEEDDYAGGDTGAENAAVQ-AWERSDAPILLYL 355
Query: 485 YRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVI 544
+ + E L QV VMGLE+ + +T+DIG ADA+LA S++K N W+RG+AKF QLP+FVI
Sbjct: 356 HEVTEESLEQVMDVMGLENTVQITEDIGAADAVLALRSKLKLNSWVRGMAKFRQLPIFVI 415
Query: 545 KSNTMAQMVKAVRMILGMESFGTISKLPNK-STSDIEIEDDAPKRKP-TLEEIDALEEVR 602
K+NTMAQMV+A+R I+ MES G S N+ D E + R+P + EEIDALEE R
Sbjct: 416 KANTMAQMVRAMRAIMSMESLGNNSLGSNRLRGDDGEKSESIIHRQPNSAEEIDALEEAR 475
Query: 603 LAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRL 658
+A+E IVIP +AVELLPR E++A Q++LVESYQLA E +G+ +N RL+ILP +L
Sbjct: 476 VAVEQIVIPKVQAVELLPRSPEVLALQVKLVESYQLAWEKTGSGMNKRLRILPKQL 531
>gi|302773391|ref|XP_002970113.1| hypothetical protein SELMODRAFT_410877 [Selaginella moellendorffii]
gi|300162624|gb|EFJ29237.1| hypothetical protein SELMODRAFT_410877 [Selaginella moellendorffii]
Length = 736
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 317/558 (56%), Positives = 400/558 (71%), Gaps = 44/558 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
EL+ L +LP R+ R + H +L +++E+V+DLGR+P+ARFPSGDW IS++ V DL+
Sbjct: 32 ELQQLLSVLPERLERSVQNHPQLEEIVEIVLDLGRRPIARFPSGDWSISQEPVTIADLED 91
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
AI VGDF+DDNR+GIDR+LHRISAIRNR +++GLTCRVGRAV GSAE+ DLV G S
Sbjct: 92 AICMVGDFADDNRAGIDRTLHRISAIRNRGGRIVGLTCRVGRAVTGSAEMARDLVSSGAS 151
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++GPPGVGKTT IRE+ARMLADD+ +RVVIVDTSNEI GDGD+PH GIGRARRMQV N
Sbjct: 152 LLLMGPPGVGKTTAIREVARMLADDYDRRVVIVDTSNEIAGDGDIPHPGIGRARRMQVTN 211
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
V +QH +MIEAVENHMPETI+IDEIGTELEA AA TIAQRGVQLV TAHG +++N++KNP
Sbjct: 212 VGLQHKIMIEAVENHMPETIVIDEIGTELEAAAAVTIAQRGVQLVATAHGTSVENLIKNP 271
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
SL+ILVGGI+SVTLGD+EA++R VQK++LERKGPP F+ A+EM SRTE R+HH L AT+D
Sbjct: 272 SLEILVGGIQSVTLGDDEARRRGVQKSVLERKGPPAFSTAIEMASRTEWRIHHSLTATID 331
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
A+LAG+ P E+R M + G+ PEE + + ++ED+D+
Sbjct: 332 ALLAGRSPSIEIRNMKDKE-----------GTAPEELPVL----------NQIENEDKDF 370
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
N S +Y Y+I E L Q +V+ LE+ I V DIG ADA+L
Sbjct: 371 FKKLQDNGS-------EGKLFSLYPYQISEELLKQAIEVLELEETIGVASDIGAADAVLT 423
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESF-GTISKLPNKSTSD 578
S++++N W+R +AKF QLPVF IK+NT+AQM++A R +L ME GT S ST
Sbjct: 424 LRSKLRENVWVRNIAKFRQLPVFAIKANTLAQMIRATRAVLEMEMLRGTSS-----STRK 478
Query: 579 IEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQL 638
++ED EIDALEE RLAIE IVI G+AVELLPR + I A Q+ L ESYQL
Sbjct: 479 SKVED----------EIDALEEARLAIEQIVIAKGQAVELLPRSAGITALQIRLAESYQL 528
Query: 639 AAENSGTELNPRLQILPL 656
A+E SG E RL+ILPL
Sbjct: 529 ASETSGIEPKVRLRILPL 546
>gi|255557073|ref|XP_002519569.1| Stage III sporulation protein AA, putative [Ricinus communis]
gi|223541266|gb|EEF42818.1| Stage III sporulation protein AA, putative [Ricinus communis]
Length = 726
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 314/647 (48%), Positives = 443/647 (68%), Gaps = 45/647 (6%)
Query: 77 PPRNGSVSDSPNSASTSRS------------------GADIELELFLELLPSRMRRELCM 118
PP++ ++ + NSA T+R+ D+EL + LLP MRR +
Sbjct: 103 PPKSNALFSASNSAYTNRNPIPAATSTISSASPSPHDDFDMELARLVALLPEEMRRRVSE 162
Query: 119 HRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRS 178
H EL DL+EVVMDLGR+PLARFPSGD+V+S+ V +D++HA S+VGDF+ DNR+GI R+
Sbjct: 163 HSELHDLVEVVMDLGRRPLARFPSGDFVLSDCPVTLQDIEHATSQVGDFAIDNRAGISRT 222
Query: 179 LHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
LHRISAIRNRK +IGLTCRVGRA+ GS ++ DL++ G S+L+IGPPGVGKTT+IREIA
Sbjct: 223 LHRISAIRNRKGHIIGLTCRVGRAIPGSTSLLRDLIQDGSSLLLIGPPGVGKTTIIREIA 282
Query: 239 RMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPET 298
RMLA D+ KRV+IVDTSNEIGGDGD+PH+GIG ARRMQVPN + QH V+IEAVENHMP+
Sbjct: 283 RMLATDYKKRVMIVDTSNEIGGDGDIPHAGIGNARRMQVPNSDKQHKVLIEAVENHMPQV 342
Query: 299 IIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358
I+IDEIGT+LEA+AASTIAQRG+QLV T+HG+TI+N++ NPSL++LVGGI+SVTLGDEEA
Sbjct: 343 IVIDEIGTKLEAMAASTIAQRGIQLVATSHGVTIENLIVNPSLEMLVGGIQSVTLGDEEA 402
Query: 359 KKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEH 418
+R VQKT+LERKGP TF+CAVE+I++ E RVH L+ATVDAIL+G+ P EVR+MD++
Sbjct: 403 NRRGVQKTVLERKGPSTFSCAVEIIAKNELRVHRSLEATVDAILSGRPPNVEVRKMDSQG 462
Query: 419 HEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRS---IKRSVRK 475
E +++ P + S ++ E++ D +DE + F + S ++ + +
Sbjct: 463 KETVRIEPSIDASAQKKDEISFE---------DLQMKDERISGGGFISESPPYMRENSLE 513
Query: 476 PSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAK 535
P+ +Y Y I EA ++Q + ++ + +TD+I ADA+LA S++K+NP I+ A+
Sbjct: 514 DEAPLRLYVYGIPEASVIQGTNQLKIDTVVQLTDNISEADALLALHSKLKKNPGIQAAAE 573
Query: 536 FHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTL-EE 594
H +P++V K+N++ Q+ KA+R++ S D E++D + E+
Sbjct: 574 SHDIPIYVTKTNSLVQITKAIRVL--------------ASDWDNELKDSRSEDSAKFSEK 619
Query: 595 IDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQIL 654
DALEE R+AIE +VIP GE VELLPR S I++ Q++ ++ YQL AE GT + ++IL
Sbjct: 620 TDALEETRIAIEQVVIPKGEPVELLPRPSNIISVQMDFIQKYQLQAEKIGTAPDIHIRIL 679
Query: 655 PLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSDAGTSFTRLPFLPE 701
P + + + S+ + + ++LG S S+ + RLP LP+
Sbjct: 680 PYQTWLDNRLESSETVDVDSRFDDSLGTSDDSNGSTHMVDRLPLLPD 726
>gi|225461612|ref|XP_002282987.1| PREDICTED: uncharacterized protein ycf45 [Vitis vinifera]
Length = 667
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 327/655 (49%), Positives = 444/655 (67%), Gaps = 39/655 (5%)
Query: 62 PSIHPPTVRRPSDWAP------PR---NGSVSDSPNSASTSRSGADIELELFLELLPSRM 112
P+IH P P PR N +S SAS ++EL+ L LLP M
Sbjct: 37 PTIHSSPFSSPLRILPAKFSGYPRKFPNSLLSSYLASASAGEDEFEVELDRLLALLPEEM 96
Query: 113 RRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNR 172
RR + H EL LIEVVMDLGRKPLARFPSGD+V+S+ + +D++ A S+VGDF+ DNR
Sbjct: 97 RRRVSEHPELHQLIEVVMDLGRKPLARFPSGDFVLSDCPITVQDIEFATSQVGDFAIDNR 156
Query: 173 SGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTT 232
+GI R+LHRISAIRNRK +IGLTCRVGRA++GSA ++ DLV+ G S+L+IGPPGVGKTT
Sbjct: 157 AGISRTLHRISAIRNRKGAIIGLTCRVGRAISGSANLLQDLVKDGASLLLIGPPGVGKTT 216
Query: 233 LIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVE 292
+IRE+ARMLA+D+ KRV+IVDTSNEIGGDGD+PH+GIG ARRMQVPN +MQH V+IEAVE
Sbjct: 217 IIREVARMLANDYKKRVMIVDTSNEIGGDGDIPHAGIGNARRMQVPNSDMQHKVLIEAVE 276
Query: 293 NHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVT 352
NHMP+ I+IDEIGT+LEA+AASTIAQRG+QLV TAHG+TI+N++ NPSL++LVGGI+SVT
Sbjct: 277 NHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNPSLEMLVGGIQSVT 336
Query: 353 LGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVR 412
LGDEEA +R VQKT+LERKGP TF+C VE+IS+TE +VH L+ATVDAIL+G+ P FEVR
Sbjct: 337 LGDEEASRRGVQKTVLERKGPSTFSCGVEIISKTELQVHPSLEATVDAILSGRFPHFEVR 396
Query: 413 QMDAEHHE-PLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKR 471
+++++ E ++ + S E++E+ + EM + + DE +
Sbjct: 397 KINSQGVENKVQSEAFVHNSSDEKNEVV---EDGLEMNEESSTLDELICE---PPPDMGG 450
Query: 472 SVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIR 531
S + + PV V+ Y ILE ++Q K + + D++++TD+I ADA+LA S++K+N I+
Sbjct: 451 SSAQDTSPVRVFAYGILETSVIQGIKQLKMNDKVELTDNISEADALLALQSKLKKNSRIQ 510
Query: 532 GVAKFHQLPVFVIKSNTMAQMVKAVRMILG-----MESFGTISKLPNKSTSDIEIEDDAP 586
AK H +P++V K+ ++ Q+ KAVR IL ++ FG+ K+ N S
Sbjct: 511 AAAKSHDIPIYVTKTCSLVQITKAVRAILNGHADDLKDFGSEDKI-NLS----------- 558
Query: 587 KRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTE 646
E IDALEE RLAIE +VIP GE VELLPR S I+ Q +L+ Y+L +E GTE
Sbjct: 559 ------ERIDALEEARLAIEQVVIPKGEPVELLPRPSHIMLLQRDLIRKYKLQSEKIGTE 612
Query: 647 LNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSDAGTSFTRLPFLPE 701
+ RL+ILP + ++ ++ S+ + + + + + RLP LPE
Sbjct: 613 PDVRLRILPFQTRTDEDRHTSESDGLDSGLDDFICSKNGTIGTPNTVDRLPLLPE 667
>gi|147816324|emb|CAN66201.1| hypothetical protein VITISV_007543 [Vitis vinifera]
Length = 693
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 326/655 (49%), Positives = 442/655 (67%), Gaps = 39/655 (5%)
Query: 62 PSIHPPTVRRPSDWAP------PR---NGSVSDSPNSASTSRSGADIELELFLELLPSRM 112
P+IH P P PR N +S SAS ++EL+ L LLP M
Sbjct: 63 PTIHSSPFSSPLRILPAKFSGYPRKFPNSLLSSYLASASAGEDEFEVELDRLLALLPEEM 122
Query: 113 RRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNR 172
RR + H EL LIEVVMDLGRKPLARFPSGD+V+S+ + +D+K A S+VGDF+ DNR
Sbjct: 123 RRRVSEHPELHQLIEVVMDLGRKPLARFPSGDFVLSDCPITVQDIKFATSQVGDFAIDNR 182
Query: 173 SGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTT 232
+GI R+LHRISAIRNRK +IGLTCRVGRA++GSA ++ DLV+ G S+L+IGPPGVGKTT
Sbjct: 183 AGISRTLHRISAIRNRKGAIIGLTCRVGRAISGSANLLQDLVKDGASLLLIGPPGVGKTT 242
Query: 233 LIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVE 292
+IRE+ARMLA+D+ KRV+IVDTSNEIGGDGD+PH+GIG ARRMQVPN +MQH V+IEAVE
Sbjct: 243 IIREVARMLANDYKKRVMIVDTSNEIGGDGDIPHAGIGNARRMQVPNSDMQHKVLIEAVE 302
Query: 293 NHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVT 352
NHMP+ I+IDEIGT+LEA+AASTIAQRG+QLV TAHG+TI+N++ NPSL++LVGGI+SVT
Sbjct: 303 NHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNPSLEMLVGGIQSVT 362
Query: 353 LGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVR 412
LG EEA +R VQ T+LERKGP TF+C VE+IS+TE +VH L+ATVDAIL+G+ P FEVR
Sbjct: 363 LGXEEASRRGVQXTVLERKGPSTFSCGVEIISKTELQVHPSLEATVDAILSGRFPHFEVR 422
Query: 413 QMDAEHHE-PLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKR 471
+++++ E ++ + S E++E+ + EM + + DE +
Sbjct: 423 KINSQGVENKVQSEAFVHNSSDEKNEVV---EDGLEMNEESSTLDELICE---PPPDMGG 476
Query: 472 SVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIR 531
S + + PV V+ Y ILE ++Q K + + D++++TD+I ADA+LA S++K+N I+
Sbjct: 477 SSAQDTSPVRVFAYGILETSVIQGIKQLKMNDKVELTDNISEADALLALQSKLKKNSRIQ 536
Query: 532 GVAKFHQLPVFVIKSNTMAQMVKAVRMILG-----MESFGTISKLPNKSTSDIEIEDDAP 586
AK H +P++V K+ ++ Q+ KAVR IL ++ FG+ K+ N S
Sbjct: 537 AAAKSHDIPIYVTKTCSLVQITKAVRAILNGHADDLKDFGSEDKI-NLS----------- 584
Query: 587 KRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTE 646
E IDALEE RLAIE +VIP GE VELLPR S I+ Q +L+ Y+L +E GTE
Sbjct: 585 ------ERIDALEEARLAIEQVVIPKGEPVELLPRPSHIMLLQRDLIRKYKLQSEKIGTE 638
Query: 647 LNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSDAGTSFTRLPFLPE 701
+ RL+ILP + ++ ++ S+ + + + + + RLP LPE
Sbjct: 639 PDVRLRILPFQTRTDEDRHTSESDGLDSGLDDFICSKNGTIGTPNTVDRLPLLPE 693
>gi|356514603|ref|XP_003525995.1| PREDICTED: uncharacterized protein ycf45-like [Glycine max]
Length = 651
Score = 587 bits (1512), Expect = e-164, Method: Compositional matrix adjust.
Identities = 316/615 (51%), Positives = 425/615 (69%), Gaps = 39/615 (6%)
Query: 98 DIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDL 157
D+EL L LLP MRR + H EL LIEVVMDLGRKPLARFP+GD+VISE + +D+
Sbjct: 65 DVELGRLLALLPEEMRRRVSDHPELPQLIEVVMDLGRKPLARFPTGDFVISEYPITVQDI 124
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+HA ++VGDF+ DNR+GI R+LHRISAIRNRK +IGLTCRVGRA++GSA+++ DL++ G
Sbjct: 125 EHATAQVGDFAIDNRAGISRTLHRISAIRNRKGTIIGLTCRVGRAISGSAKLLQDLIQDG 184
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
S+L+IGPPGVGKTT+IREIARMLA+D+ KRV+IVDTSNEIGGDGD+PH+GIG ARRMQV
Sbjct: 185 ASLLLIGPPGVGKTTIIREIARMLANDYKKRVMIVDTSNEIGGDGDIPHAGIGNARRMQV 244
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
PN +MQH V+IEAVENHMP+ I+IDEIGT+LEA+AASTIAQRG+QLV TAHG+TI+N++
Sbjct: 245 PNSDMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGITIENLIM 304
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NPSL++LVGGI+SVTLGDEEA +R VQKT+LERKGP TF+C VE+IS+TE R+H L+AT
Sbjct: 305 NPSLEMLVGGIQSVTLGDEEASRRGVQKTVLERKGPSTFSCGVEIISKTELRIHRSLEAT 364
Query: 398 VDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDE 457
VDAIL+G+ P E+R+M ++ E IL+ +S L K+ E+ ++ ++
Sbjct: 365 VDAILSGRFPNVEIRKMKSQEQE-----EILQDGLVSDSSL----QKNGEIMFEKATKGS 415
Query: 458 DYASNQFKNRSIKR-------SVRKPSPPVCVYTYRILEADLLQVAKVMGLED-EIDVTD 509
D +NQ N S+ + + P+ ++ Y ILEA ++Q K + + D I +TD
Sbjct: 416 DDQTNQ--NESLLKLPIDLVEDSWQLKLPLSLFCYGILEATVIQGVKQLKMNDAAIQLTD 473
Query: 510 DIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTIS 569
+I A+A+LA S++K+NP I+ AK H +P++V K++++ + KA+R ++ G
Sbjct: 474 NISEANALLALQSKLKKNPGIQAAAKSHDIPIYVTKTSSLEHVAKAIRALVSDHEDG--- 530
Query: 570 KLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQ 629
D E+ D + + E IDALEE R+AIE+ VI GE V+LLPR S I++ Q
Sbjct: 531 ------IKDSELTD----KIKSSEMIDALEEARMAIEHTVILKGEPVDLLPRSSHIISLQ 580
Query: 630 LELVESYQLAAENSGTELNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSDA 689
LELV YQL + L+ILP ++ S +S S E L ++
Sbjct: 581 LELVRKYQLETRRISGDSGVHLRILPSHYETDEVKTSETSEFDS----ELLDDFASNGSV 636
Query: 690 GTSFT---RLPFLPE 701
SF RLP LPE
Sbjct: 637 NGSFNSLDRLPLLPE 651
>gi|224056549|ref|XP_002298905.1| predicted protein [Populus trichocarpa]
gi|222846163|gb|EEE83710.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 586 bits (1511), Expect = e-164, Method: Compositional matrix adjust.
Identities = 310/611 (50%), Positives = 429/611 (70%), Gaps = 28/611 (4%)
Query: 96 GADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHE 155
G ++EL L LLP MR+ + H EL DL+EVVMDLGRKPLARFPSGD+V+S+ + +
Sbjct: 67 GFEVELGRLLALLPQEMRKRVSEHPELLDLVEVVMDLGRKPLARFPSGDFVLSDCPITLQ 126
Query: 156 DLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVE 215
DL+HA S+VGDF+ DNR+GI ++LHRISAIRNR+ Q+IGLTCRVGRA+ GSA ++ DLV
Sbjct: 127 DLQHATSQVGDFAIDNRAGISQTLHRISAIRNREGQIIGLTCRVGRAIPGSASLLRDLVH 186
Query: 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRM 275
G S+L IGPPGVGKTT+IREIARMLA+D+ KRV+IVDTSNEIGGDGD+PH+GIG ARRM
Sbjct: 187 DGASLLFIGPPGVGKTTIIREIARMLANDYKKRVMIVDTSNEIGGDGDIPHAGIGNARRM 246
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
QVP+++MQH V+IEAVENHMP+ I+IDEIGT+LEA+AASTIAQRG+QLV TAHG+TI+N+
Sbjct: 247 QVPDLDMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGITIENL 306
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLD 395
+ NPSL++LVGGI+SVTLGDEEA +R VQKT+LERKGP TF+C VE+IS+TE RVH L+
Sbjct: 307 ILNPSLEMLVGGIQSVTLGDEEANRRGVQKTVLERKGPSTFSCGVEIISKTELRVHRSLE 366
Query: 396 ATVDAILAGKLPLFEVRQMDAEH-HEPLKVTPILRGSYPEESELTINEDKSAEMESDEDS 454
ATVDAIL+G+ P EV +M ++ + ++ P + S ++ E+ + ED E +
Sbjct: 367 ATVDAILSGRSPHVEVCKMSSQGVKKTIEREPAFQTSAEKKDEVLV-EDFHLTDERIGHN 425
Query: 455 EDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTA 514
E + + S++ V P+C+Y Y ILE ++Q + ++ + +TD+I A
Sbjct: 426 ELTSESPPDMGDNSLEHEV-----PLCLYVYGILETSVIQGINQLKMDAAVRLTDNISDA 480
Query: 515 DAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNK 574
DA+LA S++K+N I+ AK H +P++V K++++ Q+ KA+R ++ + G
Sbjct: 481 DALLALQSKLKKNAKIQAAAKSHDIPIYVTKTSSLEQITKAIRALMSSHANG-------- 532
Query: 575 STSDIEIEDDAPKRKPTL-EEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELV 633
++D + L E+IDALEE R+A+ +VIP GE VELLPR S I++ Q++ +
Sbjct: 533 ------LKDSRTEENTKLSEKIDALEEARIAVMQVVIPKGEPVELLPRSSHIMSLQIDFI 586
Query: 634 ESYQLAAENSGTELNPRLQILPL--RLNKNKKSFSN-SSNSGSTSPKETLGKSLTSSDAG 690
YQL E GTE RL+ILP R++ N K ++SG + + + ++ +
Sbjct: 587 RKYQLETERIGTEPEARLRILPYQTRMDVNNKFIETIGTDSGV---DDFISATGDTNGSP 643
Query: 691 TSFTRLPFLPE 701
S RLP LP+
Sbjct: 644 YSTDRLPLLPD 654
>gi|302142922|emb|CBI20217.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 310/603 (51%), Positives = 422/603 (69%), Gaps = 44/603 (7%)
Query: 112 MRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDN 171
MRR + H EL LIEVVMDLGRKPLARFPSGD+V+S+ + +D++ A S+VGDF+ DN
Sbjct: 1 MRRRVSEHPELHQLIEVVMDLGRKPLARFPSGDFVLSDCPITVQDIEFATSQVGDFAIDN 60
Query: 172 RSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKT 231
R+GI R+LHRISAIRNRK +IGLTCRVGRA++GSA ++ DLV+ G S+L+IGPPGVGKT
Sbjct: 61 RAGISRTLHRISAIRNRKGAIIGLTCRVGRAISGSANLLQDLVKDGASLLLIGPPGVGKT 120
Query: 232 TLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAV 291
T+IRE+ARMLA+D+ KRV+IVDTSNEIGGDGD+PH+GIG ARRMQVPN +MQH V+IEAV
Sbjct: 121 TIIREVARMLANDYKKRVMIVDTSNEIGGDGDIPHAGIGNARRMQVPNSDMQHKVLIEAV 180
Query: 292 ENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESV 351
ENHMP+ I+IDEIGT+LEA+AASTIAQRG+QLV TAHG+TI+N++ NPSL++LVGGI+SV
Sbjct: 181 ENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNPSLEMLVGGIQSV 240
Query: 352 TLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEV 411
TLGDEEA +R VQKT+LERKGP TF+C VE+IS+TE +VH L+ATVDAIL+G+ P FEV
Sbjct: 241 TLGDEEASRRGVQKTVLERKGPSTFSCGVEIISKTELQVHPSLEATVDAILSGRFPHFEV 300
Query: 412 RQMDAEHHE-PLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDE-------DYASNQ 463
R+++++ E ++ + S E++E+ + EM + + DE D +
Sbjct: 301 RKINSQGVENKVQSEAFVHNSSDEKNEVV---EDGLEMNEESSTLDELICEPPPDMGGSS 357
Query: 464 FKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSE 523
++ S PV V+ Y ILE ++Q K + + D++++TD+I ADA+LA S+
Sbjct: 358 AQDTS----------PVRVFAYGILETSVIQGIKQLKMNDKVELTDNISEADALLALQSK 407
Query: 524 MKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILG-----MESFGTISKLPNKSTSD 578
+K+N I+ AK H +P++V K+ ++ Q+ KAVR IL ++ FG+ K+ N S
Sbjct: 408 LKKNSRIQAAAKSHDIPIYVTKTCSLVQITKAVRAILNGHADDLKDFGSEDKI-NLS--- 463
Query: 579 IEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQL 638
E IDALEE RLAIE +VIP GE VELLPR S I+ Q +L+ Y+L
Sbjct: 464 --------------ERIDALEEARLAIEQVVIPKGEPVELLPRPSHIMLLQRDLIRKYKL 509
Query: 639 AAENSGTELNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSDAGTSFTRLPF 698
+E GTE + RL+ILP + ++ ++ S+ + + + + + RLP
Sbjct: 510 QSEKIGTEPDVRLRILPFQTRTDEDRHTSESDGLDSGLDDFICSKNGTIGTPNTVDRLPL 569
Query: 699 LPE 701
LPE
Sbjct: 570 LPE 572
>gi|115466506|ref|NP_001056852.1| Os06g0155600 [Oryza sativa Japonica Group]
gi|55296694|dbj|BAD69412.1| ATPase-like [Oryza sativa Japonica Group]
gi|55297449|dbj|BAD69300.1| ATPase-like [Oryza sativa Japonica Group]
gi|113594892|dbj|BAF18766.1| Os06g0155600 [Oryza sativa Japonica Group]
Length = 643
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 330/668 (49%), Positives = 437/668 (65%), Gaps = 55/668 (8%)
Query: 48 RRARKTFVSQKPTPPSIHP--PTVRRPSDWAPPRNGSVSDSPNSASTSRSGADIELELFL 105
RRA F S P ++ P RR APPR +A G + E+ L
Sbjct: 17 RRAPYGFRSAAPRRIAVCPLLSVGRRRRLGAPPR---------AARGGGEGPEEEMRRLL 67
Query: 106 ELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVG 165
ELLP +RR + H EL L+EVVMDLGR PLARFPSGD+++S+ + +DL+HA S+VG
Sbjct: 68 ELLPGELRRRVEGHPELPALVEVVMDLGRPPLARFPSGDFLLSQSPISFDDLRHATSQVG 127
Query: 166 DFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGP 225
DF DNR+GI R+LHRISAIRNRK +IGLTCRVGRAV GSA ++ DLV+ GGS+L+IGP
Sbjct: 128 DFGADNRAGISRTLHRISAIRNRKGAIIGLTCRVGRAVPGSANLLQDLVKDGGSLLLIGP 187
Query: 226 PGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHS 285
PGVGKTT+IREIARMLADD+ KRV+IVDTSNEIGGDGD+PH GIG ARR+QVPN +MQH
Sbjct: 188 PGVGKTTVIREIARMLADDYRKRVMIVDTSNEIGGDGDIPHPGIGNARRLQVPNQDMQHK 247
Query: 286 VMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
V+IEAVENHMP+ I+IDEIGT+LEA+AASTIAQRG+QLV TAHG+TI+N++ NPSL +LV
Sbjct: 248 VLIEAVENHMPQAIVIDEIGTKLEAMAASTIAQRGIQLVATAHGITIENLIMNPSLDMLV 307
Query: 346 GGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGK 405
GG++SVTLGDEEA +R VQKT+LERKGP TFTCA E++S+ E RVH L+ TVDA+LAGK
Sbjct: 308 GGVQSVTLGDEEANRRGVQKTVLERKGPSTFTCAAEIVSKIELRVHRSLEDTVDALLAGK 367
Query: 406 LPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSA-EMESDEDSEDEDYASNQF 464
+P E+R++ ++ P++ Y ++ L + + A ++++D S + F
Sbjct: 368 MPNVEIRKVGSKG--PVQEV------YVQKERLDLGPSEGATQLDTDSLSNARRSLDSAF 419
Query: 465 K----NRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILAS 520
I RS + P + +Y Y I E+ LQ K + LED + +T +I ADA++A
Sbjct: 420 NLDPAEGHIGRST-EAEPDLNLYAYGISESTALQAIKQLELEDIVTLTYNISEADAVIAL 478
Query: 521 SSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIE 580
S++K+N I+ V K +PVF K+N++ Q+ +A+R ++ + G + D E
Sbjct: 479 QSKLKKNTQIQAVVKSQDIPVFFTKTNSLVQIRRALRALVDDHTDGLM------DFEDTE 532
Query: 581 IEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAA 640
+ EE DALEE RLAIE +VIP GE+V+LLPR I+A Q++LVES++L
Sbjct: 533 VRSS--------EETDALEEARLAIEQVVIPKGESVQLLPRPPSIIASQVDLVESFKLKW 584
Query: 641 ENSGTELNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSDAG-------TSF 693
E+ G E N L+ILP + + G S K+ LT SD
Sbjct: 585 ESIGQEPNACLRILPQFVGVEE---------GGKSVKQEAATELTDSDNSDDMDYKQNGV 635
Query: 694 TRLPFLPE 701
+RLPFLPE
Sbjct: 636 SRLPFLPE 643
>gi|125554146|gb|EAY99751.1| hypothetical protein OsI_21736 [Oryza sativa Indica Group]
Length = 582
Score = 580 bits (1494), Expect = e-162, Method: Compositional matrix adjust.
Identities = 315/610 (51%), Positives = 418/610 (68%), Gaps = 43/610 (7%)
Query: 104 FLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK 163
LELLP +RR + H EL L+EVVMDLGR PLARFPSGD+++S+ + +DL+HA S+
Sbjct: 4 LLELLPGELRRRVEGHPELPALVEVVMDLGRPPLARFPSGDFLLSQSPISFDDLRHATSQ 63
Query: 164 VGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVI 223
VGDF DNR+GI R+LHRISAIRNRK +IGLTCRVGRAV GSA ++ DLV+ GGS+L+I
Sbjct: 64 VGDFGADNRAGISRTLHRISAIRNRKGAIIGLTCRVGRAVPGSANLLQDLVKDGGSLLLI 123
Query: 224 GPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQ 283
GPPGVGKTT+IREIARMLADD+ KRV+IVDTSNEIGGDGD+PH GIG ARR+QVPN +MQ
Sbjct: 124 GPPGVGKTTVIREIARMLADDYRKRVMIVDTSNEIGGDGDIPHPGIGNARRLQVPNQDMQ 183
Query: 284 HSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQI 343
H V+IEAVENHMP+ I+IDEIGT+LEA+AASTIAQRG+QLV TAHG+TI+N++ NPSL +
Sbjct: 184 HKVLIEAVENHMPQAIVIDEIGTKLEAMAASTIAQRGIQLVATAHGITIENLIMNPSLDM 243
Query: 344 LVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILA 403
LVGG++SVTLGDEEA +R VQKT+LERKGP TFTCA E++S+ E RVH L+ TVDA+LA
Sbjct: 244 LVGGVQSVTLGDEEANRRGVQKTVLERKGPSTFTCAAEIVSKIELRVHRSLEDTVDALLA 303
Query: 404 GKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSA-EMESDEDSEDEDYASN 462
GK+P E+R++ ++ P++ Y ++ L + + A ++++D S +
Sbjct: 304 GKMPNVEIRKVGSKG--PVQEV------YVQKERLDLGPSEGATQLDTDSLSNARRSLDS 355
Query: 463 QFK----NRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAIL 518
F I RS + P + +Y Y I E+ LQ K + LED + +T +I ADA++
Sbjct: 356 AFNLDPAEGHIGRST-EAEPDLNLYAYGISESTALQAIKQLELEDIVTLTYNISEADAVI 414
Query: 519 ASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSD 578
A S++K+N I+ V K +PVF K+N++ Q+ +A+R ++ + G
Sbjct: 415 ALQSKLKKNTQIQAVVKSQDIPVFFTKTNSLVQIRRALRALVDDHTDGL----------- 463
Query: 579 IEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQL 638
++ ED R + EE DALEE RLAIE +VIP GE+V+LLPR I+A Q++LVES++L
Sbjct: 464 MDFEDTEEVR--SSEETDALEEARLAIEQVVIPKGESVQLLPRPPSIIASQVDLVESFKL 521
Query: 639 AAENSGTELNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSDAG-------T 691
E+ G E N L+ILP + + G S K+ LT SD
Sbjct: 522 KWESIGQEPNACLRILPQFVGVEE---------GGKSVKQEAATELTDSDNSDDMDYKQN 572
Query: 692 SFTRLPFLPE 701
+RLPFLPE
Sbjct: 573 GVSRLPFLPE 582
>gi|125596098|gb|EAZ35878.1| hypothetical protein OsJ_20178 [Oryza sativa Japonica Group]
Length = 581
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 314/610 (51%), Positives = 417/610 (68%), Gaps = 44/610 (7%)
Query: 104 FLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK 163
LELLP +RR + H EL L+EVVMDLGR PLARFPSGD+++S+ + +DL+HA S+
Sbjct: 4 LLELLPGELRRRVEGHPELPALVEVVMDLGRPPLARFPSGDFLLSQSPISFDDLRHATSQ 63
Query: 164 VGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVI 223
VGDF DNR+GI R+LHRISAIRNRK +IGLTCRVGRAV GSA ++ DLV+ GGS+L+I
Sbjct: 64 VGDFGADNRAGISRTLHRISAIRNRKGAIIGLTCRVGRAVPGSANLLQDLVKDGGSLLLI 123
Query: 224 GPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQ 283
GPPGVGKTT+IREIARMLADD+ KRV+IVDTSNEIGGDGD+PH GIG ARR+QVPN +MQ
Sbjct: 124 GPPGVGKTTVIREIARMLADDYRKRVMIVDTSNEIGGDGDIPHPGIGNARRLQVPNQDMQ 183
Query: 284 HSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQI 343
H V+IEAVENHMP+ I+IDEIGT+LEA+AASTIAQRG+QLV TAHG+TI+N++ NPSL +
Sbjct: 184 HKVLIEAVENHMPQAIVIDEIGTKLEAMAASTIAQRGIQLVATAHGITIENLIMNPSLDM 243
Query: 344 LVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILA 403
LVGG++SVTLGDEEA +R VQKT+LERKGP TFTCA E++S+ E RVH L+ TVDA+LA
Sbjct: 244 LVGGVQSVTLGDEEANRRGVQKTVLERKGPSTFTCAAEIVSKIELRVHRSLEDTVDALLA 303
Query: 404 GKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSA-EMESDEDSEDEDYASN 462
GK+P E+R++ ++ P++ Y ++ L + + A ++++D S +
Sbjct: 304 GKMPNVEIRKVGSKG--PVQEV------YVQKERLDLGPSEGATQLDTDSLSNARRSLDS 355
Query: 463 QFK----NRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAIL 518
F I RS + P + +Y Y I E+ LQ K + LED + +T +I ADA++
Sbjct: 356 AFNLDPAEGHIGRST-EAEPDLNLYAYGISESTALQAIKQLELEDIVTLTYNISEADAVI 414
Query: 519 ASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSD 578
A S++K+N I+ V K +PVF K+N++ Q+ +A+R ++ + G + D
Sbjct: 415 ALQSKLKKNTQIQAVVKSQDIPVFFTKTNSLVQIRRALRALVDDHTDGLM------DFED 468
Query: 579 IEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQL 638
E+ + EE DALEE RLAIE +VIP GE+V+LLPR I+A Q++LVES++L
Sbjct: 469 TEVR--------SSEETDALEEARLAIEQVVIPKGESVQLLPRPPSIIASQVDLVESFKL 520
Query: 639 AAENSGTELNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSDAG-------T 691
E+ G E N L+ILP + + G S K+ LT SD
Sbjct: 521 KWESIGQEPNACLRILPQFVGVEE---------GGKSVKQEAATELTDSDNSDDMDYKQN 571
Query: 692 SFTRLPFLPE 701
+RLPFLPE
Sbjct: 572 GVSRLPFLPE 581
>gi|326488989|dbj|BAJ98106.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 650
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 305/597 (51%), Positives = 413/597 (69%), Gaps = 31/597 (5%)
Query: 109 PSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS 168
P +RR + H EL L+EVVMDLGR PLARFPSGD+++S + + +DL A +KVGDF
Sbjct: 81 PGELRRSVEDHPELPALVEVVMDLGRPPLARFPSGDFLLSHRPISFDDLHQATAKVGDFG 140
Query: 169 DDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGV 228
DNR+GI R+LHRISAIRNR+ ++GLTCRVGRAVAGSA ++ DLV+ GGS+L+IGPPGV
Sbjct: 141 GDNRAGISRTLHRISAIRNRQGDIVGLTCRVGRAVAGSANLLQDLVKAGGSLLLIGPPGV 200
Query: 229 GKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMI 288
GKTT+IREIARMLADD+ KRV+IVDTSNEI GDGD+PH GIG ARR+QVPN MQH V+I
Sbjct: 201 GKTTVIREIARMLADDYDKRVMIVDTSNEIAGDGDIPHPGIGNARRLQVPNQEMQHKVLI 260
Query: 289 EAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348
EAVENHMP+ I+IDEIGT+LEA+AASTIAQRG+QLV +AHG+TI+N+ NPSL +LVGGI
Sbjct: 261 EAVENHMPQAIVIDEIGTKLEAMAASTIAQRGIQLVASAHGVTIENLTMNPSLDMLVGGI 320
Query: 349 ESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPL 408
+SVTLGDEEA +R+VQKT+LERKGP TF AVE++S+TE RVH L+ATVDA+LAG++P
Sbjct: 321 QSVTLGDEEASRRRVQKTVLERKGPSTFAYAVEIVSKTELRVHRSLEATVDALLAGRMPN 380
Query: 409 FEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDE----DYASNQF 464
E+R++ + +V+ + + + + +++ + A + + S D D A+
Sbjct: 381 VEIRKLGSTGSVQQEVS-VQKDQFRRDPYKIVSQFEVASLSNARTSLDSAFNLDSANGHI 439
Query: 465 KNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEM 524
+N ++ + +Y Y I E LQ K + LED I +T +I ADA++A S++
Sbjct: 440 ENSNVSEA------GFNLYVYGISEEIALQAIKQLELEDMITLTYNISEADAVIALQSKL 493
Query: 525 KQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDD 584
K+N I+ + K +PVF K+N++ Q+ +A+R+++ G I++ED
Sbjct: 494 KKNSQIQALLKSEDIPVFFAKTNSLVQITRALRVLVDDHVDGL-----------IDVEDK 542
Query: 585 APKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSG 644
R EE DALEE RLA+E +VIP GE+V+LLPR S I++ Q+ LV+S+ L E +G
Sbjct: 543 VEVRSS--EETDALEEARLAVEQVVIPKGESVQLLPRPSTIISYQVNLVKSFNLKWEVTG 600
Query: 645 TELNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSDAGTSFTRLPFLPE 701
E N L+ILP ++ + + S S T+P LT SD + TRLPFLPE
Sbjct: 601 QEPNACLRILPQFADREQVAASEQETS-ETAP------GLTDSDGSSGLTRLPFLPE 650
>gi|449456721|ref|XP_004146097.1| PREDICTED: uncharacterized protein ycf45-like [Cucumis sativus]
Length = 644
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 311/616 (50%), Positives = 419/616 (68%), Gaps = 36/616 (5%)
Query: 98 DIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDL 157
D EL+ L LLP MRR + H E LIEVV+DLGRKPLARFP+GD+++S+ +V +DL
Sbjct: 53 DDELDRLLVLLPEEMRRRIREHEECHQLIEVVLDLGRKPLARFPTGDFLLSDSLVTVDDL 112
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+HA SKVGDF+ DNR+GI R+LHRISAIRNRK +IGLTCRVGRA++GSA ++ DL++ G
Sbjct: 113 RHATSKVGDFAIDNRAGISRTLHRISAIRNRKGVIIGLTCRVGRAISGSAILLRDLIQDG 172
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
S+L+IGPPGVGKTT+IREIAR+LA+D KRV+IVDTSNEIGGDGD+PH+GIG ARRMQV
Sbjct: 173 ASLLLIGPPGVGKTTIIREIARILANDFKKRVMIVDTSNEIGGDGDIPHAGIGNARRMQV 232
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
P+ +MQH V+IEAVENHMP+ IIIDEI T+LEA+AASTIAQRG+QLV TAHG+TI+N++
Sbjct: 233 PDSDMQHKVLIEAVENHMPQVIIIDEISTKLEAMAASTIAQRGIQLVATAHGVTIENLIM 292
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NP L++LVGGI+SVTLGDEEA +R+VQKT+LERKGP TF C VE+IS+TE RVH LDAT
Sbjct: 293 NPLLEMLVGGIQSVTLGDEEASRRRVQKTVLERKGPSTFACGVEIISKTELRVHRSLDAT 352
Query: 398 VDAILAGKLPLFEVRQMDA-EHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSED 456
VDA+L G+ P EVR++++ E E ++ S S + N+D + SD E
Sbjct: 353 VDAVLCGRYPNVEVRKINSTEEKETMQ-------SDISISTIAQNKDDAPVSVSDTYYEQ 405
Query: 457 EDYASNQFKNRSIKRSVRKPSP-----PVCVYTYRILEADLLQVAKVMGLED-EIDVTDD 510
A ++ + + P+ ++ Y +LEA ++Q K + + D I TD+
Sbjct: 406 SGQAPSEMSFEVLPTAGESSEEDEGKFPLYLFVYGVLEASVIQGFKQLRMNDVAIHFTDN 465
Query: 511 IGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVR-MILGMESFGTIS 569
I ADA+ A ++K+N I+ AK H +P++V+K+ ++ + +A+R +I+ E G
Sbjct: 466 ISEADALFALQPKLKKNAGIQAAAKSHDIPIYVVKTGSLVHITRALRALIIDQEDEG--- 522
Query: 570 KLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQ 629
D E + R + E+IDALEE R+AIE IVIP E+VELLPR I++ Q
Sbjct: 523 -------EDFE----SLGRMRSSEKIDALEEARMAIEQIVIPREESVELLPRPPHILSLQ 571
Query: 630 LELVESYQLAAENSGTELNPRLQILPLRLNKNKKSFSNSSNSGSTSP----KETLGKSLT 685
++L+ Y L +E G E N RL+ILPL N + N+ G P + +G +
Sbjct: 572 MDLIRKYHLQSERIGMETNVRLRILPLIANNVDE---NAKTQGKVDPTTEFDDFIGSNGD 628
Query: 686 SSDAGTSFTRLPFLPE 701
++ S RLP LPE
Sbjct: 629 TNGTLYSVDRLPLLPE 644
>gi|449523614|ref|XP_004168818.1| PREDICTED: uncharacterized protein ycf45-like, partial [Cucumis
sativus]
Length = 640
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 311/616 (50%), Positives = 419/616 (68%), Gaps = 36/616 (5%)
Query: 98 DIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDL 157
D EL+ L LLP MRR + H E LIEVV+DLGRKPLARFP+GD+++S+ +V +DL
Sbjct: 49 DDELDRLLVLLPEEMRRRIREHEECHQLIEVVLDLGRKPLARFPTGDFLLSDSLVTVDDL 108
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+HA SKVGDF+ DNR+GI R+LHRISAIRNRK +IGLTCRVGRA++GSA ++ DL++ G
Sbjct: 109 RHATSKVGDFAIDNRAGISRTLHRISAIRNRKGVIIGLTCRVGRAISGSAILLRDLIQDG 168
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
S+L+IGPPGVGKTT+IREIAR+LA+D KRV+IVDTSNEIGGDGD+PH+GIG ARRMQV
Sbjct: 169 ASLLLIGPPGVGKTTIIREIARILANDFKKRVMIVDTSNEIGGDGDIPHAGIGNARRMQV 228
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
P+ +MQH V+IEAVENHMP+ IIIDEI T+LEA+AASTIAQRG+QLV TAHG+TI+N++
Sbjct: 229 PDSDMQHKVLIEAVENHMPQVIIIDEISTKLEAMAASTIAQRGIQLVATAHGVTIENLIM 288
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NP L++LVGGI+SVTLGDEEA +R+VQKT+LERKGP TF C VE+IS+TE RVH LDAT
Sbjct: 289 NPLLEMLVGGIQSVTLGDEEASRRRVQKTVLERKGPSTFACGVEIISKTELRVHRSLDAT 348
Query: 398 VDAILAGKLPLFEVRQMDA-EHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSED 456
VDA+L G+ P EVR++++ E E ++ S S + N+D + SD E
Sbjct: 349 VDAVLCGRYPNVEVRKINSTEEKETMQ-------SDISISTIAQNKDDAPVSVSDTYYEQ 401
Query: 457 EDYASNQFKNRSIKRSVRKPSP-----PVCVYTYRILEADLLQVAKVMGLED-EIDVTDD 510
A ++ + + P+ ++ Y +LEA ++Q K + + D I TD+
Sbjct: 402 SGQAPSEMSFEVLPTAGESSEEDEGKFPLYLFVYGVLEASVIQGFKQLRMNDVAIHFTDN 461
Query: 511 IGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVR-MILGMESFGTIS 569
I ADA+ A ++K+N I+ AK H +P++V+K+ ++ + +A+R +I+ E G
Sbjct: 462 ISEADALFALQPKLKKNAGIQAAAKSHDIPIYVVKTGSLVHITRALRALIIDQEDEG--- 518
Query: 570 KLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQ 629
D E + R + E+IDALEE R+AIE IVIP E+VELLPR I++ Q
Sbjct: 519 -------EDFE----SLGRMRSSEKIDALEEARMAIEQIVIPREESVELLPRPPHILSLQ 567
Query: 630 LELVESYQLAAENSGTELNPRLQILPLRLNKNKKSFSNSSNSGSTSP----KETLGKSLT 685
++L+ Y L +E G E N RL+ILPL N + N+ G P + +G +
Sbjct: 568 MDLIRKYHLQSERIGMETNVRLRILPLIANNVDE---NAKTQGKVDPTTEFDDFIGSNGD 624
Query: 686 SSDAGTSFTRLPFLPE 701
++ S RLP LPE
Sbjct: 625 TNGTLYSVDRLPLLPE 640
>gi|242092028|ref|XP_002436504.1| hypothetical protein SORBIDRAFT_10g003860 [Sorghum bicolor]
gi|241914727|gb|EER87871.1| hypothetical protein SORBIDRAFT_10g003860 [Sorghum bicolor]
Length = 657
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 306/596 (51%), Positives = 406/596 (68%), Gaps = 47/596 (7%)
Query: 119 HRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRS 178
H EL L+EVVMDLGR PLARFPSGD+++S + + +DL+HA S+VGDF DNR+GI R+
Sbjct: 96 HPELPALVEVVMDLGRPPLARFPSGDFLLSHRPISFDDLRHATSQVGDFGADNRAGISRT 155
Query: 179 LHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
LHRISAIRNRK ++GLTCRVGRAV GSA ++ DLV+ GGS+L+IGPPGVGKTT+IREIA
Sbjct: 156 LHRISAIRNRKGVIVGLTCRVGRAVPGSANLLQDLVKDGGSLLLIGPPGVGKTTVIREIA 215
Query: 239 RMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPET 298
RMLADD+ KRV+IVDTSNEIGGDGD+PH GIG ARR+QVPN +MQH V+IEAVENHMP+
Sbjct: 216 RMLADDYKKRVMIVDTSNEIGGDGDIPHPGIGNARRLQVPNQDMQHKVLIEAVENHMPQA 275
Query: 299 IIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358
I+IDEIGT+LEA+AASTIAQRG+QLV TAHG+TI+N++ NPSL++LVGGI+SVTLGDEEA
Sbjct: 276 IVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNPSLEMLVGGIQSVTLGDEEA 335
Query: 359 KKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEH 418
+R VQKT+LERKGP TFTCA E++S+ E RVH L+ATVDA+LAGKLP E+R++
Sbjct: 336 NRRGVQKTVLERKGPSTFTCAAEIVSKKELRVHRSLEATVDALLAGKLPNVEIRKL---- 391
Query: 419 HEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASN-------QFKNRSIKR 471
GS E+++ +++S SD D D N F S +
Sbjct: 392 -----------GSKGLMQEVSVQKERSHLGISDATEFDRDSLRNARRSLDSAFNLDSAEG 440
Query: 472 SVRKP---SPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNP 528
+ + + +Y Y I E+ LQ + + LED + +T +I ADA++A S++K+N
Sbjct: 441 HIERTDGDGSSLNLYAYGISESTALQAIQQLELEDIVTLTYNISEADAVIALHSKLKKNS 500
Query: 529 WIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKR 588
I+ + K +PVF +K+N+++Q+ +A+R ++ + I+ +D R
Sbjct: 501 QIQALVKSQDIPVFFVKTNSLSQITRALRALVD-----------DHMDELIDYDDKEEAR 549
Query: 589 KPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELN 648
P EE DALEE RLAIE +VIP GE+V+LLPR S I++ Q++LVES+ L E G E +
Sbjct: 550 SP--EETDALEEARLAIEQVVIPKGESVQLLPRPSSIISSQVDLVESFSLQWEVIGQEPH 607
Query: 649 PRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSD---AGTSFTRLPFLPE 701
+ ILP K ++ +P L S +S D A TRLPFLP+
Sbjct: 608 AYVTILPHFAPKEAEAIQKE------TPAAGLADSESSDDLDHAQNGITRLPFLPD 657
>gi|22330595|ref|NP_177460.2| P-loop containing nucleoside triphosphate hydrolase [Arabidopsis
thaliana]
gi|332197301|gb|AEE35422.1| P-loop containing nucleoside triphosphate hydrolase [Arabidopsis
thaliana]
Length = 666
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 310/642 (48%), Positives = 425/642 (66%), Gaps = 55/642 (8%)
Query: 82 SVSDSPNSAST----SRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPL 137
++S SP+S + D EL L L+P +R+ L H E+ +LIE+V+DLGRKPL
Sbjct: 58 AISASPSSVAVPELEDEDHFDDELRRLLALVPEEIRQTLKEHPEISELIEIVLDLGRKPL 117
Query: 138 ARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTC 197
ARFPSGD+VIS+ V+ +DL+ A+S+VG+F++DNR+GI R+LHRISAIRNRK ++IGLTC
Sbjct: 118 ARFPSGDFVISDDAVRVKDLEFAVSQVGEFTNDNRAGISRTLHRISAIRNRKGEIIGLTC 177
Query: 198 RVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE 257
RVGR+V GSA ++ DLV+ G S+L+IGPPGVGKTT+IRE+ARML +D+ KRV+IVDTSNE
Sbjct: 178 RVGRSVRGSANLLRDLVQDGNSLLLIGPPGVGKTTMIREVARMLGNDYEKRVMIVDTSNE 237
Query: 258 IGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIA 317
IGGDGD+PH GIG ARRMQVPN ++QH V+IEAVENHMP+ I+IDEIGT+LEA+AASTIA
Sbjct: 238 IGGDGDIPHPGIGNARRMQVPNSDIQHKVLIEAVENHMPQVIVIDEIGTKLEAIAASTIA 297
Query: 318 QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFT 377
+RG+QLV TAHG TI+N++KNPSL +LVGG++SVTLGDEEA +R QKT+LERKGP TF
Sbjct: 298 ERGIQLVATAHGATIENLIKNPSLDLLVGGVQSVTLGDEEATRRGGQKTVLERKGPSTFN 357
Query: 378 CAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAE------HHEPLKVTPILRGS 431
C E++S+TE RVH L+ATVDAILAG+LP E+R++ + EP +
Sbjct: 358 CGAEIVSKTEVRVHRSLEATVDAILAGRLPNVEIRKIKSHGVEVIMEKEPFIDEKTVDKK 417
Query: 432 YPEE----SELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRI 487
+ EE S+LT E S +++ E +E E + + +Y Y I
Sbjct: 418 HEEETLDVSKLTKEETVSEVLQTKEITEAESSEKDTL---------------MYLYVYGI 462
Query: 488 LEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSN 547
E+ +LQ K + +E +++TDDI A+A+LA +++++NP I+ A H +PV+V K+N
Sbjct: 463 AESTVLQAIKQLEMETAVELTDDISEAEALLALQAKIRKNPRIKSFATSHGIPVYVTKTN 522
Query: 548 TMAQMVKAVRMIL-----GMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVR 602
+ Q+ KA+R +L G+ FG+ ED R E++DALEE R
Sbjct: 523 SGIQVAKAIRALLTDYEDGLGEFGS--------------ED----RLKLSEKMDALEEAR 564
Query: 603 LAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRLNKNK 662
LAIE IVIP E +LLPR IV+ Q +LV Y L +E L+ILP +++
Sbjct: 565 LAIERIVIPKKETTDLLPRPPRIVSLQGKLVRKYNLRSERKWRGDEMYLRILPYSTEEDR 624
Query: 663 KSFSNSSNSGSTSPKET--LGKSL-TSSDAGTSFTRLPFLPE 701
+ G + +E LG + S+D+ + RLP LP+
Sbjct: 625 DDREDEGEFGEANGEELDELGFATGESNDSPSGIDRLPLLPD 666
>gi|18086459|gb|AAL57683.1| At1g73170/T18K17_17 [Arabidopsis thaliana]
Length = 666
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 310/642 (48%), Positives = 424/642 (66%), Gaps = 55/642 (8%)
Query: 82 SVSDSPNSAST----SRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPL 137
++S SP+S + D EL L L+P +R+ L H E+ +LIE+V+DLGRKPL
Sbjct: 58 AISASPSSVAVPELEDEDHFDDELRRLLALVPEEIRQTLKEHPEISELIEIVLDLGRKPL 117
Query: 138 ARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTC 197
ARFPSGD+VIS+ V+ +DL+ A+S+VG+F++DNR+GI R+LHRISAIRNRK ++IGLTC
Sbjct: 118 ARFPSGDFVISDDAVRVKDLEFAVSQVGEFTNDNRAGISRTLHRISAIRNRKGEIIGLTC 177
Query: 198 RVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE 257
RVGR+V GSA ++ DLV+ G S+L+IGPPGVGKTT+IRE+ARML +D+ KRV+IVDTSNE
Sbjct: 178 RVGRSVRGSANLLRDLVQDGNSLLLIGPPGVGKTTMIREVARMLGNDYEKRVMIVDTSNE 237
Query: 258 IGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIA 317
IGGDGD+PH GIG ARRMQVPN + QH V+IEAVENHMP+ I+IDEIGT+LEA+AASTIA
Sbjct: 238 IGGDGDIPHPGIGNARRMQVPNSDTQHKVLIEAVENHMPQVIVIDEIGTKLEAIAASTIA 297
Query: 318 QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFT 377
+RG+QLV TAHG TI+N++KNPSL +LVGG++SVTLGDEEA +R QKT+LERKGP TF
Sbjct: 298 ERGIQLVATAHGATIENLIKNPSLDLLVGGVQSVTLGDEEATRRGGQKTVLERKGPSTFN 357
Query: 378 CAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAE------HHEPLKVTPILRGS 431
C E++S+TE RVH L+ATVDAILAG+LP E+R++ + EP +
Sbjct: 358 CGAEIVSKTEVRVHRSLEATVDAILAGRLPNVEIRKIKSHGVEVIMEKEPFIDEKTVDKK 417
Query: 432 YPEE----SELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRI 487
+ EE S+LT E S +++ E +E E + + +Y Y I
Sbjct: 418 HEEETLDVSKLTKEETVSEVLQTKEITEAESSEKDTL---------------MYLYVYGI 462
Query: 488 LEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSN 547
E+ +LQ K + +E +++TDDI A+A+LA +++++NP I+ A H +PV+V K+N
Sbjct: 463 AESTVLQAIKQLEMETAVELTDDISEAEALLALQAKIRKNPRIKSFATSHGIPVYVTKTN 522
Query: 548 TMAQMVKAVRMIL-----GMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVR 602
+ Q+ KA+R +L G+ FG+ ED R E++DALEE R
Sbjct: 523 SGIQVAKAIRALLTDYEDGLGEFGS--------------ED----RLKLSEKMDALEEAR 564
Query: 603 LAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRLNKNK 662
LAIE IVIP E +LLPR IV+ Q +LV Y L +E L+ILP +++
Sbjct: 565 LAIERIVIPKKETTDLLPRPPRIVSLQGKLVRKYNLRSERKWRGDEMYLRILPYSTEEDR 624
Query: 663 KSFSNSSNSGSTSPKET--LGKSL-TSSDAGTSFTRLPFLPE 701
+ G + +E LG + S+D+ + RLP LP+
Sbjct: 625 DDREDEGEFGEANGEELDELGFATGESNDSPSGIDRLPLLPD 666
>gi|226498156|ref|NP_001142150.1| uncharacterized protein LOC100274315 [Zea mays]
gi|223947319|gb|ACN27743.1| unknown [Zea mays]
gi|413942919|gb|AFW75568.1| hypothetical protein ZEAMMB73_728588 [Zea mays]
Length = 661
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 304/594 (51%), Positives = 413/594 (69%), Gaps = 30/594 (5%)
Query: 114 RELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAIS--KVGDFSDDN 171
R + H EL L+EVVMDLGR PLARFPSGD+++S++ + +DL+HA S +VGDF DN
Sbjct: 92 RRVETHPELPALVEVVMDLGRPPLARFPSGDFLLSQRPISFDDLRHATSHSQVGDFGADN 151
Query: 172 RSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKT 231
R+GI R+LHRISAIRNRK ++GLTCRVGRAV GSA ++ DLV+ GGS+L+IGPPGVGKT
Sbjct: 152 RAGISRTLHRISAIRNRKGVIVGLTCRVGRAVPGSANLLQDLVKDGGSLLLIGPPGVGKT 211
Query: 232 TLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAV 291
T+IREIARMLADD+ KRV+IVDTSNEIGGDGD+PH GIG ARR+QVPN +MQH V+IEAV
Sbjct: 212 TVIREIARMLADDYKKRVMIVDTSNEIGGDGDIPHPGIGNARRLQVPNQDMQHKVLIEAV 271
Query: 292 ENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESV 351
ENHMP+ I+IDEIGT+LEA+AASTIAQRG+QLV TAHG+TI+N++ NPSL++LVGGI+SV
Sbjct: 272 ENHMPQAIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNPSLEMLVGGIQSV 331
Query: 352 TLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEV 411
TLGDEEA +R VQKT+LERKGP TFTCA E++S+ E RVH L+ATVDA+LAGKLP FE+
Sbjct: 332 TLGDEEANRRGVQKTVLERKGPSTFTCAAEIVSKKELRVHRSLEATVDALLAGKLPNFEI 391
Query: 412 RQMDAEHHEPLKVTPILRGSYPEESELTI---NEDKSAEMESDEDSEDEDYASNQFKNRS 468
R++ ++ ++ + + E+S L I E S + + S D ++ + +
Sbjct: 392 RKLGSKGS--MQEVSVQK----EQSHLGIYDATEFGSDSLRNARRSLDSAFSLDSAEGHI 445
Query: 469 IKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNP 528
++ S +Y Y I E+ LQ + L+D + +T +I ADA++A S++K+N
Sbjct: 446 VRSDGADSS--FNLYAYGISESTALQAIHQLELDDSVTLTYNISEADAVIALHSKLKKNY 503
Query: 529 WIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKR 588
I+ V K +PVF++K+N++ Q+ +A+R ++ + I+ D R
Sbjct: 504 QIQAVLKSQDIPVFLVKTNSLPQITRALRALVD-----------DHMDEVIDYNDKEEAR 552
Query: 589 KPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELN 648
+ EE DALEE RLAIE +VIP GE+V+LLPR S I++ Q+ LVES+ L E G E
Sbjct: 553 --SSEETDALEEARLAIEQVVIPKGESVQLLPRPSSIISSQVGLVESFSLKWEVVGQEPK 610
Query: 649 PRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSDAGTS-FTRLPFLPE 701
++ILP K ++ + + + P ++ +S SD S TRLPFLP+
Sbjct: 611 ACVRILPHFAPKQVEAVARETPA---EPADSDWESHDDSDHTQSGITRLPFLPD 661
>gi|357125252|ref|XP_003564309.1| PREDICTED: uncharacterized protein ycf45-like [Brachypodium
distachyon]
Length = 650
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 303/597 (50%), Positives = 404/597 (67%), Gaps = 43/597 (7%)
Query: 114 RELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRS 173
R + H EL L+EVVMDLGR PLARFPSGD+++S + + ++L HA +KVGDF DNR+
Sbjct: 88 RRVEGHPELPALVEVVMDLGRPPLARFPSGDFLLSHRPISFDELHHATAKVGDFGGDNRA 147
Query: 174 GIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTL 233
GI R+LHRISAIRNRK ++GLTCRVGRAV GSA ++ DLV+ GGS+L+IGPPGVGKTT+
Sbjct: 148 GISRTLHRISAIRNRKGDIVGLTCRVGRAVPGSAILLQDLVKDGGSLLLIGPPGVGKTTV 207
Query: 234 IREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293
IREIARMLADD+ KRV+IVDTSNEIGGDGD+PH GIG ARR+QVPN MQH V+IEAVEN
Sbjct: 208 IREIARMLADDYKKRVMIVDTSNEIGGDGDIPHPGIGNARRLQVPNQEMQHKVLIEAVEN 267
Query: 294 HMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTL 353
HMP+ I+IDEIGT+LEA+AASTIAQRG+QLV +AHG+TI+N+ NPSL++LVGGI+SVTL
Sbjct: 268 HMPQAIVIDEIGTKLEAMAASTIAQRGIQLVASAHGVTIENLTMNPSLEMLVGGIQSVTL 327
Query: 354 GDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQ 413
GDEEA +R+VQKT+LERKGP TFT AVE++S+TE RVH L+ATVDA+LAG+LP E+R+
Sbjct: 328 GDEEANRRRVQKTVLERKGPSTFTYAVEIVSKTELRVHRSLEATVDALLAGRLPNVEIRK 387
Query: 414 ----MDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSI 469
M + ++ RGS+ E E+D S + F S
Sbjct: 388 LGSNMSVQKEVSVQKEQFHRGSF----------QIGPEFEADSLSNARTSLDSAFHLDSA 437
Query: 470 KRSVRK---PSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQ 526
+ + K +Y Y I E LQ K + LED + +T +I ADA++A S++K+
Sbjct: 438 EGHIEKFNESEEGFNLYAYGISEETALQAIKQLELEDMVTLTYNISEADAVIALQSKLKK 497
Query: 527 NPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILG--MESFGTISKLPNKSTSDIEIEDD 584
N I+ K +PVF +K+N++ Q+ +A+R+++ M+ ++ ED
Sbjct: 498 NSQIQAAVKSQDIPVFFVKTNSLVQITRALRVLVDDLMDEL-------------MDFEDK 544
Query: 585 APKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSG 644
R + EE DALEE RLA+E +VIP GE+ +LLPR I++ Q LVES++L E G
Sbjct: 545 EEVR--SSEEADALEEARLAVEQVVIPKGESAQLLPRPRSIISSQANLVESFKLRWEVIG 602
Query: 645 TELNPRLQILPLRLNKNKKSFSNSSNSGSTSPKETLGKSLTSSDAGTSFTRLPFLPE 701
E N L+ILP + + + + ++S S+ + +G+ A TRLPFLPE
Sbjct: 603 QEPNVCLKILPQFTDTEEGTSTKLTDSSSS---DGMGR------AEDVVTRLPFLPE 650
>gi|12324328|gb|AAG52137.1|AC010556_19 putative ATPase; 52924-55985 [Arabidopsis thaliana]
Length = 652
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 307/637 (48%), Positives = 423/637 (66%), Gaps = 59/637 (9%)
Query: 82 SVSDSPNSAST----SRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPL 137
++S SP+S + D EL L L+P +R+ L H E+ +LIE+V+DLGRKPL
Sbjct: 58 AISASPSSVAVPELEDEDHFDDELRRLLALVPEEIRQTLKEHPEISELIEIVLDLGRKPL 117
Query: 138 ARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTC 197
ARFPSGD+VIS+ V+ +DL+ A+S+VG+F++DNR+GI R+LHRISAIRNRK ++IGLTC
Sbjct: 118 ARFPSGDFVISDDAVRVKDLEFAVSQVGEFTNDNRAGISRTLHRISAIRNRKGEIIGLTC 177
Query: 198 RVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE 257
RVGR+V GSA ++ DLV+ G S+L+IGPPGVGKTT+IRE+ARML +D+ KRV+IVDTSNE
Sbjct: 178 RVGRSVRGSANLLRDLVQDGNSLLLIGPPGVGKTTMIREVARMLGNDYEKRVMIVDTSNE 237
Query: 258 IGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIA 317
IGGDGD+PH GIG ARRMQVPN ++QH V+IEAVENHMP+ I+IDEIGT+LEA+AASTIA
Sbjct: 238 IGGDGDIPHPGIGNARRMQVPNSDIQHKVLIEAVENHMPQVIVIDEIGTKLEAIAASTIA 297
Query: 318 QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFT 377
+RG+QLV TAHG TI+N++KNPSL +LVGG++SVTLGDEEA +R QKT+LERKGP TF
Sbjct: 298 ERGIQLVATAHGATIENLIKNPSLDLLVGGVQSVTLGDEEATRRGGQKTVLERKGPSTFN 357
Query: 378 CAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESE 437
C E++S+TE RVH L+ATVDAILAG+LP E+R++ + E + E E
Sbjct: 358 CGAEIVSKTEVRVHRSLEATVDAILAGRLPNVEIRKIKSHGVEVIM-----------EKE 406
Query: 438 LTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEA-----DL 492
I+E K+ + + +E++ D + + ++ + + T I EA D
Sbjct: 407 PFIDE-KTVDKKHEEETLD------------VSKLTKEETVSEVLQTKEITEAESSEKDT 453
Query: 493 LQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQM 552
L V G+E +++TDDI A+A+LA +++++NP I+ A H +PV+V K+N+ Q+
Sbjct: 454 LMYLYVYGMETAVELTDDISEAEALLALQAKIRKNPRIKSFATSHGIPVYVTKTNSGIQV 513
Query: 553 VKAVRMIL-----GMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEY 607
KA+R +L G+ FG+ ED R E++DALEE RLAIE
Sbjct: 514 AKAIRALLTDYEDGLGEFGS--------------ED----RLKLSEKMDALEEARLAIER 555
Query: 608 IVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRLNKNKKSFSN 667
IVIP E +LLPR IV+ Q +LV Y L +E L+ILP +++ +
Sbjct: 556 IVIPKKETTDLLPRPPRIVSLQGKLVRKYNLRSERKWRGDEMYLRILPYSTEEDRDDRED 615
Query: 668 SSNSGSTSPKET--LGKSL-TSSDAGTSFTRLPFLPE 701
G + +E LG + S+D+ + RLP LP+
Sbjct: 616 EGEFGEANGEELDELGFATGESNDSPSGIDRLPLLPD 652
>gi|297842057|ref|XP_002888910.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297334751|gb|EFH65169.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 661
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/580 (50%), Positives = 395/580 (68%), Gaps = 30/580 (5%)
Query: 82 SVSDSPNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFP 141
S S SP D EL L L+P +RR L H E+ +LIE+V+DLGRKPLARFP
Sbjct: 57 SASSSPVPELEDEDHFDDELRRLLALVPEEIRRTLEKHPEISELIEIVLDLGRKPLARFP 116
Query: 142 SGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGR 201
SGD VIS++ V +DL+ A+S+VG+F++DNR+GI R+LHRISAIRNRK ++IGLTCRVGR
Sbjct: 117 SGDSVISDEAVSVKDLEFAVSQVGEFTNDNRAGISRTLHRISAIRNRKGEIIGLTCRVGR 176
Query: 202 AVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGD 261
+V GSA ++ DLV+ G S+L+IGPPGVGKTT+IRE+ARML +D+ KRV+IVDTSNEIGGD
Sbjct: 177 SVRGSANLLRDLVQDGNSLLLIGPPGVGKTTMIREVARMLGNDYEKRVMIVDTSNEIGGD 236
Query: 262 GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGV 321
GD+PH GIG ARRMQVPN ++QH V+IEAVENHMP+ I+IDEIGT+LEA+AASTIA+RG+
Sbjct: 237 GDIPHPGIGNARRMQVPNSDIQHKVLIEAVENHMPQVIVIDEIGTKLEAIAASTIAERGI 296
Query: 322 QLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVE 381
QLV TAHG TI+N++KNPSL +LVGG++SVTLGDEEA +R QKT+LERKGPPTF C E
Sbjct: 297 QLVATAHGATIENLIKNPSLDLLVGGVQSVTLGDEEATRRGGQKTVLERKGPPTFNCGAE 356
Query: 382 MISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTIN 441
++S+TE RVH L+ATVDA+LAG+LP E+R++ + E ++ P E T++
Sbjct: 357 IVSKTEVRVHRSLEATVDAVLAGRLPNVEIRKIKSHGVE------VIVEKEPFIDETTVD 410
Query: 442 EDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVC-VYTYRILEADLLQVAKVMG 500
+ E E+ S + I + + +Y Y I E+ +LQ K +
Sbjct: 411 KKHEEETLDVSKLAKEEIISEVIPTKEITEAESSEQETLMYLYIYGIAESTVLQAIKQLE 470
Query: 501 LEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMIL 560
+E +++TDDI A+A+LA +++++NP I+ +A H +PV+V K+N+ Q+ KA+R +L
Sbjct: 471 METAVELTDDISEAEALLALQAKIRKNPRIKSLATSHGIPVYVTKTNSGIQVAKAIRALL 530
Query: 561 G-----MESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEA 615
+ FG+ ED R E++DALEE RLAIE +V+P E
Sbjct: 531 TDYEDRLGEFGS--------------ED----RLKLSEKMDALEEARLAIERVVVPKKET 572
Query: 616 VELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
+LLPR IV+ Q +LV Y L +E L+ILP
Sbjct: 573 ADLLPRPPRIVSLQGKLVRKYNLRSERKWRGDEMYLRILP 612
>gi|194707358|gb|ACF87763.1| unknown [Zea mays]
Length = 554
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/578 (51%), Positives = 403/578 (69%), Gaps = 30/578 (5%)
Query: 130 MDLGRKPLARFPSGDWVISEQIVKHEDLKHAIS--KVGDFSDDNRSGIDRSLHRISAIRN 187
MDLGR PLARFPSGD+++S++ + +DL+HA S +VGDF DNR+GI R+LHRISAIRN
Sbjct: 1 MDLGRPPLARFPSGDFLLSQRPISFDDLRHATSHSQVGDFGADNRAGISRTLHRISAIRN 60
Query: 188 RKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247
RK ++GLTCRVGRAV GSA ++ DLV+ GGS+L+IGPPGVGKTT+IREIARMLADD+ K
Sbjct: 61 RKGVIVGLTCRVGRAVPGSANLLQDLVKDGGSLLLIGPPGVGKTTVIREIARMLADDYKK 120
Query: 248 RVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307
RV+IVDTSNEIGGDGD+PH GIG ARR+QVPN +MQH V+IEAVENHMP+ I+IDEIGT+
Sbjct: 121 RVMIVDTSNEIGGDGDIPHPGIGNARRLQVPNQDMQHKVLIEAVENHMPQAIVIDEIGTK 180
Query: 308 LEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTI 367
LEA+AASTIAQRG+QLV TAHG+TI+N++ NPSL++LVGGI+SVTLGDEEA +R VQKT+
Sbjct: 181 LEAMAASTIAQRGIQLVATAHGVTIENLIMNPSLEMLVGGIQSVTLGDEEANRRGVQKTV 240
Query: 368 LERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKVTPI 427
LERKGP TFTCA E++S+ E RVH L+ATVDA+LAGKLP FE+R++ ++ ++ +
Sbjct: 241 LERKGPSTFTCAAEIVSKKELRVHRSLEATVDALLAGKLPNFEIRKLGSKG--SMQEVSV 298
Query: 428 LRGSYPEESELTI---NEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYT 484
+ E+S L I E S + + S D ++ + + ++ S +Y
Sbjct: 299 QK----EQSHLGIYDATEFGSDSLRNARRSLDSAFSLDSAEGHIVRSDGADSS--FNLYA 352
Query: 485 YRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVI 544
Y I E+ LQ + L+D + +T +I ADA++A S++K+N I+ V K +PVF++
Sbjct: 353 YGISESTALQAIHQLELDDSVTLTYNISEADAVIALHSKLKKNYQIQAVLKSQDIPVFLV 412
Query: 545 KSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLA 604
K+N++ Q+ +A+R ++ + I+ D R + EE DALEE RLA
Sbjct: 413 KTNSLPQITRALRALVD-----------DHMDEVIDYNDKEEAR--SSEETDALEEARLA 459
Query: 605 IEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRLNKNKKS 664
IE +VIP GE+V+LLPR S I++ Q+ LVES+ L E G E ++ILP K ++
Sbjct: 460 IEQVVIPKGESVQLLPRPSSIISSQVGLVESFSLKWEVVGQEPKACVRILPHFAPKQVEA 519
Query: 665 FSNSSNSGSTSPKETLGKSLTSSDAGTS-FTRLPFLPE 701
+ + + P ++ +S SD S TRLPFLP+
Sbjct: 520 VARETPA---EPADSDWESHDDSDHTQSGITRLPFLPD 554
>gi|224030195|gb|ACN34173.1| unknown [Zea mays]
Length = 442
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 285/452 (63%), Positives = 339/452 (75%), Gaps = 35/452 (7%)
Query: 275 MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDN 334
MQVP V MQH+VMIEAVENHMPE I+IDEIGTELEA+AA+TIAQRGVQLVGTAHG+TI++
Sbjct: 1 MQVPKVTMQHNVMIEAVENHMPEVIVIDEIGTELEAMAATTIAQRGVQLVGTAHGVTIES 60
Query: 335 IVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRL 394
I+KNP LQ+LVGGIESVTLGDEEAKKRKVQKTILERKGPPTF CAVEMIS+TECRVHHRL
Sbjct: 61 IIKNPCLQMLVGGIESVTLGDEEAKKRKVQKTILERKGPPTFLCAVEMISKTECRVHHRL 120
Query: 395 DATVDAILAGKLPLFEVRQM---DAEHHEPLKVTPILRG---SYPEESELTINEDKSAEM 448
DATVDAILAGK P FE R+M E PL V P S P E+ + + +
Sbjct: 121 DATVDAILAGKPPKFEARKMHNKSTEFEMPL-VIPDREYEIESLPLYQEVMV----TRSL 175
Query: 449 ESDEDSEDEDYASNQFKNRSI------------KRSVRKPSPP-----VCVYTYRILEAD 491
SD + D+ AS Q K++S+ R + P V VYTY+I EAD
Sbjct: 176 SSDGNFSDDFAASRQTKSKSMPSEDNFGDNFVYTRKAKGNKPVHGKSLVQVYTYQISEAD 235
Query: 492 LLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQ 551
+LQVA +MG +DE+DVTDDIG AD ILASSSEMKQNPWI VAK+H+LP+FV+K+NTMAQ
Sbjct: 236 ILQVATMMGFDDELDVTDDIGAADVILASSSEMKQNPWIHNVAKYHKLPIFVVKTNTMAQ 295
Query: 552 MVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIP 611
+VKA+RMI+G ++ + SK P +IEIEDDAPKRKP+LEEIDALEE RLAIEYIVIP
Sbjct: 296 IVKAIRMIVGRDNTSS-SKQPEVMEGEIEIEDDAPKRKPSLEEIDALEEARLAIEYIVIP 354
Query: 612 GGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRLNKNKKSFSNSSNS 671
GGE VELLPR SEIVARQLELVESYQL AE G++ N RLQILP+++ K +S ++
Sbjct: 355 GGEPVELLPRCSEIVARQLELVESYQLLAETFGSDSNSRLQILPMKITKR----GSSKDN 410
Query: 672 GSTSPKETLGKSLTSSD--AGTSFTRLPFLPE 701
G++ P + G L S+ G+SF+RLPFLP+
Sbjct: 411 GASKPTKQTGSDLIVSENGGGSSFSRLPFLPK 442
>gi|166367800|ref|YP_001660073.1| hypothetical protein MAE_50590 [Microcystis aeruginosa NIES-843]
gi|166090173|dbj|BAG04881.1| hypothetical protein MAE_50590 [Microcystis aeruginosa NIES-843]
Length = 603
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 285/596 (47%), Positives = 384/596 (64%), Gaps = 44/596 (7%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
P + +SR +L L +LP+R+R ++ H LIEVVMDLGR P ARFP G
Sbjct: 24 PETLPSSRMPVTDDLNKLLAILPARIRGKIEEHPRQHQLIEVVMDLGRIPEARFPDGAID 83
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ ++ + E+++++I++VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRAV G+
Sbjct: 84 LGDEPISKEEIQYSIARVGSFSGDNRAGIERTLHRISAIRNRDGEIIGLTCRIGRAVFGT 143
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
+I DLVE G S+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH
Sbjct: 144 ITLINDLVETGKSLLLLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPH 203
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGT
Sbjct: 204 PAIGRARRMQVARPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGT 263
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG ++N++KNP+L LVGGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R
Sbjct: 264 AHGNQLENLIKNPTLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFEIAIEMLERQ 323
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVRQMD--------AEHHEPLKVTPILRGSY-PE--- 434
+H + T+D +L G+ + ++R +D E +P K+TP LRG+Y PE
Sbjct: 324 RWVIHEDVSTTIDQLLRGREAIAQIRWVDEEGKVQVTQEEPKPEKLTP-LRGNYLPEMDK 382
Query: 435 ------ESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVY 483
+ +T A + E+ D + + VR P P PV VY
Sbjct: 383 PKGWRADGRMTPVARFGAGGLNRENDFDRLLEQSWLQEEPETEKVRVPGPNGEDWPVYVY 442
Query: 484 TYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFV 543
Y + A + QV + + L I +T D+ ADA+LA S +K +R +AK Q+P+
Sbjct: 443 PYGVSRAPIEQVVQALDL--PIVLTKDLQEADAVLALRSHVKNQSKLRQIAKVRQIPIHG 500
Query: 544 IKSNTMAQMVKAVRMILG----MESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALE 599
IKSNT+ Q+ + ++ ILG M G +L +S SD +EI+ALE
Sbjct: 501 IKSNTLPQISRGLKRILGIDDPMNQEGADMRLFARSGSD--------------DEIEALE 546
Query: 600 EVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
E RLA+E IVIP G+ VELLPR +++ Q ELVE Y+L +++ G E N R++I P
Sbjct: 547 EARLAVEQIVIPTGQPVELLPRSAKVRKMQHELVEHYRLQSDSFGEEPNRRIRIYP 602
>gi|425472177|ref|ZP_18851028.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9701]
gi|389881819|emb|CCI37683.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9701]
Length = 581
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 283/596 (47%), Positives = 381/596 (63%), Gaps = 44/596 (7%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
P + +SR +L L +LP+R+R ++ H LIEVVMDLGR P ARFP G
Sbjct: 2 PETLPSSRMPVTDDLNKLLAILPARIRGKIEEHPRQHQLIEVVMDLGRIPEARFPDGAID 61
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ ++ + E+++++I++VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRAV G+
Sbjct: 62 LGDEPISKEEIQYSIARVGSFSGDNRAGIERTLHRISAIRNRDGEIIGLTCRIGRAVFGT 121
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
+I DLVE G S+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH
Sbjct: 122 ITLINDLVETGKSLLLLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPH 181
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGT
Sbjct: 182 PAIGRARRMQVARPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGT 241
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG ++N++KNP+L LVGGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R
Sbjct: 242 AHGNQLENLIKNPTLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFDIAIEMLERQ 301
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVRQMD--------AEHHEPLKVTPILRGSYPEESEL 438
+H + T+D +L G+ + ++R +D E +P K+TP LRG+Y E +
Sbjct: 302 RWVIHEDVSTTIDQLLRGREAIAQIRWVDEEGKVQVAQEEPKPEKLTP-LRGNYLPEMDK 360
Query: 439 TINEDKSAEME----------SDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVY 483
M + E+ D + + VR P P PV VY
Sbjct: 361 PKGWRADGRMTPVARFPEGPLNRENDFDRLLEQSWLQEEPETEKVRVPGPNGEDWPVYVY 420
Query: 484 TYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFV 543
Y + A + QV + + L I +T D+ ADA+LA S +K +R +AK Q+P+
Sbjct: 421 PYGVSRAPIEQVVQALDL--PIVLTKDLQAADAVLALRSHVKNQSKLRQIAKVRQIPIHG 478
Query: 544 IKSNTMAQMVKAVRMILG----MESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALE 599
IKSNT+ Q+ + ++ ILG M G +L +S SD +EI+ALE
Sbjct: 479 IKSNTLPQISRGLKRILGIDDPMNQEGADLRLFARSGSD--------------DEIEALE 524
Query: 600 EVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
E RLA+E IVIP G+ VELLPR +++ Q ELVE Y+L +++ G E N R++I P
Sbjct: 525 EARLAVEQIVIPTGQPVELLPRSAKVRKMQHELVEHYRLQSDSFGEEPNRRIRIYP 580
>gi|428203424|ref|YP_007082013.1| hypothetical protein Ple7327_3231 [Pleurocapsa sp. PCC 7327]
gi|427980856|gb|AFY78456.1| hypothetical protein Ple7327_3231 [Pleurocapsa sp. PCC 7327]
Length = 583
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 289/599 (48%), Positives = 379/599 (63%), Gaps = 48/599 (8%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
P + + R +L LE+LP ++R ++ H +L L+EVVMDLGR P ARFP+
Sbjct: 2 PETFPSHRMQITDDLNKLLEILPEKIRAKVEQHPKLESLVEVVMDLGRLPEARFPNEAVY 61
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ + V EDL+++I +VG FS DNR+GI+R+LHRISAIRNR +++GLTCRVGRA+ G+
Sbjct: 62 LGDVPVSKEDLQYSIDRVGTFSGDNRAGIERTLHRISAIRNRTGEIVGLTCRVGRAILGT 121
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
E I DLVE G SIL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGD+PH
Sbjct: 122 IEAIRDLVETGKSILLLGRPGVGKTTALREIARVLADEFHKRVVIIDTSNEIAGDGDIPH 181
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEA+AA TIA+RGVQLVGT
Sbjct: 182 PAIGRARRMQVARPELQHQVMIEAVENHMPEIIVIDEIGTELEAMAARTIAERGVQLVGT 241
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG I+N++KNP+L LVGGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R
Sbjct: 242 AHGNRIENLIKNPTLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFEIAIEMLERQ 301
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVRQMD-------AEHHEPLKVTPILRGSYPE--ESE 437
VH + TVD +L G+ P +VR +D E H L+ L S P
Sbjct: 302 RWVVHEDVANTVDDLLRGREPTLQVRTIDENGRVTITEEHPQLQTVGGLVSSTPTVVAPP 361
Query: 438 LTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRS----------VRKPSP-----PVCV 482
S M E E Y++ + + RS +R P P PV V
Sbjct: 362 RPSGWRASGRMTPVSPLEGERYSAKTDFEQMLDRSWYQPEKSSEKIRTPGPNGEDWPVYV 421
Query: 483 YTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVF 542
Y Y + + + QV +++ L I +T D+ AD +LA S +K + +R +A+ Q+P+
Sbjct: 422 YPYGVGRSQIEQVVEILNL--PIVITKDMDNADVVLALRSHVKNHSKLRQIARARQIPIH 479
Query: 543 VIKSNTMAQMVKAVRMILGMESFGTISKLPN-KSTSDIEI-----EDDAPKRKPTLEEID 596
IKSNT+ Q+ +A+R ILGM+ PN T+D+ + DD EI+
Sbjct: 480 GIKSNTIPQITRALRRILGMDD-------PNIPETTDLRLFASNGSDD---------EIE 523
Query: 597 ALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
ALEE RLA+E IVIP G+ VELLPR I Q ELVE Y+L +++ G E N RL+I P
Sbjct: 524 ALEEARLAVEQIVIPTGQPVELLPRSPRIRKMQHELVEHYRLHSDSFGEEPNRRLRIYP 582
>gi|390442301|ref|ZP_10230310.1| conserved hypothetical protein [Microcystis sp. T1-4]
gi|389834387|emb|CCI34436.1| conserved hypothetical protein [Microcystis sp. T1-4]
Length = 581
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 283/596 (47%), Positives = 381/596 (63%), Gaps = 44/596 (7%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
P + +SR +L L +LP+R+R ++ H LIEVVMDLGR P ARFP G
Sbjct: 2 PETLPSSRMPVTDDLNKLLAILPARIRGKIEEHPRQHQLIEVVMDLGRIPEARFPDGAID 61
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ ++ + E+++++I++VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRAV G+
Sbjct: 62 LGDEPISKEEIQYSIARVGSFSGDNRAGIERTLHRISAIRNRDGEIIGLTCRIGRAVFGT 121
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
+I DLVE G S+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH
Sbjct: 122 ITLINDLVETGKSLLLLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPH 181
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGT
Sbjct: 182 PAIGRARRMQVARPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGT 241
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG ++N++KNP+L LVGGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R
Sbjct: 242 AHGNQLENLIKNPTLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFDIAIEMLERQ 301
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVRQMD--------AEHHEPLKVTPILRGSYPEESEL 438
+H + T+D +L G+ + ++R +D E +P K+TP LRG+Y E +
Sbjct: 302 RWVIHEDVSTTIDQLLRGREAIAQIRWVDEEGKVQVAQEEPKPEKLTP-LRGNYLPEMDK 360
Query: 439 TINEDKSAEME----------SDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVY 483
M + E+ D + + VR P P PV VY
Sbjct: 361 PKGWRADGRMTPVARFPAGPLNRENDFDRLLEQSWLQEELETEKVRIPGPNGEDWPVYVY 420
Query: 484 TYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFV 543
Y + A + QV + + L I +T D+ ADA+LA S +K +R +AK Q+P+
Sbjct: 421 PYGVSRAPIEQVVQALDL--PIMLTKDLQGADAVLALRSHVKNQSKLRQIAKVRQIPIHG 478
Query: 544 IKSNTMAQMVKAVRMILG----MESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALE 599
IKSNT+ Q+ + ++ ILG M G +L +S SD +EI+ALE
Sbjct: 479 IKSNTLPQISRGLKRILGIDDPMNQEGADLRLFARSGSD--------------DEIEALE 524
Query: 600 EVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
E RLA+E IVIP G+ VELLPR +++ Q ELVE Y+L +++ G E N R++I P
Sbjct: 525 EARLAVEQIVIPTGQPVELLPRSAKVRKMQHELVEHYRLQSDSFGEEPNRRIRIYP 580
>gi|427723001|ref|YP_007070278.1| single-stranded nucleic acid binding R3H domain-containing protein
[Leptolyngbya sp. PCC 7376]
gi|427354721|gb|AFY37444.1| single-stranded nucleic acid binding R3H domain-containing protein
[Leptolyngbya sp. PCC 7376]
Length = 594
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 285/588 (48%), Positives = 380/588 (64%), Gaps = 46/588 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+LE L +LP + ++L H +LIEVVMDLGR P ARF G + E ++ EDL +
Sbjct: 20 DLEKLLTILPEPLHKQLATHPRRDELIEVVMDLGRIPEARFVEGTEDLGEVVITSEDLAY 79
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++++VG FS DNR+GI+R+LHRISA+RNR+ ++GLTCR+GRAV G+ +I +LVE G S
Sbjct: 80 SVNRVGMFSGDNRAGIERTLHRISAMRNRQGDIVGLTCRIGRAVFGTILMIQELVESGKS 139
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGDVPHS IGRARRMQV +
Sbjct: 140 ILLLGRPGVGKTTALREIARVLADDVGKRVVIIDTSNEIAGDGDVPHSAIGRARRMQVAS 199
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH VMIEAVENHMPE IIIDEIGTELEA AA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 200 PEQQHRVMIEAVENHMPEVIIIDEIGTELEAQAARTIAERGVQLVGTAHGNRIENLIKNP 259
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGDEEA+KR+ QKT+LERK PPTF AVEM+ R + VH + T+D
Sbjct: 260 TLSDLVGGIQAVTLGDEEARKRRSQKTVLERKAPPTFDVAVEMLERQKWVVHEDVSITID 319
Query: 400 AILAGKLPLFEVRQMD--------AEHHEPLKVTPILRGSYPEESELTINEDKSAEMESD 451
+L G PL E+R +D E P+++ P P +SE + +
Sbjct: 320 TLLRGHQPLLEIRTVDDEGNVKVSEEMEHPIEI-PEWNPQTPLKSEPQPSRPRGLRASGK 378
Query: 452 EDSEDEDYASNQFKNRS-------IKRS-----------VRKPSP-----PVCVYTYRIL 488
+F+ RS I +S VR P P PV VY Y +
Sbjct: 379 MTPLPFGSKKKKFQKRSSASLDQMIDQSWTARDPHQAEKVRTPGPNGEDYPVYVYPYGVG 438
Query: 489 EADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNT 548
+ L QV +++ L I +T D+ +ADA+LA S++K + +R +A+ Q+P+ +KSNT
Sbjct: 439 RSQLEQVIEILRLP--IVLTKDLPSADAVLALRSQLKNHSKLRDIAQDQQVPIHAVKSNT 496
Query: 549 MAQMVKAVRMILGMESFGTISKLPN-KSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEY 607
+ Q+ + +R +L M+ PN K +DI + + + +EIDALEE RLA+E
Sbjct: 497 IPQITRGLRRLLNMDD-------PNVKEPTDIRLFSQSN----SDDEIDALEEARLAVEQ 545
Query: 608 IVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
IVIP G+ VELLPR ++I Q EL+E Y+L + + G E N RL+I P
Sbjct: 546 IVIPQGQPVELLPRSAKIRKMQHELIEHYRLQSSSFGEEPNRRLRIFP 593
>gi|422305000|ref|ZP_16392337.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9806]
gi|389789775|emb|CCI14286.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9806]
Length = 603
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 283/596 (47%), Positives = 383/596 (64%), Gaps = 44/596 (7%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
P + +SR +L L +LP+R+R ++ H LIEVVMDLGR P ARFP G
Sbjct: 24 PETLPSSRMPVTDDLNKLLAILPARIRGKIEEHPRQHQLIEVVMDLGRIPEARFPDGAID 83
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ ++ + E+++++I++VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRAV G+
Sbjct: 84 LGDEPISQEEIQYSIARVGSFSGDNRAGIERTLHRISAIRNRDGEIIGLTCRIGRAVFGT 143
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
+I DLVE G S+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH
Sbjct: 144 ITLINDLVETGKSLLLLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPH 203
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGT
Sbjct: 204 PAIGRARRMQVARPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGT 263
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG ++N++KNP+L LVGGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R
Sbjct: 264 AHGNQLENLIKNPTLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFDIAIEMLERQ 323
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVRQMD--------AEHHEPLKVTPILRGSY-PE--- 434
+H + T+D +L G+ + ++R +D E +P +TP LRG+Y PE
Sbjct: 324 RWVIHEDVSTTIDQLLRGREAIAQIRWVDEEGKVQVAQEEPKPENLTP-LRGNYLPEMDK 382
Query: 435 ------ESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVY 483
+ +T A + E+ D + + +R P P PV VY
Sbjct: 383 PKGWRADGRMTPVARFGAGPLNRENDFDRLLEQSWLQEEPETEKIRVPGPNGEDWPVYVY 442
Query: 484 TYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFV 543
Y + A + QV + + L I +T D+ ADA+LA S +K +R +AK Q+P+
Sbjct: 443 PYGVSRAPIEQVVQALDL--PIVLTKDLQGADAVLALRSHVKNQSKLRQIAKVRQIPIHG 500
Query: 544 IKSNTMAQMVKAVRMILG----MESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALE 599
IKSNT+ Q+ + ++ ILG M G +L +S SD +EI+ALE
Sbjct: 501 IKSNTLPQISRGLKRILGIDDPMNQEGADLRLFARSGSD--------------DEIEALE 546
Query: 600 EVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
E RLA+E IVIP G+ VELLPR +++ Q ELVE Y+L +++ G E N R++I P
Sbjct: 547 EARLAVEQIVIPTGQPVELLPRSAKVRKMQHELVEHYRLQSDSFGEEPNRRIRIYP 602
>gi|425449052|ref|ZP_18828896.1| conserved hypothetical protein [Microcystis aeruginosa PCC 7941]
gi|389765138|emb|CCI08948.1| conserved hypothetical protein [Microcystis aeruginosa PCC 7941]
Length = 603
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 282/596 (47%), Positives = 380/596 (63%), Gaps = 44/596 (7%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
P + +SR +L L +LP+R+R ++ H LIEVVMDLGR P ARFP G
Sbjct: 24 PETLPSSRMPVTDDLNKLLAILPARIRGKIEEHPRQHQLIEVVMDLGRIPEARFPDGAID 83
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ ++ + E+++++I++VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRAV G+
Sbjct: 84 LGDEPISKEEIQYSIARVGSFSGDNRAGIERTLHRISAIRNRDGEIIGLTCRIGRAVFGT 143
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
+I DLVE G S+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH
Sbjct: 144 ITLINDLVETGKSLLLLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPH 203
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGT
Sbjct: 204 PAIGRARRMQVSRPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGT 263
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG ++N++KNP+L LVGGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R
Sbjct: 264 AHGNQLENLIKNPTLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFEIAIEMLERQ 323
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVRQMD--------AEHHEPLKVTPILRGSYPEESEL 438
+H + T+D +L G+ + ++R +D E +P +TP LRG+Y E +
Sbjct: 324 RWVIHEDVSTTIDQLLRGREAIAQIRWVDEEGKIQVAQEEPKPENLTP-LRGNYLPEMDK 382
Query: 439 TINEDKSAEME----------SDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVY 483
M + E+ D + + VR P P PV VY
Sbjct: 383 PKGWRADGRMTPVARFPAGPLNRENDFDRLLEQSWLQEEPETEKVRVPGPNGEDWPVYVY 442
Query: 484 TYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFV 543
Y + A + QV + + L I +T D+ ADA+LA S +K +R +AK Q+P+
Sbjct: 443 PYGVSRAPIEQVVQALDL--PIVLTKDLQEADAVLALRSHVKNQSKLRQIAKVRQIPIHG 500
Query: 544 IKSNTMAQMVKAVRMILG----MESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALE 599
IKSNT+ Q+ + ++ ILG M G +L +S SD +EI+ALE
Sbjct: 501 IKSNTLPQISRGLKRILGIDDPMNQEGADLRLFARSGSD--------------DEIEALE 546
Query: 600 EVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
E RLA+E IVIP G+ VELLPR +++ Q ELVE Y+L +++ G E N R++I P
Sbjct: 547 EARLAVEQIVIPTGQPVELLPRSAKVRKMQHELVEHYRLQSDSFGEEPNRRIRIYP 602
>gi|425438133|ref|ZP_18818542.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9432]
gi|389676734|emb|CCH94266.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9432]
Length = 603
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 282/596 (47%), Positives = 380/596 (63%), Gaps = 44/596 (7%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
P + +SR +L L +LP+R+R ++ H LIEVVMDLGR P ARFP G
Sbjct: 24 PETLPSSRMPVTDDLNKLLAILPARIRGKIEEHPRQHQLIEVVMDLGRIPEARFPDGAID 83
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ ++ + E+++++I++VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRAV G+
Sbjct: 84 LGDEPISKEEIQYSIARVGSFSGDNRAGIERTLHRISAIRNRDGEIIGLTCRIGRAVFGT 143
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
+I DLVE G S+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH
Sbjct: 144 ITLINDLVETGKSLLLLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPH 203
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGT
Sbjct: 204 PAIGRARRMQVSRPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGT 263
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG ++N++KNP+L LVGGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R
Sbjct: 264 AHGNQLENLIKNPTLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFDIAIEMLERQ 323
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVRQMD--------AEHHEPLKVTPILRGSYPEESEL 438
+H + T+D +L G+ + ++R +D E +P +TP LRG+Y E +
Sbjct: 324 RWVIHEDVSTTIDQLLRGREAIAQIRWVDEEGKIQVAQEEPKPENLTP-LRGNYLPEMDK 382
Query: 439 TINEDKSAEME----------SDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVY 483
M + E+ D + + VR P P PV VY
Sbjct: 383 PKGWRADGRMTPVARFPAGPLNRENDFDRLLEQSWLQEEPETEKVRVPGPNGEDWPVYVY 442
Query: 484 TYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFV 543
Y + A + QV + + L I +T D+ ADA+LA S +K +R +AK Q+P+
Sbjct: 443 PYGVSRAPIEQVVQALDL--PIVLTKDLQEADAVLALRSHVKNQSKLRQIAKVRQIPIHG 500
Query: 544 IKSNTMAQMVKAVRMILG----MESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALE 599
IKSNT+ Q+ + ++ ILG M G +L +S SD +EI+ALE
Sbjct: 501 IKSNTLPQISRGLKRILGIDDPMNQEGADLRLFARSGSD--------------DEIEALE 546
Query: 600 EVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
E RLA+E IVIP G+ VELLPR +++ Q ELVE Y+L +++ G E N R++I P
Sbjct: 547 EARLAVEQIVIPTGQPVELLPRSAKVRKMQHELVEHYRLQSDSFGEEPNRRIRIYP 602
>gi|425464557|ref|ZP_18843867.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9809]
gi|389833423|emb|CCI22104.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9809]
Length = 581
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 285/596 (47%), Positives = 383/596 (64%), Gaps = 44/596 (7%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
P + +SR +L L +LP+R+R ++ H LIEVVMDLGR P ARFP G
Sbjct: 2 PETLPSSRMPVTDDLNKLLAILPARIRGKIEEHPRQHQLIEVVMDLGRIPEARFPDGAID 61
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ ++ + E+++++I++VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRAV G+
Sbjct: 62 LGDEPISKEEIQYSIARVGSFSGDNRAGIERTLHRISAIRNRDGEIIGLTCRIGRAVFGT 121
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
+I DLVE G S+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH
Sbjct: 122 ITLINDLVETGKSLLLLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPH 181
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGT
Sbjct: 182 PAIGRARRMQVARPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGT 241
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG ++N++KNP+L LVGGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R
Sbjct: 242 AHGNQLENLIKNPTLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFEIAIEMLERQ 301
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVRQMDAE------HHEPL--KVTPILRGSY-PE--- 434
+H + T+D +L G+ + ++R +D E EP +TP LRG+Y PE
Sbjct: 302 RWVIHEDVSTTIDQLLRGREAIAQIRWVDEEGKVQVAQEEPKSENLTP-LRGNYLPEMDK 360
Query: 435 ------ESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVY 483
+ +T A + E+ D + + VR P P PV VY
Sbjct: 361 PKGWRADGRMTPVSRFGAGPLNRENDFDRLLEQSWLQEEPETEKVRVPGPNGEDWPVYVY 420
Query: 484 TYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFV 543
Y + A + QV + + L I +T D+ ADA+LA S +K +R +AK Q+P+
Sbjct: 421 PYGVSRAPIEQVVQALDL--PIVLTKDLQEADAVLALRSHVKNQSKLRQIAKVRQIPIHG 478
Query: 544 IKSNTMAQMVKAVRMILG----MESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALE 599
IKSNT+ Q+ + ++ ILG M G +L +S SD +EI+ALE
Sbjct: 479 IKSNTLPQISRGLKRILGIDDPMNQEGADMRLFARSGSD--------------DEIEALE 524
Query: 600 EVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
E RLA+E IVIP G+ VELLPR +++ Q ELVE Y+L +++ G E N R++I P
Sbjct: 525 EARLAVEQIVIPTGQPVELLPRSAKVRKMQHELVEHYRLQSDSFGEEPNRRIRIYP 580
>gi|425443006|ref|ZP_18823238.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9717]
gi|389715784|emb|CCH99888.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9717]
Length = 603
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/596 (47%), Positives = 380/596 (63%), Gaps = 44/596 (7%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
P + +SR +L L +LP+R+R ++ H LIEVVMDLGR P ARFP G
Sbjct: 24 PETLPSSRMPVTDDLNKLLAILPARIRGKIEEHPRQHQLIEVVMDLGRIPEARFPDGAID 83
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ ++ + E+++++I++VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRAV G+
Sbjct: 84 LGDEPISKEEIQYSIARVGSFSGDNRAGIERTLHRISAIRNRDGEIIGLTCRIGRAVFGT 143
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
+I DLVE G S+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH
Sbjct: 144 ITLINDLVETGKSLLLLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPH 203
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGT
Sbjct: 204 PAIGRARRMQVARPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGT 263
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG ++N++KNP+L LVGGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R
Sbjct: 264 AHGNQLENLIKNPTLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFDIAIEMLERQ 323
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVRQMDAE------HHEPL--KVTPILRGSYPEESEL 438
+H + T+D +L G+ + ++R +D E EP +TP LRG+Y E +
Sbjct: 324 RWVIHEDVSTTIDQLLRGREAIAQIRWVDEEGKVQVAQEEPKSENLTP-LRGNYLPEMDK 382
Query: 439 TINEDKSAEME----------SDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVY 483
M + E+ D + + VR P P PV VY
Sbjct: 383 PKGWRADGRMTPVARFPAGPLNRENDFDRLLEQSWLQEEPETEKVRVPGPNGEDWPVYVY 442
Query: 484 TYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFV 543
Y + A + QV + + L I +T D+ ADA+LA S +K +R +AK Q+P+
Sbjct: 443 PYGVSRAPIEQVVQALDL--PIVLTKDLQGADAVLALRSHVKNQSKLRQIAKVRQIPIHG 500
Query: 544 IKSNTMAQMVKAVRMILG----MESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALE 599
IKSNT+ Q+ + ++ ILG M G +L +S SD +EI+ALE
Sbjct: 501 IKSNTLPQISRGLKRILGIDDPMNQEGADLRLFARSGSD--------------DEIEALE 546
Query: 600 EVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
E RLA+E IVIP G+ VELLPR +++ Q ELVE Y+L +++ G E N R++I P
Sbjct: 547 EARLAVEQIVIPTGQPVELLPRSAKVRKMQHELVEHYRLQSDSFGEEPNRRIRIYP 602
>gi|425459771|ref|ZP_18839257.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9808]
gi|389827687|emb|CCI20874.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9808]
Length = 603
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 281/596 (47%), Positives = 380/596 (63%), Gaps = 44/596 (7%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
P + +SR +L L +LP+R+R ++ H LIEVVMDLGR P ARFP G
Sbjct: 24 PETLPSSRMPVTDDLNKLLAILPARIRGKIEEHPRQHQLIEVVMDLGRIPEARFPDGAID 83
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ ++ + E+++++I++VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRAV G+
Sbjct: 84 LGDEPISKEEIQYSIARVGSFSGDNRAGIERTLHRISAIRNRDGEIIGLTCRIGRAVFGT 143
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
+I DLVE G S+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH
Sbjct: 144 ITLINDLVETGKSLLLLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPH 203
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGT
Sbjct: 204 PAIGRARRMQVARPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGT 263
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG ++N++KNP+L LVGGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R
Sbjct: 264 AHGNQLENLIKNPTLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFEIAIEMLERQ 323
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVRQMD--------AEHHEPLKVTPILRGSYPEESEL 438
+H + T+D +L G+ + ++R +D E +P +TP LRG+Y E +
Sbjct: 324 RWVIHEDVSTTIDQLLRGREAIAQIRWVDEEGKVQVAQEEPKPENLTP-LRGNYLPEMDK 382
Query: 439 TINEDKSAEME----------SDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVY 483
M + E+ D + + VR P P PV VY
Sbjct: 383 PKGWRADGRMTPVARFPAGPLNRENDFDRLLEQSWLQEEPETEKVRVPGPNGEDWPVYVY 442
Query: 484 TYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFV 543
Y + A + QV + + L I +T D+ ADA+LA S +K +R +AK Q+P+
Sbjct: 443 PYGVSRAPIEQVVQALDL--PIVLTKDLQEADAVLALRSHVKNQSKLRQIAKVRQIPIHG 500
Query: 544 IKSNTMAQMVKAVRMILG----MESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALE 599
IKSNT+ Q+ + ++ ILG M G +L +S +D +EI+ALE
Sbjct: 501 IKSNTLPQISRGLKRILGIDDPMNQEGADLRLFARSGND--------------DEIEALE 546
Query: 600 EVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
E RLA+E IVIP G+ VELLPR +++ Q ELVE Y+L +++ G E N R++I P
Sbjct: 547 EARLAVEQIVIPTGQPVELLPRSAKVRKMQHELVEHYRLQSDSFGEEPNRRIRIYP 602
>gi|159026253|emb|CAO86402.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 603
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 281/596 (47%), Positives = 380/596 (63%), Gaps = 44/596 (7%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
P + +SR +L L +LP+R+R ++ H LIEVVMDLGR P ARFP G
Sbjct: 24 PETLPSSRMPVTDDLNKLLAILPARIRGKIEEHPRQHQLIEVVMDLGRIPEARFPDGAID 83
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ ++ + E+++++I++VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRAV G+
Sbjct: 84 LGDEPISKEEIQYSIARVGSFSGDNRAGIERTLHRISAIRNRDGEIIGLTCRIGRAVFGT 143
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
+I DLVE G S+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH
Sbjct: 144 ITLINDLVETGKSLLLLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPH 203
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGT
Sbjct: 204 PAIGRARRMQVSRPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGT 263
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG ++N++KNP+L LVGGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R
Sbjct: 264 AHGNQLENLIKNPTLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFDIAIEMLERQ 323
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVRQMD--------AEHHEPLKVTPILRGSYPEESEL 438
+H + T+D +L G+ + ++R +D E +P +TP LRG+Y E +
Sbjct: 324 RWVIHEDVSTTIDQLLRGREAIAQIRWVDEEGKIQVAQEEPKPENLTP-LRGNYLPEMDK 382
Query: 439 TINEDKSAEME----------SDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVY 483
M + E+ D + + VR P P PV VY
Sbjct: 383 PKGWRADGRMTPVARFPAGPLNRENDFDRLLEQSWLQEELETEKVRVPGPNGEDWPVYVY 442
Query: 484 TYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFV 543
Y + A + QV + + L I +T D+ ADA+LA S +K +R +AK Q+P+
Sbjct: 443 PYGVSRAPIEQVVQALDL--PIVLTKDLQGADAVLALRSHVKNQSKLRQIAKVRQIPIHG 500
Query: 544 IKSNTMAQMVKAVRMILG----MESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALE 599
IKSNT+ Q+ + ++ ILG M G +L +S +D +EI+ALE
Sbjct: 501 IKSNTLPQISRGLKRILGIDDPMNQEGADLRLFARSGND--------------DEIEALE 546
Query: 600 EVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
E RLA+E IVIP G+ VELLPR +++ Q ELVE Y+L +++ G E N R++I P
Sbjct: 547 EARLAVEQIVIPTGQPVELLPRSAKVRKMQHELVEHYRLQSDSFGEEPNRRIRIYP 602
>gi|307155037|ref|YP_003890421.1| single-stranded nucleic acid-binding R3H domain-containing protein
[Cyanothece sp. PCC 7822]
gi|306985265|gb|ADN17146.1| single-stranded nucleic acid binding R3H domain protein [Cyanothece
sp. PCC 7822]
Length = 605
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 285/595 (47%), Positives = 377/595 (63%), Gaps = 40/595 (6%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
P + R +L L +LP ++R + H + L+EVVMDLGR P ARF
Sbjct: 24 PEKFPSQRMQITDDLNQLLAILPPQIREIIEQHPKHSHLVEVVMDLGRLPEARFADVAID 83
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ V EDL+H I +VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRA+ G+
Sbjct: 84 LGNTPVSKEDLQHCIHRVGSFSGDNRAGIERTLHRISAIRNRTGEIIGLTCRIGRAIFGT 143
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
+I DLVE G SIL++G PGVGKTT +REIAR+LADD+ KRVVI+DTSNEI GDGD+PH
Sbjct: 144 ISMIEDLVETGQSILMLGRPGVGKTTALREIARVLADDYNKRVVIIDTSNEIAGDGDIPH 203
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGT
Sbjct: 204 PAIGRARRMQVARPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGT 263
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG I+N++KNP+L LVGGI++VTLGDEEA++R QKT+LERK PPTF AVEM+ R
Sbjct: 264 AHGNRIENLIKNPTLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFQIAVEMLERQ 323
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKVT-----PILRGSYPEESELT-- 439
VH + TVD +L G+ P+ +VR +D EH E +K+T P++ G+ + +
Sbjct: 324 RWVVHEDVAETVDNLLRGREPVLQVRTVD-EHGE-VKITQEESQPVINGTMAKSATSVAP 381
Query: 440 --------------INEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PV 480
+ S+ D + + + VR P P PV
Sbjct: 382 ARPTGWRASGRMAPVTPLASSHKNGKTLEFDRMLEQSWLQEEPVTEKVRTPGPNGEDLPV 441
Query: 481 CVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLP 540
VY Y I + L QV ++ L + VT D+ ADA+LA S +K + +R ++K Q+P
Sbjct: 442 YVYPYGISRSQLDQVIDLLNL--PVSVTKDLNGADAVLALRSHVKNHSKLRQISKARQVP 499
Query: 541 VFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEE 600
++ IKSNT+ Q+ + ++ +LGM+ KLP D+ + R +EI+ALEE
Sbjct: 500 IYGIKSNTIPQISRGLQRLLGMDD----PKLP--EAFDLRLF----TRGGNDDEIEALEE 549
Query: 601 VRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
RLA+E IVIP G+ VELLPR ++I Q ELVE Y+L +++ G E N RL+I P
Sbjct: 550 ARLAVEQIVIPTGQPVELLPRSAKIRKMQHELVEHYRLQSDSLGEEPNRRLRIYP 604
>gi|425447044|ref|ZP_18827039.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9443]
gi|389732499|emb|CCI03582.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9443]
Length = 603
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/596 (47%), Positives = 379/596 (63%), Gaps = 44/596 (7%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
P + +SR +L L +LP R+R ++ H LIEVVMDLGR P ARFP G
Sbjct: 24 PETLPSSRMPVTEDLNKLLAILPVRIRGKIEEHPRQHQLIEVVMDLGRIPEARFPDGAID 83
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ ++ + E+++++I++VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRAV G+
Sbjct: 84 LGDEPISKEEIQYSIARVGSFSGDNRAGIERTLHRISAIRNRDGEIIGLTCRIGRAVFGT 143
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
+I DLVE G S+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH
Sbjct: 144 ITLINDLVETGKSLLLLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPH 203
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGT
Sbjct: 204 PAIGRARRMQVARPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGT 263
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG ++N++KNP+L LVGGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R
Sbjct: 264 AHGNQLENLIKNPTLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFDIAIEMLERQ 323
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVRQMDAE------HHEPL--KVTPILRGSYPEESEL 438
+H + T+D +L G+ + ++R +D E EP +TP LRG+Y E +
Sbjct: 324 RWVIHEDVSTTIDQLLRGREAIAQIRWVDEEGKVQVAQEEPKSENLTP-LRGNYLPEMDK 382
Query: 439 TINEDKSAEME----------SDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVY 483
M + E+ D + + VR P P PV VY
Sbjct: 383 PKGWRADGRMTPVARFPAGPLNRENDFDRLLEQSWLQEEPETEKVRVPGPNGEDWPVYVY 442
Query: 484 TYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFV 543
Y + A + QV + + L I +T D+ ADA+LA S +K +R +AK Q+P+
Sbjct: 443 PYGVSRAPIEQVVQALDL--PIVLTKDLQGADAVLALRSHVKNQSKLRQIAKVRQIPIHG 500
Query: 544 IKSNTMAQMVKAVRMILG----MESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALE 599
IKSNT+ Q+ + ++ ILG M G +L +S SD +EI+ALE
Sbjct: 501 IKSNTLPQISRGLKRILGIDDPMNQEGADLRLFARSGSD--------------DEIEALE 546
Query: 600 EVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
E RLA+E IVIP G+ VELLPR +++ Q ELVE Y+L +++ G E N R++I P
Sbjct: 547 EARLAVEQIVIPTGQPVELLPRSAKVRKMQHELVEHYRLQSDSFGEEPNRRIRIYP 602
>gi|425455395|ref|ZP_18835115.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9807]
gi|389803727|emb|CCI17377.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9807]
Length = 603
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 284/596 (47%), Positives = 379/596 (63%), Gaps = 44/596 (7%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
P + +SR +L L +LP R+R ++ H LIEVVMDLGR P ARFP G
Sbjct: 24 PETLPSSRMPVTDDLNKLLAILPVRIRSKIEEHPRQHQLIEVVMDLGRIPEARFPDGAID 83
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ ++ + E+++++I++VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRAV G+
Sbjct: 84 LGDEPISKEEIQYSIARVGSFSGDNRAGIERTLHRISAIRNRDGEIIGLTCRIGRAVFGT 143
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
+I DLVE G S+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH
Sbjct: 144 ITLINDLVETGKSLLLLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPH 203
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGT
Sbjct: 204 PAIGRARRMQVARPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGT 263
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG ++N++KNP+L LVGGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R
Sbjct: 264 AHGNQLENLIKNPTLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFDIAIEMLERQ 323
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVRQMDAE------HHEPL--KVTPILRGSYPEESEL 438
+H + T+D +L G+ + ++R +D E EP +TP LRG+Y E +
Sbjct: 324 RWVIHEDVSTTIDQLLRGREAIAQIRWVDEEGKVQVAQEEPKSENLTP-LRGNYLPEMDK 382
Query: 439 TINEDKSAEME----------SDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVY 483
M + E+ D + + VR P P PV VY
Sbjct: 383 PKGWRADGRMTPVARFPAGPLNRENDFDRLLEQSWLQEEPETEKVRVPGPNGEDWPVYVY 442
Query: 484 TYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFV 543
Y + A + QV V L+ I +T D+ ADA+LA S +K +R +AK Q+P+
Sbjct: 443 PYGVSRAPIEQV--VQSLDLPIVLTKDLQGADAVLALRSHVKNQSKLRQIAKVRQIPIHG 500
Query: 544 IKSNTMAQMVKAVRMILG----MESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALE 599
IKSNT+ Q+ + ++ ILG M G +L +S SD +EI+ALE
Sbjct: 501 IKSNTLPQISRGLKRILGIDDPMNQEGADLRLFARSGSD--------------DEIEALE 546
Query: 600 EVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
E RLA+E IVIP G+ VELLPR +++ Q ELVE Y+L +++ G E N R++I P
Sbjct: 547 EARLAVEQIVIPTGQPVELLPRSAKVRKMQHELVEHYRLQSDSFGEEPNRRIRIYP 602
>gi|218441457|ref|YP_002379786.1| single-stranded nucleic acid binding R3H domain-containing protein
[Cyanothece sp. PCC 7424]
gi|218174185|gb|ACK72918.1| single-stranded nucleic acid binding R3H domain protein [Cyanothece
sp. PCC 7424]
Length = 605
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 281/598 (46%), Positives = 374/598 (62%), Gaps = 46/598 (7%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
P + + R +L L++LP ++ + H L+EVVMDLGR P ARF G
Sbjct: 24 PQTFPSHRMQITDDLNQLLDILPPQIHSIIEQHPNRNQLVEVVMDLGRLPEARFSQGAID 83
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ V EDL+H I++VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRA+ G+
Sbjct: 84 LGNTPVSKEDLQHCINRVGSFSGDNRAGIERTLHRISAIRNRTGEIIGLTCRIGRAIFGT 143
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
+I DLVE G SIL++G PGVGKTT +REIAR+LADD+ KRVVI+DTSNEI GDGD+PH
Sbjct: 144 IAMIEDLVETGQSILMLGRPGVGKTTALREIARVLADDYNKRVVIIDTSNEIAGDGDIPH 203
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGT
Sbjct: 204 PAIGRARRMQVARPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGT 263
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG IDN++KNP+L LVGGI++VTLGDEEA++R QKT+LERK PPTF AVEM+ R
Sbjct: 264 AHGNRIDNLIKNPTLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFEIAVEMLERQ 323
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVRQMD-----------AEHHEPLKVTPILRGSYPEE 435
VH + TVD +L G+ P+ ++R +D + H P ++ + P+
Sbjct: 324 RWVVHEDVAETVDNLLRGREPILQIRTVDENGEVQITSEQPQTHAPSSLSKSVTSVAPDR 383
Query: 436 -------------SELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP---- 478
+ L ++ D E + + VR P P
Sbjct: 384 PTGWRASGRMTPVTPLGTTHKNGKTLDFDRMLE-----QSWLHQEPVTEKVRTPGPNGED 438
Query: 479 -PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFH 537
PV VY Y I + L QV +++ L + VT D+ ADA+LA S +K + +R +AK
Sbjct: 439 LPVYVYPYGISRSQLDQVVELLNL--PVAVTKDLKEADAVLALRSHVKNHSKLRQIAKGQ 496
Query: 538 QLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDA 597
Q+P++ IKSNT+ Q+ + ++ +LG++ KLP D+ + +EI+A
Sbjct: 497 QIPIYGIKSNTIPQISRGLQRLLGIDD----PKLP--EAFDLRLFTQGGND----DEIEA 546
Query: 598 LEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
LEE RLA+E IVIP G+ VELLPR ++I Q ELVE Y+L +++ G E N RL+I P
Sbjct: 547 LEEARLAVEQIVIPTGQPVELLPRSAKIRKMQHELVEHYRLQSDSFGEEPNRRLRIYP 604
>gi|440754058|ref|ZP_20933260.1| R3H domain protein [Microcystis aeruginosa TAIHU98]
gi|440174264|gb|ELP53633.1| R3H domain protein [Microcystis aeruginosa TAIHU98]
Length = 572
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 278/583 (47%), Positives = 375/583 (64%), Gaps = 44/583 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L +LP+R+R ++ H LIEVVMDLGR P ARFP G + ++ + E++++
Sbjct: 6 DLNKLLAILPARIRGKIEEHPRQHQLIEVVMDLGRIPEARFPDGAIDLGDEPISKEEIQY 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+I++VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRAV G+ +I DLVE G S
Sbjct: 66 SIARVGSFSGDNRAGIERTLHRISAIRNRDGEIIGLTCRIGRAVFGTITLINDLVETGKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 126 LLLLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVSR 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG ++N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQLENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R +H + T+D
Sbjct: 246 TLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFDIAIEMLERQRWVIHEDVSTTID 305
Query: 400 AILAGKLPLFEVRQMD--------AEHHEPLKVTPILRGSYPEESELTINEDKSAEME-- 449
+L G+ + ++R +D E +P +TP LRG+Y E + M
Sbjct: 306 QLLRGREAIAQIRWVDEEGKVQVAQEEPKPENLTP-LRGNYLPEMDKPKGWRADGRMTPV 364
Query: 450 --------SDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVYTYRILEADLLQVA 496
+ E+ D + + VR P P PV VY Y + A + QV
Sbjct: 365 ARFPAGPLNRENDFDRLLEQSWLQEEPETEKVRVPGPNGEDWPVYVYPYGVSRAPIEQVV 424
Query: 497 KVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAV 556
+ + L I +T D+ ADA+LA S +K +R +AK Q+P+ IKSNT+ Q+ + +
Sbjct: 425 QALDL--PIVLTKDLQEADAVLALRSHVKNQSKLRQIAKVRQIPIHGIKSNTLPQISRGL 482
Query: 557 RMILG----MESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPG 612
+ ILG M G +L +S +D +EI+ALEE RLA+E IVIP
Sbjct: 483 KRILGIDDPMNQEGADLRLFARSGND--------------DEIEALEEARLAVEQIVIPT 528
Query: 613 GEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
G+ VELLPR +++ Q ELVE Y+L +++ G E N R++I P
Sbjct: 529 GQPVELLPRSAKVRKMQHELVEHYRLQSDSFGEEPNRRIRIYP 571
>gi|443669237|ref|ZP_21134472.1| R3H domain protein [Microcystis aeruginosa DIANCHI905]
gi|443330479|gb|ELS45192.1| R3H domain protein [Microcystis aeruginosa DIANCHI905]
Length = 572
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 278/583 (47%), Positives = 375/583 (64%), Gaps = 44/583 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L +LP+R+R ++ H LIEVVMDLGR P ARFP G + ++ + E++++
Sbjct: 6 DLNKLLAILPARIRGKIEEHPRQHQLIEVVMDLGRIPEARFPDGAIDLGDEPISKEEIQY 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+I++VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRAV G+ +I DLVE G S
Sbjct: 66 SIARVGSFSGDNRAGIERTLHRISAIRNRDGEIIGLTCRIGRAVFGTITLINDLVETGKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 126 LLLLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVSR 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG ++N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQLENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R +H + T+D
Sbjct: 246 TLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFDIAIEMLERQRWVIHEDVSTTID 305
Query: 400 AILAGKLPLFEVRQMD--------AEHHEPLKVTPILRGSYPEESELTINEDKSAEME-- 449
+L G+ + ++R +D E +P +TP LRG+Y E + M
Sbjct: 306 QLLRGREAIAQIRWVDEEGKIQVAQEEPKPENLTP-LRGNYLPEMDKPKGWRADGRMTPV 364
Query: 450 --------SDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVYTYRILEADLLQVA 496
+ E+ D + + VR P P PV VY Y + A + QV
Sbjct: 365 ARFPAGPLNRENDFDRLLEQSWLQEELETEKVRVPGPNGEDWPVYVYPYGVSRAPIEQVV 424
Query: 497 KVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAV 556
+ + L I +T D+ ADA+LA S +K +R +AK Q+P+ IKSNT+ Q+ + +
Sbjct: 425 QALDL--PIVLTKDLQGADAVLALRSHVKNQSKLRQIAKVRQIPIHGIKSNTLPQISRGL 482
Query: 557 RMILG----MESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPG 612
+ ILG M G +L +S +D +EI+ALEE RLA+E IVIP
Sbjct: 483 KRILGIDDPMNQEGADLRLFARSGND--------------DEIEALEEARLAVEQIVIPT 528
Query: 613 GEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
G+ VELLPR +++ Q ELVE Y+L +++ G E N R++I P
Sbjct: 529 GQPVELLPRSAKVRKMQHELVEHYRLQSDSFGEEPNRRIRIYP 571
>gi|81299436|ref|YP_399644.1| single-stranded nucleic acid binding R3H [Synechococcus elongatus
PCC 7942]
gi|81168317|gb|ABB56657.1| Single-stranded nucleic acid binding R3H [Synechococcus elongatus
PCC 7942]
Length = 588
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 285/591 (48%), Positives = 373/591 (63%), Gaps = 35/591 (5%)
Query: 86 SPNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDW 145
+P A+ L+ LE+LP ++R +L H + L+EVV+DLGR P ARFP G
Sbjct: 11 TPELAAVREKTVVDNLDELLEILPPQLRDQLLRHPQKDRLVEVVLDLGRFPEARFPEGAE 70
Query: 146 VISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAG 205
+SE V EDL + ++VGDF DNR+GI+R+LHRISAIRNRK +VIGLTCRVGRAV G
Sbjct: 71 YLSETPVSREDLAYCAARVGDFGADNRAGIERTLHRISAIRNRKGEVIGLTCRVGRAVFG 130
Query: 206 SAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
+ +I DLVE G S+L +G PGVGKTT +RE+AR+LADD +KRVVI+DTSNEI GDGD+P
Sbjct: 131 TVGMIRDLVETGQSLLFLGRPGVGKTTALREVARVLADDLLKRVVIIDTSNEIAGDGDIP 190
Query: 266 HSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVG 325
H IGRARR+QV +QH VMIEAVENHMPE IIIDEIGTELEALAA TIA+RGVQLVG
Sbjct: 191 HPAIGRARRLQVARPELQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVG 250
Query: 326 TAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISR 385
TAHG I+N++KNP+L LVGGI+SVTLGD+EA++R QKT+LERK PPTF AVEM+ R
Sbjct: 251 TAHGNQIENLIKNPTLSDLVGGIQSVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMLER 310
Query: 386 TECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTIN---- 441
VH + TVD +L P +VR + + + + P + + + + +T
Sbjct: 311 YRWVVHEDVANTVDLLLRQGQPNPQVRTLSEDGR--VLIAPAFKDAPKQPASVTQQTWSH 368
Query: 442 -EDK----SAEME----------SDEDSEDEDYASNQFKNRSIKRSV--RKPSPPVCVYT 484
D+ S M + ED D + A Q + R V P+ VY
Sbjct: 369 TSDRGWRSSGRMRPLPPVLDVPTTREDLRDPEVAFEQALATDVARPVGPNGEELPLHVYP 428
Query: 485 YRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVI 544
Y + L QV + L + +T D+ AD +LA +K +R VA+ H +P+ VI
Sbjct: 429 YAVSRHYLEQVIDTLQL--PVLLTKDLADADVVLALRGNLKGQSKLRHVARNHHVPIHVI 486
Query: 545 KSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLA 604
KSNTM Q+V+A+R +L E +L T ++E+ A K +EI+ALEE RLA
Sbjct: 487 KSNTMPQIVRALRRLLNQE------QLDEPETVNLELFTKAGKN----DEIEALEEARLA 536
Query: 605 IEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
+E IV+P G+ VELLPR + + Q ELVE Y+L + + G E N RL+I P
Sbjct: 537 VEQIVLPKGQPVELLPRSAIVRKMQHELVEHYRLKSASFGEEPNRRLRIFP 587
>gi|428774384|ref|YP_007166172.1| single-stranded nucleic acid binding R3H domain-containing protein
[Cyanobacterium stanieri PCC 7202]
gi|428688663|gb|AFZ48523.1| single-stranded nucleic acid binding R3H domain-containing protein
[Cyanobacterium stanieri PCC 7202]
Length = 580
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 279/587 (47%), Positives = 382/587 (65%), Gaps = 53/587 (9%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L +LP ++ + H + LIE+V+DLGRKP ARF +SE++V EDL+H
Sbjct: 15 DLDKLLHILPLNIQNAIASHPDKKSLIEIVLDLGRKPEARFVDQTCYLSEEVVSREDLEH 74
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++VG FS DNR+GI+ +LHRISAIRNR+ ++IGLTCR+GRAV G+ +I +LVE G S
Sbjct: 75 CTARVGHFSADNRAGIEGTLHRISAIRNRQEKIIGLTCRIGRAVFGTILMIRELVESGQS 134
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 135 ILLLGRPGVGKTTALREIARVLADELEKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAR 194
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE IIIDEIGTELEALAA TIA+RGVQLVGTAHG ++N++KNP
Sbjct: 195 PELQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNHLENLIKNP 254
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI+SVTLGD+EA++R QKT+LERK PPTF AVEM R + VH + TVD
Sbjct: 255 TLSDLIGGIQSVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMWERQKWVVHEEVAQTVD 314
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGS---YPE-ESELTINE------------- 442
IL G+ + ++RQ+D E + P L S PE + E +N
Sbjct: 315 NILRGRQIIPQLRQVDDEGKVSITRDPNLAPSNERLPEPQWETMMNAPVKPSGLRASGKM 374
Query: 443 -----DKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVYTYRILEADL 492
+ S +ME ++ ++ Y +++ +R P P PV VY Y + + L
Sbjct: 375 IPLQPESSPQMEFNQLLDNSWYQADEVN------KIRTPGPNGEDWPVYVYPYGVGRSQL 428
Query: 493 LQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQM 552
QV V+ L I T D+ +ADA+LA S++K + + +AK Q+P++ IKSN++ Q+
Sbjct: 429 EQVINVLKL--PITFTKDLDSADAVLALRSQVKHHGKLMQLAKNRQVPIYSIKSNSIPQI 486
Query: 553 VKAVRMILGMESFGTIS----KLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYI 608
+A+R ++ M++ T +L K+ SD +EI+ALEE RLA+E I
Sbjct: 487 TRALRKLVNMDNPDTPESADLRLFTKAGSD--------------DEIEALEEARLAVEQI 532
Query: 609 VIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
VIP G+ VELLPR +++ Q EL+E Y+L +++ G E N RL+I P
Sbjct: 533 VIPQGQPVELLPRNAKVRKMQHELIEHYRLRSDSFGNEPNRRLRIYP 579
>gi|145327231|ref|NP_001077817.1| P-loop containing nucleoside triphosphate hydrolase [Arabidopsis
thaliana]
gi|332197302|gb|AEE35423.1| P-loop containing nucleoside triphosphate hydrolase [Arabidopsis
thaliana]
Length = 538
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 270/556 (48%), Positives = 367/556 (66%), Gaps = 51/556 (9%)
Query: 164 VGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVI 223
VG+F++DNR+GI R+LHRISAIRNRK ++IGLTCRVGR+V GSA ++ DLV+ G S+L+I
Sbjct: 16 VGEFTNDNRAGISRTLHRISAIRNRKGEIIGLTCRVGRSVRGSANLLRDLVQDGNSLLLI 75
Query: 224 GPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQ 283
GPPGVGKTT+IRE+ARML +D+ KRV+IVDTSNEIGGDGD+PH GIG ARRMQVPN ++Q
Sbjct: 76 GPPGVGKTTMIREVARMLGNDYEKRVMIVDTSNEIGGDGDIPHPGIGNARRMQVPNSDIQ 135
Query: 284 HSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQI 343
H V+IEAVENHMP+ I+IDEIGT+LEA+AASTIA+RG+QLV TAHG TI+N++KNPSL +
Sbjct: 136 HKVLIEAVENHMPQVIVIDEIGTKLEAIAASTIAERGIQLVATAHGATIENLIKNPSLDL 195
Query: 344 LVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILA 403
LVGG++SVTLGDEEA +R QKT+LERKGP TF C E++S+TE RVH L+ATVDAILA
Sbjct: 196 LVGGVQSVTLGDEEATRRGGQKTVLERKGPSTFNCGAEIVSKTEVRVHRSLEATVDAILA 255
Query: 404 GKLPLFEVRQMDAE------HHEPLKVTPILRGSYPEE----SELTINEDKSAEMESDED 453
G+LP E+R++ + EP + + EE S+LT E S +++ E
Sbjct: 256 GRLPNVEIRKIKSHGVEVIMEKEPFIDEKTVDKKHEEETLDVSKLTKEETVSEVLQTKEI 315
Query: 454 SEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGT 513
+E E + + +Y Y I E+ +LQ K + +E +++TDDI
Sbjct: 316 TEAESSEKDTL---------------MYLYVYGIAESTVLQAIKQLEMETAVELTDDISE 360
Query: 514 ADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMIL-----GMESFGTI 568
A+A+LA +++++NP I+ A H +PV+V K+N+ Q+ KA+R +L G+ FG+
Sbjct: 361 AEALLALQAKIRKNPRIKSFATSHGIPVYVTKTNSGIQVAKAIRALLTDYEDGLGEFGS- 419
Query: 569 SKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVAR 628
ED R E++DALEE RLAIE IVIP E +LLPR IV+
Sbjct: 420 -------------ED----RLKLSEKMDALEEARLAIERIVIPKKETTDLLPRPPRIVSL 462
Query: 629 QLELVESYQLAAENSGTELNPRLQILPLRLNKNKKSFSNSSNSGSTSPKET--LGKSL-T 685
Q +LV Y L +E L+ILP +++ + G + +E LG +
Sbjct: 463 QGKLVRKYNLRSERKWRGDEMYLRILPYSTEEDRDDREDEGEFGEANGEELDELGFATGE 522
Query: 686 SSDAGTSFTRLPFLPE 701
S+D+ + RLP LP+
Sbjct: 523 SNDSPSGIDRLPLLPD 538
>gi|428314326|ref|YP_007125303.1| hypothetical protein Mic7113_6310 [Microcoleus sp. PCC 7113]
gi|428255938|gb|AFZ21897.1| hypothetical protein Mic7113_6310 [Microcoleus sp. PCC 7113]
Length = 611
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 290/614 (47%), Positives = 385/614 (62%), Gaps = 49/614 (7%)
Query: 72 PSDWAPPRNGSVSDSPNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMD 131
PSD N S P + ++ R +L+ L++LP +R L H + LIEVVMD
Sbjct: 16 PSDQKVLSNQESSVLPENITSQRMQITDDLQKLLDILPEEIRSVLEQHPQQDRLIEVVMD 75
Query: 132 LGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQ 191
LGR P RFP G + E + E + H + +VG FS DNR+GI+R+LHRISAIRNR +
Sbjct: 76 LGRFPEVRFPQGAEYLLETPITQEQINHCVQRVGHFSGDNRAGIERTLHRISAIRNRPGE 135
Query: 192 VIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVI 251
+IGLTCRVGRAV G+ +I DLVE G SIL++G PGVGKTT +REIAR+LADD KRVVI
Sbjct: 136 IIGLTCRVGRAVFGTIGMIRDLVETGQSILMLGRPGVGKTTALREIARVLADDLHKRVVI 195
Query: 252 VDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEAL 311
+DTSNEI GDGD+PH IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEAL
Sbjct: 196 IDTSNEIAGDGDIPHPAIGRARRMQVARPELQHQVMIEAVENHMPEVIVIDEIGTELEAL 255
Query: 312 AASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERK 371
AA TIA+RGVQLVGTAHG I+N++KNP+L LVGGI++VTLGD+EA++R QKT+LERK
Sbjct: 256 AARTIAERGVQLVGTAHGNRIENLIKNPTLSDLVGGIQAVTLGDDEARRRGSQKTVLERK 315
Query: 372 GPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKVTPILR-- 429
PPTF A+EM+ R VH + TVD +L G+ P +VR HE KVT I R
Sbjct: 316 APPTFDIAIEMLERQRWVVHESVSDTVDDLLRGRQPNPQVRTA----HENGKVT-ITREF 370
Query: 430 -----GSYPEESELTINEDK------SAEMESDEDSEDEDYASN----QFKNRSIKRS-- 472
+ P + L+ + K S +M+ E Y+ N Q N+S +
Sbjct: 371 PTAPVATPPNRAGLSSVQAKSTGWRSSGQMKPLSRPLAEPYSENRNFEQLLNQSWQEQDD 430
Query: 473 ----VRKPSP-----PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSE 523
VR P P P+ +Y Y + L QV +V+ L + +T D+ +ADA+L+ S
Sbjct: 431 FANGVRMPGPNGEDLPLHIYPYGVSRHQLEQVIQVLNL--PVVLTKDMDSADAVLSLRSH 488
Query: 524 MKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGME--SFGTISKLPNKSTSDIEI 581
+K + +R +AK +P+ +KS+T+ Q+ +A+R +L M+ S ++ L + S E
Sbjct: 489 VKNHGKLRSIAKARHVPIHSVKSSTIPQITRALRHMLDMDDPSMPEVTDLRLFTQSGTE- 547
Query: 582 EDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAE 641
+EI+ALEE RLA+E IV+P G+ VELLPR ++ Q ELVE Y+L ++
Sbjct: 548 -----------DEIEALEEARLAVEQIVLPKGQPVELLPRSPKVRKMQHELVEHYRLKSD 596
Query: 642 NSGTELNPRLQILP 655
+ G E N RL+I P
Sbjct: 597 SFGDEPNRRLRIYP 610
>gi|16329574|ref|NP_440302.1| hypothetical protein slr0692 [Synechocystis sp. PCC 6803]
gi|383321315|ref|YP_005382168.1| hypothetical protein SYNGTI_0406 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383324485|ref|YP_005385338.1| hypothetical protein SYNPCCP_0406 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383490369|ref|YP_005408045.1| hypothetical protein SYNPCCN_0406 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384435635|ref|YP_005650359.1| hypothetical protein SYNGTS_0406 [Synechocystis sp. PCC 6803]
gi|451813733|ref|YP_007450185.1| YCF45 protein [Synechocystis sp. PCC 6803]
gi|1652057|dbj|BAA16982.1| ycf45 [Synechocystis sp. PCC 6803]
gi|339272667|dbj|BAK49154.1| hypothetical protein SYNGTS_0406 [Synechocystis sp. PCC 6803]
gi|359270634|dbj|BAL28153.1| hypothetical protein SYNGTI_0406 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359273805|dbj|BAL31323.1| hypothetical protein SYNPCCN_0406 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359276975|dbj|BAL34492.1| hypothetical protein SYNPCCP_0406 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407957455|dbj|BAM50695.1| hypothetical protein BEST7613_1764 [Synechocystis sp. PCC 6803]
gi|451779702|gb|AGF50671.1| YCF45 protein [Synechocystis sp. PCC 6803]
Length = 589
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 279/593 (47%), Positives = 381/593 (64%), Gaps = 56/593 (9%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+LE L +LP ++ + H + L+EVVMDLGR P ARFP + + + EDL++
Sbjct: 15 DLEQLLSILPKPIQAIIAEHPQRQQLVEVVMDLGRLPEARFPGTAVYLGHEPIAKEDLQY 74
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
AI +VG FS DNR+GI+R+LHRISAIRNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 75 AIDRVGLFSSDNRAGIERTLHRISAIRNRTNEIIGLTCRVGRAVFGTINLIQDLVETGES 134
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 135 LLLLGRPGVGKTTALREIARVLADDLHKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAR 194
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG ++N++KNP
Sbjct: 195 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNRLENLIKNP 254
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGDEEA++R QKT+LERK PPTF+ AVEM+ R + +H + T+D
Sbjct: 255 TLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFSMAVEMLERQKWTIHSDVALTID 314
Query: 400 AILAGKLPLFEVRQMDAE--------HHEPLKVTP--------------ILR-------- 429
+L G+ P+ ++R M+ + +P + TP LR
Sbjct: 315 NLLRGRPPVEQLRYMNEQGELQIETVEAQPQERTPQPPPYFSLGLVDDRQLRPRPTGLRS 374
Query: 430 -GSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVY 483
G ++ L N D+ + E + + + + + +R P P PV VY
Sbjct: 375 TGRMKPQAPLHANADQVRDFERLLEQSWQQWEGDD------EPKIRVPGPNGEDLPVYVY 428
Query: 484 TYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFV 543
Y + + L QV ++ L + VT D+ ADA+LA S +K N +R +AK Q+P++
Sbjct: 429 PYGVGRSQLDQVIDILQL--PVAVTKDVHQADAVLALRSHVKGNQKLRQMAKGIQVPIYG 486
Query: 544 IKSNTMAQMVKAVRMILGMESFGTISKLPNKS-TSDIEIEDDAPKRKPTLEEIDALEEVR 602
+KSNT+ Q+ +A++ ILGM+ P+K+ +D+ + R + +E++ALEE R
Sbjct: 487 VKSNTIPQISRALKRILGMDE-------PHKAEAADLRLF----TRSGSNDELEALEEAR 535
Query: 603 LAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
LA+E IVIP G+ VELLPR + Q ELVE Y+L +++ G E N RL+I P
Sbjct: 536 LAVEQIVIPTGQPVELLPRSPHVRKMQHELVEHYRLQSDSFGDEPNRRLRIYP 588
>gi|170079165|ref|YP_001735803.1| ATPase like protein [Synechococcus sp. PCC 7002]
gi|169886834|gb|ACB00548.1| ATPase like protein [Synechococcus sp. PCC 7002]
Length = 591
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 277/590 (46%), Positives = 377/590 (63%), Gaps = 52/590 (8%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+LE L +LP +R L H LIEVVMDLGR P ARF + + ++ + EDL++
Sbjct: 19 DLEKLLTILPDAIRDRLADHPNKNALIEVVMDLGRIPEARFENSTEDLGDRPISREDLQY 78
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++ +VG FS DNR+GI+R+LHRISA+RNR+ ++GLTCR+GRAV G+ +I +LVE G S
Sbjct: 79 SVERVGMFSGDNRAGIERTLHRISAMRNRQGDIVGLTCRIGRAVFGTILMIQELVESGKS 138
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PHS IGRARRMQV
Sbjct: 139 ILLLGRPGVGKTTALREIARVLADDFGKRVVIIDTSNEIAGDGDIPHSAIGRARRMQVAT 198
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE IIIDEIGTELEA AA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 199 PELQHKVMIEAVENHMPEVIIIDEIGTELEAQAARTIAERGVQLVGTAHGNRIENLIKNP 258
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGDEEA+KR+ QKT+LERK PPTF AVEM+ R VH + T+D
Sbjct: 259 TLSDLVGGIQAVTLGDEEARKRRSQKTVLERKAPPTFDVAVEMLERQRWVVHSDVSITID 318
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVT-----PILRGSYPEESELTINEDKSAEMESDEDS 454
+L G PL EVR +D + + +K+T P+ ++ ++++ + + +
Sbjct: 319 TLLRGHQPLLEVRTVDDQGN--VKITEEMEHPVEIPNWNPQTKMAPEPSRPRGLRASGKM 376
Query: 455 EDEDYASNQFK--------------------NRSIKRSVRKPSP-----PVCVYTYRILE 489
+ S + K + + VR P P PV VY Y +
Sbjct: 377 APLPFGSQKKKLVSPRSNALDPLIDQSWIARDPQQQEKVRVPGPNGEDYPVYVYPYGVGR 436
Query: 490 ADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTM 549
+ L QV +++ L I++T D+ ADA+LA S++K + +R +A+ +P+ +KSNT+
Sbjct: 437 SQLEQVIEILRL--PIELTKDLEGADAVLALRSQLKNHSKLRQIAQTCHVPIHAVKSNTI 494
Query: 550 AQMVKAVRMILGME----SFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAI 605
Q+ + +R IL ++ T +L +S SD +EIDALEE RLA+
Sbjct: 495 PQITRGLRRILNLDDPQNQEPTDLRLFAQSNSD--------------DEIDALEEARLAV 540
Query: 606 EYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
E IVIP G+ VELLPR ++I Q EL+E Y+L + + G E N RL+I P
Sbjct: 541 EQIVIPQGQPVELLPRSAKIRKMQHELIEHYRLQSSSFGEEPNRRLRIFP 590
>gi|428768784|ref|YP_007160574.1| single-stranded nucleic acid binding R3H domain-containing protein
[Cyanobacterium aponinum PCC 10605]
gi|428683063|gb|AFZ52530.1| single-stranded nucleic acid binding R3H domain-containing protein
[Cyanobacterium aponinum PCC 10605]
Length = 582
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 271/583 (46%), Positives = 381/583 (65%), Gaps = 43/583 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ LE+LPS +++ L H + LIE+V+DLGRKP ARF +S+Q++ ED+ H
Sbjct: 15 DLDKLLEILPSNIKQPLENHPQKNSLIEIVLDLGRKPEARFSHRTEYLSDQLITREDITH 74
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+++VG+FS DNR+GI+R+LHRISAIRNR+ +IGLTCR+GRAV G+ +I +LVE G S
Sbjct: 75 CVARVGNFSADNRAGIERTLHRISAIRNRQGDIIGLTCRIGRAVFGTILMIKELVESGQS 134
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGDVPH IGRARRMQV
Sbjct: 135 ILLLGRPGVGKTTALREIARVLADELEKRVVIIDTSNEIAGDGDVPHPAIGRARRMQVAR 194
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE IIIDEIGTELEALAA TIA+RGVQLVGTAHG ++N++KNP
Sbjct: 195 PELQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNHLENLIKNP 254
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI+SVTLGDEEA++R QKT+LERK PPTF AVEM R + VH + TVD
Sbjct: 255 TLSDLIGGIQSVTLGDEEARRRGSQKTVLERKAPPTFEIAVEMWERQKWVVHEDVAQTVD 314
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEM----------- 448
+L GK P+ ++RQ++ E + P S+ +++ N ++
Sbjct: 315 YLLRGKQPIPQLRQVNDEGEVSITRDP----SFSSPQQVSTNPPTLIDIPNKPTGLRAQG 370
Query: 449 -----------ESDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVYTYRILEADL 492
+S + +E A++ ++ + +R P P P+ +Y Y I ++ L
Sbjct: 371 KMTPLPIAPHPQSIHNDFEEMLANSWYQLEKTGQKMRTPGPNGEDFPIYLYPYGIGKSHL 430
Query: 493 LQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQM 552
V ++ L I +T D+ +ADA+LA S++K + + +AK QLP+ IKSN++ +
Sbjct: 431 DHVISILKL--PIVLTKDLDSADAVLALRSQVKHHSKLVQLAKERQLPIKSIKSNSIPHI 488
Query: 553 VKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPG 612
+A++ ++ +E L + + + +D EI+ALEE RLA+E IVIP
Sbjct: 489 SRALKELVSLEDGNEPESLDIRVLTRVGSDD----------EIEALEEARLAVEQIVIPQ 538
Query: 613 GEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
G+ VELLPR +++ Q EL+E Y+L +++ G E N RL+I P
Sbjct: 539 GQPVELLPRSAKVRKMQHELIEHYRLRSDSFGDEPNRRLRIYP 581
>gi|413942920|gb|AFW75569.1| hypothetical protein ZEAMMB73_728588 [Zea mays]
Length = 572
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 248/437 (56%), Positives = 328/437 (75%), Gaps = 13/437 (2%)
Query: 114 RELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAIS--KVGDFSDDN 171
R + H EL L+EVVMDLGR PLARFPSGD+++S++ + +DL+HA S +VGDF DN
Sbjct: 92 RRVETHPELPALVEVVMDLGRPPLARFPSGDFLLSQRPISFDDLRHATSHSQVGDFGADN 151
Query: 172 RSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKT 231
R+GI R+LHRISAIRNRK ++GLTCRVGRAV GSA ++ DLV+ GGS+L+IGPPGVGKT
Sbjct: 152 RAGISRTLHRISAIRNRKGVIVGLTCRVGRAVPGSANLLQDLVKDGGSLLLIGPPGVGKT 211
Query: 232 TLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAV 291
T+IREIARMLADD+ KRV+IVDTSNEIGGDGD+PH GIG ARR+QVPN +MQH V+IEAV
Sbjct: 212 TVIREIARMLADDYKKRVMIVDTSNEIGGDGDIPHPGIGNARRLQVPNQDMQHKVLIEAV 271
Query: 292 ENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESV 351
ENHMP+ I+IDEIGT+LEA+AASTIAQRG+QLV TAHG+TI+N++ NPSL++LVGGI+SV
Sbjct: 272 ENHMPQAIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNPSLEMLVGGIQSV 331
Query: 352 TLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEV 411
TLGDEEA +R VQKT+LERKGP TFTCA E++S+ E RVH L+ATVDA+LAGKLP FE+
Sbjct: 332 TLGDEEANRRGVQKTVLERKGPSTFTCAAEIVSKKELRVHRSLEATVDALLAGKLPNFEI 391
Query: 412 RQMDAEHHEPLKVTPILRGSYPEESELTI---NEDKSAEMESDEDSEDEDYASNQFKNRS 468
R++ ++ ++ + + E+S L I E S + + S D ++ + +
Sbjct: 392 RKLGSK--GSMQEVSVQK----EQSHLGIYDATEFGSDSLRNARRSLDSAFSLDSAEGHI 445
Query: 469 IKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNP 528
++ S +Y Y I E+ LQ + L+D + +T +I ADA++A S++K+N
Sbjct: 446 VRSDGADSS--FNLYAYGISESTALQAIHQLELDDSVTLTYNISEADAVIALHSKLKKNY 503
Query: 529 WIRGVAKFHQLPVFVIK 545
I+ V K +PVF++K
Sbjct: 504 QIQAVLKSQDIPVFLVK 520
>gi|56750908|ref|YP_171609.1| hypothetical protein syc0899_c [Synechococcus elongatus PCC 6301]
gi|56685867|dbj|BAD79089.1| hypothetical protein YCF45 [Synechococcus elongatus PCC 6301]
Length = 588
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 282/591 (47%), Positives = 372/591 (62%), Gaps = 35/591 (5%)
Query: 86 SPNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDW 145
+P A+ L+ LE+LP ++R +L H + L+EVV+DLGR P ARFP G
Sbjct: 11 TPELAAVREKTVVDNLDELLEILPPQLRDQLLRHPQKDRLVEVVLDLGRFPEARFPEGAE 70
Query: 146 VISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAG 205
+SE V EDL + ++VGDF DNR+GI+R+LHRI AIRNRK +VIGLTCRVGRAV G
Sbjct: 71 YLSETPVSREDLAYCAARVGDFGADNRAGIERTLHRIGAIRNRKGEVIGLTCRVGRAVFG 130
Query: 206 SAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
+ +I DLVE G S+L +G P VGKTT +RE+AR+LADD +KRVVI+DTSNEI GDGD+P
Sbjct: 131 TVGMIRDLVETGQSLLFLGRPDVGKTTALREVARVLADDLLKRVVIIDTSNEIAGDGDIP 190
Query: 266 HSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVG 325
H IGRARR+QV +QH VMIEAVENHMPE IIIDEIGTELEALAA TIA+RGVQLVG
Sbjct: 191 HPAIGRARRLQVARPELQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVG 250
Query: 326 TAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISR 385
TAHG I+N++KNP+L LVGGI+SVTLGD+EA++R QKT+LERK PPTF AVEM+ R
Sbjct: 251 TAHGNQIENLIKNPTLSDLVGGIQSVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMLER 310
Query: 386 TECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTIN---- 441
VH + TV +L P +VR + + + + P + + + + +T
Sbjct: 311 YRWVVHEDVANTVGLLLRQGQPNPQVRTLSEDGR--VLIAPAFKDAPKQPASVTQQTWSH 368
Query: 442 -EDK----SAEME----------SDEDSEDEDYASNQFKNRSIKRSV--RKPSPPVCVYT 484
D+ S M + ED D + A Q + R V P+ VY
Sbjct: 369 TSDRGWRSSGRMRPLPPVLDVPTTREDLRDPEVAFEQALATDVARPVGPNGEELPLHVYP 428
Query: 485 YRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVI 544
Y + L QV + L + +T D+ AD +LA + ++K +R VA+ H +P+ VI
Sbjct: 429 YAVSRHYLEQVIDTLQL--PVLLTKDLADADVVLALAGQLKGQSKLRHVARNHHVPIHVI 486
Query: 545 KSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLA 604
KSNTM Q+V+A+R +L E +L T ++E+ A K +EI+ALEE RLA
Sbjct: 487 KSNTMPQIVRALRRLLNQE------QLDEPETVNLELFTKAGKN----DEIEALEEARLA 536
Query: 605 IEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
+E IV+P G+ VELLPR + + Q ELVE Y+L + + G E N RL+I P
Sbjct: 537 VEQIVLPKGQPVELLPRSAIVRKMQHELVEHYRLKSASFGEEPNRRLRIFP 587
>gi|254409994|ref|ZP_05023774.1| R3H domain protein [Coleofasciculus chthonoplastes PCC 7420]
gi|196183030|gb|EDX78014.1| R3H domain protein [Coleofasciculus chthonoplastes PCC 7420]
Length = 598
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 281/606 (46%), Positives = 381/606 (62%), Gaps = 43/606 (7%)
Query: 77 PPRNGSVSDSPNSASTSRSGADI--ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGR 134
P S+S+ S +T+ +G I +L+ L +LP +R+ L H +LIEVVMDLGR
Sbjct: 8 PSHPQSLSNQALSNTTNLAGMQITEDLQKLLAILPEDIRQILEQHPHRDNLIEVVMDLGR 67
Query: 135 KPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIG 194
P RFPSG +SE V E L + + +VG FS DNR+G++++LHRISAIRNR +IG
Sbjct: 68 FPEVRFPSGAEYLSETPVTAEQLNYCVERVGHFSGDNRAGLEKTLHRISAIRNRPGDIIG 127
Query: 195 LTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254
LTCRVGRAV G+ +I DLVE G SIL++G PGVGKTT +REIAR+LADD KRVVI+DT
Sbjct: 128 LTCRVGRAVFGTIGLIHDLVERGQSILMLGRPGVGKTTALREIARVLADDLQKRVVIIDT 187
Query: 255 SNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAS 314
SNEI GDGD+PH IGRARRMQV +QH VMIEAVENH PE I+IDEIGTELEALAA
Sbjct: 188 SNEIAGDGDIPHPAIGRARRMQVSRPELQHQVMIEAVENHTPEVIVIDEIGTELEALAAR 247
Query: 315 TIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPP 374
TIA+RGVQLVGTAHG I+N++KNP+L LVGGI++VTLGD+EA++R QKT+LERK PP
Sbjct: 248 TIAERGVQLVGTAHGNQIENLIKNPTLSDLVGGIQAVTLGDDEARRRGSQKTVLERKAPP 307
Query: 375 TFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEH------HEPLKVTPIL 428
TF AVEM+ R VH + TVDA+L G+ P ++R +D ++ P P+
Sbjct: 308 TFEIAVEMLERQRWVVHESVADTVDALLRGRKPNPQMRTVDDQNKVIITREFPDAPAPLE 367
Query: 429 RGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP---------- 478
R + S +M+ S A + ++ + S ++P+
Sbjct: 368 RRTQSGLVAKPSGWRSSGQMQPLSRSSSPASAQTSYFDQLLHDSWQQPNSVGEVIDTIGP 427
Query: 479 -----PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGV 533
P+ VY Y + + QV +V+ L + +T D+ +ADAIL S +K + +R +
Sbjct: 428 NGEDLPLHVYPYGVSRHQIEQVIRVLNL--PVVLTKDMDSADAILGLRSHVKSHSKLRSI 485
Query: 534 AKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTIS----KLPNKSTSDIEIEDDAPKRK 589
A+ Q+P+ +K++T+ Q+ +A+R +L M+ G +L +S SD
Sbjct: 486 ARSRQIPIHAVKASTVPQVSRALRRMLDMDDPGVPDAADLRLFTQSGSD----------- 534
Query: 590 PTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNP 649
+EI+ALEE RLA+E IVIP G+ VELLPR ++ Q ELVE Y+L +++ G E N
Sbjct: 535 ---DEIEALEEARLAVEQIVIPNGQPVELLPRSPKVRKMQHELVEHYRLKSDSFGDEPNR 591
Query: 650 RLQILP 655
RL+I P
Sbjct: 592 RLRIYP 597
>gi|434396885|ref|YP_007130889.1| single-stranded nucleic acid binding R3H domain-containing protein
[Stanieria cyanosphaera PCC 7437]
gi|428267982|gb|AFZ33923.1| single-stranded nucleic acid binding R3H domain-containing protein
[Stanieria cyanosphaera PCC 7437]
Length = 584
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 276/580 (47%), Positives = 371/580 (63%), Gaps = 38/580 (6%)
Query: 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHA 160
L+ L + P +R +L H + +LIEVVMDLGR P RF S + + V EDL+H
Sbjct: 17 LDELLSIFPEPIRLKLIEHPQKDNLIEVVMDLGRLPEGRFASEASYLGQTPVSKEDLQHC 76
Query: 161 ISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI 220
I +VG FS DNR+GI+R+LHRISAIRNR +IGLTCR+GRAV G+ +I +L+E G S+
Sbjct: 77 IERVGIFSSDNRAGIERTLHRISAIRNRAGDIIGLTCRIGRAVFGTIIMIRELIETGQSV 136
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNV 280
L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 137 LLLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVSRP 196
Query: 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPS 340
+QH VMIEAVENHMPE I+IDEIGTELE+LAA TIA+RGVQLVGTAHG TI+N++KNP+
Sbjct: 197 ELQHQVMIEAVENHMPEVIVIDEIGTELESLAARTIAERGVQLVGTAHGNTIENLIKNPT 256
Query: 341 LQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDA 400
L L+GGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 257 LSDLIGGIQAVTLGDDEARRRGSQKTVLERKAPPTFAVAVEMLERQRWVVHEDVAQTVDN 316
Query: 401 ILAGKLPLFEVRQMDAE------HHEPLK------------VTPIL-RGSYPEESELT-I 440
+L G P ++R +D H EP + TP+ G + +T +
Sbjct: 317 LLRGIEPTTQIRTVDDSGEISIIHEEPTQSNNNYLAKTVSLATPLRPSGGWRASGRMTPV 376
Query: 441 NEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVYTYRILEADLLQV 495
+ S + + + D E S Q + I VR P P PV +Y Y + + L QV
Sbjct: 377 SSLSSKQQKVNSDFEQMLEQSWQTQE-PISNKVRTPGPNGEDWPVYLYPYGVGRSQLEQV 435
Query: 496 AKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKA 555
V+ L I +T D+ AD ++A S++K + +R + K Q+P++ +KSNT+ Q+ +
Sbjct: 436 IDVLNL--PIVLTKDLENADVVVALRSQIKHHSKLRQLVKHRQIPIYGVKSNTIPQITRV 493
Query: 556 VRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEA 615
+R +L + LP +D+ + A +EI+ALEE RLA+E IVIP G+
Sbjct: 494 LRQLLNFDD----PNLP--EATDLRLFSQAGSD----DEIEALEEARLAVEQIVIPKGQP 543
Query: 616 VELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
VELLPR +++ Q ELVE Y+L +++ G E N RL+I P
Sbjct: 544 VELLPRSAKVRKMQHELVEHYRLQSDSFGEEPNRRLRIYP 583
>gi|428205270|ref|YP_007089623.1| single-stranded nucleic acid binding R3H domain-containing protein
[Chroococcidiopsis thermalis PCC 7203]
gi|428007191|gb|AFY85754.1| single-stranded nucleic acid binding R3H domain-containing protein
[Chroococcidiopsis thermalis PCC 7203]
Length = 587
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 276/597 (46%), Positives = 380/597 (63%), Gaps = 57/597 (9%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L++LP ++ L H + LIEVVMDLGR+P ARFP ++E + H+ +++
Sbjct: 6 DLQKLLDILPLDIKNVLEQHPQRDSLIEVVMDLGRRPEARFPDRAEYLAESGISHDQIRY 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+I +VG F DNR+G+ ++LHRISAIRNR +IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 SIQRVGHFGGDNRAGLAQTLHRISAIRNRAGDIIGLTCRVGRAVFGTIGMIHDLVETGQS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGDVPH IGRARRMQV
Sbjct: 126 ILLLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDVPHPAIGRARRMQVSR 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PEFQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI+SVTLGD+EA++R+ QKT+LERK PPTF AVEM+ R +H + TVD
Sbjct: 246 TLSDLVGGIQSVTLGDDEARRRRTQKTVLERKAPPTFEIAVEMLERQRWTIHESVADTVD 305
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYP---------------------EESEL 438
A+L G++P ++R +DA+ KVT + + P EES+L
Sbjct: 306 ALLRGRIPNPQLRTVDADG----KVTIVRQSPTPLRGVGQDGFGRGYEVGNPRQEEESKL 361
Query: 439 T-------------------INEDKSAEMESDEDSEDEDYASNQFK-NRSIKRSVRKPSP 478
+ + E + E E + ++ S++F + ++
Sbjct: 362 SPTMTVGGWRSTGRMIPLAAVPEPATREQEFERLLDESLARSDRFNSDLAVNAGPNGEDL 421
Query: 479 PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQ 538
P+ +Y Y + L Q +V+ L + +T DI +ADAILA S +K +R VAK
Sbjct: 422 PLHIYPYGVSRHQLEQAIQVLSL--PVVLTKDIDSADAILALRSHVKNQSKLRHVAKARH 479
Query: 539 LPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDAL 598
+P+ +KSNT+ Q+++ +R +L M+ +P++ + I++ + +E+DAL
Sbjct: 480 VPIHTLKSNTIPQIIRTLRRLLDMDE----PVVPDERELSLFIQNGSE------DELDAL 529
Query: 599 EEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
EE RLA+E IVIP G+ VELLPR +++ Q ELVE Y+L +++ G E N RL+I P
Sbjct: 530 EEARLAVEQIVIPKGQPVELLPRSAKVRKMQHELVEHYRLKSDSFGDEPNRRLRIYP 586
>gi|119484836|ref|ZP_01619318.1| Single-stranded nucleic acid binding R3H [Lyngbya sp. PCC 8106]
gi|119457654|gb|EAW38778.1| Single-stranded nucleic acid binding R3H [Lyngbya sp. PCC 8106]
Length = 582
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 281/596 (47%), Positives = 369/596 (61%), Gaps = 60/596 (10%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L ++P +RR + +H + LIE+V+DLGR P ARFP G IS+ V EDL H
Sbjct: 6 DLNRLLNIVPEEIRRNVELHPQRNSLIEIVLDLGRCPEARFPLGAEYISQTAVSWEDLDH 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
IS++G+FS DNR+GI+R+LHRISAIRNR +VIGLTCRVGRAV G +I DLVE G S
Sbjct: 66 CISQIGEFSGDNRAGIERTLHRISAIRNRTGKVIGLTCRVGRAVFGKVGMIRDLVETGQS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADELSKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAR 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEA+AA TIA+RGVQL+GTAHG I+N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEVIVIDEIGTELEAIAARTIAERGVQLIGTAHGNRIENLMKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R VH + +T+D
Sbjct: 246 TLADLIGGIQAVTLGDEEARRRGSQKTVLERKAPPTFEIAIEMLERDRWVVHESVASTID 305
Query: 400 AILAGKLPLFEVRQMD--------AEHHEPLKVTPILRGSYPEESELTINEDKSAEMES- 450
++L G P +VR MD E + P R P+ KS E+ +
Sbjct: 306 SLLRGMQPTLQVRTMDEAGEVSMVEERYNSPSAAPPTRTLSPQVM-------KSVEVSAP 358
Query: 451 ---------------DEDSEDEDYASNQFKNRSIKRSVR--------KPSP-------PV 480
E S E+ Q + S +R P+ P+
Sbjct: 359 GLTGLRGSGKMIPIPPEKSTPENKYFEQLLDASFTTGLRGIVGGNAEHPAVGPNGEDLPL 418
Query: 481 CVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLP 540
+Y Y I L QV + + L + +T DI +AD +LA S ++ +R +AK Q+P
Sbjct: 419 HIYPYGIARHQLDQVIRSLRL--PVALTKDIDSADVVLALRSHIRNQSKLRHMAKTRQVP 476
Query: 541 VFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAP-KRKPTLEEIDALE 599
+ +KS + Q+ +A+R +L ME PN E+ D A R + +EI+ALE
Sbjct: 477 IHTVKSGSAPQVARALRRLLNMED-------PNAP----EVPDLALFARSGSEDEIEALE 525
Query: 600 EVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
E RLA+E IVIP G+ VELLPR ++ Q ELVE Y+L + + G E N RL+I P
Sbjct: 526 EARLAVEQIVIPKGQPVELLPRSPQVRKMQHELVEHYRLKSNSFGEEPNRRLRIYP 581
>gi|428213099|ref|YP_007086243.1| hypothetical protein Oscil6304_2716 [Oscillatoria acuminata PCC
6304]
gi|428001480|gb|AFY82323.1| hypothetical protein Oscil6304_2716 [Oscillatoria acuminata PCC
6304]
Length = 615
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 283/597 (47%), Positives = 373/597 (62%), Gaps = 58/597 (9%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L LE+LP +R L H L +LIEVVMDLGR P ARFP+ IS+ V DLK+
Sbjct: 35 DLSQLLEILPETIREHLTNHSSLSNLIEVVMDLGRLPEARFPNKAEYISDIPVTRSDLKY 94
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
AI +VG FS DNR+GI+++LHRISAIRNR ++IGLTCRVGR+V G+ +I DLVE G S
Sbjct: 95 AIERVGHFSGDNRAGIEQTLHRISAIRNRTGEIIGLTCRVGRSVFGTIHMIRDLVESGQS 154
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 155 ILMLGRPGVGKTTALREIARVLADELHKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAA 214
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 215 PEFQHKVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLIKNP 274
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI+SVTLGDEEA++R QKT+LERK PPTF AVEM R VH R+ TVD
Sbjct: 275 TLCDLVGGIQSVTLGDEEARRRGSQKTVLERKAPPTFEIAVEMSERKRWVVHERVAETVD 334
Query: 400 AILAGKLPLFEVR------------QMDAEHHEPLKVTPILR------------------ 429
++L G+ P +VR ++ ++ K T +R
Sbjct: 335 SLLRGRQPDLQVRTVSESGKVTITKELQPQNSTTTKTTAAVRPFGSAGLRASGKMQPLPV 394
Query: 430 GSYPE--ESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP--------- 478
+ PE + E+KS E +E Y ++F + + + SP
Sbjct: 395 QTLPELGRRSQAVPEEKSFEQMLNESL----YPGDRFAS-AADYGFEEISPLAGPNGEDL 449
Query: 479 PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQ 538
P+ VY Y + L QV + + L + VT DI +AD +LA S +K + +R ++K Q
Sbjct: 450 PLHVYPYGVSRHQLDQVIRTLAL--PVVVTKDIDSADVVLAVRSHVKNHSKLRQMSKNRQ 507
Query: 539 LPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDAL 598
+P+F I S+++ ++ ++R +L ++ G+ ++ + S DD EI+AL
Sbjct: 508 VPIFTINSSSVPKIAHSLRRMLHLDE-GSTPEISDVSLFAQSGSDD---------EIEAL 557
Query: 599 EEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
EE RLA+E IVIP G+ VELLPR ++ Q ELVE Y+L + + G E N RL+I P
Sbjct: 558 EEARLAVEQIVIPKGQPVELLPRGGQVRKMQHELVEHYRLKSCSFGDEPNRRLRIYP 614
>gi|218246053|ref|YP_002371424.1| single-stranded nucleic acid-binding R3H domain-containing protein
[Cyanothece sp. PCC 8801]
gi|257059102|ref|YP_003136990.1| single-stranded nucleic acid binding R3H domain-containing protein
[Cyanothece sp. PCC 8802]
gi|218166531|gb|ACK65268.1| single-stranded nucleic acid binding R3H domain protein [Cyanothece
sp. PCC 8801]
gi|256589268|gb|ACV00155.1| single-stranded nucleic acid binding R3H domain protein [Cyanothece
sp. PCC 8802]
Length = 602
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 279/593 (47%), Positives = 372/593 (62%), Gaps = 39/593 (6%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
PN R ++ L +LP +R + H + LIEVVMDLGR P ARFP+
Sbjct: 24 PNQTLAQRMQITDDIGKLLAILPVNIREHIETHPQKDQLIEVVMDLGRLPEARFPNESVY 83
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ E + EDL+H I +VG FS DNR+GI+R+LHRISAIRNR ++IGLTCR+GRA+ G+
Sbjct: 84 LGETPISEEDLQHCIDRVGHFSGDNRAGIERTLHRISAIRNRTGKIIGLTCRMGRAIFGT 143
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
+I DLVE G S+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH
Sbjct: 144 ITMIQDLVETGKSLLLLGRPGVGKTTALREIARVLADDLHKRVVIIDTSNEIAGDGDIPH 203
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
IGRARRMQV + +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGT
Sbjct: 204 PAIGRARRMQVASPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGT 263
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG I+N++KNP+L LVGGI++VTLGDEEA++R QKT+LERK PPTF A+EM+ R
Sbjct: 264 AHGNRIENLLKNPTLSDLVGGIQAVTLGDEEARRRGSQKTVLERKAPPTFEIAIEMLERQ 323
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVRQMDAEH------HEPLKVTPILRGSYPEESELTI 440
VH + TVD +L P ++R ++ EH EP + P+ G + L
Sbjct: 324 RWVVHEDVSHTVDILLRNGEPNPQLRTIN-EHGEVEISQEPPQKPPM--GLLGHSASLET 380
Query: 441 NEDKSAEMESDEDSEDEDYASNQFKNRSIKR-------------SVRKPSP-----PVCV 482
+ + S S + + + R VR P P PV V
Sbjct: 381 VDRPTGWRASGRMSPVAPFGTQKGTVSEFDRLLDESWHQPESSEKVRIPGPNGEDWPVYV 440
Query: 483 YTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVF 542
Y Y I + + QV +++ L I +T D+ AD ++A S +K + +R +AK Q+P+
Sbjct: 441 YPYGIGRSQIEQVIEILNL--PIVLTKDLSHADVVVALRSHVKNHSKLRQMAKVRQIPIH 498
Query: 543 VIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVR 602
+KSNT+ Q+ + ++ ILGM+ K P T+DI + R +E++ALEE R
Sbjct: 499 GVKSNTIPQITRTLQRILGMDE----PKQPE--TADIRLF----TRGGDDDELEALEEAR 548
Query: 603 LAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
LA+E IV+P G+ VELLPR ++ Q ELVE Y+L +++ G E N RL+I P
Sbjct: 549 LAVEQIVLPKGQPVELLPRSPKVRKMQHELVEHYRLQSDSFGEEPNRRLRIYP 601
>gi|428224232|ref|YP_007108329.1| single-stranded nucleic acid binding R3H domain-containing protein
[Geitlerinema sp. PCC 7407]
gi|427984133|gb|AFY65277.1| single-stranded nucleic acid binding R3H domain-containing protein
[Geitlerinema sp. PCC 7407]
Length = 605
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 276/597 (46%), Positives = 369/597 (61%), Gaps = 37/597 (6%)
Query: 84 SDSPNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSG 143
S SP + + + +L L +LP +++ L H + L+EVV+DLGR+P ARFP
Sbjct: 20 SVSPETMTQAPGQPSSDLPKLLAILPVELQQRLDQHPQRDKLVEVVLDLGRRPEARFPGK 79
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
+S+ V ED+ H ++++ FS DNR+GI+R+LHRISAIRNR VIGLTCRVGRA+
Sbjct: 80 AEYLSDLPVSLEDIDHCLARISSFSGDNRAGIERTLHRISAIRNRSGDVIGLTCRVGRAI 139
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGD 263
G+ +I DLVE G SIL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD
Sbjct: 140 FGTIGMIRDLVETGQSILLLGRPGVGKTTALREIARVLADDLEKRVVIIDTSNEIAGDGD 199
Query: 264 VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQL 323
+PH IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQL
Sbjct: 200 IPHPAIGRARRMQVARPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQL 259
Query: 324 VGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMI 383
VGTAHG I N++KNP+L LVGGI+SVTLGD+EA++R QKT+LERK PPTF AVEM+
Sbjct: 260 VGTAHGNQIANLIKNPTLSDLVGGIQSVTLGDDEARRRGSQKTVLERKAPPTFEIAVEML 319
Query: 384 SRTECRVHHRLDATVDAILAGKLPLFEVRQMDA--------EHHEPLKVTPILRG---SY 432
R VH + TVD +L G+ P ++R + E P +P RG +
Sbjct: 320 ERERWVVHENVADTVDQLLRGRQPNPQIRTVSEGGKVTITRELSRPEPESPPSRGGRAGW 379
Query: 433 PEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSI---------KRSVRKPSP----- 478
++ ++ + E+S E + RS R R P P
Sbjct: 380 RSSGQMVPPPPQARREATREESYFEQLLNESLPPRSRLDQSLLEEGDRPERIPGPNGEEL 439
Query: 479 PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQ 538
P+ +Y Y + L QV + + L + T D+ ADAILA S +K + +R +A+
Sbjct: 440 PLYIYPYAVSRQHLEQVIQTLNL--PVVPTKDLDGADAILALRSHIKNHAKLRHLARSRH 497
Query: 539 LPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDAL 598
+P+ +IKSNT+ Q+ + +R +L M+ N D+ + +K + +E+DAL
Sbjct: 498 IPIHIIKSNTVPQIARGLRRMLNMDDPS------NPEAVDLRLF----TQKGSDDELDAL 547
Query: 599 EEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
EE RLA+E IV+P G+ VELLPR + + Q ELVE Y L + + G E N RL+I P
Sbjct: 548 EEARLAVEQIVLPKGQPVELLPRSAAVRKMQHELVEHYHLKSTSFGEEPNRRLRIYP 604
>gi|443321273|ref|ZP_21050332.1| hypothetical protein GLO73106DRAFT_00025300 [Gloeocapsa sp. PCC
73106]
gi|442789018|gb|ELR98692.1| hypothetical protein GLO73106DRAFT_00025300 [Gloeocapsa sp. PCC
73106]
Length = 571
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 263/575 (45%), Positives = 370/575 (64%), Gaps = 38/575 (6%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ LE+LP+ +R + H + L+EVVMDLGR P ARF G + +Q + DL H
Sbjct: 15 DLDKLLEILPNSIRESIEQHPQKNQLVEVVMDLGRIPEARFSDGTADLGDQPMTKADLDH 74
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG FS DNR+GI+R+LHRISA+RNR ++IGLTCR+GRA+ G+ +I +LVE G S
Sbjct: 75 CIQRVGHFSGDNRAGIERTLHRISAMRNRGGEIIGLTCRIGRAIFGTITMIRELVESGQS 134
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 135 ILLLGRPGVGKTTALREIARVLADDLHKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVSR 194
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG ++N++KNP
Sbjct: 195 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNRLENLIKNP 254
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF A+EM+ + +H + T+D
Sbjct: 255 TLSDLVGGIQAVTLGDDEARRRNSQKTVLERKAPPTFAIAIEMLEKQRWVIHEDVAQTID 314
Query: 400 AILAGKLPLFEVRQMDAEHH-----EP--------LKVTPILRGSYPEESELTINEDKSA 446
A+L G ++R ++ + + EP L+ +P+ + +T
Sbjct: 315 ALLRGYATPQQIRTVNGQGNVEITEEPGYTTNQVNLRESPLKPTGWRASGRMT------- 367
Query: 447 EMESDEDSEDEDYASNQFKNRSIK-RSVRKPSP-----PVCVYTYRILEADLLQVAKVMG 500
+ S+E + + ++ + + +R P P PV +Y Y I + L Q+ ++
Sbjct: 368 PIPSEESQQFDTLLEQSWQQKEAQTNKIRVPGPSGEDWPVYLYPYGIARSQLEQIINILN 427
Query: 501 LEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMIL 560
L + +T D ADA+LA S++K N +R +AK +Q+P++ IKSN++ Q+ +++ +L
Sbjct: 428 L--PVVLTKDFENADAVLALRSQVKTNNKLRQMAKNYQIPIYGIKSNSIPQISYSLKQML 485
Query: 561 GMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLP 620
+E + D+ + A +EI+ALEE RLA+E IVIP + VELLP
Sbjct: 486 NLEESQS------SEAEDLRLFTQAGND----DEIEALEEARLAVEQIVIPRQQPVELLP 535
Query: 621 RRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
R ++ Q ELVE Y L +++ G E N RL+I P
Sbjct: 536 RSPKVRKMQHELVEHYHLQSDSFGEEPNRRLRIYP 570
>gi|172037264|ref|YP_001803765.1| hypothetical protein cce_2349 [Cyanothece sp. ATCC 51142]
gi|354553853|ref|ZP_08973159.1| single-stranded nucleic acid binding R3H domain-containing protein
[Cyanothece sp. ATCC 51472]
gi|171698718|gb|ACB51699.1| unknown [Cyanothece sp. ATCC 51142]
gi|353554570|gb|EHC23960.1| single-stranded nucleic acid binding R3H domain-containing protein
[Cyanothece sp. ATCC 51472]
Length = 604
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 283/614 (46%), Positives = 384/614 (62%), Gaps = 48/614 (7%)
Query: 73 SDWAPPRNGSVSDSPNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDL 132
+++ P + +V P A + R +L L++LPS +R ++ H L+EVVMDL
Sbjct: 7 NNFLNPSSITVPSIPKKALSQRMQITDDLSKLLDILPSSIRNQIKDHPNCDRLVEVVMDL 66
Query: 133 GRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQV 192
GR P ARFP + E V DL+++I +VG FS DNR+GI+R+LHRISAIRNR +
Sbjct: 67 GRLPEARFPGEAIYLGENPVSASDLQYSIQRVGIFSGDNRAGIERTLHRISAIRNRTGDI 126
Query: 193 IGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252
IGLTCRVGRAV G+ +I DLVE G S+L++G PGVGKTT +REIAR+LADD KRVVI+
Sbjct: 127 IGLTCRVGRAVFGTISMIRDLVETGQSLLLLGRPGVGKTTALREIARVLADDFDKRVVII 186
Query: 253 DTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALA 312
DTSNEI GDGD+PH IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALA
Sbjct: 187 DTSNEIAGDGDIPHPAIGRARRMQVATPELQHKVMIEAVENHMPEVIVIDEIGTELEALA 246
Query: 313 ASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKG 372
A TIA+RGVQLVGTAHG I+N++KNP+L LVGGI++VTLGD+EA++R QKT+LERK
Sbjct: 247 ARTIAERGVQLVGTAHGNRIENLMKNPTLSDLVGGIQAVTLGDDEARRRGSQKTVLERKA 306
Query: 373 PPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAE------HHEPLKVTP 426
PPTF A+EM+ R + VH + T+D +L P + R +D EP + TP
Sbjct: 307 PPTFEIAIEMLERQKWVVHEDVAYTIDILLRNGEPNPQTRTVDENGEVQITQEEPDQ-TP 365
Query: 427 ----ILRGS---------YPEESELT----INEDKSAEMESDEDSE---DEDYASNQFKN 466
RG+ + ++T K ++ S + + D + + K
Sbjct: 366 NPASFGRGTGQMIQQPKGWRASGKMTPVSPFGSKKGNKLSSASEFDRLLDASWCQPEPKG 425
Query: 467 RSIKRSVRKPSP-----PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASS 521
VR P P PV +Y Y I + L QV +V+ L I +T D+ +AD ++A
Sbjct: 426 ----DKVRVPGPNGEDFPVYIYPYGIGRSQLEQVIEVLNL--PIVLTKDLDSADVVVALR 479
Query: 522 SEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEI 581
S +K +R VAK Q+P+ +KSNT+ Q+ + ++ +LGM+ +K P T+D+ +
Sbjct: 480 SHLKNQSKLRQVAKARQVPIHGVKSNTIPQITRTLQRLLGMDE----AKTP--ETADLRL 533
Query: 582 EDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAE 641
R +E++ALEE RLA+E IV+P G+ VELLPR ++ Q ELVE Y+L ++
Sbjct: 534 F----TRGSNDDELEALEEARLAVEQIVLPKGQPVELLPRSPKVRKMQHELVEHYRLQSD 589
Query: 642 NSGTELNPRLQILP 655
+ G E N RL+I P
Sbjct: 590 SFGEEPNRRLRIYP 603
>gi|22298282|ref|NP_681529.1| hypothetical protein tlr0740 [Thermosynechococcus elongatus BP-1]
gi|22294461|dbj|BAC08291.1| ycf45 [Thermosynechococcus elongatus BP-1]
Length = 567
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 273/570 (47%), Positives = 369/570 (64%), Gaps = 34/570 (5%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L +LP + + L H + +L+E+V+DLGR P ARF ++E V E L++
Sbjct: 14 DLDQLLAILPPPLGQSLTDHPQREELLEIVLDLGRLPEARFIHSTQYLAETPVSREMLQY 73
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
A+ +VG+FS DNR+GI+R+LHRISA+RNR+ +IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 74 AVDRVGEFSGDNRAGIERTLHRISALRNRQGTIIGLTCRVGRAVFGTIGMIRDLVESGQS 133
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGD+PH IG+ARRMQV
Sbjct: 134 ILLLGRPGVGKTTALREIARVLADELHKRVVIIDTSNEIAGDGDIPHPAIGKARRMQVAR 193
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMP+ I+IDEIGTELEALAA TIA+RGVQL+GTAHG I+N++KNP
Sbjct: 194 PELQHQVMIEAVENHMPQVIVIDEIGTELEALAARTIAERGVQLIGTAHGNQIENLMKNP 253
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI+SVTLGDEEA++R QK++LERK PPTF AVEM+ R VH + A+VD
Sbjct: 254 TLADLVGGIQSVTLGDEEARRRGTQKSVLERKAPPTFQMAVEMLERDRWVVHLDVAASVD 313
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINE-------DKSAEMESDE 452
+L G+ P+ E+R + A+ + ++ P L + +S +M
Sbjct: 314 LLLRGRQPVPEIRSIAADG------SVVISRPEPAPQRLEVKSVPERPSWRESGQMLPVV 367
Query: 453 DSEDEDYASN--QFKNRSIKRSVRKPSP---PVCVYTYRILEADLLQVAKVMGLEDEIDV 507
D+ E +N Q ++ P+ P+ V+ Y + L Q + + L I V
Sbjct: 368 DANKEPLRANFAQLLEATLDAPTVGPNGEELPLHVFPYAVSRHHLEQAVRTLNL--PIIV 425
Query: 508 TDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGT 567
T DI AD IL S +K +R +A H LP+ IK+N+MAQ+V+ +R +LG+E
Sbjct: 426 TKDIDQADVILTLRSHLKGESKLRHLAHIHHLPIHAIKANSMAQIVRGLRHLLGIED--- 482
Query: 568 ISKLPNKSTSDIEIEDDAPKRKPTL--EEIDALEEVRLAIEYIVIPGGEAVELLPRRSEI 625
P+ + S D PT +E++ALEE RLA+E IVIP G+AVELLPR ++I
Sbjct: 483 ----PSPAES-----ADLSLFSPTGSDDELEALEEARLAVEEIVIPKGQAVELLPRSAKI 533
Query: 626 VARQLELVESYQLAAENSGTELNPRLQILP 655
Q EL+E YQL + + G E N RL+I P
Sbjct: 534 RRMQHELIEHYQLTSCSFGEEPNRRLRIYP 563
>gi|434391656|ref|YP_007126603.1| single-stranded nucleic acid binding R3H domain-containing protein
[Gloeocapsa sp. PCC 7428]
gi|428263497|gb|AFZ29443.1| single-stranded nucleic acid binding R3H domain-containing protein
[Gloeocapsa sp. PCC 7428]
Length = 582
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 279/592 (47%), Positives = 379/592 (64%), Gaps = 52/592 (8%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L++LP +R+ L H L+EVVMDLGR P ARFP+ +S+ + E L
Sbjct: 6 DLQKLLDILPLEIRQALEYHPLRDSLVEVVMDLGRLPEARFPNQAEYLSDTPISQEQLNE 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG+F DNR+GI+++LHRISAIRNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 CIQRVGEFGGDNRAGIEKTLHRISAIRNRTGKIIGLTCRVGRAVYGTIGMIRDLVETGRS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGDV H IGRARRMQV
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADELNKRVVIIDTSNEIAGDGDVAHPAIGRARRMQVAR 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEA+AA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEVIVIDEIGTELEAMAARTIAERGVQLVGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R+ QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 246 TLSDLVGGIQAVTLGDDEARRRRSQKTVLERKAPPTFEIAVEMLERQRWVVHESVADTVD 305
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVT-----PI-LRGSYPEESEL---TINEDKSAEMES 450
++L G P +VR +D + KVT P+ +RG E+ ++ ++N + M+S
Sbjct: 306 SLLRGHQPSPQVRTVD----DAGKVTVTRQQPVTIRGITDEKQDIRTASLNTSQPPTMQS 361
Query: 451 D------------EDSEDEDYASNQFKNRSIKRSVRKPSP---------------PVCVY 483
+ S ++D + R + +S+ P P+ +Y
Sbjct: 362 NGWRASGQMLPLPRQSREQDISGVSEFERLLDQSLDPPDRFGYGAQTAGPNGEDLPLHIY 421
Query: 484 TYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFV 543
Y + L QV +V+ L + +T DI +ADAILA S +K + +R +AK Q+P+ +
Sbjct: 422 PYGVSRHQLEQVIQVLNL--PVVLTKDIDSADAILALRSHVKNHSKLRHIAKVRQVPIHM 479
Query: 544 IKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRL 603
IK++T+ Q+ + +R +L M+ T+D E E + + +EIDALEE RL
Sbjct: 480 IKASTIPQITRTLRRMLDMDE---------PLTTD-ERELSLFTQGGSEDEIDALEEARL 529
Query: 604 AIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
A+E IVIP G+ VELLPR ++ Q ELVE Y+L + + G E N RL+I P
Sbjct: 530 AVEQIVIPKGQPVELLPRSPKVRKMQHELVEHYRLKSNSFGEEPNRRLRIYP 581
>gi|113476582|ref|YP_722643.1| single-stranded nucleic acid binding R3H [Trichodesmium erythraeum
IMS101]
gi|110167630|gb|ABG52170.1| single-stranded nucleic acid binding R3H [Trichodesmium erythraeum
IMS101]
Length = 590
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 281/601 (46%), Positives = 369/601 (61%), Gaps = 62/601 (10%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L LE++P ++RR L H+E LIE+VMDLGR P ARFPS ++E V +DL +
Sbjct: 6 DLYRLLEIVPDKIRRPLQEHQERNHLIEIVMDLGRLPEARFPSHVEYLAEIPVSRKDLSY 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++ ++G FS DNR+GI+++LHRISA+RNR +VIGLTCRVGRAV G+ +I +LVE G S
Sbjct: 66 SMERIGTFSSDNRAGIEQTLHRISAMRNRTGEVIGLTCRVGRAVFGTIAMIRELVETGRS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGDVPHS IGRARRMQV +
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADELEKRVVIIDTSNEIAGDGDVPHSAIGRARRMQVAS 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH VMIEAVENH PE I+IDEIGTELEALAA TIA+RGVQLVGTAHG I+N+VKNP
Sbjct: 186 PEQQHRVMIEAVENHTPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLVKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R VH ++ TVD
Sbjct: 246 TLSDLIGGIQAVTLGDDEARRRSSQKTVLERKAPPTFEIAVEMLERHRWVVHEQVADTVD 305
Query: 400 AILAGKLPLFEVRQMDAEHHEPLK----VTP---------------------ILRGSYPE 434
A+L GK P EVR MD +K +P I GS+ +
Sbjct: 306 ALLRGKKPNPEVRTMDDNGEVKIKREFNSSPGFGSGVNRNAGRLLEQSGEMLISGGSFRD 365
Query: 435 ESE-------------LTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSV--RKPSPP 479
L +E KS E DE S+ +R + P
Sbjct: 366 SGYMMPLSNTGKISQPLEFSEAKSFEQLLDESLSGNGMFSHDTGDRWDNKDAGPNGEDLP 425
Query: 480 VCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQL 539
+ +Y Y I + QV +GL + +T DI +AD +LA S ++ +R AK +
Sbjct: 426 LHIYPYAIPRHQMEQVITTLGL--PVVLTKDIDSADVVLALRSHTRKQSKLRHAAKTRHV 483
Query: 540 PVFVIKSNTMAQMVKAVRMILGME-----SFGTISKLPNKSTSDIEIEDDAPKRKPTLEE 594
P+ VIK++ + Q+ KA+R +L ME F ++ ++ D E
Sbjct: 484 PIHVIKNSGLPQIAKALRRLLDMEDPATPEFADLNLFAASASED---------------E 528
Query: 595 IDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQIL 654
++ALEE RLA+E IVIP G+ VELLPR ++ Q ELVE Y+L + + G E N RL+I
Sbjct: 529 MEALEETRLAVEQIVIPNGQPVELLPRSPKVRKMQHELVEHYRLKSASFGDEPNRRLRIY 588
Query: 655 P 655
P
Sbjct: 589 P 589
>gi|126659203|ref|ZP_01730341.1| hypothetical protein CY0110_04488 [Cyanothece sp. CCY0110]
gi|126619508|gb|EAZ90239.1| hypothetical protein CY0110_04488 [Cyanothece sp. CCY0110]
Length = 576
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 281/585 (48%), Positives = 372/585 (63%), Gaps = 44/585 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L++LPS +R ++ H L+EVVMDLGR P ARFP + + V DL++
Sbjct: 6 DLSKLLDILPSSIRNQIKDHPNCDRLVEVVMDLGRLPEARFPGEAIYLGDTPVSASDLQY 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+I +VG FS DNR+GI+R+LHRISAIRNR +IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 SIQRVGIFSGDNRAGIERTLHRISAIRNRTGDIIGLTCRVGRAVFGTISMIRDLVETGQS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 126 LLLLGRPGVGKTTALREIARVLADDFDKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAA 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PELQHKVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLMKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF A+EM+ R + VH + T+D
Sbjct: 246 TLSDLVGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAIEMLERQKWVVHDDVAYTID 305
Query: 400 AILAGKLPLFEVRQMDAE------HHEPLKVTPI-----------------LRGSYPEES 436
+L P +VR +D EP +TP R S
Sbjct: 306 ILLRNGQPNPQVRTVDENGNVQITQEEP-DLTPNPASFGRGMGDMIQQPKGWRASGKMTP 364
Query: 437 ELTINEDKSAEMES-DEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVYTYRILEA 490
T K ++ S E D + +Q + + K VR P P PV +Y Y I +
Sbjct: 365 VATFGSKKGNKLSSVSEFDRLLDASWSQPEPKGDK--VRVPGPNGEDFPVYIYPYGIGRS 422
Query: 491 DLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMA 550
L QV +V+ L I +T D+ +AD ++A S +K +R VAK Q+P+ IKSNT+
Sbjct: 423 QLEQVIEVLNL--PIVLTKDLDSADVVVALRSHLKNQSKLRQVAKARQVPIHGIKSNTIP 480
Query: 551 QMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVI 610
Q+ + ++ +LGM+ +K P T+D+ + R +E++ALEE RLA+E IV+
Sbjct: 481 QITRTLQRLLGMDE----AKTP--ETADLRLF----TRGSNDDELEALEEARLAVEQIVL 530
Query: 611 PGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
P G+ VELLPR ++ Q ELVE Y+L +++ G E N RL+I P
Sbjct: 531 PKGQPVELLPRSPKVRKMQHELVEHYRLQSDSFGEEPNRRLRIYP 575
>gi|434386487|ref|YP_007097098.1| hypothetical protein Cha6605_2518 [Chamaesiphon minutus PCC 6605]
gi|428017477|gb|AFY93571.1| hypothetical protein Cha6605_2518 [Chamaesiphon minutus PCC 6605]
Length = 588
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 274/586 (46%), Positives = 373/586 (63%), Gaps = 43/586 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L +LP +R L H +L LIEVVMDLGR P ARF G +S+ V D++H
Sbjct: 15 DLSQLLAVLPESIRIALENHPKLSVLIEVVMDLGRYPEARFADGAEYLSDVAVTRADIQH 74
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+ ++G FS DNR+GI+R+LHRIS +RNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 75 CVDRLGLFSGDNRAGIERTLHRISCMRNRTDEIIGLTCRVGRAVYGTINMIRDLVETGKS 134
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGD+PHS IGRARRMQV
Sbjct: 135 ILMLGRPGVGKTTALREIARVLADELGKRVVIIDTSNEIAGDGDIPHSAIGRARRMQVAR 194
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG ++N++KNP
Sbjct: 195 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNRLENLLKNP 254
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI++VTLGDEEA++R QKT+LERK PPTF AVEM R VH + VD
Sbjct: 255 TLSDLIGGIQAVTLGDEEARRRSSQKTVLERKAPPTFEIAVEMHERHRWVVHDSVSEMVD 314
Query: 400 AILAGKLPLFEVRQMDA--------EHHEPLK-------VTPILRGSY-------PEESE 437
+L G+ P +VR ++ E EP K P G + P S
Sbjct: 315 TLLRGRQPTTQVRTVNEAGKVSIVRELPEPAKNGLMPAPNIPATNGGWRSSGRMSPMPST 374
Query: 438 LTINEDKSAEMESD---EDSEDEDYASNQFKNRS-----IKRSVRKPSPPVCVYTYRILE 489
L N ++ +E+D D+++ S++ + I P+ VY Y I
Sbjct: 375 LATNASQTT-LEADLGFSQLLDQNWDSDEAMMSAGMATGITVGANGEELPLHVYPYGIGR 433
Query: 490 ADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTM 549
+L QV +V+ L + +T D+G+ADA+LA + +K + +R ++K Q+P++ +KS T+
Sbjct: 434 DELEQVIEVLNL--PVVLTKDMGSADAVLALRTHIKNHAKLRQISKVRQVPIYSVKSGTI 491
Query: 550 AQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIV 609
Q+ + +R +L M+ G +P ++ + ++ + +E++ALEE RLA+E IV
Sbjct: 492 PQITRTLRRMLHMDDPG----IPEEADLRLFTQNASE------DEVEALEEARLAVEQIV 541
Query: 610 IPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
IP G+ VELLPR + + Q ELVE Y L + + G E N RL+I P
Sbjct: 542 IPKGQPVELLPRSNAVRKMQHELVEHYHLKSTSFGEEPNRRLRIFP 587
>gi|428305288|ref|YP_007142113.1| single-stranded nucleic acid binding R3H domain-containing protein
[Crinalium epipsammum PCC 9333]
gi|428246823|gb|AFZ12603.1| single-stranded nucleic acid binding R3H domain-containing protein
[Crinalium epipsammum PCC 9333]
Length = 589
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 277/586 (47%), Positives = 369/586 (62%), Gaps = 42/586 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L +LP ++R L H + LIEVVMDLGR P ARFP+ + E V ED+ +
Sbjct: 15 DLSKLLHILPEQIRSSLEKHPQQESLIEVVMDLGRLPEARFPNKAEYLGETPVSKEDINY 74
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG FS DNR+GI+R+LHRISAIRNR +IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 75 CIQRVGLFSGDNRAGIERTLHRISAIRNRTGDIIGLTCRVGRAVFGTIAMIRDLVETGNS 134
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 135 ILMLGRPGVGKTTALREIARVLADELHKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAR 194
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEA AA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 195 PELQHQVMIEAVENHMPEVIVIDEIGTELEAQAARTIAERGVQLVGTAHGNHIENLIKNP 254
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 255 TLSDLVGGIQAVTLGDDEARRRASQKTVLERKAPPTFEIAVEMLERHRWVVHESVSDTVD 314
Query: 400 AILAGKLPLFEVRQMDAEHH-----EPLKVTPILRGSY--PEESELTINEDKSAEME--- 449
+L + P +VR ++ H E +V P L S PE + S +M+
Sbjct: 315 TLLRNRKPSPQVRTVNESGHVTITRELPEVAPKLASSLQTPESAPNVRGWRSSGQMQPMP 374
Query: 450 -----------SDEDSEDE------DYASNQFKNRSIKRSVRKPSP---PVCVYTYRILE 489
+DE E+ D + +Q + + + P+ P+ VY Y I
Sbjct: 375 VSKAEIKIRPLADEFGEENSFEQLLDSSWHQQDIYAREHEISGPNGEDLPLHVYPYGISR 434
Query: 490 ADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTM 549
L QV +V+ L + +T ++ ADA+LA S +K + +R ++K +P+ IK++T+
Sbjct: 435 QQLDQVIEVLNL--PVVLTKEMDNADAVLALRSHVKNHSKLRHISKARHIPIHSIKASTI 492
Query: 550 AQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIV 609
Q+ +++R +L M+ G T+D+ + + +EI+ALEE RLA+E IV
Sbjct: 493 PQITRSLRRMLNMDDSGV------GETTDLRLF----SHNGSEDEIEALEEARLAVEQIV 542
Query: 610 IPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
IP G+ VELLPR ++ Q ELVE Y L + + G E N RL+I P
Sbjct: 543 IPKGQPVELLPRSPKVRKIQHELVEHYHLKSTSFGDEPNRRLRIFP 588
>gi|300863790|ref|ZP_07108717.1| single-stranded nucleic acid binding R3H [Oscillatoria sp. PCC
6506]
gi|300338218|emb|CBN53863.1| single-stranded nucleic acid binding R3H [Oscillatoria sp. PCC
6506]
Length = 586
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 279/599 (46%), Positives = 361/599 (60%), Gaps = 62/599 (10%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L+++P +RR + H + LIE+VMDLGR+P ARFPS +SE +V E L H
Sbjct: 6 DLNKLLDIVPEEIRRPIKQHPQRDRLIEIVMDLGRRPEARFPSKAEYLSETLVSKESLNH 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VGDF DNR+GI+++LHRISAIRNR +VIGLT RVGRAV G+ +I DLVE G S
Sbjct: 66 CIQRVGDFGGDNRAGIEQTLHRISAIRNRTGEVIGLTLRVGRAVFGTIGLIRDLVETGQS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH IGRARRMQV +
Sbjct: 126 ILLLGRPGVGKTTALREIARVLADDLEKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVSH 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG ++N+VKNP
Sbjct: 186 PEFQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNRLENLVKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R +H + TVD
Sbjct: 246 TLADLIGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMLERQRWVIHEHVSETVD 305
Query: 400 AILAGKLPLFEVR------------QMDAEHHEPLKVTPI---------------LRGSY 432
+L G+ P +VR +M A P V RGS
Sbjct: 306 ILLRGRQPNLQVRSIGDSGEVIVSQEMAAVPTNPAGVVGASSFGSGKTTFPEAQGWRGSG 365
Query: 433 ------PEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVC 481
P + + + +E E DE + + R R P P+
Sbjct: 366 KMIPLPPPKEQFAAKPAQLSEARYFEQLLDESLSVDPVLPEG--RYSRNAGPNGEDLPLH 423
Query: 482 VYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPV 541
+Y Y I L QV + L + +T DI +AD +LA S ++ +R +AK Q+P+
Sbjct: 424 IYPYGIPRHQLEQVIATLNL--PVVLTKDIDSADVVLALRSNVRNQSKLRHLAKTRQVPL 481
Query: 542 FVIKSNTMAQMVKAVRMILGMESFGT-----ISKLPNKSTSDIEIEDDAPKRKPTLEEID 596
IK+ T+ + +A+R +L M+ GT + + +SD EI+
Sbjct: 482 HTIKAGTLPLVARALRRLLDMDDPGTPEMADLGLFAHSGSSD---------------EIE 526
Query: 597 ALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
ALEE RLA+E IVIP G+ VELLPR S + Q ELVE Y L + + G E N RL+I P
Sbjct: 527 ALEETRLAVEQIVIPKGQPVELLPRSSHVRKMQHELVEHYHLKSHSFGEEPNRRLRIYP 585
>gi|359461140|ref|ZP_09249703.1| hypothetical protein ACCM5_20609 [Acaryochloris sp. CCMEE 5410]
Length = 577
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 273/575 (47%), Positives = 366/575 (63%), Gaps = 34/575 (5%)
Query: 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHA 160
LE L++LP +R L H + +IEVVMDLGR+P ARFP +S + + +DL +
Sbjct: 16 LEQLLDILPETLRSHLQHHPQRSVMIEVVMDLGRQPEARFPGQAEYLSTEPISRDDLDYC 75
Query: 161 ISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI 220
I +V FS DNR+GI+R+LHRISA+RNR+ ++IGLTCRVGRAV G+ EII DLVE G SI
Sbjct: 76 IQRVSHFSGDNRAGIERTLHRISAMRNRQGEIIGLTCRVGRAVLGTTEIIRDLVESGRSI 135
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNV 280
L++G PGVGKTT +REIAR+LADD +KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 136 LMLGRPGVGKTTALREIARVLADDLLKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVARP 195
Query: 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPS 340
+QH VMIEAVENH PE I+IDEIGTELEA AA TIA+RGVQL+GTAHG I+N++KNP+
Sbjct: 196 ELQHQVMIEAVENHTPEVIVIDEIGTELEAAAARTIAERGVQLIGTAHGNRIENLLKNPT 255
Query: 341 LQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDA 400
L LVGGI+SVTLGD+EA++R QK++LERK PPTF AVEM+ R+ VH + T+D
Sbjct: 256 LSDLVGGIQSVTLGDDEARRRGSQKSVLERKAPPTFDIAVEMLERSRWIVHEEVANTIDN 315
Query: 401 ILAGKLPLFEVRQMDAE-----HHEPLKVTPILRGSYPEES-----------ELTINEDK 444
+L G++P +VR + HE L +PI+ + P ES + N
Sbjct: 316 LLRGRMPNPQVRTVSESGKVTITHE-LSTSPIVEPT-PIESAPSGWRSSGRMKPVPNPVA 373
Query: 445 SAEMESDEDSEDEDYA---SNQFKNR-SIKRSVRKPSPPVCVYTYRILEADLLQVAKVMG 500
A+ + +E D + +Q+ N P+ VY Y + + L QV +
Sbjct: 374 PAKTDFNEFQTLLDASLQQQDQYGNTLHFAAGPNGEDLPLHVYPYAVSRSQLDQVITTLN 433
Query: 501 LEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMIL 560
L I +T D+ AD I A S +K + +R +AK Q+P+ +KS+T+ Q+ + +R ++
Sbjct: 434 L--PIVLTKDMDHADVIFALRSHLKHHSKLRNLAKTRQVPIHTVKSSTIPQIARGLRRLV 491
Query: 561 GMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLP 620
M+ GT + K S +D EI+ALEE RLA+E IVIP + VELLP
Sbjct: 492 NMDDPGTPELVDLKLFSGSNDDD----------EIEALEEARLAVEQIVIPKKQPVELLP 541
Query: 621 RRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
R + I Q EL+E Y+L + + G + N RL+I P
Sbjct: 542 RSASIRKMQHELIEHYRLQSRSFGEDPNRRLRIYP 576
>gi|409992005|ref|ZP_11275221.1| single-stranded nucleic acid binding R3H [Arthrospira platensis
str. Paraca]
gi|291568683|dbj|BAI90955.1| Ycf45 protein [Arthrospira platensis NIES-39]
gi|409937126|gb|EKN78574.1| single-stranded nucleic acid binding R3H [Arthrospira platensis
str. Paraca]
Length = 592
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 277/612 (45%), Positives = 367/612 (59%), Gaps = 82/612 (13%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L+++P +R+ L H E LIE+VMDLGR P ARFPS +S+Q V +DL H
Sbjct: 6 DLNRLLDIVPPTVRKNLINHPERECLIEIVMDLGRLPEARFPSNAEYLSQQPVTWDDLSH 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
IS++G+FS DNR+GI+++LHRISAIRNR +VIGLTCRVGRAV G +I DLVE GGS
Sbjct: 66 CISRIGEFSGDNRAGIEKTLHRISAIRNRTGKVIGLTCRVGRAVFGKIGMIRDLVETGGS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGD+PH IGRARRMQV +
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADELHKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAS 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TI++RGVQL+GTAHG I+N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTISERGVQLIGTAHGNRIENLMKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI++VTLGD+EA++R QKT+LERK PPTF A+EM+ R VH + TVD
Sbjct: 246 TLADLIGGIQAVTLGDDEARRRGSQKTVLERKAPPTFDIAIEMLERERWVVHESVSTTVD 305
Query: 400 AILAGKLPLFEVRQMD--------AEHHE------------------------------- 420
+L G P +VRQM+ E +
Sbjct: 306 GLLRGMQPTLQVRQMNDRGEVTVTQERYSTPAARNAVPAGSSTGSSRPLPPLSAPGLGGL 365
Query: 421 -------PLKVTPILR-GSYPEESELTINEDK--SAEMESDEDSEDE--DYASNQFKNRS 468
PL + +R GS PE T ++ +A ES +D D N F
Sbjct: 366 RASGKMMPLPTSTTVRSGSVPENQPATQEFEQLLNASFESPGFGDDNSLDLGDNGFNEDD 425
Query: 469 IKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNP 528
+ P+ +Y Y I + QV + + L + VT DI AD +LA S ++
Sbjct: 426 L---------PLHIYPYAIARYQIEQVIRTLML--PVVVTKDIDGADVVLALRSHIRNQS 474
Query: 529 WIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGT-----ISKLPNKSTSDIEIED 583
+R +AK +P+ +KS + Q+ KA+ +L T +S + ++SD
Sbjct: 475 KLRQMAKNRHIPIHTVKSGSPPQIAKALHRLLHRSDPSTPEVPDLSLFASGNSSD----- 529
Query: 584 DAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENS 643
E++ALEE RLA+E IVIP G+ VELLPR ++ Q ELVE Y+L + +
Sbjct: 530 ----------ELEALEEARLAVEEIVIPKGQPVELLPRSPKVRKMQHELVEHYRLKSNSF 579
Query: 644 GTELNPRLQILP 655
G E N R++I P
Sbjct: 580 GEEPNRRIRIYP 591
>gi|158334816|ref|YP_001515988.1| hypothetical protein AM1_1653 [Acaryochloris marina MBIC11017]
gi|158305057|gb|ABW26674.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length = 577
Score = 470 bits (1210), Expect = e-129, Method: Compositional matrix adjust.
Identities = 271/577 (46%), Positives = 362/577 (62%), Gaps = 38/577 (6%)
Query: 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHA 160
LE L++LP +R L H + +IEVVMDLGR+P ARFP +S + + +DL +
Sbjct: 16 LEQLLDILPETLRSHLQHHPQRSVMIEVVMDLGRQPEARFPGQAEYLSTEPISRDDLDYC 75
Query: 161 ISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI 220
I +V FS DNR+GI+R+LHRISA+RNR+ ++IGLTCRVGRAV G+ EII DLVE G SI
Sbjct: 76 IQRVSHFSGDNRAGIERTLHRISAMRNRQGEIIGLTCRVGRAVLGTTEIIRDLVESGRSI 135
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNV 280
L++G PGVGKTT +REIAR+LADD +KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 136 LMLGRPGVGKTTALREIARVLADDLLKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVARP 195
Query: 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPS 340
+QH VMIEAVENH PE I+IDEIGTELEA AA TIA+RGVQL+GTAHG I+N++KNP+
Sbjct: 196 ELQHQVMIEAVENHTPEVIVIDEIGTELEAAAARTIAERGVQLIGTAHGNRIENLLKNPT 255
Query: 341 LQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDA 400
L LVGGI+SVTLGD+EA++R QK++LERK PPTF AVEM+ R+ VH + T+D
Sbjct: 256 LSDLVGGIQSVTLGDDEARRRGSQKSVLERKAPPTFDIAVEMLERSRWIVHEEVANTIDN 315
Query: 401 ILAGKLPLFEVRQMDAE-----HHEPLKVTPI------------LRGS---YPEESELTI 440
+L G++P +VR + HE L TPI R S P +++
Sbjct: 316 LLRGRMPNPQVRTVSESGKVTITHE-LSTTPIPEPTPIESAPSGWRSSGRMKPVPNQVAP 374
Query: 441 NEDKSAEMES--DEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKV 498
+ E ++ D + +D N P+ VY Y + + L QV
Sbjct: 375 AKTDFNEFQTLLDASLQQQDQYGNTLH---FAAGPNGEDLPLHVYPYAVSRSQLDQVITT 431
Query: 499 MGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRM 558
+ L I +T D+ AD I A S +K + +R +AK +P+ +KS+T+ Q+ + +R
Sbjct: 432 LNL--PIVLTKDMDHADVIFALRSHLKHHSKLRNLAKTRHVPIHTVKSSTIPQIARGLRR 489
Query: 559 ILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVEL 618
++ M+ GT + K S +D EI+ALEE RLA+E IVIP + VEL
Sbjct: 490 LVNMDDPGTPELVDLKLFSGSNDDD----------EIEALEEARLAVEQIVIPKKQPVEL 539
Query: 619 LPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
LPR + I Q EL+E Y+L + + G + N RL+I P
Sbjct: 540 LPRSASIRKMQHELIEHYRLQSRSFGEDPNRRLRIYP 576
>gi|443327493|ref|ZP_21056117.1| hypothetical protein Xen7305DRAFT_00020990 [Xenococcus sp. PCC
7305]
gi|442792922|gb|ELS02385.1| hypothetical protein Xen7305DRAFT_00020990 [Xenococcus sp. PCC
7305]
Length = 584
Score = 470 bits (1210), Expect = e-129, Method: Compositional matrix adjust.
Identities = 270/580 (46%), Positives = 374/580 (64%), Gaps = 38/580 (6%)
Query: 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHA 160
L+ L + P+ +R ++ H + +LIEVVMDLGR P ARF + + E+ + EDL+++
Sbjct: 17 LDELLGIFPTVIRDKIEAHPQKDNLIEVVMDLGRLPEARFRNEVCYLGEKPISKEDLQYS 76
Query: 161 ISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI 220
I +VG F DNR+GI+R+LHRISA+RNR +IGLTCR+GRAV G+ +I DL+E GGSI
Sbjct: 77 IERVGIFGGDNRAGIERTLHRISAMRNRAGDIIGLTCRIGRAVFGTIVMIRDLIETGGSI 136
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNV 280
L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 137 LLLGRPGVGKTTALREIARVLADDLEKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVARP 196
Query: 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPS 340
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG ++N++KNP+
Sbjct: 197 ELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNALENLIKNPT 256
Query: 341 LQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDA 400
L LVGGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R + VH T+D+
Sbjct: 257 LSDLVGGIQAVTLGDDEARRRGSQKTVLERKAPPTFAIAVEMLERQKWIVHEDTAQTIDS 316
Query: 401 ILAGKLPLFEVRQMD------------AEHHEPLK------VTPILRGSYPEESELTINE 442
+L G P ++R +D H + ++ V P+ + ++T
Sbjct: 317 LLRGIEPGSQIRTVDDSGEVSIVEQEAVSHIKGVQSRNSNIVAPLSPRGWRASGKMTPIA 376
Query: 443 DKSAEMESDEDSEDEDYASNQFKNRSIKRS-VRKPSP-----PVCVYTYRILEADLLQVA 496
S + ++ + E E ++ + S +R P P PV +Y Y I + + +V
Sbjct: 377 PLSRKKKNKINPEFEMMLEGSWQTQDPSGSKIRTPGPNGEDWPVYIYPYGIGRSQIERVI 436
Query: 497 KVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAV 556
V+ L + +T D+ ADA++A S++K + +R +AK + + +KSNT+ Q+ + +
Sbjct: 437 DVLDL--PVVLTKDVDHADAVVALRSQIKHHSRLRQLAKTRNIAIHAVKSNTIPQITRTL 494
Query: 557 RMILGMESFGTISKLPNKS-TSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEA 615
R +L +E PN + T+D+ + A +EI+ALEE RLA+E IVIP G+
Sbjct: 495 RQLLQLED-------PNATNTADVRLFTTASND----DEIEALEEARLAVEQIVIPQGQP 543
Query: 616 VELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
VELLPR S+I Q ELVE Y L + + G E N RL+I P
Sbjct: 544 VELLPRSSKIRKMQHELVEHYHLESNSFGEEPNRRLRIYP 583
>gi|427739198|ref|YP_007058742.1| hypothetical protein Riv7116_5830 [Rivularia sp. PCC 7116]
gi|427374239|gb|AFY58195.1| hypothetical protein Riv7116_5830 [Rivularia sp. PCC 7116]
Length = 581
Score = 470 bits (1210), Expect = e-129, Method: Compositional matrix adjust.
Identities = 273/588 (46%), Positives = 373/588 (63%), Gaps = 45/588 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L +LP +R+ L H + L+EVV+DLGR P ARFPSG +SE + + +
Sbjct: 6 DLRKLLAILPQDLRQMLEQHPQRDSLVEVVLDLGRYPEARFPSGAEYLSEVPITQQQIDD 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG F DNR+GI+++LHRISAIRNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 CIVRVGTFGGDNRAGIEQTLHRISAIRNRTGKIIGLTCRVGRAVHGTISMIRDLVENGQS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT++REIAR+LADD KRVVI+DTSNEI GDGDVPH IG+ARRMQV +
Sbjct: 126 ILMLGRPGVGKTTVLREIARVLADDLDKRVVIIDTSNEIAGDGDVPHPAIGKARRMQVAH 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+ QH VMIEAVENHMPE I+IDEIGTELEALA+ TIA+RGVQL+GTAHG I+N++KNP
Sbjct: 186 PDQQHQVMIEAVENHMPEVIVIDEIGTELEALASRTIAERGVQLIGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF AVEM R VH + T+D
Sbjct: 246 TLSDLVGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMQERQRWVVHESVADTID 305
Query: 400 AILAGKLPLFEVRQMD-------AEHHEPL------------------------KVTPIL 428
+L G+ P +VR +D A H + + + +
Sbjct: 306 NLLRGRQPTPQVRTIDDNGKVAIARHLTAINGGASQTDRGEENRGRSSNRTNGWRASGQM 365
Query: 429 RGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSV-RKPSPPVCVYTYRI 487
R P +E N + S E D + S+ F++ K S P+ +Y Y +
Sbjct: 366 RPLVPLGAEYQ-NGNGSGRSEFDRLLDQSFNNSSAFESNGDKHSGPNGEDLPLHIYPYGV 424
Query: 488 LEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSN 547
+ L QV +V+ L + +T DI +ADAILA S +K + +R +AK Q+P+ +IKS+
Sbjct: 425 SRSQLDQVVEVLHL--PVILTKDIDSADAILALRSHVKNHAKLRQMAKARQVPIHMIKSS 482
Query: 548 TMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEY 607
T+ Q+ + +R +L ++ ++ ++ + + + + +EIDALEE RLA+E
Sbjct: 483 TIPQVTRGLRRLLNIDE----PEVTDERELQLFLHNGSD------DEIDALEEARLAVEQ 532
Query: 608 IVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
IVIP G+ VELLPR S++ Q ELVE Y+L + + G E N RL+I P
Sbjct: 533 IVIPKGQPVELLPRSSQVRKMQHELVEHYRLKSNSFGEEPNRRLRIFP 580
>gi|17229801|ref|NP_486349.1| hypothetical protein alr2309 [Nostoc sp. PCC 7120]
gi|17131401|dbj|BAB74008.1| alr2309 [Nostoc sp. PCC 7120]
Length = 579
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 278/594 (46%), Positives = 371/594 (62%), Gaps = 59/594 (9%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L++LP +R+ L H + L+EVV+DLGR+P ARFP+ +SE V +
Sbjct: 6 DLQKLLDILPQDLRQILENHPKRDSLVEVVLDLGRRPEARFPNQAEYLSETPVTQAQIDD 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+ +VG+F DNR+GI+++LHRIS IRNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 CVQRVGNFGGDNRAGIEQTLHRISGIRNRSGKIIGLTCRVGRAVFGTIGMIRDLVETGKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGDV H IGRARRMQV +
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADELHKRVVIIDTSNEIAGDGDVAHPAIGRARRMQVAH 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 246 TLSDLVGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMLERQRWVVHESVADTVD 305
Query: 400 AILAGKLPLFEVRQMDAEHHEPL-KVTPILRG-----SYPEES----------------- 436
+L G+ P + R +D + + + ++ G + PEES
Sbjct: 306 TLLRGRQPSPQTRTVDEQGKVAITRQLSVVNGRGGQLATPEESFAPARPSNGWRASGQML 365
Query: 437 ---ELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVYTYRIL 488
L + ++ + + DE + N + S R+P P P+ VY Y +
Sbjct: 366 AIPSLPLERERISGQSEFDRLLDESF--NYPEAIDFGSSARQPGPNGEDLPLHVYPYGVS 423
Query: 489 EADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNT 548
L QV V+ L + +T DI ADAILA S +K + +R +AK +P+ VIKS+T
Sbjct: 424 RHQLEQVISVLTL--PVVLTKDIDNADAILALRSHVKNHAKLRQMAKARHVPIHVIKSST 481
Query: 549 MAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTL-------EEIDALEEV 601
+ Q+ + +R +L ME D E+ DD R+ L +E+DALEE
Sbjct: 482 IPQITRGLRRLLNME--------------DPEVADD---RELQLFLHNGSDDEMDALEEA 524
Query: 602 RLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
RLA+E IVIP G+ VELLPR ++ Q ELVE Y+L + + G E N RL+I P
Sbjct: 525 RLAVEQIVIPKGQPVELLPRSPQVRKMQHELVEHYRLKSHSFGEEPNRRLRIYP 578
>gi|75906351|ref|YP_320647.1| single-stranded nucleic acid binding R3H [Anabaena variabilis ATCC
29413]
gi|75700076|gb|ABA19752.1| Single-stranded nucleic acid binding R3H [Anabaena variabilis ATCC
29413]
Length = 579
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 273/601 (45%), Positives = 367/601 (61%), Gaps = 73/601 (12%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L++LP +R+ L H + L+EVV+DLGR+P ARFP+ +SE V +
Sbjct: 6 DLQKLLDILPQDLRQVLENHPKRDSLVEVVLDLGRRPEARFPNQAEYLSETPVTQAQIDD 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+ +VG+F DNR+GI+++LHRISAIRNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 CVQRVGNFGGDNRAGIEQTLHRISAIRNRSGKIIGLTCRVGRAVFGTIGMIRDLVETGKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGDV H IGRARRMQV +
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADELHKRVVIIDTSNEIAGDGDVAHPAIGRARRMQVAH 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 246 TLSDLVGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMLERQRWVVHESVADTVD 305
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
+L G+ P + R +D + G +L++ + ++ + E+S
Sbjct: 306 TLLRGRQPSPQTRTVDDQ------------GKVAITRQLSVVNGRGGQLATPEESFSPAR 353
Query: 460 ASNQFKNRS------------------------------------IKRSVRKPSP----- 478
ASN ++ S R+P P
Sbjct: 354 ASNGWRASGQMLAIPSLPLERERISGQSEFDRLLDESFNYPEAIDFGSSARQPGPNGEDL 413
Query: 479 PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQ 538
P+ +Y Y + L QV V+ L + +T DI ADAILA S +K + +R +AK
Sbjct: 414 PLHIYPYGVSRHQLEQVISVLTL--PVVLTKDIDNADAILALRSHVKNHAKLRQMAKARH 471
Query: 539 LPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKR----KPTLEE 594
+P+ VIKS+T+ Q+ + +R +L ++ D EI DD + + +E
Sbjct: 472 VPIHVIKSSTIPQITRGLRRLLNLD--------------DPEIADDRELQLFLHNGSDDE 517
Query: 595 IDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQIL 654
+DALEE RLA+E IVIP G+ VELLPR ++ Q ELVE Y+L + + G E N RL+I
Sbjct: 518 MDALEEARLAVEQIVIPKGQPVELLPRSPQVRKMQHELVEHYRLKSHSFGEEPNRRLRIY 577
Query: 655 P 655
P
Sbjct: 578 P 578
>gi|443316490|ref|ZP_21045932.1| hypothetical protein Lep6406DRAFT_00028420 [Leptolyngbya sp. PCC
6406]
gi|442783923|gb|ELR93821.1| hypothetical protein Lep6406DRAFT_00028420 [Leptolyngbya sp. PCC
6406]
Length = 575
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 274/585 (46%), Positives = 364/585 (62%), Gaps = 47/585 (8%)
Query: 104 FLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK 163
L +LP+ +R +L +H LIEVV+DLGR+P ARFP+G + E +V E L+H I +
Sbjct: 4 LLAILPNLLRSQLEVHPHRDQLIEVVLDLGRRPEARFPNGAEYLGESVVSQETLQHCIER 63
Query: 164 VGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVI 223
VG F DNR+GI+++LHRISAIRNR +IGLTCRVGRAV G+ +I DL+E GGSIL++
Sbjct: 64 VGYFGGDNRAGIEQTLHRISAIRNRSGDIIGLTCRVGRAVFGTIGMIRDLIETGGSILML 123
Query: 224 GPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQ 283
G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH IGRARRMQV +Q
Sbjct: 124 GRPGVGKTTALREIARVLADDLQKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAQPELQ 183
Query: 284 HSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQI 343
H VMIEAVENHMPE I+IDEIGTELEA AA TIA+RGVQLVGTAHG ++N++KNP+L
Sbjct: 184 HQVMIEAVENHMPEVIVIDEIGTELEATAARTIAERGVQLVGTAHGNRLENLIKNPTLSD 243
Query: 344 LVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILA 403
LVGGI+SVTLGD+EA++R QK++LERK PPTF AVEM+ R +H + TVD +L
Sbjct: 244 LVGGIQSVTLGDDEARRRGSQKSVLERKAPPTFDIAVEMLERQRWVIHEEVANTVDNLLR 303
Query: 404 GKLPLFEVRQ------MDAEHHEPLKVTPIL--------RGSYPEESELTINEDKSAEME 449
G+ P +VR+ + H P P L + +T ++
Sbjct: 304 GRPPAAQVRETAENGRVTITHELPDGSQPTLVPRAERLSPSGWRAAGRMTPLPPPASLAA 363
Query: 450 SDEDSEDEDYASNQFKNRSIKRSVRKPSP-----------PVC--------VYTYRILEA 490
E + +AS +I SP PV +Y Y +
Sbjct: 364 PALSPEQQTFAS--LLEDTIGAPPLASSPAQIATLLPEDAPVGPNGEDILRIYPYGLSRH 421
Query: 491 DLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMA 550
L QV + + L + +T D+ ADA+LA S +K + +R VAK +P+ +KSN+M
Sbjct: 422 QLDQVIRTLQL--PVLLTKDLEMADAVLALRSHVKNHVKLRHVAKARHIPIHTVKSNSMP 479
Query: 551 QMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVI 610
Q+V++++ +L +E GTI + +E +PK +E++ALEE RLA+E IVI
Sbjct: 480 QLVRSLQRLLDLEE-GTIQ-------PGVNLELFSPKGDA--DELEALEEARLAVEQIVI 529
Query: 611 PGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
P G+ VELLPR + I Q EL E Y+L + + G E N RL+I P
Sbjct: 530 PKGQPVELLPRSARIRKMQHELAEHYRLKSLSFGDEPNRRLRIYP 574
>gi|440684212|ref|YP_007159007.1| single-stranded nucleic acid binding R3H domain-containing protein
[Anabaena cylindrica PCC 7122]
gi|428681331|gb|AFZ60097.1| single-stranded nucleic acid binding R3H domain-containing protein
[Anabaena cylindrica PCC 7122]
Length = 579
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 275/591 (46%), Positives = 367/591 (62%), Gaps = 53/591 (8%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L++LP +R+ L H + L+EVV+DLGR+P ARFP +SE V +
Sbjct: 6 DLQKLLDILPQDLRQVLENHPKRDSLVEVVLDLGRRPEARFPHEAEYLSETTVNQAQIDD 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG F DNR+GI+++LHRISAIRNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 CIQRVGTFGGDNRAGIEQTLHRISAIRNRTGKIIGLTCRVGRAVFGTIGMIRDLVETGKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+ H IGRARRMQV
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADDFNKRVVIIDTSNEIAGDGDIAHPAIGRARRMQVAK 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 246 TLCDLVGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMLERQRWVVHETVADTVD 305
Query: 400 AILAGKLPLFEVRQMDAEHH----EPLKVTPILRGSYPEESE------------------ 437
+L G+ P + R +D + L V GS P + E
Sbjct: 306 TLLRGRQPNPQTRTVDEKGKVAISRQLSVVNGRGGSLPSDEESFPAVKQANGWRSSGQMV 365
Query: 438 ----LTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVYTYRIL 488
L++ ++ + DE + N ++ S ++ P P+ +Y Y +
Sbjct: 366 ALPPLSLERERVTGRSEFDRLLDESF--NYSESIDFSTSTKQAGPNGEDLPLHIYPYGVS 423
Query: 489 EADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNT 548
L QV V+ L + +T DI ADAILA S +K + +R +AK +P+ VIKS+T
Sbjct: 424 RHQLEQVISVLSLP--VILTKDIDNADAILALRSHVKNHAKLRQMAKARHVPIHVIKSST 481
Query: 549 MAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKR----KPTLEEIDALEEVRLA 604
+ Q+ + +R +L ++ D E+ DD + + +E+DALEE RLA
Sbjct: 482 IPQITRGLRRLLNID--------------DPEMGDDRELQLLLHRGGDDEMDALEEARLA 527
Query: 605 IEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
+E IVIP G+ VELLPR S++ Q ELVE Y+L +++ G E N RL+I P
Sbjct: 528 VEQIVIPKGQPVELLPRSSQVRKMQHELVEHYRLKSDSFGEEPNRRLRIYP 578
>gi|428780211|ref|YP_007171997.1| hypothetical protein Dacsa_1993 [Dactylococcopsis salina PCC 8305]
gi|428694490|gb|AFZ50640.1| hypothetical protein Dacsa_1993 [Dactylococcopsis salina PCC 8305]
Length = 602
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 271/579 (46%), Positives = 366/579 (63%), Gaps = 39/579 (6%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L LP + L H + G+LIEVV+DLGRKP ARF + + E+ V ED++
Sbjct: 39 DLDTLLATLPPEISSTLTNHPQRGELIEVVIDLGRKPEARFANNWEYLREEPVTREDIQF 98
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+VG FS DNR+GI+R+LHRISA+RNR +++GLTCR+GRAV G+ +I DLVE G S
Sbjct: 99 CSDRVGMFSGDNRAGIERTLHRISAMRNRGGEIVGLTCRIGRAVYGTIGMIRDLVETGRS 158
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 159 ILMLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPHPSIGRARRMQVSR 218
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG +DN++KNP
Sbjct: 219 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNRLDNLIKNP 278
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI++VTLGDEEA++R QKT+LERK PTF AVEM+ R VH + T+D
Sbjct: 279 TLSDLIGGIQAVTLGDEEARRRGSQKTVLERKALPTFDIAVEMLERRRWVVHQEVSETID 338
Query: 400 AILAGKLPLFEVRQMDAEHHEPL-------KVTPILRGSYPEESELT---INEDKSAEME 449
L G P EVR + + + K TP G ++ + S +M
Sbjct: 339 QFLRGHDPATEVRLANEQGEVEIYTEAGSSKSTPYGNGKTHLQNPVLPRPTGWRASGQMT 398
Query: 450 SDEDS-----EDEDYASNQFKNRSIKRSVRKPSP-----PVCVYTYRILEADLLQVAKVM 499
E S E E ++ + VR P P PV VY Y I L QV +++
Sbjct: 399 PVESSPPHNPEFEQLLDQSWQQADQSKKVRTPGPNGEDWPVYVYPYGISRNLLDQVLELL 458
Query: 500 GLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMI 559
L + +T DI +ADA++A S++K + +R +AK ++P+ V+KSNT+ Q+ + ++ +
Sbjct: 459 KL--PVVLTKDIESADAVIALRSQVKNHSKLRQMAKNKEVPIHVVKSNTLPQITRTLQRL 516
Query: 560 LGME---SFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAV 616
L ++ + G ++ + +S +E++ALEE RLA+E IVIP G+ V
Sbjct: 517 LDLDPTTAEGIDFRMFTEGSSQ--------------DEMEALEEARLAVEQIVIPKGQPV 562
Query: 617 ELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
ELLPR + + Q EL E Y+L + + G E N RL+I P
Sbjct: 563 ELLPRPANVRKMQHELAEHYRLQSNSFGEEPNRRLRIYP 601
>gi|427719465|ref|YP_007067459.1| single-stranded nucleic acid binding R3H domain-containing protein
[Calothrix sp. PCC 7507]
gi|427351901|gb|AFY34625.1| single-stranded nucleic acid binding R3H domain-containing protein
[Calothrix sp. PCC 7507]
Length = 578
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 283/591 (47%), Positives = 369/591 (62%), Gaps = 54/591 (9%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L++LP +R+ L H + L+EVV+DLGR+P ARFP +SE V E +
Sbjct: 6 DLQKLLDILPQGLRQVLENHPKRDILVEVVLDLGRRPEARFPHQAEYLSETPVTQEQIDD 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG F DNR+GI+++LHRISAIRNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 CIERVGIFGGDNRAGIEQTLHRISAIRNRTGKIIGLTCRVGRAVFGTIGMIRDLVETGKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGDV H IGRARRMQV +
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADELNKRVVIIDTSNEIAGDGDVAHPAIGRARRMQVAH 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+ QH VMIEAVENHMPE IIIDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PDQQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 246 TLADLVGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMLERQRWVVHESVADTVD 305
Query: 400 AILAGKLPLFEVRQMDAEHHEPL-KVTPILRGSYPEESELTINEDKSAEMESDED--SED 456
+L G+ P + R +D E + + ++ G P ED S M S
Sbjct: 306 NLLRGRQPNPQTRTVDDEGKVSVARQLAVVNGRGPHS---IFAEDASPPMRPSNGWRSSG 362
Query: 457 EDYASNQF---KNRSIKRS--------------------VRKPSP-----PVCVYTYRIL 488
+ A F + R RS R+P P P+ +Y Y +
Sbjct: 363 QMVALPPFSLERERVTGRSEFDRLLDESFNYSEAVDFDATRQPGPNGEDLPLHIYPYGVS 422
Query: 489 EADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNT 548
L QV V+ L + +T DI +ADAILA S +K + +R +AK +P+ VIKS+T
Sbjct: 423 RHQLEQVISVLTL--PVILTKDIDSADAILALRSHVKNHAKLRQMAKARHVPIHVIKSST 480
Query: 549 MAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKR----KPTLEEIDALEEVRLA 604
+ Q+ + +R +L M+ D E+ DD + + +EIDALEE RLA
Sbjct: 481 IPQITRGLRRLLNMD--------------DPELGDDRELQLLLHSGSEDEIDALEEARLA 526
Query: 605 IEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
+E IVIP G+ VELLPR S++ Q ELVE Y+L +++ G E N RL+I P
Sbjct: 527 VEQIVIPKGQPVELLPRSSQVRKMQHELVEHYRLKSDSFGEEPNRRLRIYP 577
>gi|67922837|ref|ZP_00516336.1| Single-stranded nucleic acid binding R3H [Crocosphaera watsonii WH
8501]
gi|67855330|gb|EAM50590.1| Single-stranded nucleic acid binding R3H [Crocosphaera watsonii WH
8501]
Length = 604
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 278/604 (46%), Positives = 379/604 (62%), Gaps = 46/604 (7%)
Query: 82 SVSDSPNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFP 141
+V P + + R +L L++LPS + L H L+EVVMDLGR P ARFP
Sbjct: 16 TVPSIPETVLSQRMQITDDLSQLLDILPSSISHCLKEHPNCDRLVEVVMDLGRVPEARFP 75
Query: 142 SGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGR 201
+ + V DL+++I +VG FS DNR+GI+R+LHRISA+RNR +IGLTCRVGR
Sbjct: 76 GESIYLGDVPVSAADLEYSIQRVGIFSGDNRAGIERTLHRISAMRNRGGDIIGLTCRVGR 135
Query: 202 AVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGD 261
AV G+ +I DLVE G S+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GD
Sbjct: 136 AVFGTISMIRDLVETGQSLLLLGRPGVGKTTALREIARVLADDFDKRVVIIDTSNEIAGD 195
Query: 262 GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGV 321
GD+PH IGRARRMQV +QH +MIEAVENHMPE I+IDEIGTELEALAA TIA+RGV
Sbjct: 196 GDIPHPAIGRARRMQVATPELQHKIMIEAVENHMPEVIVIDEIGTELEALAARTIAERGV 255
Query: 322 QLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVE 381
QLVGTAHG I+N++KNP+L L+GGI++VTLGD+EA++R QKT+LERK PPTF A+E
Sbjct: 256 QLVGTAHGNQIENLLKNPTLSDLIGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAIE 315
Query: 382 MISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAE------HHEPLKVTPILRGSYPEE 435
M+ R + +H + T+D +L P +VR +D + EP +TP S+
Sbjct: 316 MLERQKWVIHEDVANTIDILLRSGHPKPQVRTVDEKGEVQITQEEP-DITPN-PASFGRN 373
Query: 436 SELTINEDK--------------SAEMESDEDSEDE-----DYASNQFKNRSIKRSVRKP 476
S + + K + + S+ S E D + Q + + K +R P
Sbjct: 374 SGGIVQQPKGWRASGKMTPVTPFAGKRGSNLSSASEFDRLLDASWTQPEPKGDK--IRVP 431
Query: 477 SP-----PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIR 531
P PV +Y Y I + L QV +V+ L I +T D+ AD ++A S +K +R
Sbjct: 432 GPNGEDFPVYIYPYGIGRSQLEQVIEVLNL--PIVLTKDLDNADVVVALRSHLKNQSKLR 489
Query: 532 GVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPT 591
VAK Q+P+ +KSNT+ Q+ + ++ +LGM+ +K P T+D+ + R
Sbjct: 490 QVAKMRQVPIHGVKSNTIPQITRTLQRLLGMDE----AKTP--ETADLRLF----TRGGN 539
Query: 592 LEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRL 651
+E++ALEE RLA+E IV+P G+ VELLPR ++ Q ELVE Y+L +++ G E N RL
Sbjct: 540 DDELEALEEARLAVEQIVLPKGQPVELLPRSPKVRKMQHELVEHYRLQSDSFGEEPNRRL 599
Query: 652 QILP 655
+I P
Sbjct: 600 RIYP 603
>gi|209525857|ref|ZP_03274392.1| single-stranded nucleic acid binding R3H domain protein
[Arthrospira maxima CS-328]
gi|376002076|ref|ZP_09779925.1| conserved hypothetical protein [Arthrospira sp. PCC 8005]
gi|423062006|ref|ZP_17050796.1| single-stranded nucleic acid binding R3H domain protein
[Arthrospira platensis C1]
gi|209493666|gb|EDZ93986.1| single-stranded nucleic acid binding R3H domain protein
[Arthrospira maxima CS-328]
gi|375329564|emb|CCE15678.1| conserved hypothetical protein [Arthrospira sp. PCC 8005]
gi|406716579|gb|EKD11728.1| single-stranded nucleic acid binding R3H domain protein
[Arthrospira platensis C1]
Length = 592
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 272/612 (44%), Positives = 365/612 (59%), Gaps = 82/612 (13%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L+++P +R+ L H E LIE+VMDLGR P ARFPS +S+Q V +DL H
Sbjct: 6 DLNRLLDIVPPTVRKNLINHPERECLIEIVMDLGRLPEARFPSNAEYLSQQPVTWDDLGH 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
IS++G+FS DNR+GI+++LHRISAIRNR ++IGLTCRVGRAV G +I DLVE GGS
Sbjct: 66 CISRIGEFSGDNRAGIEKTLHRISAIRNRTGKIIGLTCRVGRAVFGKIGMIRDLVETGGS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGD+PH IGRARRMQV +
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADELHKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAS 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TI++RGVQL+GTAHG I+N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTISERGVQLIGTAHGNRIENLMKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI++VTLGD+EA++R QKT+LERK PPTF A+EM+ R VH + TVD
Sbjct: 246 TLADLIGGIQAVTLGDDEARRRGSQKTVLERKAPPTFDIAIEMLERERWVVHESVSTTVD 305
Query: 400 AILAGKLPLFEVRQMDAEHH----EPLKVTPILRGSYPEES------------------- 436
+L G P +VRQM+ + TP R + P +
Sbjct: 306 GLLRGMQPTLQVRQMNDRGEVTVTQERYSTPAARNAVPAGASTGSSRPLPPLSAPGLGGL 365
Query: 437 ----------------ELTINEDKSAEMESDE------------DSEDEDYASNQFKNRS 468
E + E+K A E ++ D D N F
Sbjct: 366 RASGKMMPLPTSTTVREGSAPENKPATQEFEQLLNASFDSQGLGDDNGLDLGDNGFNEDD 425
Query: 469 IKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNP 528
+ P+ +Y Y I + QV + + L + VT DI +AD +LA S ++
Sbjct: 426 L---------PLHIYPYAIARYQIDQVIRTLML--PVVVTKDIDSADVVLALRSHIRNQS 474
Query: 529 WIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGT-----ISKLPNKSTSDIEIED 583
+R +AK +P+ +KS + Q+ KA+ +L T ++ + ++SD
Sbjct: 475 KLRQMAKNRHIPIHTVKSGSPPQIAKALHRLLHRSDPSTPEVPDLTLFASGNSSD----- 529
Query: 584 DAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENS 643
E++ALEE RLA+E IVIP G+ VELLPR ++ Q ELVE Y+L + +
Sbjct: 530 ----------ELEALEEARLAVEEIVIPKGQPVELLPRSPKVRKMQHELVEHYRLKSNSF 579
Query: 644 GTELNPRLQILP 655
G E N R++I P
Sbjct: 580 GEEPNRRIRIYP 591
>gi|119512852|ref|ZP_01631918.1| Single-stranded nucleic acid binding R3H [Nodularia spumigena
CCY9414]
gi|119462480|gb|EAW43451.1| Single-stranded nucleic acid binding R3H [Nodularia spumigena
CCY9414]
Length = 578
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 280/587 (47%), Positives = 367/587 (62%), Gaps = 46/587 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L++LP +R+ L H + L+EVV+DLGR P ARFP+ +SE V +
Sbjct: 6 DLQKLLDILPQDLRQVLESHPQRDSLVEVVLDLGRCPEARFPNQAEYLSETPVTQAQIDD 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG FS DNR+GI+ +LHRISAIRNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 CIQRVGTFSGDNRAGIELTLHRISAIRNRSGRIIGLTCRVGRAVFGTIGMIRDLVETGKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGDVPH IGRARRMQV
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADDFHKRVVIIDTSNEIAGDGDVPHPAIGRARRMQVAQ 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R +H + TVD
Sbjct: 246 TLSDLVGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMLERQRWVIHESVADTVD 305
Query: 400 AILAGKLPLFEVRQMD------------------------AEHHEPLKVTPILR--GSYP 433
+L G+ P + R +D E P + T R G
Sbjct: 306 TLLRGRQPSPQTRTVDDQGKVAVTRQLSVVNGRGGQVSPREESFPPARPTNGWRSSGQMV 365
Query: 434 EESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP-----PVCVYTYRIL 488
L++ ++ + DE + N ++ +K S R P P+ +Y Y +
Sbjct: 366 ALPPLSLERERMTGRTEFDRLLDESF--NYSESFDVKTS-RHAGPNGEDLPLHIYPYGVS 422
Query: 489 EADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNT 548
L QV V+ L + +T DI TADAILA S +K +R +AK +P+ +IKS+T
Sbjct: 423 RHQLEQVIGVLTL--PVVLTKDIDTADAILALRSHVKNQAKLRQMAKARHVPIHMIKSST 480
Query: 549 MAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYI 608
+ Q+ + +R +L +E P+ T D E++ T +E+DALEE RLA+E I
Sbjct: 481 IPQITRGLRRLLNIED-------PDM-TDDPELQ--LFLHSGTDDEMDALEEARLAVEQI 530
Query: 609 VIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
VIP G+ VELLPR S + Q ELVE Y+L +++ G E N RL+I P
Sbjct: 531 VIPKGQPVELLPRSSPVRKMQHELVEHYRLKSDSFGEEPNRRLRIYP 577
>gi|282900213|ref|ZP_06308167.1| Single-stranded nucleic acid binding R3H [Cylindrospermopsis
raciborskii CS-505]
gi|281194888|gb|EFA69831.1| Single-stranded nucleic acid binding R3H [Cylindrospermopsis
raciborskii CS-505]
Length = 575
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 278/589 (47%), Positives = 366/589 (62%), Gaps = 52/589 (8%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ LE+LP + ++L H + +L+EVV+DLGR P ARFP +S+ V +
Sbjct: 5 DLQKLLEILPQDLEKQLQDHPQRDNLVEVVLDLGRLPEARFPGTAEYLSQSPVTQSQIDD 64
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG+F DNR+GI+++LHRISAIRNR ++IGLTCRVGRA+ G+ +I DLVE G S
Sbjct: 65 CIQRVGNFGGDNRAGIEQTLHRISAIRNRNGKIIGLTCRVGRAIFGTIGMIRDLVETGKS 124
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRV+I+DTSNEI GDGD+ H IGRARRMQV
Sbjct: 125 ILMLGRPGVGKTTALREIARVLADDLHKRVIIIDTSNEIAGDGDIAHPAIGRARRMQVAR 184
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE IIIDEIGTELEALA+ TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 185 PELQHQVMIEAVENHMPEVIIIDEIGTELEALASRTIAERGVQLVGTAHGNQIENLIKNP 244
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R+ QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 245 TLSDLVGGIQAVTLGDDEARRRRSQKTVLERKAPPTFEIAVEMLERERWVVHESVADTVD 304
Query: 400 AILAGKLPLFEVRQMDAEHH----EPLK-VTPILRGSYPEESELTINEDK---------- 444
A+L G+ P + R +D + PL V G EE L I +
Sbjct: 305 ALLRGRQPNPQTRTVDEQGKVSIARPLTLVNGYGSGLASEEESLPIKQVNGWRASGHMVA 364
Query: 445 ----SAEMESDEDSE-----DEDYASNQFKNRSIKRSVRKPSP-----PVCVYTYRILEA 490
S E E SE DE + N +R P P+ VY Y +
Sbjct: 365 LPPLSPERERGTSSEFDRLLDESFHQGDSFNLG---KIRSAGPNGEDLPLHVYPYGVSRH 421
Query: 491 DLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMA 550
L V +V+ L + +T DI ADAILA S +K +R +AK LP+ VIKS+ +
Sbjct: 422 QLEHVIEVLKL--PVALTKDIDGADAILALRSHVKNQVKLRQLAKSRHLPIHVIKSSAIP 479
Query: 551 QMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKR----KPTLEEIDALEEVRLAIE 606
Q+ + +R +L M+ D+++ +D + + + +EIDALEE RLA+E
Sbjct: 480 QISRGLRRLLNMD--------------DLDLGEDCELQLLLHEGSDDEIDALEEARLAVE 525
Query: 607 YIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
IVIP G+ VELLPR + + Q ELVE Y+L + + G E N RL+I P
Sbjct: 526 QIVIPKGQPVELLPRSAHVRKMQHELVEHYRLKSHSFGEEPNRRLRIYP 574
>gi|428776905|ref|YP_007168692.1| single-stranded nucleic acid binding R3H domain-containing protein
[Halothece sp. PCC 7418]
gi|428691184|gb|AFZ44478.1| single-stranded nucleic acid binding R3H domain-containing protein
[Halothece sp. PCC 7418]
Length = 599
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 269/577 (46%), Positives = 368/577 (63%), Gaps = 37/577 (6%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L LP + L H + G+LIEVV+DLGRKP ARF + +SE V +DL+
Sbjct: 38 DLDALLATLPPEIASHLTDHEQRGELIEVVIDLGRKPEARFANHWEYLSEATVTRDDLQF 97
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+VG FS DNR+GI+R+LHRISA+RNR +++GLTCR+GRAV G+ +I DLVE G S
Sbjct: 98 CSDRVGMFSGDNRAGIERTLHRISAMRNRTGEIVGLTCRIGRAVYGTIGMIRDLVETGRS 157
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH IGRARRMQV +
Sbjct: 158 ILMLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIPHPSIGRARRMQVAS 217
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALA TIA+RGVQLVGTAHG +DN++KNP
Sbjct: 218 PELQHQVMIEAVENHMPEVIVIDEIGTELEALATRTIAERGVQLVGTAHGNQLDNLIKNP 277
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI++VTLGDEEA++R QKT+LERK PTF AVEM+ R VH + T+D
Sbjct: 278 TLSDLIGGIQAVTLGDEEARRRGSQKTVLERKALPTFDIAVEMLERRRWVVHQDVSVTID 337
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELT-------INEDKSAEMESDE 452
+L G PL EVR + + + + +S L S +M E
Sbjct: 338 QLLRGHDPLTEVRSANEQGEVEISSSGGQSQKMNGKSRLQNPILPRPTGWRASGQMTPVE 397
Query: 453 DSEDEDYASNQFKNRSIKRS------VRKPSP-----PVCVYTYRILEADLLQVAKVMGL 501
S + Q ++S +++ VR P P PV VY Y I L QV ++ L
Sbjct: 398 PSPPRNPDFEQMLDQSWQQAEEHTEKVRTPGPNGEDWPVYVYPYGISRNLLDQVLELSKL 457
Query: 502 EDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILG 561
+ +T DI +ADA++A S++K + +R +AK ++P+ ++KSNT+ Q+ + ++ +L
Sbjct: 458 --PVVLTKDIDSADAVIALRSQVKHHSKLRQLAKTKEVPIHIVKSNTLPQISRTLQRLLD 515
Query: 562 MESF---GTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVEL 618
++ G ++ +S++ +E++ALEE RLA+E IVIP G+ VEL
Sbjct: 516 LDPTTPEGMDLRMFTESSNQ--------------DELEALEEARLAVEQIVIPKGQPVEL 561
Query: 619 LPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
LPR +++ Q EL E Y+L + + G E N RL+I P
Sbjct: 562 LPRPAKVRKMQHELAEHYRLQSNSFGEEPNRRLRIYP 598
>gi|37523337|ref|NP_926714.1| hypothetical protein gvip509 [Gloeobacter violaceus PCC 7421]
gi|35214341|dbj|BAC91709.1| ycf45 [Gloeobacter violaceus PCC 7421]
Length = 535
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 270/569 (47%), Positives = 356/569 (62%), Gaps = 53/569 (9%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+LE L +LP ++ L H L +L+EVV+DLGR+P ARF G +SE V ++L
Sbjct: 6 DLEKLLAILPVPLQERLHAHERLDELVEVVLDLGRRPEARFREGSDYLSEIPVTQDELDG 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++VG+FS DNR+GI+R+LHRISA+RNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 CTARVGEFSGDNRAGIERTLHRISAMRNRHGKIIGLTCRVGRAVFGTIGMIRDLVESGRS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 126 ILLLGRPGVGKTTALREIARVLADDLHKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAR 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG +DN++KNP
Sbjct: 186 PEYQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNKLDNLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI++VTLGDEEA++R QK++LERK PPTF AVEM R + VH + TVD
Sbjct: 246 TLSDLIGGIQTVTLGDEEARRRGTQKSVLERKAPPTFEIAVEMQERYKWIVHKDVAETVD 305
Query: 400 AILAGKLPLFEVRQM-------------DAEHHEPLKVTPILRGSYPEESELTINEDKSA 446
+L + PL E R + +AE EPL GS+ S + + +
Sbjct: 306 YLLRDRKPLPETRALNGAGKVSVTRELSEAEWDEPLTTRT---GSW--HSPVPVVPLGAM 360
Query: 447 EMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEID 506
EME+D D V +Y Y + + L ++ +G +
Sbjct: 361 EMEADFDGSR-----------------------VRIYPYAVSRSHLERIVNTLGY--PVL 395
Query: 507 VTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFG 566
+T +I AD +LA S ++ I VA+ Q+PV +K+NT+ + +A+R IL ++ G
Sbjct: 396 LTKEIDEADVVLALRSHVRDKGKIAAVAQNRQIPVHTVKANTIPHITRALRRILQIDEPG 455
Query: 567 TISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIV 626
L ++ ED E++A+EE RLA+E IV+P G+ VELLPR I
Sbjct: 456 IPGDLDAGLFGSLDSED----------ELEAMEEARLAVEQIVLPKGQPVELLPRAPHIR 505
Query: 627 ARQLELVESYQLAAENSGTELNPRLQILP 655
Q ELVE Y+L +E+ G E N RL+I P
Sbjct: 506 KMQHELVEHYRLKSESFGQEPNRRLRIYP 534
>gi|434403513|ref|YP_007146398.1| hypothetical protein Cylst_1432 [Cylindrospermum stagnale PCC 7417]
gi|428257768|gb|AFZ23718.1| hypothetical protein Cylst_1432 [Cylindrospermum stagnale PCC 7417]
Length = 578
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 281/594 (47%), Positives = 366/594 (61%), Gaps = 60/594 (10%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L++LP +R L H + L+EVV+DLGR+P ARFP +SE V E +
Sbjct: 6 DLQKLLDILPQDLRHVLENHPKRDILVEVVLDLGRRPEARFPQQAEYLSETPVTQEQIDD 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG F DNR+GI+++LHRISAIRNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 CIQRVGIFGGDNRAGIEQTLHRISAIRNRTGKIIGLTCRVGRAVFGTIGMIRDLVETGKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGDV H IGRARRMQV +
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADDLHKRVVIIDTSNEIAGDGDVAHPAIGRARRMQVAH 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+ QH VMIEAVENHMPE IIIDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PDQQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 246 TLCDLVGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMLERQRWVVHESVADTVD 305
Query: 400 AILAGKLPLFEVRQMD------------------------AEHHEPLKVTPILRGS---- 431
+L G+ P + R +D E P++ R S
Sbjct: 306 NLLRGRQPSPQTRTVDEQGKVAITRQLAVVNGRGGQLAGGEESFPPVRQPNGWRSSGQMV 365
Query: 432 ----YPEESELTINEDKSAEM--ESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYTY 485
P E E + + ES S+ DY +++ + P+ +Y Y
Sbjct: 366 ALPALPLERERVTGRSEFDRLLDESFNHSDSFDYHASKHAGPN------GEDLPLHIYPY 419
Query: 486 RILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIK 545
+ L QV V+ L + +T DI +ADAILA S +K + +R +AK Q+P+ VIK
Sbjct: 420 GVSRHQLEQVINVLTL--PVALTKDIDSADAILALRSHIKNHAKLRQMAKARQVPIHVIK 477
Query: 546 SNTMAQMVKAVRMILGMESFGTIS----KLPNKSTSDIEIEDDAPKRKPTLEEIDALEEV 601
S+T+ Q+ + +R +L M+ T +L S SD +E+DALEE
Sbjct: 478 SSTIPQITRGLRRLLNMDDPETADDRELQLFLHSGSD--------------DEMDALEEA 523
Query: 602 RLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
RLA+E IVIP G+ VELLPR S++ Q ELVE Y+L +++ G E N RL+I P
Sbjct: 524 RLAVEQIVIPKGQPVELLPRSSQVRKMQHELVEHYRLKSDSFGEEPNRRLRIYP 577
>gi|354567011|ref|ZP_08986181.1| single-stranded nucleic acid binding R3H domain-containing protein
[Fischerella sp. JSC-11]
gi|353543312|gb|EHC12770.1| single-stranded nucleic acid binding R3H domain-containing protein
[Fischerella sp. JSC-11]
Length = 577
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 279/588 (47%), Positives = 374/588 (63%), Gaps = 49/588 (8%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L +LP +R+ L H + L+EVV+DLGR+P ARFP +SE V +
Sbjct: 6 DLQKLLYILPQDLRQILEKHPQRDSLVEVVLDLGRRPEARFPDQAEYLSEIPVTQNVIDD 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG+F DNR+GI+++LHRISAIRNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 CIQRVGNFGGDNRAGIEQTLHRISAIRNRNGKIIGLTCRVGRAVFGTIGMIRDLVETGKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGDVPH IG+ARRMQV +
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADELNKRVVIIDTSNEIAGDGDVPHPAIGKARRMQVAH 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGT LEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEVIVIDEIGTALEALAARTIAERGVQLVGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 246 TLSDLVGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMLERQRWVVHESVSDTVD 305
Query: 400 AILAGKLPLFEVRQMDAEHHEPL--KVTPILRGSY---PEESELTINEDK----SAEME- 449
++L G P +VR +D + ++TP+ S EES L + S +M+
Sbjct: 306 SLLRGHQPSPQVRTVDESGKVKITRQLTPLNGRSQTLAKEESFLPARQSNGWRASGQMQP 365
Query: 450 -----------SDEDSEDE--DYASNQFKNRSIKRSVRKPSP-----PVCVYTYRILEAD 491
S ++ D D + N F + S + P P+ +Y Y +
Sbjct: 366 LPPLTTEPPKLSRQNEFDRLLDESFNYFGDFDEADS-KLAGPNGEDLPLHIYPYGVSRGQ 424
Query: 492 LLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQ 551
L QV +V+ L + +T DI +ADAILA S +K + +R +AK Q+P+ +IKS+T+ Q
Sbjct: 425 LEQVVEVLNL--PVVLTKDIDSADAILALRSHVKNHAKLRQIAKARQVPIHMIKSSTIPQ 482
Query: 552 MVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKR----KPTLEEIDALEEVRLAIEY 607
+ + +R +L ++ D E+ DD + + +EIDALEE RLA+E
Sbjct: 483 ITRGLRRLLNID--------------DPEVTDDRELQLFLHSASDDEIDALEEARLAVEN 528
Query: 608 IVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
IVIP G+ VELLPR ++ Q ELVE Y+L + + G E N RL+I P
Sbjct: 529 IVIPKGQPVELLPRSPQVRKMQHELVEHYRLKSHSFGEEPNRRLRIYP 576
>gi|282897384|ref|ZP_06305386.1| Single-stranded nucleic acid binding R3H [Raphidiopsis brookii D9]
gi|281198036|gb|EFA72930.1| Single-stranded nucleic acid binding R3H [Raphidiopsis brookii D9]
Length = 573
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 273/585 (46%), Positives = 369/585 (63%), Gaps = 46/585 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ LE+LP + ++L H + +L+EVV+DLGR P ARFP +S+ + +
Sbjct: 5 DLQKLLEILPQDLEKQLQYHSQRDNLVEVVLDLGRLPEARFPGAAEYLSQSPITQSQIDD 64
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG+F DNR+GI+++LHRISAIRNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 65 CIQRVGNFGGDNRAGIEQTLHRISAIRNRNGKIIGLTCRVGRAVFGTIGMIRDLVETGKS 124
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRV+I+DTSNEI GDGD+ H IGRARRMQV
Sbjct: 125 ILMLGRPGVGKTTALREIARVLADDLHKRVIIIDTSNEIAGDGDIAHPAIGRARRMQVAR 184
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE IIIDEIGTELEALA+ TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 185 PELQHQVMIEAVENHMPEVIIIDEIGTELEALASRTIAERGVQLVGTAHGNQIENLIKNP 244
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R+ QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 245 TLSDLVGGIQAVTLGDDEARRRRSQKTVLERKAPPTFEIAVEMLERERWVVHESVAETVD 304
Query: 400 AILAGKLPLFEVRQMDAEHH----EPLKVTPIL-RGSYPEESELTINE----DKSAEMES 450
+L G+ P + R +D + PL V G EE L I + S +M +
Sbjct: 305 TLLRGRQPNPQTRTVDEQGKVSIARPLTVVNGYGSGLASEEESLAIKQVNGWRASGQMVA 364
Query: 451 DEDSEDEDYASNQFKNRSIKRS-----------VRKPSP-----PVCVYTYRILEADLLQ 494
E +++F +R + S +R P P+ VY Y + L
Sbjct: 365 LPPLSPERGTTSEF-DRLLDESFDHGDSFNLGKIRSAGPNGEDLPLHVYPYGVSRHQLEH 423
Query: 495 VAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVK 554
V +++ L + +T DI ADAILA S +K + +R +AK LP+ VIKS+ + Q+ +
Sbjct: 424 VIELLKL--PVALTKDIDGADAILALRSHVKNHAKLRQLAKSRHLPIHVIKSSAIPQISR 481
Query: 555 AVRMILGMESFGTISKLPNKSTSDIEIEDDAPKR----KPTLEEIDALEEVRLAIEYIVI 610
+R +L M+ D+++ +D + + + +EIDALEE RLA+E IVI
Sbjct: 482 GLRRLLNMD--------------DLDLGEDCELQLLLHEGSDDEIDALEEARLAVEQIVI 527
Query: 611 PGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
P + VELLPR + + Q ELVE Y+L + + G E N RL+I P
Sbjct: 528 PKSQPVELLPRSAHVRKMQHELVEHYRLKSHSFGEEPNRRLRIYP 572
>gi|416393486|ref|ZP_11686016.1| hypothetical protein CWATWH0003_2819 [Crocosphaera watsonii WH
0003]
gi|357263482|gb|EHJ12485.1| hypothetical protein CWATWH0003_2819 [Crocosphaera watsonii WH
0003]
Length = 576
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 275/586 (46%), Positives = 373/586 (63%), Gaps = 46/586 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L++LPS + L H L+EVVMDLGR P ARFP + + V DL++
Sbjct: 6 DLSQLLDILPSSISHCLKEHPNCDRLVEVVMDLGRVPEARFPGESIYLGDVPVSAADLEY 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+I +VG FS DNR+GI+R+LHRISA+RNR +IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 SIQRVGIFSGDNRAGIERTLHRISAMRNRGGDIIGLTCRVGRAVFGTISMIRDLVETGQS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 126 LLLLGRPGVGKTTALREIARVLADDFDKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAT 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH +MIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PELQHKIMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLLKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI++VTLGD+EA++R QKT+LERK PPTF A+EM+ R + +H + T+D
Sbjct: 246 TLSDLIGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAIEMLERQKWVIHEDVANTID 305
Query: 400 AILAGKLPLFEVRQMDAE------HHEPLKVTPILRGSYPEESELTINEDK--------- 444
+L P +VR +D + EP +TP S+ S + + K
Sbjct: 306 ILLRSGHPNPQVRTVDEKGEVQITQEEP-DITPN-PASFGRNSGGIVQQPKGWRASGKMT 363
Query: 445 -----SAEMESDEDSEDE-----DYASNQFKNRSIKRSVRKPSP-----PVCVYTYRILE 489
+ + S+ S E D + Q + + K +R P P PV +Y Y I
Sbjct: 364 PVTPFAGKRGSNLSSASEFDRLLDASWTQPEPKGDK--IRVPGPNGEDFPVYIYPYGIGR 421
Query: 490 ADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTM 549
+ L QV +V+ L I +T D+ AD ++A S +K +R VAK Q+P+ +KSNT+
Sbjct: 422 SQLEQVIEVLNL--PIVLTKDLDNADVVVALRSHLKNQSKLRQVAKMRQVPIHGVKSNTI 479
Query: 550 AQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIV 609
Q+ + ++ +LGM+ +K P T+D+ + R +E++ALEE RLA+E IV
Sbjct: 480 PQITRTLQRLLGMDE----AKTP--ETADLRLF----TRGGNDDELEALEEARLAVEQIV 529
Query: 610 IPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
+P G+ VELLPR ++ Q ELVE Y+L +++ G E N RL+I P
Sbjct: 530 LPKGQPVELLPRSPKVRKMQHELVEHYRLQSDSFGEEPNRRLRIYP 575
>gi|298491066|ref|YP_003721243.1| single-stranded nucleic acid-binding R3H domain-containing protein
['Nostoc azollae' 0708]
gi|298232984|gb|ADI64120.1| single-stranded nucleic acid binding R3H domain protein ['Nostoc
azollae' 0708]
Length = 579
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 280/595 (47%), Positives = 365/595 (61%), Gaps = 61/595 (10%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L++LP +R+EL H + L+EVV+DLGR+P ARFP +SE V +
Sbjct: 6 DLQKLLDILPQDLRQELENHPKRDYLVEVVLDLGRRPEARFPHAAEYLSETPVTQAQIDD 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG F DNR+GI+++LHRISAIRNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 CIQRVGTFGGDNRAGIEQTLHRISAIRNRTGKIIGLTCRVGRAVFGTIGMIRDLVETGKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+ HS IGRARRMQV
Sbjct: 126 ILMLGCPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDIAHSAIGRARRMQVAK 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 246 TLSDLVGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMMERQRWVVHESVADTVD 305
Query: 400 AILAGKLPLFEVRQMDAEHH----EPLKVTPILRGSYPEESE------------------ 437
+L G+ + R MD L V G+ E E
Sbjct: 306 TLLRGRQANPQTRSMDENGKVAITRQLSVVQGRGGNLASEEESLPAVKQVNGWRSSGQMV 365
Query: 438 ----LTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP------PVCVYTYRI 487
L+I ++ + DE + + + SI S K + P+ +Y Y +
Sbjct: 366 ALPPLSIERERVTGRSEFDRLLDESF---NYSSDSIDFSHTKSAGPNGEDLPLHIYPYGV 422
Query: 488 LEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSN 547
L QV V+ L + +T DI + DAILA S +K + ++ +AK LP+ VIKS+
Sbjct: 423 SRHQLEQVISVLTL--PVVLTKDIDSGDAILALRSHVKNHAKLKQIAKARHLPIHVIKSS 480
Query: 548 TMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTL-------EEIDALEE 600
T+ Q+ + +R +L ++ D EI DD R+ L +EIDALEE
Sbjct: 481 TIPQITRGLRRLLNID--------------DPEIGDD---RELQLLLHSGSDDEIDALEE 523
Query: 601 VRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
RLA+E IVIP G+ VELLPR ++ Q ELVE Y+L + + G E N RL+I P
Sbjct: 524 ARLAVEQIVIPKGQPVELLPRSPQVRRMQHELVEHYRLKSNSFGEEPNRRLRIYP 578
>gi|186685424|ref|YP_001868620.1| single-stranded nucleic acid binding R3H domain-containing protein
[Nostoc punctiforme PCC 73102]
gi|186467876|gb|ACC83677.1| single-stranded nucleic acid binding R3H domain protein [Nostoc
punctiforme PCC 73102]
Length = 577
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 275/595 (46%), Positives = 369/595 (62%), Gaps = 63/595 (10%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L++LP +++ L H + L+EVV+DLGR+P ARFP+ +SE V E +
Sbjct: 6 DLQKLLDILPQDLQQVLESHPKRDSLVEVVLDLGRRPEARFPNQAEYLSEIPVTQEQIDD 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG F DNR+GI+++LHRISAIRNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 CIQRVGIFGGDNRAGIEQTLHRISAIRNRTGKIIGLTCRVGRAVFGTIGMIRDLVETGKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGDV H IGRARRMQV +
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADDLHKRVVIIDTSNEIAGDGDVAHPAIGRARRMQVAH 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PEQQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 246 TLADLVGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMLERQRWVVHESVADTVD 305
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
+L G+ + R +D + G +L + + ++ + E+S
Sbjct: 306 NLLRGRQATPQTRTVDDQ------------GKVAVTRQLAVVNGRGGQLGTVEESFPPAR 353
Query: 460 ASNQFKN-------------RSIKRS---------------------VRKPSP-----PV 480
ASN +++ R RS R+P P P+
Sbjct: 354 ASNGWRSSGQMVALPQLPVERVTGRSEFDRLLDESFNYSESIDLDAATRQPGPNGEDLPL 413
Query: 481 CVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLP 540
VY Y + L QV V+ L + +T DI +ADAILA S +K + +R +AK +P
Sbjct: 414 HVYPYGVSRHQLEQVISVLTL--PVVLTKDIDSADAILALRSHVKNHAKLRQMAKARHVP 471
Query: 541 VFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEE 600
+ +IKS+T+ Q+ + +R +L M+ + T D+E++ + +E+DALEE
Sbjct: 472 IHMIKSSTIPQITRGLRRLLNMDD--------PEMTDDLELQ--LFLHSGSDDEMDALEE 521
Query: 601 VRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
RLA+E IVIP G+ VELLPR ++ Q ELVE Y+L + + G E N RL+I P
Sbjct: 522 ARLAVEQIVIPKGQPVELLPRSPQVRKMQHELVEHYRLKSHSFGEEPNRRLRIYP 576
>gi|86610056|ref|YP_478818.1| R3H domain-containing protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558598|gb|ABD03555.1| R3H domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 639
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 278/617 (45%), Positives = 373/617 (60%), Gaps = 75/617 (12%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L++LP+ +R L H L L+EVV+DLGR+P ARFP + E ++ DL
Sbjct: 36 DLSKLLDILPAPIRERLEQHPHLDRLVEVVLDLGRRPEARFPGFADYLLEDVITRADLDQ 95
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
IS+VG+FS DNR+GI +LHRISAIRNR+ +IGLTCRVGR V G +I DLVE G S
Sbjct: 96 VISRVGEFSSDNRAGIASTLHRISAIRNRQGTIIGLTCRVGRCVIGVISMIRDLVEQGRS 155
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGDVPH GIGRARRMQV +
Sbjct: 156 MLLLGRPGVGKTTALREIARVLADELGKRVVIIDTSNEIAGDGDVPHPGIGRARRMQVAS 215
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE ++IDEIGTELEALA+ TIA+RGVQLV TAHG IDN++KNP
Sbjct: 216 PELQHKVMIEAVENHMPEVVVIDEIGTELEALASRTIAERGVQLVATAHGNRIDNLIKNP 275
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI+SVTLGDEEA++R QK++LERK PPTF A+EM+ R+ +H + ATVD
Sbjct: 276 TLSDLVGGIQSVTLGDEEARRRGSQKSVLERKAPPTFEIAIEMLERSRWVIHEDVAATVD 335
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKV--------TPILRG--------------------- 430
+L + PL + R +D EH + + V P L G
Sbjct: 336 RLLRNREPLTQTRSLD-EHGQVVIVRSTAGANGRPALSGPQWPPAGSTISAARERGGWQR 394
Query: 431 --------SYPEESELTINEDKSAEMESDEDS-----------------EDEDYASNQ-- 463
S P ES + +E EDS ++ S++
Sbjct: 395 SGRMEALPSEPLESRSQQQGESGLLLERREDSVPLTPAGSRPAAQVVAESKAEFGSDEEE 454
Query: 464 ---FKNRSIKRSVRKPSP--PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAIL 518
++ ++ + R+ +P P+ +Y Y + L QV + + L DVT D+ AD +L
Sbjct: 455 DLDWEGSALAPTGRQQNPDGPLMIYPYGVSRFYLEQVIQTLKL--SADVTKDLDEADIVL 512
Query: 519 ASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSD 578
A S+++ I+ +A Q+P+ +K+NT+ + +A+R IL +ES S SD
Sbjct: 513 ALRSQVRSRSKIQQMAHSRQIPIHTVKANTLIALARALRHILNIES-------EEGSDSD 565
Query: 579 IEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQL 638
+E+ R + +E +ALEE RLA+E IVIP + VELLPR I Q +LVE Y L
Sbjct: 566 LELF----IRASSGDETEALEEARLAVEQIVIPKSQPVELLPRSPLIRKLQHQLVEHYHL 621
Query: 639 AAENSGTELNPRLQILP 655
A++ G E N RL+I P
Sbjct: 622 RAQSFGEEPNRRLRIYP 638
>gi|427711502|ref|YP_007060126.1| hypothetical protein Syn6312_0350 [Synechococcus sp. PCC 6312]
gi|427375631|gb|AFY59583.1| hypothetical protein Syn6312_0350 [Synechococcus sp. PCC 6312]
Length = 571
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 269/570 (47%), Positives = 359/570 (62%), Gaps = 27/570 (4%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L++LP ++ L H DL+E+V+DLGR P ARF G +S+ V EDL++
Sbjct: 14 DLPQLLDILPHYLQATLRDHIHREDLLEIVLDLGRPPQARFVKGSEDLSQTPVSREDLEY 73
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+ +VG FS DNR+GI+R+LHRISAIRNR+ +IGLTCRVGRAV G+ +I DLVE S
Sbjct: 74 CVQRVGQFSGDNRAGIERTLHRISAIRNRQGTIIGLTCRVGRAVFGTIGLIRDLVESEQS 133
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +RE+AR+LADD KRVVI+DTSNEI GDGD+PH +GRARRMQV
Sbjct: 134 ILLLGRPGVGKTTALREMARVLADDLHKRVVIIDTSNEIAGDGDIPHPALGRARRMQVAR 193
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMP+ I+IDEIGTELEALAA TIA+RGVQL+GTAHG ++N++KNP
Sbjct: 194 PELQHQVMIEAVENHMPQVIVIDEIGTELEALAARTIAERGVQLIGTAHGNRLENLIKNP 253
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI+SVTLGD+EA++R QK++LERK PPTF AVEM+ R VH + TVD
Sbjct: 254 TLADLVGGIQSVTLGDDEARRRGTQKSVLERKAPPTFPIAVEMLERERWVVHDNVAETVD 313
Query: 400 AILAGKLPLFEVRQMDAE----------HHEPLKVTPILRGSYPEESELTINEDKSAEME 449
+L G P + R ++ + L++ + GS +ES +
Sbjct: 314 QLLRGHTPNPQTRSVNENGEVVITQAPPEAKKLEIKTVPLGSEWKESNWRASGQIYPLPA 373
Query: 450 SDEDSEDEDYASNQFKNRSIKRSVRKPSP---PVCVYTYRILEADLLQVAKVMGLEDEID 506
+ + DY +S S P+ P+ VY Y + L Q + L I
Sbjct: 374 TPSERSRPDYEFASLLEQSETLSPLGPNGEELPIHVYPYAVSRHHLEQAINTLNL--PIV 431
Query: 507 VTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFG 566
VT +I TAD IL S +K +R +A H +PV IK+N+MAQ+V+ ++ +LGME
Sbjct: 432 VTKEIDTADVILTLRSHLKTQSKLRHLAHLHHIPVHTIKANSMAQIVRGLQHLLGME--- 488
Query: 567 TISKLPNKSTSD-IEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEI 625
S +D + + AP +EI+ALEE RLA+E IVIP + VELLPR + I
Sbjct: 489 ------EPSPADGVNLALFAPTGND--DEIEALEEARLAVEKIVIPKKQPVELLPRSASI 540
Query: 626 VARQLELVESYQLAAENSGTELNPRLQILP 655
Q EL+E Y+L +++ G E RL+I P
Sbjct: 541 RRIQHELIEHYRLTSQSFGEEPYRRLRIYP 570
>gi|284929559|ref|YP_003422081.1| hypothetical protein UCYN_10250 [cyanobacterium UCYN-A]
gi|284810003|gb|ADB95700.1| uncharacterized conserved protein [cyanobacterium UCYN-A]
Length = 590
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 279/598 (46%), Positives = 369/598 (61%), Gaps = 42/598 (7%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV 146
P S+ + EL L++LP + + H E LIEVVMDLGR P ARFP
Sbjct: 5 PQQNSSQPIQINDELNQLLDVLPPNICHYIKNHSECNHLIEVVMDLGRLPEARFPEYSVY 64
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS 206
+ ++ DL++ I K+G FS DNR+GI+++LHRISAIRNRK +IGLTCRVGRAV G+
Sbjct: 65 LGATLISATDLEYTIQKIGAFSSDNRAGIEKTLHRISAIRNRKGSIIGLTCRVGRAVFGT 124
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
II DL+E G SIL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GD DVPH
Sbjct: 125 ISIIKDLIETGKSILLLGRPGVGKTTALREIARVLADDFHKRVVIIDTSNEIAGDSDVPH 184
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
S IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGT
Sbjct: 185 SSIGRARRMQVSAPELQHRVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGT 244
Query: 327 AHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
AHG I+N++KNP+L LVGGI+SVTLGDEEAK+R QKT+LERK PPTF A+E++ R
Sbjct: 245 AHGNEIENLMKNPTLSDLVGGIQSVTLGDEEAKRRGCQKTVLERKAPPTFEIAIEILERQ 304
Query: 387 ECRVHHRLDATVDAILAGKLPLFEVR------QMDAEH-------------HEPLKVTPI 427
+ +H + +D++L + P E+R ++ +H H P V
Sbjct: 305 KWNIHQDVACAIDSLLRNRKPNTEIRTVSQNGEVSIDHQKSNDEQLLKTFEHNPFNVVTQ 364
Query: 428 LRGSYPEESELTIN--EDKSAEM--ESDEDSEDEDYASNQFKNRSIKRSVRKPSP----- 478
+G + I E KS + E+ E D + QF ++ + ++ P
Sbjct: 365 PKGWRASGKMVPIPTLESKSVDKLNETLEFDRLLDASWYQFYDKDKEDKMKISGPNGEDL 424
Query: 479 PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQ 538
P+ +Y Y I L QV K++ L I VT D+ AD ++A S +K +R VAK Q
Sbjct: 425 PIHIYPYGIGRFQLEQVIKILRL--PIVVTKDLDNADVVIALRSYLKNQSKLRQVAKMRQ 482
Query: 539 LPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIED-DAPKRKPTLEEIDA 597
+P+ IKSNT+ Q+ + ++ +LG+ T EI D + +E++A
Sbjct: 483 IPIHGIKSNTVPQITRTLQKLLGI-----------NETQVSEIRDLHLFTKGDEDDELEA 531
Query: 598 LEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
LEE RLAIE IV+P + VELLPR +++ Q EL+E Y L +++ G E N RL+I P
Sbjct: 532 LEEARLAIEQIVLPKCQPVELLPRSAKVRGMQHELIEHYHLHSDSFGEEPNRRLRIYP 589
>gi|428222285|ref|YP_007106455.1| hypothetical protein Syn7502_02321 [Synechococcus sp. PCC 7502]
gi|427995625|gb|AFY74320.1| hypothetical protein Syn7502_02321 [Synechococcus sp. PCC 7502]
Length = 588
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 271/586 (46%), Positives = 366/586 (62%), Gaps = 42/586 (7%)
Query: 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHA 160
LE LE+LP ++ + + +L L+EVVMDLGR P AR+ + +SE + DL
Sbjct: 13 LEQLLEILPISIKTSIEEYGQLDQLVEVVMDLGRSPEARYFNETRYLSEIPISQADLNSC 72
Query: 161 ISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI 220
I KVG+FS DNR+GI+R+LHRISA+RNRK ++GLTCR+GRA+ G++ +I D VE G SI
Sbjct: 73 IEKVGEFSGDNRAGIERTLHRISAMRNRKGVIVGLTCRIGRAIYGTSAMIRDFVETGKSI 132
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNV 280
L++G PG+GKTT +REIAR+LAD+ KRVVI+DTSNEI GDGD+PH IGR+RRMQV
Sbjct: 133 LLLGRPGMGKTTALREIARVLADEINKRVVIIDTSNEIAGDGDIPHPAIGRSRRMQVATP 192
Query: 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPS 340
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQL+GTAHG + N++KNP+
Sbjct: 193 ELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLIGTAHGNQLANLIKNPT 252
Query: 341 LQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDA 400
L LVGGI+SVTLGDEEA++R QK+ILERK PPTF A+EM R + VH + T+D
Sbjct: 253 LSDLVGGIQSVTLGDEEARRRGTQKSILERKAPPTFDIAIEMTERYKWIVHKDVAETIDG 312
Query: 401 ILAGKLPLFEVRQMDAE-----HHEPLKV-----TPILRG------------SYPE-ESE 437
+L G+ P F+VR +D E E K+ PI RG YP
Sbjct: 313 LLRGREPAFQVRAVDLEGKVNVTEETPKIPELVKNPISRGWRSTGRMEPLPLDYPAPRKA 372
Query: 438 LTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSV--------RKPSPPVCVYTYRILE 489
++I + + E +E + + + SI S+ K +Y Y +
Sbjct: 373 VSIKHREWTDDEPEEVNGSFNSSPFSSSITSINGSLELLNVHKEEKEGEFAYIYLYAVSR 432
Query: 490 ADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTM 549
+V + L + +T D+ AD IL S ++Q+ +R VA+ LP+ VIKS+T+
Sbjct: 433 HQAEEVIDALHL--PVILTKDMDNADMILTLRSHIRQHSKLRQVAQTRSLPIHVIKSSTI 490
Query: 550 AQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIV 609
Q+ +A R +L ++ +IS + + + +D E++ALEE RLA+E IV
Sbjct: 491 PQITRAFRRMLQIDEPNSISPVNDLTLFAYGDSED---------EMEALEEARLAVEQIV 541
Query: 610 IPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
IP G+ VELLPR +EI Q ELVE Y L + + GTE N RL+I P
Sbjct: 542 IPKGQPVELLPRSAEIRKMQHELVEHYHLKSSSFGTEPNRRLRIYP 587
>gi|427730839|ref|YP_007077076.1| hypothetical protein Nos7524_3698 [Nostoc sp. PCC 7524]
gi|427366758|gb|AFY49479.1| hypothetical protein Nos7524_3698 [Nostoc sp. PCC 7524]
Length = 578
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 274/588 (46%), Positives = 368/588 (62%), Gaps = 48/588 (8%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L++LP +R+ L H + L+EVV+DLGR+P ARFP+ +SE V E +
Sbjct: 6 DLQKLLDILPQDLRQILENHPKRDSLVEVVLDLGRRPEARFPNQAEYLSEIPVTQEQIDD 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG F DNR+GI+++LHRISAIRNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 CIQRVGTFGGDNRAGIEQTLHRISAIRNRTGKIIGLTCRVGRAVFGTIGMIRDLVETGKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGDV H IGRARRMQV +
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADELNKRVVIIDTSNEIAGDGDVAHPAIGRARRMQVAH 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 246 TLSDLVGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMLERQRWVVHESVADTVD 305
Query: 400 AILAGKLPLFEVRQMD-----------------AEH-------HEPLKVTPILR--GSYP 433
+L G+ P + R +D EH P++ T R G
Sbjct: 306 TLLRGRQPNPQTRTVDDQGKVSVTRQLAVVNGRGEHLTVADELSSPVRQTNGWRSSGQMV 365
Query: 434 EESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSV--RKPSPPVCVYTYRILEAD 491
L + ++ + + DE + ++ + ++ R P+ +Y Y +
Sbjct: 366 ALPALPLERERVSGRSEFDRLLDESFNYSETIDFNVNRQAGPNGEDLPLHIYPYGVSRHQ 425
Query: 492 LLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQ 551
L QV V+ L + +T DI +ADAILA S +K + +R +AK +P+ +IKS+T+ Q
Sbjct: 426 LEQVINVLTL--PVVLTKDIDSADAILALRSHVKNHAKLRQMAKARHVPIHMIKSSTIPQ 483
Query: 552 MVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKR----KPTLEEIDALEEVRLAIEY 607
+ + VR +L ++ D EI D+ + + +EIDALEE RLA+E
Sbjct: 484 ITRGVRRLLNID--------------DPEIGDERELQLFLHNGSDDEIDALEEARLAVEQ 529
Query: 608 IVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
IVIP G+ VELLPR ++ Q ELVE Y+L + + G E N RL+I P
Sbjct: 530 IVIPKGQPVELLPRSPQVRKMQHELVEHYRLKSHSFGEEPNRRLRIYP 577
>gi|427705776|ref|YP_007048153.1| single-stranded nucleic acid binding R3H domain-containing protein
[Nostoc sp. PCC 7107]
gi|427358281|gb|AFY41003.1| single-stranded nucleic acid binding R3H domain-containing protein
[Nostoc sp. PCC 7107]
Length = 578
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 275/603 (45%), Positives = 369/603 (61%), Gaps = 78/603 (12%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L++LP +R+ L H + +L+EVV+DLGR+P ARFP+ +SE V +
Sbjct: 6 DLQKLLDILPQDLRQVLENHPQRDNLVEVVLDLGRRPEARFPNQAEYLSEIPVTQAQIDD 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG F DNR+GI+++LHRISAIRNR ++IGLTCRVGRA+ G+ +I DLVE G S
Sbjct: 66 CIQRVGTFGGDNRAGIEQTLHRISAIRNRNGKIIGLTCRVGRAIFGTISMIRDLVETGKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGDV H IGRARRMQV +
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADELNKRVVIIDTSNEIAGDGDVAHPAIGRARRMQVAH 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 246 TLSDLVGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMLERQRWVVHESVADTVD 305
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDED- 458
+L G+ P + R +D G +L++ + ++ S E++
Sbjct: 306 TLLRGRQPSPQTRTVDDN------------GKVAMTRQLSVVNGRGGQLASGEETFSSGR 353
Query: 459 -----YASNQF---------KNRSIKRS--------------------VRKPSP-----P 479
AS Q + ++I +S + P P
Sbjct: 354 QPTGWRASGQMVALPPLTVEREKAIGQSEFDRLLEESFNYSDSIDFALTKNAGPNGEDLP 413
Query: 480 VCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQL 539
+ VY Y + L QV V+ L + +T DI +AD+ILA S +K + +R VAK L
Sbjct: 414 LHVYPYGVSRHQLEQVISVLTL--PVVLTKDIDSADSILALRSHVKNHAKLRQVAKARHL 471
Query: 540 PVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTL------- 592
P+ +IK++T+ Q+ + +R +L M+ + EI DD R+ L
Sbjct: 472 PIHMIKASTIPQITRGLRRLLNMD--------------EPEIADD---RELQLFLHSGSD 514
Query: 593 EEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQ 652
+EIDALEE RLA+E IVIP G+ VELLPR ++ Q ELVE Y+L + + G E N RL+
Sbjct: 515 DEIDALEEARLAVEQIVIPKGQPVELLPRSPQVRKMQHELVEHYRLKSHSFGEEPNRRLR 574
Query: 653 ILP 655
I P
Sbjct: 575 IYP 577
>gi|427417957|ref|ZP_18908140.1| hypothetical protein Lepto7375DRAFT_3694 [Leptolyngbya sp. PCC
7375]
gi|425760670|gb|EKV01523.1| hypothetical protein Lepto7375DRAFT_3694 [Leptolyngbya sp. PCC
7375]
Length = 594
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 276/607 (45%), Positives = 382/607 (62%), Gaps = 46/607 (7%)
Query: 79 RNGSVSDSPNS-ASTSRSGADI--ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRK 135
R+ +P S A+ S+S A I +L+ L +LP +R L H + LIEV++DLGR+
Sbjct: 3 RSDEYQSAPESTAALSKSSAPIHDDLDQLLSILPEGLRAPLSNHPQRSQLIEVILDLGRR 62
Query: 136 PLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGL 195
P ARFP +SEQ++ EDL+H I +VG F DNR+GI+++LHRISA+RNR +IGL
Sbjct: 63 PEARFPGKADYLSEQVISKEDLQHCIERVGAFGGDNRAGIEKTLHRISAMRNRAGTIIGL 122
Query: 196 TCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
TCRVGRAV G+ E+I DLVE G SIL++G PGVGKTT +REIAR+LADD KRVVI+DTS
Sbjct: 123 TCRVGRAVFGTVEMIRDLVEAGQSILLLGRPGVGKTTALREIARVLADDLDKRVVIIDTS 182
Query: 256 NEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST 315
NEI GDGD+PH IGRARRMQV QH VMIEAVENH PE IIIDEIGTELEALAA T
Sbjct: 183 NEIAGDGDIPHPAIGRARRMQVARPEQQHQVMIEAVENHTPEVIIIDEIGTELEALAART 242
Query: 316 IAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPT 375
IA+RGVQLVGTAHG ++N++KNP+L L+GGI++VTLGD+EA++R QK++LERK PPT
Sbjct: 243 IAERGVQLVGTAHGNQLENLIKNPTLADLIGGIQTVTLGDDEARRRGSQKSVLERKAPPT 302
Query: 376 FTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKVT-----PILRG 430
F A+EM+ R VH + ATVD +L G++ +VR + E KV+ P +
Sbjct: 303 FDMAIEMLERQRWVVHEDVAATVDHLLRGRMSETQVRTVG----ENGKVSITHELPDIVS 358
Query: 431 SYPEESELTINEDKSAEMESDEDSEDED-----------YASNQFK---NRSIKRSVRKP 476
++ +ME + A+++F+ +R + S +
Sbjct: 359 QRRTTRRTQRGWREAGQMEPVAQRVRQHGPTAPTPLPVPTANDEFQALLDRQLDTSSLEL 418
Query: 477 SPPVC--------VYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNP 528
S PV +Y Y I L V + L + +T ++G A A+LA S ++ +
Sbjct: 419 STPVGPNGEDLVPIYPYGISREQLHHVIDTLKL--PVSITKELGVAQAVLALRSHVRNHS 476
Query: 529 WIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKR 588
++ +AK QLP++ +KSNT+ Q+ +A++ +L ++ P ++ I++ R
Sbjct: 477 KLKTIAKSRQLPIYTVKSNTIPQITRALQRLLDID--------PRDQSAAIDL--SLFTR 526
Query: 589 KPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELN 648
+ +E++ALEE RLA+E IVIP G+ VELLPR ++I Q EL E Y+L + + G E N
Sbjct: 527 QGEDDELEALEEARLAVEQIVIPKGQPVELLPRSAKIRKMQHELAEHYRLKSLSFGDEPN 586
Query: 649 PRLQILP 655
RL+I P
Sbjct: 587 RRLRIFP 593
>gi|443310712|ref|ZP_21040354.1| hypothetical protein Syn7509DRAFT_00032120 [Synechocystis sp. PCC
7509]
gi|442779237|gb|ELR89488.1| hypothetical protein Syn7509DRAFT_00032120 [Synechocystis sp. PCC
7509]
Length = 576
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 272/600 (45%), Positives = 365/600 (60%), Gaps = 74/600 (12%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ +++LP +++ L H L+EVVMDLGR P ARFP+ +S+ V E L
Sbjct: 6 DLQKLIDILPIEIQQALDQHELRDSLVEVVMDLGRLPEARFPNRAEYLSQVPVSQEQLND 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG F DNR+GI+R+LHRISAIRNR ++IGLTCRVGRAV G+ ++I DLV G S
Sbjct: 66 CIERVGHFGGDNRAGIERTLHRISAIRNRTGKIIGLTCRVGRAVFGTIDMIRDLVGTGQS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGD+ H IGRARRMQV
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADELNKRVVIIDTSNEIAGDGDITHPAIGRARRMQVSR 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEA+AA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEAIVIDEIGTELEAMAARTIAERGVQLVGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGDEEA++R+ QKT+LERK PPTF AVEM R +H + TVD
Sbjct: 246 TLSDLVGGIQAVTLGDEEARRRRSQKTVLERKAPPTFEIAVEMQERQRWVIHESVADTVD 305
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINED----KSAEMESDEDSE 455
+L GK P +VR + E++++TI ++ K+A S
Sbjct: 306 NLLRGKPPTPQVR------------------TVGEDNKVTITQEQPAVKTARSNSSWQGG 347
Query: 456 DEDYASN---------------------------------QFKNRSIKRSVRKPSP---- 478
+E SN + S R P+P
Sbjct: 348 EEIIESNLTTMRSPGWRETGKMLPTPQVATGRISGVGEFDRLLEESFDRFGYSPTPGPNG 407
Query: 479 ---PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAK 535
P+ +Y Y + + L Q+ +V+ L I +T DI AD ILA S +K + +R +A+
Sbjct: 408 EDLPLHIYPYGVSRSQLDQIIEVLNL--PIVLTKDIDGADGILALRSHLKSHSKLRHIAR 465
Query: 536 FHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEI 595
Q+P+ +IK++T+ Q+ +++R +L M+ G E E R + +E+
Sbjct: 466 VRQVPIHMIKASTIPQITRSLRRLLNMDEPGLGD----------EREMSLFSRNGSEDEM 515
Query: 596 DALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
DALEE RLA+E IVIP G+ VELLPR ++ Q ELVE Y L +++ G E N RL+I P
Sbjct: 516 DALEEARLAVEQIVIPKGQPVELLPRSPKVRKMQHELVEHYHLKSDSFGDEPNRRLRIYP 575
>gi|220906040|ref|YP_002481351.1| single-stranded nucleic acid-binding R3H domain-containing protein
[Cyanothece sp. PCC 7425]
gi|219862651|gb|ACL42990.1| single-stranded nucleic acid binding R3H domain protein [Cyanothece
sp. PCC 7425]
Length = 584
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 268/579 (46%), Positives = 357/579 (61%), Gaps = 55/579 (9%)
Query: 111 RMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDD 170
+ R L H LIEVVMDLGR+P ARFP +S ++ DL + + +VG FS D
Sbjct: 26 KFRLPLSHHPRRDQLIEVVMDLGRQPEARFPGEAEYLSTDLISQADLDYCVQRVGRFSGD 85
Query: 171 NRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGK 230
NR+GI+ +LHRISA+RNR+ ++GLTCRVGRAV G+ +I DLVE G SIL++G PGVGK
Sbjct: 86 NRAGIEYTLHRISALRNRQGDIVGLTCRVGRAVFGTIGMIRDLVESGKSILLLGRPGVGK 145
Query: 231 TTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEA 290
TT +RE+AR+LAD+ +KRVVI+DTSNEI GDGD+PH IGRARRMQV +QH VMIEA
Sbjct: 146 TTALREMARVLADELLKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVARPELQHQVMIEA 205
Query: 291 VENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIES 350
VENHMPE I+IDEIGTELEALAA TIA+RGVQL+GTAHG I+N++KNP+L LVGGI+S
Sbjct: 206 VENHMPEVIVIDEIGTELEALAARTIAERGVQLIGTAHGNRIENLIKNPTLSDLVGGIQS 265
Query: 351 VTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFE 410
VTLGDEEA++R QK++LERK PPTF AVE++ R VH ++ TVD +L G++P +
Sbjct: 266 VTLGDEEARRRGSQKSVLERKAPPTFEIAVELLERERWVVHEQVAETVDHLLRGRIPTPQ 325
Query: 411 VRQMDAEH-----HEPLKVTPILRGSYPE-ESELTINEDKSA-----------EMESDED 453
+R + HE L TP G PE +S L +S E+ E
Sbjct: 326 IRTLSETGKVIITHE-LPQTP---GLVPETKSTLAAPGWRSTGQMLPLPTYRQEVSPKEP 381
Query: 454 SEDEDYASNQFKNRSIK-------RSVRKPSP-----PVCVYTYRILEADLLQVAKVMGL 501
S E +Q S+ R + P P+ VY Y + L QV + + L
Sbjct: 382 SYKEQSYFHQLLEDSLSQTEAEAFRLNKSVGPNGEDLPLHVYPYAVSRQQLEQVVQTLNL 441
Query: 502 EDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILG 561
+ +T DI AD +LA S +K + +R +A+ +P+ IK+N++ + + +R +L
Sbjct: 442 --PVVLTKDIDGADVVLALRSHLKNHAKLRHLARARHIPIHTIKANSIPHIARGLRRLLN 499
Query: 562 ME-----SFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAV 616
M+ G +S + + D EI+ALEE RLA+E IVIP G+ V
Sbjct: 500 MDEPDAPEVGELSLYAPRGSGD---------------EIEALEEARLAVEQIVIPKGQPV 544
Query: 617 ELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
ELLPR + I Q EL+E Y+L + + G E N RL+I P
Sbjct: 545 ELLPRSANIRKMQHELIEHYRLTSRSFGEEPNRRLRIYP 583
>gi|378787319|gb|AFC39950.1| hypothetical protein [Porphyra umbilicalis]
Length = 565
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 260/575 (45%), Positives = 370/575 (64%), Gaps = 35/575 (6%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+LE LE+LP+ +R L H +LIEVVMDLGR+P ARFP +S++ + +DL +
Sbjct: 6 DLEKLLEILPNFVREPLKQHSNRKNLIEVVMDLGRRPEARFPGNPEYLSQRSISWQDLDY 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+ KVG+FS DNR+GI+++LHRIS++RNR+ +IGLTCRVGRAV G+ II DL+E G S
Sbjct: 66 CVKKVGNFSGDNRAGIEKTLHRISSMRNREGSIIGLTCRVGRAVFGTISIIRDLLEQGDS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 126 ILLLGKPGVGKTTAVREIARVLADEMEKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAR 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
++QH VMIEAVENHMPE IIIDEIGTELEALAA TIA+RGVQLVGTAHG +++++KNP
Sbjct: 186 PDLQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNHLESLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI+ VTLGD+EAK+R QK+ILERK P F A+E+ R VH +++ T+D
Sbjct: 246 TLADLIGGIQYVTLGDDEAKRRGTQKSILERKAAPAFQIAIEIHDRKVWIVHDKVEQTID 305
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTP-----ILRGSYPEESELTINEDKSAEMESDEDS 454
IL G P + RQ+ +K P +L ++ +++ + K+ + ++
Sbjct: 306 QILQGHQPFVQKRQIQDNGRILIKCYPSHSIEVLSTNFLRPQKMSSLKQKT-HVWHQKEV 364
Query: 455 EDEDYASNQFKNRS---IKRSVRKP------SPPV-----CVYTYRILEADLLQVAKVMG 500
+D+ N+ +NR + S+ P S PV +Y Y + + V +
Sbjct: 365 KDKTSDLNKLENRDTSLLSTSINTPININNQSFPVEASIQYLYAYSLSWQHIASV--ISS 422
Query: 501 LEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMIL 560
L+ I +T ++ +DAILA S++KQN +R +AK QL ++ I+++T+ Q+ +A+R IL
Sbjct: 423 LDLPIILTKELEKSDAILALRSQVKQNAKLRQIAKSRQLIIYTIQNSTVPQITRALRKIL 482
Query: 561 GMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLP 620
+ +SD+ + +K EI AL+E +LAIE I++ V+L+P
Sbjct: 483 NI-----------NISSDLNWVELCKSKK--FYEIQALQEAKLAIETIILNENSIVQLMP 529
Query: 621 RRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
R + I Q LV++YQL A + G E +L+I P
Sbjct: 530 RSAYIRKMQHNLVDNYQLRARSFGEEPYRKLRIYP 564
>gi|11465747|ref|NP_053891.1| hypothetical protein PopuCp096 [Porphyra purpurea]
gi|1723347|sp|P51281.1|YCF45_PORPU RecName: Full=Uncharacterized protein ycf45; AltName: Full=ORF565
gi|1276747|gb|AAC08167.1| trnS (chloroplast) [Porphyra purpurea]
Length = 565
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 259/581 (44%), Positives = 362/581 (62%), Gaps = 47/581 (8%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+LE LE+LP +R L H +LIEVVMDLGR+P ARFP +S++ + +DL +
Sbjct: 6 DLEKLLEILPHFVREPLKQHSNRKNLIEVVMDLGRRPEARFPGNPEYLSQRSISWQDLDY 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+ KVG+FS DNR+GI+++LHRIS++RNR+ +IGLTCRVGRAV G+ II DL+E G S
Sbjct: 66 CVKKVGNFSGDNRAGIEKTLHRISSMRNREGSIIGLTCRVGRAVFGTISIIRDLLEQGDS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+L+D+ KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 126 ILLLGKPGVGKTTAVREIARVLSDEMEKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAQ 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
++QH VMIEAVENHMPE IIIDEIGTELEALAA TIA+RGVQLVGTAHG +++++KNP
Sbjct: 186 PDLQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNYLESLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI+ VTLGD+EAK+R QK+ILERK P F A+E+ R VH +++ T+D
Sbjct: 246 TLADLIGGIQYVTLGDDEAKRRGTQKSILERKAAPAFQIAIEIHDRKAWIVHEKVEETID 305
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESE--LTINEDKSAEMES------- 450
IL G P + RQ+ IL YP +S L+ N +M S
Sbjct: 306 QILQGHQPFVQKRQIQDNGR-------ILIKCYPSQSTEVLSTNSSSLQKMSSLKQKTHF 358
Query: 451 --DEDSEDEDYASNQFKNRSIKRSVRKPSPPVCV--------------YTYRILEADLLQ 494
+ +++ + N+ +NR + PV + Y Y + +
Sbjct: 359 LQQREVKNKTFDLNKLENRDTSLLSTTINTPVNINNHSFQVEASIQYLYAYSLSWQHITS 418
Query: 495 VAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVK 554
V + L+ I +T +I +DAILA S++KQN +R +AK Q+ ++ I+++T+ Q+ +
Sbjct: 419 V--ISALDLPIILTKEIEKSDAILALRSQVKQNTKLRQIAKSRQIIIYTIQNSTVPQITR 476
Query: 555 AVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGE 614
A+R IL + ++SD+ +K EI AL+E +LAIE I++
Sbjct: 477 ALRKILNI-----------NTSSDLNWVKLCKSKK--FYEIQALQEAKLAIEIIILNENS 523
Query: 615 AVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
V+L PR + I Q L+++YQL A + G E +L+I P
Sbjct: 524 IVQLTPRSAYIRKMQHNLIDNYQLRARSFGEEPYRKLRIYP 564
>gi|414079590|ref|YP_007001014.1| single-stranded nucleic acid binding R3H domain-containing protein
[Anabaena sp. 90]
gi|413972869|gb|AFW96957.1| single-stranded nucleic acid binding R3H domain-containing protein
[Anabaena sp. 90]
Length = 583
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 278/602 (46%), Positives = 370/602 (61%), Gaps = 71/602 (11%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L++LP ++++L H +L+EVV+DLGR+P ARFP +SE V +
Sbjct: 6 DLQKLLDILPQDLQQKLEHHPNGDNLVEVVLDLGRRPEARFPHVAEYLSETPVTQAQIDD 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG+F DNR+GI+++LHRISAIRNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 66 CIQRVGNFGGDNRAGIEQTLHRISAIRNRSGKIIGLTCRVGRAVFGTIAMIRDLVETGQS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGDV H IGRARRMQV
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADDLNKRVVIIDTSNEIAGDGDVAHPAIGRARRMQVSK 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 246 TLSDLVGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMLERQRWVVHECVADTVD 305
Query: 400 AILAGKLPLFE------------VRQMDAEHHEPLKVTPILRGSYPEESELTINED---K 444
+L G+ P + VRQ+ + + EES L+ +
Sbjct: 306 TLLRGRQPTPQTRTVDDNGKVGVVRQLAVVNGGNSNGNGNGHIANVEESFLSAQPNGWRS 365
Query: 445 SAEM------------------------ESDEDSEDEDYASNQFKNRSIKRSVRKPSPPV 480
S +M ES SE D+AS + + P+
Sbjct: 366 SGQMVALPPLSLDRERPTGRSEFDRLLDESFNYSESFDFASRK------QAGPNGEDLPL 419
Query: 481 CVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLP 540
+Y Y + L QV V+ L + +T D+ +ADAILA S +K + +R +AK +P
Sbjct: 420 HIYPYGVSRQQLEQVINVLTLP--VILTKDLDSADAILALRSHVKNHAKLRQMAKARHVP 477
Query: 541 VFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTL-------E 593
+ VIKS+T+ Q+ +++R +L ++ D +I DD R+ L +
Sbjct: 478 IHVIKSSTIPQITRSLRRLLNID--------------DPDIGDD---RELQLLLHNGGDD 520
Query: 594 EIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQI 653
E+DALEE RLA+E IVIP G+ VELLPR S++ Q ELVE Y+L +++ G E N RL+I
Sbjct: 521 EMDALEEARLAVEQIVIPKGQPVELLPRSSQVRKMQHELVEHYRLKSDSFGDEPNRRLRI 580
Query: 654 LP 655
P
Sbjct: 581 YP 582
>gi|159475499|ref|XP_001695856.1| hypothetical protein CHLREDRAFT_118675 [Chlamydomonas reinhardtii]
gi|158275416|gb|EDP01193.1| predicted protein [Chlamydomonas reinhardtii]
Length = 551
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 259/566 (45%), Positives = 350/566 (61%), Gaps = 37/566 (6%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
EL ++LLP+ +R L H ++ +L+EVVMDLGR PLARFP GD +S + EDL+
Sbjct: 1 ELMKLVQLLPASVRAALEDHPQMLELLEVVMDLGRPPLARFPGGDVKLSTAAITAEDLEF 60
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
A+ +VG+F DNR+GIDR+LHRIS +RNR ++IGLTCRVGRA+ GSA+++ DLV G S
Sbjct: 61 AVRQVGEFGGDNRAGIDRTLHRISCMRNRTGRIIGLTCRVGRAIKGSAQMVRDLVLSGAS 120
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT IRE++RMLAD+ KRVVIVDTSNEIGGDGD+PHSGIGRARRMQV +
Sbjct: 121 ILLLGRPGVGKTTAIREVSRMLADECTKRVVIVDTSNEIGGDGDIPHSGIGRARRMQVAH 180
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH VMIEAVENHMP+ I+IDEIGT E AA TIAQRGVQLV TAHG ++N++KNP
Sbjct: 181 PEAQHRVMIEAVENHMPQVIVIDEIGTSEECGAARTIAQRGVQLVATAHGNELENVIKNP 240
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
L LVGGI+SVTLGDEEAK+R VQK+ILER PPTF +EM+ RT+ R H + VD
Sbjct: 241 QLADLVGGIQSVTLGDEEAKRRGVQKSILERAAPPTFDVCIEMLERTKWRAHLDVGQAVD 300
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
+LAG +VR+ A+ L PI R + E + + +
Sbjct: 301 MVLAGGESGGQVREKAAD-GTILNARPIPRPEFRAEVRVLTARRRCVWLP---------- 349
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLED----------EIDVTD 509
++ R+ S+ PS P A L V D +I +T
Sbjct: 350 VADAPPLRAPGNSLAAPSLPAPTPAPLPGSARSLACCPVQHRRDCPAAAVPVSTQIFITS 409
Query: 510 DIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTIS 569
+ ADA+LA +++K N +R +A+ +P++ +K++ A +VKA R +LG++ +
Sbjct: 410 SLANADAVLALRAKVKHNAELRAMARESSVPIYAVKTSGSANLVKAFRTLLGIDPSAGGA 469
Query: 570 KLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQ 629
P + EE ALEE ++A+ IVIP + VEL+PR ++ Q
Sbjct: 470 FGPGSDS----------------EEGPALEEAQVAVTEIVIPLHQPVELMPRARSVLEAQ 513
Query: 630 LELVESYQLAAENSGTELNPRLQILP 655
++L+E Y+L+ E G R++ILP
Sbjct: 514 IKLLERYKLSHEIVGAGAEARIRILP 539
>gi|145341893|ref|XP_001416037.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576260|gb|ABO94329.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 552
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 255/567 (44%), Positives = 363/567 (64%), Gaps = 32/567 (5%)
Query: 104 FLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK 163
L+ P R+RR L +L EVV+DLGR P ARFP GD I +++V +EDL ++K
Sbjct: 1 LLDAAPERVRRALAEDARRLELTEVVLDLGRLPKARFPDGDATIGDELVTYEDLNRMMTK 60
Query: 164 VGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEG------- 216
VGD DNR+GI+ +LHRISAI+NR +VIG TCRVGRA++GSAE+I D+++
Sbjct: 61 VGDVGRDNRAGINGTLHRISAIKNRYGKVIGATCRVGRAISGSAELIRDVLDAETSVTTF 120
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
SIL++G PGVGKTT IREI+R+L+D+H +RVVIVDTSNEIGGDGDVPH GIG ARRMQ
Sbjct: 121 NNSILLLGRPGVGKTTAIREISRILSDEHSRRVVIVDTSNEIGGDGDVPHRGIGGARRMQ 180
Query: 277 VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336
VPN + QH V+IEAVENH P+T+++DEIGT+ EA AA TI++RGVQ++GTAHG T++N++
Sbjct: 181 VPNASEQHLVLIEAVENHTPQTVVVDEIGTQQEADAAQTISERGVQMIGTAHGHTLENVL 240
Query: 337 KNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDA 396
KNP+L L+GG+ SVTLGD+EA++R VQK++LER GPPTFT AVEM+ RVH + A
Sbjct: 241 KNPALCDLIGGVVSVTLGDDEARRRGVQKSVLERAGPPTFTIAVEMLDIGTWRVHTDVAA 300
Query: 397 TVDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSED 456
+VDA+LAG+ P+ E+R ++ E VT +SEL E SA +
Sbjct: 301 SVDALLAGQSPMTELRVLN----EDGTVT------TEADSELAALEIASASRRRSSSTTQ 350
Query: 457 EDYASNQFK--------NRSIKRSVRKPSPP--VCVYTYRILEADLLQVAKVMGLEDEID 506
+ + +F+ N PP + V+ +++ L +V + M L D +
Sbjct: 351 QFVDNTRFELGGEDVIVNDVEDDEDDNTCPPHALRVFPFKVSRDALERVMESMDLGDRVC 410
Query: 507 VTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFG 566
+ D + A ++A S++K + W+R A+ +P++ ++++ AQ+V+A++ +LG+ G
Sbjct: 411 LVDLLEDASVVIAPKSQVKTSTWLRHAARARGMPIYAVRADNSAQLVRALQAMLGIT--G 468
Query: 567 TISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIV 626
S + E+ + +E DALEEVR+A+E +VIP E VELLPR I+
Sbjct: 469 ASDGFNGGSGAQ---ENRQRATTSSADETDALEEVRMAVEQLVIPHREPVELLPRSGRII 525
Query: 627 ARQLELVESYQLAAENSGTELNPRLQI 653
Q LV++Y L+ G RL+I
Sbjct: 526 EMQQALVDTYMLSHSAVGEGTERRLRI 552
>gi|443474815|ref|ZP_21064783.1| single-stranded nucleic acid binding R3H domain-containing protein
[Pseudanabaena biceps PCC 7429]
gi|443020404|gb|ELS34366.1| single-stranded nucleic acid binding R3H domain-containing protein
[Pseudanabaena biceps PCC 7429]
Length = 591
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 269/594 (45%), Positives = 369/594 (62%), Gaps = 54/594 (9%)
Query: 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHA 160
L+ L++LP R++ L + L L+E+VMDLGR P AR+ +++ + EDL
Sbjct: 12 LDQLLDILPPRIKNSLELCGGLEQLVEIVMDLGRLPEARYFDTTKYLTDDPITKEDLAIC 71
Query: 161 ISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI 220
+ +VG+F DNR+GI+R+LHRISAIRNRK ++IGLTCRVGRAV G+ +I DLVE G SI
Sbjct: 72 VQQVGEFGGDNRAGIERTLHRISAIRNRKGEIIGLTCRVGRAVYGTIAMIRDLVETGKSI 131
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNV 280
L++G PG+GKTT +REIAR+LADD KRVVI+D+SNEI GDGD+PH IGRARRMQV
Sbjct: 132 LLLGKPGMGKTTALREIARVLADDLNKRVVIIDSSNEIAGDGDIPHPAIGRARRMQVSQP 191
Query: 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPS 340
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG + N++KNP+
Sbjct: 192 ELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQLANLIKNPT 251
Query: 341 LQILVGGIESVTLGDEEAKKRKV-QKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
L L+GGI+SVTLGDEE ++R + QK+ILERK PTF AVEM R VH + T+D
Sbjct: 252 LSDLIGGIQSVTLGDEEMRRRGLPQKSILERKAQPTFDIAVEMWERYRWAVHTDVAGTID 311
Query: 400 AILAGKLPLFEVRQMDAEHH----------------------------EPLKVTPILRGS 431
+L + P ++R + +PL + P ++
Sbjct: 312 MLLRDRDPGRQIRAVSDAGEVTTTEEKPKNPEVMRNPAVKGWRATGKIKPLPIDPQVQ-M 370
Query: 432 YPEESELTINEDKSAEMESD--------EDSEDEDYASNQFKNRSIKRSVRKPSPPVCVY 483
E ++LT D++ + D E +E +F + + ++R+ + VY
Sbjct: 371 RSEVADLTSKIDRNIDRNIDRIDRNTVAELNESIVEEEEEFGDLASYDTMRERFGTLNVY 430
Query: 484 TYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFV 543
Y + QV + + L I++T D+ AD +LA S+++ + +R VA+ Q+P+
Sbjct: 431 LYGVSRHQTEQVVQSINL--PIEITKDLDEADIVLALRSQIRTSSKVRQVAEARQIPIHA 488
Query: 544 IKSNTMAQMVKAVRMILGMES--FGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEV 601
IK++T+ Q+ +A+R IL ++ TIS L + D E +EI+ALEE
Sbjct: 489 IKTSTLPQITRALRRILHIDESPTDTISDLNMFAYGDSE------------DEIEALEET 536
Query: 602 RLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
RLA+E IVIP G+ VELLPR S I Q ELVE YQL +E+ G+E N RL+I P
Sbjct: 537 RLAVEQIVIPKGQPVELLPRSSIIRRMQHELVEHYQLRSESYGSEPNRRLRIFP 590
>gi|332711942|ref|ZP_08431872.1| hypothetical protein LYNGBM3L_69500 [Moorea producens 3L]
gi|332349270|gb|EGJ28880.1| hypothetical protein LYNGBM3L_69500 [Moorea producens 3L]
Length = 647
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 268/583 (45%), Positives = 369/583 (63%), Gaps = 39/583 (6%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L++LP+ +R L H E LIEV+MDLGR P RF +S+Q V E + H
Sbjct: 76 DLPKLLDILPAEIRSLLEQHAERDSLIEVIMDLGRFPEVRFRDRAEYLSDQPVTIEQINH 135
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+ +VG FS DNR+GI+ +LHRISAIRNR ++IGLTCRVGRAV G+ +I DLVE G S
Sbjct: 136 CVERVGSFSGDNRAGIEGTLHRISAIRNRPGEIIGLTCRVGRAVFGTIGMIRDLVETGKS 195
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGD+PH IGRARRMQV +
Sbjct: 196 ILMLGRPGVGKTTALREIARVLADELDKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAS 255
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH VMIEAVENHMPE I+IDEIGTELEA AA TIA+RGV LVGTAHG I+N++KNP
Sbjct: 256 PEHQHQVMIEAVENHMPEVIVIDEIGTELEAQAARTIAERGVMLVGTAHGNRIENLIKNP 315
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R VH + TVD
Sbjct: 316 TLSDLVGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAVEMLERKRWVVHESVADTVD 375
Query: 400 AILAGKLPLFEVRQMDAEHHEPLK--------VTPILRGSYPEESELTINEDK----SAE 447
+L G+ P VR D + TP+ S + T ++ K S +
Sbjct: 376 NLLRGRQPNPPVRTEDENGKVTITRELPSAPVATPLNGRSRGHLTLTTPSQPKGWRSSGQ 435
Query: 448 ME---------SDEDSEDEDYASNQFKNRS-IKRSVRKPSP-----PVCVYTYRILEADL 492
M+ + E+S E + + + + + ++ P P+ VY Y I +
Sbjct: 436 MKPLSLQEPEPARENSMFEQLLAESWSQQELLGQGMQMLGPNGEDLPLQVYPYGISRHQI 495
Query: 493 LQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQM 552
QV +++ L + +T ++ TAD +L S +K + ++ +AK Q+P+ IK++++ Q+
Sbjct: 496 EQVIQILNL--PVVLTKNMDTADVVLGLRSHVKSHSKLKSIAKSRQIPIHAIKASSIPQI 553
Query: 553 VKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPG 612
+A+R +L M+ +P+ +D+E+ + + +EI+ALEE RLA+E IVIP
Sbjct: 554 TRALRRLLHMDD----PTIPD--AADLELF----AQNGSEDEIEALEEARLAVEQIVIPK 603
Query: 613 GEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
G+ VELLPR ++ Q ELVE Y+L + + G E N RL+I P
Sbjct: 604 GQPVELLPRSPKVRKMQHELVEHYRLKSSSFGDEPNRRLRIYP 646
>gi|356534378|ref|XP_003535732.1| PREDICTED: uncharacterized protein ycf45-like [Glycine max]
Length = 568
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/319 (77%), Positives = 262/319 (82%), Gaps = 19/319 (5%)
Query: 37 ITSFSSSFRRTRRARKTFVSQKPTPPSIHPPTVRRPSDWAPPRNGSVSDSPNSASTSRSG 96
I+ F SS R R R P P +RRPSD GS S STSR
Sbjct: 9 ISHFISSLRPPRFPRNGI-------PCTASPEIRRPSDRF---YGS------SPSTSRPE 52
Query: 97 ADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHED 156
+L LFLELLP +RREL +H E+G LIEVVMDLGRKPLARFPSGDWVISEQ + ED
Sbjct: 53 ---DLNLFLELLPLTLRRELYLHTEIGGLIEVVMDLGRKPLARFPSGDWVISEQPIAQED 109
Query: 157 LKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEG 216
L+HAISKVG+FSDDNRSGIDRSLHRISAIRNRKMQ+IGLTCRVGRAV GSAEII DLVE
Sbjct: 110 LRHAISKVGEFSDDNRSGIDRSLHRISAIRNRKMQIIGLTCRVGRAVGGSAEIIRDLVED 169
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
GGSILVIGPPGVGKTTLIREIARMLAD+ KRVVIVDTSNEIGGDGDVPH+GIGRARR Q
Sbjct: 170 GGSILVIGPPGVGKTTLIREIARMLADEFRKRVVIVDTSNEIGGDGDVPHAGIGRARRTQ 229
Query: 277 VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336
VPNVNMQH VMIEA+ENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTI+NI+
Sbjct: 230 VPNVNMQHGVMIEAIENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIENII 289
Query: 337 KNPSLQILVGGIESVTLGD 355
KNP LQILVGGIESVTLG+
Sbjct: 290 KNPYLQILVGGIESVTLGE 308
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 173/261 (66%), Positives = 200/261 (76%), Gaps = 8/261 (3%)
Query: 434 EESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLL 493
E S+LT N+ S+E+ES +D D+D+ N S V S + VYTY+ILEADLL
Sbjct: 308 ETSDLTNNDITSSEIESSKD--DKDHPRTWSTNWSTSVPVMTRSSRMQVYTYKILEADLL 365
Query: 494 QVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMV 553
QVAKVMGLED IDVTDDIGTA+AILASSSE++QNPWIRGVAKFH +PVFVIKSNTMAQ+V
Sbjct: 366 QVAKVMGLEDVIDVTDDIGTAEAILASSSEIRQNPWIRGVAKFHHVPVFVIKSNTMAQVV 425
Query: 554 KAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGG 613
KAVRMILG+E FG K DIEIEDD PKRKP+LEEIDALEEVRLAIEYIVIPGG
Sbjct: 426 KAVRMILGLEFFGPTPKKALNECLDIEIEDDEPKRKPSLEEIDALEEVRLAIEYIVIPGG 485
Query: 614 EAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRLNKNKKSFSNSSNSGS 673
E VELLPRRSEI+ARQLELV+SYQLAAE SG++ NPRLQILPLRLN K S S +
Sbjct: 486 EPVELLPRRSEIIARQLELVQSYQLAAEKSGSDQNPRLQILPLRLNTKKPSKS------T 539
Query: 674 TSPKETLGKSLTSSDAGTSFT 694
K+T S+++ D+G +
Sbjct: 540 IGRKKTSPTSMSTGDSGNGIS 560
>gi|255090003|ref|XP_002506923.1| predicted protein [Micromonas sp. RCC299]
gi|226522196|gb|ACO68181.1| predicted protein [Micromonas sp. RCC299]
Length = 624
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 256/599 (42%), Positives = 368/599 (61%), Gaps = 54/599 (9%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQI-VKHEDLK 158
EL+ ++LLP R+R L H+ L+EVV+DLGR P+ARF GD ++ + + + ++D++
Sbjct: 30 ELDALIDLLPPRVRGALATHQRKLQLLEVVLDLGRLPIARFADGDEILGDGLPLDYDDIE 89
Query: 159 HAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGG 218
A+ VG+ DNR+GI+R+LHRIS IRNRK V+GLT RVGRA+ GSA+++ DL+ G
Sbjct: 90 RAMDTVGEVGGDNRAGINRTLHRISVIRNRKGGVVGLTARVGRAIEGSADLVRDLLASGA 149
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
S+L++G PGVGKTT IREI+R+L++++ +RVV+VDTSNEIGGDGD+PH GIG +RRMQVP
Sbjct: 150 SVLLLGRPGVGKTTAIREISRILSEEYGRRVVVVDTSNEIGGDGDIPHPGIGGSRRMQVP 209
Query: 279 NVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKN 338
+ QH V+IEAV+NH P+ +I+DEIGTELEA AA TI+QRGVQ++ TAHG T++N++KN
Sbjct: 210 VPDRQHDVLIEAVQNHTPQVVIVDEIGTELEAKAARTISQRGVQMIATAHGHTLENLLKN 269
Query: 339 PSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATV 398
P L LVGG+ SVTLGD+EA++R+VQK++LER+GPPTF AVEM+ RVH + V
Sbjct: 270 PLLNDLVGGVVSVTLGDDEARRRRVQKSVLEREGPPTFGAAVEMVDIGHWRVHLDVGVAV 329
Query: 399 DAILAGKLPLFEVRQMDAEHHEPLKVTPIL-------RGSYPEESELTINEDKSAEMESD 451
D +LAG P E+R +DA+ ++V P L GSY +
Sbjct: 330 DTLLAGYAPHVELRTLDADTG-AVRVQPYLGGGEIQNGGSYAAMFGAGGAVSGGVGFGAS 388
Query: 452 ED--------SEDEDYASNQF---KNRSIKRSVRKPSPP----VCVYTYRILEADLL-QV 495
D S D +++ F K RS P +Y + L+ D+L +V
Sbjct: 389 VDNTLGSGGPSFWGDVSASGFSFPKAAPTGRSTATDDPDDQSVFRIYPHE-LDCDVLEEV 447
Query: 496 AKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKA 555
+ LED + +TD + A A+LA + +K W+R A+ +P++ +K M Q+ +A
Sbjct: 448 IASLELEDRVVLTDQLEDASAVLAVKARVKGATWLRHAARARGMPIYALKVEGMPQLARA 507
Query: 556 VRMILGMESFGTISKLPNKSTSDIEIED-------------------DAPKRKPTLEEID 596
++ +LG+ NKST D + D P +EID
Sbjct: 508 MQAMLGLNGL-------NKSTDDRDAAAADASMADAAAAAAARGTGRDVSSVTPA-DEID 559
Query: 597 ALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELV-ESYQLAAENSGTELNPRLQIL 654
ALEEVR+A+E +VIP E VELLPR ++ Q +L+ + Y+L E G + R++IL
Sbjct: 560 ALEEVRMAVEQLVIPHQEPVELLPRDERLLKMQADLITDEYRLQYEECGEGSSRRIKIL 618
>gi|124023992|ref|YP_001018299.1| ATPase AAA [Prochlorococcus marinus str. MIT 9303]
gi|123964278|gb|ABM79034.1| AAA ATPase superfamily protein [Prochlorococcus marinus str. MIT
9303]
Length = 545
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 236/531 (44%), Positives = 337/531 (63%), Gaps = 20/531 (3%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISA 184
L+EVV+DLGR P AR+P + EQ + +DL+ + ++G F DNR+GI+R+LHRISA
Sbjct: 34 LLEVVLDLGRVPEARYPGRALALGEQCLTRDDLQTTVDRLGQFGADNRAGIERTLHRISA 93
Query: 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADD 244
IRNR+ +V+GLTCRVGRAV G+ ++ DL++ G S+L++G PGVGKTT +REIAR+LADD
Sbjct: 94 IRNRQREVVGLTCRVGRAVFGTVAMVRDLLDSGQSLLLMGRPGVGKTTALREIARVLADD 153
Query: 245 HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
+RVV++DTSNEI GDGD+PH IGRARRMQV QH VMIEAVENHMPE I+IDEI
Sbjct: 154 LQRRVVVIDTSNEIAGDGDIPHPAIGRARRMQVSLPEQQHQVMIEAVENHMPEVIVIDEI 213
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
GTELEA AA TIA+RGVQLV TAHG + N++KNP+L LVGGI++VTLGDEEA++R+ Q
Sbjct: 214 GTELEAQAARTIAERGVQLVATAHGNALPNLIKNPTLSDLVGGIQAVTLGDEEARRRRTQ 273
Query: 365 KTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKV 424
KT+LER PTF AVE+ +R +H + ATVD +L G+LP ++R++D++ L
Sbjct: 274 KTVLERAAEPTFPVAVEINTRNRWSIHADVAATVDQLLRGQLPRPQLRELDSDGSVRLVD 333
Query: 425 TPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYT 484
R S P + + +D A RS +R+++ C T
Sbjct: 334 AQPSRSSSPRPALAAVPLPDPKAPSPRAAPPAQDPAEAISAERSDQRALQVLC---CGIT 390
Query: 485 YRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVI 544
++++ + + G + DD+ AD +L+ + P +R A+ ++PV VI
Sbjct: 391 PQLVD----EAIRRHGW--PVRWVDDLNEADVVLSIRKGLGHQPTLRRQARESRVPVLVI 444
Query: 545 KSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLA 604
KS+T+ Q+ +A+ +L + G +L + + D + ED + ALEE RLA
Sbjct: 445 KSDTLPQVERALERLLARRA-GPQDQLSHSESQDGDQED----------ALAALEECRLA 493
Query: 605 IEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
+E +V+P G VELLPR ++ Q++LV Y+L+++ G RL++ P
Sbjct: 494 VEKVVLPYGRPVELLPRSEQVRQMQVDLVTRYRLSSDVFGQAEQQRLRVYP 544
>gi|374249429|ref|YP_005088648.1| ycf45 gene product [Phaeocystis antarctica]
gi|340008120|gb|AEK26752.1| Ycf45 [Phaeocystis antarctica]
Length = 551
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 247/571 (43%), Positives = 358/571 (62%), Gaps = 43/571 (7%)
Query: 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHA 160
L LE++P ++ L H + LIE+V+D+GR+P ARF +S + V +DL +
Sbjct: 7 LNQLLEIVPDFIQGPLKHHPKREILIEIVLDIGRRPEARFADSTEYLSYRTVVWQDLDYI 66
Query: 161 ISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI 220
I ++G FSDDNR+GI+++LHRIS++RNR+ +IGLTCR+GRAV G+ II DL+E SI
Sbjct: 67 IKRLGKFSDDNRAGIEKTLHRISSLRNRQGNIIGLTCRIGRAVFGTVSIIRDLLENKKSI 126
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNV 280
L++G PGVGKTT IREIAR+L+D KRV+I+DTSNEI GDGD+PH IG+ARRMQV +
Sbjct: 127 LLLGKPGVGKTTAIREIARVLSDGMKKRVIIIDTSNEIAGDGDLPHPSIGKARRMQVSST 186
Query: 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPS 340
QH +MIEAVENHMPE IIIDEIGTELEA AA TIA+RGVQL+GTAHG ++N++KNP+
Sbjct: 187 KNQHEIMIEAVENHMPEIIIIDEIGTELEATAARTIAERGVQLIGTAHGNALENLIKNPT 246
Query: 341 LQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDA 400
+ L+GGI+ VTLGDEEAK+R K+ILERK PPTF AVE+ +H + +VD
Sbjct: 247 ITDLIGGIQYVTLGDEEAKRRGSAKSILERKTPPTFDIAVEIHDSQTWVIHDNIGNSVDL 306
Query: 401 ILAGKLPLFEVRQM----DAEHH--------EPLKVTPILRGSYP---EESELTINEDKS 445
+L G+ PL + R + D H EP K T L+ + P ++ + +N
Sbjct: 307 LLRGQNPLLQKRNLTSGQDVNIHCEISYNKNEPHK-THHLKSNIPVKKQKKSILLN---G 362
Query: 446 AEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEI 505
++ ++ + D SN +S V +YTY I +L + + + L I
Sbjct: 363 VNLKENQKFKKLDNESNTLLTKS-----------VNLYTYGINTQELNAIIQTLRL--PI 409
Query: 506 DVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAV-RMILGMES 564
+T +I ADAILA + +K N ++ ++ + ++ I+ +++ ++VKA+ R+ ++
Sbjct: 410 VITKEIQYADAILALENLVKNNRRLKQISYSRKTTIYTIQRHSLLEIVKALQRLDNKYDT 469
Query: 565 FGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSE 624
F TI + + + I I+ E + LEE RL+IE I+IP + ++LLPR S
Sbjct: 470 FPTIKRQTIRKAARI-IDK---------ELLTPLEETRLSIEEIIIPNHKILDLLPRTSS 519
Query: 625 IVARQLELVESYQLAAENSGTELNPRLQILP 655
+ Q +LV+ YQL + N G +LN R++I P
Sbjct: 520 VRKLQHDLVKHYQLNSTNVGNKLNRRVRIYP 550
>gi|33863996|ref|NP_895556.1| ATPase AAA [Prochlorococcus marinus str. MIT 9313]
gi|33635580|emb|CAE21904.1| AAA ATPase superfamily [Prochlorococcus marinus str. MIT 9313]
Length = 545
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 234/531 (44%), Positives = 336/531 (63%), Gaps = 20/531 (3%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISA 184
L+EVV+DLGR P AR+P + EQ + +DL+ + ++G F DNR+GI+R+LHRISA
Sbjct: 34 LLEVVLDLGRVPEARYPGRALALGEQCLTRDDLQTTVDRLGQFGADNRAGIERTLHRISA 93
Query: 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADD 244
IRNR+ +V+GLTCRVGRAV G+ ++ DL++ G S+L++G PGVGKTT +REIAR+LADD
Sbjct: 94 IRNRQREVVGLTCRVGRAVFGTVAMVRDLLDSGQSLLLMGRPGVGKTTALREIARVLADD 153
Query: 245 HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
+RVV++DTSNEI GDGD+PH IGRARRMQV QH VMIEAVENHMPE I+IDEI
Sbjct: 154 LQRRVVVIDTSNEIAGDGDIPHPAIGRARRMQVSLPEQQHQVMIEAVENHMPEVIVIDEI 213
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
GTELEA AA TIA+RGVQLV TAHG + N++KNP+L LVGGI++VTLGDEEA++R+ Q
Sbjct: 214 GTELEAQAARTIAERGVQLVATAHGNALANLIKNPTLSDLVGGIQAVTLGDEEARRRRTQ 273
Query: 365 KTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKV 424
KT+LER PTF AVEM +R +H + ATVD +L G+LP ++R++ ++ L
Sbjct: 274 KTVLERAAEPTFPVAVEMNTRNRWSIHADVAATVDQLLRGQLPRPQLRELGSDGSVRLVD 333
Query: 425 TPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYT 484
R S P + + +D+A R+ R+++ C T
Sbjct: 334 AQPSRSSSPRPALAAVPLPDPQAPSPRAAPPAQDHAEAISAERADHRALQVLC---CGIT 390
Query: 485 YRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVI 544
++++ + + G + DD+ AD +L+ + P +R A+ ++PV VI
Sbjct: 391 PQLVD----EAIRRHGW--PVRWVDDLHEADVVLSIRKGLGHQPTLRRQARESRVPVLVI 444
Query: 545 KSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLA 604
KS+T+ Q+ +A+ +L + G ++ + + D + ED + ALEE RLA
Sbjct: 445 KSDTLPQVERALERLLARRA-GPQDQISHSESQDGDQED----------ALAALEECRLA 493
Query: 605 IEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
+E +V+P G VELLPR ++ Q++LV Y+L+++ G RL++ P
Sbjct: 494 VEKVVLPYGRPVELLPRSEQVRQMQVDLVTRYRLSSDVFGQAEQQRLRVYP 544
>gi|113954993|ref|YP_729670.1| R3H domain-containing protein [Synechococcus sp. CC9311]
gi|113882344|gb|ABI47302.1| R3H domain protein [Synechococcus sp. CC9311]
Length = 548
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 252/564 (44%), Positives = 346/564 (61%), Gaps = 33/564 (5%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L + LLP+ ++ L L+EVV+DLGR P AR+ + V H DL+
Sbjct: 9 DLNRLVSLLPAELQSSLASTESRDQLLEVVLDLGRVPEARYSGWSTALGSTSVTHADLQA 68
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+ ++G F DNR+GI+R+LHRISAIRNR+ +V+GLTCRVGRAV G+ ++ DL++ G S
Sbjct: 69 MVERLGQFGSDNRAGIERTLHRISAIRNRRGEVVGLTCRVGRAVFGTVAMVRDLLDSGES 128
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT +REIAR+LADD KRVV++DTSNEI GDGD+PH IGRARRMQV
Sbjct: 129 LLLMGRPGVGKTTALREIARVLADDLGKRVVVIDTSNEIAGDGDIPHPAIGRARRMQVAR 188
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEA AA TIA+RGV LV TAHG + N++KNP
Sbjct: 189 PELQHQVMIEAVENHMPEVIVIDEIGTELEARAARTIAERGVTLVATAHGNALSNLIKNP 248
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGIESVTLGD+EA++R+ QKT+LER PTF+ AVEM SR+ V+ + VD
Sbjct: 249 TLCDLIGGIESVTLGDDEARRRRSQKTVLERAAEPTFSMAVEMHSRSRWAVYREVGRAVD 308
Query: 400 AILAGKLPLFEVRQMDAEHH----EP-LKVTPILRGSY---PEESELTINEDKSAEMESD 451
A+L G+LP E R+M ++ EP L +P+ R S P S L + M
Sbjct: 309 ALLRGQLPSPEERKMASDGRVLRVEPQLSTSPLRRPSLAPVPLPSPLDPIPLQPVGMGGS 368
Query: 452 EDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDI 511
SE +K S + PS V + E L + + + I DD+
Sbjct: 369 TQSE-------------LKPS-QAPSKMFQVLCCGLSEQRLDEAVRRH--DWSIQAVDDL 412
Query: 512 GTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKL 571
AD +L+ + + P +R A+ +P+ VIKS+T+ Q+ +A+ +L G L
Sbjct: 413 VQADVVLSVRQGLGRQPELRRQAREAGVPILVIKSDTLPQVERALERLLMRRDSG----L 468
Query: 572 PNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLE 631
P++ ++D + D + + ALEE RLAIE +V+P G VELLPR E+ Q +
Sbjct: 469 PHRDSAD-SGDGDGDQSDASA----ALEECRLAIEQVVVPQGRPVELLPRTEEVRQMQSD 523
Query: 632 LVESYQLAAENSGTELNPRLQILP 655
LV Y+L ++ GT RL++ P
Sbjct: 524 LVTRYRLRSDVYGTSGQRRLRVFP 547
>gi|51209952|ref|YP_063616.1| conserved hypothetical plastid protein [Gracilaria tenuistipitata
var. liui]
gi|50657706|gb|AAT79691.1| conserved hypothetical plastid protein [Gracilaria tenuistipitata
var. liui]
Length = 562
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 254/566 (44%), Positives = 343/566 (60%), Gaps = 38/566 (6%)
Query: 109 PSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS 168
P+ +R L +H E LIEVVMDLGRKP ARFP G +S++I+ +DL ++I ++G+FS
Sbjct: 15 PNFIRHPLQIHPERKVLIEVVMDLGRKPEARFPKGPEYLSKRIITWQDLDYSIKRIGNFS 74
Query: 169 DDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGV 228
DNRSGI+R+LHRIS+I+NR+ IGLTCRVGRA+ G+ II DL+ SIL++G PGV
Sbjct: 75 ADNRSGIERTLHRISSIKNRQGSTIGLTCRVGRAILGTISIIRDLLNTYPSILLLGKPGV 134
Query: 229 GKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMI 288
GKTT+IREIAR+LAD+ KRVVI+DTSNEI GDGDVPH IGRARRMQV +QH VMI
Sbjct: 135 GKTTVIREIARVLADEMEKRVVIIDTSNEIAGDGDVPHPAIGRARRMQVSKPELQHQVMI 194
Query: 289 EAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348
EA+ENHMPE IIIDEIGTELEALAA TIA+RGVQLVGTAHG +D+++KNP L L+GGI
Sbjct: 195 EAIENHMPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNYLDSLIKNPILSDLIGGI 254
Query: 349 ESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPL 408
+ VTLGD+EAK+R QK+ILERK P F A+E+ R VH + VD +L G
Sbjct: 255 QYVTLGDDEAKRRGSQKSILERKASPAFQVAIEIHDRHSWIVHESVGRAVDQLLQGVNLW 314
Query: 409 FEVRQM--------DAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYA 460
+ R++ + E + P + E +++I KS + +
Sbjct: 315 VQRRKLMPNGAIFVECEQYIP---NAFISNISRFEPKVSIKNLKSHNTNIHSINIKSSFN 371
Query: 461 SNQFKNR----------SIKRSVRKPSPPVCVYTYRILEADLLQVAKVMG-LEDEIDVTD 509
+Q KN S +++ K + VY Y I + +QV ++ L I +T
Sbjct: 372 YSQEKNINKLQEISAVPSFSKNIMKDISNIRVYLYYI---NSVQVEMIINTLHLPIILTK 428
Query: 510 DIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTIS 569
DI AD IL+ S K N ++ VAK + ++ I S+T A + +A+ I+ I
Sbjct: 429 DIVQADVILSLRSGFKHNTKLKQVAKIRHITIYTICSSTSANIKRALTKIVN------ID 482
Query: 570 KLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQ 629
K+ N + + I T+ E+ L E R+AIE IV ++VELL R + Q
Sbjct: 483 KVSNYNWNTI-------CENSTVIELRILIETRIAIEKIVNGKKQSVELLSRNVNLRKLQ 535
Query: 630 LELVESYQLAAENSGTELNPRLQILP 655
+L+ Y L + + G E N RL+I P
Sbjct: 536 HQLINFYNLRSRSFGEEPNRRLRIFP 561
>gi|318042567|ref|ZP_07974523.1| ATPase [Synechococcus sp. CB0101]
Length = 556
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 243/561 (43%), Positives = 339/561 (60%), Gaps = 24/561 (4%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ LE+LP +R+ L L+EVV+DLGR P AR+P + + +V+ DL
Sbjct: 14 DLDRLLEVLPEAVRQALAPPEAREQLLEVVLDLGRVPEARYPGRAVGLGDAVVERADLAA 73
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+ ++G F DNR+GI+R+LHRISAIRNR ++GLTCRVGRAV G+ ++ DL++ G S
Sbjct: 74 VVEQLGAFGGDNRAGIERTLHRISAIRNRTGTIVGLTCRVGRAVFGTVAMVRDLMDSGQS 133
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT +REIAR+LAD+ KRVV++DTSNEI GDGD+PH IGRARRMQV
Sbjct: 134 LLLMGRPGVGKTTALREIARVLADELGKRVVVIDTSNEIAGDGDIPHPAIGRARRMQVAR 193
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEA AA TIA+RGV LV TAHG + N+VKNP
Sbjct: 194 PELQHQVMIEAVENHMPEVIVIDEIGTELEAQAARTIAERGVMLVATAHGNELANLVKNP 253
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGIESVTLGDEEA++R+ QKT+LER PTF AVEM +R VH + TVD
Sbjct: 254 TLSDLVGGIESVTLGDEEARRRRSQKTVLERAAEPTFPLAVEMHTRNRWLVHRDVARTVD 313
Query: 400 AILAGKLPLFEVRQMDAEH----HEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSE 455
+L G+LP +VR++D + EP ++R PE ++ +
Sbjct: 314 LLLRGQLPRPQVRELDGDGRLHLQEPSPPQALIR---PEPAQGGRPPLPRRPRDLAPVPL 370
Query: 456 DEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTAD 515
+ A+ + + + P P+ +Y + L Q + L + + + AD
Sbjct: 371 PDPVAAPEPEPAPDEAQAGAPQSPLLLYGVGVSALLLEQAIRSRRL--PVQCVETVEEAD 428
Query: 516 AILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAV-RMILGMESFGTISKLPNK 574
+LA + Q P +R A+ +P+ VIK++T+ Q+ + + R++ E P +
Sbjct: 429 VVLALRQHLGQQPELRRRAQQAGVPILVIKADTLPQVQRGLERLLQRREPAEPPQAEPGR 488
Query: 575 STSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVE 634
S +D +++ ALEE RLA+E +V+ G+ VELLPR + Q EL
Sbjct: 489 SGAD--------------DDLAALEECRLAVEQLVLAKGQPVELLPRSERVRRLQAELAA 534
Query: 635 SYQLAAENSGTELNPRLQILP 655
YQLA + G+ RL+I P
Sbjct: 535 RYQLATADFGSGRQQRLRIFP 555
>gi|148238773|ref|YP_001224160.1| ATPase [Synechococcus sp. WH 7803]
gi|147847312|emb|CAK22863.1| AAA ATPase superfamily protein with a possible REH domain
[Synechococcus sp. WH 7803]
Length = 545
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 247/574 (43%), Positives = 337/574 (58%), Gaps = 56/574 (9%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L LLP+ +R+ L + + L+EVV+DLGR P AR+P + ++ ++ DL+
Sbjct: 9 DLQRLLSLLPTPVRKVLEQNEQSDQLLEVVLDLGRLPEARYPGRSQPLGDRCLERSDLEE 68
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+ ++G F DNR+GI+R+LHRISAIRNR+ V+GLTCRVGRAV G+ ++ DL++ S
Sbjct: 69 MVDRLGQFGADNRAGIERTLHRISAIRNRRGDVVGLTCRVGRAVFGTVAMVRDLLDSEQS 128
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT +REIAR+LADD KRVV++DTSNEI GDGD+PH IGRARRMQV
Sbjct: 129 LLLMGRPGVGKTTALREIARVLADDLGKRVVVIDTSNEIAGDGDIPHPAIGRARRMQVAR 188
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEA AA TIA+RGV LV TAHG + N++KNP
Sbjct: 189 PELQHQVMIEAVENHMPEVIVIDEIGTELEAQAARTIAERGVMLVATAHGNALANLIKNP 248
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGIESVTLGDEEA++R+ QKT+LER PTF A+EM SR VH + TVD
Sbjct: 249 TLCDLVGGIESVTLGDEEARRRRSQKTVLERAAEPTFPIAIEMHSRHRWAVHDDVARTVD 308
Query: 400 AILAGKLP------LFE---VRQMDA---------EHHEPLKVTPILRGSYPEESELTIN 441
+L G+ P L E VR +DA + L V P+ P + ++
Sbjct: 309 LLLRGQTPRPQERELTEDGGVRLVDAVAPQSLRAPQKRPALAVVPM---PDPVAEPVRVS 365
Query: 442 EDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGL 501
K AE D E + ++ +VR PV
Sbjct: 366 ASKDAEKTEGRDPETLQILCCGLSRQRLEEAVRCHRWPV--------------------- 404
Query: 502 EDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILG 561
DD+ AD +L+ + + P +R A+ +P+ VIKS+++ Q+ +A+ +L
Sbjct: 405 ----QAVDDLSAADVLLSVRQGLGRQPELRRQAREAGVPILVIKSDSLPQVERALERLLS 460
Query: 562 MESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPR 621
S LP S ++ P R L ALEE RLA+E +V+P G VELLPR
Sbjct: 461 RRSRPETQSLPPVSAAE-------PARGDALA---ALEECRLAVERVVMPEGRPVELLPR 510
Query: 622 RSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
++ Q +LV Y L ++ G RL++ P
Sbjct: 511 SEVVLQMQADLVARYSLRSDVYGPSDQRRLRVFP 544
>gi|352096524|ref|ZP_08957351.1| single-stranded nucleic acid binding R3H domain-containing protein
[Synechococcus sp. WH 8016]
gi|351676174|gb|EHA59328.1| single-stranded nucleic acid binding R3H domain-containing protein
[Synechococcus sp. WH 8016]
Length = 543
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 239/556 (42%), Positives = 336/556 (60%), Gaps = 22/556 (3%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L + LLP+ ++ L L+EVV+DLGR P AR+ G + + DL+
Sbjct: 9 DLNRLVSLLPAELQASLASPESRDQLLEVVLDLGRVPEARYSGGSTPLGTSTITRADLQA 68
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+ ++G F DNR+GI+R+LHRISAIRNR+ +V+GLTCRVGRAV G+ ++ DL+ G S
Sbjct: 69 MVERLGQFGSDNRAGIERTLHRISAIRNRRGEVVGLTCRVGRAVFGTVAMVRDLLYSGES 128
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT +REIAR+L+DD KRVV++DTSNEI GDGD+PH IGRARRMQV
Sbjct: 129 LLLMGRPGVGKTTALREIARVLSDDLGKRVVVIDTSNEIAGDGDIPHPAIGRARRMQVAR 188
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEA AA TIA+RGV LV TAHG + N++KNP
Sbjct: 189 PELQHHVMIEAVENHMPEVIVIDEIGTELEARAARTIAERGVTLVATAHGNALSNLIKNP 248
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGIESVTLGD+EA++R+ QKT+LER PTF+ AVE+ SR+ V+ + VD
Sbjct: 249 TLCDLIGGIESVTLGDDEARRRRSQKTVLERAAEPTFSMAVEIHSRSHWAVYREVGRAVD 308
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
A+L G +P E R+M A L+V P + S L + +
Sbjct: 309 ALLRGHVPSPEERKM-ASDGRVLRVEPQVSPSPLRRPSLAPVPLPDPVDPNPHQPVEMGS 367
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
A + K + PS + V + E L + + + + DD+ AD +L+
Sbjct: 368 APSALKE------AQAPSTLLQVLCCGLSEQRLDEAVRRH--DWAVQAVDDLVQADVVLS 419
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDI 579
+ + P +R A+ +P+ VIKS+T+ Q+ +A+ +L G + ++ ++D
Sbjct: 420 VRQGLGRQPELRRQARDAGVPILVIKSDTLPQVERALERLLMRRDHG----VSDRDSADS 475
Query: 580 EIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLA 639
+ DA ALEE RLA+E +V+P G VELLPR ++ Q ELV Y+L
Sbjct: 476 GDQSDASA---------ALEECRLAVEQVVVPQGRPVELLPRNDDVRQMQAELVTRYRLR 526
Query: 640 AENSGTELNPRLQILP 655
++ GT RL++ P
Sbjct: 527 SDVYGTSGQRRLRVFP 542
>gi|71842246|ref|YP_277334.1| hypothetical chloroplast RF45 [Emiliania huxleyi]
gi|60101489|gb|AAX13833.1| hypothetical chloroplast RF45 [Emiliania huxleyi]
gi|336286160|gb|AEI29496.1| hypothetical chloroplast RF45 [Emiliania huxleyi]
Length = 558
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 237/581 (40%), Positives = 343/581 (59%), Gaps = 59/581 (10%)
Query: 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHA 160
L L++LP + + L LIE+V+D+GR+P ARF +G +S + + +DL++
Sbjct: 7 LNQLLDILPEFISKPLRTTEMRTQLIEIVLDIGRRPEARFATGTKYLSYKTIVWQDLEYV 66
Query: 161 ISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI 220
+ ++G FS DNR+GI+++LHR+SA+RNR VIGLTCR+GRA+ G+ IICDL+E SI
Sbjct: 67 LKRLGKFSGDNRAGIEKTLHRVSALRNRNGGVIGLTCRIGRAIFGTVNIICDLLEKRKSI 126
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNV 280
L++G PGVGKTT IREIAR+L+DD KRV+I+DTSNEI GDGD+PH IG+ARRMQV N
Sbjct: 127 LLLGRPGVGKTTAIREIARVLSDDMNKRVIIIDTSNEIAGDGDLPHPSIGKARRMQVRNP 186
Query: 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPS 340
QH VMIEAVENHMPE IIIDEIGTELEA AA TIA+RGVQLVGTAHG +DN++KNP+
Sbjct: 187 QNQHQVMIEAVENHMPEIIIIDEIGTELEATAARTIAERGVQLVGTAHGSALDNLIKNPT 246
Query: 341 LQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDA 400
L L+GGI+ VTLGDEEA++R K+ILERK PPTF AVE+ + +H ++ +VD
Sbjct: 247 LTDLIGGIQYVTLGDEEARRRGSSKSILERKAPPTFEIAVEIHNVKTWVIHDNIERSVDL 306
Query: 401 ILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYA 460
+L G+ + R++ +P RG + LT + + + E+S +
Sbjct: 307 LLQGQNLALQKREL----------SPFDRGIV--KCSLTHSNKEDESLYGIENSSN---- 350
Query: 461 SNQFKNRSIKRSVRKPSPP--------------------------VCVYTYRILEADLLQ 494
F N K+S PS + +Y Y I DL
Sbjct: 351 ---FTNPGYKKSKTNPSQLGRDEYVKSKKSNKNNSLVKKELGERFIFLYVYGINSQDLCS 407
Query: 495 VAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVK 554
+ K + L I VT ++ AD +LA + +K N +R ++ + + I +N++ Q+ K
Sbjct: 408 LIKTLDL--PIIVTREVQYADNVLALGNLIKNNKKLRQISSSRNINISTIPNNSLLQIAK 465
Query: 555 AVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGE 614
A++ I+ S G+ E ++D ++ + + LEE + I+ I+
Sbjct: 466 ALKQIVIRNSSGS------------EFKNDDRIKRASGQLFSPLEETQFLIDEIIQSKKR 513
Query: 615 AVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
A+ LLPR E+ Q +L+ YQL + + G E + +++ P
Sbjct: 514 AINLLPRSREVRKLQHQLISHYQLKSISVGVEPHRYVRLFP 554
>gi|116075770|ref|ZP_01473029.1| hypothetical protein RS9916_39931 [Synechococcus sp. RS9916]
gi|116067085|gb|EAU72840.1| hypothetical protein RS9916_39931 [Synechococcus sp. RS9916]
Length = 560
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 243/562 (43%), Positives = 335/562 (59%), Gaps = 69/562 (12%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISA 184
L+EVV+DLGR P AR+P + + + E+L + ++G F DNR+GI+R+LHRISA
Sbjct: 36 LLEVVLDLGRVPEARYPGRSMPLGDICLSREELLATVERLGQFGADNRAGIERTLHRISA 95
Query: 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADD 244
IRNR+ V+GLTCRVGRAV G+ I+ DL++ G S+L++G PGVGKTT +REIAR+LAD+
Sbjct: 96 IRNRRGDVVGLTCRVGRAVFGTVAIVRDLLDSGESLLLMGRPGVGKTTALREIARVLADE 155
Query: 245 HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
KRVV++DTSNEI GDGD+PH IGRARRMQV +QH VMIEAVENHMPE I+IDEI
Sbjct: 156 LGKRVVVIDTSNEIAGDGDIPHPAIGRARRMQVARPELQHQVMIEAVENHMPEVIVIDEI 215
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
GTELEA AA TIA+RGV LV TAHG + N++KNP+L LVGGIESVTLGDEEA++R+ Q
Sbjct: 216 GTELEAQAARTIAERGVMLVATAHGNALANLIKNPTLCDLVGGIESVTLGDEEARRRRSQ 275
Query: 365 KTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHH----- 419
KT+LER PTF AVEM R VH + ATVD +L G P ++R++ +
Sbjct: 276 KTVLERAAEPTFPLAVEMHQRHRWAVHPDVGATVDLLLRGHAPRAQLRELSPDGQVRLVE 335
Query: 420 -EP------------------LKVTPILR-------GSYPEESELTINEDKSAEMESDED 453
EP L+ P+L + P S+L++ E ++ ++ +D
Sbjct: 336 IEPAGTGPRRPQTPPSPSPGLLRDKPVLAVVPSPDPAADPVGSDLSLAEGEAVSLQ--DD 393
Query: 454 SEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGT 513
E ++ Q C T R++E + + L +E++
Sbjct: 394 GEGAEFDGLQVL--------------CCGLTPRLVEEATRRHDWPVRLVEELE------Q 433
Query: 514 ADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPN 573
AD +L+ M Q P +R A+ ++P+ VIKS+T+AQ+ +A+ +L + T P
Sbjct: 434 ADVVLSVRQGMGQQPGLRRQAREARVPILVIKSDTLAQVERALERLLARRADQT----PP 489
Query: 574 KSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELV 633
S+ D + ALEE RLA+E +V+P G VELLPR E+ Q +LV
Sbjct: 490 ASSED------------RADAFAALEECRLAVEQVVVPLGRPVELLPRTEEVRRMQADLV 537
Query: 634 ESYQLAAENSGTELNPRLQILP 655
E Y+L ++ G RL++ P
Sbjct: 538 ERYRLRSDVFGQADQRRLRVFP 559
>gi|78211931|ref|YP_380710.1| ATPase [Synechococcus sp. CC9605]
gi|78196390|gb|ABB34155.1| ATPase [Synechococcus sp. CC9605]
Length = 546
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 235/531 (44%), Positives = 326/531 (61%), Gaps = 19/531 (3%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISA 184
L+EVV+DLGR P AR+P + + EDL ++++G F DNR+GI+R+LHRISA
Sbjct: 34 LLEVVLDLGRVPEARYPGRALALGSTPLSREDLAVVVARLGQFGGDNRAGIERTLHRISA 93
Query: 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADD 244
IRNR+ V+GLTCRVGRAV G+ ++ DL++GG S+L++G PGVGKTT +REIAR+LAD+
Sbjct: 94 IRNRQGDVVGLTCRVGRAVFGTVAMVRDLLDGGQSLLLMGRPGVGKTTALREIARVLADE 153
Query: 245 HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
+RVV++DTSNEI GDGD+PH IGRARRMQV +QH MIEAVENHMPE I+IDEI
Sbjct: 154 LERRVVVIDTSNEIAGDGDIPHPAIGRARRMQVARPELQHQTMIEAVENHMPEVIVIDEI 213
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
GTELEA AA TIA+RGV LV TAHG + N++KNP+L LVGGI++VTLGDEEA++R+ Q
Sbjct: 214 GTELEAQAARTIAERGVVLVATAHGNALANLIKNPTLSDLVGGIQAVTLGDEEARRRRSQ 273
Query: 365 KTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKV 424
KT+LER PTF AVEM SR VH + ATVD +L G P + R++ E L
Sbjct: 274 KTVLERAAEPTFPVAVEMHSRQRWAVHTDVAATVDQLLRGLKPRVQERELTPEGGVQLVD 333
Query: 425 TPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYT 484
P G S+ + D+ + + + S K S + S C
Sbjct: 334 PPQSSGLLRPPSQRSFA-DQPVSVPVPMPAASDREVSAAEKPASPETSAEHLQVLCCGVP 392
Query: 485 YRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVI 544
R++E + + G + V +D+ AD +L+ + + P +R + +P+ VI
Sbjct: 393 PRVVE----EAIRSHGWKAR--VVEDLSEADVVLSVRLGLSRQPSLRRQVRDLGIPILVI 446
Query: 545 KSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLA 604
KS+T+ Q+ +A+ +L ++ T P + D +DD E+ ALEE RLA
Sbjct: 447 KSDTLPQVTRAMARLLRRQATETA---PEVTPPDQASQDD---------ELAALEECRLA 494
Query: 605 IEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
+E +V+P G VELLPR ++ Q +LV Y+L ++ G RL++ P
Sbjct: 495 VEQVVMPQGRPVELLPRSERVLRMQADLVRRYRLRSDVFGEAEMSRLRVFP 545
>gi|260436547|ref|ZP_05790517.1| ATPase [Synechococcus sp. WH 8109]
gi|260414421|gb|EEX07717.1| ATPase [Synechococcus sp. WH 8109]
Length = 546
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 230/542 (42%), Positives = 330/542 (60%), Gaps = 41/542 (7%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISA 184
L+EVV+DLGR P AR+PS + + EDL ++++G F DNR+GI+R+LHRISA
Sbjct: 34 LLEVVLDLGRVPEARYPSRALALGSTPLSREDLTAVVARLGQFGGDNRAGIERTLHRISA 93
Query: 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADD 244
IRNR+ +V+GLTCRVGRAV G+ ++ DL++GG S+L++G PGVGKTT +REIAR+LAD+
Sbjct: 94 IRNRQGEVVGLTCRVGRAVFGTVAMVRDLLDGGQSLLLMGRPGVGKTTALREIARVLADE 153
Query: 245 HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
+RVV++DTSNEI GDGD+PH IGRARRMQV +QH MIEAVENHMPE I+IDEI
Sbjct: 154 LERRVVVIDTSNEIAGDGDIPHPAIGRARRMQVARPELQHQTMIEAVENHMPEVIVIDEI 213
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
GTELEA AA TIA+RGV LV TAHG + N++KNP+L LVGGI++VTLGDEEA++R+ Q
Sbjct: 214 GTELEAQAARTIAERGVVLVATAHGNALANLIKNPTLSDLVGGIQAVTLGDEEARRRRSQ 273
Query: 365 KTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHH----E 420
KT+LER PTF AVEM SR VH + ATVD +L G P + R++ E +
Sbjct: 274 KTVLERAAEPTFPVAVEMHSRQRWAVHTDVAATVDQLLRGLKPRVQERELTPEGGVQLVD 333
Query: 421 PLKVTPILR-------GSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSV 473
P + + +LR P + + + + + E+ + ++ +
Sbjct: 334 PPQASGLLRPPSQRSFADQPVSAPVPMPAASARGASAAEEPPPLETSAEHLQVLC----- 388
Query: 474 RKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGV 533
C R++E + + G + V +D+ AD +L+ + + P +R
Sbjct: 389 -------CGVQPRVVE----EAIRSHGWKAR--VVEDLSEADVVLSVRLGLSRQPSLRRQ 435
Query: 534 AKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLE 593
+ +P+ VIKS+T+ Q+ +A +++L + ++ E P R +
Sbjct: 436 VRDLGIPILVIKSDTLPQVTRA------------MARLLRRQATETAAEVTPPDRASQDD 483
Query: 594 EIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQI 653
E+ ALEE RLA+E +V+P G VELLPR ++ Q +LV Y+L ++ G RL++
Sbjct: 484 ELAALEECRLAVEQVVMPQGRPVELLPRSERVLRMQADLVRRYRLRSDVFGEAEMSRLRV 543
Query: 654 LP 655
P
Sbjct: 544 FP 545
>gi|87124959|ref|ZP_01080806.1| hypothetical protein RS9917_03118 [Synechococcus sp. RS9917]
gi|86167279|gb|EAQ68539.1| hypothetical protein RS9917_03118 [Synechococcus sp. RS9917]
Length = 547
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 238/540 (44%), Positives = 331/540 (61%), Gaps = 36/540 (6%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISA 184
L+EVV+DLGR P AR+P + E+ + EDL+ + ++G F DNR+GI+R+LHRISA
Sbjct: 34 LLEVVLDLGRVPEARYPGRSLALGERCLTREDLQSTVERLGQFGADNRAGIERTLHRISA 93
Query: 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADD 244
IRNR+ V+GLTCRVGRAV G+ ++ DL++ G S+L++G PGVGKTT +REIAR+LAD+
Sbjct: 94 IRNRRGDVVGLTCRVGRAVFGTVALVRDLLDSGQSLLLMGRPGVGKTTALREIARVLADE 153
Query: 245 HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
KRVV++DTSNEI GDGD+PH IGRARRMQV +QH VMIEAVENHMPE I+IDEI
Sbjct: 154 LEKRVVVIDTSNEIAGDGDIPHPAIGRARRMQVARPELQHQVMIEAVENHMPEVIVIDEI 213
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
GTELEA AA TIA+RGV LV TAHG + N++KNP+L LVGGIESVTLGDEEA++R+ Q
Sbjct: 214 GTELEAQAARTIAERGVMLVATAHGNALANLIKNPTLCDLVGGIESVTLGDEEARRRRSQ 273
Query: 365 KTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKV 424
KT+LER PTF AVEM SR VH + TVD +L G+ P + R + A+ L
Sbjct: 274 KTVLERAAEPTFPLAVEMHSRHRWAVHADVGRTVDLLLRGQTPRPQERSLAADGSVQLVE 333
Query: 425 T--PILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPP--- 479
+ P++ S P + A D + S+ +V SP
Sbjct: 334 SPDPVIGASRPRARPMRQLRQAHAAAPQLAAVPTPDPVAT-----SLPEAVDSVSPAEDA 388
Query: 480 ----VCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAK 535
C T R++E + ++ + + DD+ AD +L+ + + P +R A+
Sbjct: 389 LQVLCCGLTPRLVE----EASRRHRW--PVRLVDDLAEADVVLSVRQGLGRQPGLRRQAR 442
Query: 536 FHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEI 595
++P+ VIK++T+ Q+ +A+ +L + ++ P S ED A + +
Sbjct: 443 EARVPILVIKADTLPQVERALERLLSRRAG---AEPPAVS------EDQA-------DAL 486
Query: 596 DALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
ALEE RLA+E +V+P G VELLPR ++ Q +LV Y+L ++ G RL++ P
Sbjct: 487 AALEECRLAVERVVVPQGRPVELLPRTEDVRRMQADLVARYRLRSDVFGRADQQRLRVFP 546
>gi|116072568|ref|ZP_01469834.1| ATPase [Synechococcus sp. BL107]
gi|116064455|gb|EAU70215.1| ATPase [Synechococcus sp. BL107]
Length = 550
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 239/537 (44%), Positives = 333/537 (62%), Gaps = 27/537 (5%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISA 184
L+EVV+DLGR P AR+P + ++ + +DL + K+G F DNR+GI+R+LHRISA
Sbjct: 34 LLEVVLDLGRIPEARYPGRVSALGDRAITRDDLAVVVDKLGRFGADNRAGIERTLHRISA 93
Query: 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADD 244
IRNR+ +V+GLTCRVGRAV G+ ++ DL++ S+L++G PGVGKTT +REIAR+LAD+
Sbjct: 94 IRNRQGEVVGLTCRVGRAVFGTVAMVRDLLDSAKSLLLMGRPGVGKTTALREIARVLADE 153
Query: 245 HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
+RVV++DTSNEI GDGD+PH IGRARRMQV + QH VMIEAVENHMPE I+IDEI
Sbjct: 154 MQRRVVVIDTSNEIAGDGDIPHPAIGRARRMQVSSPERQHQVMIEAVENHMPEVIVIDEI 213
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
GTELEA+AA TIA+RGV LV TAHG + N++KNP+L LVGGI+SVTLGD+EA++R+ Q
Sbjct: 214 GTELEAMAARTIAERGVMLVATAHGNALANLIKNPTLSDLVGGIQSVTLGDDEARRRRTQ 273
Query: 365 KTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAE----HHE 420
KT+LER PTF AVEM SR +H + ATVD +L G+ P E R++ +E E
Sbjct: 274 KTVLERAAEPTFPLAVEMHSRHRWSIHADVAATVDQLLRGQKPRVEQRELTSEGGMRRFE 333
Query: 421 PLKVTPILRGSYP--EESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSP 478
P + LR Y S + S+E +S S D Q + +++ S +
Sbjct: 334 PEDLKGPLRRPYGAVASSLRSPRLGPSSEPKSPSLSP-VDSPQPQLIDEAVRTSALQVL- 391
Query: 479 PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQ 538
C T +++E QV + + DD+ AD +L+ + + +R AK
Sbjct: 392 -CCGITPQLVE----QVIRRHRWPARL--VDDLCDADVVLSVRQGLGRASALRRQAKDQH 444
Query: 539 LPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDAL 598
+P+ VIK++T+ Q+ +A+ +L + + PN D+ DD E+ L
Sbjct: 445 VPILVIKADTLPQIERALERLLSRRAS---APEPNAVLVDLSGNDD---------ELAGL 492
Query: 599 EEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
EE RLAIE +V+P G VEL+PR + Q ELV Y+L + G + RL++ P
Sbjct: 493 EECRLAIEQVVMPQGRPVELVPRTERVRGLQAELVSRYRLRCDVFGQAEHGRLRVFP 549
>gi|163847787|ref|YP_001635831.1| single-stranded nucleic acid binding R3H domain-containing protein
[Chloroflexus aurantiacus J-10-fl]
gi|222525655|ref|YP_002570126.1| single-stranded nucleic acid binding R3H domain-containing protein
[Chloroflexus sp. Y-400-fl]
gi|163669076|gb|ABY35442.1| single-stranded nucleic acid binding R3H domain protein
[Chloroflexus aurantiacus J-10-fl]
gi|222449534|gb|ACM53800.1| single-stranded nucleic acid binding R3H domain protein
[Chloroflexus sp. Y-400-fl]
Length = 539
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 241/558 (43%), Positives = 337/558 (60%), Gaps = 31/558 (5%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+++L L LP + + + +L+E+VMDLGR P AR+ + +S++ V ED+++
Sbjct: 9 DIQLLLATLPPAISEAIRKANDQDNLLEIVMDLGRLPEARYRGHELFLSDREVTSEDIQY 68
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I ++G+F +DNR+GI R+LHRIS IRNR+ VIGLTCRVGRAV G+ +II DLVE G S
Sbjct: 69 VIERIGEFGEDNRAGIPRTLHRISGIRNRRGVVIGLTCRVGRAVYGTVDIIRDLVETGQS 128
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PG GKTTL+RE AR+L D+ KRVVIVDTSNEI GDGD+PH GIGRARRMQVP
Sbjct: 129 ILLLGKPGTGKTTLLRETARVLGDELRKRVVIVDTSNEIAGDGDIPHPGIGRARRMQVPR 188
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH+VMIEAVENHMPE I+IDEIGTELEA AA TIA+RGVQLVGTAHG T+DN++ NP
Sbjct: 189 PAEQHNVMIEAVENHMPEVIVIDEIGTELEAAAARTIAERGVQLVGTAHGNTLDNLMVNP 248
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGDEEA++R QKT+LERK PPTF+ VE+ S V+ + A VD
Sbjct: 249 TLSDLVGGIQAVTLGDEEARRRGTQKTVLERKAPPTFSILVEIQSWDRVMVYPDVAAAVD 308
Query: 400 AILAGKLPLFEVRQMDAE---HHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSED 456
AIL G+ P E R DA H EP++ PI ++ E +M
Sbjct: 309 AILRGEDPPCEQRFRDANGVVHREPVRRAPIDAPAFGLRRGRGGRE--QGQMGG------ 360
Query: 457 EDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADA 516
+ + ++R+ S PP ++ + + + LQ A + L + D+ A
Sbjct: 361 ---SGPRLRDRNGSASSTLTMPPQRIFPFGV-SRNRLQSA-IERLRVPAVIVRDLKEATL 415
Query: 517 ILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKST 576
++ + +Q+ A+ +PV+V+++NT+ QM + + + + P +
Sbjct: 416 VMTLKNYYRQSSQQLRQAEEQGVPVYVLRNNTITQMERQLAQVFQLRELVDDEPAPFGND 475
Query: 577 SDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESY 636
S +E +AL E AI ++ AVEL PR S I Q ++ + Y
Sbjct: 476 SVVE---------------EALLETEQAITQVINGERNAVELTPRSSYIRRLQHQMADRY 520
Query: 637 QLAAENSGTELNPRLQIL 654
L +E+ G + N R++I
Sbjct: 521 NLRSESRGDDPNRRVKIF 538
>gi|390559754|ref|ZP_10244042.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
gi|390173675|emb|CCF83341.1| conserved hypothetical protein [Nitrolancetus hollandicus Lb]
Length = 563
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 240/534 (44%), Positives = 331/534 (61%), Gaps = 31/534 (5%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISA 184
LIE+VMDLGR+P ARF + +SE+ V E L ++G F DDNR+GI+R+LHRISA
Sbjct: 51 LIEIVMDLGRRPEARFHDHETYLSEEEVTREHLAFVAERIGQFGDDNRAGIERTLHRISA 110
Query: 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADD 244
IR+R ++GLTCR+GRAV G+ II DLVE G SIL++G PGVGKTT++RE AR+LADD
Sbjct: 111 IRSRSGDIVGLTCRIGRAVYGTIGIIRDLVESGESILLLGRPGVGKTTMLRETARVLADD 170
Query: 245 HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
KRVVIVDTSNEI GDGD+PH IGRARRMQVP+ ++QH+VMIEA+ENHMPE I+IDEI
Sbjct: 171 LRKRVVIVDTSNEIAGDGDIPHPSIGRARRMQVPSPSLQHAVMIEAIENHMPEVIVIDEI 230
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
GTELEA AA TIA+RGVQLVGTAHG T++N++ NP+L L+GGI+SVTL DEEA++R Q
Sbjct: 231 GTELEAAAARTIAERGVQLVGTAHGNTLENLMMNPTLSDLIGGIQSVTLSDEEARRRGTQ 290
Query: 365 KTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKV 424
K+ILERK PPTFT VE+ +R VH + A+VD+IL G+ E+RQ A+ +V
Sbjct: 291 KSILERKAPPTFTVMVEIQARDRVAVHRDVAASVDSILRGRPLQVEIRQRGADG----EV 346
Query: 425 TPILRGSY--PEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCV 482
T L Y PE + E + + D A + + P P +
Sbjct: 347 TVTLEQPYLAPER----VAESGKSRGVTQPRPVQHDGAQPR-PAMPLPAGRATPGKPARI 401
Query: 483 YTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVF 542
+ + + L Q MGL + + D+ ADA++ + ++ P A+ +P++
Sbjct: 402 FPFGVSRNRLEQAIHQMGL--PVTIVRDLREADAVITLKNYYRRRPQQLREAEERGVPIY 459
Query: 543 VIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEI--DALEE 600
V++SNT+ QM +R + G +S + +D+ R E++ A+ E
Sbjct: 460 VVRSNTIVQMNNLMRSLFG------------ESVVAAQGDDE---RAGISEDLIAAAMFE 504
Query: 601 VRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQIL 654
AI + ++ G ++VEL P+ S + Q EL E Y L + + G E N ++I
Sbjct: 505 AETAI-HDIMDGADSVELQPQSSRVRRLQHELAERYNLISRSRGREPNRHVEIF 557
>gi|300087975|ref|YP_003758497.1| single-stranded nucleic acid-binding R3H domain-containing protein
[Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299527708|gb|ADJ26176.1| single-stranded nucleic acid binding R3H domain protein
[Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 512
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 245/554 (44%), Positives = 343/554 (61%), Gaps = 55/554 (9%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L + L++LP +R L +L LIEVV+DLGR P ARF + V+ + D+++
Sbjct: 8 DLSILLDILPPEIREPLNQQEDLQHLIEVVIDLGRPPEARFLRREIVLRAEESSESDIEY 67
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++++G F +DNR+GI+R+LHRISAIRNRK +VIGLT RVGRAV G+ +II DL++ G S
Sbjct: 68 VVNRIGQFGEDNRAGIERTLHRISAIRNRKGRVIGLTVRVGRAVYGTIKIIDDLIQSGQS 127
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT++RE AR+LADD KRVVIVDTSNEI GDGD+PH IGRARRMQV +
Sbjct: 128 VLLMGRPGVGKTTMLRETARVLADDLRKRVVIVDTSNEIAGDGDIPHPAIGRARRMQVKS 187
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH+VMIEAVENHMPE ++IDEIGTELEA AA TIA+RGVQLVGTAHG T+ N+++NP
Sbjct: 188 PERQHAVMIEAVENHMPEVVVIDEIGTELEAQAARTIAERGVQLVGTAHGNTLANLMQNP 247
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI++VTLGDEEA++R QKT+LERK PPTF VE+ R + VH + TVD
Sbjct: 248 TLADLIGGIQAVTLGDEEARRRGTQKTVLERKSPPTFNVVVEIQERDQVAVHPNVSVTVD 307
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
AIL G P E+R + + ++ I ++P S E+ S +D
Sbjct: 308 AILRGLHPETEIRSLGDDGQ--VRSQFIQLEAHPHHS--CTGEEASESSMTD-------- 355
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
SP +Y + I L Q A+ +G+ + +T+ +G AD ++
Sbjct: 356 -----------------SP--VLYLFGINRHRLEQAAQELGIS--LHITERLGDADILVT 394
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDI 579
S + ++ P A+ +PV+V+KS+T AQ R +LG+ T K P++ T
Sbjct: 395 SRTYFRRRPQKVRDAENRDIPVYVMKSHTPAQF----RQLLGI---FTSQKWPSQPT--- 444
Query: 580 EIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLA 639
++P A+EE R+A++ V G E VEL P+ + I Q LVE +L
Sbjct: 445 ----ESPM-------TTAMEEARIAVDQ-VHSGIEKVELSPQSAYIRRLQHMLVERNKLH 492
Query: 640 AENSGTELNPRLQI 653
+++ G+ R+ I
Sbjct: 493 SDSQGSGPERRVSI 506
>gi|428200832|ref|YP_007079421.1| hypothetical protein Ple7327_0407 [Pleurocapsa sp. PCC 7327]
gi|427978264|gb|AFY75864.1| hypothetical protein Ple7327_0407 [Pleurocapsa sp. PCC 7327]
Length = 492
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 226/470 (48%), Positives = 317/470 (67%), Gaps = 15/470 (3%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF--PSGDWVISEQIVKHEDL 157
+L+ L++ P ++R+ L H + +LIEVV+DLGR+P ARF ++ +S+ +V E +
Sbjct: 6 DLQKLLDIFPPQIRQILKQHPQRDNLIEVVLDLGRRPEARFLDERAEY-LSDTLVTREQI 64
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+ I +VG F DNR+GI+++LHRISAIRNR +IGLTCRVGRAV G+ ++I DLVE G
Sbjct: 65 DYCIDRVGRFGTDNRAGIEQTLHRISAIRNRNGGIIGLTCRVGRAVYGTIDMIRDLVETG 124
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
SIL++G PGVGKTT +REIAR+LADD KRV+IVDTSNEI GDGD+PH IGRARRMQV
Sbjct: 125 KSILMLGRPGVGKTTALREIARVLADDLNKRVIIVDTSNEIAGDGDIPHPAIGRARRMQV 184
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
+ +Q+ VMIEAVENHMP+ I+IDEIGTELEA AA +IA+RGVQLVGTAHG +I+N++K
Sbjct: 185 ASPELQYKVMIEAVENHMPQAIVIDEIGTELEAYAARSIAERGVQLVGTAHGNSIENLIK 244
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NP L LVGGI+SVTLGDEEA++R QKT+ ERK PPTF AVEM+ R VH + T
Sbjct: 245 NPILCDLVGGIQSVTLGDEEARRRGSQKTVRERKAPPTFDIAVEMLERQRWVVHESVADT 304
Query: 398 VDAILAGKLPLFEVRQMDAEHHEPLKVT----PILRGSYPEESELTINEDKSAEMESDED 453
VD++L G P +VR M+ + T P+ R S E L ++E + +
Sbjct: 305 VDSLLRGHQPHLQVRTMNGNGRVAITRTVPRVPVHRQSISYEL-LDVSESNGWQ----KT 359
Query: 454 SEDEDYASNQFKNR-SIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIG 512
+ + + QF + K ++ + P+ +Y Y I L+ + + L I +T I
Sbjct: 360 GQIIPFPNVQFSDSVRYKLALMGKTAPLRLYAYGIGLHQLMSAIETLNL--PIVLTRKIE 417
Query: 513 TADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGM 562
ADAILA S +++N + +AK +++P+ +K+NT++Q+ +A++ + M
Sbjct: 418 KADAILALRSHLRKNADLPRIAKNYRVPIHTLKTNTISQITQALQQLSDM 467
>gi|33866596|ref|NP_898155.1| hypothetical protein SYNW2064 [Synechococcus sp. WH 8102]
gi|33633374|emb|CAE08579.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 543
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 244/571 (42%), Positives = 332/571 (58%), Gaps = 52/571 (9%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+LE L LLP +R L L+EVV+DLGR P AR+P + E + +DL
Sbjct: 9 DLERLLALLPDPVRDALRPPERRDQLLEVVLDLGRVPEARYPGQALALGEVALTRDDLDA 68
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++++G F DNR+GI+R+LHRISAIRNR+ V+GLTCRVGRAV G+ ++ DL++GG S
Sbjct: 69 MVARLGCFGADNRAGIERTLHRISAIRNRRGDVVGLTCRVGRAVFGTVALVRDLLDGGQS 128
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT +REIAR+LADD +RVV++DTSNEI GDGD+PH IGRARRMQV
Sbjct: 129 LLLMGRPGVGKTTALREIARVLADDLQRRVVVIDTSNEIAGDGDIPHPAIGRARRMQVAR 188
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH VMIEAVENHMPE I+IDEIGTELEA AA TIA+RGV LV TAHG + N++KNP
Sbjct: 189 PEQQHQVMIEAVENHMPEVIVIDEIGTELEAQAARTIAERGVMLVATAHGNALANLIKNP 248
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI+SVTLGD+EA++R+ QKT+LER PTF AVEM SR VH + +TVD
Sbjct: 249 TLSDLVGGIQSVTLGDDEARRRRSQKTVLERAAEPTFPVAVEMHSRQRWAVHTDVASTVD 308
Query: 400 AILAGKLPLFEVRQMDA-----------EHHEPLKVTPILRG----SYPEESELTINEDK 444
+L G P + R++ A E L P L+ +
Sbjct: 309 QLLRGLPPRIQERELAADGAVRLVDPPDERRPRLLAQPGLQSRPALAAVPMPPPAEPPLP 368
Query: 445 SAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDE 504
E E D S+D + ++ S R+ PV V
Sbjct: 369 DPEEEVDPASDDLQVLCCGITPQLVEESTRRHGWPVQV---------------------- 406
Query: 505 IDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMES 564
+D+ AD +L+ + + P +R A+ ++P+ VIK++T+ Q+ +A+ +L
Sbjct: 407 ---VEDLSDADVVLSIRQGLGRQPSLRRQARELKVPILVIKADTLPQVERALERLLSRRE 463
Query: 565 FGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSE 624
G + P + D +DD E+ LEE RLA+E +V+P G VELLPR
Sbjct: 464 -GMDQEEPGPVSGD--GQDD---------ELAGLEECRLAVEQVVMPQGRPVELLPRSER 511
Query: 625 IVARQLELVESYQLAAENSGTELNPRLQILP 655
+ Q +LVE Y+L ++ G RL++ P
Sbjct: 512 VRRMQADLVERYRLRSDVFGQAEQCRLRVFP 542
>gi|254423701|ref|ZP_05037419.1| R3H domain protein [Synechococcus sp. PCC 7335]
gi|196191190|gb|EDX86154.1| R3H domain protein [Synechococcus sp. PCC 7335]
Length = 665
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/339 (60%), Positives = 252/339 (74%)
Query: 79 RNGSVSDSPNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLA 138
R + S SA + +L LE+LP+ +R +L H LIEVV+DLGR+P A
Sbjct: 23 REPATSKLSKSAYSKPQAVTDDLPQLLEILPAYIRDQLESHSRRDHLIEVVLDLGRQPEA 82
Query: 139 RFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCR 198
RFP +SE V DL+H I +VG F DNR+G++ +LHRISA+RNRK VIGLTCR
Sbjct: 83 RFPDAVQYLSEAPVSKADLQHCIDRVGHFGGDNRAGLEETLHRISAMRNRKGDVIGLTCR 142
Query: 199 VGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEI 258
VGRAV G+ +I DLVE G SIL++G PGVGKTT +REIAR+LADD MKRVVI+DTSNEI
Sbjct: 143 VGRAVFGTITMIRDLVETGNSILMLGRPGVGKTTALREIARVLADDLMKRVVIIDTSNEI 202
Query: 259 GGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
GDGD+PH IGRARRMQV + QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+
Sbjct: 203 AGDGDIPHPAIGRARRMQVSHPEKQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAE 262
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTC 378
RGVQLVGTAHG ++N++KNP+L LVGGI+SVTLGD+EA++R QK++LERK PPTF
Sbjct: 263 RGVQLVGTAHGNRLENLIKNPTLSDLVGGIQSVTLGDDEARRRGSQKSVLERKAPPTFDI 322
Query: 379 AVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAE 417
AVEM+ R VH + +TVD IL G++P +VR ++AE
Sbjct: 323 AVEMLERQRWVVHEDVSSTVDFILRGQVPGQQVRSINAE 361
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 11/174 (6%)
Query: 482 VYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPV 541
VY Y I L V + + L + T ++ +ADA+LA S ++ + ++ VAK QLPV
Sbjct: 502 VYAYGISRQQLDHVVRTLDLP--VKFTKELASADAVLALRSHIRNHSKLKQVAKARQLPV 559
Query: 542 FVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEV 601
+ +KSN++ Q+ +++R +L ++ G +++ N DD E++ALEE
Sbjct: 560 YTVKSNSIPQITRSLRRLLDLDDDGEMAEGVNLDLFAQNGADD---------ELEALEEA 610
Query: 602 RLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
RLA+E IVIP + VELLPR +I Q EL E Y+L + + G E N RL+I P
Sbjct: 611 RLAVEQIVIPKSQPVELLPRSPKIRKMQHELAEHYRLKSLSFGDEPNRRLRIYP 664
>gi|78185517|ref|YP_377952.1| ATPase [Synechococcus sp. CC9902]
gi|78169811|gb|ABB26908.1| ATPase [Synechococcus sp. CC9902]
Length = 539
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 234/538 (43%), Positives = 328/538 (60%), Gaps = 40/538 (7%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISA 184
L+EVV+DLGR P AR+P + ++ + +DL + K+G F DNR+GI+R+LHRISA
Sbjct: 34 LLEVVLDLGRIPEARYPGRASALGDRAITRDDLADVVDKLGRFGADNRAGIERTLHRISA 93
Query: 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADD 244
IRNR+ +V+GLTCRVGRAV G+ ++ DL++ S+L++G PGVGKTT +REIAR+LAD+
Sbjct: 94 IRNRQGEVVGLTCRVGRAVFGTVAMVRDLLDSAQSLLLMGRPGVGKTTALREIARVLADE 153
Query: 245 HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
+RVV++DTSNEI GDGD+PH IGRARRMQV + QH VMIEAVENHMPE I+IDEI
Sbjct: 154 MQRRVVVIDTSNEIAGDGDIPHPAIGRARRMQVSSPEQQHQVMIEAVENHMPEVIVIDEI 213
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
GTELEA+AA TIA+RGV LV TAHG + N++KNP+L LVGGI+SVTLGD+EA++R+ Q
Sbjct: 214 GTELEAMAARTIAERGVMLVATAHGNALANLIKNPTLSDLVGGIQSVTLGDDEARRRRTQ 273
Query: 365 KTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAE----HHE 420
KT+LER PTF AVEM SR +H + ATVD +L G+ P E R++ +E E
Sbjct: 274 KTVLERAAEPTFPLAVEMHSRHRWSIHADVAATVDQLLRGQQPRVEQRELTSEGGMRRFE 333
Query: 421 PLKVT-PILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPP 479
P + P+ R S L + S DS + + +++
Sbjct: 334 PEDLKGPVRRPS------LAVASSPIPPSLSPLDSPNCQPGDEAVRTSALQVLC------ 381
Query: 480 VCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQL 539
C T +++E + + L DD+ AD +L+ + + +R AK +
Sbjct: 382 -CGITPQLVEQAIRRHRWPARL------VDDLCDADVVLSVRQGLGRVSALRRQAKDQHV 434
Query: 540 PVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIE--DDAPKRKPTLEEIDA 597
P+ VIK++T+ Q+ +A+ +L P+ S+ +E+ DD E+
Sbjct: 435 PILVIKADTLPQIERALERLLSRRDSA-----PDPSSIRVELSGYDD---------ELAG 480
Query: 598 LEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
LEE RLAIE +V+P G VEL+PR + Q ELV Y+L + G + RL++ P
Sbjct: 481 LEECRLAIEQVVMPQGRPVELVPRTERVRGMQAELVNRYRLRCDVFGQAEHCRLRVFP 538
>gi|383761637|ref|YP_005440619.1| hypothetical protein CLDAP_06820 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381381905|dbj|BAL98721.1| hypothetical protein CLDAP_06820 [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 542
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 245/558 (43%), Positives = 338/558 (60%), Gaps = 43/558 (7%)
Query: 107 LLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGD 166
+LP R+RR L +LIEV+MDLGR P ARF G+ V+S+Q V EDL + +VGD
Sbjct: 16 VLPERIRRALEQSERKENLIEVIMDLGRLPEARFTDGEMVLSDQEVTREDLNRVVERVGD 75
Query: 167 FSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPP 226
F DNR+GI+R+LHRISAIRNRK VIGLTCRVGRAV G+ EII D+V SIL++G P
Sbjct: 76 FGADNRAGIERTLHRISAIRNRKGDVIGLTCRVGRAVYGAIEIIKDIVNSDRSILLLGRP 135
Query: 227 GVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSV 286
GVGKTTL+RE AR+ ++ +KRVVIVDTSNEI GDGD+PH IGR+RRMQVP+ ++QH +
Sbjct: 136 GVGKTTLLREAARLRSE--VKRVVIVDTSNEIAGDGDIPHPAIGRSRRMQVPDPSLQHEL 193
Query: 287 MIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVG 346
MIEAVENHMPE IIIDEIG E EA+AA TIA+RGVQL+GTAHG +++N++ NP+L LVG
Sbjct: 194 MIEAVENHMPEVIIIDEIGREQEAIAARTIAERGVQLIGTAHGNSLENLLMNPTLSDLVG 253
Query: 347 GIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKL 406
GIESVTL DEEA++R QK++LER+ PPTF +E+ R +HH + VDAIL G+
Sbjct: 254 GIESVTLSDEEARRRGTQKSVLERRAPPTFDVLIEIKDRQHLVIHHDVAQAVDAILRGRE 313
Query: 407 PLFEVRQMDAE---HHEPLKVTP---ILRGSYPEESELTI-NEDKSAEMESDEDSEDEDY 459
+ E R +D + H L+ TP G + E I E + E + + D
Sbjct: 314 LIPEERFVDEQGVIHVRRLETTPEHSDFSGRLRRKREREIVGEPFARETNGHPYTGEIDA 373
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
A K+R + K S + +Y Y + + L A + + + + D++ ADA++
Sbjct: 374 AGAPHKDRDAAPELLKRS-TIRIYPYGVGQNRLRAAATALNV--PLQIVDNLNIADAVMT 430
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDI 579
+ +Q P A+ +PV++++SNT AQM + + I +
Sbjct: 431 LKNYYRQQPAPIQEAERRGIPVYILRSNTTAQMEQILVDIFNI----------------- 473
Query: 580 EIEDDAPKRKPTLEEIDALEE-VRLAIEYI--VIPGGEAVELLPRRSEIVARQLELVESY 636
++ IDA EE +R E I V+ G V L P+ + I ++Q +LV +
Sbjct: 474 -----------AVDPIDAFEEAMRETQEGIQRVLNGASDVTLSPQSAAIRSQQHQLVRAA 522
Query: 637 QLAAENSGTELNPRLQIL 654
L + + G E R++I
Sbjct: 523 NLISHSYGREPYRRVRIF 540
>gi|269925800|ref|YP_003322423.1| single-stranded nucleic acid binding R3H domain-containing protein
[Thermobaculum terrenum ATCC BAA-798]
gi|269789460|gb|ACZ41601.1| single-stranded nucleic acid binding R3H domain protein
[Thermobaculum terrenum ATCC BAA-798]
Length = 551
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 253/562 (45%), Positives = 331/562 (58%), Gaps = 54/562 (9%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L +P R+ R L +L DLIEVVMDLGR P ARFP + + + V HEDL++
Sbjct: 18 DLDAMLAAIPPRISRPLKEMPDLPDLIEVVMDLGRLPEARFPHREVTLGDNEVTHEDLRY 77
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
IS++G F DDNR+GI+R+LHRISAIRNRK VIG+TCRVGRAV G+ II DLVE G S
Sbjct: 78 VISRIGSFGDDNRAGIERTLHRISAIRNRKGDVIGITCRVGRAVMGTINIIRDLVETGKS 137
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT++RE+AR+L++D KRV+IVDTSNEI GDGD+PH IGRARRMQVP
Sbjct: 138 ILILGRPGVGKTTMLREVARVLSEDLRKRVIIVDTSNEIAGDGDIPHPAIGRARRMQVPT 197
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+MQH+VMIEAVENHMPE IIIDEIGTELEA AA TIA+RGVQL+GTAHG T++N++ NP
Sbjct: 198 PSMQHAVMIEAVENHMPEVIIIDEIGTELEAAAARTIAERGVQLIGTAHGNTLENLMMNP 257
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI+SVTLGDEEAK+R QK+ILERK PPTF VE+ R +H + TVD
Sbjct: 258 TLSDLIGGIQSVTLGDEEAKRRGTQKSILERKAPPTFNILVEIQDRDRVAIHPDVAETVD 317
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRG--SYPEESELTINEDKSAEMESDEDSE-D 456
AIL G EVR DA I RG SY E S +E+ DS D
Sbjct: 318 AILRGYEIKPEVRWRDATGK-----VHIERGVASY-------FQERPSRRLENRMDSGID 365
Query: 457 EDYASNQFKNRSIKRSVRKPS------------PPVCVYTYRILEADLLQVAKVMGLEDE 504
+ ++I R+ ++ S P VY + + L Q A MG+
Sbjct: 366 RKSVPVTTETQNIPRNTKQESEETLPEAQEPIIKPKKVYPFGVSRNKLEQAAIRMGV--P 423
Query: 505 IDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMES 564
I + ++ A+ ++ + ++ P A V+V+++N+ + + +
Sbjct: 424 IIIVKNLDEAEVVITVDNYYRKAPPAIKDAGTRGKSVYVLRTNSATHIERLL-------- 475
Query: 565 FGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSE 624
S I I D P L EE I +P AV+L P+
Sbjct: 476 ---------SSLFHIPIPVD-----PVLSAQYEAEEAAQKILNDEVP---AVKLSPQTHS 518
Query: 625 IVARQLELVESYQLAAENSGTE 646
I Q ++ E Y L + +SG E
Sbjct: 519 IRRMQHQIAERYNLQSRSSGKE 540
>gi|302835702|ref|XP_002949412.1| hypothetical protein VOLCADRAFT_89849 [Volvox carteri f. nagariensis]
gi|300265239|gb|EFJ49431.1| hypothetical protein VOLCADRAFT_89849 [Volvox carteri f. nagariensis]
Length = 2804
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/318 (62%), Positives = 246/318 (77%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
EL ++LLPS +R L H ++ +L+EVVMDLGR PLARFP+GD +S+Q + +DL+
Sbjct: 2101 ELMKLVQLLPSSVRSALEDHPDMLELLEVVMDLGRPPLARFPTGDEKLSQQPITADDLEF 2160
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
A+ +VG+F DNR+GIDR+LHRIS +RNR ++IGLTCRVGRAV GSA ++ DLV G S
Sbjct: 2161 AVRQVGEFGGDNRAGIDRTLHRISCMRNRTGRIIGLTCRVGRAVKGSALMVRDLVLSGAS 2220
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT IRE++RMLAD+ KRVVIVDTSNEIGGDGD+PHSGIGRARRMQV
Sbjct: 2221 ILLLGRPGVGKTTAIREVSRMLADECSKRVVIVDTSNEIGGDGDIPHSGIGRARRMQVAA 2280
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH VMIEAVENHMP+ I+IDEIGT E AA TIAQRGVQLV TAHG ++N++KNP
Sbjct: 2281 PEAQHRVMIEAVENHMPQVIVIDEIGTAEECAAARTIAQRGVQLVATAHGNQLENVIKNP 2340
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
L LVGGI+SVTLGDEEAK+R VQK+ILER PPTF +EM+ RT+ RVH + VD
Sbjct: 2341 QLADLVGGIQSVTLGDEEAKRRGVQKSILERAAPPTFDVCIEMLERTKWRVHLDVGQAVD 2400
Query: 400 AILAGKLPLFEVRQMDAE 417
+LAG +VR+ A+
Sbjct: 2401 VVLAGGDAGGQVRERAAD 2418
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 51/82 (62%)
Query: 482 VYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPV 541
+Y Y + E L V M L ++ +T + ADA+LA +++KQN +R +A+ + +P+
Sbjct: 2560 LYPYELDEDVLWDVLCDMRLLGKVFITTSLSKADAVLALRAKVKQNSELRAMARENGVPI 2619
Query: 542 FVIKSNTMAQMVKAVRMILGME 563
+ +K++ A +VKA R ++G++
Sbjct: 2620 YAVKTSGSANLVKAFRTLMGID 2641
>gi|309792154|ref|ZP_07686626.1| single-stranded nucleic acid binding R3H domain-containing protein
[Oscillochloris trichoides DG-6]
gi|308225695|gb|EFO79451.1| single-stranded nucleic acid binding R3H domain-containing protein
[Oscillochloris trichoides DG6]
Length = 552
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 246/563 (43%), Positives = 347/563 (61%), Gaps = 33/563 (5%)
Query: 101 LELFLELLPSRMRREL-CMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
++L LE LP + + + DL+E+VMDLGR P AR+ + + +S++ V +++ +
Sbjct: 11 IDLLLEALPVHITAAIQASTLDPDDLLEIVMDLGRLPEARYRNEERFLSDREVTQDEIDY 70
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I ++G F +DNR+GI R+LHRISAIRNR+ VIGLTCRVGRA+ G+ II DLVE G S
Sbjct: 71 VIERIGVFGEDNRAGIPRTLHRISAIRNRRGTVIGLTCRVGRAIFGTVTIIRDLVETGKS 130
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PG GKTTL+RE AR+LA++ KRVVIVDTSNEI GDGD+PH GIGRARRMQVP
Sbjct: 131 ILLLGKPGTGKTTLLRETARVLAEEFRKRVVIVDTSNEIAGDGDIPHPGIGRARRMQVPR 190
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH+VMIEAVENHMPE I+IDEIGTELEA+AA TIA+RGVQLVGTAHG T+DN++ NP
Sbjct: 191 PAEQHAVMIEAVENHMPEVIVIDEIGTELEAMAARTIAERGVQLVGTAHGNTLDNLMINP 250
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGDEEA++R QKT+LERK PPTF +E+ S V+ + A VD
Sbjct: 251 TLSDLVGGIQAVTLGDEEARRRGTQKTVLERKAPPTFDILIEIESWDSVTVYDDVAAAVD 310
Query: 400 AILAGKLPLFEVRQMDAE---HHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSED 456
AIL G+ P E+R DA+ H E ++ I + P + E + S
Sbjct: 311 AILRGEDPPAELRSRDADGVVHVETVQRELI---NAPALGRRILPTRGGGERGASSGSGS 367
Query: 457 EDYASNQFKNRSIKRSVRKPSP---PVCVYTYRILEA-DLLQVAKVMGLEDEIDVTDDIG 512
E +A + + + S P+ P V R+ A + L+V V+ + D D T +
Sbjct: 368 ERFAGPRRERGAAASSANGPTQRIFPFGVSRNRLETAIERLRVPAVI-VRDMKDATLVMT 426
Query: 513 TADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLP 572
+ S+ +KQ A+ H +PV+V+++NT+ QM + ++++
Sbjct: 427 LKNYYRQSAQRLKQ-------AEEHGVPVYVLRNNTITQMER------------QLAQVF 467
Query: 573 NKSTSDIEIEDDAPKRKPTLEEI--DALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQL 630
N ++ + + R+ E+ DA+ E+ AI ++ AVEL PR S I Q
Sbjct: 468 NLRLAEEDERGEGENRRSNGSEVIEDAMVELENAINQVMSGERNAVELAPRSSYIRRLQH 527
Query: 631 ELVESYQLAAENSGTELNPRLQI 653
++ + Y L +E+ G + N R++I
Sbjct: 528 QMADRYNLRSESRGDDPNRRVKI 550
>gi|254432798|ref|ZP_05046501.1| ATPase [Cyanobium sp. PCC 7001]
gi|197627251|gb|EDY39810.1| ATPase [Cyanobium sp. PCC 7001]
Length = 579
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 247/594 (41%), Positives = 350/594 (58%), Gaps = 44/594 (7%)
Query: 83 VSDSPNSASTSRSGADI------ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKP 136
+S P +A +S GAD +L+ L +LP+ ++ L L+EVV+DLGR P
Sbjct: 8 ISLMPQTAGSS--GADAGQGVTDDLDRLLAVLPAPVQAALASAESRAHLLEVVLDLGRLP 65
Query: 137 LARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLT 196
AR+P ++ ++ V+ DL + ++G F DNR+GI +LHRISAIRNR ++GLT
Sbjct: 66 EARYPGRAALLGDRPVERSDLDAVVDQLGAFGADNRAGIACTLHRISAIRNRIGTIVGLT 125
Query: 197 CRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN 256
CRVGRAV G+ ++ DL++ G S+L++G PGVGKTT +REIAR+LADD KRVV++DTSN
Sbjct: 126 CRVGRAVFGTVVMVRDLLDSGQSLLLMGRPGVGKTTALREIARVLADDLGKRVVVIDTSN 185
Query: 257 EIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI 316
EI GDGD+PH IGRARRMQV ++QH VMIEAVENHMPE I+IDEIGTE EA AA TI
Sbjct: 186 EIAGDGDIPHPAIGRARRMQVVRPDLQHEVMIEAVENHMPEVIVIDEIGTEREAQAARTI 245
Query: 317 AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTF 376
A+RGV LV TAHG + N++KNP+L LVGGI+SVTLGDEEA++R+ QKT+LER PTF
Sbjct: 246 AERGVMLVATAHGNELTNLIKNPTLSDLVGGIQSVTLGDEEARRRRTQKTVLERAAEPTF 305
Query: 377 TCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHH---------EPLKVT-- 425
AVEM SR +H + TVD +L G+ +VR++ + P V+
Sbjct: 306 PLAVEMHSRHRWLIHRDVAQTVDGLLRGQTARPQVRELGPDGRLQLQDDLPARPHSVSRP 365
Query: 426 ---PILRGSYPEE-SELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVC 481
P +R S E + L + E +A ++ S S + + P+ P+
Sbjct: 366 LPPPAVRASGTEAPAGLPLRE--AARHQAAPASPPPLEPSLAAAASAPPPASTGPA-PLR 422
Query: 482 VYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPV 541
VY I + L QV + L + V + AD +L++ ++ ++P +R +A+ LP+
Sbjct: 423 VYGAGISRSTLEQVVRARQL--PVAVVGSVELADVVLSARQQLGRDPHVRRLAQDLGLPI 480
Query: 542 FVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEV 601
VIKS M Q+ +A+ +L P + + + DD + ALEE
Sbjct: 481 LVIKSGAMPQVQRALERLLARHR-------PQEPSVSVPEGDDT---------LAALEEC 524
Query: 602 RLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
RLA+E++V+ G+ VELLPR + Q EL Y++ G + RL++ P
Sbjct: 525 RLAVEHVVLAQGQPVELLPRSERVRQLQRELASRYRVRTAVFGPSGDQRLRLFP 578
>gi|189095330|ref|YP_001936343.1| conserved hypothetical plastid protein Ycf45 [Heterosigma akashiwo]
gi|157694673|gb|ABV65949.1| conserved hypothetical plastid protein Ycf45 [Heterosigma akashiwo]
gi|157777904|gb|ABV70090.1| conserved hypothetical plastid protein Ycf45 [Heterosigma akashiwo]
Length = 451
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/463 (43%), Positives = 296/463 (63%), Gaps = 22/463 (4%)
Query: 97 ADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHED 156
D +L ++ P+ +R + H +LIEVV+DLG+KP RF G +S +IV +D
Sbjct: 3 VDEDLTKLFQVFPNYLRIAIQYHSNRLNLIEVVLDLGKKPEGRFFDGTSYLSNRIVSWQD 62
Query: 157 LKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEG 216
L +V +F+DDNR+GI+R+LHRIS +RNRK +IGLTCRVGR++ G+ I+ DL+
Sbjct: 63 LDFCTKQVSNFNDDNRAGIERTLHRISCLRNRKGVIIGLTCRVGRSLFGTVSIVRDLLSS 122
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
SIL++G PGVGKTT IREIAR+L+D+ KRVVIVDTSNEIGG+ D+PHSGIGRARRMQ
Sbjct: 123 NQSILILGKPGVGKTTTIREIARILSDELRKRVVIVDTSNEIGGNSDIPHSGIGRARRMQ 182
Query: 277 VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336
V +QH+VM+EAVENHMPE II+DEIGT+LE LA TIA+RGVQ++GT HG ++N++
Sbjct: 183 VSKSELQHNVMVEAVENHMPEVIIVDEIGTDLEVLAVRTIAERGVQVIGTVHGNNLENLI 242
Query: 337 KNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDA 396
KNP L +VGG+++V LGDEEAKKR QK +LERK PP+F A+E+ + VH +
Sbjct: 243 KNPILMDIVGGVQNVILGDEEAKKRGTQKNVLERKAPPSFQIAIEINQKMNWFVHENITQ 302
Query: 397 TVDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSED 456
+VD +L + P + R++ + S+++I ++K++ + +
Sbjct: 303 SVDRLLQKQFPYLQSRKI------------------TKNSKISIYQNKNSRYSLENRTTK 344
Query: 457 EDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADA 516
N ++ + ++ K S V +Y+Y I + Q+++ G + T DI A A
Sbjct: 345 SKLILNSDQDETT--TLLKNSQQVSIYSYSISINKVQQISESFGF--SLFFTKDINKATA 400
Query: 517 ILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMI 559
ILA S + +N + +AK ++P++ +K NT Q+ K + I
Sbjct: 401 ILALKSYINENQKLLTMAKSKKIPIYTVKKNTAPQIAKILTQI 443
>gi|219849802|ref|YP_002464235.1| single-stranded nucleic acid binding R3H domain-containing protein
[Chloroflexus aggregans DSM 9485]
gi|219544061|gb|ACL25799.1| single-stranded nucleic acid binding R3H domain protein
[Chloroflexus aggregans DSM 9485]
Length = 540
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 247/564 (43%), Positives = 340/564 (60%), Gaps = 42/564 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+++L L LP +R + + +L+E+VMDLGR P AR+ + +S++ V ED+ +
Sbjct: 9 DIQLLLATLPPAIRDAIQKANDQDNLLEIVMDLGRLPEARYRGHELFLSDREVTAEDINY 68
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I+++G+F +DNR+GI R+LHRIS IRNR+ VIGLTCRVGRAV G+ +II DLVE G S
Sbjct: 69 VIARIGEFGEDNRAGIPRTLHRISGIRNRRGVVIGLTCRVGRAVYGTVDIIRDLVETGQS 128
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PG GKTTL+RE AR+L D+ KRVVIVDTSNEI GDGD+PH GIGRARRMQVP
Sbjct: 129 ILLLGKPGTGKTTLLRETARVLGDELRKRVVIVDTSNEIAGDGDIPHPGIGRARRMQVPR 188
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+ QH+VMIEAVENHMPE I+IDEIGTELEA AA TIA+RGVQL+GTAHG T+DN++ NP
Sbjct: 189 PSEQHNVMIEAVENHMPEVIVIDEIGTELEAAAARTIAERGVQLIGTAHGNTLDNLMINP 248
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGDEEA++R QKT+LERK PPTF+ VE+ S V+ + A VD
Sbjct: 249 TLSDLVGGIQAVTLGDEEARRRGTQKTVLERKAPPTFSILVEIQSWDSVTVYPDVAAAVD 308
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
AIL G+ P E Q E ++ P+ R I+ S E
Sbjct: 309 AILRGEEPPCE--QRIREPDGTVRREPVRRA--------LIDAPAFGFRRSRGGREQSQM 358
Query: 460 ASN----QFKNRSIKRSVRKPSP----PVCVYTYRILEA-DLLQVAKVMGLEDEIDVTDD 510
+N + +N S+ SV P P V R+ A + L+V V+ + D D T
Sbjct: 359 GTNGPRLRDRNGSMTGSVTTVPPQRIFPFGVSRNRLQNAIERLRVPAVI-VRDLKDATLV 417
Query: 511 IGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISK 570
+ + SS +++Q A+ +PV+V+++NT+ QM + + + +
Sbjct: 418 MTLKNYYRQSSHQLRQ-------AEEQGVPVYVLRNNTITQMERQLAQVFQLREMFDDEA 470
Query: 571 LPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQL 630
++S S IE +AL E AI ++ AVEL PR S I Q
Sbjct: 471 EYSRSDSVIE---------------EALLETEQAIAQVINGERNAVELTPRSSYIRRLQH 515
Query: 631 ELVESYQLAAENSGTELNPRLQIL 654
++ + Y L +E+ G + N R++I
Sbjct: 516 QMADRYNLRSESRGDDPNRRVKIF 539
>gi|148657339|ref|YP_001277544.1| single-stranded nucleic acid binding R3H domain-containing protein
[Roseiflexus sp. RS-1]
gi|148569449|gb|ABQ91594.1| single-stranded nucleic acid binding R3H domain protein
[Roseiflexus sp. RS-1]
Length = 538
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 243/561 (43%), Positives = 343/561 (61%), Gaps = 41/561 (7%)
Query: 101 LELFLELLPSRMRRELCMHRELG-----DLIEVVMDLGRKPLARFPSGDWVISEQIVKHE 155
+EL L LP+ +R+ + E G DL+EV+MDLGR P AR+ + + +S++ V E
Sbjct: 11 IELLLATLPAPIRQAI----ETGPDDREDLLEVIMDLGRLPEARYRNHERFLSDREVTQE 66
Query: 156 DLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVE 215
D+ + I ++G F +DNR+GI R+LHRISAIRNR +VIGLTCRVGRAV G+ I+ DL+E
Sbjct: 67 DIDYVIGRIGAFGEDNRAGIPRTLHRISAIRNRTGRVIGLTCRVGRAVFGTITILRDLIE 126
Query: 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRM 275
G S+L++G PGVGKTT++RE AR+LA+D KRVVIVDTSNEI GDGD+PH GIGRARRM
Sbjct: 127 SGKSVLLLGRPGVGKTTMLRETARVLAEDLRKRVVIVDTSNEIAGDGDIPHPGIGRARRM 186
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
QVP + QH+VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQL+GTAHG T++N+
Sbjct: 187 QVPRPSEQHAVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLIGTAHGQTLENL 246
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLD 395
+ NP+L L+GGI++VTLGDEEA++R QKT+LERK PPTF VE+ + + V+ +
Sbjct: 247 LSNPTLSDLIGGIQAVTLGDEEARRRGTQKTVLERKAPPTFDILVEIQNWDQVTVYPDVA 306
Query: 396 ATVDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSY--PEESELTINEDKSAEMESDED 453
+ VD++L + P EVR+ A+ ++V P G + P + + S
Sbjct: 307 SAVDSLLRSEPPQAEVRRRTADGE--IEVFPAFTGEHAVPSIPGIRRGGGRERGERSPRV 364
Query: 454 SEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGT 513
S +S P +Y + + D L+ A + L + D+G
Sbjct: 365 SSAPAASSVGMT-------------PQRIYPFGV-SRDRLERA-IASLHVPATIVRDMGE 409
Query: 514 ADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPN 573
A ++ + +Q A+ +PV+V+++NT+AQM + + + IS N
Sbjct: 410 ATMVMTLKNYYRQGSQRVRQAEERGVPVYVLRNNTLAQMERQLADVF------NISLSDN 463
Query: 574 KSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELV 633
+ +DDA T+ E AL EV AI ++ +VEL P+ S + Q ++
Sbjct: 464 GLQRRADRDDDA-----TMTE--ALLEVETAITQVLNGERSSVELQPQSSYVRRLQHQMA 516
Query: 634 ESYQLAAENSGTELNPRLQIL 654
E Y L +E+ G E N R++I
Sbjct: 517 ERYNLQSESRGREPNRRVKIF 537
>gi|159897031|ref|YP_001543278.1| single-stranded nucleic acid binding R3H domain-containing protein
[Herpetosiphon aurantiacus DSM 785]
gi|159890070|gb|ABX03150.1| single-stranded nucleic acid binding R3H domain protein
[Herpetosiphon aurantiacus DSM 785]
Length = 565
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 244/580 (42%), Positives = 341/580 (58%), Gaps = 52/580 (8%)
Query: 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDW-VISEQIVKHEDLKH 159
++L L LP R+ L H + +IE+VMDLGR P ARF +SE V EDL +
Sbjct: 11 IDLLLSTLPPRLAEPLATHEQKDQVIEIVMDLGRLPEARFRHDQSSFLSETEVSREDLDY 70
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++G F +DNR+GI R+LHRISAIRNR VIGLTCRVGRAV G+ EI+ DLVE G S
Sbjct: 71 VTERIGQFGEDNRAGIQRTLHRISAIRNRSGVVIGLTCRVGRAVYGTIEIVRDLVEAGKS 130
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PG GKTT++RE+AR+LADD +KRVVIVDTSNEI GDGD+PH GIGRARRMQV
Sbjct: 131 ILILGKPGTGKTTMLREVARVLADDFLKRVVIVDTSNEIAGDGDIPHPGIGRARRMQVAR 190
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH+VMIEAVENHMP+ I+IDEIGTELEA AA TIA+RGVQLVGTAHG T++N++ NP
Sbjct: 191 PAEQHNVMIEAVENHMPQVIVIDEIGTELEAQAARTIAERGVQLVGTAHGNTLENLMLNP 250
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI++VTLGDEEA++R QKT+LERK PPTF VE+ S + ++ + + VD
Sbjct: 251 TLSDLIGGIQAVTLGDEEARRRGTQKTVLERKAPPTFDVLVEIQSWDDVTIYQEVASAVD 310
Query: 400 AILAGKLPLFEVRQMDAEH----HE--PLKV----TPIL--RGSYPEESELTINEDKSAE 447
+IL G P E R D + HE P ++ + +L RG Y + +
Sbjct: 311 SILQGNEPTAEQRTKDEQGEIVVHEGRPERLDSEASTMLTRRGGYRSRERDRDRDHGERD 370
Query: 448 MESDEDSEDEDYASNQFKNRSIKRS-----------VRKP--SPPVCVYTYRILEADLLQ 494
+ + + + ++ S V+KP + P ++ + + L +
Sbjct: 371 WRRKSERREAQREERERYSLALNGSTSPKTEEPSVLVKKPGKNAPAKIFAFGVSRNRLEK 430
Query: 495 VAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVK 554
+G+ + ++ A ++ + +Q+P A+ +PV+V++SNT QM +
Sbjct: 431 ALDRLGI--TASLVREMEQATMVITLKNYYRQHPTRLRDAEERGIPVYVLRSNTQTQMEE 488
Query: 555 AVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGE 614
LG S IS P+ S +A+EEV AI ++ E
Sbjct: 489 C----LG--SAFEISISPSDPLS------------------EAMEEVEEAISQVMDGSTE 524
Query: 615 AVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQIL 654
++EL P+ S + Q ++VE Y L +E++G E R++I
Sbjct: 525 SIELSPQSSYVRRLQHQIVERYNLQSESTGKEPRRRIRIF 564
>gi|270308090|ref|YP_003330148.1| R3H domain-containing protein [Dehalococcoides sp. VS]
gi|270153982|gb|ACZ61820.1| R3H domain protein [Dehalococcoides sp. VS]
Length = 537
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 241/558 (43%), Positives = 339/558 (60%), Gaps = 63/558 (11%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L LE+LP +R+ L +LIE+VMDLGR P ARFP + ++S + V ED+ +
Sbjct: 36 DLNALLEVLPPNIRQPLTNPANRENLIEIVMDLGRNPEARFPDREIILSNRDVTQEDIDY 95
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
S++GDF DDNR+GI+R+LHRISAIRNRK +++GLT RVGRAV G+ +II DL++ G S
Sbjct: 96 VSSRIGDFGDDNRAGIERTLHRISAIRNRKGKIVGLTLRVGRAVFGTIKIIQDLIQSGQS 155
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT++RE+AR+LA D KRVVIVDTSNEI GDGD+PH IG ARRMQV
Sbjct: 156 VLMLGRPGVGKTTMLREVARVLAGDLKKRVVIVDTSNEIAGDGDIPHPAIGHARRMQVRT 215
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+MQH+VMIEAVENHMP+ I+IDEIGTELEALAA TIA+RGVQLVGTAHG +DN++ NP
Sbjct: 216 PDMQHAVMIEAVENHMPQVIVIDEIGTELEALAARTIAERGVQLVGTAHGNVLDNLMLNP 275
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI+SVTLGDEEA++R QKTILER+ PPTF VE+ R + VH + A VD
Sbjct: 276 TLSDLIGGIQSVTLGDEEARRRGTQKTILERRAPPTFQVIVEIQERNKVAVHPDVGAAVD 335
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
+IL G P E+R +D E E+ I++ + +E + +E
Sbjct: 336 SILRGVSPSSEIRYLD------------------ENGEVVISKQQPSEEKIKTTAE---- 373
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
FK + + PV +Y + + + + ++A+ M L +I + + A ++
Sbjct: 374 GLPAFKGKEL---------PV-MYLFGVNRSRMEEIAREMHL--DIKLAERPEQAQLMVT 421
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDI 579
S + ++ P A+ +P++V+KS+T Q + + + G + T K P
Sbjct: 422 SRNYYRRKPQRVRDAENMNIPIYVLKSHTPGQFHQLLATLSGRDVAFTADKPP------- 474
Query: 580 EIEDDAPKRKPTLEEID-ALEEVRLAIEYIV---IPGGEAVELLPRRSEIVARQLELVES 635
EID A+ E AI + IP VEL P+ + I Q + E
Sbjct: 475 --------------EIDLAIHEAEEAIAQVKSSHIP----VELSPQGAYIRRFQHIIAEK 516
Query: 636 YQLAAENSGTELNPRLQI 653
L++ + G E + R++I
Sbjct: 517 EHLSSHSLGKEPHRRVRI 534
>gi|156743650|ref|YP_001433779.1| single-stranded nucleic acid binding R3H domain-containing protein
[Roseiflexus castenholzii DSM 13941]
gi|156234978|gb|ABU59761.1| single-stranded nucleic acid binding R3H domain protein
[Roseiflexus castenholzii DSM 13941]
Length = 538
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 238/560 (42%), Positives = 339/560 (60%), Gaps = 39/560 (6%)
Query: 101 LELFLELLPSRMRRELCMHRELG-----DLIEVVMDLGRKPLARFPSGDWVISEQIVKHE 155
+EL LE LP +R+ + E G DL+EV+MDLGR P AR+ + + +S V E
Sbjct: 11 IELLLETLPPPIRQAI----EAGPDDQEDLLEVIMDLGRLPEARYRNHERFLSNHEVTQE 66
Query: 156 DLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVE 215
D+ + I+++G F +DNR+GI R+LHRISAIRNR +VIGLTCRVGRAV G+ I+ DL+E
Sbjct: 67 DIDYVIARIGAFGEDNRAGIPRTLHRISAIRNRTGRVIGLTCRVGRAVFGTITILRDLIE 126
Query: 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRM 275
G S+L++G PGVGKTT++RE AR+LA++ KRVVIVDTSNEI GDGD+PH GIGRARRM
Sbjct: 127 SGKSVLLLGRPGVGKTTMLRETARVLAEELRKRVVIVDTSNEIAGDGDIPHPGIGRARRM 186
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
QVP + QH+VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQL+GTAHG T++N+
Sbjct: 187 QVPRPSEQHAVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLIGTAHGQTLENL 246
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLD 395
+ NP+L L+GGI++VTLGDEEA++R QKT+LERK PPTF VE+ + + V+ +
Sbjct: 247 LSNPTLSDLIGGIQAVTLGDEEARRRGTQKTVLERKAPPTFDILVEIQNWDQVTVYPDVA 306
Query: 396 ATVDAILAGKLPLFEVRQMDAEHH-EPLKVTPILRGSYPEESELTINEDKSAEMESDEDS 454
+ VD +L + P EVR+ A+ E + V+ + E M
Sbjct: 307 SAVDNLLRAESPRAEVRRRAADGQIEVVSVSAV--------------EQHIQTMPGMRRG 352
Query: 455 EDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTA 514
+ ++ ++ + P +Y + + D L+ A + L + D+G A
Sbjct: 353 GGRERGERGARSSAMLAPTQAGMAPQRIYPFGV-SRDRLERA-IATLHVPATIVRDMGEA 410
Query: 515 DAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNK 574
++ + +Q A+ +PV+V+++NT+AQM + + + IS N
Sbjct: 411 TMVMTLKNYYRQGAQRVRQAEERGVPVYVLRNNTLAQMERQLADVF------NISLNDNG 464
Query: 575 STSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVE 634
+ E +DD +AL EV AI ++ +VEL P+ S + Q ++ E
Sbjct: 465 AQRSAERDDDEAM-------TEALLEVETAITQVLNGERSSVELQPQSSYVRRLQHQMAE 517
Query: 635 SYQLAAENSGTELNPRLQIL 654
Y L +E+ G E N R++I
Sbjct: 518 RYNLQSESRGREPNRRVKIF 537
>gi|57234427|ref|YP_181509.1| R3H domain-containing protein [Dehalococcoides ethenogenes 195]
gi|57224875|gb|AAW39932.1| R3H domain protein [Dehalococcoides ethenogenes 195]
Length = 509
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 240/558 (43%), Positives = 338/558 (60%), Gaps = 63/558 (11%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L LE+LP +R+ + +LIE+VMDLGR P ARFP + ++SE+ V ED+ +
Sbjct: 8 DLNALLEVLPPHVRQPFANPADRENLIEIVMDLGRTPEARFPDREIILSERDVTQEDIDY 67
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
S++GDF DDNR+GI+R+LHRISAIRNRK +++GLT RVGRAV G+ +II DL++ G S
Sbjct: 68 VSSRIGDFGDDNRAGIERTLHRISAIRNRKGKIVGLTLRVGRAVFGTIKIIQDLIQSGQS 127
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT++RE+AR+LA D KRVVIVDTSNEI GDGD+PH IG ARRMQV
Sbjct: 128 VLMLGRPGVGKTTMLREVARVLAGDLKKRVVIVDTSNEIAGDGDIPHPAIGHARRMQVRT 187
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+MQH+VMIEAVENHMP+ I+IDEIGTELEALAA TIA+RGVQLVGTAHG +DN++ NP
Sbjct: 188 PDMQHAVMIEAVENHMPQVIVIDEIGTELEALAARTIAERGVQLVGTAHGNVLDNLMLNP 247
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI+SVTLGDEEA++R QKTILER+ PPTF VE+ R + VH + A VD
Sbjct: 248 TLSDLIGGIQSVTLGDEEARRRGTQKTILERRAPPTFQVIVEIQERNKVAVHPDVGAAVD 307
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
+IL G P E+R +D E E+ I++ + +E + +E
Sbjct: 308 SILRGVSPSSEIRYLD------------------ENGEVVISKQQPSEEKVKVAAE---- 345
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
S+ K P +Y + + + + ++A+ M L +I + + A ++
Sbjct: 346 --------SLPLPKGKELP--VMYLFGVNRSRMEEIAREMHL--DIKLAERPEQAQLMVT 393
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDI 579
S + ++ P A+ +P++V+KS+T Q + + + G + T K P
Sbjct: 394 SRNYYRRKPQRVRDAENMNIPIYVLKSHTPGQFHQLLATLSGRDVAFTADKPP------- 446
Query: 580 EIEDDAPKRKPTLEEID-ALEEVRLAIEYIV---IPGGEAVELLPRRSEIVARQLELVES 635
EID A+ E AI + IP VEL P+ + I Q + E
Sbjct: 447 --------------EIDLAIHEAEEAIAQVKSSHIP----VELSPQGAYIRRFQHIIAEK 488
Query: 636 YQLAAENSGTELNPRLQI 653
L++ + G E + R++I
Sbjct: 489 EHLSSHSLGKEPHRRVRI 506
>gi|320159578|ref|YP_004172802.1| hypothetical protein ANT_01680 [Anaerolinea thermophila UNI-1]
gi|319993431|dbj|BAJ62202.1| hypothetical protein ANT_01680 [Anaerolinea thermophila UNI-1]
Length = 538
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 236/559 (42%), Positives = 343/559 (61%), Gaps = 37/559 (6%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L + + +LP R+ + L+E+VMDLGRKP+ARF +GD V+ E+ V HEDL
Sbjct: 9 DLHVLMGVLPPRIAEAVQNANNSDQLLEIVMDLGRKPVARFTTGDLVLLEEEVTHEDLDF 68
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+S++G+F DNR+G++R+LHRISAIRNR+ ++GLTCRVGRAV G+ +II DL+E G S
Sbjct: 69 TVSRIGEFDADNRAGLERTLHRISAIRNRRGHIVGLTCRVGRAVYGTIDIIQDLIESGKS 128
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PG+GKTT++RE AR+LA+ KRVVIVDTSNEIGGDGDVPH +G ARRMQVP
Sbjct: 129 VLILGRPGIGKTTMLREAARILAEK--KRVVIVDTSNEIGGDGDVPHPAVGAARRMQVPK 186
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
++QH VMIEAVENH PE I+IDEIG ELEA AA TIA+RGVQL+GTAHG T++N++ NP
Sbjct: 187 PSLQHEVMIEAVENHNPEVIVIDEIGRELEAAAARTIAERGVQLIGTAHGRTLENLLLNP 246
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGIE+VTL DEEA++R QKT+LER+ PPTF +E+ R +H + A VD
Sbjct: 247 TLSDLVGGIEAVTLSDEEARRRGTQKTVLERRAPPTFDVLIEIQERDRLAIHPDVAAAVD 306
Query: 400 AILAGKLPLFEVRQMDAE---HHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSED 456
A++ E+R DAE H E P R Y + + + + +
Sbjct: 307 ALVRNNPLPPEIRYRDAEGNIHVEKPPAQPAARNGY---GAMQAGFRRLMSEPAGGRASE 363
Query: 457 EDYASNQFKNRSIKRSVRKPS-PPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTAD 515
Y S++ + S RS+R P+ +Y Y + L Q AK +G+ I ++ AD
Sbjct: 364 TAY-SHREEMESEPRSMRTERLQPIRIYPYGVARNRLQQGAKRLGVPALI--VRELAEAD 420
Query: 516 AILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKS 575
++ + + A+ +P++V+++NT Q+ + +++L N S
Sbjct: 421 VLITLRAYYRSRQQTILEAEQRGMPIYVLRANTNTQIEQ------------LLAELFNLS 468
Query: 576 TSDIEIEDDAPKRKPTLEEIDA-LEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVE 634
++ ED E+++A + + + AI+ +V+ G V+L P + I Q E+
Sbjct: 469 ---MQPEDG--------EDLEATIAQTQAAIQ-MVMNGERYVDLAPASAAIRRMQHEMAR 516
Query: 635 SYQLAAENSGTELNPRLQI 653
YQL + + G E N R++I
Sbjct: 517 QYQLTSHSYGKEPNRRVRI 535
>gi|411119520|ref|ZP_11391900.1| hypothetical protein OsccyDRAFT_3443 [Oscillatoriales
cyanobacterium JSC-12]
gi|410711383|gb|EKQ68890.1| hypothetical protein OsccyDRAFT_3443 [Oscillatoriales
cyanobacterium JSC-12]
Length = 661
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/337 (59%), Positives = 256/337 (75%), Gaps = 6/337 (1%)
Query: 85 DSPNSASTSRSGADIELEL------FLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLA 138
+S ++AST S A I+++ L +LP+ ++ +L H + L+EVVMDLGR+P A
Sbjct: 35 NSFSNASTVDSSASIDMQTTDDLNKLLHILPAPIQHKLREHPQRDTLVEVVMDLGRRPEA 94
Query: 139 RFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCR 198
RFP ++E V +D+ I++VGDF DNR+GI+R+LHRISAIRNR+ ++IGLTCR
Sbjct: 95 RFPGRAEYLAETPVSQQDINECIARVGDFGGDNRAGIERTLHRISAIRNRRGEIIGLTCR 154
Query: 199 VGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEI 258
VGRAV G+ +I DLVE G SIL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI
Sbjct: 155 VGRAVFGTIGMIRDLVESGKSILMLGRPGVGKTTALREIARVLADELDKRVVIIDTSNEI 214
Query: 259 GGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
GDGDVPH IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+
Sbjct: 215 AGDGDVPHPAIGRARRMQVARPELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAE 274
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTC 378
RGVQLVGTAHG ++N++KNP+L LVGGI+SVTLGDEEA++R QK++LERK PPTF
Sbjct: 275 RGVQLVGTAHGNRLENLIKNPTLSDLVGGIQSVTLGDEEARRRGSQKSVLERKAPPTFDI 334
Query: 379 AVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMD 415
AVEM+ R VH + T+D++L G+ P +VR ++
Sbjct: 335 AVEMLERQRWVVHEHVAETIDSLLRGRQPNPQVRTIN 371
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 101/176 (57%), Gaps = 12/176 (6%)
Query: 480 VCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQL 539
+ +Y Y + L QV + + L + +T DI ADA+LA S +K + +R +AK Q+
Sbjct: 497 LYLYPYGVSRHQLEQVVRTLNLP--VLLTKDIDNADAVLALRSHVKNHSKLRQIAKSRQI 554
Query: 540 PVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALE 599
P+ IK++++ Q+ + +R +L M+ G P D+ I+ D +EI+ALE
Sbjct: 555 PIHTIKASSIPQIARGLRRMLDMDDPGN----PEAVNLDLFIQGDND------DEIEALE 604
Query: 600 EVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
E RLA+E IVIP G+ VELLPR + + Q ELVE Y L + + G E N RL+I P
Sbjct: 605 EARLAVEQIVIPRGQPVELLPRSANVRKMQHELVEHYHLKSRSFGEEPNRRLRIYP 660
>gi|73748587|ref|YP_307826.1| single-stranded nucleic acid binding R3H domain-containing protein
[Dehalococcoides sp. CBDB1]
gi|289432613|ref|YP_003462486.1| single-stranded nucleic acid binding R3H domain-containing protein
[Dehalococcoides sp. GT]
gi|73660303|emb|CAI82910.1| single-stranded nucleic acid binding R3H domain protein
[Dehalococcoides sp. CBDB1]
gi|288946333|gb|ADC74030.1| single-stranded nucleic acid binding R3H domain protein
[Dehalococcoides sp. GT]
Length = 509
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 216/473 (45%), Positives = 303/473 (64%), Gaps = 34/473 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L LE+LP +R+ L +LIE+VMDLGR P ARFP + ++SE+ V ED+ +
Sbjct: 8 DLNALLEVLPPHIRQPLTDPANRKNLIEIVMDLGRTPEARFPDREIILSERDVTQEDIDY 67
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
S+ GDF DDNR+GI+R+LHRISAIRNRK +++GLT RVGRAV G+ +II DL++ S
Sbjct: 68 VSSRTGDFGDDNRAGIERTLHRISAIRNRKDKIVGLTLRVGRAVFGTIKIIQDLIKSDQS 127
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT++RE+AR+LA D KRVVIVDTSNEI GDGD+PH IG ARRMQV
Sbjct: 128 VLMLGRPGVGKTTMLREVARVLAGDLKKRVVIVDTSNEIAGDGDIPHPAIGHARRMQVRT 187
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+MQH+VMIEAVENHMP+ I+IDEIGTELEALAA TIA+RGVQLVGTAHG +DN++ NP
Sbjct: 188 PDMQHAVMIEAVENHMPQVIVIDEIGTELEALAARTIAERGVQLVGTAHGNVLDNLMLNP 247
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI+SVTLGDEEA++R QKTILER+ PPTF VE+ R + VH + A VD
Sbjct: 248 TLSDLIGGIQSVTLGDEEARRRGTQKTILERRAPPTFQVIVEIQDRNKVAVHPDVGAAVD 307
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
+IL G P E+R +D E+ I S + S+E +
Sbjct: 308 SILRGVSPSAEIRYLDG------------------NGEVVI----SKQQPSEEKVKSAPE 345
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
+ F+ + + +Y + + + + ++A+ M L +I +++ + A ++
Sbjct: 346 SLTVFRGKELP----------IMYLFGVNRSRMEEIAREMHL--DIQISERLEQAQLMVT 393
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLP 572
S + + P A+ +P++V+KS+T Q + + + G + + K P
Sbjct: 394 SRNYYRSKPQRVRDAENMNIPIYVLKSHTPGQFKQLLATLSGRDVAYAVEKPP 446
>gi|452205008|ref|YP_007485137.1| R3H domain-containing protein [Dehalococcoides mccartyi BTF08]
gi|452112064|gb|AGG07795.1| R3H domain-containing protein [Dehalococcoides mccartyi BTF08]
Length = 509
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 218/484 (45%), Positives = 308/484 (63%), Gaps = 34/484 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L LE+LP +R+ L +LIE+VMDLGR P ARFP + ++SE+ V ED+ +
Sbjct: 8 DLNALLEVLPPHIRQPLTDPANRENLIEIVMDLGRTPEARFPDREIILSERDVTQEDIDY 67
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
S++GDF DDNR+GI+R+LHRISAIRNRK +++GLT RVGRAV G+ +II DL++ S
Sbjct: 68 VSSRIGDFGDDNRAGIERTLHRISAIRNRKGKIVGLTLRVGRAVFGTIKIIQDLIKSDQS 127
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT++RE+AR+LA D KRVVIVDTSNEI GDGD+PH IG ARRMQV
Sbjct: 128 VLMLGRPGVGKTTMLREVARVLAGDLKKRVVIVDTSNEIAGDGDIPHPAIGHARRMQVRT 187
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+MQH+VMIEAVENHMP+ I+IDEIGTELEALAA TIA+RGVQLVGTAHG +DN++ NP
Sbjct: 188 PDMQHAVMIEAVENHMPQVIVIDEIGTELEALAARTIAERGVQLVGTAHGNVLDNLMLNP 247
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI+SVTLGDEEA++R QKTILER+ PPTF VE+ R + VH + A VD
Sbjct: 248 TLSDLIGGIQSVTLGDEEARRRGTQKTILERRAPPTFQVIVEIQDRNKVAVHPDVGAAVD 307
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
+IL G P E+R +D E+ I S + S+E +
Sbjct: 308 SILRGVSPSAEIRYLDGN------------------GEVVI----SKQQPSEEKVKSAPE 345
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
+ F+ + + +Y + + + + ++A+ M L+ I +++ + A ++
Sbjct: 346 SLPVFRGKELP----------IMYLFGVNRSRMEEIAREMHLD--IQISERLEQAQLMVT 393
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDI 579
S + + P A+ +P++V+KS+T Q + + + G + + K P +
Sbjct: 394 SRNYYRSKPQRVRDAENMNIPIYVLKSHTPGQFQQLLATLSGRDVAYAVEKPPEIDVAIH 453
Query: 580 EIED 583
E E+
Sbjct: 454 EAEE 457
>gi|452203573|ref|YP_007483706.1| R3H domain-containing protein [Dehalococcoides mccartyi DCMB5]
gi|452110632|gb|AGG06364.1| R3H domain-containing protein [Dehalococcoides mccartyi DCMB5]
Length = 509
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 216/473 (45%), Positives = 303/473 (64%), Gaps = 34/473 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L LE+LP +R+ L +LIE+VMDLGR P ARFP + ++SE+ V ED+ +
Sbjct: 8 DLNALLEVLPPHIRQPLTDPANRENLIEIVMDLGRTPEARFPDREIILSERDVTQEDIDY 67
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
S+ GDF DDNR+GI+R+LHRISAIRNRK +++GLT RVGRAV G+ +II DL++ S
Sbjct: 68 VSSRTGDFGDDNRAGIERTLHRISAIRNRKGKIVGLTLRVGRAVFGTIKIIQDLIKSDQS 127
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT++RE+AR+LA D KRVVIVDTSNEI GDGD+PH IG ARRMQV
Sbjct: 128 VLMLGRPGVGKTTMLREVARVLAGDLKKRVVIVDTSNEIAGDGDIPHPAIGHARRMQVRT 187
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+MQH+VMIEAVENHMP+ I+IDEIGTELEALAA TIA+RGVQLVGTAHG +DN++ NP
Sbjct: 188 PDMQHAVMIEAVENHMPQVIVIDEIGTELEALAARTIAERGVQLVGTAHGNVLDNLMLNP 247
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI+SVTLGDEEA++R QKTILER+ PPTF VE+ R + VH + A VD
Sbjct: 248 TLSDLIGGIQSVTLGDEEARRRGTQKTILERRAPPTFQVIVEIQDRNKVAVHPDVGAAVD 307
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
+IL G P E+R +D E+ I S + S+E +
Sbjct: 308 SILRGVSPSAEIRYLDG------------------NGEVVI----SKQQPSEEKVKSAPE 345
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
+ F+ + + +Y + + + + ++A+ M L +I +++ + A ++
Sbjct: 346 SLTVFRGKELP----------IMYLFGVNRSRMEEIAREMHL--DIQISERLEQAQLMVT 393
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLP 572
S + + P A+ +P++V+KS+T Q + + + G + + K P
Sbjct: 394 SRNYYRSKPQRVRDAENMNIPIYVLKSHTPGQFQQLLATLSGRDVAYAVEKPP 446
>gi|88807880|ref|ZP_01123391.1| hypothetical protein WH7805_06956 [Synechococcus sp. WH 7805]
gi|88787919|gb|EAR19075.1| hypothetical protein WH7805_06956 [Synechococcus sp. WH 7805]
Length = 546
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 238/562 (42%), Positives = 337/562 (59%), Gaps = 31/562 (5%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L LLP+ + R L L+EVV+DLGR P AR+P + E++++ +DL+
Sbjct: 9 DLQRLLSLLPASVGRVLEQDDHSDQLLEVVLDLGRLPEARYPGRSLALGERLLERKDLEE 68
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+ ++G F DNR+GI+R+LHRISAIRNR+ V+GLTCRVGRAV G+ ++ DL++ S
Sbjct: 69 MVDRLGQFGADNRAGIERTLHRISAIRNRRGDVVGLTCRVGRAVFGTVAMVRDLLDSDQS 128
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT +REIAR+LAD+ KRVV++DTSNEI GDGD+PH IGRARRMQV
Sbjct: 129 LLLMGRPGVGKTTALREIARVLADELQKRVVVIDTSNEIAGDGDIPHPAIGRARRMQVAR 188
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEA AA TIA+RGV LV TAHG + N++KNP
Sbjct: 189 PELQHQVMIEAVENHMPEVIVIDEIGTELEAQAARTIAERGVMLVATAHGNALTNLIKNP 248
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGIESVTLGDEEA++R+ QKT+LER PTF A+EM SR VH + TVD
Sbjct: 249 TLCDLVGGIESVTLGDEEARRRRSQKTVLERAAEPTFPIAIEMHSRHRWAVHDDVARTVD 308
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESE----LTINEDKSAEMESDEDSE 455
+L G+ P + R++ H +++ + P + L + + E S DS
Sbjct: 309 LLLRGQSPRPQEREL--TEHGSVRLVDSGVPNSPRAPQRRPALAVVPLPNPETGSTRDSH 366
Query: 456 --DEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGT 513
DE+ +++ V+ I L + + + DD+
Sbjct: 367 RRDEETGGRDRDAETLR-----------VFCCGISRQRLEEAVRCHRW--PVQAVDDLSA 413
Query: 514 ADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPN 573
AD +L+ + P +R A+ ++P+ VIKS+++ Q+ +A+ +L L
Sbjct: 414 ADVLLSVRQGLGCQPDLRRQAREAEVPILVIKSDSLPQVERALERLLSRRPLAGDQPLLP 473
Query: 574 KSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELV 633
S S++ D + ALEE RLA+E +V+P G VELLPR ++ Q +LV
Sbjct: 474 TSGSELGRAD----------ALAALEECRLAVEQVVMPEGRPVELLPRSDVVLQMQADLV 523
Query: 634 ESYQLAAENSGTELNPRLQILP 655
Y+L ++ G RL++ P
Sbjct: 524 ARYRLRSDVYGPSDQRRLRVFP 545
>gi|86605726|ref|YP_474489.1| R3H domain-containing protein [Synechococcus sp. JA-3-3Ab]
gi|86554268|gb|ABC99226.1| R3H domain protein [Synechococcus sp. JA-3-3Ab]
Length = 633
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/316 (61%), Positives = 245/316 (77%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L++LP+ +R+ L H +L L+EVV+DLGR+P ARFP +SE++V DL
Sbjct: 36 DLGKLLDVLPASIRQRLEQHPQLDRLVEVVLDLGRRPEARFPGFADYLSEEVVTRADLDL 95
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
IS+VG+FS DNR+GI +LHRISAIRNR+ +IGLTCRVGR V G +I DLVE G S
Sbjct: 96 VISQVGEFSGDNRAGIASTLHRISAIRNRQGTIIGLTCRVGRCVIGVISMIRDLVEQGRS 155
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT +REIAR+LAD+ KRV+I+DTSNEI GDGDVPH GIGRARRMQV +
Sbjct: 156 MLLLGRPGVGKTTALREIARVLADELHKRVIIIDTSNEIAGDGDVPHPGIGRARRMQVAS 215
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE ++IDEIGTELEALA+ TIA+RGVQLV TAHG IDN++KNP
Sbjct: 216 PELQHKVMIEAVENHMPEVVVIDEIGTELEALASRTIAERGVQLVATAHGNRIDNLIKNP 275
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI+SVTLGDEEA++R QK++LERK PPTF AVEM+ R +H + ATVD
Sbjct: 276 TLSDLIGGIQSVTLGDEEARRRGCQKSVLERKAPPTFEIAVEMLERDRWVIHEDVAATVD 335
Query: 400 AILAGKLPLFEVRQMD 415
+L + PL ++R +D
Sbjct: 336 RLLRNREPLVQLRSLD 351
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 101/177 (57%), Gaps = 13/177 (7%)
Query: 479 PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQ 538
P+ +Y Y + L QV + + L DVT D+ AD +LA S+++ I+ +A Q
Sbjct: 469 PLRIYPYGVSRFHLEQVIQTLKLS--ADVTKDLDEADIVLALRSQVRSRSKIQQLAHARQ 526
Query: 539 LPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDAL 598
+P+ +K+NT+ + +A+R IL +ES + S SD+E+ R + +E +AL
Sbjct: 527 IPIHTVKANTLIALARALRHILNIES-------EDGSDSDLELF----IRASSGDETEAL 575
Query: 599 EEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
EE RLA+E IVIP + VELLPR I Q +LVE Y L A++ G E N RL+I P
Sbjct: 576 EEARLAVEQIVIPKSQPVELLPRSPLIRKLQHQLVEHYHLRAQSFGEEPNRRLRIYP 632
>gi|307106236|gb|EFN54482.1| hypothetical protein CHLNCDRAFT_135149 [Chlorella variabilis]
Length = 581
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/331 (61%), Positives = 253/331 (76%), Gaps = 9/331 (2%)
Query: 91 STSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQ 150
++ S AD L+L + LLP +R++L H EL L+EVVMDLGR PLARFP GD ++E
Sbjct: 13 ASCSSTADEVLKL-VHLLPPAVRQQLRQHPELPQLLEVVMDLGRPPLARFPGGDVRLAEA 71
Query: 151 IVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEII 210
V EDL++A+ +VG+F DNR+GID++LHRIS IRNR +V+GLTCRVGRA++GSA ++
Sbjct: 72 AVSPEDLQYAVRQVGEFGGDNRAGIDKTLHRISCIRNRAGRVVGLTCRVGRAISGSAAMV 131
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIG 270
DL G S+L++G PGVGKTT IREI+R+LAD+ +RVV+VDTSNEIGGDGD+PH GIG
Sbjct: 132 ADLARDGKSVLLLGRPGVGKTTAIREISRLLADECQRRVVVVDTSNEIGGDGDIPHPGIG 191
Query: 271 RARRMQ---VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTA 327
ARRMQ VP+ QH VMIEAVENHMP TI+IDEIGTE E LAA TIAQRGVQLV TA
Sbjct: 192 GARRMQARAVPHPEQQHRVMIEAVENHMPSTIVIDEIGTEAECLAARTIAQRGVQLVATA 251
Query: 328 HGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTE 387
HG ++N+VKNPSL LVGGI SVTLGD+EAK+R VQK++LER+ PPTF VEM+SR +
Sbjct: 252 HGNELENVVKNPSLNDLVGGIASVTLGDDEAKRRGVQKSVLERQSPPTFDACVEMVSREQ 311
Query: 388 CRVHHRLDATVDAILAGKLPLF---EVRQMD 415
RVH LDA +++ + L EVR+ D
Sbjct: 312 WRVH--LDAAPALLVSHRTVLLRRAEVRERD 340
>gi|147669347|ref|YP_001214165.1| single-stranded nucleic acid binding R3H domain-containing protein
[Dehalococcoides sp. BAV1]
gi|146270295|gb|ABQ17287.1| single-stranded nucleic acid binding R3H domain protein
[Dehalococcoides sp. BAV1]
Length = 509
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/484 (45%), Positives = 307/484 (63%), Gaps = 34/484 (7%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L LE+LP +R+ L +LIE+VMDLGR P ARFP + ++SE+ V ED+ +
Sbjct: 8 DLNALLEVLPPHIRQPLTDPANRENLIEIVMDLGRTPEARFPDREIILSERDVTQEDIDY 67
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
S+ GDF DDNR+GI+R+LHRISAIRNRK +++GLT RVGRAV G+ +II DL++ S
Sbjct: 68 VSSRTGDFGDDNRAGIERTLHRISAIRNRKGKIVGLTLRVGRAVFGTIKIIQDLIKSDQS 127
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT++RE+AR+LA D KRVVIVDTSNEI GDGD+PH IG ARRMQV
Sbjct: 128 VLMLGRPGVGKTTMLREVARVLAGDLKKRVVIVDTSNEIAGDGDIPHPAIGHARRMQVRT 187
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+MQH+VMIEAVENHMP+ I+IDEIGTELEALAA TIA+RGVQLVGTAHG +DN++ NP
Sbjct: 188 PDMQHAVMIEAVENHMPQVIVIDEIGTELEALAARTIAERGVQLVGTAHGNVLDNLMLNP 247
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI+SVTLGDEEA++R QKTILER+ PPTF VE+ R + VH + A VD
Sbjct: 248 TLSDLIGGIQSVTLGDEEARRRGTQKTILERRAPPTFQVIVEIQDRNKVAVHPDVGAAVD 307
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
+IL G P E+R +D E+ I S + S+E +
Sbjct: 308 SILRGVSPSAEIRYLDG------------------NGEVVI----SKQQPSEEKVKSAPE 345
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
+ F+ + + +Y + + + + ++A+ M L +I +++ + A ++
Sbjct: 346 SLPVFRGKELP----------IMYLFGVNRSRMEEIAREMHL--DIRISERLEQAQLMVT 393
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDI 579
S + + P A+ +P++V+KS+T Q + + + G + + K P +
Sbjct: 394 SRNYYRSKPQRVRDAENMNIPIYVLKSHTPGQFQQLLATLSGRDVAYAVEKPPEIDVAIH 453
Query: 580 EIED 583
E E+
Sbjct: 454 EAEE 457
>gi|87300916|ref|ZP_01083758.1| hypothetical protein WH5701_05690 [Synechococcus sp. WH 5701]
gi|87284787|gb|EAQ76739.1| hypothetical protein WH5701_05690 [Synechococcus sp. WH 5701]
Length = 564
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 247/588 (42%), Positives = 337/588 (57%), Gaps = 45/588 (7%)
Query: 86 SPNSASTSRSGADI-------ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLA 138
SP+ AST + I +L+ LE+LP R+ L L+EVV+DLGR P A
Sbjct: 3 SPSVASTGEAARSITPQRITDDLDRLLEVLPERVGEALASPLSRDQLLEVVLDLGRSPEA 62
Query: 139 RFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCR 198
R+P ++ ++ + DL + ++G F DNR+GI+R+LHRISAIRNR +V+GLTCR
Sbjct: 63 RYPGRAQLLDQRPIDRADLAAVVQRLGSFGGDNRAGIERTLHRISAIRNRGGEVVGLTCR 122
Query: 199 VGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEI 258
VGRAV G+ ++ DL++ G S+L++G PGVGKTT +REIAR+LADD +RVV++DTSNEI
Sbjct: 123 VGRAVFGTVAMVRDLLDSGQSLLLMGRPGVGKTTALREIARVLADDLERRVVVIDTSNEI 182
Query: 259 GGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
GDGD+PH IGRARRMQV QH VMIEAVENHMPE I+IDEIGTELEA AA TIA+
Sbjct: 183 AGDGDIPHPAIGRARRMQVARPEQQHQVMIEAVENHMPEVIVIDEIGTELEAQAARTIAE 242
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTC 378
RGV LV TAHG + N++KNP+L L+GGI+SVTLGDEEA++R QKT+LER PTF
Sbjct: 243 RGVMLVATAHGNELANLIKNPTLADLIGGIQSVTLGDEEARRRGSQKTVLERCADPTFPL 302
Query: 379 AVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHH------EPLKVTPIL--RG 430
AVEM SR+ VH + TVD L G+ +VR++ ++ EP +P + RG
Sbjct: 303 AVEMHSRSRWLVHRDVARTVDQQLRGQPVRPQVRELGSDGRLRLNDPEPGPPSPRMPRRG 362
Query: 431 SYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEA 490
L D A + D RS + P + +Y +
Sbjct: 363 -------LVAAGDSPAPSPALAPVPLPDPELLPPHRRSAPPAPAAPP--LRLYCCGVSPQ 413
Query: 491 DLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMA 550
L QV + L + + ADA+L+ ++ + P +R A +P+ VIK++T+
Sbjct: 414 LLEQVVRSRQL--PVQRASQVEEADAVLSLRQQLGREPQVRSQALEQHVPILVIKADTLP 471
Query: 551 QMVKAVRMIL---GMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEY 607
Q+ + V +L G + G ST DDA A+EE RLA+E
Sbjct: 472 QIQRGVERLLRRRGGDGSGV-------STGPASAPDDA---------HGAMEECRLAVEQ 515
Query: 608 IVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
+V+ G VELLPR + Q + V Y L + G+ RL++ P
Sbjct: 516 VVLRQGRPVELLPRSPSVRRIQADQVNGYGLRSAEFGSGDLQRLRVFP 563
>gi|428218066|ref|YP_007102531.1| single-stranded nucleic acid binding R3H domain-containing protein
[Pseudanabaena sp. PCC 7367]
gi|427989848|gb|AFY70103.1| single-stranded nucleic acid binding R3H domain-containing protein
[Pseudanabaena sp. PCC 7367]
Length = 623
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/315 (59%), Positives = 242/315 (76%)
Query: 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHA 160
+E L +LP +R L +++ DL+EVV+DLGR P AR+ S +S+ V D+
Sbjct: 13 IEQLLAILPPHIRENLEQKKQIDDLVEVVLDLGRPPEARYTSAAVYLSDTPVTQADIDAC 72
Query: 161 ISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI 220
+ +VG+F DNR+GI+R+LHRISAIRNR+ +VIGLTCRVGRAV G++E+I DLVE G SI
Sbjct: 73 VDRVGEFGGDNRAGIERTLHRISAIRNRRGKVIGLTCRVGRAVYGTSEMIRDLVETGKSI 132
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNV 280
L++G PG+GKTT +RE+AR+LAD+ KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 133 LIMGRPGMGKTTALREVARVLADEMDKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAKP 192
Query: 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPS 340
+QH VM+EAVENHMPE IIIDEIGTELEALAA TIA+RGVQLVGTAHG + N++KNP+
Sbjct: 193 ELQHQVMVEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNKLANLIKNPT 252
Query: 341 LQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDA 400
L L+GGI+SVTLGD+EA++R QK+ILERK PPTF A+EM R VH + +T+D
Sbjct: 253 LSDLIGGIQSVTLGDDEARRRGTQKSILERKAPPTFEIAIEMGERYRWAVHEDVTSTIDG 312
Query: 401 ILAGKLPLFEVRQMD 415
+L G+ P ++R +D
Sbjct: 313 LLRGREPALQIRALD 327
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 12/176 (6%)
Query: 480 VCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQL 539
+ VY Y + QV + L VT DI +AD +LA S ++ N IR +A Q+
Sbjct: 459 LYVYLYGVSRHQAEQVIATLKLP--AIVTKDIDSADVVLALRSHVRNNSKIRNLATSRQV 516
Query: 540 PVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALE 599
P+ +KS+T++Q+ +A+R IL ++ + + + + + ED E++ALE
Sbjct: 517 PIHAVKSSTISQITRALRRILQIDEPAQVDEHDLQLFAYGDSED----------EMEALE 566
Query: 600 EVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
E RLA+E IVIP G+ VELLPR I Q ELVE Y L + + G E N RL+I P
Sbjct: 567 EARLAVEQIVIPKGQPVELLPRSPIIRKMQHELVEHYHLKSNSFGNEPNRRLRIYP 622
>gi|269836978|ref|YP_003319206.1| single-stranded nucleic acid binding R3H domain-containing protein
[Sphaerobacter thermophilus DSM 20745]
gi|269786241|gb|ACZ38384.1| single-stranded nucleic acid binding R3H domain protein
[Sphaerobacter thermophilus DSM 20745]
Length = 573
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 236/559 (42%), Positives = 336/559 (60%), Gaps = 20/559 (3%)
Query: 101 LELFLELLPSRMRRELCMH---RELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDL 157
LE L +LP + L E +LIE+V+DLGR P AR+P + +S++ V ED+
Sbjct: 24 LEDLLAVLPPHVVEALEAQSTPEERKELIEIVLDLGRPPEARYPDREVYLSDREVTREDI 83
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+ ++G F DDNR+GI+R+LHRISAIR+R Q++GLTCR+GRAV G+ I+ DLVE G
Sbjct: 84 AYVAERIGRFGDDNRAGIERTLHRISAIRSRSGQIVGLTCRIGRAVYGTIGIVRDLVESG 143
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
S+L++G PGVGKTT++RE AR+LADD KRV+IVDTSNEI GDGD+PH IGRARRMQV
Sbjct: 144 ESLLLLGRPGVGKTTMLRETARVLADDLGKRVIIVDTSNEIAGDGDIPHPSIGRARRMQV 203
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
P MQH+VMIEAVENHMPE I+IDEIGTELEA AA TIA+RGVQLVGTAHG T++N++
Sbjct: 204 PTPAMQHAVMIEAVENHMPEVIVIDEIGTELEAAAARTIAERGVQLVGTAHGNTLENLMM 263
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NP+L L+GGI+SVTL DEEA++R QK+ILERK PPTFT VE+ +R V+ + +
Sbjct: 264 NPTLSDLIGGIQSVTLSDEEARRRGTQKSILERKAPPTFTMMVEIQARDRVAVYRDVASA 323
Query: 398 VDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDE 457
VDAIL G+ EVRQ + + VT P +E + D+ + ++
Sbjct: 324 VDAILRGQPLRVEVRQRAPDGS--VTVT----YEQPYHAEHAADTDRRSGRRRGGEAMHP 377
Query: 458 DYASNQFKNRSIKRSVR-KPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADA 516
R + R+ R P P V+ + + L Q M V D+ AD
Sbjct: 378 AAEETAPVVRDVMRAGRGTPDRPARVFPFGVSRNRLEQAIHQMAA--PATVVRDLRDADV 435
Query: 517 ILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKST 576
++ + ++ P A+ +P++V+++NT+ QM +R + + ++ + +S
Sbjct: 436 VVTLKNYYRRRPQPLREAEARGIPIYVLRNNTIVQMANLLRSLFAEQLQSSVMR--QESE 493
Query: 577 SDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGG-EAVELLPRRSEIVARQLELVES 635
E E + P+ + +A + + V+ G +V+L P+ S + Q +L E
Sbjct: 494 RWDEEEAEVPEDRLAAAMFEAEAAI-----HDVLSGEVSSVDLRPQASHVRRLQHQLAER 548
Query: 636 YQLAAENSGTELNPRLQIL 654
Y LA+ + G E ++I
Sbjct: 549 YNLASRSRGREPQRYVEIF 567
>gi|452821468|gb|EME28498.1| [pt] hypothetical protein [Galdieria sulphuraria]
Length = 493
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 225/528 (42%), Positives = 321/528 (60%), Gaps = 41/528 (7%)
Query: 130 MDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRK 189
MDLG+KP ARF + IS + + +D+ + I ++G F+ DNR+GI +LHRIS+I NR+
Sbjct: 1 MDLGKKPEARFSDHVYYISNKNINWQDINYCIRRLGKFNVDNRTGIKNTLHRISSINNRE 60
Query: 190 MQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRV 249
QV+GLT RVGRAV G+ II DL+E G SIL++G PGVGKTT IREIAR+LAD+ KRV
Sbjct: 61 GQVVGLTYRVGRAVLGNINIIRDLLEIGHSILILGKPGVGKTTAIREIARILADEIGKRV 120
Query: 250 VIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELE 309
+I+DTSNEI GD D+ H IGRARRMQV + +QH VMIEA+ENHMPE IIIDEI TELE
Sbjct: 121 IIIDTSNEIAGDSDIGHFSIGRARRMQVKHPQLQHQVMIEAIENHMPEVIIIDEISTELE 180
Query: 310 ALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILE 369
A+AA TIA+RGVQL+GTAHG +++N+++N +L L+GGI+ VTLGDEEA+KR QK+ILE
Sbjct: 181 AIAARTIAERGVQLIGTAHGNSLENLIRNFTLSDLIGGIQYVTLGDEEARKRGTQKSILE 240
Query: 370 RKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVR--QMDAEHHEPLKVTPI 427
RK PTF +E+ R+H ++ VD IL G P+ + R +D +H I
Sbjct: 241 RKSFPTFNIVIEIHQLYSWRIHQDVEQNVDRILQGSRPILQDRFISLDNKH--------I 292
Query: 428 LRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKRSVRKPSPPVCVYTYRI 487
++ S +E+ IN +KS E S ++ ++ N+++ + + +Y + +
Sbjct: 293 IKYSQYNNNEI-INSNKSKLHSIKEHS---NHLLHELVNKNM-----NINHKIYLYLHSL 343
Query: 488 LEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSN 547
+ M L I +T + A+AIL + K P +R +AK ++P++VI +
Sbjct: 344 SYKETQSCIDNMQL--PIILTKSLDNANAILGLRIQTKNTPKLREIAKNKKIPIYVISNE 401
Query: 548 TMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEY 607
T+ Q++K ++ I+ F + K D+L+E+R+AI
Sbjct: 402 TIPQLIKVLKNIINSYDFKKVYK--------------------NTHIFDSLKEMRMAILN 441
Query: 608 IVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
IV+ + VELLPR + I Q L + L A + G E RL+I P
Sbjct: 442 IVLSKNQTVELLPRIAYIRKYQHILAGYFNLYAISVGKEPFRRLRIYP 489
>gi|206901965|ref|YP_002250502.1| single-stranded nucleic acid binding R3H [Dictyoglomus thermophilum
H-6-12]
gi|206741068|gb|ACI20126.1| single-stranded nucleic acid binding R3H [Dictyoglomus thermophilum
H-6-12]
Length = 515
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 245/556 (44%), Positives = 335/556 (60%), Gaps = 53/556 (9%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ FL + PS ++ L ++ DLIEVV+DLGR+ ARF V + EDL +
Sbjct: 11 DLDKFLAIFPSDIKSRLEQDPDIKDLIEVVLDLGREIEARFYKKTVVFEGRFTTEEDLNY 70
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I++VG+FS D R+GI+R+LHRISAI NR ++IGLTCRVGRAV G+ +II D++E G +
Sbjct: 71 IIARVGEFSGDKRAGIERTLHRISAIENRHGRIIGLTCRVGRAVLGTVDIIRDVIETGKN 130
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTTL+RE AR+LAD+ KRV+I+DTSNEIGGDGD+PH IGRARRMQVPN
Sbjct: 131 ILLLGRPGVGKTTLLRETARVLADELGKRVIIIDTSNEIGGDGDIPHPAIGRARRMQVPN 190
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH VMIEAVENHMPE I+IDEIGTELEA AA TIA+RGVQL+GTAHG+T+ N++ NP
Sbjct: 191 PAKQHDVMIEAVENHMPEVIVIDEIGTELEAKAARTIAERGVQLIGTAHGITLQNLLLNP 250
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI+ VTL DEEAK+R QKT+LERK PPTF +E+ R +HH + TVD
Sbjct: 251 TLSDLVGGIQVVTLSDEEAKRRGTQKTVLERKAPPTFQVVIEIQERDRLAIHHDVAKTVD 310
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
A+L G + + P +R PE E K E + E SE+E+
Sbjct: 311 ALLRGYI-----------------IKPEIRLRTPE------GEVKKVEAPTIEPSEEEEE 347
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
S K KR + P+ ++ Y I L + + +G+ V ++ A +L
Sbjct: 348 VSVFGKPEREKR-----TEPLKIFPYGISRNRLEKAIRNLGV--PAFVVKNLSEASCLLI 400
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDI 579
+ K+ + A+ + + V++SNT+ Q+ + + G+ S GT S SD
Sbjct: 401 LKAHQKRAKDLLKEAEKKGIKIAVLRSNTVTQIERFLSEEFGI-SVGT-------SKSDA 452
Query: 580 EIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLA 639
E E AL E + IEY V+ E EL P+ + I Q +L++ Y L
Sbjct: 453 EEE--------------ALREAQEGIEY-VLTHDEPYELSPQPAYIRRLQHQLIQQYGLY 497
Query: 640 AENSGTELNPRLQILP 655
+E+ G E +++I P
Sbjct: 498 SESVGVEPFRKVRIYP 513
>gi|217967175|ref|YP_002352681.1| single-stranded nucleic acid binding R3H domain-containing protein
[Dictyoglomus turgidum DSM 6724]
gi|217336274|gb|ACK42067.1| single-stranded nucleic acid binding R3H domain protein
[Dictyoglomus turgidum DSM 6724]
Length = 515
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 241/556 (43%), Positives = 336/556 (60%), Gaps = 53/556 (9%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ FL + P+ ++ L ++ DLIEVV+DLGR+ ARF + + EDL +
Sbjct: 11 DLDKFLAIFPNDIKNRLEQDPDIKDLIEVVLDLGREIEARFYKKTVIFEGRFTTEEDLNY 70
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I++VG+FS D R+GI+R+LHRISAI NR ++IGLTCRVGRAV G+ +II D++E G +
Sbjct: 71 IIARVGEFSGDKRAGIERTLHRISAIENRHGRIIGLTCRVGRAVLGTVDIIRDVIETGKN 130
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTTL+RE AR+LAD+ KRV+I+DTSNEIGGDGD+PH IGRARRMQVPN
Sbjct: 131 ILLLGKPGVGKTTLLRETARVLADELGKRVIIIDTSNEIGGDGDIPHPAIGRARRMQVPN 190
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+ QH VMIEAVENHMPE I+IDEIGTELEA AA TIA+RGVQL+GTAHG+T+ N++ NP
Sbjct: 191 PSKQHDVMIEAVENHMPEVIVIDEIGTELEAKAARTIAERGVQLIGTAHGITLQNLLLNP 250
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI+ VTL DEEAK+R QKT+LERK PPTF +E+ R +HH + TVD
Sbjct: 251 TLSDLVGGIQVVTLSDEEAKRRGTQKTVLERKAPPTFQVVIEIQERDRLAIHHDVAKTVD 310
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
A+L G + + P +R PE E K E + E E+E+
Sbjct: 311 ALLRGYI-----------------IKPEIRVRTPE------GEVKKVEAPTIEPVEEEEE 347
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
S K I+ K + P+ ++ Y I L + + +G+ V ++ A+ +L
Sbjct: 348 VSVFGKPEKIE----KRTEPLRIFPYGISRNRLEKAIRNLGV--PAFVVKNLSEANCLLI 401
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDI 579
+ K+ + A+ + + V++SNT+ Q+ + + E FG + S SD
Sbjct: 402 LKAHQKRAKDLLKEAEKKGIKIAVLRSNTVTQIERFLS-----EEFG----IAISSKSDA 452
Query: 580 EIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLA 639
E E AL E + IEY V+ E EL P+ + I Q +L++ Y L
Sbjct: 453 EEE--------------ALREAQEGIEY-VLTHDEPYELSPQPAYIRRLQHQLIQQYGLH 497
Query: 640 AENSGTELNPRLQILP 655
+E+ G E +++I P
Sbjct: 498 SESVGVEPFRKVRIYP 513
>gi|332295596|ref|YP_004437519.1| single-stranded nucleic acid binding R3H domain-containing protein
[Thermodesulfobium narugense DSM 14796]
gi|332178699|gb|AEE14388.1| single-stranded nucleic acid binding R3H domain-containing protein
[Thermodesulfobium narugense DSM 14796]
Length = 520
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 226/556 (40%), Positives = 335/556 (60%), Gaps = 47/556 (8%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L +++LP + + + L D++E+V+DLGR P RFP + I+ + V EDL++
Sbjct: 9 DLRCLIDILPDDFKYPILELKNLNDIVEIVLDLGRYPEVRFPEDAFEITTKQVTREDLQN 68
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+ KVG FS DNR+GI+R+LHRIS IRNR +++GLT RVGRAV G+ +II D+VE +
Sbjct: 69 VVKKVGVFSGDNRAGIERTLHRISCIRNRSGEIVGLTLRVGRAVFGTIDIIKDIVESKEN 128
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++GPPG+GKTT +REIAR+L+ D +RV+++DTSNEIGGDGD+PH IG++RRMQVP
Sbjct: 129 ILLMGPPGIGKTTKLREIARVLSVDMKRRVIVIDTSNEIGGDGDIPHPAIGKSRRMQVPT 188
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH+VMIEAVENHMP+ II+DEIGTELEA AA TIA+RGVQL+ TAHG ++ N++ NP
Sbjct: 189 PEKQHAVMIEAVENHMPQVIIVDEIGTELEAQAARTIAERGVQLIATAHGNSLVNLIMNP 248
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGG++ VTL DEEAK+R+ QKTI ERK PTF +E++ R + +H +D VD
Sbjct: 249 TLSDLVGGVQVVTLSDEEAKRRRTQKTIQERKTQPTFNVVIELLDREKMVIHKNVDKVVD 308
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDS-EDED 458
+L G+ EVR S + ++ I E + ME ED ED++
Sbjct: 309 QLLKGEQIRPEVR------------------SKSSDGKIIIEEHR---MELKEDKFEDKN 347
Query: 459 YASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAIL 518
+N R++ +V K + ++++ + + L +V+K + + ++ D+ AD ++
Sbjct: 348 SYNNLEAKRNLDVNVCKEF--LNIFSFGVSKDILERVSKELRV--STNIVKDLNVADVVI 403
Query: 519 ASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSD 578
+K + LPV+V++SNT+ Q K + I+ + S
Sbjct: 404 TLKGFLKSRGKFFDEVEDKNLPVYVMRSNTITQARKVLSEIIQLRS-------------- 449
Query: 579 IEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQL 638
+ ED E+ +AL E AI+ V+ +VEL PR + Q +LVE Y L
Sbjct: 450 VNFED------MDFEKFEALREAEEAIKK-VLRDKVSVELSPRNAYFRRLQHQLVEKYNL 502
Query: 639 AAENSGTELNPRLQIL 654
+E+ E R++I
Sbjct: 503 FSESLDEEPRRRVKIF 518
>gi|221632236|ref|YP_002521457.1| ATPase-like protein [Thermomicrobium roseum DSM 5159]
gi|221156979|gb|ACM06106.1| ATPase-like protein [Thermomicrobium roseum DSM 5159]
Length = 562
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 241/569 (42%), Positives = 340/569 (59%), Gaps = 39/569 (6%)
Query: 101 LELFLELLPSRM---RRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDL 157
LE L +LP + RE + L+E+V+DLGR+P ARF + ++++ + ED+
Sbjct: 10 LEDLLAVLPPDIVEALREYNSPEDRAKLLEIVLDLGRRPEARFEDREVYLADREITREDI 69
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+ S++G F DDNR+GI+R+LHRISAIR+R +++GLTCR+GRAV G+ II DL+E G
Sbjct: 70 AYVASRIGRFGDDNRAGIERTLHRISAIRSRSGEIVGLTCRIGRAVYGTVAIIRDLIESG 129
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
SIL++G PGVGKTT++RE AR+LADD KRV++VDTSNEI GDGD+PH IGRARRMQV
Sbjct: 130 ESILLLGRPGVGKTTMLRETARVLADDLRKRVIVVDTSNEIAGDGDIPHPAIGRARRMQV 189
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
P ++QH+VMIEAVENHMPE I+IDEIGTELEA AA TIA+RGVQL+GTAHG T++NI+
Sbjct: 190 PTPSLQHAVMIEAVENHMPEVIVIDEIGTELEAAAARTIAERGVQLIGTAHGNTLENIMM 249
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NP+L L+GGI+SVTL DEEA++R QK+ILERK PPTF VE+ SR VH + A
Sbjct: 250 NPTLSDLIGGIQSVTLSDEEARRRGTQKSILERKAPPTFGVLVEIQSRNRVAVHRDVAAA 309
Query: 398 VDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAE---MESDEDS 454
VDAIL G+ E+R+ + + G+ E +D+ AE + S
Sbjct: 310 VDAILRGQPLRVEIRERNPD------------GTVSIWYEELHGQDQRAERSMLPSGPRR 357
Query: 455 EDEDYASNQFKNRSIKRS-----VRKPSPPV----CVYTYRILEADLLQVAKVMGLEDEI 505
+ R S V PS P+ ++ + + L V + + L +
Sbjct: 358 TYQRIPGTPAPTRPATPSGTIVAVAPPSEPIRRTMRLFPFGVSRNRLEDVIRQLML--PV 415
Query: 506 DVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESF 565
++ ADA++ + ++ P + A+ +PV+V++SNT QM R + E F
Sbjct: 416 ELVRSPREADAVVTLKNYFRKRPQVLREAEQRGIPVYVLRSNTAQQMANLFRSLFP-ERF 474
Query: 566 GTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEA-VELLPRRSE 624
+ +S +D E+ A R I A E A + V+ G + +EL P+ +
Sbjct: 475 A--GEQEPESAADDGDENAAHDR------ILAAMEEAEAAAHQVLQGTRSRIELRPQEAW 526
Query: 625 IVARQLELVESYQLAAENSGTELNPRLQI 653
I Q +L E Y LA+ + G E R++I
Sbjct: 527 IRRLQHQLAERYNLASRSRGREPFRRVEI 555
>gi|118411037|ref|YP_874432.1| hypothetical protein PhtrCp075 [Phaeodactylum tricornutum]
gi|116739784|gb|ABK20655.1| conserved hypothetical protein [Phaeodactylum tricornutum]
Length = 454
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/461 (43%), Positives = 297/461 (64%), Gaps = 15/461 (3%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ +E LP+ +R L H LIE+V+DLGR+P ARF +G +S++I+ +D+ +
Sbjct: 6 DLDKLIENLPAFLREHLNQHDSKDQLIEIVLDLGRRPEARFITGPQYLSQKIISWQDIDY 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+V FS++NR+GI+R+LHRIS IRNR+ + GLTCRVGRAV G+ I DL+E S
Sbjct: 66 MTKRVSKFSNENRAGIERTLHRISCIRNRQFLINGLTCRVGRAVFGTISAIRDLLESEKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT+IREIAR+LAD+ KRV+I+DTSNEI GD D+PHSGIGRARRMQV
Sbjct: 126 ILILGKPGVGKTTIIREIARVLADEMEKRVIIIDTSNEIAGDSDIPHSGIGRARRMQVAK 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMP+ IIIDEIGTELE LAA TIA++GVQLVGT HG +DN++KNP
Sbjct: 186 TELQHQVMIEAVENHMPQVIIIDEIGTELEVLAARTIAEKGVQLVGTTHGNCLDNLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
SL L+GGI+ VTL D+EAK+R QK+ILERK P F +E+ +++ +H + +VD
Sbjct: 246 SLADLIGGIQYVTLSDDEAKRRGTQKSILERKAYPAFEIIIEINNQSSWTIHEDVKTSVD 305
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
L G + ++RQ +K L + L + +D + + E +++
Sbjct: 306 LFLRGSFFVGQIRQFALSEKINIKAQKFL-----NQQNLLLKKDSTDNLTLLE----KNW 356
Query: 460 AS-NQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAIL 518
S NQ + ++S+ S + +Y Y L +LL+ ++ + + +T++I A+ I+
Sbjct: 357 ISINQSR---YEKSLNLKSKTLIIYPYS-LSNNLLKEV-LLKMRVKFVLTNEIRKANLII 411
Query: 519 ASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMI 559
+ QN + +AK +P++ + + Q+ K ++ +
Sbjct: 412 GLKKHLNQNFKLTNLAKQKNIPIYSLNQVSFYQVSKLIQFL 452
>gi|118411121|ref|YP_874515.1| hypothetical protein ThpsCp026 [Thalassiosira pseudonana]
gi|224015786|ref|XP_002297541.1| hypothetical protein THAPSDRAFT_bd2063 [Thalassiosira pseudonana
CCMP1335]
gi|116739868|gb|ABK20738.1| conserved hypothetical protein [Thalassiosira pseudonana]
gi|220967805|gb|EED86181.1| hypothetical protein THAPSDRAFT_bd2063 [Thalassiosira pseudonana
CCMP1335]
Length = 454
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/463 (42%), Positives = 295/463 (63%), Gaps = 13/463 (2%)
Query: 98 DIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDL 157
D +LE L LP + L H LIE+V+DLGR+P ARF +G +S++I+ +D+
Sbjct: 4 DDDLEKLLNNLPFFIYHHLNTHANKEKLIEIVLDLGRRPEARFTTGPEYLSQKIISWQDI 63
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+ ++ FS +NR+GI+R+LHRIS IRNR+ + GLTCRVGRA+ G+ II DL+E G
Sbjct: 64 DYMTKRISKFSGENRAGIERTLHRISCIRNRQFLINGLTCRVGRAIFGTISIIRDLLESG 123
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
SIL++G PGVGKTT+IREIAR+L+D+ KRV+I+DTSNEI GD DVPHSGIGRARRMQV
Sbjct: 124 KSILILGRPGVGKTTIIREIARVLSDEMEKRVIIIDTSNEIAGDSDVPHSGIGRARRMQV 183
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
P +QH +M+EA+ENHMP+ I+IDEIGTELEALAA TIA++GVQLVGT HG ++N++K
Sbjct: 184 PKTELQHKIMLEAIENHMPQVIVIDEIGTELEALAARTIAEKGVQLVGTTHGNCLENLIK 243
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NPSL L+GGI+ VT+ DEEAK+R QK+ILERK P F A+E+ S + ++ ++ +
Sbjct: 244 NPSLSDLIGGIQYVTISDEEAKRRGTQKSILERKSYPAFQLAIEVNSLSSWTIYENVENS 303
Query: 398 VDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDE 457
VD IL G + ++R + + + + S + EM S +
Sbjct: 304 VDLILRGNFHIAQIRNLKKNEKLIINYKKFQKDFLIKNSRFL-----NKEMISIHKNW-- 356
Query: 458 DYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAI 517
+ N+ K RS+ + + +Y Y L +L++ ++ D+I T I A+ I
Sbjct: 357 -FLVNEPKR---IRSLNLKNTTLIIYPYS-LSKNLIR-EMLIQFGDKIIFTTQINQANLI 410
Query: 518 LASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMIL 560
+ ++QN ++ +A +P++ I ++ Q+++ ++ +
Sbjct: 411 IGLKKHLRQNFRLKSLANKQNIPIYTINQRSIYQIMRLLQFFI 453
>gi|330850845|ref|YP_004376595.1| hypothetical protein FispC_p030 [Fistulifera sp. JPCC DA0580]
gi|328835665|dbj|BAK18961.1| conserved hypothetical protein [Fistulifera sp. JPCC DA0580]
Length = 456
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 202/462 (43%), Positives = 295/462 (63%), Gaps = 11/462 (2%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+LE ++ LP ++ L H LIE+V+DLGR+P ARF SG +S++I+ +D+ +
Sbjct: 6 DLEKLIDNLPVFLQEHLNQHPNKEQLIEIVLDLGRRPEARFVSGPEYLSQKIISWQDIDY 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++ FS++NR+GI+R+LHRIS IRNR+ + GLTCRVGRAV G+ II DL+E G S
Sbjct: 66 VTKRISKFSNENRAGIERTLHRISCIRNRQFLINGLTCRVGRAVFGTISIIRDLLESGKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT+IREIAR+L D+ KRV+I+DTSNEI GD D+PHSGIGRARRMQV
Sbjct: 126 ILILGKPGVGKTTIIREIARVLGDEMEKRVIIIDTSNEIAGDSDIPHSGIGRARRMQVAK 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMP+ IIIDEIGTELE LAA TIA++GVQLVGT HG ++N++KNP
Sbjct: 186 TELQHQVMIEAVENHMPQVIIIDEIGTELEVLAARTIAEKGVQLVGTTHGNCLENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
L L+GGI+ VTL DEEAK+R QK+ILERK P F +E+ +T +H + +VD
Sbjct: 246 PLADLIGGIQYVTLSDEEAKRRGTQKSILERKAYPAFEIIIEINDQTSWTIHEDVKDSVD 305
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
+ L G + ++RQ+ L I+ + + + N+ + ES
Sbjct: 306 SFLRGSFLVGQIRQLS------LNEKVIINSRRFQSLQNSFNKTRPNLSESGPLVTKNWA 359
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
NQ +N +++ S + +Y Y + L +V ++ +E + +T++I AD ++
Sbjct: 360 FMNQKQNEI---TLKLSSKKLVIYPYSLSNNLLKEV--LLKMEFKFVLTNEIRKADLVIG 414
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILG 561
+KQN + +A+ +P++ + + Q+ K ++ + G
Sbjct: 415 LKKHLKQNFRLIQLAQQKNIPIYSLNEISFYQVSKLIQYLCG 456
>gi|428316917|ref|YP_007114799.1| single-stranded nucleic acid binding R3H domain-containing protein
[Oscillatoria nigro-viridis PCC 7112]
gi|428240597|gb|AFZ06383.1| single-stranded nucleic acid binding R3H domain-containing protein
[Oscillatoria nigro-viridis PCC 7112]
Length = 588
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/315 (60%), Positives = 242/315 (76%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L+++P +R+ L H + +LIE+VMDLGR+P ARFPS +S+ V DL +
Sbjct: 6 DLNRLLDIVPDEIRQPLEQHPQRNNLIEIVMDLGRQPEARFPSLAEPLSQTPVSKADLNY 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG F DNR+GI+++LHRISA+RNR ++IGLT RVGRAV G+ II DLVE G S
Sbjct: 66 CIERVGHFGGDNRAGIEQTLHRISALRNRSGEIIGLTLRVGRAVFGTIGIIRDLVETGQS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADDLEKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVSR 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG ++N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNRLENLMKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI++VTLGD+EA++R QKT+LERK PPTF AVEM+ R +H R+ ++D
Sbjct: 246 TLADLIGGIQAVTLGDDEARRRGSQKTVLERKSPPTFEIAVEMLERQRWVIHERVADSID 305
Query: 400 AILAGKLPLFEVRQM 414
+L G+ P ++R +
Sbjct: 306 TLLRGREPNQQIRSV 320
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 99/177 (55%), Gaps = 12/177 (6%)
Query: 479 PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQ 538
P+ VY Y I L QV + L + +T DI +AD +LA S ++ +R +AK Q
Sbjct: 423 PLHVYPYGIARHQLEQVISTLNLP--VLLTKDIESADVVLALRSNVRNQSKLRHLAKTRQ 480
Query: 539 LPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDAL 598
+P+ IK+ T+ + +A+R +L M+ GT +D+ + R + +E++AL
Sbjct: 481 VPLHTIKAGTIPHVARALRRLLDMDDPGT------PEVADLALF----ARSGSSDELEAL 530
Query: 599 EEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
EE RLA+E IVIP G+ VELLPR + Q ELVE Y L + + G E N RL+I P
Sbjct: 531 EETRLAVEQIVIPKGQPVELLPRSPNVRKMQHELVEHYHLKSHSFGEEPNRRLRIYP 587
>gi|116748317|ref|YP_845004.1| single-stranded nucleic acid binding R3H domain-containing protein
[Syntrophobacter fumaroxidans MPOB]
gi|116697381|gb|ABK16569.1| single-stranded nucleic acid binding R3H domain protein
[Syntrophobacter fumaroxidans MPOB]
Length = 515
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 237/554 (42%), Positives = 329/554 (59%), Gaps = 62/554 (11%)
Query: 107 LLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGD 166
++P +R ++ + + L+E+V+DLGR P AR+P +SE V E+L + +S+V
Sbjct: 18 VMPRNIRAKIEENPQYHSLLEIVLDLGRIPEARYPGSIEELSEHPVSLEELNYVVSRVAR 77
Query: 167 FSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPP 226
F DDNR+GI+R+LHRISA RNR VIGLTCRVGRAV G+ +I+ D+VE G S+L++G P
Sbjct: 78 FGDDNRAGIERTLHRISAFRNRSGSVIGLTCRVGRAVFGTVDIVRDVVESGHSLLLLGRP 137
Query: 227 GVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSV 286
GVGKTTL+RE AR+LADD KRV+IVDTSNEIGGDGD+PH GIGRARRMQVP QH V
Sbjct: 138 GVGKTTLLREAARVLADDFGKRVIIVDTSNEIGGDGDIPHPGIGRARRMQVPTPGNQHGV 197
Query: 287 MIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVG 346
MIEAVENHMPE I+IDEIGTE EALAA TIA+RGVQL+ T HG T++N+++NPSL LVG
Sbjct: 198 MIEAVENHMPEVIVIDEIGTEAEALAARTIAERGVQLIATVHGNTLENLLQNPSLSDLVG 257
Query: 347 GIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAG-- 404
G++SVTL DEEA++R QKT+LERK PPTF +E+ + VHH + + +D L G
Sbjct: 258 GLQSVTLSDEEARRRGTQKTVLERKLPPTFNVVIEIQEKDRLAVHHDVASVIDYSLRGFP 317
Query: 405 KLPLFEVRQMDA--EHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASN 462
P +R D E H+P + D++A +A++
Sbjct: 318 FSPEVRIRTGDGSVEVHKPQ------------------DRDEAAPAVEAAGPARGSWAAH 359
Query: 463 QFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA-SS 521
+ R ++++R V+ Y + L + + +G+ + V+ D AD IL S
Sbjct: 360 R---RGKRKNLR-------VFPYGVGRVRLERAIRNLGV--PVVVSADAEKADVILILKS 407
Query: 522 SEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEI 581
E +Q+ +R + + +P +I+SNT Q+ +R I ++ G +
Sbjct: 408 QEKRQSKRLREI-EARGVPFHLIRSNTATQIENFLRSIFSLQETGPV------------- 453
Query: 582 EDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAE 641
EEI AL+E +A+ V+ +AVEL PR S I Q L + + L E
Sbjct: 454 -----------EEI-ALQEAEVAM-IKVLDEQKAVELAPRNSGIRRLQHLLADQHGLRTE 500
Query: 642 NSGTELNPRLQILP 655
+ G E R+ I P
Sbjct: 501 SKGREPYRRVVIHP 514
>gi|334116745|ref|ZP_08490837.1| single-stranded nucleic acid binding R3H domain-containing protein
[Microcoleus vaginatus FGP-2]
gi|333461565|gb|EGK90170.1| single-stranded nucleic acid binding R3H domain-containing protein
[Microcoleus vaginatus FGP-2]
Length = 588
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/315 (59%), Positives = 240/315 (76%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L+++P +R+ L H + +LIE+VMDLGR+P ARFPS +S+ V L +
Sbjct: 6 DLNRLLDIVPDEIRQPLEQHPQRNNLIEIVMDLGRRPEARFPSLAEPLSQTPVSKAHLNY 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
I +VG F DNR+GI+++LHRISA+RNR ++IGLT RVGRAV G+ II DLVE G S
Sbjct: 66 CIQRVGHFGGDNRAGIEQTLHRISALRNRSGEIIGLTLRVGRAVFGTIGIIRDLVETGQS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LADD KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADDLEKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVSR 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMP+ I+IDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PELQHQVMIEAVENHMPQVIVIDEIGTELEALAARTIAERGVQLVGTAHGNRIENLMKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI++VTLGD+EA++R QKT+LERK PPTF A+EM+ R +H R+ +D
Sbjct: 246 TLADLIGGIQAVTLGDDEARRRGSQKTVLERKAPPTFEIAIEMLERERWVIHERVADAID 305
Query: 400 AILAGKLPLFEVRQM 414
+L G+ P ++R +
Sbjct: 306 TLLRGREPHQQIRSV 320
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 99/177 (55%), Gaps = 12/177 (6%)
Query: 479 PVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQ 538
P+ VY Y I L QV + L + +T DI +AD +LA S ++ +R +AK Q
Sbjct: 423 PLHVYPYGIPRHQLEQVISTLNLP--VLLTKDIESADVVLALRSNVRNQSKLRHLAKTRQ 480
Query: 539 LPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDAL 598
+P+ IK+ T+ + +A+R +L M+ GT +D+ + R + +EI+AL
Sbjct: 481 VPLHTIKAGTIPHVARALRRLLDMDDPGT------PEVADLALF----ARSGSSDEIEAL 530
Query: 599 EEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
EE RLA+E IVIP G+ VELLPR + Q ELVE Y L + + G E N RL+I P
Sbjct: 531 EETRLAVEQIVIPKGQPVELLPRSPNVRKMQHELVEHYHLKSHSFGEEPNRRLRIYP 587
>gi|188584674|ref|YP_001916219.1| ATPase AAA [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179349361|gb|ACB83631.1| AAA ATPase [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 445
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 209/467 (44%), Positives = 296/467 (63%), Gaps = 39/467 (8%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
EL+L LE+ P +R L +L DL+EVV+DLGRKP AR+P +++ V +DL+
Sbjct: 7 ELKLMLEIFPPHIRENLQKRNDLEDLVEVVLDLGRKPEARYPREFIYLTDDTVTEKDLEF 66
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++ G F DNRSGI+++LHRISAIRNR+ +++GLTCRVG+AV G+A+II D+VE G
Sbjct: 67 IYNRTGPFGLDNRSGIEKTLHRISAIRNRRDKIVGLTCRVGKAVYGTADIIRDIVERGDK 126
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
L++G PGVGKTT++RE AR+LAD+ KRV+IVDTSNEI GDGD+PH IG ARRMQV
Sbjct: 127 TLLLGRPGVGKTTILREAARILADEFRKRVIIVDTSNEIAGDGDIPHPAIGHARRMQVKT 186
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+ QH VMIEAVENHMPE IIIDEIGT EA AA TIA+RGVQL+ TAHG T++N++ NP
Sbjct: 187 PDKQHDVMIEAVENHMPEVIIIDEIGTYQEAEAARTIAERGVQLIATAHGNTLENLILNP 246
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI++VTLGDEEAK+R QKT+LERK P TF VE+ R ++H L+ VD
Sbjct: 247 TLSELIGGIDTVTLGDEEAKRRNSQKTVLERKAPSTFDAVVEIFDRNTLKIHAPLEKVVD 306
Query: 400 AILAGKLPLFEVR-QMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDED 458
IL G P E+R + + HE ++ + I +DE +E +
Sbjct: 307 YILRGGAPRPEIRLRKNDGQHEIIQNSNI----------------------TDEWNEMDA 344
Query: 459 YASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAIL 518
++N ++++ +Y Y + + L ++ K + + ++ T + AD +L
Sbjct: 345 QTEGNYQNDALQK----------IYPYAVSKDTLKRLIKELQVPAKL--TKHMQEADIML 392
Query: 519 ASSSEMKQNPWIRGVAKFHQ--LPVFVIKSNTMAQMVKAVRMILGME 563
++ ++ + + K +Q +PV VI+ N Q+ K +R I E
Sbjct: 393 TVKAQKRKGA--KKIQKAYQENIPVHVIRKNKEKQVEKVLRHIFKKE 437
>gi|302811106|ref|XP_002987243.1| hypothetical protein SELMODRAFT_125482 [Selaginella moellendorffii]
gi|300145140|gb|EFJ11819.1| hypothetical protein SELMODRAFT_125482 [Selaginella moellendorffii]
Length = 403
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/318 (60%), Positives = 246/318 (77%), Gaps = 5/318 (1%)
Query: 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF---PSGDWVISEQIVKHEDL 157
L L L++LP +R+ L H + GDL+EVV+DLGR+P ARF G+++ +I + +DL
Sbjct: 7 LLLCLQILPEGIRQNLLKHPKRGDLLEVVLDLGRRPEARFLKHRGGEYLRDNEITR-DDL 65
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+ A + VG+F DNR+GI+ +LHRISAIRNRK +IGLTCRVGRAV G +++ DL++ G
Sbjct: 66 QAAEAAVGEFGSDNRAGIEGTLHRISAIRNRKGVIIGLTCRVGRAVTGHVDMVRDLLDCG 125
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
SIL +G PGVGKTT+IREIAR+LADD KRVV+VDTSNEIGGDGDVPH IG ARRMQV
Sbjct: 126 KSILFLGRPGVGKTTVIREIARVLADDLRKRVVVVDTSNEIGGDGDVPHPAIGGARRMQV 185
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
P+ +MQH VM+EAVENHMP+ +I+DEIGTE EALA TIA+RGV LV TAHG T++NI+K
Sbjct: 186 PDPSMQHRVMVEAVENHMPQVVIVDEIGTEAEALACRTIAERGVMLVATAHGQTLENIIK 245
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NP+L LVGGI++VTLGD+EA+ R QKT+LERK PPTF+ +EM R+ + H+ D +
Sbjct: 246 NPTLSDLVGGIQTVTLGDDEARARGTQKTVLERKAPPTFSILIEMRERSHW-IAHQSDKS 304
Query: 398 VDAILAGKLPLFEVRQMD 415
VD +L GK P+ E+R D
Sbjct: 305 VDNLLQGKQPVVEMRTRD 322
>gi|378824540|ref|YP_005089710.1| ycf45 gene product (chloroplast) [Synedra acus]
gi|371572739|gb|AEX37835.1| hypothetical protein (chloroplast) [Synedra acus]
Length = 448
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/455 (42%), Positives = 284/455 (62%), Gaps = 17/455 (3%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+LE E LP + L H LIE+V+DLGR+P ARFP+G +S++++ +DL +
Sbjct: 4 DLEKLFEKLPFFLYDHLVKHMYADQLIEIVLDLGRRPEARFPTGPEYLSQKVISWQDLDY 63
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++ FS +NR+GI+R+LHRIS IRNR+ + GLTCRVGR++ G+ +I DL+E G S
Sbjct: 64 TTKRISKFSTENRAGIERTLHRISCIRNRQFLITGLTCRVGRSIFGAISVIRDLLESGQS 123
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT+IREI R+LAD+ KRVV++DTSNEI G+ D+PHSGIGRARRMQV
Sbjct: 124 ILILGKPGVGKTTIIREIGRVLADEMEKRVVVIDTSNEIAGESDIPHSGIGRARRMQVAK 183
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENHMP+ IIIDEIGTELE LAA TIA++GVQLVGT HG + N++KNP
Sbjct: 184 TELQHQVMIEAVENHMPQVIIIDEIGTELEVLAARTIAEKGVQLVGTTHGNCLQNLIKNP 243
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
L L+GGI+ VTL D+EAK+RK QKT+LERK P F +E+ + +H + ++D
Sbjct: 244 PLADLIGGIQYVTLSDDEAKRRKTQKTVLERKAYPAFEILIEINQQNSWTIHEDVKTSID 303
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
+L G + ++R P K+ + P+ L+ N+ +
Sbjct: 304 LLLRGDSFMEQIRFFSL----PEKIKIFSERTQPQYGSLSNNQTFFPNLTWS-------- 351
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
+ N K+ + S++ + + +Y Y I L +V MG+ +T+++ A IL
Sbjct: 352 SVNTLKHEN---SLKLKTKLLIIYPYSISNNLLKEVLLRMGI--NFILTNEVKKASIILG 406
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVK 554
+ +N + +A + +P++ S + Q+V+
Sbjct: 407 LKKHLNKNISLTQIATKYNIPIYSFNSISYYQLVR 441
>gi|302789283|ref|XP_002976410.1| hypothetical protein SELMODRAFT_104906 [Selaginella moellendorffii]
gi|300156040|gb|EFJ22670.1| hypothetical protein SELMODRAFT_104906 [Selaginella moellendorffii]
Length = 403
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/318 (60%), Positives = 246/318 (77%), Gaps = 5/318 (1%)
Query: 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF---PSGDWVISEQIVKHEDL 157
L L L++LP +R+ L H + GDL+EVV+DLGR+P ARF G+++ +I + +DL
Sbjct: 7 LLLCLQILPEGIRQNLLKHPKRGDLLEVVLDLGRRPEARFLKHRGGEYLRDNEITR-DDL 65
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+ A + VG+F DNR+GI+ +LHRISAIRNRK +IGLTCRVGRAV G +++ DL++ G
Sbjct: 66 QAAEAAVGEFGSDNRAGIEGTLHRISAIRNRKGVIIGLTCRVGRAVTGHVDMVRDLLDCG 125
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
SIL +G PGVGKTT+IREIAR+LADD KRVV+VDTSNEIGGDGDVPH IG ARRMQV
Sbjct: 126 KSILFLGRPGVGKTTVIREIARVLADDLRKRVVVVDTSNEIGGDGDVPHPAIGGARRMQV 185
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
P+ +MQH VM+EAVENHMP+ +I+DEIGTE EALA TIA+RGV LV TAHG T++NI+K
Sbjct: 186 PDPSMQHRVMVEAVENHMPQVVIVDEIGTEAEALACRTIAERGVMLVATAHGQTLENIIK 245
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NP+L LVGGI++VTLGD+EA+ R QKT+LERK PPTF+ +EM R+ + H+ D +
Sbjct: 246 NPTLSDLVGGIQTVTLGDDEARARGTQKTVLERKAPPTFSILIEMRERSHW-IAHQSDKS 304
Query: 398 VDAILAGKLPLFEVRQMD 415
VD +L GK P+ E+R D
Sbjct: 305 VDNLLQGKQPVVEMRTRD 322
>gi|298246463|ref|ZP_06970269.1| single-stranded nucleic acid binding R3H domain protein
[Ktedonobacter racemifer DSM 44963]
gi|297553944|gb|EFH87809.1| single-stranded nucleic acid binding R3H domain protein
[Ktedonobacter racemifer DSM 44963]
Length = 607
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/316 (59%), Positives = 237/316 (75%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+LE L LP + + +L+E+VMDLGR RFP G+ ++S Q V + DL++
Sbjct: 8 DLEALLATLPPSIHDAVNRLENRSELLEIVMDLGRLAEGRFPEGEVLLSNQPVTYADLEY 67
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+ ++G+F DDNR+GI+R+LHRISA+RNRK +V+GLTCR+GRAV GS +I D+VE G S
Sbjct: 68 VVERIGEFGDDNRAGIERTLHRISALRNRKGKVVGLTCRIGRAVLGSIALIRDIVEQGQS 127
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTTL+REIAR+LAD+ KRVV+VDTSNEI GDGD+PH GIGRARRMQV
Sbjct: 128 ILILGRPGVGKTTLLREIARVLADEANKRVVVVDTSNEIAGDGDIPHPGIGRARRMQVAR 187
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH+VMIEAVENHMP+ I+IDEIGTELEA AA TIA+RGVQLV TAHG T+ N++ NP
Sbjct: 188 TVEQHAVMIEAVENHMPQVIVIDEIGTELEAAAARTIAERGVQLVATAHGNTLGNLLMNP 247
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGDEEA++R QK+ILERK PPTF VE S E VH + TVD
Sbjct: 248 TLSDLVGGIQTVTLGDEEARRRHTQKSILERKAPPTFDVVVEQQSWEEVIVHRDVADTVD 307
Query: 400 AILAGKLPLFEVRQMD 415
+L G + + E R D
Sbjct: 308 TMLRGMIIVAEERTRD 323
>gi|428302124|ref|YP_007140430.1| single-stranded nucleic acid binding R3H domain-containing protein
[Calothrix sp. PCC 6303]
gi|428238668|gb|AFZ04458.1| single-stranded nucleic acid binding R3H domain-containing protein
[Calothrix sp. PCC 6303]
Length = 588
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/316 (60%), Positives = 239/316 (75%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L++LP +R+ L H + L+EVV+DLGR+P ARFP +SEQ + + +
Sbjct: 6 DLQKLLDVLPQDLRQALENHPQRDSLVEVVLDLGRRPEARFPGSAEYLSEQPITQQQIDE 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+S+VG F DNR+GI+++LHRISAIRNR ++IGLTCRVGRA+ G+ +I DLVE G S
Sbjct: 66 CVSRVGIFGGDNRAGIEQTLHRISAIRNRTGKIIGLTCRVGRAIFGTIGMIRDLVETGKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+LAD+ KRVVI+DTSNEI GDGDVPH IG+ARRMQV
Sbjct: 126 ILMLGRPGVGKTTALREIARVLADELNKRVVIIDTSNEIAGDGDVPHPAIGKARRMQVSR 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH VMIEAVENHMPE I+IDEIGTELEALAA TIA+RGVQLVGTAHG I+N++KNP
Sbjct: 186 PEEQHQVMIEAVENHMPEVIVIDEIGTELEALAARTIAERGVQLVGTAHGNQIENLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI++VTLGD+EA++R QKT+LERK PTF AVEM R VH + TVD
Sbjct: 246 TLSDLVGGIQAVTLGDDEARRRGSQKTVLERKALPTFEIAVEMHERQRWVVHESVADTVD 305
Query: 400 AILAGKLPLFEVRQMD 415
+L G+ P + R +D
Sbjct: 306 MLLRGRQPSPQTRTVD 321
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 116/207 (56%), Gaps = 24/207 (11%)
Query: 456 DEDYASNQFKNRSIKRSVRKPSP-----PVCVYTYRILEADLLQVAKVMGLEDEIDVTDD 510
DE + + F+ ++ + R+ P P+ VY Y + + L QV V+ L I +T +
Sbjct: 398 DESWGLDDFE---LELNPRQAGPNGEDLPLHVYPYGVSRSQLEQVISVLNLP--IALTKE 452
Query: 511 IGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMES--FGTI 568
+ AD+ILA S +K + +R +AK LP+ +IKS+T+ Q+ + +R +L M+ FG
Sbjct: 453 LDNADSILALRSHVKNHAKLRQLAKSRHLPLHMIKSSTIPQITRGLRRMLNMDDPEFGD- 511
Query: 569 SKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVAR 628
E E T +E+DALEE RLA+E IVIP G+ VELLPR +++
Sbjct: 512 -----------ERELQLMLHNGTDDEVDALEEARLAVEQIVIPKGQPVELLPRSAQVRKM 560
Query: 629 QLELVESYQLAAENSGTELNPRLQILP 655
Q ELVE Y+L +++ G E N RL+I P
Sbjct: 561 QHELVEHYRLKSDSFGEEPNRRLRIYP 587
>gi|315320527|ref|YP_004072583.1| putative Ycf45 [Thalassiosira oceanica CCMP1005]
gi|283569000|gb|ADB27537.1| putative Ycf45 [Thalassiosira oceanica CCMP1005]
Length = 452
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/467 (41%), Positives = 300/467 (64%), Gaps = 23/467 (4%)
Query: 98 DIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDL 157
D +LE L+ LP + + + H LIE+V+DLGR+P ARF +G +S++++ +D+
Sbjct: 4 DDDLEKLLKNLPFFIYQHVHNHSNKEKLIEIVLDLGRRPEARFTTGPEYLSQKVISWQDI 63
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+ ++ FS +NR+GI+R+LHRIS IRNR+ + GLTCRVGRA+ G+ II DL+E
Sbjct: 64 DYTTRRISKFSGENRAGIERTLHRISCIRNRQFLINGLTCRVGRAIFGTISIIRDLLESR 123
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
SIL++G PGVGKTT+IREIAR+L+D+ KRV+I+DTSNEI GD DVPH+GIGRARRMQV
Sbjct: 124 KSILILGKPGVGKTTIIREIARILSDEMEKRVIIIDTSNEIAGDSDVPHNGIGRARRMQV 183
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
+QH +M+EA+ENHMP+ I+IDEIGTELEALAA TIA++GVQLVGT HG ++N++K
Sbjct: 184 AKTELQHKIMLEAIENHMPQVIVIDEIGTELEALAARTIAEKGVQLVGTTHGNCLENLIK 243
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NPSL LVGGI+ VT+ DEEAK+R QK+ILERK P F AVE+ + +H ++ +
Sbjct: 244 NPSLSDLVGGIQYVTISDEEAKRRGTQKSILERKSYPAFQLAVEVNNVYSWTIHENVENS 303
Query: 398 VDAILAGKLPLFEVRQMDAEHHEPLKVT-PILRGSYPEESELTINEDKSAEMESDEDSED 456
VD IL + + R + + +E L +T L+ + ++ +N EM + +
Sbjct: 304 VDLILRDNFTILQTRSI--KKNEKLSITYKKLQKDFLTKNSWFLNR----EMIAIHRNWF 357
Query: 457 EDY---ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGT 513
E Y FKN ++ +Y Y + + + ++ +G +++ +T I
Sbjct: 358 EMYKPKTLGSFKNTTL-----------VIYPYSLSKNLIREILVKLG--NKVVITRKIKQ 404
Query: 514 ADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMIL 560
A+ I+ ++QN ++ +A ++P++ I ++ Q+++ ++ +
Sbjct: 405 ANLIIGLKKHLRQNFRLKNLAHQRKIPIYTINQRSIYQIMRLLQFFI 451
>gi|302848609|ref|XP_002955836.1| hypothetical protein VOLCADRAFT_66371 [Volvox carteri f.
nagariensis]
gi|300258804|gb|EFJ43037.1| hypothetical protein VOLCADRAFT_66371 [Volvox carteri f.
nagariensis]
Length = 363
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 200/325 (61%), Positives = 241/325 (74%), Gaps = 3/325 (0%)
Query: 83 VSDSPNSASTSRSGA---DIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLAR 139
VS + A SGA D EL+L L LLP +R L H ++ L+EVVMDLGR P AR
Sbjct: 27 VSKDDSHALKRSSGAAHIDAELQLLLRLLPPTVRAVLENHPDVETLVEVVMDLGRPPSAR 86
Query: 140 FPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRV 199
FP GD ++S++ + EDL+ A+ +VG F DNRSGID +LHRIS IRNR +V+GLTCRV
Sbjct: 87 FPGGDVLLSDRAMTAEDLEQAVKQVGRFDGDNRSGIDSTLHRISCIRNRAGRVVGLTCRV 146
Query: 200 GRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIG 259
GRAV G+AE++ DLV G SIL++G PGVGKTT +RE+ R+ AD+ +RVV+VDTSNEIG
Sbjct: 147 GRAVPGAAELVRDLVLAGRSILLLGRPGVGKTTALREVCRIAADESRRRVVVVDTSNEIG 206
Query: 260 GDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
GDGDVPH IG ARRMQVP QH VM+EAVENHMP+ I+IDEI T E AA TIAQR
Sbjct: 207 GDGDVPHPSIGSARRMQVPRPEAQHDVMVEAVENHMPQVIVIDEISTLAECTAARTIAQR 266
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCA 379
GVQLVGTAHG ++N++KNPSL LVGGI+SVTLGDEEA++R VQK+ILER PPTF A
Sbjct: 267 GVQLVGTAHGGRLENVIKNPSLADLVGGIQSVTLGDEEARRRGVQKSILERAAPPTFDVA 326
Query: 380 VEMISRTECRVHHRLDATVDAILAG 404
VE+ R RVH + VDAILAG
Sbjct: 327 VELEERGRWRVHLDVGGAVDAILAG 351
>gi|299830572|ref|YP_003735020.1| hypothetical protein PyulOm_p071 [Durinskia baltica]
gi|297384936|gb|ADI40235.1| hypothetical protein [Durinskia baltica]
Length = 455
Score = 369 bits (948), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 201/469 (42%), Positives = 288/469 (61%), Gaps = 25/469 (5%)
Query: 96 GADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHE 155
D +LE L+ LP +++ L H +LIE+V+DLGR+P ARF G +S++I+ +
Sbjct: 2 NTDNDLEKLLQNLPFFIQQYLHQHPYKNELIEIVLDLGRRPEARFSHGPEYLSQKIISWQ 61
Query: 156 DLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVE 215
DL + ++ FS +NR+GI+R+LHRIS IRNR+ + GLTCRVGRAV G+ +I DL+E
Sbjct: 62 DLDYITQRISKFSSENRAGIERTLHRISCIRNRQFLINGLTCRVGRAVFGTISVIRDLLE 121
Query: 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRM 275
SIL++G PGVGKTT+IREI R+LAD+ KRV+I+DTSNEI GD D+PH GIGRARRM
Sbjct: 122 SDKSILILGRPGVGKTTIIREIGRVLADEMEKRVIIIDTSNEIAGDSDIPHFGIGRARRM 181
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
QV QH VMIEAVENHMP+ IIIDEIGT+LE LAA TIA++GV+LVGT HG ++N+
Sbjct: 182 QVSQTEFQHQVMIEAVENHMPQVIIIDEIGTDLEVLAARTIAEKGVKLVGTTHGNCLENL 241
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLD 395
+KNPSL L+GGI+ VTL DEEAK+R QK+ILERK PTF +E+ + +H +
Sbjct: 242 IKNPSLAELIGGIKYVTLSDEEAKRRGTQKSILERKAYPTFELVIEINNSNSWTIHEDVA 301
Query: 396 ATVDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSE 455
+VD L ++RQ+ P KV + YP + L M+S ++S
Sbjct: 302 HSVDLFLRNNSGKEQIRQILL----PEKVQIKCQNYYPYSTFL---------MKSIKNSN 348
Query: 456 DEDYAS-------NQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVT 508
S N+F + K S + S + +Y+Y I + + + + +T
Sbjct: 349 QNLIPSERIWPEINEFNS---KYSAQLSSKNLIIYSYSISNNFIKEAMSKVNI--RFTLT 403
Query: 509 DDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVR 557
DI A I+ + N ++ +A+ +P++ + ++ Q +K ++
Sbjct: 404 TDIKKASLIIGLKKHLINNLRLKKLAQQKNIPIYSLNQLSIYQFMKLIQ 452
>gi|11467491|ref|NP_043637.1| ORF455 [Odontella sinensis]
gi|1351772|sp|P49540.1|YCF45_ODOSI RecName: Full=Uncharacterized protein ycf45; AltName: Full=ORF455
gi|1185186|emb|CAA91669.1| ORF455, homologous to Porphyra ORF565 [Odontella sinensis]
Length = 455
Score = 369 bits (946), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 189/467 (40%), Positives = 301/467 (64%), Gaps = 21/467 (4%)
Query: 98 DIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDL 157
D +L+ ++ LP +R+ + H LIE+V+DLGR+P ARF +G +S++++ +D+
Sbjct: 4 DEDLDNLIKNLPFLIRQNINQHPSKQKLIEIVIDLGRRPEARFTTGPEYLSQKVISWQDI 63
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
H ++ FS+DNR+GI+R+LHRIS IRNR+ + GLTCR+GRA+ G+ + DL+E
Sbjct: 64 NHFTKRISKFSNDNRAGIERTLHRISCIRNRQFLINGLTCRIGRAIFGTISSVRDLLESQ 123
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
SIL++G PGVGKTT+IREIAR+L+D+ KRVVIVDTSNEI GD D+PHS IGRARRMQV
Sbjct: 124 QSILLLGKPGVGKTTIIREIARVLSDEMEKRVVIVDTSNEIAGDSDIPHSAIGRARRMQV 183
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
++QH +MIEAVENHMP+ I+IDEIGTELEALAA TIA++GVQLVGT HG ++N++K
Sbjct: 184 ATTDLQHQIMIEAVENHMPQVIVIDEIGTELEALAARTIAEKGVQLVGTTHGNCLENLIK 243
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NP L L+GGI+SVTL D+EAK+R QK+I+ERK P F A+E+ + +H + ++
Sbjct: 244 NPPLSDLIGGIQSVTLSDDEAKRRGTQKSIIERKAYPAFQIAIEINTENSWTIHEDIKSS 303
Query: 398 VDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDE 457
+D +L +VR++ + +K + ++ + + S ++++ S +
Sbjct: 304 IDLLLRKSFTGTQVRELFLDKRTFIKYKKLQIDTFT-----LLKDSNSLKIQTINRSNNW 358
Query: 458 DYASNQ----FKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMG-LEDEIDVTDDIG 512
S + F+N K+ + +Y+ L ++L +++++ L+ + +T ++
Sbjct: 359 FTRSQKSLFYFQNSKAKKCF------IFIYS---LPSNL--ISEILNKLKFQYVLTKELQ 407
Query: 513 TADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMI 559
+ I+ S + QN ++ +A+ +PV+ + + Q++ V++
Sbjct: 408 KSSLIVGSKVSLNQNFKLKKLAQQCSIPVYSVNKENIYQIISLVKLF 454
>gi|299830371|ref|YP_003734586.1| hypothetical protein KrfoC_p076 [Kryptoperidinium foliaceum]
gi|297385073|gb|ADI40371.1| conserved hypothetical protein [Kryptoperidinium foliaceum]
Length = 455
Score = 368 bits (945), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 195/458 (42%), Positives = 289/458 (63%), Gaps = 11/458 (2%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+LE +E LPS ++ L H +LIE+V+DLGR+P ARF G +S++I+ +DL +
Sbjct: 6 DLEKLIENLPSFIQDYLHQHGYQNELIEIVLDLGRRPEARFTYGPEYLSQKIISWQDLDY 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++ FS++NR+GI+R+LHRIS IRNR+ + GLTCR+GRA+ G+ +I DL+E S
Sbjct: 66 MTQRISKFSNENRAGIERTLHRISCIRNRQFLINGLTCRIGRAIFGTVSVIRDLLESEKS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT+IREIAR+L+D+ +RV+I+DTSNEI GD D+PH GIGRARRMQV
Sbjct: 126 ILILGRPGVGKTTIIREIARVLSDEMEQRVIIIDTSNEIAGDSDIPHFGIGRARRMQVSK 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH VMIEAVENHMP+ IIIDEIGT+LE LAA TIA++GV+L+GT HG ++N+VKNP
Sbjct: 186 TEFQHQVMIEAVENHMPQVIIIDEIGTDLEVLAARTIAEKGVKLIGTTHGNCLENLVKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
SL L+GGI+ VTL DEEAK+R QK+ILERK PTF +E+ + +H + +++D
Sbjct: 246 SLAELIGGIQYVTLSDEEAKRRGTQKSILERKSYPTFEHVIEINALKSWIIHENVSSSID 305
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
+L ++RQ+ P KV Y I+ S S E
Sbjct: 306 LLLRNLYETEQLRQISL----PEKVAI----KYQTTDAYIISSRNSLRPSVKRLSSLEPL 357
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
S+ K++ I+ + + + +Y Y + + + K + + +T+DI A I+
Sbjct: 358 WSDINKSK-IQERLHVTAKVLIIYPYSLSHNFIKEAMKKVNI--RFILTNDIKKASLIIG 414
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVR 557
+K N ++ +A+ Q+P++ + ++ Q +K ++
Sbjct: 415 LKKHLKHNLKLKQLAQQKQIPIYSLNQLSIYQFLKLIQ 452
>gi|297846316|ref|XP_002891039.1| hypothetical protein ARALYDRAFT_473506 [Arabidopsis lyrata subsp.
lyrata]
gi|297336881|gb|EFH67298.1| hypothetical protein ARALYDRAFT_473506 [Arabidopsis lyrata subsp.
lyrata]
Length = 379
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 185/324 (57%), Positives = 242/324 (74%), Gaps = 5/324 (1%)
Query: 98 DIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF---PSGDWVISEQIVKH 154
D L FLE+LP +R L L+EV+MDLGR P AR+ P G ++ + + V
Sbjct: 43 DDNLAAFLEILPKDLRHRLLNDSRRNQLVEVIMDLGRPPEARYLGEPGGQYLRNNE-VSM 101
Query: 155 EDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLV 214
E+L+ A VG+F DNR+GI+ +LHRISAIRNRK ++GLTCRVGRAV+G +++ DL+
Sbjct: 102 EELEDAQELVGEFGADNRAGIEGTLHRISAIRNRKGFIVGLTCRVGRAVSGHIDMLYDLL 161
Query: 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARR 274
G SIL +G PGVGKTT++REIAR+L+D+ KRVVI+DTSNEIGGDGD+PHS IG +RR
Sbjct: 162 HYGKSILFVGRPGVGKTTVLREIARVLSDEFQKRVVIIDTSNEIGGDGDIPHSAIGGSRR 221
Query: 275 MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDN 334
MQVP ++QH VMIEAVENHMP+ II+DEIGTE EALA +IA+RGV L+GTAHG + N
Sbjct: 222 MQVPKPSLQHKVMIEAVENHMPQVIIVDEIGTEAEALACRSIAERGVMLIGTAHGEQLQN 281
Query: 335 IVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRL 394
I+KNP+L L+GGIE+VTLGDEEA+ R+ QK+ILERK PPTF +EM R + + H+
Sbjct: 282 IIKNPTLSDLIGGIETVTLGDEEARARRTQKSILERKAPPTFYFLIEMRER-DYWIAHQT 340
Query: 395 DATVDAILAGKLPLFEVRQMDAEH 418
+ +VD +L G+ P+ EVR+ D E+
Sbjct: 341 EKSVDMLLRGRNPMVEVRRRDEEY 364
>gi|302832762|ref|XP_002947945.1| hypothetical protein VOLCADRAFT_57504 [Volvox carteri f.
nagariensis]
gi|300266747|gb|EFJ50933.1| hypothetical protein VOLCADRAFT_57504 [Volvox carteri f.
nagariensis]
Length = 366
Score = 366 bits (939), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 185/320 (57%), Positives = 241/320 (75%), Gaps = 5/320 (1%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF---PSGDWVISEQIVKHEDLKHAI 161
L+LLP +R L H + L+EVV+DLGR+P ARF P+G++ + +Q V DL+ A+
Sbjct: 18 LQLLPEDIREPLVNHPQRASLVEVVLDLGRQPEARFEGIPAGEY-LRKQEVTTADLEAAV 76
Query: 162 SKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSIL 221
+ VG+F DNR+G+ +LHRISAIRNR+ +IGLTCRVGRAV+G ++ DLVE G S+L
Sbjct: 77 AAVGEFGADNRAGVPGTLHRISAIRNRRGIIIGLTCRVGRAVSGHIAMLKDLVESGHSVL 136
Query: 222 VIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVN 281
++G PGVGKTT+IREI R LAD++ KRVVIVDTSNEIGGDGDVPH IG ARRMQV +
Sbjct: 137 LLGRPGVGKTTVIREICRTLADEYRKRVVIVDTSNEIGGDGDVPHPAIGGARRMQVADAT 196
Query: 282 MQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSL 341
QH VMIEAVENHMP+ +++DEIGTE EALA TIA+RGVQL+GTAHG ++N++KNP+L
Sbjct: 197 QQHGVMIEAVENHMPQVVVVDEIGTEAEALACRTIAERGVQLIGTAHGCLLENLIKNPTL 256
Query: 342 QILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAI 401
LVGG+ +VTLGDEEA+ R QKTILERK PPTF VE+ +R V H ++ +VD +
Sbjct: 257 ADLVGGVAAVTLGDEEARTRGTQKTILERKAPPTFPIVVEIRARN-FYVAHWVEDSVDQL 315
Query: 402 LAGKLPLFEVRQMDAEHHEP 421
L G++P+ +VR+ + P
Sbjct: 316 LLGRMPVVQVRRACVARYLP 335
>gi|15217492|ref|NP_174599.1| putative stage III sporulation protein AA [Arabidopsis thaliana]
gi|12322578|gb|AAG51292.1|AC027035_15 unknown protein [Arabidopsis thaliana]
gi|48596989|gb|AAT46035.1| At1g33290 [Arabidopsis thaliana]
gi|50198961|gb|AAT70483.1| At1g33290 [Arabidopsis thaliana]
gi|332193460|gb|AEE31581.1| putative stage III sporulation protein AA [Arabidopsis thaliana]
Length = 379
Score = 365 bits (937), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 188/335 (56%), Positives = 247/335 (73%), Gaps = 8/335 (2%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF---PSG 143
P+S+S D L FLE+LP +R L L+EV+MDLGR P AR+ P G
Sbjct: 35 PDSSSMI---VDDNLGAFLEILPKDLRHRLLNDSRRNQLVEVIMDLGRPPEARYLGEPGG 91
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
++ + + V E+L+ A VG+F DNR+GI+ +LHRISAIRNRK ++GLTCRVGRAV
Sbjct: 92 QYLRNNE-VSMEELEDAQELVGEFGADNRAGIEGTLHRISAIRNRKGFIVGLTCRVGRAV 150
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGD 263
+G +++ DL+ G SIL +G PGVGKTT++REIAR+L+D+ KRVVI+DTSNEIGGDGD
Sbjct: 151 SGHIDMLYDLLHYGKSILFVGRPGVGKTTVLREIARVLSDEFQKRVVIIDTSNEIGGDGD 210
Query: 264 VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQL 323
+PHS IG +RRMQVP ++QH VMIEAVENHMP+ II+DEIGTE EALA +IA+RGV L
Sbjct: 211 IPHSAIGGSRRMQVPKPSLQHKVMIEAVENHMPQVIIVDEIGTEAEALACRSIAERGVML 270
Query: 324 VGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMI 383
+GTAHG + NI+KNP+L L+GGIE+VTLGDEEA+ R+ QK+ILERK PPTF +EM
Sbjct: 271 IGTAHGEQLQNIIKNPTLSDLIGGIETVTLGDEEARARRSQKSILERKAPPTFYFLIEMR 330
Query: 384 SRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEH 418
R + + H+ + +VD +L G+ P+ EVR+ D E+
Sbjct: 331 ER-DYWIAHQTEKSVDMLLRGRNPMVEVRRRDEEY 364
>gi|374853797|dbj|BAL56696.1| single-stranded nucleic acid binding R3H [uncultured gamma
proteobacterium]
Length = 501
Score = 365 bits (936), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 184/308 (59%), Positives = 235/308 (76%), Gaps = 5/308 (1%)
Query: 100 ELELFLELLPSRMRRELCMHREL--GDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDL 157
+LEL L+ LP +R L EL DL+E+V+DLGR P AR+ +++E V DL
Sbjct: 9 DLELLLQTLPGSLRDRLA---ELPNEDLLEIVLDLGRPPQARYADRSLLLAETPVTRADL 65
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+ + VG+F DNR+GI+ +LHRISAIRNRK +++GLT RVGRAV G+ ++I DL+E G
Sbjct: 66 NYVVDWVGEFGADNRAGIEGTLHRISAIRNRKGEIVGLTLRVGRAVTGTIDLIRDLIESG 125
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
S+L++G PGVGKTT +RE+AR+LADD KRV+++DTSNEIGGDGDVPH IG ARRMQV
Sbjct: 126 RSLLLLGRPGVGKTTKLREVARVLADDFGKRVIVIDTSNEIGGDGDVPHPAIGSARRMQV 185
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
P+ + QH+VMIEAVENHMPE I+IDEIGT EALAA TIA+RGVQL+GTAHG T+ N+V+
Sbjct: 186 PHPDKQHAVMIEAVENHMPEVIVIDEIGTAAEALAARTIAERGVQLIGTAHGNTLANLVQ 245
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NP+L LVGG+++VTLGDEEA+ R QKT+ ERK PPTF VE++SR E VH A
Sbjct: 246 NPTLCDLVGGVQTVTLGDEEARFRGTQKTVSERKAPPTFEQVVELVSRDELIVHLDTAAA 305
Query: 398 VDAILAGK 405
VDA+L G+
Sbjct: 306 VDALLRGE 313
>gi|255072155|ref|XP_002499752.1| predicted protein [Micromonas sp. RCC299]
gi|226515014|gb|ACO61010.1| predicted protein [Micromonas sp. RCC299]
Length = 440
Score = 364 bits (934), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 182/312 (58%), Positives = 237/312 (75%), Gaps = 5/312 (1%)
Query: 107 LLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDW---VISEQIVKHEDLKHAISK 163
+LP +R L HR L+EVV+DLGR+P ARF +GD + ++++ DL A +
Sbjct: 1 MLPEDVRGILTTHRNRDQLLEVVLDLGRRPEARF-AGDLPNEFLRDEVISQADLDAAEAS 59
Query: 164 VGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVI 223
VG+F DNR+GI+ +LHRISAIRNR+ +++GLTCRVGRAV G E+I D++ G SIL +
Sbjct: 60 VGEFGGDNRAGIEGTLHRISAIRNRRGKIVGLTCRVGRAVTGHVEMIEDMLTGNESILFL 119
Query: 224 GPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQ 283
G PGVGKTT+IREIAR+L+D+ KRVVI+DTSNEIGGDGD+PH IG ARRMQVP+ +Q
Sbjct: 120 GRPGVGKTTVIREIARVLSDELGKRVVIIDTSNEIGGDGDIPHRAIGSARRMQVPDPALQ 179
Query: 284 HSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQI 343
H +MIEAVENHMPE II+DEIGTE EA+A TIA+RGVQLVGTAHG ++N++KNP+L
Sbjct: 180 HQIMIEAVENHMPEVIIVDEIGTEEEAIACRTIAERGVQLVGTAHGQLLENLIKNPTLTD 239
Query: 344 LVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILA 403
LVGG++SVTLGD+EA+ R QKTI+ER+ PPTF +EM R+ V H ++ +VD +LA
Sbjct: 240 LVGGVQSVTLGDDEARARGCQKTIMERQAPPTFPILIEMHERS-MWVAHNVEESVDEVLA 298
Query: 404 GKLPLFEVRQMD 415
G P+ +VR D
Sbjct: 299 GGRPMVQVRSRD 310
>gi|222423588|dbj|BAH19763.1| AT1G33290 [Arabidopsis thaliana]
Length = 379
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 187/335 (55%), Positives = 246/335 (73%), Gaps = 8/335 (2%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF---PSG 143
P+S+S D L FLE+LP +R L L+EV+MDLGR P AR+ P G
Sbjct: 35 PDSSSMI---VDDNLGAFLEILPKDLRHRLLNDSRRNQLVEVIMDLGRPPEARYLGEPGG 91
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
++ + + V E+L+ A VG+F DNR+GI+ +LHRISAIRNRK ++GLTCRVGRAV
Sbjct: 92 QYLRNNE-VSMEELEDAQELVGEFGADNRAGIEGTLHRISAIRNRKGFIVGLTCRVGRAV 150
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGD 263
+G +++ DL+ G SIL +G PGVGKTT++REIAR+L+D+ KRVVI+DTSNEI GDGD
Sbjct: 151 SGHIDMLYDLLHYGKSILFVGRPGVGKTTVLREIARVLSDEFQKRVVIIDTSNEIEGDGD 210
Query: 264 VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQL 323
+PHS IG +RRMQVP ++QH VMIEAVENHMP+ II+DEIGTE EALA +IA+RGV L
Sbjct: 211 IPHSAIGGSRRMQVPKPSLQHKVMIEAVENHMPQVIIVDEIGTEAEALACRSIAERGVML 270
Query: 324 VGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMI 383
+GTAHG + NI+KNP+L L+GGIE+VTLGDEEA+ R+ QK+ILERK PPTF +EM
Sbjct: 271 IGTAHGEQLQNIIKNPTLSDLIGGIETVTLGDEEARARRSQKSILERKAPPTFYFLIEMR 330
Query: 384 SRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEH 418
R + + H+ + +VD +L G+ P+ EVR+ D E+
Sbjct: 331 ER-DYWIAHQTEKSVDMLLRGRNPMVEVRRRDEEY 364
>gi|159484693|ref|XP_001700387.1| predicted protein [Chlamydomonas reinhardtii]
gi|158272274|gb|EDO98076.1| predicted protein [Chlamydomonas reinhardtii]
Length = 324
Score = 361 bits (927), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 185/307 (60%), Positives = 228/307 (74%)
Query: 109 PSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS 168
PSR+R L ++ L+EVVMDLGR P ARFP GD + + + +DL A+ +VG F
Sbjct: 13 PSRVRAVLEARPDIEQLVEVVMDLGRPPSARFPHGDVDLCPEPMTAQDLDTAVRQVGHFD 72
Query: 169 DDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGV 228
DNR+GID +LHRISAIRNR +V+GLTCRVGRAV G+A ++ DLV G S+L++G PGV
Sbjct: 73 GDNRAGIDSTLHRISAIRNRGGRVVGLTCRVGRAVPGAAALVRDLVLAGRSVLLLGRPGV 132
Query: 229 GKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMI 288
GKTT +RE+ R+ AD+ +RVV+VDTSNEIGGDGDVPH IG ARRMQV QH+VM+
Sbjct: 133 GKTTALREVCRIAADEAARRVVVVDTSNEIGGDGDVPHPSIGGARRMQVSRPEAQHAVMV 192
Query: 289 EAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348
EAVENHMP+ ++IDEI T E AA TIAQRGVQLV TAHG +DN++KNP+L LVGGI
Sbjct: 193 EAVENHMPQVVVIDEISTLAECGAARTIAQRGVQLVATAHGRQLDNVIKNPTLADLVGGI 252
Query: 349 ESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPL 408
+SVTLGDEEAK+R VQK+ILER PPTF AVEM R RVH + A VD++LAG
Sbjct: 253 QSVTLGDEEAKRRGVQKSILERAAPPTFDVAVEMEERGRWRVHLDVAAAVDSLLAGGEAA 312
Query: 409 FEVRQMD 415
+VR +D
Sbjct: 313 GQVRLLD 319
>gi|159488761|ref|XP_001702371.1| hypothetical protein CHLREDRAFT_108035 [Chlamydomonas reinhardtii]
gi|158271165|gb|EDO96991.1| predicted protein [Chlamydomonas reinhardtii]
Length = 308
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 182/310 (58%), Positives = 236/310 (76%), Gaps = 5/310 (1%)
Query: 106 ELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF---PSGDWVISEQIVKHEDLKHAIS 162
+LLP +R L H + L+EVV+DLGR+P ARF P+G++ + +Q V DL+ A++
Sbjct: 1 QLLPEDIREPLVNHPQRASLVEVVLDLGRQPEARFQGIPAGEY-LRKQEVTPADLEAAVA 59
Query: 163 KVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILV 222
VGDF DNR+G+ +LHRISAIRNR+ +IGLTCRVGRAV+G ++ DLVE G S+L+
Sbjct: 60 AVGDFGADNRAGVPGTLHRISAIRNRRGAIIGLTCRVGRAVSGHIAMLKDLVESGHSVLL 119
Query: 223 IGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNM 282
+G PGVGKTT+IRE+ LAD++ KRVVIVDTSNEIGGDGDVPH IG ARRMQV +
Sbjct: 120 LGRPGVGKTTVIREMCATLADEYRKRVVIVDTSNEIGGDGDVPHPAIGGARRMQVADALQ 179
Query: 283 QHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
QH+VMIEAVENHMP+ +++DEIGTE EALA TIA+RGVQL+GTAHG ++N++KNP+L
Sbjct: 180 QHAVMIEAVENHMPQVVVVDEIGTEAEALACRTIAERGVQLIGTAHGCLLENLIKNPTLS 239
Query: 343 ILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAIL 402
LVGG+ VTLGDEEA+ R QKTILERK PPTF VE+ +R V H ++ +VD +L
Sbjct: 240 DLVGGVAPVTLGDEEARLRGTQKTILERKAPPTFPIVVEIRARN-FYVAHWVEDSVDQLL 298
Query: 403 AGKLPLFEVR 412
G++P+ +VR
Sbjct: 299 LGRMPVVQVR 308
>gi|412992135|emb|CCO19848.1| predicted protein [Bathycoccus prasinos]
Length = 773
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 184/332 (55%), Positives = 242/332 (72%), Gaps = 17/332 (5%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGD--------------- 144
EL + L +LPSR+R +L H +LIEVVMD+GR PLARFP G
Sbjct: 165 ELNMLLRVLPSRIREQLHKHERKLELIEVVMDVGRVPLARFPEGPAEPLYSKESLKKFDV 224
Query: 145 WVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVA 204
W + +D+ A+ +G+ DNR+GID +LHRIS IRNR+ VIGLTCRVGRAV
Sbjct: 225 WDAESSKITMDDIDEAVRLLGEVGGDNRAGIDGTLHRISMIRNRRGTVIGLTCRVGRAVK 284
Query: 205 GSAEIICDLVEGGGSILVI--GPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDG 262
G+AE+ DLV S V+ GPPGVGKTT IRE++R+L+ D +RVVIVDTSNEIGGDG
Sbjct: 285 GAAELCKDLVSSEESSSVLLLGPPGVGKTTAIREMSRLLSADFNQRVVIVDTSNEIGGDG 344
Query: 263 DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQ 322
DV H G+G +RRMQV + +QH+V+IEAVENH P+ +I+DEIGTE EA+AA TI++RGV+
Sbjct: 345 DVAHPGVGNSRRMQVADPKLQHAVLIEAVENHTPQVVIVDEIGTEEEAMAARTISERGVK 404
Query: 323 LVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEM 382
++ TAHG T++N++KNPSL LVGG++SVTLGD+EA++R+ QKTILER+GPPTF+ AVEM
Sbjct: 405 MIATAHGHTLENVLKNPSLCDLVGGVQSVTLGDDEARRRRGQKTILEREGPPTFSIAVEM 464
Query: 383 ISRTECRVHHRLDATVDAILAGKLPLFEVRQM 414
+ RVH + ++VDA+LAG+ P E+R +
Sbjct: 465 LDIGLWRVHTDVASSVDALLAGQAPFTELRAL 496
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 46/82 (56%)
Query: 480 VCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQL 539
+CV+ + + E+++ +V +G E I + + ADAIL + +K W+R A+ +
Sbjct: 680 LCVFPFELNESEVRKVFLELGFETLIHLVSRLEDADAILGVKTRVKSAKWLRHAARSRGI 739
Query: 540 PVFVIKSNTMAQMVKAVRMILG 561
P++ +K+ ++KA R +LG
Sbjct: 740 PIYAMKTERPVSLIKAARAMLG 761
>gi|297734733|emb|CBI16967.3| unnamed protein product [Vitis vinifera]
Length = 388
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 195/371 (52%), Positives = 255/371 (68%), Gaps = 9/371 (2%)
Query: 64 IHPPTVRRPSDWAPPRNGSVSDSPNSASTSRSGADIELELFLELLPSRMRRELCMHRELG 123
IH R + W P R VS + +SA + D + FLE+LP +R L +
Sbjct: 20 IHTSISLRINPWPPIRRRMVSKASHSAHLGLAVQD-DFHAFLEILPCDLRNNLLNEPKRA 78
Query: 124 DLIEVVMDLGRKPLARF--PSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHR 181
L+EV++DLGR P AR+ G + + V E+L++A + VG+F DNR+GI+ +LHR
Sbjct: 79 QLLEVILDLGRLPEARYLGDCGGKYLRDTQVSMEELEYAQNAVGEFGGDNRAGIEGTLHR 138
Query: 182 ISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARML 241
ISAIR+R ++GLTCRVGRAV+G ++I DL+ G SIL +G PGVGKTT++REIAR+L
Sbjct: 139 ISAIRSRNGVIVGLTCRVGRAVSGHVDMIRDLLPFGESILFVGRPGVGKTTVMREIARVL 198
Query: 242 ADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIII 301
+D+ +RVVIVDTSNEIGGDGD+PH+ IG ARRMQVP +MQH +MIEAVENHMPE II+
Sbjct: 199 SDELNRRVVIVDTSNEIGGDGDIPHAAIGGARRMQVPEPSMQHRIMIEAVENHMPEVIIV 258
Query: 302 DEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKR 361
DEIGTE EALA +IA+RG+ L+GTAHG ++NI+KNP+L LVGGIE+VTLGD EA+ R
Sbjct: 259 DEIGTEAEALACRSIAERGIMLIGTAHGERLENIIKNPTLSDLVGGIETVTLGDAEARAR 318
Query: 362 KVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEP 421
+ QK+ILERK PTF +EM R V H +VD +L GK PL EVR+ + +
Sbjct: 319 RCQKSILERKALPTFPFLIEMRER-HYWVTHWTQRSVDMLLHGKRPLVEVRRRNDQFE-- 375
Query: 422 LKVTPILRGSY 432
I RG+Y
Sbjct: 376 ---VVIERGTY 383
>gi|148243212|ref|YP_001228369.1| AAA ATPase [Synechococcus sp. RCC307]
gi|147851522|emb|CAK29016.1| AAA ATPase superfamily protein [Synechococcus sp. RCC307]
Length = 470
Score = 358 bits (918), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 204/452 (45%), Positives = 289/452 (63%), Gaps = 24/452 (5%)
Query: 109 PSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS 168
P R++ L DL+EVV+DLGR P AR+ + +Q V +DL+ I ++G F
Sbjct: 31 PERLQVCLAAPERRADLLEVVLDLGRLPAARYADRTDDLGDQPVSSDDLQGVIERLGPFG 90
Query: 169 DDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGV 228
DNR+GI+R+LHRISA+RNR VIGLTCRVGRAV G+ ++ DL++ G S+L++G PGV
Sbjct: 91 GDNRAGIERTLHRISAVRNRSGCVIGLTCRVGRAVFGTVAMVRDLLDTGESLLLLGRPGV 150
Query: 229 GKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMI 288
GKTT +REIAR+LADD +RV+++DTSNEI GDGD+PH IGRARR+QV +QH VMI
Sbjct: 151 GKTTALREIARVLADDLGRRVMVIDTSNEIAGDGDIPHPAIGRARRLQVARPQLQHRVMI 210
Query: 289 EAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348
EAVENHMPE I+IDEIGTE EA AA TIA+RGVQLV TAHG + N+V+NP+L LVGG+
Sbjct: 211 EAVENHMPEVIVIDEIGTEQEAQAARTIAERGVQLVATAHGNALANLVRNPTLSDLVGGV 270
Query: 349 ESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPL 408
++VTLGD+EA++R QK +LER PTF AVEM SR+ VH + ATVD +L G+
Sbjct: 271 QAVTLGDDEARRRGSQKAVLERAAEPTFPLAVEMHSRSRWMVHGDVAATVDQLLRGQSSA 330
Query: 409 FEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRS 468
EVR + + ++ PIL+G + A + + +
Sbjct: 331 PEVRSVGPDGVLVVE-RPILQGPR-----------RGAPKRPPLPAPVVPLPAPAM---A 375
Query: 469 IKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNP 528
++R +R V+ I +LQ A+ + +TD++ ADA+LA ++ ++P
Sbjct: 376 LERPLR-------VFCCGIAPRLVLQAARTR--RWPVQLTDELLRADAVLAGRHQLGRHP 426
Query: 529 WIRGVAKFHQLPVFVIKSNTMAQMVKAVRMIL 560
+R A+ +P+ VIK++++ Q+ +A+ +L
Sbjct: 427 ELRKRARDGAVPIHVIKADSLPQVQRALERLL 458
>gi|384248329|gb|EIE21813.1| hypothetical protein COCSUDRAFT_53863 [Coccomyxa subellipsoidea
C-169]
Length = 499
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 172/262 (65%), Positives = 207/262 (79%)
Query: 130 MDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRK 189
MDLGR PLAR PSGD +S+ ++ EDL +AISK+G F DDNR+GIDR+LHRIS +RNR
Sbjct: 1 MDLGRTPLARLPSGDVRLSDDVITQEDLAYAISKLGAFGDDNRAGIDRTLHRISCMRNRD 60
Query: 190 MQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRV 249
++IGLTCR GRAV GSA++ DL+ G SIL +G PGVGKTT+IRE +R+L+ H KRV
Sbjct: 61 GRIIGLTCRAGRAVPGSADMAADLIASGRSILFMGRPGVGKTTVIRETSRLLSQLHQKRV 120
Query: 250 VIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELE 309
VI+DTSNEIGGDGD+ H GIGRARRMQV V QH MIEAVENHMPE +I+DEIGTE E
Sbjct: 121 VIIDTSNEIGGDGDIAHIGIGRARRMQVSKVAAQHRTMIEAVENHMPEVVIVDEIGTEAE 180
Query: 310 ALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILE 369
ALAA +IAQRGVQLV TAHG + ++KNP+L L+GGI++VTL DEEAK+RK KT++E
Sbjct: 181 ALAARSIAQRGVQLVATAHGGELARLIKNPTLSDLIGGIQAVTLSDEEAKRRKGPKTVIE 240
Query: 370 RKGPPTFTCAVEMISRTECRVH 391
R PPTF AVE+I R RVH
Sbjct: 241 RCAPPTFDVAVEIIDRNTWRVH 262
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 21/181 (11%)
Query: 499 MGLEDEIDVTDDIGTADAILASSSEMKQNPW-IRGVAKFHQLPVFVIKSNTMAQMVKAVR 557
+GL+ + +T + ADA+L ++ + A+ +F +KS + ++KA+R
Sbjct: 329 LGLQRSVLLTPHLHEADAVLTVRERLRGGGDDLINEARAAGQAIFSMKSGSPPSVIKAIR 388
Query: 558 MILGMESFGTISKLPNK-STSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAV 616
+ G+ P+ S D + K+ ALEE + A+E +V+ GG A
Sbjct: 389 ALAGI--------YPSPLSLRDASAATNYKKKSA------ALEEAKAAVEELVLAGGHAA 434
Query: 617 ELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRLNKNKKSFS-----NSSNS 671
ELLPR +I++ Q +LV SY L E G++ + RL+ILP K S +S NS
Sbjct: 435 ELLPRSPDILSAQEDLVRSYDLPFEVVGSDADARLRILPQGYVSGDKERSLGAEWDSRNS 494
Query: 672 G 672
G
Sbjct: 495 G 495
>gi|444914392|ref|ZP_21234535.1| hypothetical protein D187_06705 [Cystobacter fuscus DSM 2262]
gi|444714624|gb|ELW55503.1| hypothetical protein D187_06705 [Cystobacter fuscus DSM 2262]
Length = 582
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 236/544 (43%), Positives = 322/544 (59%), Gaps = 36/544 (6%)
Query: 123 GDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRI 182
G+++EVVMDLGR P AR G +SE V ++L+ I++VG +DNR+GI+R+LHR+
Sbjct: 37 GEVLEVVMDLGRPPEARLVGGVARLSEAPVTRKELEQVIAQVGSVGEDNRAGIERTLHRV 96
Query: 183 SAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLA 242
SAIRNR+ +V+GLT RVGRA+ G+ +++ DL+ G +IL++G PGVGKTT +RE+AR+LA
Sbjct: 97 SAIRNRRGKVVGLTLRVGRAIFGTIDMLKDLIASGQNILLLGRPGVGKTTKLREVARVLA 156
Query: 243 DDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
DD KRV++VDTSNEIGGDGD+PH GIG ARRMQV + QH VMIEAVENHMPE II+D
Sbjct: 157 DDLGKRVMVVDTSNEIGGDGDIPHPGIGGARRMQVSRPDRQHDVMIEAVENHMPEAIIVD 216
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRK 362
EIGT EA AA TIA+RGVQLV TAHG T++N+V NP+L LVGG+ +VTL DEEA++R
Sbjct: 217 EIGTSAEAAAARTIAERGVQLVATAHGNTLENLVLNPTLSDLVGGVHTVTLSDEEARRRH 276
Query: 363 VQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPL 422
QKTI ERKGPPTF VEM+SR E RVH VD +LAG++P E RQ+ E
Sbjct: 277 TQKTITERKGPPTFDVVVEMVSRDEVRVHGDTAEAVDRLLAGEVPGGEQRQLVGGQVEVK 336
Query: 423 KVTPI-----LRGSYPEESELTINEDKSAEMESDEDSEDEDYASNQFKNRSIKR-SVRKP 476
+P+ RG+ A + A + S+ R V +
Sbjct: 337 PASPVDSPRPARGAPSPARPPPPPLRPLAAPSRLASGKARPAAPEAPRPESLSREEVERR 396
Query: 477 SPPVCVYTYRI----LEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRG 532
P + T R+ + DLL+ + L + V + +AD IL S +P +R
Sbjct: 397 HPGLRQGTTRLYAHAVSRDLLERV-LRDLAVDAKVIGRLESADLILTLRSR-ANDPKLRK 454
Query: 533 VAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTL 592
+A +PV IK N+ ++M + +R ++F E E++ R+ L
Sbjct: 455 LAGKAGVPVLAIKRNSSSEMRRVLR-----DAFLL-----------AEGENEERIREAVL 498
Query: 593 EEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQ 652
E +A++ R+ E +V+P L PR + Q LV Y L A + G+E L
Sbjct: 499 EAEEAIQ--RVLGESVVVP------LAPRPPRLRKLQHRLVSRYHLEAISHGSEPQRHLV 550
Query: 653 ILPL 656
I PL
Sbjct: 551 IYPL 554
>gi|194477061|ref|YP_002049240.1| hypothetical protein PCC_0600 [Paulinella chromatophora]
gi|171192068|gb|ACB43030.1| hypothetical protein PCC_0600 [Paulinella chromatophora]
Length = 477
Score = 356 bits (913), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 194/465 (41%), Positives = 292/465 (62%), Gaps = 15/465 (3%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
EL L +LP+R+ + L +++ +L+E+++DLG+ P+A + + ++ ++ + DL+
Sbjct: 19 ELNHLLNILPARVYQALSNQQKMEELLEIILDLGKIPIAHYRNNSLLLGDKPITRIDLER 78
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++G F +DNR GID +LHRISA+RNRK +IGLTCRVGRA+ G +I DL++ G S
Sbjct: 79 ITERLGSFGEDNRVGIDSTLHRISALRNRKGTIIGLTCRVGRAICGDIIMIRDLLDSGQS 138
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PG+GKTT +REIAR+LADD +RV+I+DTSNEI GD D+PH IG+ARRMQV N
Sbjct: 139 ILIMGCPGIGKTTALREIARLLADDLNRRVIIIDTSNEIAGDSDIPHPSIGKARRMQVAN 198
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
N+QH +MIEA+ENH PE I+IDEIGTE+EA AA TIA+RG+QL+ TAHG + ++VKNP
Sbjct: 199 PNLQHRMMIEAIENHTPEVIVIDEIGTEMEAQAARTIAERGIQLIATAHGDGLASLVKNP 258
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGI+SV LGD+EA++R QKT+LER PTF A+EM + +H + VD
Sbjct: 259 TLSDLVGGIQSVILGDDEAQRRCTQKTVLERAADPTFPVAIEMHTSHRWSIHADVAHMVD 318
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMES----DEDSE 455
IL + + + K PI GS ++S L + + + + + + S
Sbjct: 319 IILRN----WNSSSSLSRDYLSNKGLPI--GSKTDKSSLLVANNLTNSLSTNFWKNSRSR 372
Query: 456 DEDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTAD 515
ED N + + + + C L +L+ + K + + D++ +AD
Sbjct: 373 TEDLNPNMKYDSTDMLVLPELIRIFCCGITCKLLNELILIYKW-----PLRLIDNVRSAD 427
Query: 516 AILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMIL 560
IL+ + N IR A+ H++P+ +IKS T+A + +A+ +L
Sbjct: 428 IILSVPKYLSHNTLIRRHAQNHRIPILIIKSETVADIRQAIERVL 472
>gi|303285736|ref|XP_003062158.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456569|gb|EEH53870.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 570
Score = 355 bits (911), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 192/367 (52%), Positives = 244/367 (66%), Gaps = 25/367 (6%)
Query: 50 ARKTFVSQKPTPPSIHPPTVRRPSDWAPPRNGSVSDSPNSASTSRSGADIELELFLELLP 109
AR + P P H VR + R+ +L+ + +LP
Sbjct: 51 ARDCGAADAPCFPEEHDCAVRDADGFTTYRD-------------------DLDAMIGMLP 91
Query: 110 SRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQI----VKHEDLKHAISKVG 165
S +R L H L+EV++DLGR P+ARF GD V E + V EDL+ A + VG
Sbjct: 92 SDVREVLMCHPHRASLVEVILDLGRCPVARF-VGDAVPDECLRAAPVTAEDLRKAEASVG 150
Query: 166 DFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGP 225
DF DNR+GI+ +LHRIS IRNR +++GLTCRVGRAV G ++I DL+ S L +G
Sbjct: 151 DFGGDNRAGIEGTLHRISCIRNRAGKIVGLTCRVGRAVNGHVDMIQDLLGSSESCLFLGR 210
Query: 226 PGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHS 285
PGVGKTT+IRE+AR+L+D+ KRVVI+DTSNEIGGDGDVPH IG ARRMQVP + QH
Sbjct: 211 PGVGKTTVIREMARVLSDELGKRVVIIDTSNEIGGDGDVPHPAIGGARRMQVPEPSAQHK 270
Query: 286 VMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
VMIEAVENHMPE II+DEIGTE EALA TIA+RGVQLVGTAHG ++N+++NP+L+ LV
Sbjct: 271 VMIEAVENHMPEVIIVDEIGTEAEALACRTIAERGVQLVGTAHGQLLENLIQNPTLKDLV 330
Query: 346 GGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGK 405
GGI+SVTLGD+EA+ R QKTI+ER GP TF +EM R+ V H ++ +VD IL G
Sbjct: 331 GGIQSVTLGDDEARARGCQKTIMERAGPATFPIVIEMHERS-FWVAHNVEESVDEILTGG 389
Query: 406 LPLFEVR 412
P+ + R
Sbjct: 390 RPMVQTR 396
>gi|226531438|ref|NP_001144701.1| uncharacterized protein LOC100277737 [Zea mays]
gi|195645988|gb|ACG42462.1| hypothetical protein [Zea mays]
gi|414865048|tpg|DAA43605.1| TPA: hypothetical protein ZEAMMB73_327805 [Zea mays]
Length = 390
Score = 355 bits (910), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 184/320 (57%), Positives = 236/320 (73%), Gaps = 3/320 (0%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF--PSGDWVISEQIVKHEDL 157
+L L++LP +R L L+EV++DLGR+P ARF SG + + + ++L
Sbjct: 56 DLSELLQILPRDLRDNLQNEPRKDQLLEVILDLGRRPEARFLGDSGGQYLRDSEISQKEL 115
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+ A VG+F DNR+GI+ +LHRISAIR+RK V+GLTCRVGRAV G +++ DL+
Sbjct: 116 EDAQKAVGEFGGDNRAGIEGTLHRISAIRSRKGMVVGLTCRVGRAVTGHVDMVRDLLNYK 175
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
SIL +G PGVGKTT++REIAR+LAD+ KRVVIVDTSNEIGGDGDVPH+ IG ARRMQV
Sbjct: 176 ESILFLGRPGVGKTTVMREIARVLADEFQKRVVIVDTSNEIGGDGDVPHAAIGGARRMQV 235
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
P +MQH VMIEAVENHMPE +I+DEIGTE EA A +IA+RGV L+GTAHG + NI+K
Sbjct: 236 PEPSMQHRVMIEAVENHMPEVVIVDEIGTEAEAQACRSIAERGVMLIGTAHGERLANIIK 295
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NP+L L+GG+E+VTLGD+EA+ R+ QK+ILERK PPTF +EM R V HR + +
Sbjct: 296 NPTLSDLIGGVETVTLGDDEARARRSQKSILERKAPPTFPFLIEMRERHYW-VTHRTERS 354
Query: 398 VDAILAGKLPLFEVRQMDAE 417
VD +L GK PL EVR+ D+E
Sbjct: 355 VDMLLHGKKPLVEVRKRDSE 374
>gi|357504105|ref|XP_003622341.1| F-box protein [Medicago truncatula]
gi|355497356|gb|AES78559.1| F-box protein [Medicago truncatula]
Length = 663
Score = 354 bits (909), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 179/318 (56%), Positives = 233/318 (73%), Gaps = 3/318 (0%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF--PSGDWVISEQIVKHEDL 157
+L+ L++LPS + L L+EV++DLGR P AR+ +G+ + V +L
Sbjct: 329 DLQALLQILPSDLHHNLLNQPNRPQLLEVILDLGRFPEARYLGKNGNHYLRNSEVTVREL 388
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
++A VG+F DNR+GI+ +LHRISAIR+R ++GLTCR+GRAV G +++ DL+ G
Sbjct: 389 EYAEGAVGNFGKDNRAGIEGTLHRISAIRSRNGGIVGLTCRIGRAVTGHIDMVYDLLHYG 448
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
SIL +G PGVGKTT++REIAR+L+D+ KRVVIVDTSNEIGGDG++PH+ IG ARRMQV
Sbjct: 449 KSILFLGRPGVGKTTVMREIARVLSDEFHKRVVIVDTSNEIGGDGNIPHAAIGGARRMQV 508
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
+MQHSVMIEAVENHMPE II+DEIGTE EA A +IA+RG+ L+GTAHG I+N++K
Sbjct: 509 SEPSMQHSVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGIMLIGTAHGQQIENVMK 568
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NP+L L+GGIESVTLGD EA+ RK QKTILERK PPTF +EM R + H+ D +
Sbjct: 569 NPTLSDLIGGIESVTLGDYEARARKCQKTILERKAPPTFDFLIEMRDR-HYWITHQTDKS 627
Query: 398 VDAILAGKLPLFEVRQMD 415
VD +L GK P EVR+ D
Sbjct: 628 VDILLRGKTPQVEVRKRD 645
>gi|374851690|dbj|BAL54642.1| single-stranded nucleic acid binding R3H [uncultured Chloroflexi
bacterium]
Length = 517
Score = 354 bits (909), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 206/467 (44%), Positives = 296/467 (63%), Gaps = 53/467 (11%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ L +LP+ +R + + +L+EV++DLGR P ARF + V+ E+ V E++++
Sbjct: 9 DLDALLAVLPADIRHAVEQADDSDNLLEVILDLGRVPTARFVDREVVLREREVTREEIEY 68
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++VG+F DNR+GI+R+LHRISAIRNR+ ++GLT RVGRAV G+++II D++ G S
Sbjct: 69 VDARVGEFDADNRAGIERTLHRISAIRNRRGHIVGLTLRVGRAVYGTSDIIEDIITSGKS 128
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTTL+RE AR+LA+ +RV+IVDTSNEIGGDGDVPH IG+ARRMQV
Sbjct: 129 ILLLGRPGVGKTTLLREAARILAE--TRRVIIVDTSNEIGGDGDVPHPAIGKARRMQVRE 186
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH VMIEAVENH PE I+IDEIG ELEA AA TIA+RGVQL+GTAHG T++N++ NP
Sbjct: 187 PMLQHEVMIEAVENHNPEVIVIDEIGRELEAAAARTIAERGVQLIGTAHGNTLENLLLNP 246
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGGIE+VTL DEEA++R QKT+LER+ PPTF +E+ +R +H + VD
Sbjct: 247 TLSDLVGGIEAVTLSDEEARRRGTQKTVLERRAPPTFDVLIEIQNRDRLAIHMDVATAVD 306
Query: 400 AILAGK--LPLFEVRQMDAEHHEPLKVT-PILRGSYPEESELTINEDKSAEMESDEDSED 456
A+L G+ P +R+ D +++ +L+ + P+ES +ES
Sbjct: 307 ALLRGRPIPPEIRIREPDGR----IRIERSVLQPAEPQESP----GRSPLPIES------ 352
Query: 457 EDYASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADA 516
++ F S + P+ +Y Y + L+Q AK +G+ A
Sbjct: 353 ----ASAFPAGSAALA------PIRIYPYGVARNRLMQAAKRLGV-------------PA 389
Query: 517 ILASSSEMKQN-PWIRGVAKFHQ----------LPVFVIKSNTMAQM 552
IL S+E Q +R + HQ +P++V++SNT+ Q+
Sbjct: 390 ILVRSAEEAQALVTLRTYYRTHQHTILEAEERGVPIYVLRSNTVNQI 436
>gi|77553351|gb|ABA96147.1| expressed protein [Oryza sativa Japonica Group]
Length = 395
Score = 354 bits (908), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 191/373 (51%), Positives = 248/373 (66%), Gaps = 5/373 (1%)
Query: 47 TRRARKTFVSQKPTPPSIHPPTVRRPSDWAPPRNGSVSDSPNSASTSRSGADIELELF-- 104
TR ++ KP+PP RP + +E +L+
Sbjct: 6 TRLLHLPLLAPKPSPPRCLVSRRSRPRPAGDAARCGCATEAGGGGGGGGSVVVEDDLYEL 65
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF--PSGDWVISEQIVKHEDLKHAIS 162
L++LP +R L L+EV++DLGR+P ARF SG + + + ++L+ A
Sbjct: 66 LQVLPRDLRDNLQNEPRKDQLLEVILDLGRRPEARFLGDSGGQYLRDSEISQQELEEAQR 125
Query: 163 KVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILV 222
VG+F DNR+GI+ +LHRISAIR+RK V+GLTCRVGRAV G +++ DL+ SIL
Sbjct: 126 AVGEFGGDNRAGIEGTLHRISAIRSRKGMVVGLTCRVGRAVTGHVDMVRDLLNYKESILF 185
Query: 223 IGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNM 282
+G PGVGKTT++REIAR+LAD+ KRVVIVDTSNEIGGDGD+PH+ IG ARRMQV +M
Sbjct: 186 LGRPGVGKTTVMREIARVLADEFQKRVVIVDTSNEIGGDGDIPHAAIGGARRMQVAQPSM 245
Query: 283 QHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
QH VMIEAVENHMPE +I+DEIGTE EA A +IA+RGV L+GTAHG + NI+KNP+L
Sbjct: 246 QHRVMIEAVENHMPEVVIVDEIGTEAEAQACRSIAERGVMLIGTAHGEHLANIIKNPTLS 305
Query: 343 ILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAIL 402
L+GG+E+VTLGDEEA+ R+ QK+ILERK PPTF +EM R V HR + +VD +L
Sbjct: 306 DLIGGVETVTLGDEEARARRSQKSILERKAPPTFPFLIEMRERHYW-VTHRTERSVDMLL 364
Query: 403 AGKLPLFEVRQMD 415
GK PL EVR+ D
Sbjct: 365 HGKKPLVEVRKRD 377
>gi|357160507|ref|XP_003578787.1| PREDICTED: uncharacterized protein ycf45-like [Brachypodium
distachyon]
Length = 388
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 184/320 (57%), Positives = 234/320 (73%), Gaps = 3/320 (0%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF--PSGDWVISEQIVKHEDL 157
+L L++LP+ +R L L+EV++DLGR+P ARF SG + + + +L
Sbjct: 54 DLAELLQILPTDLRDNLKNEPRRDQLLEVILDLGRRPEARFLGNSGGQYLRDSEISQLEL 113
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+ A VG+F DNR+GI+ +LHRISAIR+RK V+GLTCRVGRAV G +++ DL+
Sbjct: 114 EEAQKAVGEFGGDNRAGIEGTLHRISAIRSRKGMVVGLTCRVGRAVNGHVDMVRDLLNYK 173
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
SIL +G PGVGKTT++REIAR+LAD+ KRVVIVDTSNEIGGDGD+PH+ IG ARRMQV
Sbjct: 174 ESILFLGRPGVGKTTVMREIARVLADEFQKRVVIVDTSNEIGGDGDIPHAAIGGARRMQV 233
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
P +MQH VMIEAVENHMPE +I+DEIGTE EA A +IA+RGV L+GTAHG + NI+K
Sbjct: 234 PEPSMQHRVMIEAVENHMPEVVIVDEIGTEAEAQACRSIAERGVMLIGTAHGERLANIIK 293
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NP L L+GG+E+VTLGDEEA+ R+ QK+ILERK PPTF +EM R V HR + +
Sbjct: 294 NPVLSDLIGGVETVTLGDEEARARRTQKSILERKAPPTFPFLIEMRER-HYWVTHRTERS 352
Query: 398 VDAILAGKLPLFEVRQMDAE 417
VD +L GK PL EVR+ D E
Sbjct: 353 VDMLLHGKKPLVEVRKRDNE 372
>gi|317968814|ref|ZP_07970204.1| ATPase [Synechococcus sp. CB0205]
Length = 318
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 184/316 (58%), Positives = 227/316 (71%)
Query: 89 SASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVIS 148
SA TS +L+ LE+LP +R L L+EVV+DLGR P AR+P +
Sbjct: 3 SAPTSPQRITDDLDRLLEVLPEAVRSALGSAEAREQLLEVVLDLGRIPEARYPGRAVPLG 62
Query: 149 EQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAE 208
++ DL + ++G F DNR+GI+R+LHRISAIRNR V+GLTCRVGRAV G+
Sbjct: 63 ANPIERSDLAAVVEQLGTFGGDNRAGIERTLHRISAIRNRSGDVVGLTCRVGRAVFGTVA 122
Query: 209 IICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSG 268
++ DL++ G S+L++G PGVGKTT +REIAR+LAD+ KRVV++DTSNEI GDGD+PH
Sbjct: 123 MVRDLMDSGQSLLLMGRPGVGKTTALREIARVLADELDKRVVVIDTSNEIAGDGDIPHPA 182
Query: 269 IGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAH 328
IGRARRMQV +QH VMIEAVENHMPE I+IDEIGTELEA AA TIA+RGV LV TAH
Sbjct: 183 IGRARRMQVTRPELQHQVMIEAVENHMPEIIVIDEIGTELEAQAARTIAERGVMLVATAH 242
Query: 329 GMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTEC 388
G + N+VKNP+L LVGGIESVTLGDEEA++R+ QKT+LER PTF AVEM SR
Sbjct: 243 GNELANLVKNPTLSDLVGGIESVTLGDEEARRRRTQKTVLERAAEPTFPMAVEMHSRDRW 302
Query: 389 RVHHRLDATVDAILAG 404
VH + TVD +L G
Sbjct: 303 LVHRDVARTVDLLLRG 318
>gi|326506502|dbj|BAJ86569.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 387
Score = 352 bits (903), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 185/320 (57%), Positives = 233/320 (72%), Gaps = 3/320 (0%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF--PSGDWVISEQIVKHEDL 157
+L L++LP +R L L+EV++DLGR+P ARF SG + + + +L
Sbjct: 53 DLSELLQILPKDLRDNLQNEPRRDQLLEVILDLGRQPEARFLGNSGGQYLRDNEISQLEL 112
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+ A VG+F DNR+GI+ +LHRISAIR+RK V+GLTCRVGRAV G +++ DL+
Sbjct: 113 EEAQRAVGEFGRDNRAGIEGTLHRISAIRSRKGLVVGLTCRVGRAVNGHVDMVRDLLNYK 172
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
SIL +G PGVGKTT++REIAR+LAD+ KRVVIVDTSNEIGGDGD+PH+ IG ARRMQV
Sbjct: 173 ESILFLGRPGVGKTTVMREIARVLADEFQKRVVIVDTSNEIGGDGDIPHAAIGGARRMQV 232
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
P +MQH VMIEAVENHMPE +I+DEIGTE EA A +IA+RGV L+GTAHG + NI+K
Sbjct: 233 PEPSMQHRVMIEAVENHMPEVVIVDEIGTESEAQACRSIAERGVMLIGTAHGERLANIIK 292
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NP L LVGG+E+VTLGDEEA+ R+ QK+ILERK PPTF +EM R V HR + +
Sbjct: 293 NPVLSDLVGGVETVTLGDEEARARRTQKSILERKAPPTFPFLIEMRER-HYWVTHRTERS 351
Query: 398 VDAILAGKLPLFEVRQMDAE 417
VD +L GK PL EVR+ D E
Sbjct: 352 VDMLLHGKKPLVEVRKRDNE 371
>gi|384251818|gb|EIE25295.1| hypothetical protein COCSUDRAFT_13766, partial [Coccomyxa
subellipsoidea C-169]
Length = 322
Score = 352 bits (902), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 178/307 (57%), Positives = 229/307 (74%), Gaps = 3/307 (0%)
Query: 107 LLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF--PSGDWVISEQIVKHEDLKHAISKV 164
+LP +R L H+ L+EVV+DLGR+P ARF G + + + +DLK A V
Sbjct: 1 VLPEDIREPLVQHQNRASLLEVVLDLGRRPEARFLGVGGGEYLRDAEITWDDLKAAEDAV 60
Query: 165 GDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIG 224
GDF DNR+G+ +LHRISA+RNRK ++GLTCRVGRAV G ++I D+++ S+L +G
Sbjct: 61 GDFGSDNRAGVQGTLHRISAMRNRKGTIVGLTCRVGRAVTGHVDMIRDILDVPNSVLFLG 120
Query: 225 PPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQH 284
PGVGKTT+IRE+AR+L+DD KRVVIVDTSNEIGGDGDVPH IG ARRMQVP+ + QH
Sbjct: 121 RPGVGKTTVIREMARILSDDLKKRVVIVDTSNEIGGDGDVPHPAIGGARRMQVPDPSQQH 180
Query: 285 SVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
VM+EAVENHMPE +I+DEIGTE EALA TIA+RGVQL+ TAHG ++N++KNP+L L
Sbjct: 181 KVMVEAVENHMPEIVIVDEIGTEAEALACRTIAERGVQLIATAHGQLLENLLKNPTLSDL 240
Query: 345 VGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAG 404
VGGI+SVTLGDEEA+ R QK++LERK PPTF +EM R V H ++ +VD +L G
Sbjct: 241 VGGIQSVTLGDEEARARGTQKSVLERKAPPTFPLVIEMRERAYW-VTHWVEDSVDCLLHG 299
Query: 405 KLPLFEV 411
K+P+ +V
Sbjct: 300 KVPVVQV 306
>gi|412993135|emb|CCO16668.1| single-stranded nucleic acid binding R3H domain-containing protein
[Bathycoccus prasinos]
Length = 484
Score = 351 bits (901), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 179/326 (54%), Positives = 233/326 (71%), Gaps = 9/326 (2%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWV------ISEQIVK 153
+L L ++P +R ++ H L+E+V+DLGR+P ARF + V + + +V
Sbjct: 30 DLTEMLSIVPEDVREKISKHAHRSKLLEIVLDLGRQPEARFSGMEDVKKQSETLRDDVVT 89
Query: 154 HEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDL 213
E+L HA VG+F DNR+G+ +LHRIS IRNR ++IGLTCRVGRAV G ++I D+
Sbjct: 90 QEELDHAERVVGEFGGDNRAGVTGTLHRISCIRNRSGKIIGLTCRVGRAVTGHVDMIADV 149
Query: 214 V--EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGR 271
+ + G S+L +G PGVGKTT+IREIAR+L+DD KRVVI+DTSNEIGGDGD+PH IG
Sbjct: 150 LNRDNGESVLFLGKPGVGKTTVIREIARVLSDDLQKRVVIIDTSNEIGGDGDIPHPAIGS 209
Query: 272 ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331
ARRMQVPN + QH VMIEAVENH PE II+DEIGTE+EALA TIA+RGVQL+GTAHG
Sbjct: 210 ARRMQVPNPSEQHKVMIEAVENHTPEIIIVDEIGTEMEALACRTIAERGVQLIGTAHGRL 269
Query: 332 IDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVH 391
++N++KNP+L LVGG+ +VTLGD+EA+ R QKTI ER P TF VEM +R+ V
Sbjct: 270 LENLIKNPTLSDLVGGVTTVTLGDDEARSRGCQKTISERAAPATFPIVVEMHARS-MWVE 328
Query: 392 HRLDATVDAILAGKLPLFEVRQMDAE 417
H ++ +VD IL G P+ +R D E
Sbjct: 329 HDVEVSVDDILVGNRPVVNLRTRDEE 354
>gi|218186582|gb|EEC69009.1| hypothetical protein OsI_37798 [Oryza sativa Indica Group]
Length = 484
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 181/313 (57%), Positives = 231/313 (73%), Gaps = 3/313 (0%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF--PSGDWVISEQIVKHEDLKHAIS 162
L++LP +R L L+EV++DLGR+P ARF SG + + + ++L+ A
Sbjct: 78 LQVLPRDLRDNLQNEPRKDQLLEVILDLGRRPEARFLGDSGGQYLRDSEISQQELEEAQR 137
Query: 163 KVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILV 222
VG+F DNR+GI+ +LHRISAIR+RK V+GLTCRVGRAV G +++ DL+ SIL
Sbjct: 138 AVGEFGGDNRAGIEGTLHRISAIRSRKGMVVGLTCRVGRAVTGHVDMVRDLLNYKESILF 197
Query: 223 IGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNM 282
+G PGVGKTT++REIAR+LAD+ KRVVIVDTSNEIGGDGD+PH+ IG ARRMQV +M
Sbjct: 198 LGRPGVGKTTVMREIARVLADEFQKRVVIVDTSNEIGGDGDIPHAAIGGARRMQVAQPSM 257
Query: 283 QHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
QH VMIEAVENHMPE +I+DEIGTE EA A +IA+RGV L+GTAHG + NI+KNP+L
Sbjct: 258 QHRVMIEAVENHMPEVVIVDEIGTEAEAQACRSIAERGVMLIGTAHGEHLANIIKNPTLS 317
Query: 343 ILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAIL 402
L+GG+E+VTLGDEEA+ R+ QK+ILERK PPTF +EM R V HR + +VD +L
Sbjct: 318 DLIGGVETVTLGDEEARARRSQKSILERKAPPTFPFLIEMRER-HYWVTHRTERSVDMLL 376
Query: 403 AGKLPLFEVRQMD 415
GK PL EVR+ D
Sbjct: 377 HGKKPLVEVRKRD 389
>gi|359493523|ref|XP_002264380.2| PREDICTED: uncharacterized protein ycf45-like [Vitis vinifera]
gi|147770825|emb|CAN76429.1| hypothetical protein VITISV_023566 [Vitis vinifera]
Length = 351
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 189/352 (53%), Positives = 248/352 (70%), Gaps = 9/352 (2%)
Query: 83 VSDSPNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF-- 140
VS + +SA + D + FLE+LP +R L + L+EV++DLGR P AR+
Sbjct: 2 VSKASHSAHLGLAVQD-DFHAFLEILPCDLRNNLLNEPKRAQLLEVILDLGRLPEARYLG 60
Query: 141 PSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVG 200
G + + V E+L++A + VG+F DNR+GI+ +LHRISAIR+R ++GLTCRVG
Sbjct: 61 DCGGKYLRDTQVSMEELEYAQNAVGEFGGDNRAGIEGTLHRISAIRSRNGVIVGLTCRVG 120
Query: 201 RAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGG 260
RAV+G ++I DL+ G SIL +G PGVGKTT++REIAR+L+D+ +RVVIVDTSNEIGG
Sbjct: 121 RAVSGHVDMIRDLLPFGESILFVGRPGVGKTTVMREIARVLSDELNRRVVIVDTSNEIGG 180
Query: 261 DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRG 320
DGD+PH+ IG ARRMQVP +MQH +MIEAVENHMPE II+DEIGTE EALA +IA+RG
Sbjct: 181 DGDIPHAAIGGARRMQVPEPSMQHRIMIEAVENHMPEVIIVDEIGTEAEALACRSIAERG 240
Query: 321 VQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAV 380
+ L+GTAHG ++NI+KNP+L LVGGIE+VTLGD EA+ R+ QK+ILERK PTF +
Sbjct: 241 IMLIGTAHGERLENIIKNPTLSDLVGGIETVTLGDAEARARRCQKSILERKALPTFPFLI 300
Query: 381 EMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSY 432
EM R V H +VD +L GK PL EVR+ + + I RG+Y
Sbjct: 301 EMRER-HYWVTHWTQRSVDMLLHGKRPLVEVRRRNDQFE-----VVIERGTY 346
>gi|427703065|ref|YP_007046287.1| hypothetical protein Cyagr_1807 [Cyanobium gracile PCC 6307]
gi|427346233|gb|AFY28946.1| hypothetical protein Cyagr_1807 [Cyanobium gracile PCC 6307]
Length = 534
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 176/311 (56%), Positives = 227/311 (72%)
Query: 107 LLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGD 166
+LP ++R L + L+EVV+DLGR P AR+P + ++ DL + ++G
Sbjct: 1 MLPPVVQRALAGPEQREGLLEVVLDLGRVPEARYPGRVRALGNDAIERADLAAVLQRLGP 60
Query: 167 FSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPP 226
F DNR+GI+R+LHRISAIRNR V+GLTCRVGRAV G+ ++ DL++ G S+L++G P
Sbjct: 61 FGGDNRAGIERTLHRISAIRNRTGDVVGLTCRVGRAVFGTVAMVRDLLDTGQSLLLMGRP 120
Query: 227 GVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSV 286
GVGKTT +REIAR+LADD +RVV++DTSNEI GDGD+PH IGRARRMQV +QH V
Sbjct: 121 GVGKTTALREIARVLADDLQRRVVVIDTSNEIAGDGDIPHPAIGRARRMQVARPELQHQV 180
Query: 287 MIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVG 346
MIEAVENHMPE I+IDEIGTELEA AA TIA+RGV LV TAHG + N+++NP+L LVG
Sbjct: 181 MIEAVENHMPEVIVIDEIGTELEAQAARTIAERGVMLVATAHGNELANLIRNPTLSDLVG 240
Query: 347 GIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKL 406
GI+SVTLGDEEA++R+ QKT+LER PTF AVEM SR VH + TVD +L G+
Sbjct: 241 GIQSVTLGDEEARRRRTQKTVLERAAEPTFPLAVEMHSRHRWLVHRDVAGTVDLLLRGQP 300
Query: 407 PLFEVRQMDAE 417
+VR++ +
Sbjct: 301 SHPQVRELGGD 311
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 21/156 (13%)
Query: 505 IDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMIL---- 560
+ V + ADA+L+ ++ ++P +R A+ LP+ VIKS+T Q+ +A+ +L
Sbjct: 394 VQVVEGPEQADAVLSVRGQLGRDPELRRQARDLGLPILVIKSDTPHQLQRAMERLLERRR 453
Query: 561 -GMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELL 619
G E+ G + P + DDA ALEE RLA+E +V+P G VELL
Sbjct: 454 GGGEADGGETAAPARL-------DDAHA---------ALEECRLAVEQVVLPEGRPVELL 497
Query: 620 PRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
PR + A Q ELV Y+L + G L RL++ P
Sbjct: 498 PRSEAVRALQAELVHHYRLRSAVFGRGLQQRLRVFP 533
>gi|297612841|ref|NP_001066391.2| Os12g0209000 [Oryza sativa Japonica Group]
gi|255670139|dbj|BAF29410.2| Os12g0209000 [Oryza sativa Japonica Group]
Length = 402
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 193/371 (52%), Positives = 251/371 (67%), Gaps = 11/371 (2%)
Query: 47 TRRARKTFVSQKPTPPSIHPPTVRRP---SDWAPPRNGSVSDSPNSASTSRSGADIELEL 103
TR ++ KP+PP RP D A R G +++ S +E +L
Sbjct: 6 TRLLHLPLLAPKPSPPRCLVSRRSRPRPAGDAA--RCGCATEAGGGGGGGGS-VVVEDDL 62
Query: 104 F--LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF--PSGDWVISEQIVKHEDLKH 159
+ L++LP +R L L+EV++DLGR+P ARF SG + + + ++L+
Sbjct: 63 YELLQVLPRDLRDNLQNEPRKDQLLEVILDLGRRPEARFLGDSGGQYLRDSEISQQELEE 122
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
A VG+F DNR+GI+ +LHRISAIR+RK V+GLTCRVGRAV G +++ DL+ S
Sbjct: 123 AQRAVGEFGGDNRAGIEGTLHRISAIRSRKGMVVGLTCRVGRAVTGHVDMVRDLLNYKES 182
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL +G PGVGKTT++REIAR+LAD+ KRVVIVDTSNEIGGDGD+PH+ IG ARRMQV
Sbjct: 183 ILFLGRPGVGKTTVMREIARVLADEFQKRVVIVDTSNEIGGDGDIPHAAIGGARRMQVAQ 242
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+MQH VMIEAVENHMPE +I+DEIGTE EA A +IA+RGV L+GTAHG + NI+KNP
Sbjct: 243 PSMQHRVMIEAVENHMPEVVIVDEIGTEAEAQACRSIAERGVMLIGTAHGEHLANIIKNP 302
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GG+E+VTLGDEEA+ R+ QK+ILERK PPTF +EM R V HR + +VD
Sbjct: 303 TLSDLIGGVETVTLGDEEARARRSQKSILERKAPPTFPFLIEMRER-HYWVTHRTERSVD 361
Query: 400 AILAGKLPLFE 410
+L GK PL E
Sbjct: 362 MLLHGKKPLVE 372
>gi|356576569|ref|XP_003556403.1| PREDICTED: uncharacterized protein ycf45-like [Glycine max]
Length = 393
Score = 348 bits (893), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 178/320 (55%), Positives = 232/320 (72%), Gaps = 3/320 (0%)
Query: 98 DIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF--PSGDWVISEQIVKHE 155
D +L+ L++LPS + L L+EV++DLGR P AR+ G + V +
Sbjct: 57 DDDLQALLQILPSDLHHNLLNQPNRPQLLEVILDLGRFPEARYLGKHGGHSLRNTEVTVK 116
Query: 156 DLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVE 215
+L++A VG+F DNR+GI+ +LHRISAIR+R ++GLTCRVGRAV G +++ DL++
Sbjct: 117 ELEYAEQAVGEFGKDNRAGIEGTLHRISAIRSRNGHIVGLTCRVGRAVTGQIDMVYDLLQ 176
Query: 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRM 275
G SIL +G PGVGKTT++REIAR+L+D+ KRVVIVDTSNEIGGDG++PH+ IG ARRM
Sbjct: 177 YGKSILFVGRPGVGKTTVMREIARVLSDELHKRVVIVDTSNEIGGDGNIPHAAIGGARRM 236
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
QVP +MQH VMIEAVENHMPE I++DEIGTE EA A +IA+RG+ L+GTAHG ++NI
Sbjct: 237 QVPEPSMQHRVMIEAVENHMPEVIVVDEIGTEAEAHACRSIAERGIMLIGTAHGQQLENI 296
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLD 395
+KNP+L L+GGIESVTLGD EA+ R QKTILERK PPTF +EM R + H+ D
Sbjct: 297 IKNPTLSDLIGGIESVTLGDAEARARNSQKTILERKAPPTFDFLIEMRDR-HYWLTHQTD 355
Query: 396 ATVDAILAGKLPLFEVRQMD 415
+VD +L G P EVR+ D
Sbjct: 356 KSVDMLLRGISPQVEVRKRD 375
>gi|242083132|ref|XP_002441991.1| hypothetical protein SORBIDRAFT_08g006480 [Sorghum bicolor]
gi|241942684|gb|EES15829.1| hypothetical protein SORBIDRAFT_08g006480 [Sorghum bicolor]
Length = 372
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 181/314 (57%), Positives = 231/314 (73%), Gaps = 3/314 (0%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF--PSGDWVISEQIVKHEDL 157
+L L++LP +R L L+EV++DLGR+P ARF SG + + + ++L
Sbjct: 56 DLSELLQILPRDLRDNLQNEPRKDQLLEVILDLGRRPEARFLGDSGGQYLRDSEISQKEL 115
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+ A VG+F DNR+GI+ +LHRISAIR+RK V+GLTCRVGRAV G +++ DL+
Sbjct: 116 EDAQKAVGEFGGDNRAGIEGTLHRISAIRSRKGMVVGLTCRVGRAVTGHVDMVHDLLNYK 175
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
SIL +G PGVGKTT++REIAR+LAD+ KRVVIVDTSNEIGGDGDVPH+ IG ARRMQV
Sbjct: 176 ESILFLGRPGVGKTTVMREIARVLADEFQKRVVIVDTSNEIGGDGDVPHAAIGGARRMQV 235
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
P +MQH VMIEAVENHMPE +I+DEIGTE EA A +IA+RGV L+GTAHG + NI+K
Sbjct: 236 PEPSMQHRVMIEAVENHMPEVVIVDEIGTEAEAQACRSIAERGVMLIGTAHGERLANIIK 295
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NP+L L+GG+E+VTLGD+EA+ R+ QK+ILERK PPTF +EM R V HR + +
Sbjct: 296 NPTLSDLIGGVETVTLGDDEARARRSQKSILERKAPPTFPFLIEMRER-HYWVTHRTERS 354
Query: 398 VDAILAGKLPLFEV 411
VD +L GK PL EV
Sbjct: 355 VDMLLHGKKPLVEV 368
>gi|255557835|ref|XP_002519947.1| Stage III sporulation protein AA, putative [Ricinus communis]
gi|223540993|gb|EEF42551.1| Stage III sporulation protein AA, putative [Ricinus communis]
Length = 412
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 180/324 (55%), Positives = 238/324 (73%), Gaps = 7/324 (2%)
Query: 96 GADI----ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPS--GDWVISE 149
GAD+ +L+ FL++LP + L L+EV++DLGR P AR+ G +
Sbjct: 70 GADVVVEDDLQEFLDILPPDLHDILLNDSNRAQLLEVILDLGRLPEARYLGEFGGRYLRN 129
Query: 150 QIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEI 209
V E+L+ A + VG+F DNR+GI+ +LHRISAIR+RK ++GLTCRVGRAV+G ++
Sbjct: 130 TEVTMEELEFAQNAVGEFGGDNRAGIEGTLHRISAIRSRKGLIVGLTCRVGRAVSGHVDM 189
Query: 210 ICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGI 269
+ DL+ G SIL +G PGVGKTT++REIAR+L+D KRVV+VDTSNEIGGDGD+PH+ +
Sbjct: 190 VHDLLHYGKSILFVGRPGVGKTTVMREIARVLSDKLDKRVVVVDTSNEIGGDGDIPHAAV 249
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHG 329
G ARRMQVP+ ++QH VMIEAVENHMPE II+DEIGTE EALA +IA+RG+ L+GTAHG
Sbjct: 250 GGARRMQVPDPSLQHKVMIEAVENHMPEVIIVDEIGTEAEALACRSIAERGIMLIGTAHG 309
Query: 330 MTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECR 389
++NI+KNP+L L+GGIE+V LGDEEA+ R+ QK+ILERKGPPTF +EM R
Sbjct: 310 ERLENIIKNPTLSNLIGGIETVILGDEEARARRSQKSILERKGPPTFYFLIEMRERHHW- 368
Query: 390 VHHRLDATVDAILAGKLPLFEVRQ 413
V H + +VD +L G+ P EVR+
Sbjct: 369 VTHLTEKSVDMLLRGENPSVEVRR 392
>gi|222616800|gb|EEE52932.1| hypothetical protein OsJ_35561 [Oryza sativa Japonica Group]
Length = 451
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 176/297 (59%), Positives = 226/297 (76%), Gaps = 3/297 (1%)
Query: 121 ELGDLIEVVMDLGRKPLARF--PSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRS 178
+L +L++V++DLGR+P ARF SG + + + ++L+ A VG+F DNR+GI+ +
Sbjct: 61 DLYELLQVILDLGRRPEARFLGDSGGQYLRDSEISQQELEEAQRAVGEFGGDNRAGIEGT 120
Query: 179 LHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
LHRISAIR+RK V+GLTCRVGRAV G +++ DL+ SIL +G PGVGKTT++REIA
Sbjct: 121 LHRISAIRSRKGMVVGLTCRVGRAVTGHVDMVRDLLNYKESILFLGRPGVGKTTVMREIA 180
Query: 239 RMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPET 298
R+LAD+ KRVVIVDTSNEIGGDGD+PH+ IG ARRMQV +MQH VMIEAVENHMPE
Sbjct: 181 RVLADEFQKRVVIVDTSNEIGGDGDIPHAAIGGARRMQVAQPSMQHRVMIEAVENHMPEV 240
Query: 299 IIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358
+I+DEIGTE EA A +IA+RGV L+GTAHG + NI+KNP+L L+GG+E+VTLGDEEA
Sbjct: 241 VIVDEIGTEAEAQACRSIAERGVMLIGTAHGEHLANIIKNPTLSDLIGGVETVTLGDEEA 300
Query: 359 KKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMD 415
+ R+ QK+ILERK PPTF +EM R V HR + +VD +L GK PL EVR+ D
Sbjct: 301 RARRSQKSILERKAPPTFPFLIEMRER-HYWVTHRTERSVDMLLHGKKPLVEVRKRD 356
>gi|145347639|ref|XP_001418270.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578499|gb|ABO96563.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 335
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 178/320 (55%), Positives = 233/320 (72%), Gaps = 3/320 (0%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPS--GDWVISEQIVKHEDL 157
+L +LP+ +R + H E L+EVV+DLGR P ARF G + E V +L
Sbjct: 10 DLTRLYGVLPADVRDAVKNHPERKHLLEVVLDLGRAPEARFLGEIGSMFLREAPVVEAEL 69
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
A VG+F DNR+GI+ +LHRIS IRNR+ ++G+TCRVGRAV G ++I D++ G
Sbjct: 70 VAAAKAVGEFGGDNRAGIEGTLHRISCIRNRRGHIVGMTCRVGRAVTGHIDMIRDILPSG 129
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
S+L +G PGVGKTT+IRE+AR+L+D+ KRVVI+DTSNEIGGDGD+PH IG ARRMQV
Sbjct: 130 ESVLFLGRPGVGKTTVIREMARVLSDELKKRVVIIDTSNEIGGDGDIPHPAIGGARRMQV 189
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
P+ +MQH VMIEAVENHMPE II+DEIGTE EALA TIA+RGVQL+GTAHG ++N++K
Sbjct: 190 PDPSMQHRVMIEAVENHMPEVIIVDEIGTEAEALACRTIAERGVQLIGTAHGQLLENLIK 249
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NP+L LVGG+++VTLGD+EA+ R QK+ILER+GPPTF +EM R V H + +
Sbjct: 250 NPTLTDLVGGVQTVTLGDDEARARGCQKSILERQGPPTFPILIEMHERN-MWVAHNVAES 308
Query: 398 VDAILAGKLPLFEVRQMDAE 417
VD +L+G P+ ++R D E
Sbjct: 309 VDEVLSGARPVVQLRTRDGE 328
>gi|292490546|ref|YP_003525985.1| single-stranded nucleic acid binding R3H domain-containing protein
[Nitrosococcus halophilus Nc4]
gi|291579141|gb|ADE13598.1| single-stranded nucleic acid binding R3H domain protein
[Nitrosococcus halophilus Nc4]
Length = 500
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 225/557 (40%), Positives = 314/557 (56%), Gaps = 67/557 (12%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L+ + +LP R R + L+E++MD+GR P ARF +S V DL+
Sbjct: 9 DLQQLIGILP-RSLRTVLQGLPQQHLLEIIMDVGRSPQARFSGQTVNLSADPVSPADLEQ 67
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++ VG+FS DNR+GI+ +LHRIS +RNR+ ++IGLT RVGRAV G+ + I DL+E G S
Sbjct: 68 VVASVGEFSADNRAGIEGTLHRISCLRNRRGKIIGLTLRVGRAVTGTIDSIRDLIERGAS 127
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++G PGVGKTT +REIAR+LAD+ KRV+I+DTSNEI GDGD+PH IG ARRMQVP+
Sbjct: 128 LLLLGRPGVGKTTRLREIARVLADEFGKRVIIIDTSNEIAGDGDIPHPAIGSARRMQVPH 187
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QH VMIEAVENHMPE II+DEIGT EA AA TIA+RGVQL+GTAHG T++N+V NP
Sbjct: 188 PERQHGVMIEAVENHMPEVIIVDEIGTGAEATAARTIAERGVQLIGTAHGNTLENLVMNP 247
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGG+++VTLGD+EA+ R QKTI ERK PPTF VE++ R VH VD
Sbjct: 248 TLADLVGGVQTVTLGDDEARLRGTQKTINERKAPPTFDAVVEIVDREAVIVHPDTAGAVD 307
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDEDY 459
+L G P +R+ + E + + TIN+ + S D
Sbjct: 308 KLLRGLDP-GGIRR--SPQGEVVFLPEEPPPQESPRQVSTINQTGWVRIHPYALSRD--- 361
Query: 460 ASNQFKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILA 519
+++R +R DL A+ + D+ D ILA
Sbjct: 362 --------TVERVIR----------------DLRLEARTVKRPDQADF---------ILA 388
Query: 520 SSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKSTSDI 579
S ++ +R + + QLP++V+K NT AQ+ + ++ + F + +P
Sbjct: 389 LRSR-AEDARLRRILQATQLPLYVVKKNTTAQIRRLLQNV-----FNILHGMPR------ 436
Query: 580 EIEDDAPKRKPTLEEID-ALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQL 638
+E+D A+ E AI+ V+ G V LLPR + + Q L ++L
Sbjct: 437 -------------DEVDAAVGEAEAAIKR-VMEEGVTVALLPRPASMRKLQHRLAARHRL 482
Query: 639 AAENSGTELNPRLQILP 655
AE+ G+E L I P
Sbjct: 483 TAESVGSEPQRHLIIHP 499
>gi|77166422|ref|YP_344947.1| single-stranded nucleic acid binding R3H [Nitrosococcus oceani ATCC
19707]
gi|254436235|ref|ZP_05049742.1| R3H domain protein [Nitrosococcus oceani AFC27]
gi|76884736|gb|ABA59417.1| Single-stranded nucleic acid binding R3H [Nitrosococcus oceani ATCC
19707]
gi|207089346|gb|EDZ66618.1| R3H domain protein [Nitrosococcus oceani AFC27]
Length = 496
Score = 338 bits (867), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 223/562 (39%), Positives = 319/562 (56%), Gaps = 75/562 (13%)
Query: 100 ELELFLELLPSRMR---RELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHED 156
+L+ L +LP +R + L H+ L+EV+MD+GR P ARF ++ V D
Sbjct: 5 DLQSLLAVLPPVLRAALQGLPSHQ----LLEVIMDVGRLPQARFSERAVNLATDPVSPAD 60
Query: 157 LKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEG 216
L+ ++ VG+FS DNR+GI+ +LHRI+ +RNR+ ++IGLT RVGRAVAG+ + I DL+E
Sbjct: 61 LERVVALVGEFSADNRAGIEGTLHRIACLRNRRGEIIGLTLRVGRAVAGTIDFIQDLIER 120
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
G ++L++G PGVGKTT +REIAR+LAD+ KRVVIVDTSNEIGGDGD+PH IG ARRMQ
Sbjct: 121 GDNLLLLGRPGVGKTTRLREIARVLADEFGKRVVIVDTSNEIGGDGDIPHPAIGSARRMQ 180
Query: 277 VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336
V + QH VMIEAVENHMPE II+DEIGT EA AA TIA+RGVQL+GTAHG T++N+V
Sbjct: 181 VSHPEQQHGVMIEAVENHMPEVIIVDEIGTTSEATAARTIAERGVQLIGTAHGNTLENLV 240
Query: 337 KNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDA 396
NP+L LVGG+++VTLGD+EA+ R+ QKTI ERK PTF VE+++R VH
Sbjct: 241 MNPTLADLVGGVQAVTLGDDEARLRRTQKTIRERKALPTFDAVVEIVNREVMIVHPDTAG 300
Query: 397 TVDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSED 456
VD +L G P R E K +P+ PE ++ E+++ + +
Sbjct: 301 AVDKLLRGLGPGGIRRSPQGEEILSPKKSPL-----PESTKPVSIENQTGLIRIHPYALS 355
Query: 457 EDYASNQFKNRSIK-RSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTAD 515
D ++ ++ R+V+ P AD
Sbjct: 356 RDTVERVIRDLRLEARTVKNPE-----------------------------------QAD 380
Query: 516 AILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKS 575
I+A S ++ +R + + +LP++V+K NT AQ+ + ++ +L + + +P
Sbjct: 381 FIIALRSR-AEDARLRRLLQATRLPLYVVKKNTTAQIRRLLQNVLNI-----LHGVPR-- 432
Query: 576 TSDIEIEDDAPKRKPTLEEID-ALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVE 634
+E+D A+ E AI+ ++ G A L PR + I Q L
Sbjct: 433 -----------------DEVDTAVSEAEAAIKQVMEEGVTAA-LQPRSAAIRELQHRLAV 474
Query: 635 SYQLAAENSGTELNPRLQILPL 656
+ L AE+ G+E L I P+
Sbjct: 475 RHHLLAESVGSEPQRHLIIHPV 496
>gi|383788423|ref|YP_005472992.1| hypothetical protein CSE_07630 [Caldisericum exile AZM16c01]
gi|381364060|dbj|BAL80889.1| hypothetical protein CSE_07630 [Caldisericum exile AZM16c01]
Length = 496
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 170/318 (53%), Positives = 230/318 (72%), Gaps = 2/318 (0%)
Query: 97 ADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHED 156
+ E + FLE+LP ++ +L + +LIEVV+DLGRKP ARF + + E V ++
Sbjct: 6 TEFERQAFLEILPKNIKEKLEDIGDFDNLIEVVLDLGRKPEARFTNRTVYLREDPVTKDE 65
Query: 157 LKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEG 216
+ + K+G F D+R+GI+++LHRIS + NR+ +VIGLTCRVGRAV G+ +I+ D+V
Sbjct: 66 INETLQKIGVFDRDHRAGIEKTLHRISGVFNRRGEVIGLTCRVGRAVYGTVDILKDIVTS 125
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
++L++G PGVGKTTL+RE AR+L+ + KRV+++DTSNEIGGDGD+PH GIG ARRMQ
Sbjct: 126 DRNLLLLGRPGVGKTTLLREAARVLSTELGKRVIVIDTSNEIGGDGDIPHPGIGNARRMQ 185
Query: 277 VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336
VP Q VMIEAVENH PE IIIDEIG EA A TIA+RGV+L+ TAHG +I+N++
Sbjct: 186 VPFGTAQEEVMIEAVENHFPEVIIIDEIGRAEEAKACRTIAERGVRLIATAHGTSIENLL 245
Query: 337 KNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDA 396
NP+LQ L+GGI SVTL DEEA +R QKT+LERK PPTF +E+ R ++H +
Sbjct: 246 VNPTLQDLIGGITSVTLSDEEAARRGTQKTVLERKSPPTFDTLIEIRERGVFAIYHDVAE 305
Query: 397 TVDAILAGKLPLF-EVRQ 413
TVDA+L G P+F E+R+
Sbjct: 306 TVDALLRG-FPVFPEIRK 322
>gi|456062084|ref|YP_007476226.1| Ycf45 (chloroplast) [Pavlova lutheri]
gi|449327271|gb|AGE93827.1| Ycf45 (chloroplast) [Pavlova lutheri]
Length = 369
Score = 335 bits (859), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 168/303 (55%), Positives = 222/303 (73%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+ E L++LP ++ L ++ LIEVV+DLGR P ARF +SE ++ +D+
Sbjct: 6 DFENLLKVLPQFVQNSLKKDPKVDSLIEVVLDLGRMPEARFLDRPIFLSEHLIVWKDIDF 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+V FS DNR+GI+R+LHRIS+IRNR+ +IGLTCRVGRAV G II DL+E S
Sbjct: 66 LTKRVSKFSADNRAGIERTLHRISSIRNRENVIIGLTCRVGRAVLGVISIIRDLIEEEES 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT IREI+R+L+D+ KRV+I+DTSNEI GDGD+PH IG ARRMQV +
Sbjct: 126 ILILGKPGVGKTTAIREISRILSDEMGKRVIIIDTSNEIAGDGDIPHPAIGSARRMQVSH 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+QH +MIEAVENHMP+ IIIDEI TELEALAA TIA+RGV+L+GTAHG ++++++KNP
Sbjct: 186 PELQHHIMIEAVENHMPQVIIIDEISTELEALAAQTIAERGVKLIGTAHGNSLESLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI+ VTLGDEEA+ R QK++LERK P F +E+ + VH ++ VD
Sbjct: 246 TLSDLIGGIQYVTLGDEEARIRGTQKSVLERKSRPAFKIGLEIGNSKAWAVHPNIEKAVD 305
Query: 400 AIL 402
IL
Sbjct: 306 QIL 308
>gi|300115498|ref|YP_003762073.1| single-stranded nucleic acid-binding R3H domain-containing protein
[Nitrosococcus watsonii C-113]
gi|299541435|gb|ADJ29752.1| single-stranded nucleic acid binding R3H domain protein
[Nitrosococcus watsonii C-113]
Length = 496
Score = 334 bits (857), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 219/562 (38%), Positives = 318/562 (56%), Gaps = 75/562 (13%)
Query: 100 ELELFLELLPSRMR---RELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHED 156
+L+ L +LP +R + L H+ L+EV+MD+GR P ARF ++ V D
Sbjct: 5 DLQSLLAVLPPVLRAALQGLPTHQ----LLEVIMDVGRPPQARFSGRAVNLTTDPVSPAD 60
Query: 157 LKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEG 216
L+ ++ VG+FS DNR+GI+ +LHRI+ +RNR+ ++IGLT RVGRA+AG+ + I DL+E
Sbjct: 61 LERVVALVGEFSADNRAGIEGTLHRIACLRNRRGEIIGLTLRVGRAIAGTIDFIQDLIER 120
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
++L++G PGVGKTT +REIAR+LAD+ KRVVIVDTSNEIGGDGD+PH IG ARRMQ
Sbjct: 121 EVNLLLLGRPGVGKTTRLREIARVLADEFGKRVVIVDTSNEIGGDGDIPHPAIGSARRMQ 180
Query: 277 VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336
V + QH VMIEAVENHMPE I++DEIGT EA+AA TIA+RGVQL+GTAHG T++N+V
Sbjct: 181 VAHPEQQHGVMIEAVENHMPEVIVVDEIGTTSEAMAARTIAERGVQLIGTAHGNTLENLV 240
Query: 337 KNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDA 396
NP+L L+GG++ VTLGD+EA+ R+ QKTI ERK PTF VE+++R VH +
Sbjct: 241 MNPTLADLIGGVQVVTLGDDEARLRRTQKTIRERKALPTFNAVVEIVNREIMMVHPDTAS 300
Query: 397 TVDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSED 456
VD +L G P R E + +P+ PE ++ E+++ + +
Sbjct: 301 AVDKLLRGLDPGGIRRSPQGEEILSPEKSPL-----PESAKPVSVENQAGLIRIHPYALS 355
Query: 457 EDYASNQFKNRSIK-RSVRKPSPPVCVYTYRILEADLLQVAKVMGLEDEIDVTDDIGTAD 515
D ++ ++ R+V+ P AD
Sbjct: 356 RDTVERVIRDLRLEARAVKNPE-----------------------------------QAD 380
Query: 516 AILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGTISKLPNKS 575
I+A S ++ +R + + ++P++V+K NT AQ+ + ++ +L
Sbjct: 381 FIIALRSR-AEDARLRRLLQVTRVPLYVVKKNTTAQIRRLLQNVLN-------------- 425
Query: 576 TSDIEIEDDAPKRKPTLEEID-ALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVE 634
I PK +E+D A+ E AI+ ++ G A L PR + I Q L
Sbjct: 426 -----ILHGVPK-----DEVDIAVSEAEAAIKRVMKEGVTAT-LQPRTAAIRELQHRLAV 474
Query: 635 SYQLAAENSGTELNPRLQILPL 656
+ L AE+ G+E L I P+
Sbjct: 475 RHHLLAESVGSEPQRHLIIYPV 496
>gi|310817928|ref|YP_003950286.1| single-stranded nucleic acid binding r3h [Stigmatella aurantiaca
DW4/3-1]
gi|309391000|gb|ADO68459.1| Single-stranded nucleic acid binding R3H [Stigmatella aurantiaca
DW4/3-1]
Length = 544
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 188/362 (51%), Positives = 252/362 (69%), Gaps = 11/362 (3%)
Query: 77 PPRNGSV--SDSPNSAST-SRSGADIELELFLELLPSRMRRELCMHREL--GDLIEVVMD 131
PP G + + N A T +R+ D + L + +LPS ++ + R L +++EVVMD
Sbjct: 3 PPWAGYILPGQAENHAMTQTRAEPDDDFLLLVAVLPSSLQAAV---RGLTPAEVLEVVMD 59
Query: 132 LGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQ 191
LGR P AR G ++E ++ DL+H +++VG +DNR+GI+R+LHR+SAIRNRK +
Sbjct: 60 LGRPPEARLVHGSVRLTEALIVQADLEHVLAQVGPPGEDNRAGIERTLHRVSAIRNRKGR 119
Query: 192 VIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVI 251
V+GLT RVGRAV G+ +++ DL+ G ++L++G PGVGKTT +RE+AR+LADD KRV++
Sbjct: 120 VVGLTLRVGRAVFGTIDMLKDLIGTGRNVLLLGRPGVGKTTKLREVARVLADDLRKRVMV 179
Query: 252 VDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEAL 311
VDTSNEIGGDGD+PH GIG ARRMQV + QH VMIEAVENHMPE II+DEIGT EA
Sbjct: 180 VDTSNEIGGDGDIPHPGIGGARRMQVSRPDRQHDVMIEAVENHMPEAIIVDEIGTSAEAA 239
Query: 312 AASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERK 371
AA TIA+RGVQLV TAHG T++N+V NP+L LVGG+ +VTL DEEA++R QKT+ ERK
Sbjct: 240 AARTIAERGVQLVATAHGNTLENLVLNPTLSDLVGGVHTVTLSDEEARRRNTQKTVSERK 299
Query: 372 GPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGS 431
PPTF V+M+ R E VH VD +LAG+ E R + H ++V P+ +
Sbjct: 300 APPTFDLVVQMVGRDEVLVHRDTAEAVDRLLAGQEVGGERRLL---HEGEVRVEPVPQAV 356
Query: 432 YP 433
P
Sbjct: 357 AP 358
>gi|442324641|ref|YP_007364662.1| hypothetical protein MYSTI_07706 [Myxococcus stipitatus DSM 14675]
gi|441492283|gb|AGC48978.1| hypothetical protein MYSTI_07706 [Myxococcus stipitatus DSM 14675]
Length = 604
Score = 331 bits (848), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 188/353 (53%), Positives = 248/353 (70%), Gaps = 8/353 (2%)
Query: 88 NSASTSRSGADIELELFLELLPSRMRRELCMHRELG--DLIEVVMDLGRKPLARFPSGDW 145
S+ + AD + L++E+LP +R + R L ++EVV+DLGR P AR
Sbjct: 2 TSSRVDAAAAD-DFRLWVEVLPEELR---AVVRALAPEQVLEVVLDLGRVPEARLVDRVV 57
Query: 146 VISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAG 205
+ E V EDL +++VG +DNR+GI+R+LHR+SAIRNR+ QV+GLT RVGRAV G
Sbjct: 58 TLRESPVGPEDLAQVMAQVGPPGEDNRAGIERTLHRVSAIRNRRGQVVGLTLRVGRAVYG 117
Query: 206 SAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
+ +++ DL+ G ++L++G PGVGKTT +RE+AR+LADD KRV++VDTSNEIGGDGDVP
Sbjct: 118 TIDMLKDLIGSGRNVLLLGRPGVGKTTKLREVARVLADDLGKRVMVVDTSNEIGGDGDVP 177
Query: 266 HSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVG 325
H GIG ARRMQV + QH VMIEAVENHMPE II+DEIGT EA AA TIA+RGVQLV
Sbjct: 178 HPGIGGARRMQVSRPDRQHDVMIEAVENHMPEAIIVDEIGTSAEAAAARTIAERGVQLVA 237
Query: 326 TAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISR 385
TAHG T++N+V NP+L LVGG+ +VTL D+EA++R+ QKT+ ERK PPTF VEM++R
Sbjct: 238 TAHGNTLENLVLNPTLSDLVGGVHTVTLSDDEARRRRTQKTVSERKAPPTFDIVVEMVNR 297
Query: 386 TECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKVTPI-LRGSYPEESE 437
E RVH VD +LAGK E R D + ++V P+ +R + P +E
Sbjct: 298 DEVRVHADTAEAVDRLLAGKEVGGERRWRDPASGQ-VEVAPVPVRSTRPVATE 349
>gi|242624308|ref|YP_003002226.1| conserved hypothetical plastid protein Ycf45 [Aureoumbra
lagunensis]
gi|239997416|gb|ACS36938.1| conserved hypothetical plastid protein Ycf45 [Aureoumbra
lagunensis]
Length = 340
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 161/315 (51%), Positives = 229/315 (72%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
++ +++ P +++ L H L +LIE++ D+G+ P RF S V+S +++ +D+ +
Sbjct: 7 DVAFLIDIFPYFVQKPLKNHPLLDELIEIIFDIGKCPEVRFSSKIEVLSYRVISKQDMNY 66
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++K+ +F++ NR+GI R+LHRIS +RNR Q+IGLTCRVGR+V G I D++ S
Sbjct: 67 CLTKISNFNEKNRAGIKRTLHRISCLRNRDDQIIGLTCRVGRSVIGLTNKIRDILLLNRS 126
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT+IREIAR+L+++ KRVVIVDTSNEI GD DVPH +GRARR+QV N
Sbjct: 127 ILILGRPGVGKTTIIREIARILSNELEKRVVIVDTSNEIAGDNDVPHVAVGRARRLQVKN 186
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
N+QH +IEAVENHMPE IIIDEIGTE+EAL+A TIA+RGVQL+ T HG ++N++KNP
Sbjct: 187 SNLQHQSLIEAVENHMPEVIIIDEIGTEIEALSARTIAERGVQLIATTHGNHLENLIKNP 246
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
L L+GGI+SVTL D+EAK R +K+ILERK TF +E+ + ++ ++ +VD
Sbjct: 247 ILMDLIGGIQSVTLSDQEAKNRHTKKSILERKFAATFNIIIEINNYNSWTIYENVEESVD 306
Query: 400 AILAGKLPLFEVRQM 414
+L G+ P +VR M
Sbjct: 307 FLLKGQEPNKQVRTM 321
>gi|303287638|ref|XP_003063108.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455744|gb|EEH53047.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 766
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 187/440 (42%), Positives = 249/440 (56%), Gaps = 98/440 (22%)
Query: 74 DWAPPRNGS-VSDSPNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDL 132
D APP S ++ SP+ ++ + + ELE + LLP + L H + +L+EVV+DL
Sbjct: 105 DDAPPTTASMIAASPSPSALASATDPAELEQLINLLPPAIASALLAHAQKLELVEVVLDL 164
Query: 133 GRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAI------- 185
GR PLARF D +S+ + H+D+ A+S VGD DNR+GIDR+LHRI +
Sbjct: 165 GRVPLARFGGADVALSDAPLTHDDIARALSNVGDVGADNRAGIDRTLHRIRRVLLTLVLI 224
Query: 186 --------------------------------------RNRKMQVIGLTCRVGRAVAGSA 207
RNR ++G+TCRVGRA+ G A
Sbjct: 225 RLRPRGARRSLRTFAGVSLRARHGFDPDAPRRLSTPVMRNRAGVIVGMTCRVGRAIEGGA 284
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLA------------------------- 242
++I DL+ G S+L++G PGVGKTT IREIAR+L+
Sbjct: 285 DMIRDLLVSGRSVLLLGRPGVGKTTAIREIARVLSGASYLTLDFSRRLSPPRVPRFQSRH 344
Query: 243 ---------------------------DDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRM 275
DD +RVV+VDTSNEIGGDGDVPH GIG ARRM
Sbjct: 345 TSTPFNSASDAFQLHPFNVRSYGQLPSDDCGRRVVVVDTSNEIGGDGDVPHPGIGGARRM 404
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
QV + QH+ +IEAV+NH P+ +++DEIGTELE AA TI+QRGVQ++ TAHG T++N+
Sbjct: 405 QVTEPSEQHATLIEAVQNHTPQVVVVDEIGTELECAAARTISQRGVQMIATAHGHTLENV 464
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLD 395
+KNPSL LVGG+ SVTLGD+EA+KR+ QKT LER+GPPTF AVE+ + VH +
Sbjct: 465 LKNPSLNDLVGGVVSVTLGDDEARKRRAQKTTLEREGPPTFGAAVEIRETGKWVVHLDVG 524
Query: 396 ATVDAILAGKLPLFEVRQMD 415
VD +LAG P E+R +D
Sbjct: 525 VAVDTLLAGYAPPVELRSVD 544
>gi|383459841|ref|YP_005373830.1| hypothetical protein COCOR_07880 [Corallococcus coralloides DSM
2259]
gi|380731791|gb|AFE07793.1| hypothetical protein COCOR_07880 [Corallococcus coralloides DSM
2259]
Length = 564
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 173/308 (56%), Positives = 226/308 (73%), Gaps = 1/308 (0%)
Query: 97 ADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHED 156
A+ + L + +LP ++ E +L+EVVMDLGR P AR G +SE V E
Sbjct: 7 ANNDFALLVAVLPPSLQ-EAVRQLPEAELLEVVMDLGRPPEARLVHGVARLSEAPVTQEA 65
Query: 157 LKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEG 216
L+ ++ VG+ DNR+GI+R+LHR+SAIRNR+ +V+GLT RVGRA+ G+ +++ DLVE
Sbjct: 66 LQAVLAHVGEVGGDNRAGIERTLHRVSAIRNRQGRVVGLTLRVGRAIQGTIDMLRDLVES 125
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
G ++L++G PGVGKTT +RE+AR+LAD KRV++VDTSNEIGGDGD+PH GIG ARRMQ
Sbjct: 126 GRNLLLLGRPGVGKTTKLREVARVLADALGKRVMVVDTSNEIGGDGDIPHPGIGGARRMQ 185
Query: 277 VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336
V + QH VMIEAVENHMPE I++DEIGT EA AA TIA+RGVQLV TAHG T++N+V
Sbjct: 186 VSRPDRQHDVMIEAVENHMPEAIVVDEIGTAAEAAAARTIAERGVQLVATAHGNTLENLV 245
Query: 337 KNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDA 396
NP+L LVGG+++VTL D+EA++R QKT+ ERKG PTF VEM++R E RVH
Sbjct: 246 LNPTLSDLVGGVQTVTLSDDEARRRGTQKTVTERKGTPTFDIVVEMVNRDEVRVHRDTGG 305
Query: 397 TVDAILAG 404
VD +L G
Sbjct: 306 AVDRLLTG 313
>gi|88811456|ref|ZP_01126711.1| Single-stranded nucleic acid binding R3H [Nitrococcus mobilis
Nb-231]
gi|88791345|gb|EAR22457.1| Single-stranded nucleic acid binding R3H [Nitrococcus mobilis
Nb-231]
Length = 513
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 169/305 (55%), Positives = 222/305 (72%), Gaps = 1/305 (0%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+LE L +LP ++ + +L+E+V+DLGR+P AR G ++ V DL+
Sbjct: 9 DLERLLRILPQPLQSAITALPS-SELLEIVLDLGRRPQARLIQGALDLAGTPVTRLDLER 67
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
S VG F+ DNR+GI+ +LHR++AIRNR V+GLT RVGRAV G+ + I DL+ GGS
Sbjct: 68 ITSTVGPFTADNRAGIEGTLHRVAAIRNRTGTVVGLTLRVGRAVFGTIDAIHDLIAQGGS 127
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L++GPPG+GKTT +REIAR+LAD+ +RV+++DTSNEI GDGD+PH GIG ARRMQV +
Sbjct: 128 LLLLGPPGIGKTTRLREIARVLADECARRVIVIDTSNEIAGDGDIPHPGIGCARRMQVAH 187
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+ QH VMIEAVENHMPE II+DEIGT EA AA TIA+RGVQL+GTAHG T++N+V NP
Sbjct: 188 PDRQHRVMIEAVENHMPEVIIVDEIGTSAEAAAARTIAERGVQLIGTAHGTTLENLVLNP 247
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L LVGG+++VTL DEEA+ R QKT+ ER GPPTF VE++ R +H VD
Sbjct: 248 TLADLVGGVQTVTLSDEEARARGTQKTVSERCGPPTFDAVVEIVDRERLLIHRDAGRAVD 307
Query: 400 AILAG 404
AIL+G
Sbjct: 308 AILSG 312
>gi|206896224|ref|YP_002246822.1| R3H domain-containing protein [Coprothermobacter proteolyticus DSM
5265]
gi|206738841|gb|ACI17919.1| R3H domain protein [Coprothermobacter proteolyticus DSM 5265]
Length = 515
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 157/307 (51%), Positives = 215/307 (70%)
Query: 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHA 160
L+ L +LP + +L M+ L DL+++V+DL R + RF S V +V +D+++
Sbjct: 10 LDEVLGILPPWIAEKLRMNPMLSDLVDIVLDLKRPVVIRFSSSQEVWESDLVSEDDIQYV 69
Query: 161 ISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI 220
+ +G F DNR+G++ +LHRIS IRNR+ ++IGL+ R+GRA+ G + + S+
Sbjct: 70 VQHIGTFGKDNRAGLEGTLHRISCIRNRQGRIIGLSIRIGRAIYGVVDPLTPYFTQEKSV 129
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNV 280
L++G PGVGKTTL+RE+AR+L+ D+ KRV++VDTSNEI GDGDVPH IG ARRMQVP
Sbjct: 130 LLMGKPGVGKTTLLREVARLLSVDYQKRVIVVDTSNEIAGDGDVPHPAIGLARRMQVPVP 189
Query: 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPS 340
QH VMIEAVENHMPE II+DEIG + E AA TIA+RGVQL+ TAHG T++NI+ NP+
Sbjct: 190 EQQHDVMIEAVENHMPEVIIVDEIGRKEEVDAARTIAERGVQLIATAHGNTLENILVNPT 249
Query: 341 LQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDA 400
L LVGG++ VTL DEEA +R QKTILERK PTF +E+ +R +H ++ VD+
Sbjct: 250 LSDLVGGVQVVTLSDEEAHRRGTQKTILERKTSPTFDILIEIRARGVYAIHEDVERAVDS 309
Query: 401 ILAGKLP 407
+L G P
Sbjct: 310 LLRGIPP 316
>gi|403225170|gb|AFR24782.1| conserved hypothetical plastid protein Ycf45 [uncultured
Pelagomonas]
Length = 330
Score = 311 bits (796), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 148/281 (52%), Positives = 209/281 (74%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISA 184
L+E+V D+G+ P ARF SG +++ +I+ +D+ + + ++ F+D NR+GI+++LHRIS
Sbjct: 31 LMEIVFDIGKYPEARFTSGVVILAPRIICRQDMHYVLKRITAFNDKNRAGINKTLHRISC 90
Query: 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADD 244
++NR+ Q+IGLTCRVGR++ GS I D++ SIL++G PG GKTT+IREIAR+ +++
Sbjct: 91 LKNREDQIIGLTCRVGRSIIGSTNKIRDILLHDKSILILGKPGSGKTTIIREIARIFSNE 150
Query: 245 HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
KRVVIVDTSNEI GD DVPH +GRARR+QV ++QH V+IEAVENHMPE IIIDEI
Sbjct: 151 LEKRVVIVDTSNEIAGDNDVPHVAVGRARRLQVKKFDLQHQVLIEAVENHMPEVIIIDEI 210
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
TE E L+A TIA+RGVQL+ TAHG ++ N+VKNP L L+GGI+SVTL D+ AK R +
Sbjct: 211 STETETLSARTIAERGVQLIATAHGNSLVNLVKNPILVNLIGGIQSVTLSDQSAKLRNTK 270
Query: 365 KTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGK 405
K++LER+ TF +E+ S ++ +++ VD IL G+
Sbjct: 271 KSVLERQFAATFDLIIEISSSDSWIIYDKVEEAVDLILNGE 311
>gi|11465517|ref|NP_045092.1| hypothetical protein CycaCp075 [Cyanidium caldarium]
gi|14424118|sp|O19920.1|YCF45_CYACA RecName: Full=Uncharacterized protein ycf45
gi|2465740|gb|AAB82669.1| unknown [Cyanidium caldarium]
Length = 335
Score = 295 bits (755), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 150/316 (47%), Positives = 218/316 (68%), Gaps = 2/316 (0%)
Query: 100 ELELFLELLPSRMRRELCMH-RELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLK 158
+L FL ++P + + L H R+ G L E+V+D GR+ R+ ++ + + + L
Sbjct: 6 DLRHFLPVVPRFVYKSLKKHPRKFG-LTEIVLDNGRRAEGRWREKTENLTHKKITKKHLL 64
Query: 159 HAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGG 218
I K+G F++DNR+GI ++LHRIS I+NR ++GLT R+GR G II DL+E
Sbjct: 65 RCIKKIGIFNEDNRAGIYQTLHRISCIKNRYGNIVGLTYRIGREFIGIGPIIRDLIESNQ 124
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
S L+IG PG+GKT+ IREI+R+L+++ MKRV+IVD++NEI G+G PH G+ARRM+V
Sbjct: 125 STLLIGRPGIGKTSFIREISRILSNEIMKRVIIVDSANEISGEGCCPHISTGKARRMEVQ 184
Query: 279 NVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKN 338
++N QH VMIEA+ENH PE IIIDEIGTE E+ AA +I+QRG++L+G+AH + N+ KN
Sbjct: 185 SINSQHEVMIEAIENHTPEIIIIDEIGTEYESQAAISISQRGIRLIGSAHSSDLFNLAKN 244
Query: 339 PSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATV 398
P+L LVGGIESVTL D +A RK +KTILERKG F +E+ + +V+ ++ ++
Sbjct: 245 PTLCKLVGGIESVTLSDTQAILRKTKKTILERKGCSCFNATIEINKKRTVKVYTSVEQSI 304
Query: 399 DAILAGKLPLFEVRQM 414
DAIL G++ ++R M
Sbjct: 305 DAILEGRVNNSQIRSM 320
>gi|290995997|ref|XP_002680569.1| predicted protein [Naegleria gruberi]
gi|284094190|gb|EFC47825.1| predicted protein [Naegleria gruberi]
Length = 303
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/283 (48%), Positives = 189/283 (66%), Gaps = 9/283 (3%)
Query: 104 FLELLPSRMRRELCM--HRELGDLIEVVMDLGRKPLARFPSGDWVISEQ--IVKHEDLKH 159
FL+L P +++ +L ++ +LIEV MD GR F S IVK E++
Sbjct: 26 FLDLFPKKIQEQLSTISGEDVNNLIEVAMDKGRPYELFFYHKKEPYSNPTFIVKQEEIDE 85
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++K+ F DNR+G+D SLHRISA+ NR+ ++IGLT RVGRAV G A++ DL+E G S
Sbjct: 86 IVNKL-SFGTDNRAGMDGSLHRISAMLNREAKIIGLTLRVGRAVMGRAKVFSDLIEEGKS 144
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PG GKTT IR+ A+ L++ +RVV+VDTS EIGG GD+PH IG+ARRMQV +
Sbjct: 145 ILLLGKPGAGKTTFIRDFAKTLSES--RRVVVVDTSCEIGGFGDIPHVAIGKARRMQVAD 202
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+ Q VMI+AV+NH PE I+IDEIGT+ E A TI+QRGV L G+AHG + +I+KNP
Sbjct: 203 IRRQQEVMIQAVQNHTPEVIVIDEIGTKDEVSTARTISQRGVILCGSAHG-DMKSILKNP 261
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEM 382
L L+GG+ESV +GD A R +K L+ K P F +++
Sbjct: 262 ILCDLLGGVESVIMGDRNA-SRDGEKMRLQLKADPVFDVVIQL 303
>gi|301109912|ref|XP_002904036.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262096162|gb|EEY54214.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 392
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/371 (40%), Positives = 214/371 (57%), Gaps = 31/371 (8%)
Query: 72 PSDWAPPRNGSVSDSPNSASTSRSGA----------DIELELFLELLPSRMRRELCMHRE 121
P+ W P + S ++S GA EL+ L+LLP R + RE
Sbjct: 18 PAIWFDPVADNRPRSLEYLTSSAGGASPIELPNLELQCELDSLLKLLPGSYRDAV---RE 74
Query: 122 LGD----LIEVVMDLGRKPLARFPSGDWVISEQ---IVKHEDLKHAISKVGD---FSDDN 171
+ + L+++ +D+GR P A V+ + +V E + + +G +DN
Sbjct: 75 VDNYHFRLVDICIDVGRAPFAYTGKKQRVLLTKDGSVVSKETIDEVVKNLGGEMRIGNDN 134
Query: 172 RSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLV----EGGGSILVIGPPG 227
R+GIDR HRIS +R++ +V GLT RVGRA+ +A ++ DL+ S+LV+G PG
Sbjct: 135 RAGIDRQRHRISVMRSKTDEVYGLTMRVGRALRNAACVLTDLLLSNKHANKSVLVLGHPG 194
Query: 228 VGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVM 287
GKTTLIR++AR +++ M+ V I+DTSNEIGGDG VPH +G ARRM VP++ Q VM
Sbjct: 195 SGKTTLIRDVARCVSET-MENVCIIDTSNEIGGDGLVPHECVGWARRMMVPSLEAQAGVM 253
Query: 288 IEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGG 347
+E V+NH ET+I+DEIG + E LAAST+ QRG +L+ +AHG ++KNP L+ LVGG
Sbjct: 254 VECVQNHTVETLIVDEIGRKAEVLAASTVRQRGPRLIASAHG-DFRALIKNPDLKGLVGG 312
Query: 348 IESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEM--ISRTECRVHHRLDATVDAILAGK 405
+ VT+GD+EAK K +R G P F VE+ + R CR+ + VD +L G
Sbjct: 313 SQQVTIGDKEAKSLNKGKLQTQRAGNPIFDVIVELDHVVRGRCRIIWDVATAVDNVLEGN 372
Query: 406 LPLFEVRQMDA 416
FE R+ DA
Sbjct: 373 DYAFETRRWDA 383
>gi|440792694|gb|ELR13902.1| sporulation proteinrelated, putative [Acanthamoeba castellanii str.
Neff]
Length = 786
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 145/319 (45%), Positives = 194/319 (60%), Gaps = 32/319 (10%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+L L L+ LP +R L L L+E+V+DLGR +ARF SG
Sbjct: 430 DLGLILDALPEHLRDALLADGRLHGLVEIVLDLGRPLMARF-SGP--------------- 473
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGG- 218
+ +V + S R G ++ NR V+GLT RVG+ + G ++ D++
Sbjct: 474 GLPRVAEIS--GRGGEGENV-------NRSGDVVGLTIRVGKTLRGLVTMVADVLARAAP 524
Query: 219 ---SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRM 275
SIL++G PG+GKT++IRE+AR LA + V+IVDTSNEI GDGD+PH IG ARRM
Sbjct: 525 CKASILLLGAPGMGKTSVIREMARELAREW--SVMIVDTSNEIAGDGDIPHPAIGAARRM 582
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
QVP + QH MIEAV+NH P+ II+DEIGT EA A TIA+RGV LV TAHG+T+ ++
Sbjct: 583 QVPQASEQHKRMIEAVQNHTPDVIIVDEIGTAEEAKACCTIARRGVMLVATAHGVTLSDV 642
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKR-KVQKTILERKGPPTFTCAVEMISRTECRVHHRL 394
V NPSL +VGG+E+V L D A R QKT+ E +GP F A+E+ SR+E VH +
Sbjct: 643 VDNPSLNSVVGGVEAVILSDAAALARGSAQKTVRESRGPSAFGLAIELRSRSEWVVHDDV 702
Query: 395 DATVDAILAGKLPLFEVRQ 413
A V+ +LAGK EVR+
Sbjct: 703 RANVNRLLAGKPMAVEVRR 721
>gi|291000444|ref|XP_002682789.1| predicted protein [Naegleria gruberi]
gi|284096417|gb|EFC50045.1| predicted protein [Naegleria gruberi]
Length = 282
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 133/255 (52%), Positives = 175/255 (68%), Gaps = 10/255 (3%)
Query: 104 FLELLPSRMRRELCM--HRELGDLIEVVMDLGRKPLARF---PSGDWVISEQIVKHEDLK 158
FLEL P +++ +L ++ +LIEV MD GR P F + + IVK ED+
Sbjct: 33 FLELFPKKIQEQLSTISGEDVMNLIEVAMDKGR-PYELFYYHKKESHIDNSFIVKQEDID 91
Query: 159 HAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGG 218
+SK+ F DNR+GID +LHRISA+ NR ++IGLT RVGRAV G +++ DL+E G
Sbjct: 92 EVVSKL-SFGTDNRAGIDGALHRISAMLNRSEKIIGLTLRVGRAVMGRSKVFSDLIEQGK 150
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
SIL++G PG GKTT IR+ A+ L++ +RVV+VDTS EIGG GDVPH IG+ARRMQV
Sbjct: 151 SILLLGKPGSGKTTFIRDFAKTLSES--RRVVVVDTSCEIGGFGDVPHVAIGKARRMQVA 208
Query: 279 NVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKN 338
++ Q VMI+AV+NH PE I+IDEIGT E A TIAQRGV L G+AHG + +I+KN
Sbjct: 209 DIRRQQEVMIQAVQNHTPEVIVIDEIGTRDEVSTARTIAQRGVVLCGSAHG-DMKSILKN 267
Query: 339 PSLQILVGGIESVTL 353
P L L+GG+ESV +
Sbjct: 268 PILCDLLGGVESVIM 282
>gi|440794844|gb|ELR15989.1| R3H domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 441
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 122/265 (46%), Positives = 177/265 (66%), Gaps = 17/265 (6%)
Query: 138 ARFPSGDWVISEQIVKHEDLKHAISK-VGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLT 196
A+ P W +I + +L +++ VG DNR+G+ ++LHRIS ++N+ Q +G+T
Sbjct: 163 AQAPPPRWGEEWEITRVHELTRTVNEMVGWGGLDNRAGLSKTLHRISRLQNQAGQAVGVT 222
Query: 197 CRVGRAVAGSAEIICDLV----EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252
RVG+ ++G ++ D++ E SIL++G PG+GKT+++RE+AR LA++ V+IV
Sbjct: 223 IRVGKTISGLVPMVADVLQRAAERKASILLLGSPGMGKTSVLREMARELANE--WSVMIV 280
Query: 253 DTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE--------- 303
DTSNEI G GD+PH+ IG ARRMQV + QH MIEAV+NH P+ II+DE
Sbjct: 281 DTSNEIAGAGDIPHTAIGEARRMQVLPGSGQHKCMIEAVQNHTPDIIIVDEVCPISEWPC 340
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKV 363
IGT+ EA A TIA+RGV LV TAHG+T+ ++V NP L +VGG++SVTLGD+ ++R
Sbjct: 341 IGTKSEAAACCTIARRGVMLVATAHGLTLQDVVDNPGLNSVVGGVQSVTLGDDAVRERGA 400
Query: 364 Q-KTILERKGPPTFTCAVEMISRTE 387
+ KT+ E KGP F A+E+ SR E
Sbjct: 401 KHKTVRECKGPSAFAVAIELRSRRE 425
>gi|348667954|gb|EGZ07779.1| hypothetical protein PHYSODRAFT_529044 [Phytophthora sojae]
Length = 460
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 131/305 (42%), Positives = 185/305 (60%), Gaps = 15/305 (4%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQ---IVKHEDLKHAISKVGD---FSDDNRSGIDRS 178
L++V +D+GR P V+ + V + + +S +G DDNR+GIDR
Sbjct: 147 LVDVCLDVGRVPYVYTGKKQRVVLSKHGATVAKDTIDEILSNLGGEMRIGDDNRAGIDRQ 206
Query: 179 LHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLV----EGGGSILVIGPPGVGKTTLI 234
LHRIS +R++ +V GLT RVGRA+ +A ++ DL+ S+LV+G PG GKTTLI
Sbjct: 207 LHRISVMRSKTDEVYGLTMRVGRALRNAACVLTDLLLSARHADKSVLVLGHPGSGKTTLI 266
Query: 235 REIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENH 294
R++AR +++ M+ V I+DTSNEIGGDG VPH +G ARRM V ++ Q VM+E V+NH
Sbjct: 267 RDVARCVSET-MENVCIIDTSNEIGGDGLVPHECVGWARRMMVRSLEAQAGVMVECVQNH 325
Query: 295 MPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLG 354
ET+I+DEIG E LAAST+ QRG +L+ +AHG ++KNP L+ LVGG + V +G
Sbjct: 326 TVETLIVDEIGRRAEVLAASTVRQRGPRLIASAHG-DFRALLKNPDLKGLVGGSQQVIVG 384
Query: 355 DEEAKKRKVQKTI-LERKGPPTFTCAVEM--ISRTECRVHHRLDATVDAILAGKLPLFEV 411
D A + + + +R G P F VE+ + R CRV + VD++ G FE
Sbjct: 385 DSAAAQSASKSKLQTQRAGNPIFDVIVELDHVVRGRCRVIWDVAKAVDSVFEGNGYAFET 444
Query: 412 RQMDA 416
RQ DA
Sbjct: 445 RQWDA 449
>gi|348667950|gb|EGZ07775.1| hypothetical protein PHYSODRAFT_529219 [Phytophthora sojae]
Length = 397
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 137/331 (41%), Positives = 195/331 (58%), Gaps = 16/331 (4%)
Query: 100 ELELFLELLPSRMRRE-LCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQ---IVKHE 155
EL L+LLP+ R L + L+++ +D+GR P V+ + V +
Sbjct: 59 ELGPMLDLLPADYRDAILAIDDYKNRLVDICLDVGRVPYVYTGKKQRVVLSKHGATVAKD 118
Query: 156 DLKHAISKVGD---FSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICD 212
+ +S +G DDNR+GIDR LHRIS +R++ +V GLT RVGRA+ +A ++ D
Sbjct: 119 TIDEILSNLGGEMRIGDDNRAGIDRQLHRISVMRSKTDEVYGLTMRVGRALRNAACVLTD 178
Query: 213 LV----EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSG 268
L+ S+LV+G G GKTTLIR++AR +++ M+ V I+DTSNEIGGDG VPH
Sbjct: 179 LLLSARHADKSVLVLGHSGSGKTTLIRDVARCVSET-MENVCIIDTSNEIGGDGLVPHEC 237
Query: 269 IGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAH 328
+G ARRM V ++ Q VM+E V+NH ET+I+DEIG E LAAST+ QRG +L+ +AH
Sbjct: 238 VGWARRMMVRSLEAQAGVMVECVQNHTVETLIVDEIGRRAEVLAASTVRQRGPRLIASAH 297
Query: 329 GMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTI-LERKGPPTFTCAVEM--ISR 385
G ++KNP L+ LVGG + V +GD A + + + +R G P F VE+ + R
Sbjct: 298 G-DFRALLKNPDLKGLVGGSQQVIVGDSAAAQSASKSKLQTQRAGNPIFDVIVELDHVVR 356
Query: 386 TECRVHHRLDATVDAILAGKLPLFEVRQMDA 416
CRV + VD++ G FE RQ DA
Sbjct: 357 GRCRVIWDVAKAVDSVFEGNGYAFETRQWDA 387
>gi|307109172|gb|EFN57410.1| hypothetical protein CHLNCDRAFT_21069 [Chlorella variabilis]
Length = 258
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 164/252 (65%), Gaps = 17/252 (6%)
Query: 173 SGIDRSLHRISAIRNRKMQVIGLTCRVGR-------------AVAGSAEIICDLVEGGGS 219
+GI +LHR+SA+R+R+ + GLT RVGR VA A S
Sbjct: 10 AGIPGTLHRVSAMRDRQGGIAGLTYRVGRHVPGGPPPPAADGCVAACAHSSSSCCCC--S 67
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
++ G PGVGKTTL+R++A +L+D ++VV+VDTSNE+ GDG PH+ IG ARRM VP+
Sbjct: 68 SILQGGPGVGKTTLLRDVASLLSDTFSQKVVVVDTSNEVAGDGSEPHACIGSARRMMVPS 127
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
QHSVMIE V+NHMP+ +I+DEIGT E A +IA RGV LVGTAHG ++ +++NP
Sbjct: 128 --QQHSVMIETVQNHMPDVVIVDEIGTAREVEACRSIAHRGVVLVGTAHGRSLKALMRNP 185
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
L L+GGI VTLGDEEA++ KT ER+G P F+ VE++SR+ RVH + +VD
Sbjct: 186 DLNGLIGGIHQVTLGDEEARRSNHGKTRTERRGEPAFSTLVEVLSRSRWRVHMSVARSVD 245
Query: 400 AILAGKLPLFEV 411
+LAG+ EV
Sbjct: 246 DMLAGRWEDGEV 257
>gi|397568725|gb|EJK46301.1| hypothetical protein THAOC_35034 [Thalassiosira oceanica]
Length = 710
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 132/339 (38%), Positives = 196/339 (57%), Gaps = 43/339 (12%)
Query: 104 FLELLPSRMRRELCMHRELG--DLIEVVMDLGRKPLARFPSGDWVIS---EQIVKHEDLK 158
L++LP+ L E+G + +V +D+GR+P + +S E +V+H+DLK
Sbjct: 355 LLDILPAEWGESL---EEIGLDGISDVSLDIGRRPYCWHSKRRYYLSSDTEYLVEHDDLK 411
Query: 159 HAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGG 218
I + +F DDNR+G+D LHRISAIR+ + +IGLT RVGR V G+A +I DL+
Sbjct: 412 EIILNLQEFGDDNRAGLDGQLHRISAIRDNQELIIGLTIRVGRHVEGNAALIRDLLADDR 471
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVI-----------------------VDTS 255
SIL++G PG GKTT++R+IA+ L+D V I VDTS
Sbjct: 472 SILLLGEPGSGKTTIVRDIAKELSD--RANVFIGKWSTFPCLFGGSSLTSNPPHAAVDTS 529
Query: 256 NEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST 315
NEI GDG VPH +G +RRM VP++ Q SVM+E ++NH PE ++IDEIG E AA T
Sbjct: 530 NEIAGDGGVPHPCVGMSRRMMVPSLRDQASVMVECLQNHTPEVMVIDEIGRGREVEAAQT 589
Query: 316 IAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRK-------VQKTIL 368
RGV+++ +AHG + +++KN L+ L+GG+ + T+GD EA++ + +QK +
Sbjct: 590 SKNRGVRMIASAHG-DLRSLMKNRELRGLIGGLATTTVGDMEARRMQKKTGGEILQKQVT 648
Query: 369 ERKGPPTFTCAVEMISR--TECRVHHRLDATVDAILAGK 405
+R P F +E+ E + + VDA+L GK
Sbjct: 649 QRAAAPIFETIIELRRGRLNEWHIIPDVATAVDAVLKGK 687
>gi|390337533|ref|XP_785121.2| PREDICTED: uncharacterized protein LOC579939 [Strongylocentrotus
purpuratus]
Length = 1849
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 167/289 (57%), Gaps = 10/289 (3%)
Query: 122 LGDLIEVVMDLGRKPLARFPSGDW-------VISEQIVKHEDLKHAI-SKVGDFSDDNRS 173
L L EVVMDLGRKP AR+ I E + +DLK + S D+RS
Sbjct: 1525 LDQLTEVVMDLGRKPSARYYQPGHPGQLKIKTIGENKLTKQDLKDILEGHCSPVSSDHRS 1584
Query: 174 GIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTL 233
I +LHR+ + NR+ + IGLT AV G A + DL+ G SIL +G PGVGK+T+
Sbjct: 1585 TIKETLHRVGIMCNRQNEPIGLTTLTKHAVLGCATPLFDLMNQGQSILFVGSPGVGKSTI 1644
Query: 234 IREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293
+RE AR++ D M+RVVIVDT NEI GDGDVPH +G ARR+Q+P+ + Q +++ E V N
Sbjct: 1645 LREAARVINDVVMRRVVIVDTCNEIAGDGDVPHPAVGGARRVQLPDRDSQPNMIREIVRN 1704
Query: 294 HMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTL 353
H P T++IDE+ TE +A A +RG+Q++ A G T+ +++ NP L+ L GGI ++ +
Sbjct: 1705 HSPHTLVIDEVVTEADAAAVHATRERGIQVISAAPGQTLQDVILNPKLRHLFGGIHNMAM 1764
Query: 354 GDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAIL 402
+ TI++R P F VEM R VH ++D L
Sbjct: 1765 S--HPGQGITGHTIMQRTQPAAFDILVEMYDRHRWIVHTDFTRSIDLCL 1811
>gi|218297092|ref|ZP_03497763.1| AAA ATPase [Thermus aquaticus Y51MC23]
gi|218242506|gb|EED09044.1| AAA ATPase [Thermus aquaticus Y51MC23]
Length = 319
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 123/317 (38%), Positives = 193/317 (60%), Gaps = 21/317 (6%)
Query: 94 RSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVK 153
R G + E ++ LP +R+E+ H L E+ MDLG + LA G+ SE+ V
Sbjct: 5 REGFEQEFAALMQKLPPWVRQEVEGHGP--QLEEIAMDLGAR-LAYTVDGEARYSEREVS 61
Query: 154 HEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEII-CD 212
EDL+ + +VG F ++NR+GI+ +LHR+S I++ ++ G+T RVG+ V G AE +
Sbjct: 62 KEDLQFVLHRVGGFKENNRAGIEGTLHRVSRIQSALGEMTGITIRVGKFVEGVAEPLRPY 121
Query: 213 LVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRA 272
L++G GSIL++GPP GKTTL+R++ R+LA+ RV++VDTSNEIGGDG +PH GI A
Sbjct: 122 LLDGQGSILLVGPPRTGKTTLLRDVVRILAERWGSRVLVVDTSNEIGGDGLIPHPGIRPA 181
Query: 273 RRMQVPN--VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGM 330
RRMQVP+ Q ++ +A+ NH PE +++DEIG + T ++RGV++V TAHG
Sbjct: 182 RRMQVPDPPAKTQGRIIYQAIANHSPEIVVVDEIGYNEDVYECLTASRRGVRVVATAHGE 241
Query: 331 TIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRV 390
+ ++++NP+L + LGD + K R ER+ P+F A++++ + +
Sbjct: 242 KLLDVLENPALHPV--------LGDPDLKAR-------ERRSRPSFQMALQVVGKGRFVL 286
Query: 391 HHRLDATVDAILAGKLP 407
+ L +D +L G P
Sbjct: 287 YPDLAKALDELLEGNEP 303
>gi|384432170|ref|YP_005641529.1| AAA ATPase [Thermus thermophilus SG0.5JP17-16]
gi|333967638|gb|AEG34402.1| AAA ATPase [Thermus thermophilus SG0.5JP17-16]
Length = 310
Score = 206 bits (523), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 192/317 (60%), Gaps = 21/317 (6%)
Query: 94 RSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVK 153
R G D E +E LP +R+E+ H L E+ MDLG PLA G+ S++ +
Sbjct: 5 REGFDREFAALMEKLPPWVRKEVEPHG--ARLEEIAMDLG-APLAYTVDGEARYSDREIT 61
Query: 154 HEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICD- 212
EDL + +VG F ++NR+GI+ +LHR+S I++ ++ G+T RVG+ V G AE +
Sbjct: 62 KEDLSFVLHRVGGFKENNRAGIEGTLHRVSRIQSALGEMTGITIRVGKFVEGVAEPLRPY 121
Query: 213 LVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRA 272
L+E GGS+LV+GPP GKTTL+R+I R+LA+ RVV+VDTSNEIGGDG H GI A
Sbjct: 122 LLESGGSLLVVGPPRTGKTTLLRDIVRILAERWGPRVVVVDTSNEIGGDGLTAHPGIRPA 181
Query: 273 RRMQVPN--VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGM 330
RRMQVP+ Q ++ +A+ NH PE +++DEIG + T ++RGV++V TAHG
Sbjct: 182 RRMQVPDPPSRNQGRIIYQAIANHSPEVVVVDEIGYNEDVQECLTASRRGVRVVATAHGE 241
Query: 331 TIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRV 390
+ ++++NP+L + LG+ + K+ + R+ P+F A++++++ V
Sbjct: 242 RLLDVLENPALHPV--------LGEPDLKEGR-------RRTRPSFGTALQVVAKGRYLV 286
Query: 391 HHRLDATVDAILAGKLP 407
+ L +D +L G+ P
Sbjct: 287 YPDLAQALDDLLQGREP 303
>gi|386361866|ref|YP_006061707.1| hypothetical protein [Thermus thermophilus JL-18]
gi|383510893|gb|AFH40323.1| hypothetical protein TtJL18_2503 [Thermus thermophilus JL-18]
Length = 310
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 190/317 (59%), Gaps = 21/317 (6%)
Query: 94 RSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVK 153
R G D E +E LP +R+E+ H L E+ MDLG PLA G SE+ +
Sbjct: 5 REGFDREFAALMEKLPPWVRKEVEPHG--ARLEEIAMDLG-APLAYTVDGAPRFSEREIT 61
Query: 154 HEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICD- 212
EDL + +VG F ++NR+GI+ +LHR+S I++ ++ G+T RVG+ V G AE +
Sbjct: 62 KEDLSFVLHRVGGFKENNRAGIEGTLHRVSRIQSALGEMTGITIRVGKFVEGVAEPLRPY 121
Query: 213 LVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRA 272
L+E GGS+LV+GPP GKTTL+R+I R+LA+ RVV+VDTSNEIGGDG H GI A
Sbjct: 122 LLESGGSLLVVGPPRTGKTTLLRDIVRILAEKWGPRVVVVDTSNEIGGDGLTAHPGIRPA 181
Query: 273 RRMQVPN--VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGM 330
RRMQVP+ Q ++ +A+ NH PE +++DEIG + T ++RGV++V TAHG
Sbjct: 182 RRMQVPDPPSRNQGRIIYQAIANHSPEVVVVDEIGYNEDVQECLTASRRGVRVVATAHGE 241
Query: 331 TIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRV 390
+ + ++NP+L + LG+ + ++ + R+ P+F A++++++ V
Sbjct: 242 RLLDALENPALHPV--------LGEPDLREGR-------RRTRPSFGTALQVVAKGRYLV 286
Query: 391 HHRLDATVDAILAGKLP 407
+ L +D +L G+ P
Sbjct: 287 YPDLAQALDDLLQGREP 303
>gi|290985586|ref|XP_002675506.1| predicted protein [Naegleria gruberi]
gi|284089103|gb|EFC42762.1| predicted protein [Naegleria gruberi]
Length = 508
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 184/312 (58%), Gaps = 10/312 (3%)
Query: 100 ELELFLELLPSRM--RRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDL 157
+L+ E+ P R + L L+E+VMD+ +KPL + E +
Sbjct: 171 QLDELFEIFPIEFAERVKAKCGENLDQLVEIVMDI-KKPLRLYYYQQDEKDETCTIDYQI 229
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
++I + F D+R+GI +LHR+S I +R VIGLT R+GRAV G E+ D+
Sbjct: 230 LNSICQNLIFGQDDRAGISGTLHRVSRITSRIGNVIGLTIRIGRAVVGIGELFKDVTNSN 289
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
+IL++G P GK+TLIR+++R+L++ + RVVIVDTS EI G GDVPHS G +RR+ V
Sbjct: 290 ENILLVGIPNSGKSTLIRDLSRVLSEQN--RVVIVDTSCEIAGLGDVPHSATGDSRRIPV 347
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
+ Q M+ AV+NH P+ I+IDEI E TI+QRGV+L +AHG T++ ++
Sbjct: 348 KDPKNQRVDMLRAVQNHSPQVIVIDEISDSKEVQTCRTISQRGVRLCASAHG-TLEKLLV 406
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISR----TECRVHHR 393
NP L+ L+GG+ VT+ D+ A+++ QK I + KG P F +E+ TE +++
Sbjct: 407 NPVLRDLLGGVGDVTVSDDSARQKGGQKIINQMKGSPIFGIIIEVKKSQNGDTEWIIYNN 466
Query: 394 LDATVDAILAGK 405
+ TV +IL G+
Sbjct: 467 VKETVRSILNGQ 478
>gi|340054200|emb|CCC48495.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 537
Score = 200 bits (508), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 177/307 (57%), Gaps = 7/307 (2%)
Query: 100 ELELFLELLPSRMRRELCMHREL--GDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDL 157
E++ L LL +R + H ++ E + LG+ R G+WV+ +L
Sbjct: 134 EVKHLLSLLAPPLRAAITSHPIFVEQEVEEFFIHLGQAVEVR--GGEWVLQTPPPTATEL 191
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+H + +V F DD R I + HR+S R R + +G+T RVGR V A+ + L
Sbjct: 192 QHTLKRVSHFGDDGRGCIKNTPHRVSLWRGRCGEPLGVTIRVGRFVPNVAQALLPLA-NQ 250
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMK-RVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
GS+L++ GVGKTTL+R+IA L+ + RVV+VDTSNEIGGD VP +GR RR+Q
Sbjct: 251 GSLLIVSKAGVGKTTLLRDIATSLSRKPCRPRVVVVDTSNEIGGDSPVPLPFLGRCRRIQ 310
Query: 277 VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336
VP Q +M + ++NH PE +++DEI T EA AA +I+QRGV L+ T HG ++ ++
Sbjct: 311 VPRREDQGDLMKQVLQNHSPEYVVVDEISTAAEAEAAWSISQRGVCLIATCHGESLAGVL 370
Query: 337 KNPSLQILVGGIESVTLGDEEAKKR-KVQKTILERKGPPTFTCAVEMISRTECRVHHRLD 395
+N +L +LVGG L +EE + R K++KT+LER P F E+ SR V+ ++
Sbjct: 371 QNQTLNLLVGGTAQAFLSNEERRLRNKLKKTVLERPYPSPFKFVAELNSRNTAHVYVDVN 430
Query: 396 ATVDAIL 402
VD +L
Sbjct: 431 QAVDCLL 437
>gi|291294925|ref|YP_003506323.1| AAA ATPase [Meiothermus ruber DSM 1279]
gi|290469884|gb|ADD27303.1| AAA ATPase [Meiothermus ruber DSM 1279]
Length = 318
Score = 199 bits (506), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 185/312 (59%), Gaps = 25/312 (8%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGD--WVISEQIVKHEDL 157
E +E LP +R E+ HR+ L E+V+DLG KPL + + D +V+ + V +DL
Sbjct: 19 EFARLMERLPPWVRVEVEGHRD--SLDEIVLDLG-KPLI-YTAADQVYVLEGRTVSKDDL 74
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+ ++G F ++NR+G++ +LHRIS I++ + +G+T R+GR V G AE + +E
Sbjct: 75 SYLTHRLGGFKENNRAGLEGTLHRISRIQDAYGETVGVTIRIGRFVMGVAEALRPWLEQT 134
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
GS+LV+GPP GKTTL+R+I R+LA + RV +VDTSNEIGGDG + H GI ARR+QV
Sbjct: 135 GSLLVVGPPRTGKTTLLRDIVRILAGRYGPRVAVVDTSNEIGGDGKLTHPGISPARRLQV 194
Query: 278 PN--VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
P+ Q V+ +A+ NH PE ++ DEIG + T ++RGV++V TAHG TI ++
Sbjct: 195 PDPPSKNQGWVIYQAIANHSPEVVVADEIGYNEDVFQCLTASRRGVRVVATAHGETILDL 254
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLD 395
++NP L + LGD KR+ + P+F +E+ + + ++
Sbjct: 255 LENPVLLPI--------LGDPVEGKRRSR---------PSFAMCLEVRGKGKFVLYPDFA 297
Query: 396 ATVDAILAGKLP 407
+D +LAG P
Sbjct: 298 EALDTLLAGGEP 309
>gi|297564982|ref|YP_003683954.1| AAA ATPase [Meiothermus silvanus DSM 9946]
gi|296849431|gb|ADH62446.1| AAA ATPase [Meiothermus silvanus DSM 9946]
Length = 322
Score = 199 bits (506), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 185/312 (59%), Gaps = 25/312 (8%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGD--WVISEQIVKHEDL 157
E +E LP +R E+ HR+ L E+V+DLG KPL + +GD +V+ + V +DL
Sbjct: 23 EFARLMERLPPWVRVEVEGHRD--SLDEIVLDLG-KPLI-YTAGDQVYVLEGRTVTKDDL 78
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+ ++G F ++NR+G++ +LHR+S I++ + +G+T RVGR V G AE + +E
Sbjct: 79 SYLTHRLGGFKENNRAGLEGTLHRVSRIQDAYGETVGVTIRVGRFVLGVAEALRPWLEQT 138
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
GS+LV+GPP GKTTL+R+I R+LA + RV +VDTSNEIGGDG + H GI ARR+QV
Sbjct: 139 GSLLVVGPPRTGKTTLLRDIVRILAGRYGPRVAVVDTSNEIGGDGKLTHPGISPARRLQV 198
Query: 278 PN--VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
P+ Q V+ +A+ NH PE ++ DEIG + T ++RGV++V TAHG TI ++
Sbjct: 199 PDPPSKNQGWVIYQAIANHSPEVVVADEIGYNEDVFQCLTASRRGVRVVATAHGETILDL 258
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLD 395
++NP L + LGD +R+ + P+F +E+ + + ++
Sbjct: 259 LENPVLLPI--------LGDPGEGRRRSR---------PSFAMCLEVRGKGKFVLYPDFA 301
Query: 396 ATVDAILAGKLP 407
+D +L G P
Sbjct: 302 EALDTLLTGGEP 313
>gi|357168544|ref|XP_003581698.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein ycf45-like
[Brachypodium distachyon]
Length = 157
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 92/146 (63%), Positives = 114/146 (78%)
Query: 237 IARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMP 296
+AR++AD+ KR VIVDTSNEIGGDGD+PH+ IG ARRMQVP +MQH VMIE VENHMP
Sbjct: 1 MARVVADEFQKRQVIVDTSNEIGGDGDIPHAAIGGARRMQVPEPSMQHRVMIEVVENHMP 60
Query: 297 ETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356
E +I+DEI TE EA A +I +RGV L+GTAHG + NI+KNP L L+GG+++VTLGDE
Sbjct: 61 EVVIVDEIXTETEAQACRSIVERGVMLIGTAHGERLANIIKNPVLSDLIGGVKTVTLGDE 120
Query: 357 EAKKRKVQKTILERKGPPTFTCAVEM 382
EA+ R ++ILERK PP F VE+
Sbjct: 121 EARARHTLRSILERKAPPAFPFLVEL 146
>gi|298705543|emb|CBJ28810.1| expressed unknown protein [Ectocarpus siliculosus]
Length = 305
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 163/259 (62%), Gaps = 24/259 (9%)
Query: 165 GDFSDDNRSGIDRSLHRISAIRNRK-MQVIGLTCRVGRAVAGSAEIICDLV--------- 214
G F+ DNR+G+ LHRIS +R R+ ++ G+T R+GR GSA ++ DL+
Sbjct: 10 GKFAGDNRAGVPGQLHRISVMRGREGRRIFGVTLRIGRYFPGSAGLVDDLLFHVQGSPDK 69
Query: 215 -EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH-SGIGRA 272
E S+LV+G PG GKTT++R+I R ++ + + VVIVDTSNEI GDG +PH + IG++
Sbjct: 70 PERAASVLVLGKPGCGKTTVLRDICRKISQE--QTVVIVDTSNEIAGDGHIPHLAAIGQS 127
Query: 273 RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTI 332
RRM VP+ QH+VM EA++NH P+TI++DE+ + EA A I RGV++V +AHG +
Sbjct: 128 RRMMVPDKTDQHNVMKEALQNHTPQTIVVDEVSNKNEARACLDIKARGVRVVASAHG-DL 186
Query: 333 DNIVKNPSLQILVGGIESVTLGDEEA----KKRKVQKTILERKGPPTFTCAVEM--ISRT 386
++++NP L LVGG SVTLGD A KVQ+ +R G P F VE+
Sbjct: 187 QSLLENPELNTLVGGTTSVTLGDAMAIATNAGNKVQR---QRAGAPIFDTIVELERGQVN 243
Query: 387 ECRVHHRLDATVDAILAGK 405
+ + +D VDAIL+GK
Sbjct: 244 KWTIVWNVDLAVDAILSGK 262
>gi|390337535|ref|XP_784840.3| PREDICTED: uncharacterized protein ycf45-like [Strongylocentrotus
purpuratus]
Length = 441
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 167/297 (56%), Gaps = 15/297 (5%)
Query: 125 LIEVVMDLGRKPLARF-PSG------DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDR 177
L EVV+D+GRKP AR+ SG + V++ V +DLK + G N G+ R
Sbjct: 119 LAEVVLDVGRKPRARYLKSGLSSEMMEKVLNRDEVTKQDLKGILEDSGFARTSNSQGMVR 178
Query: 178 -SLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIRE 236
+LHR+ + N + +VIG+T +V + G + D+ G SILV+GP GVGKTTL+RE
Sbjct: 179 DTLHRLGLLANIQGEVIGITAKVEHPLPGCLSPLYDIFNKGKSILVVGPTGVGKTTLLRE 238
Query: 237 IARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMP 296
AR+L+D K V+I+DT +EI G+GD+PH IG ARR+QV N+QH VM E +NH P
Sbjct: 239 AARVLSDVEKKNVMIIDTLSEIAGEGDIPHQSIGSARRLQVIESNLQHKVMSEVYQNHRP 298
Query: 297 ETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356
E +IIDEI + EA + RG+QL+ G T+ +++ N +L + GGI+ ++G
Sbjct: 299 EIVIIDEISSLEEAEKTLDMKLRGIQLIAGVQGKTLADVLLNTALTPITGGIKE-SVGYP 357
Query: 357 EAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGKLPLFEVRQ 413
++ R GP F VEM+ +H +DA+L G EV +
Sbjct: 358 GGVPGRL------RTGPVVFDVLVEMLDMERWIIHWDFQWAIDAVLPGGRRTLEVEE 408
>gi|342181564|emb|CCC91044.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 539
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 114/278 (41%), Positives = 164/278 (58%), Gaps = 5/278 (1%)
Query: 127 EVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIR 186
E LG+ R GDWVI DL++ + +VG F +D R I + HR++ R
Sbjct: 161 EFFFHLGQDIEVR--GGDWVIQAPPPTVGDLRYTLERVGRFGEDGRGCIRNTSHRVAVWR 218
Query: 187 NRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHM 246
R + +GLT RVGR V A I L G S+L++ GVGKTT++R++A L+ +
Sbjct: 219 GRHGEPLGLTIRVGRYVPNLARAIVPLARRG-SVLIVSKAGVGKTTILRDLAASLSREPS 277
Query: 247 K-RVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
+ RV+++DTSNEIGGD V +GR RR+QVP Q VM + ++NH PE +I+DEI
Sbjct: 278 RPRVMVIDTSNEIGGDSPVALPFLGRCRRVQVPRREAQQEVMRQVLQNHSPEYMIVDEIT 337
Query: 306 TELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKR-KVQ 364
+ EA AA +I+QRGV L+ T HG + +++N SL ILVGG+ L +EE + R KV+
Sbjct: 338 SAAEAEAAWSISQRGVHLIATCHGENLAGLLQNRSLNILVGGVAQAFLSNEERRLRNKVK 397
Query: 365 KTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAIL 402
KT+LER F VE+ SR ++ ++ VD +L
Sbjct: 398 KTVLERPNSSPFHFVVELTSRKCAHLYVDVNEAVDCLL 435
>gi|154341757|ref|XP_001566830.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064155|emb|CAM40352.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 551
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 114/278 (41%), Positives = 168/278 (60%), Gaps = 4/278 (1%)
Query: 127 EVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIR 186
E+ + LG+ R SG WVI +L++ + +G F D R + + HR S R
Sbjct: 144 ELFVHLGQDVEVR-GSGGWVIQLPPPTTAELQYLMKHIGRFGADGRGCVANTAHRASVWR 202
Query: 187 NRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHM 246
R + +G+T RVGR V G+A + L G S+L++ G+GKTTL+R++A LA D +
Sbjct: 203 GRHGEALGVTLRVGRYVPGAARALLPLARRG-SLLILSKAGMGKTTLLRDLAAGLAQDPL 261
Query: 247 K-RVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
RV +VDTSNEIGGDG +P +GR RR+QVP Q VMIE ++NH P+ +I+DEI
Sbjct: 262 TPRVTVVDTSNEIGGDGPIPLPYLGRCRRIQVPRREDQSRVMIEVIQNHTPDYLIVDEIA 321
Query: 306 TELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKR-KVQ 364
TE EA AA +I+QRGV ++GT HG ++ +++N +L +LVGG L +EE + R K +
Sbjct: 322 TEEEAEAAWSISQRGVHMIGTCHGEHLEGLLQNRALNLLVGGAAQAFLSNEERRLRNKTK 381
Query: 365 KTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAIL 402
KT+LER F+ VE+ +R ++ ++ VD L
Sbjct: 382 KTVLERPYNSPFSFVVELHARNRAHLYVDVNKAVDLAL 419
>gi|30692846|ref|NP_849744.1| putative stage III sporulation protein AA [Arabidopsis thaliana]
gi|110737929|dbj|BAF00902.1| hypothetical protein [Arabidopsis thaliana]
gi|332193461|gb|AEE31582.1| putative stage III sporulation protein AA [Arabidopsis thaliana]
Length = 303
Score = 189 bits (481), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/205 (51%), Positives = 138/205 (67%), Gaps = 19/205 (9%)
Query: 87 PNSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF---PSG 143
P+S+S D L FLE+LP +R L L+EV+MDLGR P AR+ P G
Sbjct: 35 PDSSSMI---VDDNLGAFLEILPKDLRHRLLNDSRRNQLVEVIMDLGRPPEARYLGEPGG 91
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
++ + + V E+L+ A VG+F DNR+GI+ +LHRISAIRNRK ++GLTCRVGRAV
Sbjct: 92 QYLRNNE-VSMEELEDAQELVGEFGADNRAGIEGTLHRISAIRNRKGFIVGLTCRVGRAV 150
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGD 263
+G +++ DL+ G SIL +G PGVGKTT++REIAR+L+D+ KRVVI+DTSNEIGGDGD
Sbjct: 151 SGHIDMLYDLLHYGKSILFVGRPGVGKTTVLREIARVLSDEFQKRVVIIDTSNEIGGDGD 210
Query: 264 VPHSGIG------------RARRMQ 276
+PHS IG RARR Q
Sbjct: 211 IPHSAIGGIETVTLGDEEARARRSQ 235
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 345 VGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAG 404
+GGIE+VTLGDEEA+ R+ QK+ILERK PPTF +EM R + + H+ + +VD +L G
Sbjct: 216 IGGIETVTLGDEEARARRSQKSILERKAPPTFYFLIEMRER-DYWIAHQTEKSVDMLLRG 274
Query: 405 KLPLFEVRQMDAEH 418
+ P+ EVR+ D E+
Sbjct: 275 RNPMVEVRRRDEEY 288
>gi|401425735|ref|XP_003877352.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493597|emb|CBZ28886.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 550
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 132/369 (35%), Positives = 201/369 (54%), Gaps = 25/369 (6%)
Query: 38 TSFSSSFRRTRRARKTFVSQKPTPPSIHPPTVRRPSDWAPPRNGSVSDSPNSASTSRSGA 97
T+F S++ + +A +F+ P + R DW + A
Sbjct: 72 TTFRSAWNKLHKAYASFLETDPARAA-----ELRAKDWQ--------------GLALYSA 112
Query: 98 DIELELFLELLPSRMRRELCMH--RELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHE 155
E + LLP+ +R + H + D+ E+ + LG+ R SG WVI Q
Sbjct: 113 YAETLHLMSLLPATLRTAITQHPSFDYTDVEELFVHLGQDVEVR-GSGGWVIQLQPPTTA 171
Query: 156 DLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVE 215
DL++ + +G F D R + + HR S R R + +G+T RVGR V G+A + L +
Sbjct: 172 DLEYLVKHIGRFGADGRGCVANTAHRASVWRGRHGEALGVTLRVGRYVPGAARALLPLAQ 231
Query: 216 GGGSILVIGPPGVGKTTLIREIARMLADD-HMKRVVIVDTSNEIGGDGDVPHSGIGRARR 274
G S+L++ G+GKTTL+R++A LA + RV +VDTSNEIGGDG +P +GR RR
Sbjct: 232 RG-SLLILSKAGMGKTTLLRDLAAALAQEPGAPRVTVVDTSNEIGGDGPIPLPYLGRCRR 290
Query: 275 MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDN 334
+QV Q VM+E ++NH PE +I+DEI TE EA AA +I+QRGV L+GT HG ++
Sbjct: 291 IQVARREDQGRVMMEVIQNHTPEYLIVDEIATEEEAEAAWSISQRGVHLIGTCHGEHLEG 350
Query: 335 IVKNPSLQILVGGIESVTLGDEEAKKR-KVQKTILERKGPPTFTCAVEMISRTECRVHHR 393
+++N +L +LVGG L +EE + R K +KT+LER F+ VE+ R+ ++
Sbjct: 351 LLQNRALNLLVGGAAQAFLSNEERRLRNKTRKTVLERPYSSPFSFVVELHGRSRGHLYVD 410
Query: 394 LDATVDAIL 402
++ VD +L
Sbjct: 411 VNKAVDLVL 419
>gi|339898849|ref|XP_001467056.2| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|321398540|emb|CAM70107.2| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 551
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 131/369 (35%), Positives = 201/369 (54%), Gaps = 25/369 (6%)
Query: 38 TSFSSSFRRTRRARKTFVSQKPTPPSIHPPTVRRPSDWAPPRNGSVSDSPNSASTSRSGA 97
T+F S++ + +A +F+ P + R DW + A
Sbjct: 72 TTFRSAWSKLHKAYASFLETDPARAA-----ELRAKDWQ--------------GLALYNA 112
Query: 98 DIELELFLELLPSRMRRELCMH--RELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHE 155
E + LLP+ +R + H + ++ E+ + LG+ R SG WVI
Sbjct: 113 YAETLHLMSLLPATLRTAITQHPSFDYTEVEELFVHLGQDVEVR-GSGGWVIQLPPPTTA 171
Query: 156 DLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVE 215
DL++ + +G F D R + + HR SA R R + +G+T RVGR V G+A + L +
Sbjct: 172 DLQYLVKHIGRFGADGRGCVANTAHRASAWRGRFGEALGVTLRVGRYVPGAARALLPLAQ 231
Query: 216 GGGSILVIGPPGVGKTTLIREIARMLADD-HMKRVVIVDTSNEIGGDGDVPHSGIGRARR 274
G S+L++ G+GKTTL+R++A LA + RV +VDTSNEIGGDG +P +GR RR
Sbjct: 232 RG-SLLILSKAGMGKTTLLRDLAAALAQEPGTPRVTVVDTSNEIGGDGPIPLPYLGRCRR 290
Query: 275 MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDN 334
+QV Q VM+E ++NH PE +I+DEI TE EA AA +I+QRGV L+GT HG ++
Sbjct: 291 IQVARREDQGRVMMEVIQNHTPEYLIVDEIATEEEAEAAWSISQRGVHLIGTCHGEHLEG 350
Query: 335 IVKNPSLQILVGGIESVTLGDEEAKKR-KVQKTILERKGPPTFTCAVEMISRTECRVHHR 393
+++N +L +LVGG L +EE + R K +KT+LER F+ VE+ +R ++
Sbjct: 351 LLQNRALNLLVGGAAQAFLSNEERRLRNKTKKTVLERPYSSPFSFLVELHARNRGHLYVD 410
Query: 394 LDATVDAIL 402
++ VD +L
Sbjct: 411 VNKAVDLVL 419
>gi|398019514|ref|XP_003862921.1| hypothetical protein, conserved [Leishmania donovani]
gi|322501152|emb|CBZ36230.1| hypothetical protein, conserved [Leishmania donovani]
Length = 551
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 131/369 (35%), Positives = 201/369 (54%), Gaps = 25/369 (6%)
Query: 38 TSFSSSFRRTRRARKTFVSQKPTPPSIHPPTVRRPSDWAPPRNGSVSDSPNSASTSRSGA 97
T+F S++ + +A +F+ P + R DW + A
Sbjct: 72 TTFRSAWSKLHKAYASFLETDPARAA-----ELRAKDWQ--------------GLALYNA 112
Query: 98 DIELELFLELLPSRMRRELCMH--RELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHE 155
E + LLP+ +R + H + ++ E+ + LG+ R SG WVI
Sbjct: 113 YAETLHLMSLLPATLRTAITQHPSFDYTEVEELFVHLGQDVEVR-GSGGWVIQLPPPTTA 171
Query: 156 DLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVE 215
DL++ + +G F D R + + HR SA R R + +G+T RVGR V G+A + L +
Sbjct: 172 DLQYLVKHIGRFGADGRGCVANTAHRASAWRGRFGEALGVTLRVGRYVPGAARALLPLAQ 231
Query: 216 GGGSILVIGPPGVGKTTLIREIARMLADD-HMKRVVIVDTSNEIGGDGDVPHSGIGRARR 274
G S+L++ G+GKTTL+R++A LA + RV +VDTSNEIGGDG +P +GR RR
Sbjct: 232 RG-SLLILSKAGMGKTTLLRDLAAALAQEPGTPRVTVVDTSNEIGGDGPIPLPYLGRCRR 290
Query: 275 MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDN 334
+QV Q VM+E ++NH PE +I+DEI TE EA AA +I+QRGV L+GT HG ++
Sbjct: 291 IQVARREDQGRVMMEVIQNHTPEYLIVDEIATEEEAEAAWSISQRGVHLIGTCHGEHLEG 350
Query: 335 IVKNPSLQILVGGIESVTLGDEEAKKR-KVQKTILERKGPPTFTCAVEMISRTECRVHHR 393
+++N +L +LVGG L +EE + R K +KT+LER F+ VE+ +R ++
Sbjct: 351 LLQNRALNLLVGGAAQAFLSNEERRLRNKTKKTVLERPYSSPFSFLVELHARNRGHLYVD 410
Query: 394 LDATVDAIL 402
++ VD +L
Sbjct: 411 VNKAVDLVL 419
>gi|261328858|emb|CBH11836.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 531
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 113/278 (40%), Positives = 163/278 (58%), Gaps = 5/278 (1%)
Query: 127 EVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIR 186
E + LG+ R DWVI DL++ + +VG F DD R I + HR++ R
Sbjct: 160 EFFLHLGQDIEVR--GADWVIQVPPPSVTDLRYTLERVGRFGDDGRGCIGHTPHRVAVWR 217
Query: 187 NRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHM 246
R + +GLT RVGR V A + L G S+L++ G+GKTT++R++A L+ D
Sbjct: 218 GRLGEPLGLTIRVGRYVPNVARALVPLARRG-SVLILSKAGMGKTTILRDLAASLSRDPA 276
Query: 247 K-RVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
K RV++VDTSNEIGGD +P +GR RR+QVP Q VM + ++NH PE +I+DE+
Sbjct: 277 KPRVMVVDTSNEIGGDSPMPLPFLGRCRRIQVPRREEQQEVMKQILQNHSPEYVIVDEVS 336
Query: 306 TELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKR-KVQ 364
T EA +I+QRGV LV T HG ++ +++N SL +LVGG L +EE + R K++
Sbjct: 337 TTAEAEVTWSISQRGVHLVATCHGESLAGLLQNQSLNLLVGGTAHAFLSNEERRLRNKIK 396
Query: 365 KTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAIL 402
KTILER F VE+ SR ++ ++ VD +L
Sbjct: 397 KTILERPHSSPFKFVVELHSRKFAHLYVDVNQAVDCLL 434
>gi|72390323|ref|XP_845456.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62359508|gb|AAX79944.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70801991|gb|AAZ11897.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 470
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 113/278 (40%), Positives = 163/278 (58%), Gaps = 5/278 (1%)
Query: 127 EVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIR 186
E + LG+ R DWVI DL++ + +VG F DD R I + HR++ R
Sbjct: 99 EFFLHLGQDIEVR--GADWVIQVPPPSVTDLRYTLERVGRFGDDGRGCIGHTPHRVAVWR 156
Query: 187 NRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHM 246
R + +GLT RVGR V A + L G S+L++ G+GKTT++R++A L+ D
Sbjct: 157 GRLGEPLGLTIRVGRYVPNVARALVPLARRG-SVLILSKAGMGKTTILRDLAASLSRDPA 215
Query: 247 K-RVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
K RV++VDTSNEIGGD +P +GR RR+QVP Q VM + ++NH PE +I+DE+
Sbjct: 216 KPRVMVVDTSNEIGGDSPMPLPFLGRCRRIQVPRREEQQEVMKQILQNHSPEYVIVDEVS 275
Query: 306 TELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKR-KVQ 364
T EA +I+QRGV LV T HG ++ +++N SL +LVGG L +EE + R K++
Sbjct: 276 TTAEAEVTWSISQRGVHLVATCHGESLAGLLQNQSLNLLVGGTAHAFLSNEERRLRNKIK 335
Query: 365 KTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAIL 402
KTILER F VE+ SR ++ ++ VD +L
Sbjct: 336 KTILERPHSSPFKFVVELHSRKFAHLYVDVNQAVDCLL 373
>gi|428178844|gb|EKX47717.1| hypothetical protein GUITHDRAFT_69358 [Guillardia theta CCMP2712]
Length = 353
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 170/320 (53%), Gaps = 26/320 (8%)
Query: 109 PSRMRRELCMHRELGDLIEVVMDLGRKPLARF--PSGDWVISEQIVK----HEDLK---- 158
P R R + +L DL E+ + LGR P A F P + E + + D+
Sbjct: 6 PVRARLQEQFSDKLRDLNEIYLQLGRWPEAVFANPHTGQLYREPLAQVNCEQSDIALFAE 65
Query: 159 -HAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQ------VIGLTCRVGRAVAGSAEIIC 211
+ + G R GID +LHR+S I + + VIG+T RVG+ V G+ + +
Sbjct: 66 MFSKTHTGSLLATRRIGIDGTLHRLSVILSHRTSSEGVPSVIGVTARVGKTVEGTLDSLA 125
Query: 212 -DLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIG 270
DL++ GS+L+IG P GKTT +RE AR L++D + VV+VD + EIGGDG VPH IG
Sbjct: 126 PDLLQSTGSVLLIGRPNSGKTTCLREFARRLSEDKNQIVVVVDKTCEIGGDGIVPHPAIG 185
Query: 271 RARRMQVPNV-------NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQL 323
AR + V + N+QH M EAVEN P +I+DEI + E A T++QRG+++
Sbjct: 186 NARWLPVETLKKDGQMFNLQHERMREAVENQSPHVVIVDEISSATEVEAIRTMSQRGIRI 245
Query: 324 VGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRK-VQKTILERKGPPTFTCAVEM 382
+ HG T+ ++ +P L GG +V L EEA KRK QK++L R P F AVEM
Sbjct: 246 IAAVHGGTLPMLLHDPDRAALTGGCHTVLLSGEEANKRKDKQKSVLMRMHEPMFQMAVEM 305
Query: 383 ISRTECRVHHRLDATVDAIL 402
R +H + VD
Sbjct: 306 HERNRWILHRNVRHAVDCYF 325
>gi|157872545|ref|XP_001684813.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68127883|emb|CAJ06408.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 551
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/303 (39%), Positives = 181/303 (59%), Gaps = 6/303 (1%)
Query: 104 FLELLPSRMRRELCMHR--ELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAI 161
+ LLP+ +R + H + ++ E+ + LG+ R SG WVI DL++ +
Sbjct: 119 LMSLLPATLRTAITQHSSFDYTEVEELFVHLGQDVEVR-GSGGWVIQLPPPTTADLQYLV 177
Query: 162 SKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSIL 221
+G F D R + + HR S R R + +G+T RVGR V G+A + L + G S+L
Sbjct: 178 KHIGRFGADGRGCVANTAHRASVWRGRHGEALGVTLRVGRYVPGAARALLPLAQRG-SLL 236
Query: 222 VIGPPGVGKTTLIREIARMLADD-HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNV 280
++ G+GKTTL+R++A LA + RV +VDTSNEIGGDG +P +GR RR+QV
Sbjct: 237 ILSKAGMGKTTLLRDLAAALAQEPGTPRVTVVDTSNEIGGDGPIPLPYLGRCRRIQVAQR 296
Query: 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPS 340
Q VM+E ++NH PE +I+DEI TE EA AA +I+QRGV L+GT HG ++ +++N +
Sbjct: 297 QDQGRVMMEVIQNHTPEYLIVDEIATEEEAEAAWSISQRGVHLIGTCHGEHLEGLLQNRA 356
Query: 341 LQILVGGIESVTLGDEEAKKR-KVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
L +LVGG L +EE + R K++KT+LER F+ VE+ +R ++ ++ VD
Sbjct: 357 LNLLVGGAAQAFLSNEERRLRNKMKKTVLERPYSSPFSFVVELHARNLGHLYVDVNKAVD 416
Query: 400 AIL 402
+L
Sbjct: 417 LVL 419
>gi|407852006|gb|EKG05683.1| hypothetical protein TCSYLVIO_003242 [Trypanosoma cruzi]
Length = 539
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 175/307 (57%), Gaps = 7/307 (2%)
Query: 100 ELELFLELLPSRMRRELCMHREL--GDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDL 157
E++ L +L +R + H D+ E + LG++ R G+WV +L
Sbjct: 131 EVKHLLSILAPSLREAIISHPSFSHADVEEFFLHLGQEMEVR--GGEWVAQLPPPSVSEL 188
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+ +I K+G F DD R I + HR+S R R + +G+T RVGR V A + L G
Sbjct: 189 QFSIEKIGQFGDDGRGCIRNTPHRVSVWRGRLGEPLGITIRVGRYVPNVARALIPLAHKG 248
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMK-RVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
S+L++ G+GKTTL+R++A L+ + K RV++VDTSNEIGGD +P +GR RR+Q
Sbjct: 249 -SVLILSKAGIGKTTLLRDLAASLSREPSKPRVIVVDTSNEIGGDCPIPLPFLGRCRRVQ 307
Query: 277 VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336
V Q +M + ++NH PE +++DEI T EA AA ++ QRGV L+ T HG + ++
Sbjct: 308 VSRREDQGQIMTQILQNHSPEYVVVDEIATASEAEAAWSMTQRGVHLIATCHGENLHGLL 367
Query: 337 KNPSLQILVGGIESVTLGDEEAKKR-KVQKTILERKGPPTFTCAVEMISRTECRVHHRLD 395
+N SL +LVGG L +EE + R K +KTILER F VE+ SR + V+ ++
Sbjct: 368 QNQSLNLLVGGAAHAFLSNEERRLRNKSKKTILERPHLSPFRFVVELNSRNKAHVYTDVN 427
Query: 396 ATVDAIL 402
VD +L
Sbjct: 428 TAVDLLL 434
>gi|320450693|ref|YP_004202789.1| AAA ATPase [Thermus scotoductus SA-01]
gi|320150862|gb|ADW22240.1| AAA ATPase [Thermus scotoductus SA-01]
Length = 316
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 169/311 (54%), Gaps = 19/311 (6%)
Query: 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHA 160
LE L P+ +R + E + EV MDL R + R ++ E V D+++
Sbjct: 19 LERLLSYFPAWIRSLITEDVEGTE--EVAMDLDRPLVIRRRGEQYLYRE--VSAADIEYF 74
Query: 161 ISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI 220
+KVG F + R+GI +LHRIS IR+ IG T R GRA+ G A+ + + G S+
Sbjct: 75 YNKVGSFRPNGRAGIPGTLHRISVIRDSDDLAIGFTIRFGRAIPGIAKPLQKWISGRDSV 134
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNV 280
L+IGPPGVGKTTL+R I A R+VIVDTSNEI GDG VPH IG ARRM V +
Sbjct: 135 LIIGPPGVGKTTLLRGIVEEKAKVLKARLVIVDTSNEIAGDGTVPHPIIGSARRMMVGDP 194
Query: 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPS 340
Q S++++A+ NH PETI++DEIG + T +RGV +V T HG + ++++NP
Sbjct: 195 RKQASIIMQAITNHSPETIVVDEIGYHDDVAVLETARRRGVDIVATVHGEDLIDVLENPV 254
Query: 341 LQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDA 400
L+ L+G D E +R + P+F + ++++ +V+ +D
Sbjct: 255 LKPLLG------YPDLEHGRRLTR---------PSFRIGIAVLAKGVYKVYPDFTLAIDQ 299
Query: 401 ILAGKLPLFEV 411
L + P EV
Sbjct: 300 ALRREDPEGEV 310
>gi|326516068|dbj|BAJ88057.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 160
Score = 180 bits (457), Expect = 2e-42, Method: Composition-based stats.
Identities = 84/121 (69%), Positives = 100/121 (82%)
Query: 166 DFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGP 225
DF DNR+GI R+LH ISAI NR+ ++GLTCRVGRAV GSA ++ DLV+ GGS+L+IGP
Sbjct: 5 DFGGDNRAGISRTLHWISAISNRQADIVGLTCRVGRAVPGSANLLQDLVKAGGSLLLIGP 64
Query: 226 PGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHS 285
GV KT +IREIARMLADD+ KRV+IVDTSNEI GDGD+PH GIG ARR+QVP+ MQH
Sbjct: 65 LGVWKTIVIREIARMLADDYDKRVMIVDTSNEIAGDGDIPHPGIGNARRLQVPDQEMQHK 124
Query: 286 V 286
V
Sbjct: 125 V 125
>gi|159481614|ref|XP_001698873.1| hypothetical protein CHLREDRAFT_151995 [Chlamydomonas reinhardtii]
gi|158273365|gb|EDO99155.1| predicted protein [Chlamydomonas reinhardtii]
Length = 715
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/190 (51%), Positives = 128/190 (67%), Gaps = 1/190 (0%)
Query: 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRAR 273
+E GS+L++G PG GKTT++R+IAR+LADD +RVV+VDTSNEI GD PH IG AR
Sbjct: 422 LEAAGSLLLVGRPGSGKTTVLRDIARLLADDLDRRVVVVDTSNEIAGDDPTPHPCIGSAR 481
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
RM VP + VM+EAV+NH PE +++DEI +E E LAA +IAQRGV LV T HG ++
Sbjct: 482 RMMVPRRELLWRVMLEAVQNHGPEVLVVDEISSEEEVLAAQSIAQRGVMLVATTHGPSLK 541
Query: 334 NIVKNPSLQILVGGIESVTLGDEEAKKRKV-QKTILERKGPPTFTCAVEMISRTECRVHH 392
+++N +L L+GGIE VT+GD A++ KT LERK PTF VE+ VH
Sbjct: 542 ALLRNHTLNPLLGGIEVVTIGDVAARESNSGNKTRLERKDMPTFAAVVEVKPGGRLLVHP 601
Query: 393 RLDATVDAIL 402
+VD +L
Sbjct: 602 DTAESVDLLL 611
Score = 43.1 bits (100), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 167 FSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAG 205
F DNR + SLHRISA+R+ ++ GLT RVGR G
Sbjct: 324 FGTDNRCCVPGSLHRISAMRDTAGRIYGLTYRVGRHTHG 362
>gi|71422331|ref|XP_812102.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70876843|gb|EAN90251.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 539
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/308 (38%), Positives = 176/308 (57%), Gaps = 9/308 (2%)
Query: 100 ELELFLELLPSRMRRELCMHREL--GDLIEVVMDLGRKPLARFPSGD-WVISEQIVKHED 156
E++ L +LP +R + H D+ E + LG++ R GD WV +
Sbjct: 131 EVKHLLSILPPSLREAIISHPSFSHADVEEFFVHLGQEMEVR---GDGWVAQLPPPSVSE 187
Query: 157 LKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEG 216
L+ +I K+G F DD R I + HR+S R R + +G+T RVGR V A + L
Sbjct: 188 LQFSIEKIGHFGDDGRGCIRNTPHRVSVWRGRLGEPLGITIRVGRYVPNVARALIPLAHK 247
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMK-RVVIVDTSNEIGGDGDVPHSGIGRARRM 275
G S+L++ G+GKTTL+R++A L+ + K RV++VDTSNEIGGD +P +GR RR+
Sbjct: 248 G-SVLILSKAGIGKTTLLRDLAASLSREPSKPRVIVVDTSNEIGGDCPIPLPFLGRCRRV 306
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
QV Q +M + ++NH PE +++DEI T EA AA ++ QRGV L+ T HG + +
Sbjct: 307 QVSRREDQGQIMTQILQNHSPEYVVVDEIATASEAEAAWSMTQRGVHLIATCHGENLHGL 366
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKR-KVQKTILERKGPPTFTCAVEMISRTECRVHHRL 394
++N SL +LVGG L +EE + R K +KTILER F VE+ SR + V+ +
Sbjct: 367 LQNQSLNLLVGGAAQAFLSNEERRLRNKSKKTILERPHLSPFRFVVELNSRNKAHVYTDV 426
Query: 395 DATVDAIL 402
+ VD +L
Sbjct: 427 NTAVDLLL 434
>gi|297567949|ref|YP_003686919.1| AAA ATPase [Meiothermus silvanus DSM 9946]
gi|296852398|gb|ADH65411.1| AAA ATPase [Meiothermus silvanus DSM 9946]
Length = 386
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 175/336 (52%), Gaps = 33/336 (9%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+LE LE+LP + E ++ L E+ +D+GR P + + Q DL +
Sbjct: 6 QLERILEVLPDWIAAEARTVKD--SLEEIALDIGRIPHYWCGAPPPLAGSQPFSEADLAN 63
Query: 160 AISKVGD-----FSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLV 214
+K+ F +D R GI +LHRISAI++R + GLT R+ R V G A+ + +
Sbjct: 64 IQAKLSSRYQVSFREDGRVGIGGTLHRISAIKDRYKSLAGLTIRLARVVEGVADPVMPYL 123
Query: 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARR 274
+L+IGPPGVGKTT +R++ R A +VV+VDTSNEIGG+G VPH +G ARR
Sbjct: 124 LQADGVLIIGPPGVGKTTFLRDVVRQYAQQIGPKVVVVDTSNEIGGEGLVPHPTLGSARR 183
Query: 275 MQVPNVN---------MQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVG 325
+QVP N M +EA+ NH P+ I+ DE+G + TI +RG++ +
Sbjct: 184 LQVPTPNYAIGETFQMMLARTYLEALANHGPQVIVGDEVGYPEDVAVVETIGKRGIKGIV 243
Query: 326 TAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISR 385
T HG T+ ++++NP L L+G D A++ R+G P F+ A+E+ +
Sbjct: 244 TVHGRTLRDVLENPVLWPLIG------RPDLPARR---------RQGRPVFSMALEVRGK 288
Query: 386 TECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEP 421
V+ L +D +L G P E + A +P
Sbjct: 289 GRFAVYPDLAGAIDTLLQGGQP--EAVTLGATEQKP 322
>gi|71420679|ref|XP_811568.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70876244|gb|EAN89717.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 539
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/307 (37%), Positives = 174/307 (56%), Gaps = 7/307 (2%)
Query: 100 ELELFLELLPSRMRRELCMHREL--GDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDL 157
E++ L +L +R + H D+ E + LG++ R +WV +L
Sbjct: 131 EVKHLLSILAPSLREAVISHPSFSHADVEEFFVHLGQEMEVR--GDEWVAQLPPPSVSEL 188
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
+ +I K+G F DD R I + HR+S R R + +G+T RVGR V A + L G
Sbjct: 189 QFSIEKIGHFGDDGRGCIRNTPHRVSVWRGRLGEPLGITIRVGRYVPNVARALIPLAHKG 248
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMK-RVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
S+L++ G+GKTTL+R++A L+ + K RV++VDTSNEIGGD +P +GR RR+Q
Sbjct: 249 -SVLILSKAGIGKTTLLRDLAASLSREPSKPRVIVVDTSNEIGGDCPIPLPFLGRCRRVQ 307
Query: 277 VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336
V Q +M + ++NH PE +++DEI T EA AA ++ QRGV L+ T HG + ++
Sbjct: 308 VSRREDQGQIMTQILQNHSPEYVVVDEIATASEAEAAWSMTQRGVHLIATCHGENLHGLL 367
Query: 337 KNPSLQILVGGIESVTLGDEEAKKR-KVQKTILERKGPPTFTCAVEMISRTECRVHHRLD 395
+N SL +LVGG L +EE + R K +KTILER F VE+ SR + V+ ++
Sbjct: 368 QNQSLNLLVGGAAQAFLSNEERRLRNKSKKTILERPHLSPFRFVVELNSRNKAHVYTDVN 427
Query: 396 ATVDAIL 402
VD +L
Sbjct: 428 TAVDLLL 434
>gi|407416930|gb|EKF37845.1| hypothetical protein MOQ_001953 [Trypanosoma cruzi marinkellei]
Length = 539
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 118/308 (38%), Positives = 175/308 (56%), Gaps = 9/308 (2%)
Query: 100 ELELFLELLPSRMRRELCMHRELG--DLIEVVMDLGRKPLARFPSGD-WVISEQIVKHED 156
E++ L +L +R + H D+ E + LG++ R GD WV +
Sbjct: 131 EVKHLLSILAPSLREAIISHPFFSHEDVEEFFVHLGQEIEVR---GDGWVAQLPPPSVNE 187
Query: 157 LKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEG 216
L+ +I K+G F DD R I + HR+S R R + +G+T RVGR V A + L
Sbjct: 188 LQFSIEKIGRFGDDGRGCIRNTPHRVSVWRGRLGEPLGITIRVGRYVPNVARALIPLAHK 247
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMK-RVVIVDTSNEIGGDGDVPHSGIGRARRM 275
G S+L++ G+GKTTL+R++A L+ + K RV++VDTSNEIGGD +P +GR RR+
Sbjct: 248 G-SVLILSKAGIGKTTLLRDLAASLSREPSKPRVIVVDTSNEIGGDCPIPLPFLGRCRRV 306
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
QV Q +M + ++NH PE +++DEI T EA AA ++ QRGV L+ T HG + +
Sbjct: 307 QVSRREDQGQIMTQILQNHSPEYVVVDEIATASEAEAAWSMTQRGVHLIATCHGENLHGL 366
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKR-KVQKTILERKGPPTFTCAVEMISRTECRVHHRL 394
++N SL +LVGG L +EE + R K +KTILER F VE+ SR + V+ +
Sbjct: 367 LQNQSLNLLVGGAAQAFLSNEERRLRNKSKKTILERPHLSPFRFVVELNSRNKAHVYTDV 426
Query: 395 DATVDAIL 402
+ VD +L
Sbjct: 427 NTAVDLLL 434
>gi|159466496|ref|XP_001691445.1| hypothetical protein CHLREDRAFT_145023 [Chlamydomonas reinhardtii]
gi|158279417|gb|EDP05178.1| predicted protein [Chlamydomonas reinhardtii]
Length = 415
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/186 (48%), Positives = 124/186 (66%), Gaps = 1/186 (0%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
S+L++G PG GKTTL+R+IAR LADD VV+VDTSNEI G VPHS IG ARR++V
Sbjct: 209 SLLLLGRPGAGKTTLLRDIARFLADDLGLSVVVVDTSNEIAGGDAVPHSCIGSARRLKVG 268
Query: 279 NVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKN 338
+ +VM+EAV+NH P+ +++DE+G+ EA AA +I+QRGV LV TAHG + +I+ N
Sbjct: 269 RRDQLQAVMLEAVQNHGPQVVVVDELGSRQEAEAARSISQRGVMLVATAHGTDLRSIMGN 328
Query: 339 PSLQILVGGIESVTL-GDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
P L LVGG+++V L + KT ER+G PTF C VE+ R+ + A+
Sbjct: 329 PDLNSLVGGMQTVILGDAAAGAAQGGAKTRTERRGEPTFRCLVEVHGAGVLRLRPDVAAS 388
Query: 398 VDAILA 403
VDA+L
Sbjct: 389 VDALLG 394
>gi|159466478|ref|XP_001691436.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279408|gb|EDP05169.1| predicted protein [Chlamydomonas reinhardtii]
Length = 382
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 116/170 (68%), Gaps = 1/170 (0%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
GGS+L++G PG GKTTL+R+IAR LADD VV+VDTSNEI G VPHS IG ARR++
Sbjct: 211 GGSLLLLGRPGAGKTTLLRDIARFLADDLGLSVVVVDTSNEIAGGDTVPHSCIGSARRLK 270
Query: 277 VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336
V + +VM+EAV+NH P+ +++DE+G+ EA AA +I+QRGV LV TAHG + +I+
Sbjct: 271 VGRRDQLQAVMLEAVQNHGPQVVVVDELGSRQEAEAARSISQRGVMLVATAHGTDLRSIM 330
Query: 337 KNPSLQILVGGIESVTL-GDEEAKKRKVQKTILERKGPPTFTCAVEMISR 385
NP L LVGG+++V L KT ER+G PTF C VE+ R
Sbjct: 331 GNPDLNSLVGGMQTVILGDAAAGAAHGGAKTRTERRGEPTFRCLVEVQGR 380
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 309 EALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTL-GDEEAKKRKVQKTI 367
EA AA +I+QRGV LV TAHG + +I+ NP L LVGG+++V L KT
Sbjct: 63 EAEAARSISQRGVMLVATAHGTDLRSIMGNPDLNSLVGGMQTVILGDAAAGAAHGGAKTR 122
Query: 368 LERKGPPTFTCAVEMISR 385
ER+G PTF C VE+ R
Sbjct: 123 TERRGEPTFRCLVEVQGR 140
>gi|325284450|ref|YP_004256990.1| AAA ATPase [Deinococcus proteolyticus MRP]
gi|324316514|gb|ADY27627.1| AAA ATPase [Deinococcus proteolyticus MRP]
Length = 316
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 156/293 (53%), Gaps = 28/293 (9%)
Query: 122 LGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDL----KHAISKV-GDFSDDNRSGID 176
L D+ E++MD G +PLA S V ++K+ + +H S V G + D R GI
Sbjct: 32 LTDVDEIIMDRG-QPLALRLSDLRVTYPYLLKNNEFDRIDQHMQSGVAGGWRKDGRIGIP 90
Query: 177 RSLHRISAIRNRKMQVIGLTCRVGRAVAGSAE----IICDLVEGGGSILVIGPPGVGKTT 232
+LHR+S N LT RVGRA+ G AE +I V+ I ++GPP VGKTT
Sbjct: 91 GTLHRLSREVNTAGITTKLTVRVGRALIGVAEPLRPVIVRAVQENSGIAIVGPPAVGKTT 150
Query: 233 LIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVE 292
L+R+IAR++A+ + +VI+DTSNEI GD D+PH IG+AR + V N Q +
Sbjct: 151 LLRDIARIMAERLAQGLVIIDTSNEIAGDSDIPHRIIGKARVVAVGNPLHQGEKFARVIG 210
Query: 293 NHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVT 352
N P+ ++ DEIG + A RGV + T HG + +V + +L L+G I
Sbjct: 211 NMGPQALLSDEIGYRDDIPIIRQNAPRGVSITATLHGKNMVRVVNSENLWPLLGVI---- 266
Query: 353 LGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAGK 405
++KV+ P F A+E+I R RVH DA+++AILAGK
Sbjct: 267 ------GRQKVE--------PSVFAQAIEVIGRGRYRVHEDFDASIEAILAGK 305
>gi|158421474|ref|YP_001527701.1| AAA ATPase [Deinococcus geothermalis DSM 11300]
gi|158342717|gb|ABW35003.1| AAA ATPase [Deinococcus geothermalis DSM 11300]
Length = 322
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 167/308 (54%), Gaps = 15/308 (4%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
E E L+LLP +R+ + L + E+ +D G+ + G + +++ ED+ +
Sbjct: 11 EYEAVLDLLPGDVRQLVEPRIHLVE--EIALDQGQNLKVKM-DGLRLEYRRLITREDMIY 67
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
++ G F +D R G+ +LHRISA + + + +T RV RA+ G AE + VE
Sbjct: 68 LTARAGKFREDGRRGLPGTLHRISADFDEEGIIDKVTVRVARAIEGVAEPLRAFVEQARG 127
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
I VIGPP VGKTTL+R+I R+ A+ +V++D+SNEI GDGDVPH + R RR +V +
Sbjct: 128 IAVIGPPAVGKTTLLRDITRIRAEVKSSGLVVIDSSNEITGDGDVPHPMLSRVRRFKVGD 187
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
Q + A+ NH PE I++DE+G + + + GV ++ T HG + ++++NP
Sbjct: 188 PEQQAPKLRRAIRNHGPEEILMDEVGYNGDVPLLVSAVRLGVTVIATMHGRVVKDVLRNP 247
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
L L+G V + DE + L ++ F A+E+ + + VH L+A
Sbjct: 248 PLLPLLG----VAI-DERTGE-------LIKRADTCFGMAIEVHGKGKYLVHEDLEAVTQ 295
Query: 400 AILAGKLP 407
A+L G+ P
Sbjct: 296 ALLCGEEP 303
>gi|313667305|ref|YP_004049706.1| AAA ATPase central domain protein [Oceanithermus profundus DSM
14977]
gi|313153936|gb|ADR37786.1| AAA ATPase central domain protein [Oceanithermus profundus DSM
14977]
Length = 345
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 140/254 (55%), Gaps = 12/254 (4%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDW----VISEQIV-KH 154
+LE ++ LP++ RR RE DL E + +GR PL GDW V E ++
Sbjct: 9 DLEALIQRLPAKFRRPF---REHPDLSEATLQIGR-PLT-VSWGDWERRFVEYEDLIPAR 63
Query: 155 EDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGS--AEIICD 212
ED++ + DD R+GID + HR+SAI +R ++G T RV R G+ + +
Sbjct: 64 EDIQRIAQQFAGIKDDGRAGIDGTAHRVSAIFDRMNNIVGFTVRVARHFPGALPESLKLE 123
Query: 213 LVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRA 272
L+ GS+L++G PG GKTTL+R +A AD + I+DTSNEIGG G+ P + A
Sbjct: 124 LLRSKGSVLIVGAPGSGKTTLLRAVAAAFADAIGPHLNIIDTSNEIGGVGETPIHELRHA 183
Query: 273 RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTI 332
R QVPN Q V+ A+ NH P +I+DE+G + A+RGVQ++ T HG I
Sbjct: 184 RWHQVPNPAKQPEVIRRAIANHGPLVLILDEVGYHGDVPEVEAAARRGVQVIATVHGYGI 243
Query: 333 DNIVKNPSLQILVG 346
++++N L+G
Sbjct: 244 FDVIENAHYSPLLG 257
>gi|260804927|ref|XP_002597339.1| hypothetical protein BRAFLDRAFT_66476 [Branchiostoma floridae]
gi|229282602|gb|EEN53351.1| hypothetical protein BRAFLDRAFT_66476 [Branchiostoma floridae]
Length = 2613
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 167/318 (52%), Gaps = 34/318 (10%)
Query: 124 DLIEVVMDLGRKPLARF-------------PSGDWVI-----SEQIVKHEDLKHAI---- 161
+L+EV +D+GR P+AR P ++ S+Q + E L+ +
Sbjct: 2291 NLVEVEIDIGRIPVARLDFHYQNKSSLYYNPDSPCLLATTRLSDQTLTRETLETILFGLP 2350
Query: 162 ---SKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGG 218
S +G R + +LH IS ++N +V+GLT R G+AV G +++ D+V G
Sbjct: 2351 LERSAIGQ----GRVLLKGTLHWISTLKNSSGEVVGLTLRRGQAVPGCLDLLWDVVTSGT 2406
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
S L++G P G+TTL+RE AR+L+D +RV++VDT EI G D+PH GIG ARR+QV
Sbjct: 2407 STLIMGCPCSGRTTLLREWARVLSDVCYRRVIVVDTLKEIAGGDDIPHPGIGGARRVQVH 2466
Query: 279 NVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKN 338
N Q S + A NH P+ II+DE+ T+ E A I G+Q+V + ++++N
Sbjct: 2467 NRCDQVSQLQTAARNHSPDCIIVDEVQTQEEVTALQAIRLTGIQVVAGVCAGCLTDLLQN 2526
Query: 339 PSLQILVGGIESV-TLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
++ L+G ++ T + V T + P F AV + SR V+ + +
Sbjct: 2527 SVMRGLLGLSDTASTFPQTPSTSESVPPTFPQTL--PVFQAAVVIHSRDMVSVYSDVASF 2584
Query: 398 VD-AILAGKL-PLFEVRQ 413
V ++L G+L PL + R+
Sbjct: 2585 VRVSLLEGRLFPLAQQRK 2602
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 91/139 (65%)
Query: 178 SLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREI 237
+LH +S ++N +V+GLT R G+AV G +++ D+V G S L++G P GKTTL+RE
Sbjct: 1513 TLHWVSTLKNSLGEVVGLTLRRGQAVPGCLDLLWDVVTSGTSTLIMGRPCSGKTTLLREW 1572
Query: 238 ARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPE 297
AR+L+D +RV++VDT NEI G D+PH GIG ARR+QV N Q + A NH P+
Sbjct: 1573 ARVLSDVCYRRVIVVDTRNEIAGGDDIPHPGIGGARRVQVHNRCDQVFQLQTAARNHSPD 1632
Query: 298 TIIIDEIGTELEALAASTI 316
II+DE+ T+ E A I
Sbjct: 1633 CIIVDEVQTQEEVTALQAI 1651
>gi|260804935|ref|XP_002597343.1| hypothetical protein BRAFLDRAFT_66479 [Branchiostoma floridae]
gi|229282606|gb|EEN53355.1| hypothetical protein BRAFLDRAFT_66479 [Branchiostoma floridae]
Length = 3045
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 162/317 (51%), Gaps = 33/317 (10%)
Query: 124 DLIEVVMDLGRKPLARF-------------PSGDWVI-----SEQIVKHEDLKHAI---- 161
+L+EV +D+GR P+AR P ++ S+Q + E L+ +
Sbjct: 2724 NLVEVEIDIGRIPVARLDFHYQNKSSLYYNPDSPCLLATTRLSDQTLTRETLETILFGLP 2783
Query: 162 ---SKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGG 218
S +G R + +LH IS ++N +V+GLT R G+AV G +++ D+V G
Sbjct: 2784 LERSAIGQ----GRVLLKGTLHWISTLKNSLGEVVGLTLRRGQAVPGCLDLLWDVVTSGT 2839
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
S L+IG P GKTTL+RE AR+L+D +RV++VDT EI G D+ H GIG ARR+QV
Sbjct: 2840 STLIIGRPCSGKTTLLREWARVLSDVCYRRVIVVDTLKEIAGGDDITHPGIGGARRVQVH 2899
Query: 279 NVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKN 338
N Q + A NH P+ II+DE+ T+ E A I G+Q+V + +++ N
Sbjct: 2900 NRCDQVFQLQTAARNHSPDFIIVDEVQTQEEVTALQAIRLTGIQVVAGVCAGCLPDLLHN 2959
Query: 339 PSLQILVGGIE-SVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
++ L+G + + T + V + P F AV + SR V+ + +
Sbjct: 2960 SVMRGLLGLSDPASTFPQTPSTSESVPPAFPQTL--PVFQAAVVIHSRDMVSVYSDVASF 3017
Query: 398 VD-AILAGKLPLFEVRQ 413
V ++L G+ PL + R+
Sbjct: 3018 VRVSLLEGRFPLAQQRK 3034
>gi|414865049|tpg|DAA43606.1| TPA: hypothetical protein ZEAMMB73_327805 [Zea mays]
Length = 209
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 120/206 (58%), Gaps = 12/206 (5%)
Query: 51 RKTFVSQKPTPP--SIHP--PTVRRPSDWAPPRNGSVSDSPNSASTSRSG-ADIELELFL 105
R+ + PTP HP RR W ++ T G + +L L
Sbjct: 7 RRLLLFSLPTPKLSPEHPLFRQRRRGRTWP-----GIARCATEVGTGWGGIVEDDLSELL 61
Query: 106 ELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF--PSGDWVISEQIVKHEDLKHAISK 163
++LP +R L L+EV++DLGR+P ARF SG + + + ++L+ A
Sbjct: 62 QILPRDLRDNLQNEPRKDQLLEVILDLGRRPEARFLGDSGGQYLRDSEISQKELEDAQKA 121
Query: 164 VGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVI 223
VG+F DNR+GI+ +LHRISAIR+RK V+GLTCRVGRAV G +++ DL+ SIL +
Sbjct: 122 VGEFGGDNRAGIEGTLHRISAIRSRKGMVVGLTCRVGRAVTGHVDMVRDLLNYKESILFL 181
Query: 224 GPPGVGKTTLIREIARMLADDHMKRV 249
G PGVGKTT++REIAR+LAD+ KRV
Sbjct: 182 GRPGVGKTTVMREIARVLADEFQKRV 207
>gi|326500622|dbj|BAJ94977.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 220
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 101/148 (68%), Gaps = 2/148 (1%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF--PSGDWVISEQIVKHEDLKHAIS 162
++LP +R L L+EV++DLGR+P ARF SG + + + +L+ A
Sbjct: 73 FQILPKDLRDNLQNEPRRDQLLEVILDLGRQPEARFLGNSGGQYLRDNEISQLELEEAQR 132
Query: 163 KVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILV 222
VG+F DNR+GI+ +LHRISAIR+RK V+GLTCRVGRAV G +++ DL+ SIL
Sbjct: 133 AVGEFGRDNRAGIEGTLHRISAIRSRKGLVVGLTCRVGRAVNGHVDMVRDLLNYKESILF 192
Query: 223 IGPPGVGKTTLIREIARMLADDHMKRVV 250
+G PGVGKTT++REIAR+LAD+ KRVV
Sbjct: 193 LGRPGVGKTTVMREIARVLADEFQKRVV 220
>gi|386854327|ref|YP_006258707.1| AAA ATPase [Deinococcus gobiensis I-0]
gi|380002656|gb|AFD27843.1| AAA ATPase [Deinococcus gobiensis I-0]
Length = 314
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 131/256 (51%), Gaps = 22/256 (8%)
Query: 165 GDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAE----IICDLVEGGGSI 220
G + D R GI +LHR+S N +T RVGRA+ G AE ++ D V I
Sbjct: 77 GGWRKDGRIGIPSTLHRLSRETNVSQLTSMITVRVGRALMGVAEPLRDVLYDAVTNEYGI 136
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNV 280
+IGPP GKTTL+R+IAR+LA+ +VI+DTSNEI GD D H +G+ARR+ V N
Sbjct: 137 AIIGPPAAGKTTLLRDIARILAERLGSGLVIIDTSNEIAGDSDHKHPIVGQARRVPVGNP 196
Query: 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPS 340
Q A+ N P+ ++ DEIG + + A RGV + T HG + + + +
Sbjct: 197 LWQGEKFARAIGNMGPKALLSDEIGYRDDIPVIAMNAPRGVSVTATLHGKNMRRVAHSQN 256
Query: 341 LQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDA 400
L ++G + V + P F A+E+ R RVH DA++ +
Sbjct: 257 LWPILGIKDGV------------------KTEPAVFKIAIEVPRRGFFRVHEDFDASLKS 298
Query: 401 ILAGKLPLFEVRQMDA 416
+LAG+ P +R++ A
Sbjct: 299 LLAGEEPTEGIREIRA 314
>gi|298714683|emb|CBJ27608.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 354
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 135/243 (55%), Gaps = 23/243 (9%)
Query: 161 ISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLV------ 214
+ +G F DN +G D LHR+ +R++ ++ G+T RVGR G A+++ DL+
Sbjct: 41 LEHLGLFGRDNMAGFDGLLHRVGVMRDKGGKIYGVTIRVGRYAKGMADMVDDLLFNHHTA 100
Query: 215 EGGG--------SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
G G SILV+G G GKTTL+R++ R L+ + VVIVDT ++IGG G VPH
Sbjct: 101 TGSGKRASQAPASILVLGRHGAGKTTLVRDMCRKLSSH--ETVVIVDTRSDIGGAGVVPH 158
Query: 267 S-GIGR-ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLV 324
IG +RR+ VP QH V+++A NH P+TI++DEI ++L+ A + RG+++V
Sbjct: 159 RRAIGEESRRVMVPQGMQQHEVILQAYRNHSPQTIVVDEISSQLDIEACMAVKARGIRVV 218
Query: 325 GTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERK-GPPTFTCAVEMI 383
A G + ++ +P + +GG+E + A +ER+ G P F VE+
Sbjct: 219 AGAVG-DLPYVLDSPEIGAALGGLEDIQ---RSANVDDDSDDQMERRAGSPVFEAVVELE 274
Query: 384 SRT 386
R
Sbjct: 275 GRA 277
>gi|323452315|gb|EGB08189.1| hypothetical protein AURANDRAFT_71632 [Aureococcus anophagefferens]
Length = 1677
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 161/325 (49%), Gaps = 31/325 (9%)
Query: 123 GDLIEVVMDLGRKPLARF----PSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRS 178
G L++V + GR P +F P+ V ++ EDL A + + + R+ +
Sbjct: 497 GALVDVKLAAGRPPRLQFGGANPAVVTVGGAPLLTAEDLARACAPLTFDAATERAALPGQ 556
Query: 179 LHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
LHR+S + +R V L+ RVGR VAG+A + D++ G S+L +G PG GK+T +R+ A
Sbjct: 557 LHRVSRVLHRG-AVAALSLRVGRHVAGAAHRLSDVLRRGESVLFLGAPGAGKSTALRDAA 615
Query: 239 RMLADDHMKR-----VVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293
++ + +VD S E+GGDG H+ + A R + H M+ + N
Sbjct: 616 ALVGAYRERHAPVGDCWVVDQSLELGGDGLAAHASLRPAERYPCQGEAL-HEAMLRVLRN 674
Query: 294 HMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGM----------TIDNIVKNPSLQI 343
H P I++DE+ ALAA+ + +RGVQL+ +AH ++ +V + +L
Sbjct: 675 HTPAAIVVDELVDRAAALAAADVGKRGVQLLASAHAWEKGATSAHARSLAELVDDAALAP 734
Query: 344 LVGGIESVTLGDEEAKKR-KVQ----KTILERKGPPTFTCAVEMISRT-----ECRVHHR 393
++G E VTL D EA +R K Q K +R TF C VE+ R+ E V
Sbjct: 735 VLGDFEIVTLSDREAARRAKTQRDPRKVRRQRVRNATFGCVVELRPRSPGRPGEWSVVLD 794
Query: 394 LDATVDAILAGKLPLFEVRQMDAEH 418
++A VDAI+ + R DA H
Sbjct: 795 VNAAVDAIVENGAYDAQARFYDAAH 819
>gi|397565678|gb|EJK44725.1| hypothetical protein THAOC_36714 [Thalassiosira oceanica]
Length = 579
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 144/293 (49%), Gaps = 66/293 (22%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQ---IVKHEDLKHAISKVGDFSDDNRSGIDRSLHR 181
+I++ +DLGR+P G +++ V+ + +K+ DF +DNR+GID LHR
Sbjct: 318 VIDISLDLGRRPYCWHNRGRAFLADDPAVKVQGFHIDAITAKLQDFGNDNRAGIDGQLHR 377
Query: 182 ISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARML 241
ISAIRN +IGLT R+GR + G+A+++CD+++G S+L++G ++ ++ E +
Sbjct: 378 ISAIRNNSKNIIGLTVRIGRHIEGNADMVCDIIDGNKSVLLLGESLSKQSEVMIECVQ-- 435
Query: 242 ADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIII 301
+H V+++D
Sbjct: 436 --NHTPSVMVID------------------------------------------------ 445
Query: 302 DEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKK- 360
EIG E AA T RGV+++ +AHG + +++KN ++ L+GG+E+ TLGD EAK+
Sbjct: 446 -EIGRRNEVEAAQTSKNRGVRMIASAHG-DLRSLLKNKEIRGLIGGLETTTLGDVEAKEL 503
Query: 361 ------RKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT--VDAILAGK 405
+ ++KT+ R P F +E+ H D+T VDAIL G+
Sbjct: 504 QKKTGSKTLEKTLTTRAAAPIFEVIIELKRGRLNEWHIVSDSTKAVDAILRGE 556
>gi|260804937|ref|XP_002597344.1| hypothetical protein BRAFLDRAFT_66480 [Branchiostoma floridae]
gi|229282607|gb|EEN53356.1| hypothetical protein BRAFLDRAFT_66480 [Branchiostoma floridae]
Length = 1910
Score = 119 bits (298), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 154/307 (50%), Gaps = 45/307 (14%)
Query: 122 LGDLIEVVMDLGRKPLARFPSGDW-------VISEQIVKHEDLKHAI-------SKVGDF 167
L +L+EV MD+GR P+ARF + + +S+Q + E L+ + S +G
Sbjct: 1623 LDNLVEVEMDIGRIPVARFYNPETPRMLAATRLSDQALTRETLETILFGLPLERSTIGQ- 1681
Query: 168 SDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPG 227
R + +LH IS ++N +V+GLT R G+AV G +++ D+V G S L++G P
Sbjct: 1682 ---GRVLLRGTLHWISTLKNSLGEVVGLTLRRGQAVPGCLDLLWDVVTSGTSTLIMGRPC 1738
Query: 228 VGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVM 287
GKTTL+RE AR+L+D +RV++VDT NE+ H+ + ++Q
Sbjct: 1739 SGKTTLLREWARVLSDVCYRRVIVVDTRNEV-------HNRCDQVSQLQT---------- 1781
Query: 288 IEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGG 347
A NH P+ II+DE+ T+ E A I G+Q+V + ++++N ++ L+G
Sbjct: 1782 --AARNHSPDCIIVDEVQTQEEVTALQAIRLTGIQVVAGVCAGCLTDLLQNSVMRGLLG- 1838
Query: 348 IESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD-AILAGKL 406
L D A + P F A+ + SR V+ + + V ++L G+
Sbjct: 1839 -----LSDPVASTSAPLGGTFPQT-LPVFQAAMVIHSRDMVSVYSDVASFVRVSLLEGRF 1892
Query: 407 PLFEVRQ 413
PL + R+
Sbjct: 1893 PLAQQRK 1899
>gi|105672147|gb|ABF74689.1| AAA [Lingulodinium polyedrum]
Length = 656
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 150/305 (49%), Gaps = 29/305 (9%)
Query: 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKP--LA----RFPSGDWVISEQIVKH 154
L+ + LPS +R++ L ++V+D+GR+P LA F D + +V
Sbjct: 326 LDELISALPSHLRQDFSGSVHL--CQQLVLDVGRRPQVLAGRRRAFLRAD---PDVVVSE 380
Query: 155 EDLKHAISKVGDFSDDNRS---GIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIIC 211
DL + ++ D RS + +L+R S + + + GLT VG AV G+A +I
Sbjct: 381 ADLSETMRRL--RLADGRSRLVPVGTTLNRASTLHDESGGLCGLTLHVGCAVLGAAGMIG 438
Query: 212 DLVEGG-GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIG 270
DL+ GS L++GP G GKTT+ R++AR+LA++ + V++VDT+ E+GG G V HS +G
Sbjct: 439 DLLAADLGSWLLLGPTGSGKTTVTRDVARLLAEE--RSVMVVDTARELGGAGVVAHSSLG 496
Query: 271 RARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHG- 329
ARR+ V + + + EA+ +H E +++D + + A+ + G LV +A G
Sbjct: 497 LARRLLVDSAEQHLAAVEEAILSHAAEVVVVDGMAVQSLISASRLAREHGACLVASAVGD 556
Query: 330 ---MTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRT 386
M + P G S + E R G P+FT AVE++
Sbjct: 557 FRSMAQAGVWGTPGTGQQSWGGLSASGHVEGCAARGFSG------GAPSFTAAVELLRAD 610
Query: 387 ECRVH 391
R H
Sbjct: 611 FHRCH 615
>gi|358346758|ref|XP_003637432.1| hypothetical protein MTR_085s0035 [Medicago truncatula]
gi|355503367|gb|AES84570.1| hypothetical protein MTR_085s0035 [Medicago truncatula]
Length = 111
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 78/104 (75%), Gaps = 3/104 (2%)
Query: 599 EEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRL 658
++VRLAIEYIVIPGGEAVELLPRRSEI+ RQ+ELV+SYQLAAE SGT+ N RLQILPLRL
Sbjct: 10 KKVRLAIEYIVIPGGEAVELLPRRSEIIDRQIELVQSYQLAAEKSGTDQNTRLQILPLRL 69
Query: 659 NKNKKSFSNSSNSGSTSPKETLGKSLTSSDA-GTSFTRLPFLPE 701
+ + S S+S + S T KS S GT+ TRLP LPE
Sbjct: 70 STKRSSKSSSVSRKKRS--STSEKSAGSDGGNGTTVTRLPILPE 111
>gi|297606843|ref|NP_001059076.2| Os07g0187400 [Oryza sativa Japonica Group]
gi|255677572|dbj|BAF20990.2| Os07g0187400, partial [Oryza sativa Japonica Group]
Length = 123
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 74/104 (71%), Gaps = 5/104 (4%)
Query: 599 EEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILPLRL 658
+E RLAIEYIVIPGGE VELLPR SEIVARQLELVESYQL AE GT+ N RLQILP+++
Sbjct: 24 QEARLAIEYIVIPGGEPVELLPRCSEIVARQLELVESYQLLAETFGTDSNSRLQILPVKI 83
Query: 659 NKNKKSFSNSSNSGSTSPKETLGKSLTSSD-AGTSFTRLPFLPE 701
K S S + PK+ + S + G+SF+RLPFLP+
Sbjct: 84 TKKSS----SKGSAGSMPKQGSSDLIVSDNGGGSSFSRLPFLPK 123
>gi|223949555|gb|ACN28861.1| unknown [Zea mays]
gi|414865050|tpg|DAA43607.1| TPA: hypothetical protein ZEAMMB73_327805 [Zea mays]
Length = 192
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 98/181 (54%), Gaps = 12/181 (6%)
Query: 51 RKTFVSQKPTPP--SIHP--PTVRRPSDWAPPRNGSVSDSPNSASTSRSG-ADIELELFL 105
R+ + PTP HP RR W ++ T G + +L L
Sbjct: 7 RRLLLFSLPTPKLSPEHPLFRQRRRGRTWP-----GIARCATEVGTGWGGIVEDDLSELL 61
Query: 106 ELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARF--PSGDWVISEQIVKHEDLKHAISK 163
++LP +R L L+EV++DLGR+P ARF SG + + + ++L+ A
Sbjct: 62 QILPRDLRDNLQNEPRKDQLLEVILDLGRRPEARFLGDSGGQYLRDSEISQKELEDAQKA 121
Query: 164 VGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVI 223
VG+F DNR+GI+ +LHRISAIR+RK V+GLTCRVGRAV G +++ DL+ SIL +
Sbjct: 122 VGEFGGDNRAGIEGTLHRISAIRSRKGMVVGLTCRVGRAVTGHVDMVRDLLNYKESILFL 181
Query: 224 G 224
G
Sbjct: 182 G 182
>gi|386854853|ref|YP_006262593.1| AAA ATPase [Deinococcus gobiensis I-0]
gi|380002330|gb|AFD27518.1| AAA ATPase [Deinococcus gobiensis I-0]
Length = 301
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 124/259 (47%), Gaps = 26/259 (10%)
Query: 155 EDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLV 214
ED+K + +G + DD R G++ +LHR + + Q +T RV +A G AE + +
Sbjct: 43 EDMK-VLDSLGAWRDDGRLGMEGTLHRFGRM-DTAQQTSLVTVRVAKAFVGLAEPLRPWL 100
Query: 215 EGG-GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRAR 273
E +++IG PG GKT L+R++ R+L + R+ + D+SNEI GDG PHS
Sbjct: 101 EKAQDGVIIIGLPGAGKTALLRDVNRILGERLAGRLFVCDSSNEILGDGIQPHSITDWLS 160
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R+ + + +Q S + V+N P +++DE+ + +A A RGV++V T H
Sbjct: 161 RVPIGDPKLQLSKLNMVVKNFQPRWMVVDEVSSPDDARAIGYARSRGVRVVMTWHA---- 216
Query: 334 NIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERK----GPPTFTCAVEMISRTECR 389
G + S +E+++R + I + GP + + R E
Sbjct: 217 ------------GSLASAY---QESEERTLWSLIKRNEEGITGPCVAQLGILVRGRGEYV 261
Query: 390 VHHRLDATVDAILAGKLPL 408
V L ++ AG LPL
Sbjct: 262 VFENLTEAFASVAAGNLPL 280
>gi|413937507|gb|AFW72058.1| hypothetical protein ZEAMMB73_092056 [Zea mays]
Length = 323
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%), Gaps = 4/77 (5%)
Query: 482 VYTYRILEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPV 541
VYTY+I EA +LQVA +MG +DE+DVT D+G AD I A+S EMKQN WI AK+H+LPV
Sbjct: 66 VYTYQISEAGILQVATMMGFDDELDVTYDVGAADVIHAASFEMKQNHWIHTAAKYHKLPV 125
Query: 542 FVIKSNTMAQMVKAVRM 558
K+N M Q VKA+RM
Sbjct: 126 ---KTNMMVQ-VKAIRM 138
>gi|253682298|ref|ZP_04863095.1| stage III sporulation protein AA [Clostridium botulinum D str.
1873]
gi|253562010|gb|EES91462.1| stage III sporulation protein AA [Clostridium botulinum D str.
1873]
Length = 298
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 127/258 (49%), Gaps = 24/258 (9%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
L +LP +R +L + + E+ + + +K L + +I + +VK ED+K + ++
Sbjct: 7 LYILPKELRAKLESIKNIDKFQEIRIKINKK-LILYVGNTEIILDYLVKKEDIKIILQRI 65
Query: 165 GDFS-----DDNRSGID--RSLHRI-----SAIRNRKMQVI----GLTCRVGRAVAGSAE 208
++S ++ + G + HR+ I N K++ I L R+ R V G +
Sbjct: 66 SNYSIYAFEEELKQGYITIKGGHRVGICGSCVIENEKVKTIKNIASLNIRICREVIGCSN 125
Query: 209 IICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGD-V 264
I + +L +I PP GKTTL+R+I+R L+D K++ IVD +EIG + V
Sbjct: 126 NIMPYILNDDRVLNTIIISPPKCGKTTLLRDISRNLSDAK-KKICIVDERSEIGACFEGV 184
Query: 265 PHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLV 324
P IG R V + ++ +I A+ + PE II DEIGT + + GV L+
Sbjct: 185 PQMNIGL--RTDVFDNCVKSQGIIMAIRSMAPEVIICDEIGTYKDMESIIMAMNSGVNLI 242
Query: 325 GTAHGMTIDNIVKNPSLQ 342
T HG I+++ + P +
Sbjct: 243 TTIHGFGIEDLYRRPVFK 260
>gi|331269432|ref|YP_004395924.1| stage III sporulation protein AA [Clostridium botulinum BKT015925]
gi|329125982|gb|AEB75927.1| stage III sporulation protein AA [Clostridium botulinum BKT015925]
Length = 319
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 133/275 (48%), Gaps = 24/275 (8%)
Query: 88 NSASTSRSGADIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVI 147
N + G + + L +LP +R +L + + L E+ + + +K L + +I
Sbjct: 11 NKILNKKGGYIMSTKDVLYILPKELRSKLESIKSVDKLQEIRIKINKK-LIVYIGNIEII 69
Query: 148 SEQIVKHEDLKHAISKVGDFS-----DDNRSGID--RSLHRI-----SAIRNRKMQVI-- 193
+ +VK ED+K + ++ ++S ++ + G + HR+ I N K++ I
Sbjct: 70 LDYLVKKEDIKVILQRISNYSIYAFEEEIKQGYITIKGGHRVGICGSCVIENEKVKTIKN 129
Query: 194 --GLTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMKR 248
L R+ R V G + I + + ++I PP GKTTLIR+I+R L+D K+
Sbjct: 130 IASLNIRICREVIGCSNNIMPYILNNSRVFNTIIISPPKCGKTTLIRDISRNLSDAK-KK 188
Query: 249 VVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307
+ IVD +E+G + VP +G R V + ++ +I A+ + PE I+ DEIGT
Sbjct: 189 ICIVDERSEVGACFEGVPQMNVGL--RTDVFDNCVKSEGIIMAIRSMAPEIIVCDEIGTY 246
Query: 308 LEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
+ + GV L+ T HG I+++ + P +
Sbjct: 247 KDMESIIMAMNSGVNLITTIHGFGIEDLYRRPVFK 281
>gi|229135016|ref|ZP_04263821.1| Stage III sporulation protein AA [Bacillus cereus BDRD-ST196]
gi|228648401|gb|EEL04431.1| Stage III sporulation protein AA [Bacillus cereus BDRD-ST196]
Length = 308
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 129/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP MR+ + ++ L E+ + +GR PL G+ + I ED H ++K+
Sbjct: 5 LEVLPKAMRQLVECCKQYDTLEEIRVRIGR-PLECIAHGEVFFYDYIATAEDAIHLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGV--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLQ 264
>gi|423470413|ref|ZP_17447157.1| stage III sporulation protein AA [Bacillus cereus BAG6O-2]
gi|423558227|ref|ZP_17534529.1| stage III sporulation protein AA [Bacillus cereus MC67]
gi|401191495|gb|EJQ98517.1| stage III sporulation protein AA [Bacillus cereus MC67]
gi|402436542|gb|EJV68572.1| stage III sporulation protein AA [Bacillus cereus BAG6O-2]
Length = 308
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 129/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP MR+ + ++ L E+ + +GR PL G+ + I ED H ++K+
Sbjct: 5 LEVLPKTMRQLVEGCKQYDALEEIRVRIGR-PLECIAHGEVFFYDYIATAEDAIHLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDVLIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLQ 264
>gi|152976597|ref|YP_001376114.1| sporulation stage III protein AA [Bacillus cytotoxicus NVH 391-98]
gi|152025349|gb|ABS23119.1| Sporulation stage III protein AA [Bacillus cytotoxicus NVH 391-98]
Length = 307
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 127/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP MR + +E L E+ + +GR PL G E IV ED H ++K+
Sbjct: 5 LEVLPKMMRELIEGCKEYNALEEIRVRIGR-PLECIAHGKVFFHEYIVTPEDAMHLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTIEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKMGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARML------ADDHMKRVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR + A+ +V IVD +EI
Sbjct: 123 EPLLSYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVGFANIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG ++ A
Sbjct: 183 GCVKGIPQYEFGP--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRMEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D+I K PSL+
Sbjct: 241 AGVQLFISAHGFSFDDIRKRPSLK 264
>gi|423521947|ref|ZP_17498420.1| stage III sporulation protein AA [Bacillus cereus HuA4-10]
gi|401176609|gb|EJQ83804.1| stage III sporulation protein AA [Bacillus cereus HuA4-10]
Length = 308
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 129/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP MR+ + ++ L E+ + +GR PL G+ + I ED H ++K+
Sbjct: 5 LEVLPKMMRQLVEGCKQYDALEEIRVRIGR-PLECIAHGEVFFYDYIATAEDAIHLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLQ 264
>gi|423457622|ref|ZP_17434419.1| stage III sporulation protein AA [Bacillus cereus BAG5X2-1]
gi|401148006|gb|EJQ55499.1| stage III sporulation protein AA [Bacillus cereus BAG5X2-1]
Length = 308
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 130/264 (49%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M+R + ++ L E+ + +GR PL G+ + IV ED + ++K+
Sbjct: 5 LEVLPKTMKRLVESCKQYDALEEIRVRIGR-PLECIAHGEVFFYDYIVTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGA--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLK 264
>gi|30264268|ref|NP_846645.1| stage III sporulation protein AA [Bacillus anthracis str. Ames]
gi|47529711|ref|YP_021060.1| stage III sporulation protein AA [Bacillus anthracis str. 'Ames
Ancestor']
gi|49187095|ref|YP_030347.1| stage III sporulation protein AA [Bacillus anthracis str. Sterne]
gi|49480626|ref|YP_038254.1| stage III sporulation protein AA [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|65321579|ref|ZP_00394538.1| COG3854: Uncharacterized protein conserved in bacteria [Bacillus
anthracis str. A2012]
gi|165872983|ref|ZP_02217605.1| stage III sporulation protein AA [Bacillus anthracis str. A0488]
gi|167634531|ref|ZP_02392851.1| stage III sporulation protein AA [Bacillus anthracis str. A0442]
gi|167638567|ref|ZP_02396843.1| stage III sporulation protein AA [Bacillus anthracis str. A0193]
gi|170687461|ref|ZP_02878678.1| stage III sporulation protein AA [Bacillus anthracis str. A0465]
gi|170709034|ref|ZP_02899464.1| stage III sporulation protein AA [Bacillus anthracis str. A0389]
gi|177654810|ref|ZP_02936567.1| stage III sporulation protein AA [Bacillus anthracis str. A0174]
gi|190566110|ref|ZP_03019029.1| stage III sporulation protein AA [Bacillus anthracis str.
Tsiankovskii-I]
gi|218905329|ref|YP_002453163.1| stage III sporulation protein AA [Bacillus cereus AH820]
gi|227816969|ref|YP_002816978.1| stage III sporulation protein AA [Bacillus anthracis str. CDC 684]
gi|228916829|ref|ZP_04080394.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228935516|ref|ZP_04098334.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947910|ref|ZP_04110197.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229123713|ref|ZP_04252908.1| Stage III sporulation protein AA [Bacillus cereus 95/8201]
gi|229602406|ref|YP_002868487.1| stage III sporulation protein AA [Bacillus anthracis str. A0248]
gi|254683957|ref|ZP_05147817.1| stage III sporulation protein AA [Bacillus anthracis str.
CNEVA-9066]
gi|254721792|ref|ZP_05183581.1| stage III sporulation protein AA [Bacillus anthracis str. A1055]
gi|254736305|ref|ZP_05194011.1| stage III sporulation protein AA [Bacillus anthracis str. Western
North America USA6153]
gi|254741343|ref|ZP_05199030.1| stage III sporulation protein AA [Bacillus anthracis str. Kruger B]
gi|254754023|ref|ZP_05206058.1| stage III sporulation protein AA [Bacillus anthracis str. Vollum]
gi|254757894|ref|ZP_05209921.1| stage III sporulation protein AA [Bacillus anthracis str. Australia
94]
gi|386738084|ref|YP_006211265.1| Stage III sporulation protein AA [Bacillus anthracis str. H9401]
gi|421506452|ref|ZP_15953375.1| stage III sporulation protein AA [Bacillus anthracis str. UR-1]
gi|421638274|ref|ZP_16078870.1| stage III sporulation protein AA [Bacillus anthracis str. BF1]
gi|30258913|gb|AAP28131.1| stage III sporulation protein AA [Bacillus anthracis str. Ames]
gi|47504859|gb|AAT33535.1| stage III sporulation protein AA [Bacillus anthracis str. 'Ames
Ancestor']
gi|49181022|gb|AAT56398.1| stage III sporulation protein AA [Bacillus anthracis str. Sterne]
gi|49332182|gb|AAT62828.1| stage III sporulation protein AA [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|164711266|gb|EDR16821.1| stage III sporulation protein AA [Bacillus anthracis str. A0488]
gi|167513415|gb|EDR88785.1| stage III sporulation protein AA [Bacillus anthracis str. A0193]
gi|167529983|gb|EDR92718.1| stage III sporulation protein AA [Bacillus anthracis str. A0442]
gi|170126061|gb|EDS94958.1| stage III sporulation protein AA [Bacillus anthracis str. A0389]
gi|170668656|gb|EDT19402.1| stage III sporulation protein AA [Bacillus anthracis str. A0465]
gi|172080471|gb|EDT65557.1| stage III sporulation protein AA [Bacillus anthracis str. A0174]
gi|190563029|gb|EDV16995.1| stage III sporulation protein AA [Bacillus anthracis str.
Tsiankovskii-I]
gi|218535151|gb|ACK87549.1| stage III sporulation protein AA [Bacillus cereus AH820]
gi|227007321|gb|ACP17064.1| stage III sporulation protein AA [Bacillus anthracis str. CDC 684]
gi|228659848|gb|EEL15493.1| Stage III sporulation protein AA [Bacillus cereus 95/8201]
gi|228811897|gb|EEM58231.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228824268|gb|EEM70082.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228843016|gb|EEM88099.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229266814|gb|ACQ48451.1| stage III sporulation protein AA [Bacillus anthracis str. A0248]
gi|384387936|gb|AFH85597.1| Stage III sporulation protein AA [Bacillus anthracis str. H9401]
gi|401823445|gb|EJT22592.1| stage III sporulation protein AA [Bacillus anthracis str. UR-1]
gi|403394700|gb|EJY91940.1| stage III sporulation protein AA [Bacillus anthracis str. BF1]
Length = 308
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 130/264 (49%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + IV ED H ++K+
Sbjct: 5 LEVLPKTMKQLVESCKQYDALEEIRVRIGR-PLECIAHGEVFFYDYIVTAEDAIHLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASEIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLK 264
>gi|163941952|ref|YP_001646836.1| sporulation stage III protein AA [Bacillus weihenstephanensis
KBAB4]
gi|423518898|ref|ZP_17495379.1| stage III sporulation protein AA [Bacillus cereus HuA2-4]
gi|423669780|ref|ZP_17644809.1| stage III sporulation protein AA [Bacillus cereus VDM034]
gi|163864149|gb|ABY45208.1| Sporulation stage III protein AA [Bacillus weihenstephanensis
KBAB4]
gi|401159953|gb|EJQ67332.1| stage III sporulation protein AA [Bacillus cereus HuA2-4]
gi|401298907|gb|EJS04507.1| stage III sporulation protein AA [Bacillus cereus VDM034]
Length = 308
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 129/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP MR+ + ++ L E+ + +GR PL G+ + I ED H ++K+
Sbjct: 5 LEVLPKAMRQLVEGCKQYDTLEEIRVRIGR-PLECIAHGEVFFYDYIATAEDAIHLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGV--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLQ 264
>gi|196034946|ref|ZP_03102353.1| stage III sporulation protein AA [Bacillus cereus W]
gi|195992485|gb|EDX56446.1| stage III sporulation protein AA [Bacillus cereus W]
Length = 308
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 130/264 (49%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + IV ED H ++K+
Sbjct: 5 LEVLPKTMKQLVESCKQYDALEEIRVRIGR-PLECIAHGEVFFYDYIVTAEDAIHLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASEIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLK 264
>gi|228929239|ref|ZP_04092266.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228830529|gb|EEM76139.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 308
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 130/264 (49%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + IV ED H ++K+
Sbjct: 5 LEVLPKTMKQLVESCKQYDALEEIRVRIGR-PLECIAHGEVFFYDYIVTAEDAIHLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASEIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLK 264
>gi|423452500|ref|ZP_17429353.1| stage III sporulation protein AA [Bacillus cereus BAG5X1-1]
gi|401140138|gb|EJQ47695.1| stage III sporulation protein AA [Bacillus cereus BAG5X1-1]
Length = 308
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 129/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED H ++K+
Sbjct: 5 LEVLPKTMKQLVEGCKQYDTLEEIRVRIGR-PLECIAHGEVFFYDYIATAEDAIHLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYETRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGA--RVDVLDACPKAEGMMMMIRSMSPDVLIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLQ 264
>gi|423612416|ref|ZP_17588277.1| stage III sporulation protein AA [Bacillus cereus VD107]
gi|401246005|gb|EJR52357.1| stage III sporulation protein AA [Bacillus cereus VD107]
Length = 308
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 143/300 (47%), Gaps = 31/300 (10%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED H ++K+
Sbjct: 5 LEVLPKTMKQLVEGCKQYDVLEEIRVRIGR-PLECIAHGEVFFYDYIATAEDAIHLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASEIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ-ILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFT 377
GVQL +AHG + D++VK PSLQ +L G+ + +A+ + +R G P T
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLQAVLELGVFDRFVELSKARGPGTVMQVKDRDGKPVLT 300
>gi|229013411|ref|ZP_04170548.1| Stage III sporulation protein AA [Bacillus mycoides DSM 2048]
gi|423368248|ref|ZP_17345680.1| stage III sporulation protein AA [Bacillus cereus VD142]
gi|423512308|ref|ZP_17488839.1| stage III sporulation protein AA [Bacillus cereus HuA2-1]
gi|423660956|ref|ZP_17636125.1| stage III sporulation protein AA [Bacillus cereus VDM022]
gi|423674015|ref|ZP_17648954.1| stage III sporulation protein AA [Bacillus cereus VDM062]
gi|228747823|gb|EEL97689.1| Stage III sporulation protein AA [Bacillus mycoides DSM 2048]
gi|401080999|gb|EJP89279.1| stage III sporulation protein AA [Bacillus cereus VD142]
gi|401300997|gb|EJS06586.1| stage III sporulation protein AA [Bacillus cereus VDM022]
gi|401309566|gb|EJS14899.1| stage III sporulation protein AA [Bacillus cereus VDM062]
gi|402449279|gb|EJV81116.1| stage III sporulation protein AA [Bacillus cereus HuA2-1]
Length = 308
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 129/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED H ++K+
Sbjct: 5 LEVLPKTMKQLVEGCKQYDTLEEIRVRIGR-PLECIAHGEVFFYDYIATAEDAIHLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGV--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLQ 264
>gi|423622719|ref|ZP_17598497.1| stage III sporulation protein AA [Bacillus cereus VD148]
gi|401260839|gb|EJR67007.1| stage III sporulation protein AA [Bacillus cereus VD148]
Length = 308
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 126/263 (47%), Gaps = 28/263 (10%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED + ++K+
Sbjct: 5 LEVLPKMMKQLVESCKQYNTLEEIRVRIGR-PLECIAHGEVFFYDYIATAEDASYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRIS---------AIRNRKMQVIGLTCRVGRAVAGSAE 208
FS ++ + G R HRI +I V R+ R G AE
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSIVKMIRDVSSFNIRIARQKIGIAE 123
Query: 209 -IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGG 260
++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI G
Sbjct: 124 PLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVGTSKIPSCKVGIVDERSEIAG 183
Query: 261 D-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
+P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 184 CVKGIPQYEFGT--RVDVLDACPKAEGMMMMIRSMSPDVLIVDEIGRKEDSEAIMEAVHA 241
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 242 GVQLFISAHGFSYDDVVKRPSLQ 264
>gi|423489380|ref|ZP_17466062.1| stage III sporulation protein AA [Bacillus cereus BtB2-4]
gi|423495103|ref|ZP_17471747.1| stage III sporulation protein AA [Bacillus cereus CER057]
gi|423498103|ref|ZP_17474720.1| stage III sporulation protein AA [Bacillus cereus CER074]
gi|423598486|ref|ZP_17574486.1| stage III sporulation protein AA [Bacillus cereus VD078]
gi|401151196|gb|EJQ58648.1| stage III sporulation protein AA [Bacillus cereus CER057]
gi|401161390|gb|EJQ68757.1| stage III sporulation protein AA [Bacillus cereus CER074]
gi|401236756|gb|EJR43213.1| stage III sporulation protein AA [Bacillus cereus VD078]
gi|402431616|gb|EJV63680.1| stage III sporulation protein AA [Bacillus cereus BtB2-4]
Length = 308
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 129/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED H ++K+
Sbjct: 5 LEVLPKTMKQLVEGCKQYDTLEEIRVRIGR-PLECIAHGEVFFYDYIATAEDAIHLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGISASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGV--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLQ 264
>gi|229174870|ref|ZP_04302390.1| Stage III sporulation protein AA [Bacillus cereus MM3]
gi|228608538|gb|EEK65840.1| Stage III sporulation protein AA [Bacillus cereus MM3]
Length = 308
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 130/264 (49%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + IV ED + ++K+
Sbjct: 5 LEVLPKTMKQLVESCKQYDALEEIRVRIGR-PLECIAHGEVFFYDYIVTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLK 264
>gi|52141303|ref|YP_085526.1| stage III sporulation protein AA [Bacillus cereus E33L]
gi|118479384|ref|YP_896535.1| stage III sporulation protein AA [Bacillus thuringiensis str. Al
Hakam]
gi|196046314|ref|ZP_03113540.1| stage III sporulation protein AA [Bacillus cereus 03BB108]
gi|225866175|ref|YP_002751553.1| stage III sporulation protein AA [Bacillus cereus 03BB102]
gi|229186436|ref|ZP_04313600.1| Stage III sporulation protein AA [Bacillus cereus BGSC 6E1]
gi|301055686|ref|YP_003793897.1| stage III sporulation protein AA [Bacillus cereus biovar anthracis
str. CI]
gi|376268091|ref|YP_005120803.1| Stage III sporulation protein AA [Bacillus cereus F837/76]
gi|51974772|gb|AAU16322.1| stage III sporulation protein AA [Bacillus cereus E33L]
gi|118418609|gb|ABK87028.1| stage III sporulation protein AA [Bacillus thuringiensis str. Al
Hakam]
gi|196022784|gb|EDX61465.1| stage III sporulation protein AA [Bacillus cereus 03BB108]
gi|225790306|gb|ACO30523.1| stage III sporulation protein AA [Bacillus cereus 03BB102]
gi|228597063|gb|EEK54719.1| Stage III sporulation protein AA [Bacillus cereus BGSC 6E1]
gi|300377855|gb|ADK06759.1| stage III sporulation protein AA [Bacillus cereus biovar anthracis
str. CI]
gi|364513891|gb|AEW57290.1| Stage III sporulation protein AA [Bacillus cereus F837/76]
Length = 308
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 130/264 (49%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + IV ED + ++K+
Sbjct: 5 LEVLPKTMKQLVESCKQYDALEEIRVRIGR-PLECIAHGEVFFYDYIVTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLK 264
>gi|229104823|ref|ZP_04235483.1| Stage III sporulation protein AA [Bacillus cereus Rock3-28]
gi|228678540|gb|EEL32757.1| Stage III sporulation protein AA [Bacillus cereus Rock3-28]
Length = 308
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 130/266 (48%), Gaps = 28/266 (10%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED + ++K+
Sbjct: 5 LEVLPKTMKQLVESCKQYNTLEEIRVRIGR-PLECIAHGEVFFYDYIATAEDASYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRIS----AIRNR---KM--QVIGLTCRVGRAVAGSAE 208
FS ++ + G R HRI I + KM V R+ R G AE
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSTVKMIRDVSSFNIRIARQKIGIAE 123
Query: 209 -IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGG 260
++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI G
Sbjct: 124 PLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVGTSKIPSCKVGIVDERSEIAG 183
Query: 261 D-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
+P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 184 CVKGIPQYEFGT--RVDVLDACPKAEGMMMMIRSMSPDVLIVDEIGRKEDSEAIMEAVHA 241
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQILV 345
GVQL +AHG + D++VK PSLQ ++
Sbjct: 242 GVQLFISAHGFSYDDVVKRPSLQAVL 267
>gi|407706722|ref|YP_006830307.1| stage IV sporulation YqfD [Bacillus thuringiensis MC28]
gi|407384407|gb|AFU14908.1| Stage III sporulation protein AA [Bacillus thuringiensis MC28]
Length = 308
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 28/263 (10%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED + ++K+
Sbjct: 5 LEVLPKTMKQLVESCKQYNTLEEIRVRIGR-PLECIAHGEVFFYDYIATAEDASYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRIS----AIRNR---KM--QVIGLTCRVGRAVAGSAE 208
FS ++ + G R HRI I + KM V R+ R G AE
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSTVKMIRDVSSFNIRIARQKIGIAE 123
Query: 209 -IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGG 260
++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI G
Sbjct: 124 PLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVGTSKIPSCKVGIVDERSEIAG 183
Query: 261 D-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
+P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 184 CVKGIPQYEFGT--RVDVLDACPKAEGMMMMIRSMSPDVLIVDEIGRKEDSEAIMEAVHA 241
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 242 GVQLFISAHGFSYDDVVKRPSLQ 264
>gi|153938479|ref|YP_001391217.1| stage III sporulation protein AA [Clostridium botulinum F str.
Langeland]
gi|384462236|ref|YP_005674831.1| stage III sporulation protein AA [Clostridium botulinum F str.
230613]
gi|152934375|gb|ABS39873.1| stage III sporulation protein AA [Clostridium botulinum F str.
Langeland]
gi|295319253|gb|ADF99630.1| stage III sporulation protein AA [Clostridium botulinum F str.
230613]
Length = 307
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 134/270 (49%), Gaps = 29/270 (10%)
Query: 102 ELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAI 161
E L +LPS + R +C EL L E+ + +G+ + + + + S + VK ED+K +
Sbjct: 4 EEILNILPSHISRLICDLDELDKLQEIRLKIGKPIFFQIGNIEKLASYE-VKREDIKSIV 62
Query: 162 SKVGDFS-----DDNRSGI--DRSLHRI-----SAIRNRKMQVI----GLTCRVGRAVAG 205
++ ++S ++ + G + HR+ I K++ I L R+ R +
Sbjct: 63 QRMSNYSIYSFEEEIKQGYLTIKGGHRVGICGRCVIDEGKVKTIRDISSLNIRICREIYN 122
Query: 206 SAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLAD--DHM----KRVVIVDTSN 256
+++++ + G +L +I PP GKTT+IR+I++ ++D D + K+V ++D +
Sbjct: 123 ASKLVMPYIVENGHVLNTIIISPPKCGKTTIIRDISKKISDGVDALNLKGKKVSVIDERS 182
Query: 257 EIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST 315
EI G + VP +G R V + + ++ A+ + PE II DEIGT + +
Sbjct: 183 EIAGSYNGVPQLDVGL--RTDVLDNCPKSEGIVMAIRSMAPEVIICDEIGTYNDVESILI 240
Query: 316 IAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
GV L+ T HG ++NI P + +V
Sbjct: 241 ALNSGVSLITTIHGFGVENIYNRPVFKEIV 270
>gi|423550060|ref|ZP_17526387.1| stage III sporulation protein AA [Bacillus cereus ISP3191]
gi|401189676|gb|EJQ96726.1| stage III sporulation protein AA [Bacillus cereus ISP3191]
Length = 308
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 130/264 (49%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + IV ED + ++K+
Sbjct: 5 LEVLPKTMKQLVESCKQYDALEEIRVRIGR-PLECIAHGEVFFYDYIVTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLK 264
>gi|423400957|ref|ZP_17378130.1| stage III sporulation protein AA [Bacillus cereus BAG2X1-2]
gi|423478338|ref|ZP_17455053.1| stage III sporulation protein AA [Bacillus cereus BAG6X1-1]
gi|401653947|gb|EJS71490.1| stage III sporulation protein AA [Bacillus cereus BAG2X1-2]
gi|402428500|gb|EJV60597.1| stage III sporulation protein AA [Bacillus cereus BAG6X1-1]
Length = 308
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 130/264 (49%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + +V ED + ++K+
Sbjct: 5 LEVLPKTMKQLVESCKQYDALEEIRVRIGR-PLECIAHGEVFFYDYVVTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGA--RVDVLDACPKAEGMMMMIRSMSPDVLIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLK 264
>gi|229168937|ref|ZP_04296654.1| Stage III sporulation protein AA [Bacillus cereus AH621]
gi|228614529|gb|EEK71637.1| Stage III sporulation protein AA [Bacillus cereus AH621]
Length = 308
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 28/263 (10%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED H ++K+
Sbjct: 5 LEVLPKTMKQLVEGCKQYDTLEEIRVRIGR-PLECIAHGEVFFYDYIATAEDTIHLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRIS----AIRNR---KM--QVIGLTCRVGRAVAGSAE 208
FS ++ + G R HRI I + KM V R+ R G AE
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSTVKMIRDVSSFNIRIARQKIGIAE 123
Query: 209 -IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGG 260
++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI G
Sbjct: 124 PLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIAG 183
Query: 261 D-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
+P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 184 CVKGIPQYDFGV--RVDVLDACPKAEGMMMMIRSMSPDVLIVDEIGRKEDSEAIMEAVHA 241
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 242 GVQLFISAHGFSYDDVVKRPSLQ 264
>gi|229075902|ref|ZP_04208878.1| Stage III sporulation protein AA [Bacillus cereus Rock4-18]
gi|229098666|ref|ZP_04229606.1| Stage III sporulation protein AA [Bacillus cereus Rock3-29]
gi|229117691|ref|ZP_04247061.1| Stage III sporulation protein AA [Bacillus cereus Rock1-3]
gi|423377947|ref|ZP_17355231.1| stage III sporulation protein AA [Bacillus cereus BAG1O-2]
gi|423441067|ref|ZP_17417973.1| stage III sporulation protein AA [Bacillus cereus BAG4X2-1]
gi|423464141|ref|ZP_17440909.1| stage III sporulation protein AA [Bacillus cereus BAG6O-1]
gi|423533483|ref|ZP_17509901.1| stage III sporulation protein AA [Bacillus cereus HuB2-9]
gi|423547498|ref|ZP_17523856.1| stage III sporulation protein AA [Bacillus cereus HuB5-5]
gi|228665783|gb|EEL21255.1| Stage III sporulation protein AA [Bacillus cereus Rock1-3]
gi|228684745|gb|EEL38683.1| Stage III sporulation protein AA [Bacillus cereus Rock3-29]
gi|228707217|gb|EEL59414.1| Stage III sporulation protein AA [Bacillus cereus Rock4-18]
gi|401179219|gb|EJQ86392.1| stage III sporulation protein AA [Bacillus cereus HuB5-5]
gi|401636213|gb|EJS53967.1| stage III sporulation protein AA [Bacillus cereus BAG1O-2]
gi|402417728|gb|EJV50028.1| stage III sporulation protein AA [Bacillus cereus BAG4X2-1]
gi|402420408|gb|EJV52679.1| stage III sporulation protein AA [Bacillus cereus BAG6O-1]
gi|402463702|gb|EJV95402.1| stage III sporulation protein AA [Bacillus cereus HuB2-9]
Length = 308
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 28/263 (10%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED + ++K+
Sbjct: 5 LEVLPKMMKQLVESCKQYNTLEEIRVRIGR-PLECIAHGEVFFYDYIATAEDASYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRIS----AIRNR---KM--QVIGLTCRVGRAVAGSAE 208
FS ++ + G R HRI I + KM V R+ R G AE
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSTVKMIRDVSSFNIRIARQKIGIAE 123
Query: 209 -IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGG 260
++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI G
Sbjct: 124 PLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVGTSKIPSCKVGIVDERSEIAG 183
Query: 261 D-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
+P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 184 CVKGIPQYEFGT--RVDVLDACPKAEGMMMMIRSMSPDVLIVDEIGRKEDSEAIMEAVHA 241
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 242 GVQLFISAHGFSYDDVVKRPSLQ 264
>gi|423591808|ref|ZP_17567839.1| stage III sporulation protein AA [Bacillus cereus VD048]
gi|401231941|gb|EJR38443.1| stage III sporulation protein AA [Bacillus cereus VD048]
Length = 308
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 28/263 (10%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED H ++K+
Sbjct: 5 LEVLPKTMKQLVEGCKQYDTLEEIRVRIGR-PLECIAHGEVFFYDYIATAEDAIHLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRIS----AIRNR---KM--QVIGLTCRVGRAVAGSAE 208
FS ++ + G R HRI I + KM V R+ R G AE
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSTVKMIRDVSSFNIRIARQKIGIAE 123
Query: 209 -IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGG 260
++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI G
Sbjct: 124 PLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIAG 183
Query: 261 D-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
+P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 184 CVKGIPQYDFGV--RVDVLDACPKAEGMMMMIRSMSPDVLIVDEIGRKEDSEAIMEAVHA 241
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 242 GVQLFISAHGFSYDDVVKRPSLQ 264
>gi|423448777|ref|ZP_17425656.1| stage III sporulation protein AA [Bacillus cereus BAG5O-1]
gi|401129371|gb|EJQ37054.1| stage III sporulation protein AA [Bacillus cereus BAG5O-1]
Length = 308
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 28/263 (10%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED + ++K+
Sbjct: 5 LEVLPKMMKQLVESCKQYNTLEEIRVRIGR-PLECIAHGEVCFYDYIATAEDASYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRIS----AIRNR---KM--QVIGLTCRVGRAVAGSAE 208
FS ++ + G R HRI I + KM V R+ R G AE
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSTVKMIRDVSSFNIRIARQKIGIAE 123
Query: 209 -IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGG 260
++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI G
Sbjct: 124 PLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVGTSKIPSCKVGIVDERSEIAG 183
Query: 261 D-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
+P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 184 CVKGIPQYEFGT--RVDVLDACPKAEGMMMMIRSMSPDVLIVDEIGRKEDSEAIMEAVHA 241
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 242 GVQLFISAHGFSYDDVVKRPSLQ 264
>gi|229031842|ref|ZP_04187830.1| Stage III sporulation protein AA [Bacillus cereus AH1271]
gi|228729460|gb|EEL80449.1| Stage III sporulation protein AA [Bacillus cereus AH1271]
Length = 308
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 130/264 (49%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + +V ED + ++K+
Sbjct: 5 LEVLPKTMKQLVESCKQYDALEEIRVRIGR-PLECIAHGEVFFYDYVVTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASNIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLK 264
>gi|229061884|ref|ZP_04199213.1| Stage III sporulation protein AA [Bacillus cereus AH603]
gi|228717397|gb|EEL69066.1| Stage III sporulation protein AA [Bacillus cereus AH603]
Length = 308
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 28/263 (10%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED H ++K+
Sbjct: 5 LEVLPKTMKQLVEGCKQYDTLEEIRVRIGR-PLECIAHGEVFFYDYIATAEDAIHLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRIS----AIRNR---KM--QVIGLTCRVGRAVAGSAE 208
FS ++ + G R HRI I + KM V R+ R G AE
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSTVKMIRDVSSFNIRIARQKIGIAE 123
Query: 209 -IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGG 260
++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI G
Sbjct: 124 PLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIAG 183
Query: 261 D-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
+P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 184 CVKGIPQYDFGV--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVHA 241
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 242 GVQLFISAHGFSYDDVVKRPSLQ 264
>gi|196041563|ref|ZP_03108855.1| stage III sporulation protein AA [Bacillus cereus NVH0597-99]
gi|196027551|gb|EDX66166.1| stage III sporulation protein AA [Bacillus cereus NVH0597-99]
Length = 308
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 130/264 (49%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + IV ED + ++K+
Sbjct: 5 LEVLPKTMKQLVESCKQCDALEEIRVRIGR-PLECIAHGEVFFYDYIVTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAILEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLK 264
>gi|423483786|ref|ZP_17460476.1| stage III sporulation protein AA [Bacillus cereus BAG6X1-2]
gi|401141337|gb|EJQ48892.1| stage III sporulation protein AA [Bacillus cereus BAG6X1-2]
Length = 308
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 128/263 (48%), Gaps = 28/263 (10%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED H ++K+
Sbjct: 5 LEVLPKTMKQLVEGCKQYDALEEIRVRIGR-PLECIAHGEVFFYDYIATAEDAIHLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRIS----AIRNR---KM--QVIGLTCRVGRAVAGSAE 208
FS ++ + G R HRI I + KM V R+ R G AE
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSEVKMIRDVSSFNIRIARQKIGIAE 123
Query: 209 -IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADD------HMKRVVIVDTSNEIGG 260
++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI G
Sbjct: 124 PLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSRGVSASKISSCKVGIVDERSEIAG 183
Query: 261 D-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
+P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 184 CVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDVLIVDEIGRKEDSEAIMEAVHA 241
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 242 GVQLFISAHGFSYDDVVKRPSLQ 264
>gi|423417881|ref|ZP_17394970.1| stage III sporulation protein AA [Bacillus cereus BAG3X2-1]
gi|401107052|gb|EJQ15009.1| stage III sporulation protein AA [Bacillus cereus BAG3X2-1]
Length = 308
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 129/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED + ++K+
Sbjct: 5 LEVLPKTMKQLVEGCKQYDALEEIRVRIGR-PLECIAHGEVFFYDYIATAEDALYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLQ 264
>gi|423541261|ref|ZP_17517652.1| stage III sporulation protein AA [Bacillus cereus HuB4-10]
gi|401172449|gb|EJQ79670.1| stage III sporulation protein AA [Bacillus cereus HuB4-10]
Length = 308
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 127/263 (48%), Gaps = 28/263 (10%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED + ++K+
Sbjct: 5 LEVLPKMMKQLVESCKQYNTLEEIRVRIGR-PLECIAHGEVFFYDYIATAEDASYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRIS----AIRNR---KM--QVIGLTCRVGRAVAGSAE 208
FS ++ + G R HRI I + KM V R+ R G AE
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSTVKMIRDVSSFNIRIARQKIGIAE 123
Query: 209 -IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGG 260
++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI G
Sbjct: 124 PLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVGTSKIPSCKVGIVDERSEIAG 183
Query: 261 D-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
+P G R+ V + + M+ + + P+ +I+DEIG + + A
Sbjct: 184 CVKGIPQYEFGT--RVDVLDACPKAEGMMMMIRSMSPDVLIVDEIGRKEDTEAIMEAVHA 241
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSLQ
Sbjct: 242 GVQLFISAHGFSYDDVVKRPSLQ 264
>gi|118444024|ref|YP_878042.1| stage III sporulation protein AA [Clostridium novyi NT]
gi|118134480|gb|ABK61524.1| stage III sporulation protein AA, SpoIIIAA [Clostridium novyi NT]
Length = 298
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 124/253 (49%), Gaps = 24/253 (9%)
Query: 107 LLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGD 166
+LP M+ +L + L E+ + + KPL + +I + I+K ED+K + ++ +
Sbjct: 9 VLPKEMQMKLQSITIIDKLQEIRIKVN-KPLIVYLENKEIILDYIIKKEDIKTILQRISN 67
Query: 167 FS-----DDNRSGID--RSLHRI-----SAIRNRKMQVI----GLTCRVGRAVAGSAEII 210
+S ++ + G + HR+ I+N ++ I L R+ R V G + +
Sbjct: 68 YSIYAFEEEIKQGYITIKGGHRVGICGSCVIQNETVKTIKNIASLNIRICREVLGCSNKV 127
Query: 211 CDLVEGGGSIL---VIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGD-VPH 266
+ G ++L +I PP GKTTLIR+I R L+ K+V I+D +EI + VP
Sbjct: 128 MPYILQGENVLNTIIISPPKCGKTTLIRDITRNLSTAK-KKVCIIDERSEIASCFEGVPQ 186
Query: 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
+G R + + ++ +I A+ + PE I+ DEIGT + + GV L+ T
Sbjct: 187 MDVGI--RTDILDNCIKSQGIIMAIRSMAPEVIVCDEIGTHSDIQSIVMAMNSGVNLITT 244
Query: 327 AHGMTIDNIVKNP 339
HG I+++ + P
Sbjct: 245 IHGFGIEDLYRRP 257
>gi|423604153|ref|ZP_17580046.1| stage III sporulation protein AA [Bacillus cereus VD102]
gi|401245839|gb|EJR52192.1| stage III sporulation protein AA [Bacillus cereus VD102]
Length = 308
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 129/263 (49%), Gaps = 28/263 (10%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + IV ED + ++K+
Sbjct: 5 LEVLPKTMKQLVENCKQYDALEEIRVRIGR-PLECIAQGEVFFYDYIVTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRIS----AIRNR---KM--QVIGLTCRVGRAVAGSAE 208
FS ++ + G R HRI I + KM V R+ R G AE
Sbjct: 64 SHFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSTVKMIRDVSSFNIRIARQKIGIAE 123
Query: 209 -IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGG 260
++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI G
Sbjct: 124 PLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIAG 183
Query: 261 D-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
+P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 184 CVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVHA 241
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 242 GVQLFISAHGFSYDDVVKRPSLK 264
>gi|206976251|ref|ZP_03237159.1| stage III sporulation protein AA [Bacillus cereus H3081.97]
gi|217961683|ref|YP_002340253.1| stage III sporulation protein AA [Bacillus cereus AH187]
gi|222097640|ref|YP_002531697.1| stage III sporulation protein aa [Bacillus cereus Q1]
gi|229140927|ref|ZP_04269471.1| Stage III sporulation protein AA [Bacillus cereus BDRD-ST26]
gi|229198320|ref|ZP_04325027.1| Stage III sporulation protein AA [Bacillus cereus m1293]
gi|375286201|ref|YP_005106640.1| stage III sporulation protein AA [Bacillus cereus NC7401]
gi|402555673|ref|YP_006596944.1| stage III sporulation protein AA [Bacillus cereus FRI-35]
gi|423354691|ref|ZP_17332316.1| stage III sporulation protein AA [Bacillus cereus IS075]
gi|423373988|ref|ZP_17351327.1| stage III sporulation protein AA [Bacillus cereus AND1407]
gi|423566844|ref|ZP_17543091.1| stage III sporulation protein AA [Bacillus cereus MSX-A12]
gi|423574120|ref|ZP_17550239.1| stage III sporulation protein AA [Bacillus cereus MSX-D12]
gi|206745447|gb|EDZ56846.1| stage III sporulation protein AA [Bacillus cereus H3081.97]
gi|217064201|gb|ACJ78451.1| stage III sporulation protein AA [Bacillus cereus AH187]
gi|221241698|gb|ACM14408.1| stage III sporulation protein AA [Bacillus cereus Q1]
gi|228585199|gb|EEK43310.1| Stage III sporulation protein AA [Bacillus cereus m1293]
gi|228642503|gb|EEK98790.1| Stage III sporulation protein AA [Bacillus cereus BDRD-ST26]
gi|358354728|dbj|BAL19900.1| stage III sporulation protein AA [Bacillus cereus NC7401]
gi|401086239|gb|EJP94466.1| stage III sporulation protein AA [Bacillus cereus IS075]
gi|401094803|gb|EJQ02873.1| stage III sporulation protein AA [Bacillus cereus AND1407]
gi|401212689|gb|EJR19432.1| stage III sporulation protein AA [Bacillus cereus MSX-D12]
gi|401215359|gb|EJR22076.1| stage III sporulation protein AA [Bacillus cereus MSX-A12]
gi|401796883|gb|AFQ10742.1| stage III sporulation protein AA [Bacillus cereus FRI-35]
Length = 308
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 129/263 (49%), Gaps = 28/263 (10%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + IV ED + ++K+
Sbjct: 5 LEVLPKTMKQLVENCKQYDALEEIRVRIGR-PLECIAQGEVFFYDYIVTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRIS----AIRNR---KM--QVIGLTCRVGRAVAGSAE 208
FS ++ + G R HRI I + KM V R+ R G AE
Sbjct: 64 SHFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSTVKMIRDVSSFNIRIARQKIGIAE 123
Query: 209 -IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGG 260
++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI G
Sbjct: 124 PLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSTSKIPSCKVGIVDERSEIAG 183
Query: 261 D-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
+P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 184 CVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVHA 241
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 242 GVQLFISAHGFSYDDVVKRPSLK 264
>gi|229157792|ref|ZP_04285867.1| Stage III sporulation protein AA [Bacillus cereus ATCC 4342]
gi|228625749|gb|EEK82501.1| Stage III sporulation protein AA [Bacillus cereus ATCC 4342]
Length = 308
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 129/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + + L E+ + +GR PL G+ + IV ED + ++K+
Sbjct: 5 LEVLPKTMKQLVESCKWCDALEEIRVRIGR-PLECIAHGEVFFYDYIVTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLK 264
>gi|228987384|ref|ZP_04147504.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229093252|ref|ZP_04224370.1| Stage III sporulation protein AA [Bacillus cereus Rock3-42]
gi|228690226|gb|EEL44020.1| Stage III sporulation protein AA [Bacillus cereus Rock3-42]
gi|228772356|gb|EEM20802.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 308
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 129/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + + L E+ + +GR PL G+ + IV ED + ++K+
Sbjct: 5 LEVLPKTMKQLVESCKWCDALEEIRVRIGR-PLECIAHGEVFFYDYIVTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASEIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLK 264
>gi|20807732|ref|NP_622903.1| stage III sporulation protein spoIIIAA [Thermoanaerobacter
tengcongensis MB4]
gi|254479690|ref|ZP_05092986.1| stage III sporulation protein AA [Carboxydibrachium pacificum DSM
12653]
gi|20516285|gb|AAM24507.1| stage III sporulation protein spoIIIAA [Thermoanaerobacter
tengcongensis MB4]
gi|214034376|gb|EEB75154.1| stage III sporulation protein AA [Carboxydibrachium pacificum DSM
12653]
Length = 330
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 96/175 (54%), Gaps = 15/175 (8%)
Query: 182 ISAIRNRKMQVIGLTCRVGRAVAGSA-EIICDLVEGGGSI---LVIGPPGVGKTTLIREI 237
I I+N V G R+ + V G+A EI+ L++ GS+ L+I PP GKTTL+R+I
Sbjct: 121 IKIIKN----VSGYNYRISKEVLGAADEIMEYLIDRQGSVYNLLIISPPQCGKTTLLRDI 176
Query: 238 ARMLADDHM----KRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVE 292
AR L+D M K+V I+D +EI G + VP +G R V + + MI A+
Sbjct: 177 ARALSDGFMGFGGKKVCIIDERSEIAGCYNGVPQLNVGI--RTDVLDRCPKAEGMIMAIR 234
Query: 293 NHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGG 347
+ P+ ++ DEIG + + A + GV+++ T H I+++ K P L+ LV G
Sbjct: 235 SMSPQVVVTDEIGKKEDIEALRHVLNAGVKIITTVHAKDIEDLKKRPLLKDLVEG 289
>gi|423395504|ref|ZP_17372705.1| stage III sporulation protein AA [Bacillus cereus BAG2X1-1]
gi|423406380|ref|ZP_17383529.1| stage III sporulation protein AA [Bacillus cereus BAG2X1-3]
gi|401654915|gb|EJS72454.1| stage III sporulation protein AA [Bacillus cereus BAG2X1-1]
gi|401660374|gb|EJS77856.1| stage III sporulation protein AA [Bacillus cereus BAG2X1-3]
Length = 308
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M+R + ++ L E+ + +GR PL G+ + I ED + ++K+
Sbjct: 5 LEVLPKTMKRLVEGCKQYDTLEEIRVRIGR-PLECIAHGEVFFYDYIATAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASQIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + +++VK PSL+
Sbjct: 241 AGVQLFISAHGFSYEDVVKRPSLK 264
>gi|47569452|ref|ZP_00240133.1| stage III sporulation protein AA [Bacillus cereus G9241]
gi|47553867|gb|EAL12237.1| stage III sporulation protein AA [Bacillus cereus G9241]
Length = 308
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 129/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + + L E+ + +GR PL G+ + IV ED + ++K+
Sbjct: 5 LEVLPKTMKQLVESCKWCDALEEIRVRIGR-PLECIAHGEVFFYDYIVTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYETRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLK 264
>gi|429765574|ref|ZP_19297859.1| stage III sporulation protein AA [Clostridium celatum DSM 1785]
gi|429186025|gb|EKY26988.1| stage III sporulation protein AA [Clostridium celatum DSM 1785]
Length = 329
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 132/263 (50%), Gaps = 29/263 (11%)
Query: 99 IELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLK 158
+E E +LPS + E+ + ++ + E+ + +G++ + G+ ++ I +EDLK
Sbjct: 23 VEYEEIYRMLPSGINEEVKRYFKIEGVQEIRVKIGKQVMLTTSKGEKILDYTIT-NEDLK 81
Query: 159 HAISKVGDFS-----DDNRSGID--RSLHRI-----SAIRNRKMQVI----GLTCRVGRA 202
+ +SK+ ++S ++ + G + HR+ + N +++ I L R+
Sbjct: 82 YMMSKISNYSLYAFEEEIKQGYITVKGGHRVGLAGECVMVNGEVRTIKNISSLNIRICNE 141
Query: 203 VAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHM------KRVVIVD 253
V GS+ + + + L++ PP GKTT++R+IAR +++ K+V IVD
Sbjct: 142 VVGSSNRVMKYITNNNKVYNTLIVSPPKCGKTTILRDIARNISNGMYSLNLRGKKVTIVD 201
Query: 254 TSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALA 312
+EI G + +P +G R V + ++ MI A+ + PE +I DEIGTE + A
Sbjct: 202 ERSEIAGCYNGIPQMNVGV--RTDVLDNCLKRIGMIMAIRSLSPEVLICDEIGTEGDLEA 259
Query: 313 ASTIAQRGVQLVGTAHGMTIDNI 335
+ GV ++ T HG I++I
Sbjct: 260 LNMAFNSGVNIIVTVHGNDINDI 282
>gi|423615466|ref|ZP_17591300.1| stage III sporulation protein AA [Bacillus cereus VD115]
gi|401260003|gb|EJR66176.1| stage III sporulation protein AA [Bacillus cereus VD115]
Length = 308
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 129/266 (48%), Gaps = 28/266 (10%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED + ++K+
Sbjct: 5 LEVLPKTMKQLVESCKQYDTLEEIRVRIGR-PLECIAHGEVFFYDYIATAEDASYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRIS----AIRNR---KM--QVIGLTCRVGRAVAGSAE 208
FS ++ + G R HRI I + KM V R+ R G AE
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSTVKMIRDVSSFNIRIARQKIGIAE 123
Query: 209 -IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGG 260
++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI G
Sbjct: 124 PLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVGTSKIPSCKVGIVDERSEIAG 183
Query: 261 D-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
+P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 184 CVKGIPQYEFGT--RLDVLDACPKAEGMMMMIRSMSPDVLIVDEIGRKEDSEAIMEAVHA 241
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQILV 345
GVQL +AHG + D++ K PSLQ ++
Sbjct: 242 GVQLFISAHGFSYDDVEKRPSLQAVL 267
>gi|229163141|ref|ZP_04291096.1| Stage III sporulation protein AA [Bacillus cereus R309803]
gi|228620204|gb|EEK77075.1| Stage III sporulation protein AA [Bacillus cereus R309803]
Length = 308
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 128/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +G KPL G+ + I ED + ++K+
Sbjct: 5 LEVLPKTMKQLVEGCKQYDTLEEIRVRIG-KPLECIAHGEVFFYDYITTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 EIICDLV--EGGGSILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E + + E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYEERWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASEIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYEFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + +++VK PSLQ
Sbjct: 241 AGVQLFISAHGFSYEDVVKRPSLQ 264
>gi|229086768|ref|ZP_04218932.1| Stage III sporulation protein AA [Bacillus cereus Rock3-44]
gi|228696543|gb|EEL49364.1| Stage III sporulation protein AA [Bacillus cereus Rock3-44]
Length = 308
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 126/264 (47%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + + L E+ + +GR PL G+ + +V ED + ++K+
Sbjct: 5 LEVLPKHMKQFIEGCEQYNTLEEIRVRIGR-PLECIAHGEVFFYDYVVTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
+S ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQYSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 EIICDLVEGGGSI--LVIGPPGVGKTTLIREIARMLADDHMKR------VVIVDTSNEIG 259
E + + + +VIGPP GKTTL+R++AR ++ R V IVD +EI
Sbjct: 123 EPLLPYLYSARWLNTMVIGPPQTGKTTLLRDVARCMSQGVYSREIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG ++ A
Sbjct: 183 GCVKGIPQYEFGP--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRMEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D+++K PSL+
Sbjct: 241 AGVQLFISAHGFSFDDVMKRPSLK 264
>gi|154483666|ref|ZP_02026114.1| hypothetical protein EUBVEN_01370 [Eubacterium ventriosum ATCC
27560]
gi|149735576|gb|EDM51462.1| putative stage III sporulation protein AA [Eubacterium ventriosum
ATCC 27560]
Length = 283
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 123/256 (48%), Gaps = 33/256 (12%)
Query: 101 LELFLELLPSRMR---RELCMHR--ELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHE 155
+E+ + LP +R R C ++ + D+ E+ + + + + ++VISE IV E
Sbjct: 1 MEIIEKYLPPNVRNAIRNKCENQWMDFNDITEIRLRINCPLIIFIKNNEYVISEYIVNEE 60
Query: 156 DLKHAISKVGDFS----------------DDNRSGIDRSL----HRISAIRNRKMQVIGL 195
D+K A + + ++S +R G+ + I+ I+N K +
Sbjct: 61 DIKTAFNLITEYSAYSFESSIRNGYITIPGGHRVGLGGQVVMDDKGINIIKNIKF----M 116
Query: 196 TCRVGRAVAGS-AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254
R+ + + E++ +VE ++L+I PPG+GKTTL+R I R ++ V +VD
Sbjct: 117 NYRISHDLKNAGCELVNKIVEEKENLLIISPPGLGKTTLLRNIIRGYSNLKGINVTVVDE 176
Query: 255 SNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAA 313
NEIGG VP +G R V + ++S ++ A+ + P+ I +DEIG+ + A
Sbjct: 177 RNEIGGSYRGVPMINLG--LRTDVISDCTKYSGIVMAIRSMAPKVIAVDEIGSGADFKAI 234
Query: 314 STIAQRGVQLVGTAHG 329
GV +V T HG
Sbjct: 235 EYAVNSGVSVVATIHG 250
>gi|229019412|ref|ZP_04176235.1| Stage III sporulation protein AA [Bacillus cereus AH1273]
gi|229025656|ref|ZP_04182062.1| Stage III sporulation protein AA [Bacillus cereus AH1272]
gi|423389488|ref|ZP_17366714.1| stage III sporulation protein AA [Bacillus cereus BAG1X1-3]
gi|228735654|gb|EEL86243.1| Stage III sporulation protein AA [Bacillus cereus AH1272]
gi|228741882|gb|EEL92059.1| Stage III sporulation protein AA [Bacillus cereus AH1273]
gi|401641579|gb|EJS59296.1| stage III sporulation protein AA [Bacillus cereus BAG1X1-3]
Length = 308
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + I ED + ++K+
Sbjct: 5 LEVLPKTMKQLVEGCKQYDALEEIRVRIGR-PLECIAHGEVFFYDYIATAEDALYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASKIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 241 AGVQLFISAHGFSYDDVVKRPSLR 264
>gi|170757502|ref|YP_001781446.1| stage III sporulation protein AA [Clostridium botulinum B1 str.
Okra]
gi|429246197|ref|ZP_19209539.1| stage III sporulation protein AA [Clostridium botulinum
CFSAN001628]
gi|169122714|gb|ACA46550.1| stage III sporulation protein AA [Clostridium botulinum B1 str.
Okra]
gi|428756801|gb|EKX79331.1| stage III sporulation protein AA [Clostridium botulinum
CFSAN001628]
Length = 307
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 133/270 (49%), Gaps = 29/270 (10%)
Query: 102 ELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAI 161
E L +LPS + R +C E+ L E+ +G+ + + + + S + VK ED+K +
Sbjct: 4 EEILNILPSHISRLICDLDEVDKLQEIRFKIGKPIFFQIGNTEKLASYE-VKREDIKSIV 62
Query: 162 SKVGDFS-----DDNRSGI--DRSLHRI-----SAIRNRKMQVI----GLTCRVGRAVAG 205
++ ++S ++ + G + HR+ I K++ I L R+ R +
Sbjct: 63 QRMSNYSIYSFEEEIKQGYLTIKGGHRVGICGRCVIDEGKVKTIRDISSLNIRICREIYN 122
Query: 206 SAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLAD--DHM----KRVVIVDTSN 256
+++++ + G +L +I PP GKTT+IR+I++ ++D D + K+V ++D +
Sbjct: 123 ASKLVMPYIVENGHVLNTIIISPPKCGKTTIIRDISKKISDGVDALNLKGKKVSVIDERS 182
Query: 257 EIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST 315
EI G + VP +G R V + + ++ A+ + PE II DEIGT + +
Sbjct: 183 EIAGSYNGVPQLDVGL--RTDVLDNCPKSEGIVMAIRSMAPEVIICDEIGTYNDVESILI 240
Query: 316 IAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
GV L+ T HG +++I P + +V
Sbjct: 241 ALNSGVSLITTIHGFGVEDIYNRPVFKEIV 270
>gi|170760679|ref|YP_001787223.1| stage III sporulation protein AA [Clostridium botulinum A3 str.
Loch Maree]
gi|169407668|gb|ACA56079.1| stage III sporulation protein AA [Clostridium botulinum A3 str.
Loch Maree]
Length = 307
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 133/270 (49%), Gaps = 29/270 (10%)
Query: 102 ELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAI 161
E L +LPS + R +C E+ L E+ +G+ + + + + S + VK ED+K +
Sbjct: 4 EEILNILPSHISRLICDLDEVDKLQEIRFKIGKPIFFQIGNIEKLASYE-VKREDIKSIV 62
Query: 162 SKVGDFS-----DDNRSGI--DRSLHRI-----SAIRNRKMQVI----GLTCRVGRAVAG 205
++ ++S ++ + G + HR+ I K++ I L R+ R +
Sbjct: 63 QRMSNYSIYSFEEEIKQGYLTIKGGHRVGICGRCVIDGGKVKTIRDISSLNIRICREIYN 122
Query: 206 SAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLAD--DHM----KRVVIVDTSN 256
+++++ + G +L +I PP GKTT+IR+I++ ++D D + K+V ++D +
Sbjct: 123 ASKLVMPYIVENGQVLNTIIISPPKCGKTTIIRDISKKISDGVDALSLKGKKVSVIDERS 182
Query: 257 EIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST 315
EI G + VP +G R V + + ++ A+ + PE II DEIGT + +
Sbjct: 183 EIAGSYNGVPQLDVGL--RTDVLDNCPKSEGIVMAIRSMAPEVIICDEIGTYNDVESILI 240
Query: 316 IAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
GV L+ T HG +++I P + +V
Sbjct: 241 ALNSGVSLITTIHGFGVEDIYNRPVFKEIV 270
>gi|42783312|ref|NP_980559.1| stage III sporulation protein AA [Bacillus cereus ATCC 10987]
gi|42739240|gb|AAS43167.1| stage III sporulation protein AA [Bacillus cereus ATCC 10987]
Length = 308
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 129/263 (49%), Gaps = 28/263 (10%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + ++ L E+ + +GR PL G+ + IV +D + ++K+
Sbjct: 5 LEVLPKTMKQLVENCKQYDALEEIRVRIGR-PLECIAHGEVFFYDYIVTADDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRIS----AIRNR---KM--QVIGLTCRVGRAVAGSAE 208
FS ++ + G R HRI I + KM V R+ R G AE
Sbjct: 64 SHFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSTVKMIRDVSSFNIRIARQKIGIAE 123
Query: 209 -IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGG 260
++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI G
Sbjct: 124 PLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSTSKIPSCKVGIVDERSEIAG 183
Query: 261 D-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
+P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 184 CVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVHA 241
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 242 GVQLFISAHGFSYDDVVKRPSLK 264
>gi|110801582|ref|YP_699116.1| stage III sporulation protein AA [Clostridium perfringens SM101]
gi|110682083|gb|ABG85453.1| stage III sporulation protein AA [Clostridium perfringens SM101]
Length = 294
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 130/276 (47%), Gaps = 42/276 (15%)
Query: 102 ELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAI 161
E+F ++LP ++ L L L E+ + +G KPL +I +++ ED+K I
Sbjct: 3 EIF-DVLPDKINSCLKDKNNLNKLQEIRVKIG-KPLNIVLDNTEIIFNYVIRKEDVKAII 60
Query: 162 SKVGDFS-----DDNRSGID--RSLHR-------------ISAIRNRKMQVIGLTCRVGR 201
K+ ++S +D R G + HR I IRN + L RV R
Sbjct: 61 QKISNYSLYAFEEDIRQGYITIQGGHRVGLAGQCVIEDNSIKTIRN----ITSLNIRVCR 116
Query: 202 AVAG-SAEIICDLVEGG--GSILVIGPPGVGKTTLIREIARMLADD------HMKRVVIV 252
+ G S ++ LVE + L+I PP GKTTL+R+I R +++ KR V++
Sbjct: 117 EIVGCSNSLMNSLVENNRVNNTLIISPPKCGKTTLLRDITRNISNGISQIGFKGKRTVVI 176
Query: 253 DTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT--ELE 309
D +EI + +P +G R V + ++ M+ AV PE II DEIGT ++E
Sbjct: 177 DERSEIAACYNGIPQMNVGM--RTDVYDNCIKSEGMMMAVRGLSPEVIICDEIGTYKDME 234
Query: 310 ALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
L + GV ++ T HG ++ + + P + +V
Sbjct: 235 GLMMA--YNSGVSIIATLHGRNVEELYRRPVFREIV 268
>gi|384182023|ref|YP_005567785.1| stage III sporulation protein AA [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324328107|gb|ADY23367.1| stage III sporulation protein AA [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 308
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 28/263 (10%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + + L E+ + +GR PL G+ + IV ED + ++K+
Sbjct: 5 LEVLPKTMKQLVESCKCCDALEEIRVRIGR-PLECIAQGEVFFYDYIVTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRIS----AIRNR---KM--QVIGLTCRVGRAVAGSAE 208
FS ++ + G R HRI I + KM V R+ R G AE
Sbjct: 64 SHFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSTVKMIRDVSSFNIRIARQKIGIAE 123
Query: 209 -IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGG 260
++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI G
Sbjct: 124 PLLPYLYESRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASEIPSCKVGIVDERSEIAG 183
Query: 261 D-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
+P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 184 CVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVHA 241
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D++VK PSL+
Sbjct: 242 GVQLFISAHGFSYDDVVKRPSLK 264
>gi|148379856|ref|YP_001254397.1| stage III sporulation protein AA [Clostridium botulinum A str. ATCC
3502]
gi|153932422|ref|YP_001384153.1| stage III sporulation protein AA [Clostridium botulinum A str. ATCC
19397]
gi|153935244|ref|YP_001387694.1| stage III sporulation protein AA [Clostridium botulinum A str.
Hall]
gi|168180483|ref|ZP_02615147.1| stage III sporulation protein AA [Clostridium botulinum NCTC 2916]
gi|226949193|ref|YP_002804284.1| stage III sporulation protein AA [Clostridium botulinum A2 str.
Kyoto]
gi|148289340|emb|CAL83436.1| stage III sporulation protein AA [Clostridium botulinum A str. ATCC
3502]
gi|152928466|gb|ABS33966.1| stage III sporulation protein AA [Clostridium botulinum A str. ATCC
19397]
gi|152931158|gb|ABS36657.1| stage III sporulation protein AA [Clostridium botulinum A str.
Hall]
gi|182668758|gb|EDT80736.1| stage III sporulation protein AA [Clostridium botulinum NCTC 2916]
gi|226844597|gb|ACO87263.1| stage III sporulation protein AA [Clostridium botulinum A2 str.
Kyoto]
Length = 307
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 133/270 (49%), Gaps = 29/270 (10%)
Query: 102 ELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAI 161
E L +LPS + R +C E+ L E+ +G+ + + + + S + VK ED+K +
Sbjct: 4 EEILNILPSHISRLICDLDEVDKLQEIRFKIGKPIFFQIGNIEKLASYE-VKREDIKSIV 62
Query: 162 SKVGDFS-----DDNRSGI--DRSLHRI-----SAIRNRKMQVI----GLTCRVGRAVAG 205
++ ++S ++ + G + HR+ I K++ I L R+ R +
Sbjct: 63 QRMSNYSIYSFEEEIKQGYLTIKGGHRVGICGRCVIDEGKVKTIRDISSLNIRICREIYN 122
Query: 206 SAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLAD--DHM----KRVVIVDTSN 256
+++++ + G +L +I PP GKTT+IR+I++ ++D D + K+V ++D +
Sbjct: 123 ASKLVMPYIVENGHVLNTIIISPPKCGKTTIIRDISKKISDGVDALNLKGKKVSVIDERS 182
Query: 257 EIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST 315
EI G + VP +G R V + + ++ A+ + PE II DEIGT + +
Sbjct: 183 EIAGSYNGVPQLDVGL--RTDVLDNCPKSEGIVMAIRSMAPEVIICDEIGTYNDVESILI 240
Query: 316 IAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
GV L+ T HG +++I P + +V
Sbjct: 241 ALNSGVSLITTIHGFGVEDIYNRPVFKEIV 270
>gi|228910029|ref|ZP_04073849.1| Stage III sporulation protein AA [Bacillus thuringiensis IBL 200]
gi|228849546|gb|EEM94380.1| Stage III sporulation protein AA [Bacillus thuringiensis IBL 200]
Length = 308
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 127/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M+ + ++ L E+ + +GR PL G + I ED + ++K+
Sbjct: 5 LEVLPKTMKYLIEECKQYDALEEIRVRIGR-PLECIAHGKVFFYDYITTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLAYLYEKRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASEIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + +++VK PSL+
Sbjct: 241 AGVQLFISAHGFSYEDVVKRPSLK 264
>gi|424836158|ref|ZP_18260815.1| stage III sporulation protein AA [Clostridium sporogenes PA 3679]
gi|365977560|gb|EHN13659.1| stage III sporulation protein AA [Clostridium sporogenes PA 3679]
Length = 307
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 130/268 (48%), Gaps = 29/268 (10%)
Query: 104 FLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK 163
L +LPS + R +C E+ L E+ +G KP+ ++ VK ED+K + +
Sbjct: 6 ILNILPSHISRLICDLDEVDKLQEIRFKIG-KPICFQIGNKEKLASYEVKREDIKSIVQR 64
Query: 164 VGDFS-----DDNRSGI--DRSLHRI-----SAIRNRKMQVI----GLTCRVGRAVAGSA 207
+ ++S ++ + G + HR+ I K++ I L R+ R + ++
Sbjct: 65 MSNYSIYSFEEEIKQGYLTIKGGHRVGICGRCVIDGGKVKTIRDISSLNIRICREIYNAS 124
Query: 208 EIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLAD--DHM----KRVVIVDTSNEI 258
+++ + G +L +I PP GKTT+IR+I++ ++D D + ++V ++D +EI
Sbjct: 125 KLVMPYIVENGQVLNTIIISPPKCGKTTIIRDISKKISDGVDSLNLKGQKVSVIDERSEI 184
Query: 259 GGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIA 317
G + VP +G R V + + ++ A+ + PE II DEIGT + +
Sbjct: 185 AGSYNGVPQLDVGL--RTDVLDNCPKSEGIVMAIRSMAPEVIICDEIGTYKDVESILIAL 242
Query: 318 QRGVQLVGTAHGMTIDNIVKNPSLQILV 345
GV L+ T HG +++I P + +V
Sbjct: 243 NSGVSLITTIHGFGVEDIYNRPVFKEIV 270
>gi|365159017|ref|ZP_09355204.1| stage III sporulation protein AA [Bacillus sp. 7_6_55CFAA_CT2]
gi|363626006|gb|EHL77015.1| stage III sporulation protein AA [Bacillus sp. 7_6_55CFAA_CT2]
Length = 308
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 130/267 (48%), Gaps = 30/267 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M+ + ++ L E+ + +GR PL G + I ED + ++K+
Sbjct: 5 LEVLPKTMKYLIEECKQYDALEEIRVRIGR-PLECIAHGKVFFYDYITTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYEKRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASEIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQILV 345
GVQL +AHG + +++V+ PSL++++
Sbjct: 241 AGVQLFISAHGFSYEDVVRRPSLKVVL 267
>gi|168184581|ref|ZP_02619245.1| stage III sporulation protein AA [Clostridium botulinum Bf]
gi|237795310|ref|YP_002862862.1| stage III sporulation protein AA [Clostridium botulinum Ba4 str.
657]
gi|182672334|gb|EDT84295.1| stage III sporulation protein AA [Clostridium botulinum Bf]
gi|229261521|gb|ACQ52554.1| stage III sporulation protein AA [Clostridium botulinum Ba4 str.
657]
Length = 307
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 133/270 (49%), Gaps = 29/270 (10%)
Query: 102 ELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAI 161
E L +LPS + R +C E+ L E+ +GR + + + + S + VK ED++ +
Sbjct: 4 EEILNILPSHISRLICDLDEVDKLQEIRFKIGRPIFFQIGNIEKLASYE-VKREDIRSIV 62
Query: 162 SKVGDFS-----DDNRSGI--DRSLHRI-----SAIRNRKMQVI----GLTCRVGRAVAG 205
++ ++S ++ + G + HR+ I K++ I L R+ R +
Sbjct: 63 QRMSNYSIYSFEEEIKQGYLTIKGGHRVGICGRCVIDEGKVKTIRDISSLNIRICREIYN 122
Query: 206 SAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLAD--DHM----KRVVIVDTSN 256
+++++ + G +L +I PP GKTT+IR+I++ ++D D + K+V ++D +
Sbjct: 123 ASKLVMPYIVENGQVLNTIIISPPKCGKTTIIRDISKKISDGVDALSLKGKKVSVIDERS 182
Query: 257 EIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST 315
EI G + VP +G R V + + ++ A+ + PE +I DEIGT + +
Sbjct: 183 EIAGSYNGVPQLDVGL--RTDVLDNCPKSEGIVMAIRSMAPEVMICDEIGTYNDVESILI 240
Query: 316 IAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
GV L+ T HG +++I P + +V
Sbjct: 241 ALNSGVSLITTIHGFGVEDIYNRPVFKEIV 270
>gi|422874752|ref|ZP_16921237.1| stage III sporulation protein AA [Clostridium perfringens F262]
gi|380304393|gb|EIA16682.1| stage III sporulation protein AA [Clostridium perfringens F262]
Length = 294
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 129/276 (46%), Gaps = 42/276 (15%)
Query: 102 ELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAI 161
E+F ++LP ++ L L L E+ + +G KPL I +++ ED+K I
Sbjct: 3 EIF-DVLPDKINSCLKDKNNLNKLQEIRVKVG-KPLNIVLDNTETIFNYVIRREDVKAII 60
Query: 162 SKVGDFS-----DDNRSGID--RSLHR-------------ISAIRNRKMQVIGLTCRVGR 201
K+ ++S +D R G + HR I IRN + L RV R
Sbjct: 61 QKISNYSLYAFEEDIRQGYITIQGGHRVGLAGQCVIEDNSIKTIRN----ITSLNIRVCR 116
Query: 202 AVAG-SAEIICDLVEGG--GSILVIGPPGVGKTTLIREIARMLADD------HMKRVVIV 252
+ G S ++ LVE + L+I PP GKTTL+R+I R +++ KR V++
Sbjct: 117 EIVGCSNSLMNSLVENNRVNNTLIISPPKCGKTTLLRDITRNISNGISQIGFKGKRTVVI 176
Query: 253 DTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT--ELE 309
D +EI + +P +G R V + ++ M+ AV PE II DEIGT ++E
Sbjct: 177 DERSEIAACYNGIPQMNVGM--RTDVYDNCIKSEGMMMAVRGLSPEVIICDEIGTYKDME 234
Query: 310 ALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
L + GV ++ T HG ++ + + P + +V
Sbjct: 235 GLMMA--YNSGVSIIATLHGRNVEELYRRPVFREIV 268
>gi|187779500|ref|ZP_02995973.1| hypothetical protein CLOSPO_03096 [Clostridium sporogenes ATCC
15579]
gi|187773125|gb|EDU36927.1| stage III sporulation protein AA [Clostridium sporogenes ATCC
15579]
Length = 310
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 130/268 (48%), Gaps = 29/268 (10%)
Query: 104 FLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK 163
L +LPS + R +C E+ L E+ +G KP+ ++ VK ED+K + +
Sbjct: 9 ILNILPSHISRLICDLDEVDKLQEIRFKIG-KPICFQVGNREKLASYEVKREDIKSIVQR 67
Query: 164 VGDFS-----DDNRSGI--DRSLHRI-----SAIRNRKMQVI----GLTCRVGRAVAGSA 207
+ ++S ++ + G + HR+ I K++ I L R+ R + ++
Sbjct: 68 MSNYSIYSFEEEIKQGYLTIKGGHRVGICGRCVIDGGKVKTIRDISSLNIRICREIYNAS 127
Query: 208 EIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLAD--DHM----KRVVIVDTSNEI 258
+++ + G +L +I PP GKTT+IR+I++ ++D D + ++V ++D +EI
Sbjct: 128 KLVMPYIVENGQVLNTIIISPPKCGKTTIIRDISKKISDGVDALNLKGQKVSVIDERSEI 187
Query: 259 GGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIA 317
G + VP +G R V + + ++ A+ + PE II DEIGT + +
Sbjct: 188 AGSYNGVPQLDVGL--RTDVLDNCPKSEGIVMAIRSMAPEVIICDEIGTYKDVESILIAL 245
Query: 318 QRGVQLVGTAHGMTIDNIVKNPSLQILV 345
GV L+ T HG +++I P + +V
Sbjct: 246 NSGVSLITTIHGFGVEDIYNRPVFKEIV 273
>gi|228998985|ref|ZP_04158567.1| Stage III sporulation protein AA [Bacillus mycoides Rock3-17]
gi|229006532|ref|ZP_04164170.1| Stage III sporulation protein AA [Bacillus mycoides Rock1-4]
gi|228754718|gb|EEM04125.1| Stage III sporulation protein AA [Bacillus mycoides Rock1-4]
gi|228760602|gb|EEM09566.1| Stage III sporulation protein AA [Bacillus mycoides Rock3-17]
Length = 308
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + + L E+ + +GR PL G+ + +V ED + ++K+
Sbjct: 5 LEVLPKAMKQFIEGCEQYSALEEIRVRIGR-PLECIARGEVFFYDYVVTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
+S ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQYSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 EIICDLVEGGGSI--LVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E + + + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLSYLYDSRWLNTMVIGPPQTGKTTLLRDVARCMSQGVRSHEIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG ++ A
Sbjct: 183 GCVKGIPQYEFGP--RVDVLDACPKAEGMMMMIRSMSPDVLIVDEIGRVEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D+++K PSL+
Sbjct: 241 AGVQLFISAHGFSFDDVMKRPSLK 264
>gi|168215461|ref|ZP_02641086.1| stage III sporulation protein AA [Clostridium perfringens NCTC
8239]
gi|182382302|gb|EDT79781.1| stage III sporulation protein AA [Clostridium perfringens NCTC
8239]
Length = 294
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 129/276 (46%), Gaps = 42/276 (15%)
Query: 102 ELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAI 161
E+F ++LP ++ L L L E+ + +G KPL I +++ ED+K I
Sbjct: 3 EIF-DVLPDKINSCLKDKSNLNKLQEIRVKVG-KPLNIVLDNTETIFNYVIRREDVKAII 60
Query: 162 SKVGDFS-----DDNRSGID--RSLHR-------------ISAIRNRKMQVIGLTCRVGR 201
K+ ++S +D R G + HR I IRN + L RV R
Sbjct: 61 QKISNYSLYAFEEDIRQGYITIQGGHRVGLAGQCVIEDNSIKTIRN----ITSLNIRVCR 116
Query: 202 AVAG-SAEIICDLVEGG--GSILVIGPPGVGKTTLIREIARMLADD------HMKRVVIV 252
+ G S ++ LVE + L+I PP GKTTL+R+I R +++ KR V++
Sbjct: 117 EIVGCSNSLMNSLVENNRVNNTLIISPPKCGKTTLLRDITRNISNGISQIGFKGKRTVVI 176
Query: 253 DTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT--ELE 309
D +EI + +P +G R V + ++ M+ AV PE II DEIGT ++E
Sbjct: 177 DERSEIAACYNGIPQMNVGM--RTDVYDNCIKSEGMMMAVRGLSPEVIICDEIGTYKDME 234
Query: 310 ALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
L + GV ++ T HG ++ + + P + +V
Sbjct: 235 GLMMA--YNSGVSIIATLHGRNVEELYRRPVFREIV 268
>gi|110800786|ref|YP_696516.1| stage III sporulation protein AA [Clostridium perfringens ATCC
13124]
gi|168206113|ref|ZP_02632118.1| stage III sporulation protein AA [Clostridium perfringens E str.
JGS1987]
gi|168210804|ref|ZP_02636429.1| stage III sporulation protein AA [Clostridium perfringens B str.
ATCC 3626]
gi|169343721|ref|ZP_02864720.1| stage III sporulation protein AA [Clostridium perfringens C str.
JGS1495]
gi|182625637|ref|ZP_02953406.1| stage III sporulation protein AA [Clostridium perfringens D str.
JGS1721]
gi|422346502|ref|ZP_16427416.1| stage III sporulation protein AA [Clostridium perfringens
WAL-14572]
gi|110675433|gb|ABG84420.1| stage III sporulation protein AA [Clostridium perfringens ATCC
13124]
gi|169298281|gb|EDS80371.1| stage III sporulation protein AA [Clostridium perfringens C str.
JGS1495]
gi|170662470|gb|EDT15153.1| stage III sporulation protein AA [Clostridium perfringens E str.
JGS1987]
gi|170711143|gb|EDT23325.1| stage III sporulation protein AA [Clostridium perfringens B str.
ATCC 3626]
gi|177909039|gb|EDT71514.1| stage III sporulation protein AA [Clostridium perfringens D str.
JGS1721]
gi|373226047|gb|EHP48374.1| stage III sporulation protein AA [Clostridium perfringens
WAL-14572]
Length = 294
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 129/276 (46%), Gaps = 42/276 (15%)
Query: 102 ELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAI 161
E+F ++LP ++ L L L E+ + +G KPL I +++ ED+K I
Sbjct: 3 EIF-DVLPDKINSCLKDKSNLNKLQEIRVKVG-KPLNIVLDNTETIFNYVIRREDVKAII 60
Query: 162 SKVGDFS-----DDNRSGID--RSLHR-------------ISAIRNRKMQVIGLTCRVGR 201
K+ ++S +D R G + HR I IRN + L RV R
Sbjct: 61 QKISNYSLYAFEEDIRQGYITIQGGHRVGLAGQCVIEDNSIKTIRN----ITSLNIRVCR 116
Query: 202 AVAG-SAEIICDLVEGG--GSILVIGPPGVGKTTLIREIARMLADD------HMKRVVIV 252
+ G S ++ LVE + L+I PP GKTTL+R+I R +++ KR V++
Sbjct: 117 EIVGCSNSLMNSLVENNRVNNTLIISPPKCGKTTLLRDITRNISNGISQIGFKGKRTVVI 176
Query: 253 DTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT--ELE 309
D +EI + +P +G R V + ++ M+ AV PE II DEIGT ++E
Sbjct: 177 DERSEIAACYNGIPQMNVGM--RTDVYDNCIKSEGMMMAVRGLSPEVIICDEIGTYKDME 234
Query: 310 ALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
L + GV ++ T HG ++ + + P + +V
Sbjct: 235 GLMMA--YNSGVSIIATLHGRNVEELYRRPVFREIV 268
>gi|423634977|ref|ZP_17610630.1| stage III sporulation protein AA [Bacillus cereus VD156]
gi|401278963|gb|EJR84893.1| stage III sporulation protein AA [Bacillus cereus VD156]
Length = 308
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 127/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M+ + ++ L E+ + +GR PL G + I ED + ++K+
Sbjct: 5 LEVLPKTMKYLIEECKQYDALEEIRVRIGR-PLECIAHGKVFFYDYITTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADD------HMKRVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYEKRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASEIPSSKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + +++V+ PSL+
Sbjct: 241 AGVQLFISAHGFSYEDVVRRPSLK 264
>gi|228941354|ref|ZP_04103906.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228974286|ref|ZP_04134855.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980879|ref|ZP_04141183.1| Stage III sporulation protein AA [Bacillus thuringiensis Bt407]
gi|384188264|ref|YP_005574160.1| stage III sporulation protein AA [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410676583|ref|YP_006928954.1| stage III sporulation protein AA [Bacillus thuringiensis Bt407]
gi|423385698|ref|ZP_17362954.1| stage III sporulation protein AA [Bacillus cereus BAG1X1-2]
gi|423527946|ref|ZP_17504391.1| stage III sporulation protein AA [Bacillus cereus HuB1-1]
gi|452200654|ref|YP_007480735.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228778815|gb|EEM27078.1| Stage III sporulation protein AA [Bacillus thuringiensis Bt407]
gi|228785336|gb|EEM33346.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818280|gb|EEM64353.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326941973|gb|AEA17869.1| stage III sporulation protein AA [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401635754|gb|EJS53509.1| stage III sporulation protein AA [Bacillus cereus BAG1X1-2]
gi|402451609|gb|EJV83428.1| stage III sporulation protein AA [Bacillus cereus HuB1-1]
gi|409175712|gb|AFV20017.1| stage III sporulation protein AA [Bacillus thuringiensis Bt407]
gi|452106047|gb|AGG02987.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 308
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 127/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M+ + ++ L E+ + +GR PL G + I ED + ++K+
Sbjct: 5 LEVLPKTMKYLIEECKQYDALEEIRVRIGR-PLECIAHGKVFFYDYITTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYEKRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASEIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + +++V+ PSL+
Sbjct: 241 AGVQLFISAHGFSYEDVVRRPSLK 264
>gi|206971017|ref|ZP_03231968.1| stage III sporulation protein AA [Bacillus cereus AH1134]
gi|218233741|ref|YP_002368996.1| stage III sporulation protein AA [Bacillus cereus B4264]
gi|228922948|ref|ZP_04086242.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228954479|ref|ZP_04116504.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228960461|ref|ZP_04122112.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229047889|ref|ZP_04193465.1| Stage III sporulation protein AA [Bacillus cereus AH676]
gi|229071700|ref|ZP_04204916.1| Stage III sporulation protein AA [Bacillus cereus F65185]
gi|229081453|ref|ZP_04213953.1| Stage III sporulation protein AA [Bacillus cereus Rock4-2]
gi|229111668|ref|ZP_04241218.1| Stage III sporulation protein AA [Bacillus cereus Rock1-15]
gi|229129473|ref|ZP_04258444.1| Stage III sporulation protein AA [Bacillus cereus BDRD-Cer4]
gi|229146768|ref|ZP_04275133.1| Stage III sporulation protein AA [Bacillus cereus BDRD-ST24]
gi|229152395|ref|ZP_04280587.1| Stage III sporulation protein AA [Bacillus cereus m1550]
gi|229180473|ref|ZP_04307815.1| Stage III sporulation protein AA [Bacillus cereus 172560W]
gi|229192406|ref|ZP_04319369.1| Stage III sporulation protein AA [Bacillus cereus ATCC 10876]
gi|296504681|ref|YP_003666381.1| stage III sporulation protein AA [Bacillus thuringiensis BMB171]
gi|423412001|ref|ZP_17389121.1| stage III sporulation protein AA [Bacillus cereus BAG3O-2]
gi|423426330|ref|ZP_17403361.1| stage III sporulation protein AA [Bacillus cereus BAG3X2-2]
gi|423432213|ref|ZP_17409217.1| stage III sporulation protein AA [Bacillus cereus BAG4O-1]
gi|423437648|ref|ZP_17414629.1| stage III sporulation protein AA [Bacillus cereus BAG4X12-1]
gi|423503117|ref|ZP_17479709.1| stage III sporulation protein AA [Bacillus cereus HD73]
gi|423582406|ref|ZP_17558517.1| stage III sporulation protein AA [Bacillus cereus VD014]
gi|423585324|ref|ZP_17561411.1| stage III sporulation protein AA [Bacillus cereus VD045]
gi|423630919|ref|ZP_17606666.1| stage III sporulation protein AA [Bacillus cereus VD154]
gi|423640723|ref|ZP_17616341.1| stage III sporulation protein AA [Bacillus cereus VD166]
gi|423650061|ref|ZP_17625631.1| stage III sporulation protein AA [Bacillus cereus VD169]
gi|423657139|ref|ZP_17632438.1| stage III sporulation protein AA [Bacillus cereus VD200]
gi|449091154|ref|YP_007423595.1| stage III sporulation protein AA [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|206733789|gb|EDZ50960.1| stage III sporulation protein AA [Bacillus cereus AH1134]
gi|218161698|gb|ACK61690.1| stage III sporulation protein AA [Bacillus cereus B4264]
gi|228590983|gb|EEK48839.1| Stage III sporulation protein AA [Bacillus cereus ATCC 10876]
gi|228602897|gb|EEK60376.1| Stage III sporulation protein AA [Bacillus cereus 172560W]
gi|228631003|gb|EEK87640.1| Stage III sporulation protein AA [Bacillus cereus m1550]
gi|228636596|gb|EEK93061.1| Stage III sporulation protein AA [Bacillus cereus BDRD-ST24]
gi|228654078|gb|EEL09945.1| Stage III sporulation protein AA [Bacillus cereus BDRD-Cer4]
gi|228671803|gb|EEL27097.1| Stage III sporulation protein AA [Bacillus cereus Rock1-15]
gi|228701868|gb|EEL54354.1| Stage III sporulation protein AA [Bacillus cereus Rock4-2]
gi|228711431|gb|EEL63390.1| Stage III sporulation protein AA [Bacillus cereus F65185]
gi|228723346|gb|EEL74715.1| Stage III sporulation protein AA [Bacillus cereus AH676]
gi|228799225|gb|EEM46191.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228805136|gb|EEM51730.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228836719|gb|EEM82066.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|296325733|gb|ADH08661.1| stage III sporulation protein AA [Bacillus thuringiensis BMB171]
gi|401104069|gb|EJQ12046.1| stage III sporulation protein AA [Bacillus cereus BAG3O-2]
gi|401111077|gb|EJQ18976.1| stage III sporulation protein AA [Bacillus cereus BAG3X2-2]
gi|401116969|gb|EJQ24807.1| stage III sporulation protein AA [Bacillus cereus BAG4O-1]
gi|401120803|gb|EJQ28599.1| stage III sporulation protein AA [Bacillus cereus BAG4X12-1]
gi|401213285|gb|EJR20026.1| stage III sporulation protein AA [Bacillus cereus VD014]
gi|401233967|gb|EJR40453.1| stage III sporulation protein AA [Bacillus cereus VD045]
gi|401264286|gb|EJR70398.1| stage III sporulation protein AA [Bacillus cereus VD154]
gi|401279784|gb|EJR85706.1| stage III sporulation protein AA [Bacillus cereus VD166]
gi|401282479|gb|EJR88378.1| stage III sporulation protein AA [Bacillus cereus VD169]
gi|401289882|gb|EJR95586.1| stage III sporulation protein AA [Bacillus cereus VD200]
gi|402459338|gb|EJV91075.1| stage III sporulation protein AA [Bacillus cereus HD73]
gi|449024911|gb|AGE80074.1| stage III sporulation protein AA [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 308
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 127/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M+ + ++ L E+ + +GR PL G + I ED + ++K+
Sbjct: 5 LEVLPKTMKYLIEECKQYDALEEIRVRIGR-PLECIAHGKVFFYDYITTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYEKRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASEIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + +++V+ PSL+
Sbjct: 241 AGVQLFISAHGFSYEDVVRRPSLK 264
>gi|18310815|ref|NP_562749.1| stage III sporulation protein AA [Clostridium perfringens str. 13]
gi|18145497|dbj|BAB81539.1| stage III sporulation protein AA [Clostridium perfringens str. 13]
Length = 294
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 128/276 (46%), Gaps = 42/276 (15%)
Query: 102 ELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAI 161
E+F +LP ++ L L L E+ + +G KPL I +++ ED+K I
Sbjct: 3 EIF-AVLPDKINSCLKDKSNLNKLQEIRVKVG-KPLNIVLDNTETIFNYVIRREDVKAII 60
Query: 162 SKVGDFS-----DDNRSGID--RSLHR-------------ISAIRNRKMQVIGLTCRVGR 201
K+ ++S +D R G + HR I IRN + L RV R
Sbjct: 61 QKISNYSLYAFEEDIRQGYITIQGGHRVGLAGQCVIEDNSIKTIRN----ITSLNIRVCR 116
Query: 202 AVAG-SAEIICDLVEGG--GSILVIGPPGVGKTTLIREIARMLADD------HMKRVVIV 252
+ G S ++ LVE + L+I PP GKTTL+R+I R +++ KR V++
Sbjct: 117 EIVGCSNSLMNSLVENNRVNNTLIISPPKCGKTTLLRDITRNISNGISQIGLKGKRTVVI 176
Query: 253 DTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT--ELE 309
D +EI + +P +G R V + ++ M+ AV PE II DEIGT ++E
Sbjct: 177 DERSEIAACYNGIPQMNVGM--RTDVYDNCIKSEGMMMAVRGLSPEVIICDEIGTYKDME 234
Query: 310 ALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
L + GV ++ T HG ++ + + P + +V
Sbjct: 235 GLMMA--YNSGVSIIATLHGRNVEELYRRPVFREIV 268
>gi|308805324|ref|XP_003079974.1| sporulation protein-related (ISS) [Ostreococcus tauri]
gi|116058431|emb|CAL53620.1| sporulation protein-related (ISS), partial [Ostreococcus tauri]
Length = 173
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 344 LVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILA 403
LVGG+++VTLGD+EA+ R QK+ILER+GPPTF +EM R + V H + +VD +L+
Sbjct: 2 LVGGVQTVTLGDDEARARGCQKSILERQGPPTFPILIEMHER-DMWVAHNVAESVDEVLS 60
Query: 404 GKLPLFEVRQMDAEHHE 420
G P+ ++R +A+ +E
Sbjct: 61 GARPVVQLRTRNAQTNE 77
>gi|433462230|ref|ZP_20419819.1| stage III sporulation protein AA [Halobacillus sp. BAB-2008]
gi|432189119|gb|ELK46252.1| stage III sporulation protein AA [Halobacillus sp. BAB-2008]
Length = 325
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 26/207 (12%)
Query: 175 IDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGG---SILVIGPPGVGKT 231
++ S HRI +++ + + RV R VAG + + G S ++IGPP GKT
Sbjct: 95 VNTSGHRIDTLKH----ITFMNIRVAREVAGQVSSLLPFLYADGRWKSTMIIGPPHSGKT 150
Query: 232 TLIREIARMLADDHMK----RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSV 286
TL+R +++ + DH +V +VD +EI VP +G R V + + +
Sbjct: 151 TLLRALSKWIGSDHTGYRGCKVAVVDERSEIAASLRGVPQLEVGV--RTDVMDGCPKAAG 208
Query: 287 MIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVG 346
M+ + + P+ +I+DEIG +A A + GVQ++ + HG T+D + K PS + LV
Sbjct: 209 MMMMIRSMSPDVLIVDEIGGLEDADAVREASYTGVQVICSIHGRTLDGVRKRPSARSLV- 267
Query: 347 GIESVTLGDEEAKKRKVQKTILERKGP 373
+E+ +R V +LER P
Sbjct: 268 --------EEQVFERYV---VLERMSP 283
>gi|317968813|ref|ZP_07970203.1| R3H domain-containing protein [Synechococcus sp. CB0205]
Length = 240
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 9/151 (5%)
Query: 505 IDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMES 564
+ + + + AD +LA+ ++ Q P +R A+ LP+ VIK++T+ Q+ + + +L
Sbjct: 98 VQLVEAVEEADVVLAARQQLGQRPELRRRAQDAGLPILVIKADTLPQIQRGLERLLQRRE 157
Query: 565 FGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSE 624
+ + DDA ++ALEE RLA+E +V+P G+ VELLPR
Sbjct: 158 DRPEATNAAARPAGASSRDDA---------LEALEECRLAVEQVVLPQGQPVELLPRTEA 208
Query: 625 IVARQLELVESYQLAAENSGTELNPRLQILP 655
I Q EL YQL + G+ RL++ P
Sbjct: 209 IRRMQAELAARYQLTSAEFGSGSQLRLRLFP 239
>gi|218899357|ref|YP_002447768.1| stage III sporulation protein AA [Bacillus cereus G9842]
gi|228902712|ref|ZP_04066859.1| Stage III sporulation protein AA [Bacillus thuringiensis IBL 4222]
gi|228967235|ref|ZP_04128271.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
sotto str. T04001]
gi|402564392|ref|YP_006607116.1| stage III sporulation protein AA [Bacillus thuringiensis HD-771]
gi|423358766|ref|ZP_17336269.1| stage III sporulation protein AA [Bacillus cereus VD022]
gi|423561330|ref|ZP_17537606.1| stage III sporulation protein AA [Bacillus cereus MSX-A1]
gi|434377318|ref|YP_006611962.1| stage III sporulation protein AA [Bacillus thuringiensis HD-789]
gi|218541836|gb|ACK94230.1| stage III sporulation protein AA [Bacillus cereus G9842]
gi|228792604|gb|EEM40170.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228856899|gb|EEN01412.1| Stage III sporulation protein AA [Bacillus thuringiensis IBL 4222]
gi|401084638|gb|EJP92884.1| stage III sporulation protein AA [Bacillus cereus VD022]
gi|401201587|gb|EJR08452.1| stage III sporulation protein AA [Bacillus cereus MSX-A1]
gi|401793044|gb|AFQ19083.1| stage III sporulation protein AA [Bacillus thuringiensis HD-771]
gi|401875875|gb|AFQ28042.1| stage III sporulation protein AA [Bacillus thuringiensis HD-789]
Length = 308
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 126/264 (47%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M+ + + L E+ + +GR PL G + I ED + ++K+
Sbjct: 5 LEVLPKTMKYLIEECEQYDALEEIRVRIGR-PLECIAHGKVFFYDYITTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYEKRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASEIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + +++V+ PSL+
Sbjct: 241 AGVQLFISAHGFSYEDVVRRPSLK 264
>gi|30022276|ref|NP_833907.1| stage III sporulation protein AA [Bacillus cereus ATCC 14579]
gi|29897833|gb|AAP11108.1| Stage III sporulation protein AA [Bacillus cereus ATCC 14579]
Length = 316
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 127/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M+ + ++ L E+ + +GR PL G + I ED + ++K+
Sbjct: 5 LEVLPKTMKYLIEECKQYDALEEIRVRIGR-PLECIAHGKVFFYDYITTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
FS ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQFSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 E-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E ++ L E + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLPYLYEKRWLNTMVIGPPQTGKTTLLRDVARCMSQGVSASEIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G R+ V + + M+ + + P+ +I+DEIG + ++ A
Sbjct: 183 GCVKGIPQYDFGT--RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + +++V+ PSL+
Sbjct: 241 AGVQLFISAHGFSYEDVVRRPSLK 264
>gi|228992941|ref|ZP_04152865.1| Stage III sporulation protein AA [Bacillus pseudomycoides DSM
12442]
gi|228766798|gb|EEM15437.1| Stage III sporulation protein AA [Bacillus pseudomycoides DSM
12442]
Length = 308
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 127/264 (48%), Gaps = 30/264 (11%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
LE+LP M++ + + L E+ + +GR+ L G+ + +V ED + ++K+
Sbjct: 5 LEVLPKAMKQFIEGCEQYSALEEIRVRIGRQ-LECIARGEVFFYDYVVTAEDAIYLLNKL 63
Query: 165 GDFS-----DDNRSGID--RSLHRI----------SAIRNRKMQVIGLTCRVGRAVAGSA 207
+S ++ + G R HRI SA++ + V R+ R G A
Sbjct: 64 SQYSIYTMEEELKRGYVTLRGGHRIGLAGKVITEKSAVKMIR-DVSSFNIRIARQKIGIA 122
Query: 208 EIICDLVEGGGSI--LVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259
E + + + +VIGPP GKTTL+R++AR ++ +V IVD +EI
Sbjct: 123 EPLLSYLYDSRWLNTMVIGPPQTGKTTLLRDVARCMSQGVRSHEIPSCKVGIVDERSEIA 182
Query: 260 GD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G +P G+ R+ V + + M+ + + P+ +I+DEIG ++ A
Sbjct: 183 GCVKGIPQYEFGQ--RVDVLDACPKAEGMMMMIRSMSPDVLIVDEIGRVEDSEAIMEAVH 240
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQ 342
GVQL +AHG + D+++K PSL+
Sbjct: 241 AGVQLFISAHGFSFDDVMKRPSLK 264
>gi|187935302|ref|YP_001886604.1| stage III sporulation protein AA [Clostridium botulinum B str.
Eklund 17B]
gi|187723455|gb|ACD24676.1| stage III sporulation protein AA [Clostridium botulinum B str.
Eklund 17B]
Length = 306
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 129/268 (48%), Gaps = 29/268 (10%)
Query: 104 FLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK 163
FL + PS + L +L L E+ + + + + G+ +++ K E++K I K
Sbjct: 7 FLNIFPSNIFNVLKDKCKLEQLYEIRIKIDKPIIVYSNKGESIVNYNSSK-EEMKSIIQK 65
Query: 164 VGDFS-----DDNRSGID--RSLHRI-----SAIRNRKMQVI----GLTCRVGRAVAGSA 207
+ ++S +D + G + HRI + N +++ I + R R V G +
Sbjct: 66 ISNYSLYAYEEDIKQGFITIKGGHRIGIAGECVMCNGEVKTIRNISSINVRFCREVIGCS 125
Query: 208 EIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADD------HMKRVVIVDTSNEI 258
I + G I ++I PP GKTT++R+I+R +++ + K+V ++D +EI
Sbjct: 126 NKIMKYIVSGDRIYNTIIISPPKCGKTTILRDISRNISNGMKSLGLNGKKVSVIDERSEI 185
Query: 259 GGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIA 317
G VP S +G R + + ++ MI ++ + PE +I DEIGT+ + A
Sbjct: 186 GACYFGVPQSDLGI--RTDILDNCLKKEGMIMSIRSLSPEVLICDEIGTKGDIEALIMAF 243
Query: 318 QRGVQLVGTAHGMTIDNIVKNPSLQILV 345
GV ++ + HG TID+I K + L+
Sbjct: 244 NSGVNIITSIHGFTIDDIYKRKVFKELI 271
>gi|168214407|ref|ZP_02640032.1| stage III sporulation protein AA [Clostridium perfringens CPE str.
F4969]
gi|170714158|gb|EDT26340.1| stage III sporulation protein AA [Clostridium perfringens CPE str.
F4969]
Length = 294
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 126/273 (46%), Gaps = 42/273 (15%)
Query: 102 ELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAI 161
E+F +LP ++ L L L E+ + +G KPL I +++ ED+K I
Sbjct: 3 EIF-AVLPDKINSCLKDKSNLNKLQEIRVKVG-KPLNIVLDNTETIFNYVIRIEDVKAII 60
Query: 162 SKVGDFS-----DDNRSGID--RSLHR-------------ISAIRNRKMQVIGLTCRVGR 201
K+ ++S +D R G + HR I IRN + L RV R
Sbjct: 61 QKISNYSLYAFEEDIRQGYITIQGGHRVGLAGQCVIEDNSIKTIRN----ITSLNIRVCR 116
Query: 202 AVAG-SAEIICDLVEGG--GSILVIGPPGVGKTTLIREIARMLADD------HMKRVVIV 252
+ G S ++ LVE + L+I PP GKTTL+R+I R +++ KR V++
Sbjct: 117 EIVGCSNSLMNSLVENNRVNNTLIISPPKCGKTTLLRDITRNISNGISQIGFKGKRTVVI 176
Query: 253 DTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT--ELE 309
D +EI + +P +G R V + ++ M+ AV PE II DEIGT ++E
Sbjct: 177 DERSEIAACYNGIPQMNVGM--RTDVYDNCIKSEGMMMAVRGLSPEVIICDEIGTYKDME 234
Query: 310 ALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
L + GV ++ T HG ++ + + P +
Sbjct: 235 GLMMA--YNSGVSIIATLHGRNVEELYRRPVFR 265
>gi|188590784|ref|YP_001921561.1| stage III sporulation protein AA [Clostridium botulinum E3 str.
Alaska E43]
gi|188501065|gb|ACD54201.1| stage III sporulation protein AA [Clostridium botulinum E3 str.
Alaska E43]
Length = 306
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 129/268 (48%), Gaps = 29/268 (10%)
Query: 104 FLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK 163
FL + PS + L +L L E+ + + + + G+ +++ K E++K I K
Sbjct: 7 FLNIFPSNIFNVLKDKCKLEQLYEIRIKINKPIIVYSNKGESIVNYNPSK-EEMKSIIQK 65
Query: 164 VGDFS-----DDNRSGID--RSLHRI-----SAIRNRKMQVI----GLTCRVGRAVAGSA 207
+ ++S +D + G + HRI + N +++ I + R R V G +
Sbjct: 66 ISNYSLYAYEEDIKQGFITIKGGHRIGIAGECVMCNGEVKTIRNISSINVRFCREVIGCS 125
Query: 208 EIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADD------HMKRVVIVDTSNEI 258
I + G I ++I PP GKTT++R+I+R +++ + K+V ++D +EI
Sbjct: 126 NKIMKHIISGDRIYNTIIISPPKCGKTTILRDISRNISNGMKSLGLNGKKVSVIDERSEI 185
Query: 259 GGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIA 317
G VP S +G R + + ++ MI ++ + PE +I DEIGT+ + A
Sbjct: 186 GACYFGVPQSDLGI--RTDILDNCLKKEGMIMSIRSLSPEVLICDEIGTKGDIEALIMAF 243
Query: 318 QRGVQLVGTAHGMTIDNIVKNPSLQILV 345
GV ++ + HG TID+I K + L+
Sbjct: 244 NSGVNIITSIHGFTIDDIYKRKVFKELI 271
>gi|251778035|ref|ZP_04820955.1| stage III sporulation protein AA [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243082350|gb|EES48240.1| stage III sporulation protein AA [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 306
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 129/268 (48%), Gaps = 29/268 (10%)
Query: 104 FLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK 163
FL + PS + L +L L E+ + + + + G+ +++ K E++K I K
Sbjct: 7 FLNIFPSNIFNVLKDKCKLEQLYEIRIKINKPIIVYSNKGESIVNYNPSK-EEMKSIIQK 65
Query: 164 VGDFS-----DDNRSGID--RSLHRI-----SAIRNRKMQVI----GLTCRVGRAVAGSA 207
+ ++S +D + G + HRI + N +++ I + R R V G +
Sbjct: 66 ISNYSLYAYEEDIKQGFITIKGGHRIGIAGECVMCNGEVKTIRNISSINVRFCREVIGCS 125
Query: 208 EIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADD------HMKRVVIVDTSNEI 258
I + G I ++I PP GKTT++R+I+R +++ + K+V ++D +EI
Sbjct: 126 NKIMKHIISGDRIYNTIIISPPKCGKTTILRDISRNISNGMKSLGLNGKKVSVIDERSEI 185
Query: 259 GGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIA 317
G VP S +G R + + ++ MI ++ + PE +I DEIGT+ + A
Sbjct: 186 GACYLGVPQSDLGI--RTDILDNCLKKEGMIMSIRSLSPEVLICDEIGTKGDIEALIMAF 243
Query: 318 QRGVQLVGTAHGMTIDNIVKNPSLQILV 345
GV ++ + HG TID+I K + L+
Sbjct: 244 NSGVNIITSIHGFTIDDIYKRKVFKELI 271
>gi|255524184|ref|ZP_05391144.1| stage III sporulation protein AA [Clostridium carboxidivorans P7]
gi|296186639|ref|ZP_06855041.1| stage III sporulation protein AA [Clostridium carboxidivorans P7]
gi|255512169|gb|EET88449.1| stage III sporulation protein AA [Clostridium carboxidivorans P7]
gi|296048676|gb|EFG88108.1| stage III sporulation protein AA [Clostridium carboxidivorans P7]
Length = 308
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 28/237 (11%)
Query: 135 KPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS-----DDNRSGID--RSLHRI----- 182
KPL + +I + I EDLK + ++ ++S ++ + G R HRI
Sbjct: 39 KPLVLENGKEEMIFKYIPSREDLKAIVQRISNYSIYAFEEEIKKGYITIRGGHRIGICGR 98
Query: 183 SAIRNRKMQVI----GLTCRVGRAVAGSAEIICDLVEGGGSIL---VIGPPGVGKTTLIR 235
I +++ I L R+ R V G ++ + D + +++ VI PP GKTTLIR
Sbjct: 99 CVIEKDEVKTIKSIASLNIRICREVIGCSDPLMDFIIKNNNVINTIVISPPKCGKTTLIR 158
Query: 236 EIARMLADDHM------KRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMI 288
+I R ++D K+V ++D +EIG + +P +G R + + ++ ++
Sbjct: 159 DIVRNISDGMKQKAFTGKKVCVIDERSEIGACYNGIPQLKLGL--RTDILDSCLKSQGIM 216
Query: 289 EAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
A+ + P+ ++ DEIGT + + GV L+ T HG I+++ K P + +V
Sbjct: 217 MAIRSMSPDVVVCDEIGTYKDMDSILFALNSGVNLITTIHGYGIEDLYKRPVFKEIV 273
>gi|410453700|ref|ZP_11307645.1| stage III sporulation protein AA [Bacillus bataviensis LMG 21833]
gi|409932914|gb|EKN69868.1| stage III sporulation protein AA [Bacillus bataviensis LMG 21833]
Length = 308
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 27/236 (11%)
Query: 135 KPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS------DDNRSGIDRSL-HRIS---- 183
+P+ G IV+ ED H ++K+ FS + R I S HRI
Sbjct: 36 RPIEMMLKGAPRFLSYIVQPEDAIHLLNKISHFSIYTLEEELKRGYITISGGHRIGLAGK 95
Query: 184 -AIRNRKMQVI----GLTCRVGRAVAGSAEIICDLVEGG--GSILVIGPPGVGKTTLIRE 236
+ + K++ I R+ R G AE I + G ++IGPP GKTTL+R+
Sbjct: 96 VILEDGKVKAIRDISSFNIRIAREKVGIAEPIVPFIYKGIWMHTMIIGPPQTGKTTLLRD 155
Query: 237 IARMLADDH------MKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIE 289
IAR+++ + +V +VD +EI G VP G R+ V + + M+
Sbjct: 156 IARIISTGNRAGGIQAYKVGVVDERSEIAGCVHGVPQLTFGH--RLDVLDACPKAEGMMM 213
Query: 290 AVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+ + P+ +I+DEIG + +A A G++L+ T HG +I+ + K PSL+ L+
Sbjct: 214 LIRSMSPDVLIVDEIGRKEDAEAILEAVHAGIKLIMTTHGTSIEELRKRPSLRDLI 269
>gi|403238245|ref|ZP_10916831.1| stage III sporulation protein AA [Bacillus sp. 10403023]
Length = 307
Score = 72.4 bits (176), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 76/132 (57%), Gaps = 9/132 (6%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKR------VVIVDTSNEIGGD-GDVPHSGIGRAR 273
++IGPP GKTTL+R++ARM++ + V IVD +EI G VP + +G
Sbjct: 140 IIIGPPQTGKTTLLRDLARMISTGIQSKSIPAMKVGIVDERSEIAGCVKGVPQASLGP-- 197
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R+ V + + M+ + + P+ +I+DEIG E ++LA GV L+ TAHG I
Sbjct: 198 RVDVLDACPKAEGMMMMIRSMSPDVLIVDEIGREEDSLAIMEAVNAGVSLIVTAHGHQIS 257
Query: 334 NIVKNPSLQILV 345
+++K PSL+ ++
Sbjct: 258 DLLKRPSLEKII 269
>gi|387929684|ref|ZP_10132361.1| stage III sporulation protein AA [Bacillus methanolicus PB1]
gi|387586502|gb|EIJ78826.1| stage III sporulation protein AA [Bacillus methanolicus PB1]
Length = 307
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 15/171 (8%)
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLV--EGGGSILVIGPPGVGKTTLIREIA 238
++ AIR+ + R+ R G A+ + + +G ++IGPP GKTTL+R+IA
Sbjct: 102 KVKAIRD----ISSFNIRIARERIGIADCLVPFLFHDGWLHTMIIGPPQTGKTTLLRDIA 157
Query: 239 RMLADDH------MKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAV 291
R+++ + +V IVD +EI G +P G R+ V + + M+ +
Sbjct: 158 RIISTGNEDLGFGASKVGIVDERSEIAGCVKGIPQLTFGN--RIDVLDACPKAEGMMMMI 215
Query: 292 ENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
+ P+ +++DEIG E +ALA G++L+ T HG +++ + K PSL+
Sbjct: 216 RSMSPDVLVVDEIGREEDALAIMEAVNAGIKLIMTTHGSSLEEVRKRPSLK 266
>gi|311069045|ref|YP_003973968.1| stage III sporulation protein AA [Bacillus atrophaeus 1942]
gi|419820311|ref|ZP_14343922.1| stage III sporulation protein AA [Bacillus atrophaeus C89]
gi|310869562|gb|ADP33037.1| stage III sporulation protein AA [Bacillus atrophaeus 1942]
gi|388475463|gb|EIM12175.1| stage III sporulation protein AA [Bacillus atrophaeus C89]
Length = 307
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 18/160 (11%)
Query: 221 LVIGPPGVGKTTLIREIARMLADD----HMKRVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++AR+ + K+ IVD +EI G +P G+ R+
Sbjct: 140 LIIGPPQTGKTTLLRDLARLSSSGINKIPAKKTGIVDERSEIAGCLRGIPQHQFGQ--RI 197
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + ++ + + PE II+DEIG ++ A GV ++ +AHG TI ++
Sbjct: 198 DVLDACPKAEGLMMMIRSMSPEVIIVDEIGRMEDSEAILEALHAGVSVIVSAHGWTISDL 257
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPT 375
+K PSL++ L +E+A R V+ + RKGP T
Sbjct: 258 MKRPSLKL---------LWEEKAFDRYVELS--RRKGPGT 286
>gi|410722781|ref|ZP_11362034.1| stage III sporulation protein AA [Clostridium sp. Maddingley
MBC34-26]
gi|410603777|gb|EKQ58203.1| stage III sporulation protein AA [Clostridium sp. Maddingley
MBC34-26]
Length = 306
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 36/241 (14%)
Query: 135 KPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS-----DDNRSGID--RSLHRIS---- 183
KP+ + I I ED++ + K+ ++S +D R G + HRI
Sbjct: 37 KPIIVYSKHGESIMNYISTKEDMRSIVQKISNYSLYAYEEDIRQGFITIKGGHRIGIAGE 96
Query: 184 ---------AIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKT 231
IRN + + R+ R V G+++ + + I ++I PP GKT
Sbjct: 97 CVMEKGEVKTIRN----ISSVNVRICREVIGASDKVMKYIASKSRIYNTIIISPPKCGKT 152
Query: 232 TLIREIARMLADD------HMKRVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQH 284
T++R+IAR +++ + K+VV+VD +EIG VP + +G R V + ++
Sbjct: 153 TILRDIARNISNGMSILGLNGKKVVVVDERSEIGACHLGVPQTDLGL--RTDVLDNCLKR 210
Query: 285 SVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
+I A+ + PE +I DEIGT+ + + GV ++ T HG TI+++ K L L
Sbjct: 211 EGLIMAIRSLSPEVLICDEIGTQGDIESLIMAFNSGVNIITTIHGFTIEDLYKRKVLSDL 270
Query: 345 V 345
+
Sbjct: 271 L 271
>gi|188586330|ref|YP_001917875.1| stage III sporulation protein AA [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351017|gb|ACB85287.1| stage III sporulation protein AA [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 322
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 126/258 (48%), Gaps = 32/258 (12%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS-DDNRSGIDRSL---- 179
L E+ + R + F D +++ Q V+ DL+ +S + + S + I+R
Sbjct: 34 LEEIRLRANRPAMLVFSDKDEILNYQ-VELNDLQKVMSLISENSVYSYQHEINRGFITVT 92
Query: 180 --HRI-----SAIRNRKMQVI----GLTCRVGRAVAGSAEIICD-----LVEGGGSILVI 223
HR+ + +++ ++Q I G+ R+ R + G+ + + D + + L+I
Sbjct: 93 GGHRVGIVGRTYLKSGEIQTIRDVSGINFRIAREIKGAGKKLVDKLIDKRINSFLNTLLI 152
Query: 224 GPPGVGKTTLIREIARMLAD-----DHMKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQV 277
GPPG GKTT++R++ R+L+ D ++ ++D +EI G +P IG R V
Sbjct: 153 GPPGCGKTTILRDLTRLLSTGNKSFDRTFKITLIDERSEISGSVRGIPQKEIGL--RTDV 210
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
+ + M+ AV PE I+ DEIGT+ + A GV+L+ + HG + + ++K
Sbjct: 211 LDGCPKAKGMMMAVRAMSPEIIVTDEIGTKEDINAVKEAMNSGVKLLLSIHGDSYETLLK 270
Query: 338 NPSLQILV--GGIESVTL 353
P + L+ G IE + +
Sbjct: 271 RPGIPELLHDGAIEKLVI 288
>gi|15895363|ref|NP_348712.1| stage III sporulation protein AA [Clostridium acetobutylicum ATCC
824]
gi|337737311|ref|YP_004636758.1| stage III sporulation protein AA, SpoIIIAA [Clostridium
acetobutylicum DSM 1731]
gi|384458819|ref|YP_005671239.1| Stage III sporulation protein AA, SpoIIIAA [Clostridium
acetobutylicum EA 2018]
gi|15025082|gb|AAK80052.1|AE007711_9 Stage III sporulation protein AA, SpoIIIAA [Clostridium
acetobutylicum ATCC 824]
gi|325509508|gb|ADZ21144.1| Stage III sporulation protein AA, SpoIIIAA [Clostridium
acetobutylicum EA 2018]
gi|336291043|gb|AEI32177.1| stage III sporulation protein AA, SpoIIIAA [Clostridium
acetobutylicum DSM 1731]
Length = 305
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 121/263 (46%), Gaps = 29/263 (11%)
Query: 99 IELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLK 158
+ LE +LP ++ RE+ + +L E+ + + KPL +IS I EDLK
Sbjct: 1 MNLEDIFSILPEKIEREVKRISDYNNLQEIRIKV-NKPLIIQIGKKEIISNYIATKEDLK 59
Query: 159 HAISKVGDFS-----DDNRSGID--RSLHRI-----SAIRNRKMQVI----GLTCRVGRA 202
+ + +S D+ R G + HR+ + K++ I L R+ +
Sbjct: 60 KTFNVMSGYSIYSVEDELRQGYITIKGGHRVGICGDCVLEENKIKTIKNISSLNIRICKE 119
Query: 203 VAGSAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLA------DDHMKRVVIVD 253
V G + I + G ++L +I PP GKTTL+R+I R ++ K+V ++D
Sbjct: 120 VTGCSNSIMKKIVYGNTVLNTIIISPPNCGKTTLLRDITRNISYGINSIQFRGKKVCVID 179
Query: 254 TSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALA 312
+EIG V IG R + N +M+ A+ + PE II DEIGT + +
Sbjct: 180 ERSEIGACLNGVNQMDIG-IRTDILDNCPKSIGIMM-AIRSMAPEVIICDEIGTYDDIKS 237
Query: 313 ASTIAQRGVQLVGTAHGMTIDNI 335
T GV+L+ T HG I+++
Sbjct: 238 ILTAVNCGVKLITTIHGFGIEDL 260
>gi|381210320|ref|ZP_09917391.1| stage III sporulation protein AA [Lentibacillus sp. Grbi]
Length = 325
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 14/180 (7%)
Query: 173 SGIDRSLH-RISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI--LVIGPPGVG 229
SG +LH ++ AIR+ + R+ + G+A + + + L+IGPP G
Sbjct: 94 SGKVNTLHGQVKAIRH----ITFFNIRIAKQTIGAALPLIPYLYHNKYVNTLIIGPPQTG 149
Query: 230 KTTLIREIARMLADDHMK----RVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQH 284
KTTLIR++ARM+ K +V +VD +EIGG +P +G R V + +
Sbjct: 150 KTTLIRDLARMIGSGWDKAGAHKVGVVDERSEIGGSHKGIPQHDLGV--RTDVMDACPKD 207
Query: 285 SVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
M+ + + PE +++DEIG+E + A GV +V T H +++ + K PSL+ L
Sbjct: 208 EGMMMMIRSMSPEVLVVDEIGSESDVQALMEAVNAGVAVVCTIHSSSLEALKKRPSLKPL 267
>gi|332981353|ref|YP_004462794.1| stage III sporulation protein AA [Mahella australiensis 50-1 BON]
gi|332699031|gb|AEE95972.1| stage III sporulation protein AA [Mahella australiensis 50-1 BON]
Length = 332
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 16/174 (9%)
Query: 183 SAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS----ILVIGPPGVGKTTLIREIA 238
SAIR K + GL R+GR + G A+ + + + LV+ PP GKTTL+R+IA
Sbjct: 126 SAIRTIK-YISGLNVRIGRELIGVADRVMRFIIDSDAKPLHTLVVSPPQCGKTTLLRDIA 184
Query: 239 RMLADDHM----KRVVIVDTSNEIGGDGDVPHSGIGR---ARRMQVPNVNMQHSVMIEAV 291
R L+D ++VVIVD +E+ G + GI + R V + + + ++ A+
Sbjct: 185 RQLSDGCSACIPRKVVIVDERSELAG----SYMGIAQNDVGIRTDVLDACPKAAGIMMAI 240
Query: 292 ENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
P+ I+ DEIG + + A G+ +V +AHG I +I P L+ L+
Sbjct: 241 RAMSPDVIVTDEIGRQEDVYAIEEALNSGIIVVASAHGKDISDISNRPILKQLM 294
>gi|384044940|ref|YP_005492957.1| stage III sporulation protein AA [Bacillus megaterium WSH-002]
gi|345442631|gb|AEN87648.1| Stage III sporulation protein AA [Bacillus megaterium WSH-002]
Length = 315
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGGD-GDVPHSGIGR 271
S ++IGPP GKTT+IR++AR+++ + +V IVD +EI G VP G
Sbjct: 139 STVIIGPPQTGKTTMIRDLARVISTGIERSKIPPFKVGIVDERSEIAGAVKGVPQHTFGS 198
Query: 272 ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331
RM + + + M+ + + P+ +I+DE+G+E + A GV+++ T HG
Sbjct: 199 --RMDLLDSCPKAEGMMMMIRSMSPDVLIVDEVGSEEDCKAVLEAVNAGVRVIMTVHGYD 256
Query: 332 IDNIVKNPSLQILV 345
ID+++K P+LQ L+
Sbjct: 257 IDDLMKRPTLQALM 270
>gi|294501214|ref|YP_003564914.1| stage III sporulation protein AA [Bacillus megaterium QM B1551]
gi|295706561|ref|YP_003599636.1| stage III sporulation protein AA [Bacillus megaterium DSM 319]
gi|294351151|gb|ADE71480.1| stage III sporulation protein AA [Bacillus megaterium QM B1551]
gi|294804220|gb|ADF41286.1| stage III sporulation protein AA [Bacillus megaterium DSM 319]
Length = 315
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGGD-GDVPHSGIGR 271
S ++IGPP GKTT+IR++AR+++ + +V IVD +EI G VP G
Sbjct: 139 STVIIGPPQTGKTTMIRDLARVISTGIERSKIPPFKVGIVDERSEIAGAVKGVPQHTFGS 198
Query: 272 ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331
RM + + + M+ + + P+ +I+DE+G+E + A GV+++ T HG
Sbjct: 199 --RMDLLDSCPKAEGMMMMIRSMSPDVLIVDEVGSEEDCKAVLEAVNAGVRVIMTVHGYD 256
Query: 332 IDNIVKNPSLQILV 345
ID+++K P+LQ L+
Sbjct: 257 IDDLMKRPTLQALM 270
>gi|415885462|ref|ZP_11547390.1| stage III sporulation protein AA [Bacillus methanolicus MGA3]
gi|387591131|gb|EIJ83450.1| stage III sporulation protein AA [Bacillus methanolicus MGA3]
Length = 307
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 111/233 (47%), Gaps = 27/233 (11%)
Query: 135 KPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS------DDNRSGIDRSL-HRIS---- 183
+PL G + V+ ED H ++K+ +S + R I S HR+
Sbjct: 36 RPLEVTMKGSPLFLPYTVQPEDALHLLNKISGYSIYTLEEELKRGYITISGGHRVGLAGK 95
Query: 184 -AIRNRKMQVI----GLTCRVGRAVAGSAEIICDLVEGGGSI--LVIGPPGVGKTTLIRE 236
+ N +++ I R+ R G A+ + + G + ++IGPP GKTTL+R+
Sbjct: 96 VILENSQVKAIRDISSFNIRIARERIGIADPLVPFLFDNGWLHTMIIGPPQTGKTTLLRD 155
Query: 237 IARMLADDH------MKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIE 289
IAR+++ + +V IVD +EI G +P G R+ V + + M+
Sbjct: 156 IARIISTGNDALGLSASKVGIVDERSEIAGCVKGIPQLTFGN--RIDVLDACPKAEGMMM 213
Query: 290 AVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
+ + P+ +++DEIG E +ALA G++L+ T HG ++ I K PSL+
Sbjct: 214 MIRSMSPDVLVVDEIGREEDALAIMEAVNAGIKLIMTTHGSSLLEIRKRPSLK 266
>gi|394992156|ref|ZP_10384948.1| stage III sporulation protein AA [Bacillus sp. 916]
gi|429505855|ref|YP_007187039.1| stage III sporulation protein AA [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|393806985|gb|EJD68312.1| stage III sporulation protein AA [Bacillus sp. 916]
gi|429487445|gb|AFZ91369.1| stage III sporulation protein AA [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 307
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 20/193 (10%)
Query: 192 VIGLTCRVGRAVAGSAEIICDLV--EGGGSILVIGPPGVGKTTLIREIARMLADDH---- 245
+ R+ R G AE + + E + L+IGPP GKTTL+R++AR+ +
Sbjct: 109 ITSFNIRIAREKLGIAEPLIPFLWKENWLNTLIIGPPQTGKTTLLRDLARLSSTGSKRIP 168
Query: 246 MKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
K+ IVD +EI G +P GR R+ V + + ++ + + P+ II+DEI
Sbjct: 169 AKKTGIVDERSEIAGCLRGIPQHSFGR--RIDVLDACPKAEGLMMMIRSMSPDVIIVDEI 226
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
G ++ A GV ++ +AHG + ++VK PSL++ L +E R V+
Sbjct: 227 GRMEDSQALLEALHAGVSVIVSAHGWNMKDLVKRPSLKM---------LWEENVFDRYVE 277
Query: 365 KTILERKGPPTFT 377
+ R+GP T +
Sbjct: 278 LS--RRRGPGTIS 288
>gi|399889154|ref|ZP_10775031.1| stage III sporulation protein AA [Clostridium arbusti SL206]
Length = 306
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 127/264 (48%), Gaps = 31/264 (11%)
Query: 99 IELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDW-VISEQIVKHEDL 157
I ++ L++LP ++ +EL L E+ + + KPL F G+ VI V HED+
Sbjct: 2 INIKNILDVLPQNIKNITATLKELEKLQEIRLKV-NKPLI-FQLGEREVIGNYNVTHEDI 59
Query: 158 KHAISKVGDFS-----DDNRSGID--RSLHRI-----SAIRNRKMQVI----GLTCRVGR 201
+ + ++ ++S D+ + G + HR+ I N +++ I L R+ R
Sbjct: 60 SNILKRMSNYSIYSIEDEIKQGYITIKGGHRVGICGNCIIENNRVKTIKDISSLNIRICR 119
Query: 202 AVAGSAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLA---DDHM---KRVVIV 252
+ G + I + +IL +I PP GKTTLIR+I R ++ D+ + K V ++
Sbjct: 120 EIIGCSNKIMPWILKDKNILNTIIISPPKCGKTTLIRDITRNISNGMDNTLLKGKNVCVI 179
Query: 253 DTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEAL 311
D +EI D +P +G R + N +M+ A+ + P+ I+ DEIGT +
Sbjct: 180 DERSEICASSDGIPQLNVG-IRTDVMDNCPKSQGIMM-AIRSMAPDVIVCDEIGTYDDVK 237
Query: 312 AASTIAQRGVQLVGTAHGMTIDNI 335
+ GV L+ T HG I+++
Sbjct: 238 SILAALNCGVNLITTIHGFGIEDL 261
>gi|452856213|ref|YP_007497896.1| ATP-binding stage III sporulation protein [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452080473|emb|CCP22236.1| ATP-binding stage III sporulation protein [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 307
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 20/193 (10%)
Query: 192 VIGLTCRVGRAVAGSAEIICDLV--EGGGSILVIGPPGVGKTTLIREIARMLADDH---- 245
+ R+ R G AE + + E + L+IGPP GKTTL+R++AR+ +
Sbjct: 109 ITSFNIRIAREKLGIAEPLIPFLWKENWLNTLIIGPPQTGKTTLLRDLARLSSTGSKRIP 168
Query: 246 MKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
K+ IVD +EI G +P GR R+ V + + ++ + + P+ II+DEI
Sbjct: 169 AKKTGIVDERSEIAGCLRGIPQHSFGR--RIDVLDACPKAEGLMMMIRSMSPDVIIVDEI 226
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
G ++ A GV ++ +AHG + ++VK PSL++ L +E R V+
Sbjct: 227 GRMEDSQALLEALHAGVSVIVSAHGWNMKDLVKRPSLKM---------LWEENVFDRYVE 277
Query: 365 KTILERKGPPTFT 377
+ R+GP T +
Sbjct: 278 LS--RRRGPGTIS 288
>gi|253578537|ref|ZP_04855809.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850855|gb|EES78813.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 312
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 115/251 (45%), Gaps = 31/251 (12%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVI-----SEQIVKHEDLKHAISKVGDFS-----DDNRSG 174
L E+ + +GR + G+ + + +V EDLK + V +S D+ R G
Sbjct: 31 LYEIRLRVGRPLFLTYDGGECFLRKPGQEQYLVTTEDLKETLEYVTGYSLYAYEDEIRQG 90
Query: 175 ID--RSLHRISAI------RNRKMQVIGLTC---RVGRAVAGSAEIICDLV---EGGGSI 220
+ HR+ R R M + ++C R+ + G A+ + + + +
Sbjct: 91 FISVQGGHRVGVTGKVVLDRGRIMGMKYISCINVRLAHEIQGCADKVMPYIRTEKWVANT 150
Query: 221 LVIGPPGVGKTTLIREIARML----ADDHMKRVVIVDTSNEIGGDGD-VPHSGIGRARRM 275
L+I PP GKTTL+R+I R L A+ + +VD +E+ G +P + +G R
Sbjct: 151 LIISPPRCGKTTLLRDIIRQLSNGWANTQGLTIGVVDERSELAGCYQGIPQNDLGM--RT 208
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + M V + P+ + +DE+G E + A ++ G +L+ TAHG ++++
Sbjct: 209 DVLDCCPKSEGMQMLVRSMSPDVVAVDELGCEEDFKAVDSVIHCGCKLIATAHGSCLEDV 268
Query: 336 VKNPSLQILVG 346
+ P L+G
Sbjct: 269 LDQPFFYKLMG 279
>gi|385265443|ref|ZP_10043530.1| ATPase family associated with various cellular activities (AAA)
[Bacillus sp. 5B6]
gi|385149939|gb|EIF13876.1| ATPase family associated with various cellular activities (AAA)
[Bacillus sp. 5B6]
Length = 307
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 20/193 (10%)
Query: 192 VIGLTCRVGRAVAGSAEIICDLV--EGGGSILVIGPPGVGKTTLIREIARMLADDH---- 245
+ R+ R G AE + + E + L+IGPP GKTTL+R++AR+ +
Sbjct: 109 ITSFNIRIAREKLGIAEPLIPFLWKENWLNTLIIGPPQTGKTTLLRDLARLSSTGSKRIP 168
Query: 246 MKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
K+ IVD +EI G +P GR R+ V + + ++ + + P+ II+DEI
Sbjct: 169 AKKTGIVDERSEIAGCLRGIPQHSFGR--RIDVLDACPKAEGLMMMIRSMSPDVIIVDEI 226
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
G ++ A GV ++ +AHG + ++VK PSL++ L +E R V+
Sbjct: 227 GRMEDSQALLEALHAGVSVIVSAHGWNMKDLVKRPSLKM---------LWEENVFDRYVE 277
Query: 365 KTILERKGPPTFT 377
+ R+GP T +
Sbjct: 278 LS--RRRGPGTIS 288
>gi|238917027|ref|YP_002930544.1| stage III sporulation protein AA [Eubacterium eligens ATCC 27750]
gi|238872387|gb|ACR72097.1| stage III sporulation protein AA [Eubacterium eligens ATCC 27750]
Length = 289
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 5/146 (3%)
Query: 190 MQVIGLTCRVGRAVAGSAEIICD--LVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247
+ V + R+ + + G A+ I D L +G ++I PPG GKTTL+R+I R L+D + K
Sbjct: 112 LHVTFMCIRIAKQMKGCADNIMDELLKDGLKHTIIISPPGFGKTTLLRDIIRQLSDIYRK 171
Query: 248 RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
VV++D EI VP + IG R + N V + AV + P+ + +DEIG
Sbjct: 172 NVVLIDERCEIAACVNGVPCNDIG-CRTDVLDGCNKLTGVYM-AVRSLSPQVVAMDEIGG 229
Query: 307 ELEALAASTIAQRGVQLVGTAHGMTI 332
E + A + G ++GTAHG I
Sbjct: 230 EDDIKAVKYCIKSGCAVIGTAHGSGI 255
>gi|375362979|ref|YP_005131018.1| Stage III sporulation protein AA [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421731034|ref|ZP_16170160.1| stage III sporulation protein AA [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|371568973|emb|CCF05823.1| Stage III sporulation protein AA [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407075188|gb|EKE48175.1| stage III sporulation protein AA [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 307
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 20/193 (10%)
Query: 192 VIGLTCRVGRAVAGSAEIICDLV--EGGGSILVIGPPGVGKTTLIREIARMLADDH---- 245
+ R+ R G AE + + E + L+IGPP GKTTL+R++AR+ +
Sbjct: 109 ITSFNIRIAREKLGIAEPLIPFLWKENWLNTLIIGPPQTGKTTLLRDLARLSSTGSKRIP 168
Query: 246 MKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
K+ IVD +EI G +P GR R+ V + + ++ + + P+ II+DEI
Sbjct: 169 AKKTGIVDERSEIAGCLRGIPQHSFGR--RVDVLDACPKAEGLMMMIRSMSPDVIIVDEI 226
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
G ++ A GV ++ +AHG + ++VK PSL++ L +E R V+
Sbjct: 227 GRMEDSQALLEALHAGVSVIVSAHGWNMKDLVKRPSLKM---------LWEENVFDRYVE 277
Query: 365 KTILERKGPPTFT 377
+ R+GP T +
Sbjct: 278 LS--RRRGPGTIS 288
>gi|225025911|ref|ZP_03715103.1| hypothetical protein EUBHAL_00147 [Eubacterium hallii DSM 3353]
gi|224956697|gb|EEG37906.1| putative stage III sporulation protein AA [Eubacterium hallii DSM
3353]
Length = 320
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 198 RVGRAVAGSAEIIC-DLVEGG--GSILVIGPPGVGKTTLIREIARMLAD--DHM--KRVV 250
RV R V G AE I L EG L+I PPG GKTT +R+I R+L+D D + K V
Sbjct: 136 RVAREVIGCAECIVPKLFEGNTFCHTLLISPPGCGKTTYLRDIIRLLSDGTDTITGKNVA 195
Query: 251 IVDTSNEIGGDGDVPHSGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTEL 308
+VD +EI G+ GIG R + + + + M+ + PE + DEIG E
Sbjct: 196 VVDERSEI---GNRTREGIGFYLGNRTDLMDHCPKAAGMLMMLRTMTPEILAADEIGGEK 252
Query: 309 EALAASTIAQRGVQLVGTAHGMTIDNIVKNPSL 341
+ A + + G +L+ T HG ++ +I P L
Sbjct: 253 DIKAMAYVRNCGCRLLMTVHGNSMQDIFARPVL 285
>gi|359412675|ref|ZP_09205140.1| stage III sporulation protein AA [Clostridium sp. DL-VIII]
gi|357171559|gb|EHI99733.1| stage III sporulation protein AA [Clostridium sp. DL-VIII]
Length = 309
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 122/258 (47%), Gaps = 38/258 (14%)
Query: 115 ELCMHRELGDLI-EVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS----- 168
EL R L + I E + +G+ L G+ +++ K ED+K I ++ +S
Sbjct: 20 ELLRERLLNEQIHEFRLKIGQPILVYSKYGESIVNYFPTK-EDMKSMIQRISSYSLYAYE 78
Query: 169 DDNRSGID--RSLHRIS-------------AIRNRKMQVIGLTCRVGRAVAGSAEIICDL 213
+D R G + HRI IRN + + R+ R V G ++ +
Sbjct: 79 EDIRQGFITIKGGHRIGIAGECVMEKGEVKTIRN----ISSINVRICREVIGCSDKVMKY 134
Query: 214 VEGGGSI---LVIGPPGVGKTTLIREIARMLADD------HMKRVVIVDTSNEIGG-DGD 263
+ I +VI PP GKTT++R+IAR +++ + ++VV++D +EIG
Sbjct: 135 IASSHRIYNTIVISPPKCGKTTILRDIARNISNGVSSLGLNGRKVVVIDERSEIGACHFG 194
Query: 264 VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQL 323
VP S +G R V + ++ +I A+ + PE +I DEIGT+ + A GV +
Sbjct: 195 VPQSDLGI--RTDVLDNCLKREGLIMAIRSLSPEVLICDEIGTKGDIEALIMAFNSGVNI 252
Query: 324 VGTAHGMTIDNIVKNPSL 341
+ T HG TI+++ K L
Sbjct: 253 ITTIHGFTIEDLYKRKVL 270
>gi|384266059|ref|YP_005421766.1| Stage III sporulation protein AA [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387899079|ref|YP_006329375.1| stage III sporulation protein AA [Bacillus amyloliquefaciens Y2]
gi|380499412|emb|CCG50450.1| Stage III sporulation protein AA [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387173189|gb|AFJ62650.1| stage III sporulation protein AA [Bacillus amyloliquefaciens Y2]
Length = 307
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 20/193 (10%)
Query: 192 VIGLTCRVGRAVAGSAEIICDLV--EGGGSILVIGPPGVGKTTLIREIARMLADDH---- 245
+ R+ R G AE + + E + L+IGPP GKTTL+R++AR+ +
Sbjct: 109 ITSFNIRIAREKLGIAEPLIPFLWKENWLNTLIIGPPQTGKTTLLRDLARLSSTGSKRIP 168
Query: 246 MKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
K+ IVD +EI G +P GR R+ V + + ++ + + P+ II+DEI
Sbjct: 169 AKKTGIVDERSEIAGCLRGIPQHSFGR--RIDVLDACPKAEGLMMMIRSMSPDVIIVDEI 226
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
G ++ A GV ++ +AHG + ++VK PSL++ L +E R V+
Sbjct: 227 GRMEDSQALLEALHAGVSVIVSAHGWNMKDLVKRPSLKM---------LWEENVFDRYVE 277
Query: 365 KTILERKGPPTFT 377
+ R+GP T +
Sbjct: 278 LS--RRRGPGTIS 288
>gi|154686707|ref|YP_001421868.1| hypothetical protein RBAM_022760 [Bacillus amyloliquefaciens FZB42]
gi|154352558|gb|ABS74637.1| SpoIIIAA [Bacillus amyloliquefaciens FZB42]
Length = 307
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 20/193 (10%)
Query: 192 VIGLTCRVGRAVAGSAEIICDLV--EGGGSILVIGPPGVGKTTLIREIARMLADDH---- 245
+ R+ R G AE + + E + L+IGPP GKTTL+R++AR+ +
Sbjct: 109 ITSFNIRIAREKLGIAEPLIPFLWKENWLNTLIIGPPQTGKTTLLRDLARLSSTGSKRIP 168
Query: 246 MKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
K+ IVD +EI G +P GR R+ V + + ++ + + P+ II+DEI
Sbjct: 169 AKKTGIVDERSEIAGCLRGIPQHSFGR--RIDVLDACPKAEGLMMMIRSMSPDVIIVDEI 226
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
G ++ A GV ++ +AHG + ++VK PSL++ L +E R V+
Sbjct: 227 GRMEDSQALLEALHAGVSVIVSAHGWDMKDLVKRPSLKM---------LWEENVFDRYVE 277
Query: 365 KTILERKGPPTFT 377
+ R+GP T +
Sbjct: 278 LS--RRRGPGTIS 288
>gi|56964243|ref|YP_175974.1| stage III sporulation protein AA [Bacillus clausii KSM-K16]
gi|56910486|dbj|BAD65013.1| stage III sporulation protein AA [Bacillus clausii KSM-K16]
Length = 309
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 14/162 (8%)
Query: 195 LTCRVGRAVAGSAEIICDLV-----EGGGSILVIGPPGVGKTTLIREIARMLADDHMK-- 247
R+ R G+AE + D + + L+IGPP GKTT++R++AR+++ K
Sbjct: 116 FNVRIARQKIGAAEKVIDKLYDRQTRSWQNALLIGPPQTGKTTVLRDVARIVSTGSKKNH 175
Query: 248 ----RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
+V IVD +EI G VP +G R+ V + + M+ + + P+ +I+D
Sbjct: 176 IPSCKVGIVDERSEIAGCVAGVPQHELGV--RVDVLDGCPKAEGMMMLIRSMSPDVLIVD 233
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
EIG E + A GV L+ TAHG T++++ K P + L
Sbjct: 234 EIGREEDVKAILEARHAGVSLIATAHGHTLEDVAKRPVFKGL 275
>gi|220929335|ref|YP_002506244.1| stage III sporulation protein AA [Clostridium cellulolyticum H10]
gi|219999663|gb|ACL76264.1| stage III sporulation protein AA [Clostridium cellulolyticum H10]
Length = 331
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 44/252 (17%)
Query: 121 ELGDLIEVVMDLGRKPLARFPSGDWVISE-----------------QIVKHEDLKHAISK 163
EL +L E+ + G+ + + DW ++E +IVK +L +
Sbjct: 35 ELNNLEEIRLRAGKPLMVFYKRNDWFVAENGRLSRSLSEAYMVDQKEIVKTLELMSE-NS 93
Query: 164 VGDFSDDNRSGID--RSLHRIS----------AIRNRKMQVIGLTCRVGRAVAGSAEIIC 211
+ + D+ +SG R HRI IRN K G+ R+ R V G A I
Sbjct: 94 IYAYQDEIKSGYLTLRGGHRIGLSGRVVLQEGKIRNIK-DFNGINIRIAREVKGCANHII 152
Query: 212 DLVEGGGS----ILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGGD 261
+ S L++GPP GKTT++R+++RML+ + +V IVD +EI
Sbjct: 153 KYIIKNNSDTYNTLIVGPPQCGKTTILRDLSRMLSSGETEYGFSGMKVGIVDERSEIAAC 212
Query: 262 GD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRG 320
VP S +G R V + + M + + PE II DEIGT + A + G
Sbjct: 213 CKGVPQSDVGY--RTDVMDGCPKALGMEMLLRSMSPEIIITDEIGTHGDKEAILKVLNSG 270
Query: 321 VQLVGTAHGMTI 332
++++ +AHG I
Sbjct: 271 IKIIASAHGYNI 282
>gi|291559558|emb|CBL38358.1| stage III sporulation protein AA [butyrate-producing bacterium
SSC/2]
Length = 308
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 23/189 (12%)
Query: 194 GLTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMKRVV 250
GL RV V G A+I+ G + L+I PPG GKTTL+R++ R ++D+ + V
Sbjct: 124 GLNIRVAHEVKGCADILYSRCTRMGKLIPTLIISPPGCGKTTLLRDMIRKISDEG-QTVG 182
Query: 251 IVDTSNEIGGDGDVPHSGIGR---ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307
+VD +EIG + G+ + + V + + M + + P+ I +DEIG++
Sbjct: 183 VVDERSEIGA----CYQGVAQNDLGIQTDVMDACEKGQGMNMLIRSMAPDVIAVDEIGSK 238
Query: 308 LEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTI 367
+ A A RG ++ TAHG +++ KNP ++ ++ KK + I
Sbjct: 239 EDVEALFFCAYRGCSILATAHGKNKESLSKNPYMREIIN------------KKMFQRYVI 286
Query: 368 LERKGPPTF 376
LE++ P +
Sbjct: 287 LEQRNQPGY 295
>gi|317498108|ref|ZP_07956410.1| stage III sporulation protein AA [Lachnospiraceae bacterium
5_1_63FAA]
gi|316894585|gb|EFV16765.1| stage III sporulation protein AA [Lachnospiraceae bacterium
5_1_63FAA]
Length = 315
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 23/189 (12%)
Query: 194 GLTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMKRVV 250
GL RV V G A+I+ G + L+I PPG GKTTL+R++ R ++D+ + V
Sbjct: 131 GLNIRVAHEVKGCADILYSRCTRMGKLIPTLIISPPGCGKTTLLRDMIRKISDEG-QTVG 189
Query: 251 IVDTSNEIGGDGDVPHSGIGR---ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307
+VD +EIG + G+ + + V + + M + + P+ I +DEIG++
Sbjct: 190 VVDERSEIGA----CYQGVAQNDLGIQTDVMDACEKGQGMNMLIRSMAPDVIAVDEIGSK 245
Query: 308 LEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTI 367
+ A A RG ++ TAHG +++ KNP ++ ++ KK + I
Sbjct: 246 EDVEALFFCAYRGCSILATAHGKNKESLSKNPYMREIIN------------KKMFQRYVI 293
Query: 368 LERKGPPTF 376
LE++ P +
Sbjct: 294 LEQRNQPGY 302
>gi|167767112|ref|ZP_02439165.1| hypothetical protein CLOSS21_01630 [Clostridium sp. SS2/1]
gi|167711087|gb|EDS21666.1| stage III sporulation protein AA [Clostridium sp. SS2/1]
Length = 342
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 23/193 (11%)
Query: 194 GLTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMKRVV 250
GL RV V G A+I+ G + L+I PPG GKTTL+R++ R ++D+ + V
Sbjct: 158 GLNIRVAHEVKGCADILYSRCTRMGKLIPTLIISPPGCGKTTLLRDMIRKISDEG-QTVG 216
Query: 251 IVDTSNEIGGDGDVPHSGIGR---ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307
+VD +EIG + G+ + + V + + M + + P+ I +DEIG++
Sbjct: 217 VVDERSEIGA----CYQGVAQNDLGIQTDVMDACEKGQGMNMLIRSMAPDVIAVDEIGSK 272
Query: 308 LEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTI 367
+ A A RG ++ TAHG +++ KNP ++ ++ KK + I
Sbjct: 273 EDVEALFFCAYRGCSILATAHGKNKESLSKNPYMREIIN------------KKMFQRYVI 320
Query: 368 LERKGPPTFTCAV 380
LE++ P + +
Sbjct: 321 LEQRNQPGYIAQI 333
>gi|451346346|ref|YP_007444977.1| stage III sporulation protein AA [Bacillus amyloliquefaciens IT-45]
gi|449850104|gb|AGF27096.1| stage III sporulation protein AA [Bacillus amyloliquefaciens IT-45]
Length = 307
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
Query: 192 VIGLTCRVGRAVAGSAEIICDLV--EGGGSILVIGPPGVGKTTLIREIARMLADDH---- 245
+ R+ R G AE + + E + L+IGPP GKTTL+R++AR+ +
Sbjct: 109 ITSFNIRIAREKLGIAEPLIPFLWKENWLNTLIIGPPQTGKTTLLRDLARLSSTGSKRIP 168
Query: 246 MKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
K+ IVD +EI G +P GR R+ V + + ++ + + P+ II+DEI
Sbjct: 169 AKKTGIVDERSEIAGCLRGIPQHSFGR--RVDVLDACPKAEGLMMMIRSMSPDVIIVDEI 226
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
G ++ A GV ++ +AHG + ++VK PSL++L
Sbjct: 227 GRMEDSQALLEALHAGVSVIVSAHGWNMKDLVKRPSLKML 266
>gi|402298077|ref|ZP_10817801.1| stage III sporulation protein AA [Bacillus alcalophilus ATCC 27647]
gi|401726721|gb|EJS99937.1| stage III sporulation protein AA [Bacillus alcalophilus ATCC 27647]
Length = 310
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 11/158 (6%)
Query: 197 CRVGRAVAGSAE-IICDLVEGGG-SILVIGPPGVGKTTLIREIARMLADDHMKR------ 248
RV R G A+ +I + E + L+IGPP GKTTL+R+IAR++++ K+
Sbjct: 120 IRVARQTIGVADKLISQIFEKEWLNTLIIGPPQTGKTTLLRDIARLISEGDRKKGIQPLK 179
Query: 249 VVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307
V IVD +EI VP +G R+ V + + M+ + P+ II+DEIG E
Sbjct: 180 VGIVDERSEIAASVKGVPQHRLGD--RVDVLDGCPKVEGMMMLIRTMSPDVIIVDEIGRE 237
Query: 308 LEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+ +A GV+++ TAHG ++ ++ + P+L+ L+
Sbjct: 238 EDRIAIEEAMYAGVKVITTAHGHSVHDLKRRPALKGLI 275
>gi|319651504|ref|ZP_08005632.1| stage III sporulation protein AA [Bacillus sp. 2_A_57_CT2]
gi|317396819|gb|EFV77529.1| stage III sporulation protein AA [Bacillus sp. 2_A_57_CT2]
Length = 307
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 38/240 (15%)
Query: 151 IVKHEDLKHAISKVGDFS----------------DDNRSGIDRSL----HRISAIRNRKM 190
IV+ ED H ++K+ FS +R G+ + ++ AIR+
Sbjct: 52 IVESEDAVHLLNKISHFSIYTLEEELKRGYITIEGGHRVGLAGKVILEQGKVKAIRD--- 108
Query: 191 QVIGLTCRVGRAVAGSAEIICDLV--EGGGSILVIGPPGVGKTTLIREIARMLA------ 242
+ R+ R G A+ + + +G ++IGPP GKTTL+R+IAR+++
Sbjct: 109 -ISSFNIRIAREKIGIAQNLIPRIYRDGWLHTMIIGPPQTGKTTLLRDIARIISSGDPNN 167
Query: 243 DDHMKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIII 301
D +V IVD +EI G +P G R+ V + + M+ + + PE +++
Sbjct: 168 DFPASKVGIVDERSEIAGCVNGIPQMTFGN--RIDVLDACPKAEGMMMMIRSMSPEVLVV 225
Query: 302 DEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ-ILVGGI--ESVTLGDEEA 358
DEIG +A A G++L+ T HG +++ I K P+L+ IL GI + LG +E
Sbjct: 226 DEIGRHEDAEAIMEAVNAGIKLIMTTHGNSLEEIKKRPTLKAILEMGIFQRFIELGRKEG 285
>gi|333370541|ref|ZP_08462536.1| stage III sporulation protein AA [Desmospora sp. 8437]
gi|332977550|gb|EGK14320.1| stage III sporulation protein AA [Desmospora sp. 8437]
Length = 321
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 9/161 (5%)
Query: 192 VIGLTCRVGRAVAGSAEIICDLVEGGG---SILVIGPPGVGKTTLIREIARMLADDHM-- 246
V G RV R V G A + + GG +IL++ PP GKTTL+R++ R+++
Sbjct: 122 VTGFNLRVARQVKGVARRLLSRILPGGQLENILIVSPPQCGKTTLLRDLTRIVSSGETIP 181
Query: 247 -KRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
++V +VD +EI G + VP +G R V + + M+ + + PE +++DEI
Sbjct: 182 SRKVGVVDERSEIAGCVEGVPQHDVGP--RTDVLDGCPKAEGMMMLIRSMSPELLVVDEI 239
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
G + A GV L TAHG +++ + + P + LV
Sbjct: 240 GRREDGEAVFEAVHAGVSLFTTAHGSSMEEVCRRPGIAQLV 280
>gi|374296405|ref|YP_005046596.1| stage III sporulation protein AA [Clostridium clariflavum DSM
19732]
gi|359825899|gb|AEV68672.1| stage III sporulation protein AA [Clostridium clariflavum DSM
19732]
Length = 340
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 104/210 (49%), Gaps = 27/210 (12%)
Query: 149 EQIVKHEDLKHAISKVGDFSDDNRSGID--RSLHRI----------SAIRNRKMQVIGLT 196
EQIVK +L S + F D+ R+G R HR+ + I+N K + GL
Sbjct: 85 EQIVKTLELISENS-IYAFQDEIRNGYITLRGGHRVGITGKAVLDGTGIKNLK-DISGLN 142
Query: 197 CRVGRAVAG-SAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMK----- 247
RV R V G S+EI+ +V+G I L+I PP GKTT++R+IAR ++D +
Sbjct: 143 IRVSREVRGCSSEILKYIVQGENEIYNTLIISPPKCGKTTILRDIARSISDGVAQIGLKG 202
Query: 248 -RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
+V IVD +EI P +G R V + + M + + P+ II DEIG
Sbjct: 203 LKVGIVDERSEIAACFKGSPQKQVGV--RTDVLDACPKQLGMSMLLRSMSPDVIITDEIG 260
Query: 306 TELEALAASTIAQRGVQLVGTAHGMTIDNI 335
+ + A + GV++V TAHG +I +
Sbjct: 261 SSGDKEALMQVINAGVKIVTTAHGYSISQL 290
>gi|398311387|ref|ZP_10514861.1| stage III sporulation protein AA [Bacillus mojavensis RO-H-1]
Length = 307
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 22/194 (11%)
Query: 192 VIGLTCRVGRAVAGSAEIICDLVEGGGSI--LVIGPPGVGKTTLIREIARMLADDHMKRV 249
+ R+ R G AE + + G + L+IGPP GKTTL+R++AR LA R+
Sbjct: 109 IASFNIRIARQKLGIAEPLLTYLHQNGWLNTLIIGPPQTGKTTLLRDLAR-LASSGKNRI 167
Query: 250 V-----IVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
IVD +EI G +P G+ R+ V + + ++ + + PE II+DE
Sbjct: 168 APVKTGIVDERSEIAGCLRGIPQHQFGQ--RIDVLDACPKAEGLMMMIRSMSPEVIIVDE 225
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKV 363
IG + A GV ++ +AHG +I +++K PSL+ L +E+A R +
Sbjct: 226 IGRAEDTDALLEALHAGVSVIVSAHGWSISDLMKRPSLK---------RLWEEKAFDRYL 276
Query: 364 QKTILERKGPPTFT 377
+ + KGP T +
Sbjct: 277 ELS--RTKGPGTIS 288
>gi|308174238|ref|YP_003920943.1| ATP-binding stage III sporulation protein [Bacillus
amyloliquefaciens DSM 7]
gi|384160096|ref|YP_005542169.1| stage III sporulation protein AA [Bacillus amyloliquefaciens TA208]
gi|384165021|ref|YP_005546400.1| ATP-binding stage III sporulation protein [Bacillus
amyloliquefaciens LL3]
gi|384169160|ref|YP_005550538.1| stage III sporulation protein AA [Bacillus amyloliquefaciens XH7]
gi|307607102|emb|CBI43473.1| ATP-binding stage III sporulation protein [Bacillus
amyloliquefaciens DSM 7]
gi|328554184|gb|AEB24676.1| stage III sporulation protein AA [Bacillus amyloliquefaciens TA208]
gi|328912576|gb|AEB64172.1| ATP-binding stage III sporulation protein [Bacillus
amyloliquefaciens LL3]
gi|341828439|gb|AEK89690.1| stage III sporulation protein AA [Bacillus amyloliquefaciens XH7]
Length = 307
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 20/193 (10%)
Query: 192 VIGLTCRVGRAVAGSAEIICDLV--EGGGSILVIGPPGVGKTTLIREIARMLADDH---- 245
+ R+ R G AE + + E + L+IGPP GKTTL+R++AR+ +
Sbjct: 109 ITSFNIRIAREKLGIAEPLIPFLWKENWLNTLIIGPPQTGKTTLLRDLARLSSTGSKRIP 168
Query: 246 MKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
K+ I+D +EI G +P GR R+ V + + ++ + + P+ +I+DEI
Sbjct: 169 AKKTGIIDERSEIAGCLRGIPQHSFGR--RVDVLDACPKAEGLMMMIRSMSPDVMIVDEI 226
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
G ++ A GV ++ +AHG + ++VK PSL++ L +E+ R V+
Sbjct: 227 GRIEDSEALMEALHAGVSVIVSAHGWNMKDLVKRPSLKM---------LWEEKVFDRYVE 277
Query: 365 KTILERKGPPTFT 377
+ R+GP T +
Sbjct: 278 LS--RRRGPGTIS 288
>gi|254974727|ref|ZP_05271199.1| stage III sporulation protein AA [Clostridium difficile QCD-66c26]
gi|255092116|ref|ZP_05321594.1| stage III sporulation protein AA [Clostridium difficile CIP 107932]
gi|255313853|ref|ZP_05355436.1| stage III sporulation protein AA [Clostridium difficile QCD-76w55]
gi|255516534|ref|ZP_05384210.1| stage III sporulation protein AA [Clostridium difficile QCD-97b34]
gi|255649634|ref|ZP_05396536.1| stage III sporulation protein AA [Clostridium difficile QCD-37x79]
gi|260682798|ref|YP_003214083.1| stage III sporulation protein AA [Clostridium difficile CD196]
gi|260686396|ref|YP_003217529.1| stage III sporulation protein AA [Clostridium difficile R20291]
gi|306519751|ref|ZP_07406098.1| stage III sporulation protein AA [Clostridium difficile QCD-32g58]
gi|384360380|ref|YP_006198232.1| stage III sporulation protein AA [Clostridium difficile BI1]
gi|260208961|emb|CBA61998.1| stage III sporulation protein AA [Clostridium difficile CD196]
gi|260212412|emb|CBE03268.1| stage III sporulation protein AA [Clostridium difficile R20291]
Length = 322
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 151 IVKHEDLKHAISKVGDFS-----DDNRSGID--RSLHRIS----------AIRNRKMQVI 193
+V ED++ + +S DD + G R HR+ ++N K +
Sbjct: 68 VVTREDVEQTFQIICKYSIHSFMDDIKKGFITLRGGHRVGLVGKAIVEDGQVKNIK-HIS 126
Query: 194 GLTCRVGRAVAG-SAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMK-- 247
L RV R + G S +I+ +++G I L+I PP GKTTLIR+I R L++ +
Sbjct: 127 SLNIRVSREIIGCSDKILSHIIKGKNQINNTLIISPPQCGKTTLIRDIVRNLSNGNEDYG 186
Query: 248 ----RVVIVDTSNEIGGDG-DVPHSGIG-RARRMQVPNVNMQHSVMIEAVENHMPETIII 301
+V +VD NEI G VP +G R ++ ++ ++++ ++ P I+
Sbjct: 187 FKGLKVALVDERNEIAGAYLGVPQMDVGIRTDIIETCPKDLGITMLLRSMS---PNVIVT 243
Query: 302 DEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
DEIG+E E A T G+ L+ T HG +ID+I L L+
Sbjct: 244 DEIGSEKEIKALYTALNGGIGLITTVHGDSIDDIQNRKELNRLL 287
>gi|255655197|ref|ZP_05400606.1| stage III sporulation protein AA [Clostridium difficile QCD-23m63]
gi|296451182|ref|ZP_06892923.1| stage III sporulation protein AA [Clostridium difficile NAP08]
gi|296880466|ref|ZP_06904428.1| stage III sporulation protein AA [Clostridium difficile NAP07]
gi|296260003|gb|EFH06857.1| stage III sporulation protein AA [Clostridium difficile NAP08]
gi|296428420|gb|EFH14305.1| stage III sporulation protein AA [Clostridium difficile NAP07]
Length = 322
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 151 IVKHEDLKHAISKVGDFS-----DDNRSGID--RSLHRIS----------AIRNRKMQVI 193
+V ED++ + +S DD + G R HR+ ++N K +
Sbjct: 68 VVTREDVEQTFQIICKYSIHSFMDDIKKGFITLRGGHRVGLVGKVIVEDGQVKNIK-HIS 126
Query: 194 GLTCRVGRAVAG-SAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMK-- 247
L RV R + G S +I+ +++G I L+I PP GKTTLIR+I R L++ +
Sbjct: 127 SLNIRVSREIIGCSDKILSHIIKGKNQINNTLIISPPQCGKTTLIRDIVRNLSNGNEDYG 186
Query: 248 ----RVVIVDTSNEIGGDG-DVPHSGIG-RARRMQVPNVNMQHSVMIEAVENHMPETIII 301
+V +VD NEI G VP +G R ++ ++ ++++ ++ P I+
Sbjct: 187 FKGLKVALVDERNEIAGAYLGVPQMDVGIRTDIIETCPKDLGITMLLRSMS---PNVIVT 243
Query: 302 DEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
DEIG+E E A T G+ L+ T HG +ID+I L L+
Sbjct: 244 DEIGSEKEIKALYTALNGGIGLITTVHGDSIDDIQNRKELNRLL 287
>gi|150016566|ref|YP_001308820.1| sporulation stage III, protein AA [Clostridium beijerinckii NCIMB
8052]
gi|149903031|gb|ABR33864.1| Sporulation stage III, protein AA [Clostridium beijerinckii NCIMB
8052]
Length = 306
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 45/269 (16%)
Query: 107 LLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGD 166
LL R+ +E + E+ + +G+ L G+ +I+ I ED+K + KV +
Sbjct: 18 LLKDRLNKE--------QVYELRIKIGKPILVYSKYGESIIN-YISTKEDMKSIMQKVSN 68
Query: 167 FS-----DDNRSGID--RSLHRIS-------------AIRNRKMQVIGLTCRVGRAVAGS 206
+S +D R G + HRI IRN + + R+ R V G
Sbjct: 69 YSLYAYEEDIRQGFITIKGGHRIGIAGECVMEKGEVKTIRN----ISSVNIRICREVIGC 124
Query: 207 AEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDH------MKRVVIVDTSNE 257
+ + + + ++I PP GKTT++R+IAR ++ K+V ++D +E
Sbjct: 125 SNKVMKYIISAYKVYNTIIISPPKCGKTTILRDIARNISSGMPSLGIAGKKVAVIDERSE 184
Query: 258 IGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI 316
IG +P S +G R V + ++ +I A+ + PE +I DEIGT+ + A
Sbjct: 185 IGACYFGIPQSDLGI--RTDVLDNCLKREGLIMAIRSLSPEVLICDEIGTKGDIEALIMA 242
Query: 317 AQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
GV ++ T HG TI+++ K L L+
Sbjct: 243 FNSGVNIITTIHGFTIEDLYKRRVLSDLL 271
>gi|423082410|ref|ZP_17071002.1| stage III sporulation protein AA [Clostridium difficile
002-P50-2011]
gi|423087822|ref|ZP_17076208.1| stage III sporulation protein AA [Clostridium difficile
050-P50-2011]
gi|357544136|gb|EHJ26142.1| stage III sporulation protein AA [Clostridium difficile
050-P50-2011]
gi|357548736|gb|EHJ30596.1| stage III sporulation protein AA [Clostridium difficile
002-P50-2011]
Length = 322
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 151 IVKHEDLKHAISKVGDFS-----DDNRSGID--RSLHRIS----------AIRNRKMQVI 193
+V ED++ + +S DD + G R HR+ ++N K +
Sbjct: 68 VVTREDVEQTFQIICKYSIHSFMDDIKKGFITLRGGHRVGLVGKAIVEDGQVKNIK-HIS 126
Query: 194 GLTCRVGRAVAG-SAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMK-- 247
L RV R + G S +I+ +++G I L+I PP GKTTLIR+I R L++ +
Sbjct: 127 SLNIRVSREIIGCSDKILSHIIKGKNQINNTLIISPPQCGKTTLIRDIVRNLSNGNEDYG 186
Query: 248 ----RVVIVDTSNEIGGDG-DVPHSGIG-RARRMQVPNVNMQHSVMIEAVENHMPETIII 301
+V +VD NEI G +P +G R ++ ++ ++++ ++ P I+
Sbjct: 187 FKGLKVALVDERNEIAGAYLGIPQMDVGIRTDIIETCPKDLGITMLLRSMS---PNVIVT 243
Query: 302 DEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
DEIG+E E A T G+ L+ T HG +ID+I L L+
Sbjct: 244 DEIGSEKEIKALYTALNGGIGLITTVHGDSIDDIQNRKELNRLL 287
>gi|392955288|ref|ZP_10320831.1| stage III sporulation protein AA [Bacillus macauensis ZFHKF-1]
gi|391878760|gb|EIT87337.1| stage III sporulation protein AA [Bacillus macauensis ZFHKF-1]
Length = 308
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 14/161 (8%)
Query: 195 LTCRVGRAVAGSAE----IICDLVEGGGSILVIGPPGVGKTTLIREIARMLA--DDHMK- 247
RV R V GSAE +CD + L+IG P GKTTL+R++AR+++ D+ +
Sbjct: 116 FNIRVARQVIGSAEPLRAALCDNNRWLNT-LIIGAPQTGKTTLLRDLARLISVGDEQTRI 174
Query: 248 ---RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
+V IVD +EI G +P +G R+ V + + M+ + + PE +I+DE
Sbjct: 175 SSRKVGIVDERSEIAGSVRGIPQFELGS--RVDVLDACPKAEGMMMLIRSMSPEILIVDE 232
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
IG + + A GV L+ TAHG ++ +K P+L+ L
Sbjct: 233 IGRKEDVEAMIEAMHAGVGLIATAHGYSLQEAMKRPALEAL 273
>gi|288553343|ref|YP_003425278.1| stage III sporulation protein AA [Bacillus pseudofirmus OF4]
gi|288544503|gb|ADC48386.1| stage III sporulation protein AA [Bacillus pseudofirmus OF4]
Length = 319
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 9/132 (6%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKR------VVIVDTSNEIGGDG-DVPHSGIGRAR 273
L IGPP GKTT++R++AR++++ KR V I+D +EI VP +G
Sbjct: 147 LFIGPPQTGKTTILRDVARLISEGDEKRGIAPLKVGIIDERSEICASMRGVPQHQLGP-- 204
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R+ V + + M+ + + P+ +I+DEIG + LA GV ++ T HG TID
Sbjct: 205 RIDVLDGCPKAEGMMMMIRSMSPDVLIVDEIGRVEDVLAVQEAVHAGVGVITTVHGHTID 264
Query: 334 NIVKNPSLQILV 345
+++K P+L+ L+
Sbjct: 265 DVLKRPALKELM 276
>gi|167040163|ref|YP_001663148.1| ATPase AAA [Thermoanaerobacter sp. X514]
gi|300914246|ref|ZP_07131562.1| stage III sporulation protein AA [Thermoanaerobacter sp. X561]
gi|307724518|ref|YP_003904269.1| stage III sporulation protein AA [Thermoanaerobacter sp. X513]
gi|166854403|gb|ABY92812.1| AAA ATPase [Thermoanaerobacter sp. X514]
gi|300889181|gb|EFK84327.1| stage III sporulation protein AA [Thermoanaerobacter sp. X561]
gi|307581579|gb|ADN54978.1| stage III sporulation protein AA [Thermoanaerobacter sp. X513]
Length = 332
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 13/160 (8%)
Query: 194 GLTCRVGRAVAGSAEIICDLV----EGGGSILVIGPPGVGKTTLIREIARMLAD--DHM- 246
G R+ + + G AE I + G +IL+I PP GKTTL+R+I R +++ D +
Sbjct: 129 GYNYRISKEIIGVAEEILKYLITPSNGVHNILIISPPQCGKTTLLRDITRWISNGIDFLG 188
Query: 247 ---KRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
K+V +VD +EI G + +P +G R V + + MI + + PE ++ D
Sbjct: 189 FKGKKVGVVDERSEIAGCYNGIPQMDVGL--RTDVLDGCPKAYGMIMLIRSMSPEVVVTD 246
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
EIG + + A + GV+++ T H I++++K P L+
Sbjct: 247 EIGKKEDIEAIHEVLNTGVKIITTVHANDIEDLMKKPVLK 286
>gi|374708800|ref|ZP_09713234.1| stage III sporulation protein AA [Sporolactobacillus inulinus CASD]
Length = 317
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 13/165 (7%)
Query: 219 SILVIGPPGVGKTTLIREIARMLA----DDHM--KRVVIVDTSNEIGGDGD-VPHSGIGR 271
S L+IG P GKTT++R++AR+++ D ++ ++ IVD +E+ G D VP + +G
Sbjct: 144 STLLIGAPQTGKTTMLRDLARLVSEGIPDRYLPSRKTAIVDERSELAGCVDGVPQNRLGV 203
Query: 272 ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331
R V + + M+ + + PE +I+DEIG + A GV ++ +AHG T
Sbjct: 204 --RADVMDACPKAEGMMMMIRSMSPEVLIVDEIGGAEDTKALLEALNAGVAVMASAHGFT 261
Query: 332 IDNIVKNPSLQILVGG--IESVTLGDEE--AKKRKVQKTILERKG 372
D ++ PS++ L+ E + A+K + TIL+R G
Sbjct: 262 FDQLLHRPSIRPLIEAQLFERYVILSRHNSAQKNGCRLTILDRMG 306
>gi|256752877|ref|ZP_05493715.1| stage III sporulation protein AA [Thermoanaerobacter ethanolicus
CCSD1]
gi|256748254|gb|EEU61320.1| stage III sporulation protein AA [Thermoanaerobacter ethanolicus
CCSD1]
Length = 332
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 13/160 (8%)
Query: 194 GLTCRVGRAVAGSAEIICDLV----EGGGSILVIGPPGVGKTTLIREIARMLAD--DHM- 246
G R+ + + G AE I + G +IL+I PP GKTTL+R+I R +++ D +
Sbjct: 129 GYNYRISKEIIGVAEEILKYLITPSNGVHNILIISPPQCGKTTLLRDITRWISNGIDFLG 188
Query: 247 ---KRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
K+V +VD +EI G + +P +G R V + + MI + + PE ++ D
Sbjct: 189 FKGKKVGVVDERSEIAGCYNGIPQMDVGL--RTDVLDGCPKAYGMIMLIRSMSPEVVVTD 246
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
EIG + + A + GV+++ T H I++++K P L+
Sbjct: 247 EIGKKEDIEAIHEVLNTGVKIITTVHANDIEDLMKKPVLK 286
>gi|429762047|ref|ZP_19294454.1| stage III sporulation protein AA [Anaerostipes hadrus DSM 3319]
gi|429182593|gb|EKY23691.1| stage III sporulation protein AA [Anaerostipes hadrus DSM 3319]
Length = 345
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 23/189 (12%)
Query: 194 GLTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMKRVV 250
GL RV V G A+ + G + L+I PPG GKTTL+R++ R ++D+ + V
Sbjct: 161 GLNIRVAHEVKGCADTLYSRCTRMGKLIPTLIISPPGCGKTTLLRDMIRKISDEG-QTVG 219
Query: 251 IVDTSNEIGGDGDVPHSGIGR---ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307
+VD +EIG + G+ + + V + + M + + P+ I +DEIG++
Sbjct: 220 VVDERSEIGA----CYQGVAQNDLGIQTDVMDACEKGQGMNMLIRSMAPDVIAVDEIGSK 275
Query: 308 LEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTI 367
+ A A RG ++ TAHG +++ KNP ++ ++ KK + I
Sbjct: 276 EDVEALFFCAYRGCSILATAHGKNKESLSKNPYMREIIN------------KKMFQRYVI 323
Query: 368 LERKGPPTF 376
LE++ P +
Sbjct: 324 LEQRNQPGY 332
>gi|376261518|ref|YP_005148238.1| stage III sporulation protein AA [Clostridium sp. BNL1100]
gi|373945512|gb|AEY66433.1| stage III sporulation protein AA [Clostridium sp. BNL1100]
Length = 323
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 44/252 (17%)
Query: 121 ELGDLIEVVMDLGRKPLARFPSGDWVISE-----------------QIVKHEDLKHAISK 163
EL +L E+ + G+ + + DW +++ +IVK +L +
Sbjct: 27 ELNNLEEIRLRAGKPLMVFYKKNDWFVTQNGRLTRSLSEAYIVDQKEIVKTLELMSE-NS 85
Query: 164 VGDFSDDNRSGID--RSLHRIS----------AIRNRKMQVIGLTCRVGRAVAGSAE-II 210
+ + D+ +SG R HRI IRN K GL R+ + V GSA+ II
Sbjct: 86 IYAYQDEIKSGYITLRGGHRIGLSGKVVLQEGKIRNIK-DFNGLNIRIAKEVKGSAKHII 144
Query: 211 CDLVEGGGSI---LVIGPPGVGKTTLIREIARMLA------DDHMKRVVIVDTSNEIGGD 261
+++ I L++GPP GKTT++R+++RML+ D + +V IVD +EI
Sbjct: 145 KYIIKNSSDIYNTLIVGPPQCGKTTILRDLSRMLSSGEAEYDFNGMKVGIVDERSEIAAC 204
Query: 262 GD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRG 320
VP S +G R V + + M + + P II DEIGT + A + G
Sbjct: 205 CKGVPQSDVG--YRTDVLDGCPKVLGMEMLLRSMSPGIIITDEIGTHGDRDAILKVLNSG 262
Query: 321 VQLVGTAHGMTI 332
++++ +AHG I
Sbjct: 263 IKIIASAHGYNI 274
>gi|373856780|ref|ZP_09599524.1| stage III sporulation protein AA [Bacillus sp. 1NLA3E]
gi|372453759|gb|EHP27226.1| stage III sporulation protein AA [Bacillus sp. 1NLA3E]
Length = 307
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 28/208 (13%)
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLV--EGGGSILVIGPPGVGKTTLIREIA 238
++ AIRN + R+ + G A+ + + E ++IG P GKTTL+R+IA
Sbjct: 102 QVKAIRN----ISSFNIRIAKEKIGIADSLIPYLYKENWQHTMIIGSPQTGKTTLLRDIA 157
Query: 239 RMLADDHMK------RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAV 291
R+++ ++ +V IVD +EI G +P G R+ V + + M+ +
Sbjct: 158 RIISSGYLPMQLPPFKVGIVDERSEIAGSVNGIPQLSFGP--RIDVLDACPKAEGMMMMI 215
Query: 292 ENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESV 351
+ P+ +++DEIG + +A A G++L+ T HG ++ + + PSLQ ++
Sbjct: 216 RSMSPDVLVVDEIGRKEDAEAIMEAVNAGIKLIMTTHGNSLAEVQRRPSLQYIL------ 269
Query: 352 TLGDEEAKKRKVQKTILERK-GPPTFTC 378
++ +R V+ L RK GP T TC
Sbjct: 270 ---NQGIFERYVE---LSRKNGPGTVTC 291
>gi|386714784|ref|YP_006181107.1| stage III sporulation protein AA [Halobacillus halophilus DSM 2266]
gi|384074340|emb|CCG45833.1| stage III sporulation protein AA [Halobacillus halophilus DSM 2266]
Length = 325
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 10/159 (6%)
Query: 195 LTCRVGRAVAGSA-EIICDLVEGG--GSILVIGPPGVGKTTLIREIARMLADDHM----K 247
+ RV + G ++I L + G S L+IGPP GKTTL+RE+A+ + H
Sbjct: 111 MNIRVAKNTTGQINQLIPYLYQNGRWTSTLIIGPPHSGKTTLLRELAQRIGSGHQDHRAS 170
Query: 248 RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
+V IVD +EI VP +G R V + + M+ + + PE +I+DEIG
Sbjct: 171 KVAIVDERSEIAASLRGVPQLDVGE--RTDVMDACPKAEGMMMMIRSMSPEVLIVDEIGG 228
Query: 307 ELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+A A GV+++ + HG +I N+ K PS + L+
Sbjct: 229 VADANAIREATFTGVEVICSIHGTSITNVQKRPSARELI 267
>gi|75763195|ref|ZP_00742959.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74489310|gb|EAO52762.1| Stage III sporulation protein AA [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 208
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGGD-GDVPHSGIGRAR 273
+VIGPP GKTTL+R++AR ++ +V IVD +EI G +P G
Sbjct: 38 MVIGPPQTGKTTLLRDVARCMSQGVSASEIPSCKVGIVDERSEIAGCVKGIPQYDFGT-- 95
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R+ V + + M+ + + P+ +I+DEIG + ++ A GVQL +AHG + +
Sbjct: 96 RVDVLDACPKAEGMMMMIRSMSPDILIVDEIGRKEDSEAIMEAVHAGVQLFISAHGFSYE 155
Query: 334 NIVKNPSLQILV 345
++V+ PSL+ ++
Sbjct: 156 DVVRRPSLKAVL 167
>gi|255100207|ref|ZP_05329184.1| stage III sporulation protein AA [Clostridium difficile QCD-63q42]
Length = 322
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 151 IVKHEDLKHAISKVGDFS-----DDNRSGID--RSLHRIS----------AIRNRKMQVI 193
+V ED++ + +S DD + G R HR+ ++N K +
Sbjct: 68 VVTREDVEQTFQIICKYSIHSFMDDIKKGFITLRGGHRVGLVGKAIVEDGQVKNIK-HIS 126
Query: 194 GLTCRVGRAVAG-SAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMK-- 247
L RV R + G S +I+ +++G I L+I PP GKTTLIR+I R L++ +
Sbjct: 127 SLNIRVSREIIGCSDKILSHIIKGKNQINNTLIISPPQCGKTTLIRDIVRNLSNGNEDYG 186
Query: 248 ----RVVIVDTSNEIGGDG-DVPHSGIG-RARRMQVPNVNMQHSVMIEAVENHMPETIII 301
+V +VD NEI G VP +G R ++ ++ ++++ ++ P I+
Sbjct: 187 FKGLKVALVDERNEIAGSYLGVPQMDVGIRTDIIETCPKDLGITMLLRSMS---PNVIVT 243
Query: 302 DEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
DEIG+E E A T G+ L+ T HG +I++I L L+
Sbjct: 244 DEIGSEKEIKALYTALNGGIGLITTVHGDSIEDIQNRKELNRLL 287
>gi|160893216|ref|ZP_02074004.1| hypothetical protein CLOL250_00762 [Clostridium sp. L2-50]
gi|156865299|gb|EDO58730.1| stage III sporulation protein AA [Clostridium sp. L2-50]
Length = 337
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 18/180 (10%)
Query: 173 SGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI--LVIGPPGVGK 230
SG+ +S+ IS I R + C+ +++ ++ G + L+I PP GK
Sbjct: 116 SGMIKSVRHISFINIRLSHQVKGCCK---------KVLPYIINGNETFHTLIISPPRCGK 166
Query: 231 TTLIREIARMLADDH----MKRVVIVDTSNEIGG-DGDVPHSGIGRARRMQVPNVNMQHS 285
TTL+R++ RML+D + +VD +EIG VP + IG R + + +
Sbjct: 167 TTLLRDMIRMLSDGFPGFKGNTIGVVDERSEIGACYKGVPQNDIGI--RTDILDCCPKSY 224
Query: 286 VMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
M+ + + P+ I +DEIG+ + A ++ G +L+ T HG +ID+I P L+ LV
Sbjct: 225 GMLMLIRSMSPQIIAVDEIGSRDDIDAIYSVINCGCKLIATVHGNSIDDIRNRPGLRKLV 284
>gi|433444521|ref|ZP_20409393.1| stage III sporulation protein AA [Anoxybacillus flavithermus
TNO-09.006]
gi|432001549|gb|ELK22424.1| stage III sporulation protein AA [Anoxybacillus flavithermus
TNO-09.006]
Length = 307
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 91/171 (53%), Gaps = 15/171 (8%)
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG--GSILVIGPPGVGKTTLIREIA 238
++ AIR+ + R+ R G AE + + G + ++IG P GKTTL+R+IA
Sbjct: 102 KVKAIRH----ITSFNIRMARQQIGIAEPLLPYLYDGRWMNTIIIGAPQTGKTTLLRDIA 157
Query: 239 RMLA----DDHM--KRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAV 291
R+++ + H+ ++V IVD +EI G +P G R+ V + + M+ +
Sbjct: 158 RIVSGGVTEQHIAPRKVGIVDERSEIAGCVKGIPQFTFGC--RVDVLDACPKAEGMMMMI 215
Query: 292 ENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
+ P+ +++DEIG+E + A GV L TAHG +D+++K PSL+
Sbjct: 216 RSMSPDVLVVDEIGSEADCTAILEAVHAGVGLFMTAHGRHLDDLMKRPSLR 266
>gi|297544559|ref|YP_003676861.1| stage III sporulation protein AA [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842334|gb|ADH60850.1| stage III sporulation protein AA [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 332
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 13/160 (8%)
Query: 194 GLTCRVGRAVAGSAEIICDLV----EGGGSILVIGPPGVGKTTLIREIARMLAD--DHM- 246
G R+ + + G AE I + G +IL+I PP GKTTL+R+IAR +++ D +
Sbjct: 129 GYNYRISKDIIGVAEEILKYLISTSNGVYNILIISPPQCGKTTLLRDIARWISNGIDFLG 188
Query: 247 ---KRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
K+V IVD +EI G + +P +G R V + + MI + + P+ ++ D
Sbjct: 189 FTGKKVGIVDERSEIAGCYNGIPQLDVGI--RTDVLDGCPKAHGMIMLIRSMSPQVVVTD 246
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
EIG + + A + GV+++ T H I++++K P L+
Sbjct: 247 EIGRKEDIEAIHEVLNTGVKIITTVHANDIEDLMKKPILK 286
>gi|219854458|ref|YP_002471580.1| hypothetical protein CKR_1115 [Clostridium kluyveri NBRC 12016]
gi|219568182|dbj|BAH06166.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 308
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 51/268 (19%)
Query: 118 MHRELGDLIE--------------VVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK 163
+ R LGDLI+ ++M LGRK V+ + I K EDLK + +
Sbjct: 17 LKRALGDLIKSPDLQEIRIRTNKPLIMQLGRKE---------VVVQYIPKLEDLKVIVQR 67
Query: 164 VGDFS-----DDNRSGID--RSLHRI-----SAIRNRKMQVI----GLTCRVGRAVAGSA 207
+ ++S ++ + G R HR+ I +++ I + R+ R + G +
Sbjct: 68 MSNYSIYAFEEEIKQGYITIRGGHRVGICGRCIIEKNEVKTIKDIASINIRICREIIGCS 127
Query: 208 EIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLADD------HMKRVVIVDTSNEI 258
+ I + ++ +I PP GKTTLIR+I R ++ K+V ++D +EI
Sbjct: 128 DSIMKFILKKDKVINTIIISPPKCGKTTLIRDIVRNISQGIKNVGLTGKKVCVIDERSEI 187
Query: 259 GGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIA 317
G + +P +G R + + + +I A+ + PE I+ DEIGT + + T
Sbjct: 188 GACFNGMPQLNVGM--RTDILDGCPKSQGIIMAIRSMSPEVIVCDEIGTYKDMDSILTAL 245
Query: 318 QRGVQLVGTAHGMTIDNIVKNPSLQILV 345
GV L+ T HG +++ P + +V
Sbjct: 246 NSGVNLITTIHGYGTEDLYSRPVFKEIV 273
>gi|153953843|ref|YP_001394608.1| stage III sporulation protein AA [Clostridium kluyveri DSM 555]
gi|146346724|gb|EDK33260.1| Predicted stage III sporulation protein AA [Clostridium kluyveri
DSM 555]
Length = 305
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 51/268 (19%)
Query: 118 MHRELGDLIE--------------VVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK 163
+ R LGDLI+ ++M LGRK V+ + I K EDLK + +
Sbjct: 14 LKRALGDLIKSPDLQEIRIRTNKPLIMQLGRKE---------VVVQYIPKLEDLKVIVQR 64
Query: 164 VGDFS-----DDNRSGID--RSLHRI-----SAIRNRKMQVI----GLTCRVGRAVAGSA 207
+ ++S ++ + G R HR+ I +++ I + R+ R + G +
Sbjct: 65 MSNYSIYAFEEEIKQGYITIRGGHRVGICGRCIIEKNEVKTIKDIASINIRICREIIGCS 124
Query: 208 EIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLADD------HMKRVVIVDTSNEI 258
+ I + ++ +I PP GKTTLIR+I R ++ K+V ++D +EI
Sbjct: 125 DSIMKFILKKDKVINTIIISPPKCGKTTLIRDIVRNISQGIKNVGLTGKKVCVIDERSEI 184
Query: 259 GGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIA 317
G + +P +G R + + + +I A+ + PE I+ DEIGT + + T
Sbjct: 185 GACFNGMPQLNVGM--RTDILDGCPKSQGIIMAIRSMSPEVIVCDEIGTYKDMDSILTAL 242
Query: 318 QRGVQLVGTAHGMTIDNIVKNPSLQILV 345
GV L+ T HG +++ P + +V
Sbjct: 243 NSGVNLITTIHGYGTEDLYSRPVFKEIV 270
>gi|126698788|ref|YP_001087685.1| stage III sporulation protein AA [Clostridium difficile 630]
gi|255306096|ref|ZP_05350268.1| stage III sporulation protein AA [Clostridium difficile ATCC 43255]
gi|423090770|ref|ZP_17079056.1| stage III sporulation protein AA [Clostridium difficile
70-100-2010]
gi|115250225|emb|CAJ68046.1| Stage III sporulation protein AA [Clostridium difficile 630]
gi|357555885|gb|EHJ37507.1| stage III sporulation protein AA [Clostridium difficile
70-100-2010]
Length = 322
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 151 IVKHEDLKHAISKVGDFS-----DDNRSGID--RSLHRIS----------AIRNRKMQVI 193
+V ED++ + +S DD + G R HR+ ++N K +
Sbjct: 68 VVTREDVEQTFQIICKYSIHSFMDDIKKGFITLRGGHRVGLVGKAIVEDGQVKNIK-HIS 126
Query: 194 GLTCRVGRAVAG-SAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMK-- 247
L RV R + G S +I+ +++G I L+I PP GKTTLIR+I R L++ +
Sbjct: 127 SLNIRVSREIIGCSDKILSHIIKGKNQINNTLIISPPQCGKTTLIRDIVRNLSNGNEDYG 186
Query: 248 ----RVVIVDTSNEIGGDG-DVPHSGIG-RARRMQVPNVNMQHSVMIEAVENHMPETIII 301
+V +VD NEI G VP +G R ++ ++ ++++ ++ P I+
Sbjct: 187 FKGLKVALVDERNEIAGAYLGVPQMDVGIRTDIIETCPKDLGITMLLRSMS---PNVIVT 243
Query: 302 DEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
DEIG+E E A T G+ L+ T HG +I++I L L+
Sbjct: 244 DEIGSEKEIKALYTALNGGIGLITTVHGDSIEDIQNRKELNRLL 287
>gi|212638773|ref|YP_002315293.1| stage III sporulation protein AA [Anoxybacillus flavithermus WK1]
gi|212560253|gb|ACJ33308.1| Stage III sporulation protein AA (mutants block sporulation after
engulfment) [Anoxybacillus flavithermus WK1]
Length = 313
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 76/132 (57%), Gaps = 9/132 (6%)
Query: 221 LVIGPPGVGKTTLIREIARMLA----DDHM--KRVVIVDTSNEIGGD-GDVPHSGIGRAR 273
++IG P GKTTL+R+IAR+++ + H+ ++V IVD +EI G +P G
Sbjct: 146 VIIGAPQTGKTTLLRDIARIVSSGVTEQHIAPRKVGIVDERSEIAGCVKGIPQFTFGC-- 203
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R+ V + + M+ + + P+ +I+DEIG+E + A G+ L TAHG +D
Sbjct: 204 RVDVLDACPKAEGMMMMIRSMSPDVLIVDEIGSEADCTAILEAVHAGIGLFMTAHGRHLD 263
Query: 334 NIVKNPSLQILV 345
+++K PSL+ ++
Sbjct: 264 DLMKRPSLRPII 275
>gi|289578279|ref|YP_003476906.1| stage III sporulation protein AA [Thermoanaerobacter italicus Ab9]
gi|289527992|gb|ADD02344.1| stage III sporulation protein AA [Thermoanaerobacter italicus Ab9]
Length = 332
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 13/160 (8%)
Query: 194 GLTCRVGRAVAGSAEIICDLV----EGGGSILVIGPPGVGKTTLIREIARMLAD--DHM- 246
G R+ + + G AE I + G +IL+I PP GKTTL+R+IAR +++ D +
Sbjct: 129 GYNYRISKDIIGVAEEILKYLISTSNGVHNILIISPPQCGKTTLLRDIARWISNGIDFLG 188
Query: 247 ---KRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
K+V IVD +EI G + +P +G R V + + MI + + P+ ++ D
Sbjct: 189 FTGKKVGIVDERSEIAGCYNGIPQLDVGI--RTDVLDGCPKAHGMIMLIRSMSPQVVVTD 246
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
EIG + + A + GV+++ T H I++++K P L+
Sbjct: 247 EIGRKEDIEAIHEVLNTGVKIITTVHANDIEDLMKKPILK 286
>gi|452975004|gb|EME74823.1| stage III sporulation protein AA [Bacillus sonorensis L12]
Length = 307
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDH----MKRVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++ R+++ K+ IVD +EI G +P G R+
Sbjct: 140 LIIGPPQTGKTTLLRDLGRLISTGSGKIPAKKAAIVDERSEIAGCVNGIPQYKFGN--RI 197
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
+ + + ++ + + PE +I DEIG +A A GV ++ +AHG T ++
Sbjct: 198 DILDACPKAEGLMMMIRSMSPEVVIADEIGRMEDAEALLEAVHAGVSVIVSAHGFTYSDV 257
Query: 336 VKNPSLQIL 344
K PSL++L
Sbjct: 258 SKRPSLKLL 266
>gi|403380881|ref|ZP_10922938.1| stage III sporulation protein AA [Paenibacillus sp. JC66]
Length = 326
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 13/158 (8%)
Query: 198 RVGRAVAGSAEIICDLVEG--GGSILVIGPPGVGKTTLIREIARMLADDHM--------K 247
R+ R G A + L+ GGSIL++ PP GKTT++R++AR ++ + +
Sbjct: 128 RIARERTGCASQLLPLLSDARGGSILLVSPPQHGKTTMLRDLARSISGGYTCGQIRVPGR 187
Query: 248 RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
+V I+D +EI VP +G R V + + M+ + + PE +I+DE+G
Sbjct: 188 KVGIIDERSEIAACVKGVPTFDVGP--RTDVLDHCPKAEGMMMMIRSMSPEVLIVDELGR 245
Query: 307 ELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
+ +A A G+Q++ TAH ++ +I K P L+ L
Sbjct: 246 DEDAAAVHEAIHAGIQVLATAHAASLGDIEKRPGLRTL 283
>gi|23099349|ref|NP_692815.1| stage III sporulation protein AA [Oceanobacillus iheyensis HTE831]
gi|22777578|dbj|BAC13850.1| stage III sporulation protein AA (mutants block sporulation after
engulfment) [Oceanobacillus iheyensis HTE831]
Length = 327
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 8/131 (6%)
Query: 221 LVIGPPGVGKTTLIREIARMLAD-----DHMKRVVIVDTSNEIGGD-GDVPHSGIGRARR 274
+VIGPP GKTT+IR++ RM+A + K+V IVD +EI +P +G R
Sbjct: 142 MVIGPPQSGKTTIIRDLTRMIATIDQPMNRSKKVGIVDERSEIAASLQGIPQHDVGT--R 199
Query: 275 MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDN 334
+ + + M+ V + P+ I++DEIGT+ + A GV ++ TAH D+
Sbjct: 200 TDIMDACPKAEGMMMLVRSMSPDIIVVDEIGTDHDVEALLEAIHTGVTIICTAHANQWDD 259
Query: 335 IVKNPSLQILV 345
+ K PS++ L+
Sbjct: 260 LNKRPSMKRLI 270
>gi|168186187|ref|ZP_02620822.1| stage III sporulation protein AA [Clostridium botulinum C str.
Eklund]
gi|169295742|gb|EDS77875.1| stage III sporulation protein AA [Clostridium botulinum C str.
Eklund]
Length = 298
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 195 LTCRVGRAVAGSAEIICDLV---EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVI 251
L R+ R V G + I + E + ++I PP GKTTLIR+I+R L+ K++ I
Sbjct: 112 LNIRICREVIGCSNKIMPYILKRENVFNTIIISPPKCGKTTLIRDISRNLSIAK-KKICI 170
Query: 252 VDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEA 310
+D +EI + VP +G R + + ++ +I A+ + PE I+ DEIGT +
Sbjct: 171 IDERSEIASCFEGVPQMDVGI--RTDILDNCVKSQGIIMAIRSMAPEVIVCDEIGTHRDV 228
Query: 311 LAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
+ GV L+ T HG I+++ + P
Sbjct: 229 ESIIMAMNSGVNLITTIHGFGIEDLYRRPVFN 260
>gi|225018840|ref|ZP_03708032.1| hypothetical protein CLOSTMETH_02790 [Clostridium methylpentosum
DSM 5476]
gi|224948400|gb|EEG29609.1| hypothetical protein CLOSTMETH_02790 [Clostridium methylpentosum
DSM 5476]
Length = 295
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 10/160 (6%)
Query: 198 RVGRAVAGSA-EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN 256
R+ R + GSA E+I L G L++G P GKTTL+++I R + D ++ +VD+
Sbjct: 121 RIARQIKGSANELIRRLNGKMGGTLLVGAPASGKTTLLKDIVRQMPD---HKITVVDSRG 177
Query: 257 EIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST 315
E+ VP + +G A V + + M+ A+ + P+ I+ DEIG +A A
Sbjct: 178 ELAACVCGVPQNDVGNA---DVLDGWQKAEGMMLAIRSMAPDIIVCDEIGDRRDAQAVEC 234
Query: 316 IAQRGVQLVGTAHGMTIDNIVKNPSLQ--ILVGGIESVTL 353
GV+L+ TAH +++ + K + + +G E++ L
Sbjct: 235 CMNAGVKLIATAHAGSLEELTKRRHIMDILSLGAFENIVL 274
>gi|350266640|ref|YP_004877947.1| stage III sporulation protein AA [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|349599527|gb|AEP87315.1| stage III sporulation protein AA [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 307
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 32/199 (16%)
Query: 192 VIGLTCRVGRAVAGSAEIICDLV--EGGGSILVIGPPGVGKTTLIREIARM--LADDHMK 247
+ R+ R G AE + + E + L+IGPP GKTTL+R++AR+ +HM
Sbjct: 109 ITSFNIRIARQKLGIAEPLLPFLYRESWLNTLIIGPPQTGKTTLLRDLARLSSTGKNHML 168
Query: 248 --RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
+ IVD +EI G +P G+ R+ V + + ++ + + PE II+DEI
Sbjct: 169 PVKTGIVDERSEIAGCLRGIPQHQFGQ--RIDVLDACPKAEGLMMMIRSMSPEVIIVDEI 226
Query: 305 G------TELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358
G LEAL A GV ++ +AHG ++ +++K PSL+ L +E A
Sbjct: 227 GRIEDTDALLEALHA------GVSVIVSAHGWSLSDLMKRPSLK---------RLWEERA 271
Query: 359 KKRKVQKTILERKGPPTFT 377
+R ++ + KGP T +
Sbjct: 272 FERYLELS--RAKGPGTVS 288
>gi|326201942|ref|ZP_08191812.1| stage III sporulation protein AA [Clostridium papyrosolvens DSM
2782]
gi|325987737|gb|EGD48563.1| stage III sporulation protein AA [Clostridium papyrosolvens DSM
2782]
Length = 323
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 127/279 (45%), Gaps = 49/279 (17%)
Query: 97 ADIELELFLELLPSRMRRELCMH---RELGDLIEVVMDLGRKPLARFPSGDWVIS----- 148
+++ E+F L+P RE+ EL +L E+ + G+ + + DW ++
Sbjct: 2 TNVQFEIFPFLIPGI--REVIQKININELNNLEEIRLRAGKPLMVFYKKNDWFVTGNGRL 59
Query: 149 ------------EQIVKHEDLKHAISKVGDFSDDNRSGID--RSLHRIS----------A 184
+I+K +L + + + D+ +SG R HRI
Sbjct: 60 TRSLSEAYLVEQREIIKTLELMSE-NSIYAYQDEIKSGYITLRGGHRIGLSGKVVLQEGK 118
Query: 185 IRNRKMQVIGLTCRVGRAVAGSAE-IICDLVEGGGSI---LVIGPPGVGKTTLIREIARM 240
IRN K GL R+ + V G A+ II +++ I L++GPP GKTT++R+++RM
Sbjct: 119 IRNIK-DFNGLNIRIAKEVRGCAKNIIKYIIKNSSDIYNTLIVGPPQCGKTTILRDLSRM 177
Query: 241 LA------DDHMKRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293
L+ D + +V IVD +EI VP + +G R V + + M + +
Sbjct: 178 LSSGEQEYDFNGMKVGIVDERSEIAACCKGVPQNDVG--YRTDVMDGCPKVLGMEMLLRS 235
Query: 294 HMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTI 332
P II DEIGT + A + G++++ +AHG I
Sbjct: 236 MSPGIIITDEIGTHGDRDAVLKVLNSGIKIIASAHGYNI 274
>gi|386723401|ref|YP_006189727.1| stage III sporulation protein AA [Paenibacillus mucilaginosus K02]
gi|384090526|gb|AFH61962.1| stage III sporulation protein AA [Paenibacillus mucilaginosus K02]
Length = 334
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 12/138 (8%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK--------RVVIVDTSNEIGGD-GDVPHSGIGR 271
LVI PP +GKTTL+R++AR+L+ + +V IVD +EI VP +G
Sbjct: 156 LVISPPQLGKTTLVRDLARLLSSGSAEAGIGGRSFKVGIVDERSEIAACVRGVPRFDVGP 215
Query: 272 ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331
R V + + M+ + + PE +I DEIG +A A G+ L+ TAHG
Sbjct: 216 --RTDVLDGCPKAEGMMMMIRSMSPEVLIADEIGRSEDAAAIHEALHAGIGLIATAHGRD 273
Query: 332 IDNIVKNPSL-QILVGGI 348
+D++ + P L ++L GG+
Sbjct: 274 VDDVRRRPILKELLAGGV 291
>gi|293115588|ref|ZP_05792179.2| stage III sporulation protein AA [Butyrivibrio crossotus DSM 2876]
gi|292808949|gb|EFF68154.1| stage III sporulation protein AA [Butyrivibrio crossotus DSM 2876]
Length = 303
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 111/251 (44%), Gaps = 34/251 (13%)
Query: 105 LELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
+ LP ++ + H + + E+ + + R +F I + IV +K + K+
Sbjct: 17 INYLPKDIKNVIETHSDKDKITEIRLRINRPLEVKFRCSCCFIDKIIVTKTTIKEIMDKI 76
Query: 165 GDFS-----DD-----------NRSGIDRSL----HRISAIRNRKMQVIGLTCRVGRAVA 204
++S DD NR GI ++ ++N + L RV +
Sbjct: 77 CNYSLYAYEDDIKRGFITVKGGNRVGICGKAVIENGHVTTLKN----ISSLNIRVANEIK 132
Query: 205 GSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMKR---VVIVDTSNEI 258
G E + SI +++ PPG GKTTL+R+I R+L+D + R + ++D NEI
Sbjct: 133 GCGEQYIKYITDNNSICNTIIVSPPGCGKTTLLRDIIRLLSDGYGNRGFNISVIDERNEI 192
Query: 259 GG-DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIA 317
D +P + +G + + N + +I A+ + PE I +DEIG++ + +
Sbjct: 193 SATDLGIPENDVGMRTDVMINN---KTEGIIMALRSMAPEIIAVDEIGSDKDINVLNKAI 249
Query: 318 QRGVQLVGTAH 328
G +++ + H
Sbjct: 250 TCGCKILASIH 260
>gi|337746932|ref|YP_004641094.1| stage III sporulation protein AA [Paenibacillus mucilaginosus
KNP414]
gi|336298121|gb|AEI41224.1| Stage III sporulation protein AA [Paenibacillus mucilaginosus
KNP414]
Length = 334
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 12/138 (8%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK--------RVVIVDTSNEIGGD-GDVPHSGIGR 271
LVI PP +GKTTL+R++AR+L+ + +V IVD +EI VP +G
Sbjct: 156 LVISPPQLGKTTLVRDLARLLSSGSAEAGIGGRSFKVGIVDERSEIAACVRGVPRFDVGP 215
Query: 272 ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331
R V + + M+ + + PE +I DEIG +A A G+ L+ TAHG
Sbjct: 216 --RTDVLDGCPKAEGMMMMIRSMSPEVLIADEIGRSEDAAAIHEALHAGIGLIATAHGRD 273
Query: 332 IDNIVKNPSL-QILVGGI 348
+D++ + P L ++L GG+
Sbjct: 274 VDDVRRRPILKELLAGGV 291
>gi|297616604|ref|YP_003701763.1| stage III sporulation protein AA [Syntrophothermus lipocalidus DSM
12680]
gi|297144441|gb|ADI01198.1| stage III sporulation protein AA [Syntrophothermus lipocalidus DSM
12680]
Length = 326
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 8/158 (5%)
Query: 194 GLTCRVGRAVAGSAE-IICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLADDHMK-R 248
GL RV R + G AE I L+ G IL ++ PP GKTTL+R++ R+ +D
Sbjct: 131 GLAFRVAREMVGCAEPIASRLIVTGRRILNTLIVSPPRCGKTTLLRDLTRLYSDGPANLN 190
Query: 249 VVIVDTSNEIGG-DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307
VV++D +EI +P +G R V + + M+ AV + P +++DEIG
Sbjct: 191 VVVIDERSEIAACYQGIPQLNVGN--RTDVLDGCPKALGMMMAVRSLSPHLVVVDEIGRP 248
Query: 308 LEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+A A GV ++ TAHG +++I + P + L+
Sbjct: 249 ADAEALQECVNAGVSVIATAHGTDLEDISRRPIMAGLL 286
>gi|379720795|ref|YP_005312926.1| Stage III sporulation protein AA [Paenibacillus mucilaginosus 3016]
gi|378569467|gb|AFC29777.1| Stage III sporulation protein AA [Paenibacillus mucilaginosus 3016]
Length = 342
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 12/138 (8%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK--------RVVIVDTSNEIGGD-GDVPHSGIGR 271
LVI PP +GKTTL+R++AR+L+ + +V IVD +EI VP +G
Sbjct: 164 LVISPPQLGKTTLVRDLARLLSSGSAEAGIGGRSFKVGIVDERSEIAACVRGVPRFDVGP 223
Query: 272 ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331
R V + + M+ + + PE +I DEIG +A A G+ L+ TAHG
Sbjct: 224 --RTDVLDGCPKAEGMMMMIRSMSPEVLIADEIGRSEDAAAIHEALHAGIGLIATAHGRD 281
Query: 332 IDNIVKNPSL-QILVGGI 348
+D++ + P L ++L GG+
Sbjct: 282 VDDVRRRPILKELLAGGV 299
>gi|302874798|ref|YP_003843431.1| stage III sporulation protein AA [Clostridium cellulovorans 743B]
gi|307690585|ref|ZP_07633031.1| stage III sporulation protein AA [Clostridium cellulovorans 743B]
gi|302577655|gb|ADL51667.1| stage III sporulation protein AA [Clostridium cellulovorans 743B]
Length = 307
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 114/227 (50%), Gaps = 28/227 (12%)
Query: 135 KPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS-----DDNRSGID--RSLHRI----- 182
KP+ + + I ++IV ++L+ + K+ FS D+ R G + HR+
Sbjct: 35 KPVIAYTTTGEKIGKEIVTKDELEIIVRKISKFSIYAFEDEIRQGFLTLKEGHRVGICGE 94
Query: 183 SAIRNRKMQVI----GLTCRVGRAVAGSAEIICDLV---EGGGSILVIGPPGVGKTTLIR 235
I N ++++I L R+ R + G + + + + +G + ++I PP GKTT++R
Sbjct: 95 CVIENGEIKIIKNIASLNIRMAREIYGCSNSVIEYILRDQGIYNTIIISPPKCGKTTMLR 154
Query: 236 EIARML----ADDHM--KRVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMI 288
+I R L AD+++ +RV ++D +EI VP +G R V + + ++
Sbjct: 155 DITRQLSDGIADNNVSGRRVCVIDERSEIAACKLGVPEMDVGL--RTDVLDGCPKAIGIM 212
Query: 289 EAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
A+ P+ I+ DEIGTE + + + GV ++ T HG +I+++
Sbjct: 213 MAIRTLAPDIIVCDEIGTEKDLNSIISACTCGVNIISTIHGQSIEDL 259
>gi|167037501|ref|YP_001665079.1| ATPase AAA [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|320115915|ref|YP_004186074.1| stage III sporulation protein AA [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166856335|gb|ABY94743.1| AAA ATPase [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319929006|gb|ADV79691.1| stage III sporulation protein AA [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 332
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 13/160 (8%)
Query: 194 GLTCRVGRAVAGSAEIICDLV----EGGGSILVIGPPGVGKTTLIREIARMLAD--DHM- 246
G R+ + + G AE I + + +IL+I PP GKTTL+R+I R +++ D +
Sbjct: 129 GYNYRISKEIIGVAEEILKYLITPSKDVYNILIISPPQCGKTTLLRDITRWISNGIDFLG 188
Query: 247 ---KRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
K+V +VD +EI G + +P +G R V + + MI + + PE ++ D
Sbjct: 189 FKGKKVGVVDERSEIAGCYNGIPQMDVGI--RTDVLDGCPKAYGMIMLIRSMSPEVVVTD 246
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
EIG + + A + GV+++ T H I++++K P L+
Sbjct: 247 EIGKKEDIEAIHEVLNTGVKIITTVHANDIEDLMKKPVLK 286
>gi|407979685|ref|ZP_11160495.1| stage III sporulation protein AA [Bacillus sp. HYC-10]
gi|407413697|gb|EKF35386.1| stage III sporulation protein AA [Bacillus sp. HYC-10]
Length = 303
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHM----KRVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++AR+++ ++ IVD +EI G VP G R+
Sbjct: 136 LIIGPPQTGKTTLLRDLARLVSTGTTTISPRKTGIVDERSEIAGCIRGVPQHSFGH--RI 193
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + ++ + + PE II+DEIG + A GV ++ +AHG +++++
Sbjct: 194 DVLDACPKAEGLMMMIRSMSPEVIIVDEIGKSEDVQALLEAIHAGVTIIVSAHGYSLEDL 253
Query: 336 VKNPSLQIL 344
K PS + L
Sbjct: 254 YKRPSFEPL 262
>gi|403070093|ref|ZP_10911425.1| stage III sporulation protein AA [Oceanobacillus sp. Ndiop]
Length = 325
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L++GPP GKTTLIR++ R++A + K +V ++D +EIG VP +G R
Sbjct: 141 LIVGPPQTGKTTLIRDLTRLIASGYGKISPRKVGVIDERSEIGASLKGVPQHNLGL--RT 198
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + M+ + + P+ +++DEIG+ + A GV +V + HG + +
Sbjct: 199 DVLDACPKSDGMMMMIRSMSPDVLVVDEIGSGEDIAALMEAINAGVTIVCSIHGNDLKEL 258
Query: 336 VKNPSLQIL 344
K PSLQ L
Sbjct: 259 KKRPSLQQL 267
>gi|291544826|emb|CBL17935.1| Uncharacterized protein conserved in bacteria [Ruminococcus
champanellensis 18P13]
Length = 295
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 29/165 (17%)
Query: 195 LTCRVGRAVAGSAEIICD--LVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252
L R+ + V G + + + +G S+L++GPP GKTT++R++ R+L + RV +V
Sbjct: 120 LNIRIAKQVLGCGQALYEKLFAQGRQSVLLLGPPASGKTTMLRDLCRLLGSRY--RVSVV 177
Query: 253 DTSNEI------------GGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETII 300
D E+ G DV G +A+ MQ+ A+ P+ II
Sbjct: 178 DERGELAACRQGIPTHDLGAMTDV-FDGYPKAQGMQI------------ALRVMTPDYII 224
Query: 301 IDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
DE+G+E E A GV ++GTAH ++ + P L+ L+
Sbjct: 225 CDELGSEAETTAVLASMNSGVSILGTAHAGSLAQAERRPQLRCLL 269
>gi|194016755|ref|ZP_03055368.1| stage III sporulation protein AA [Bacillus pumilus ATCC 7061]
gi|194011361|gb|EDW20930.1| stage III sporulation protein AA [Bacillus pumilus ATCC 7061]
Length = 307
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHM----KRVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R+IAR+ + K+ I+D +EI G VP G R+
Sbjct: 140 LIIGPPQTGKTTLLRDIARLASTGTKAIPPKKTGIIDERSEIAGCIRGVPQHQFGH--RV 197
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + ++ + + PE +I+DEIG + A GV ++ + HG +++N+
Sbjct: 198 DVLDACPKAEGLMMMIRSMSPEVMIVDEIGKSEDVQALLEAIHAGVTIIVSVHGYSLENV 257
Query: 336 VKNPSLQIL 344
K PSL+ L
Sbjct: 258 YKRPSLKPL 266
>gi|52080976|ref|YP_079767.1| hypothetical protein BL01540 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319645066|ref|ZP_07999299.1| SpoIIIAA protein [Bacillus sp. BT1B_CT2]
gi|423682948|ref|ZP_17657787.1| hypothetical protein MUY_02800 [Bacillus licheniformis WX-02]
gi|52004187|gb|AAU24129.1| SpoIIIAA [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317392875|gb|EFV73669.1| SpoIIIAA protein [Bacillus sp. BT1B_CT2]
gi|383439722|gb|EID47497.1| hypothetical protein MUY_02800 [Bacillus licheniformis WX-02]
Length = 307
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDH----MKRVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++AR+++ K+V IVD +EI G +P +G R
Sbjct: 140 LIIGPPQTGKTTLLRDLARLISSGSGNAPAKKVGIVDERSEIAGCVNGIPQYRLGD--RA 197
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
+ + + ++ + + PE +I DEIG +A A GV ++ +AHG T ++
Sbjct: 198 DILDACPKAEGLMMMIRSMSPEVMIADEIGRMEDAEALLEAVHAGVTVIVSAHGYTYADL 257
Query: 336 VKNPSLQIL 344
+ PSL++L
Sbjct: 258 ARRPSLKML 266
>gi|403386589|ref|ZP_10928646.1| stage III sporulation protein AA [Clostridium sp. JC122]
Length = 251
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 16/173 (9%)
Query: 180 HRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSIL---VIGPPGVGKTTLIRE 236
+++ I+N ++ + RV + + ++ I + G IL +I PP GKTT++R+
Sbjct: 44 NKVKTIKN----IVSINIRVAKEIINCSKTIIPYILQEGEILNTIIISPPKCGKTTILRD 99
Query: 237 IARMLADDHM------KRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIE 289
I R++++ + K V ++D +EI +P IG R V + + +I
Sbjct: 100 ICRIVSNGNYTLNLKGKNVSVIDERSEIAACFKGIPQMNIGE--RTDVLDSCPKSEGIIM 157
Query: 290 AVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
A+ + PE +I DEIGT + + GV+L+ T HG ID++ K P +
Sbjct: 158 AIRSMSPEVVICDEIGTYKDMDSIIAALNSGVKLITTIHGFDIDDLYKRPVFR 210
>gi|404489858|ref|YP_006713964.1| stage III sporulation protein SpoIIIAA [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|52348854|gb|AAU41488.1| stage III sporulation protein SpoIIIAA [Bacillus licheniformis DSM
13 = ATCC 14580]
Length = 309
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDH----MKRVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++AR+++ K+V IVD +EI G +P +G R
Sbjct: 142 LIIGPPQTGKTTLLRDLARLISSGSGNAPAKKVGIVDERSEIAGCVNGIPQYRLGD--RA 199
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
+ + + ++ + + PE +I DEIG +A A GV ++ +AHG T ++
Sbjct: 200 DILDACPKAEGLMMMIRSMSPEVMIADEIGRMEDAEALLEAVHAGVTVIVSAHGYTYADL 259
Query: 336 VKNPSLQIL 344
+ PSL++L
Sbjct: 260 ARRPSLKML 268
>gi|89099238|ref|ZP_01172116.1| stage III sporulation protein AA [Bacillus sp. NRRL B-14911]
gi|89086084|gb|EAR65207.1| stage III sporulation protein AA [Bacillus sp. NRRL B-14911]
Length = 356
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 16/178 (8%)
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI--LVIGPPGVGKTTLIREIA 238
++ AIR+ + RV R G+A+ + + G + +V+GPP GKTTL+R+IA
Sbjct: 149 KVKAIRD----ISSFNIRVAREKIGTADRLIPYLYSSGWLHTMVVGPPQTGKTTLLRDIA 204
Query: 239 RMLADDHM------KRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAV 291
R+++ ++ IVD +EI G +P G R+ V + + M+ +
Sbjct: 205 RIVSSGAANPAIAAQKAGIVDERSEIAGSVSGIPQMTFGP--RVDVLDACPKAEGMMMMI 262
Query: 292 ENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSL-QILVGGI 348
+ P+ +++DEIG + + A G++L+ T HG + + I P+L QIL GI
Sbjct: 263 RSMSPDVLLVDEIGRQEDGEAIMEAVHAGIKLMMTTHGRSWEEIKNRPTLKQILESGI 320
>gi|421874483|ref|ZP_16306087.1| stage III sporulation protein AA [Brevibacillus laterosporus GI-9]
gi|372456527|emb|CCF15636.1| stage III sporulation protein AA [Brevibacillus laterosporus GI-9]
Length = 320
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 10/162 (6%)
Query: 192 VIGLTCRVGRAVAGSA-EIICDLVEGGG--SILVIGPPGVGKTTLIREIARMLADDH--- 245
+ R+ R G A +I+ L + G S LVI PP GKTTL+R++AR ++ +
Sbjct: 121 ITSFNIRIAREKKGVARDILAYLFDQGQFQSTLVISPPQCGKTTLLRDLARSISYGNEWS 180
Query: 246 -MKRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
K+V IVD +EI G + +P +G R V + + M+ + + P+ +++DE
Sbjct: 181 SSKKVGIVDERSEIAGCYNGIPQRDVGP--RTDVLDACPKAIGMMMMIRSMSPDLVVVDE 238
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
IG + ++ A GV ++ +AHG+++++I K P++ L+
Sbjct: 239 IGRQEDSEAIWEALHAGVGVLCSAHGISLEDIAKRPTISRLI 280
>gi|339010279|ref|ZP_08642849.1| stage III sporulation protein AA [Brevibacillus laterosporus LMG
15441]
gi|338772434|gb|EGP31967.1| stage III sporulation protein AA [Brevibacillus laterosporus LMG
15441]
Length = 320
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 10/162 (6%)
Query: 192 VIGLTCRVGRAVAGSA-EIICDLVEGGG--SILVIGPPGVGKTTLIREIARMLADDH--- 245
+ R+ R G A +I+ L + G S LVI PP GKTTL+R++AR ++ +
Sbjct: 121 ITSFNIRIAREKKGVARDILAYLFDQGQFQSTLVISPPQCGKTTLLRDLARSISYGNEWS 180
Query: 246 -MKRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
K+V IVD +EI G + +P +G R V + + M+ + + P+ +++DE
Sbjct: 181 SSKKVGIVDERSEIAGCYNGIPQRDVGP--RTDVLDACPKAIGMMMMIRSMSPDLVVVDE 238
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
IG + ++ A GV ++ +AHG+++++I K P++ L+
Sbjct: 239 IGRQEDSEAIWEALHAGVGVLCSAHGISLEDIAKRPTISRLI 280
>gi|357012942|ref|ZP_09077941.1| stage III sporulation protein AA [Paenibacillus elgii B69]
Length = 328
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 26/217 (11%)
Query: 149 EQIVKH------EDLKHAISKVGDFSDDNRSGI-DRSLHRISAIRNRKMQVIGLTCRVGR 201
EQ+ +H E+LK V S +R G+ R++ ++ K V G R+ R
Sbjct: 76 EQLTQHSMYTFEEELKRGFITV---SGGHRIGLAGRTVLEQGKVKYIK-DVSGFNVRLAR 131
Query: 202 AVAGSAE-IICDLVEGGGS----ILVIGPPGVGKTTLIREIARML----ADDHMKR---V 249
+A+ ++ L+E GG L++ PP GKTTL+R++AR+L AD+ ++R +
Sbjct: 132 EWKNAAKPVLPYLLEPGGERVYRTLIVSPPQQGKTTLVRDLARLLGTGGADNGLRRSFKI 191
Query: 250 VIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTEL 308
IVD +EI VP +G R V + + M+ + + PE +I DEIG
Sbjct: 192 GIVDERSEIAACVKGVPRFDVGY--RTDVLDGCPKAEGMMMMIRSMSPEVLIADEIGRAE 249
Query: 309 EALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+ALA GV ++ TAHG + + P L+ L+
Sbjct: 250 DALAIHEALHAGVGVIATAHGRDAAELKRRPILRELL 286
>gi|389571702|ref|ZP_10161791.1| stage III sporulation protein AA [Bacillus sp. M 2-6]
gi|388428596|gb|EIL86392.1| stage III sporulation protein AA [Bacillus sp. M 2-6]
Length = 307
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHM----KRVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++AR+++ ++ IVD +EI G VP G R+
Sbjct: 140 LIIGPPQTGKTTLLRDLARLVSTGTTAISPRKTGIVDERSEIAGCIRGVPQHSFGH--RI 197
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + ++ + + PE II+DEIG + A GV ++ +AHG +++++
Sbjct: 198 DVLDACPKAEGLMMMIRSMSPEVIIVDEIGKSEDVQALLEAIHAGVTIIVSAHGYSLEDL 257
Query: 336 VKNPSLQIL 344
K PS + L
Sbjct: 258 SKRPSFEPL 266
>gi|313114131|ref|ZP_07799683.1| putative stage III sporulation protein AA [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310623540|gb|EFQ06943.1| putative stage III sporulation protein AA [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 297
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 22/163 (13%)
Query: 191 QVIGLTCRVGRAVAGSA--EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR 248
QV GL R+ RAV E++ L + +LV+G P GKTTL+R+IAR LA +R
Sbjct: 121 QVQGLNLRIARAVPVQLPNELLVQLKKHFIGMLVVGEPDSGKTTLLRQIARELAGMQ-RR 179
Query: 249 VVIVDTSNEIGGDGDVPH-------SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIII 301
+VD EI GD SGI + R +Q+ A+ P+ I++
Sbjct: 180 ACVVDERCEIFPPGDSEKMPPLDLLSGIPKERAVQM------------ALRTLSPQVILL 227
Query: 302 DEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
DE+GT E A GV V + H +++ + P +Q L
Sbjct: 228 DELGTLAETAALEQGFYSGVDFVASVHAASVEEAARRPQVQAL 270
>gi|182417972|ref|ZP_02949280.1| stage III sporulation protein AA [Clostridium butyricum 5521]
gi|237668875|ref|ZP_04528859.1| stage III sporulation protein AA [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182378143|gb|EDT75678.1| stage III sporulation protein AA [Clostridium butyricum 5521]
gi|237657223|gb|EEP54779.1| stage III sporulation protein AA [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 308
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 122/263 (46%), Gaps = 47/263 (17%)
Query: 107 LLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGD 166
LL R+ +E + E+ + +G+ L G+ +++ + ED++ I K+ +
Sbjct: 18 LLKERLLKE--------QIYEIRIKIGKPILVYSKYGENIVN-YVPTKEDMRSLIQKISN 68
Query: 167 FS-----DDNRSGID--RSLHRIS-------------AIRNRKMQVIGLTCRVGRAVAGS 206
+S +D R G + HRI IRN + + RV V G
Sbjct: 69 YSLYAYEEDIRQGFITIKGGHRIGIAGECVMEKGEVKTIRN----ISSINIRVCSEVIGC 124
Query: 207 AEIICDLVEGGG-----SILVIGPPGVGKTTLIREIARMLADD------HMKRVVIVDTS 255
++ + + + ++I PP GKTT++R+IAR +++ + ++V ++D
Sbjct: 125 SDKLIKYIYSQKENRIFNTIIISPPKCGKTTILRDIARNISNGMNSIGLYGRKVAVIDER 184
Query: 256 NEIGG-DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAS 314
+EIG +P + +G R + + ++ MI A+ + PE +I DEIGT+ + A
Sbjct: 185 SEIGACHFGIPQNDLGM--RTDILDNCLKKEGMIMAIRSLSPEILICDEIGTKGDVEALL 242
Query: 315 TIAQRGVQLVGTAHGMTIDNIVK 337
GV ++ + HG TI+++ K
Sbjct: 243 MAFNSGVNIITSIHGFTIEDLYK 265
>gi|169335050|ref|ZP_02862243.1| hypothetical protein ANASTE_01456 [Anaerofustis stercorihominis DSM
17244]
gi|169257788|gb|EDS71754.1| stage III sporulation protein AA [Anaerofustis stercorihominis DSM
17244]
Length = 304
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 88/158 (55%), Gaps = 16/158 (10%)
Query: 195 LTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLA----DDHMK 247
L R+ R + G++ ++ + + G + L+I PP VGKTTL+R+I+R+++ D K
Sbjct: 116 LNIRISRQIIGASNLVLNYILNKGEVYNTLIISPPKVGKTTLLRDISRVISTNKGDFVGK 175
Query: 248 RVVIVDTSNEIGGDGD-VPHSGIG-RARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
RV IVD EI D V IG + ++ N + ++++ A+ PE II DEIG
Sbjct: 176 RVCIVDERKEIASLHDGVNELNIGDKTDVLEGINKSDGMNMLVRAMS---PEVIITDEIG 232
Query: 306 T--ELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSL 341
++ AL S ++ GV+++ +AHG + +I++ +
Sbjct: 233 KIDDISALENSVLS--GVKVISSAHGKDMKDILRKDNF 268
>gi|160934305|ref|ZP_02081692.1| hypothetical protein CLOLEP_03176 [Clostridium leptum DSM 753]
gi|156866978|gb|EDO60350.1| putative stage III sporulation protein AA [Clostridium leptum DSM
753]
Length = 336
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 11/171 (6%)
Query: 180 HRISAIRNRKMQVIGLTCRVGRAVAGSA-EIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
+R+S IR+ + L R+ R V G+A E++ +L + +L+ GPP GKTT++R++A
Sbjct: 126 NRVSGIRD----ISSLNIRIAREVYGAADELLRELDKEISGLLIAGPPSSGKTTILRDLA 181
Query: 239 RMLADDHMKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPE 297
R L+ K+VV++D E+GG + + +G + V + +++AV PE
Sbjct: 182 RQLSIKG-KKVVVIDERGELGGAFQGICQNDLGLS---DVLTGFPKGEGILQAVRCLSPE 237
Query: 298 TIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV-KNPSLQILVGG 347
II DE G+ EA A GV L+ T H +++ I ++ +Q+L G
Sbjct: 238 LIICDEAGSRQEAAAIEEGLNAGVGLITTLHAGSLEEIYRRSQGMQLLQSG 288
>gi|138895978|ref|YP_001126431.1| stage III sporulation protein AA [Geobacillus thermodenitrificans
NG80-2]
gi|196248870|ref|ZP_03147570.1| stage III sporulation protein AA [Geobacillus sp. G11MC16]
gi|134267491|gb|ABO67686.1| Stage III sporulation protein AA [Geobacillus thermodenitrificans
NG80-2]
gi|196211746|gb|EDY06505.1| stage III sporulation protein AA [Geobacillus sp. G11MC16]
Length = 306
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 13/168 (7%)
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG--GSILVIGPPGVGKTTLIREIA 238
++ AIR+ V R+ + G A+ + V G ++IG P GKTTL+R++A
Sbjct: 101 KVKAIRD----VASFNIRIAKEQVGIADPLIPYVYDGRWCHTMIIGSPQTGKTTLLRDVA 156
Query: 239 RMLADDH----MKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293
R+++ ++V IVD +EI G +P G R+ V + + M+ + +
Sbjct: 157 RLISSGTERIPAQKVAIVDERSEIAGCVKGIPQFSFGP--RLDVLDACPKAEGMMMMIRS 214
Query: 294 HMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSL 341
P+ II+DEIG E ++ A A GV + T HG +I ++ + P+L
Sbjct: 215 MSPDVIIVDEIGREEDSEAVLEAANAGVSVWTTVHGRSIKDVQQRPTL 262
>gi|325265391|ref|ZP_08132115.1| stage III sporulation protein AA [Clostridium sp. D5]
gi|324029392|gb|EGB90683.1| stage III sporulation protein AA [Clostridium sp. D5]
Length = 314
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 11/132 (8%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGDGDVPHSGIGR---AR 273
LVI PP GKTTLIR++ R ++D +M V +VD +EIGG + G+ +
Sbjct: 152 LVISPPCCGKTTLIRDLIRQISDGNMYVKGCTVGVVDERSEIGG----CYLGVAQNELGM 207
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R V + + MI + + P+ I +DEIG+ + A Q G +++ + HG+++D
Sbjct: 208 RTDVLDCCPKAEGMIMLIRSMAPQVIAVDEIGSPEDVHAIEYAMQCGCKMIASVHGLSMD 267
Query: 334 NIVKNPSLQILV 345
P L L+
Sbjct: 268 EAADKPVLGKLI 279
>gi|451819552|ref|YP_007455753.1| stage III sporulation protein AA [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451785531|gb|AGF56499.1| stage III sporulation protein AA [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 308
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 124/262 (47%), Gaps = 45/262 (17%)
Query: 106 ELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVG 165
E++ R+ +E + E+ + +G+ L G+ +I+ I+ ED+K + K+
Sbjct: 19 EIIKERINKE--------QVYELRLKVGKPILVYSKFGENLIN-YIISKEDMKSIMQKIS 69
Query: 166 DFS-----DDNRSGID--RSLHRIS-------------AIRNRKMQVIGLTCRVGRAVAG 205
++S ++ R G + HRI IRN + L R+ R V G
Sbjct: 70 NYSLYAFEEEIRQGFITIKGGHRIGIAGECVMEKGEVKTIRN----ISSLNIRICREVIG 125
Query: 206 SAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADD------HMKRVVIVDTSN 256
++ I + I ++I PP GKTT+IR+IAR +++ K+VV+VD +
Sbjct: 126 CSDKIMKYIASKIKIYNTIIISPPKCGKTTIIRDIARNISNGVFSLGVSGKKVVVVDERS 185
Query: 257 EIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST 315
EI +P S +G R V + ++ +I A+ + PE +I DEIGT+ + A
Sbjct: 186 EIAACHLGIPQSNLGL--RTDVLDNCLKREGLIMAIRSLSPEVLICDEIGTKGDTEALMM 243
Query: 316 IAQRGVQLVGTAHGMTIDNIVK 337
GV ++ T HG T++++ K
Sbjct: 244 AFNSGVNIITTIHGFTVEDLYK 265
>gi|421836386|ref|ZP_16270884.1| stage III sporulation protein AA [Clostridium botulinum
CFSAN001627]
gi|409741749|gb|EKN41434.1| stage III sporulation protein AA [Clostridium botulinum
CFSAN001627]
Length = 241
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 116/231 (50%), Gaps = 29/231 (12%)
Query: 102 ELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAI 161
E L +LPS + R +C E+ L E+ +G+ + + + + S + VK ED+K +
Sbjct: 4 EEILNILPSHISRLICDLDEVDKLQEIRFKIGKPIFFQIGNIEKLASYE-VKREDIKSIV 62
Query: 162 SKVGDFS-----DDNRSGI--DRSLHRI-----SAIRNRKMQVI----GLTCRVGRAVAG 205
++ ++S ++ + G + HR+ I K++ I L R+ R +
Sbjct: 63 QRMSNYSIYSFEEEIKQGYLTIKGGHRVGICGRCVIDEGKVKTIRDISSLNIRICREIYN 122
Query: 206 SAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLAD--DHM----KRVVIVDTSN 256
+++++ + G +L +I PP GKTT+IR+I++ ++D D + K+V ++D +
Sbjct: 123 ASKLVMPYIVENGHVLNTIIISPPKCGKTTIIRDISKKISDGVDALNLKGKKVSVIDERS 182
Query: 257 EIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
EI G + VP +G R V + + ++ A+ + PE II DEIGT
Sbjct: 183 EIAGSYNGVPQLDVG--LRTDVLDNCPKSEGIVMAIRSMAPEVIICDEIGT 231
>gi|399053816|ref|ZP_10742615.1| stage III sporulation protein AA [Brevibacillus sp. CF112]
gi|398048593|gb|EJL41065.1| stage III sporulation protein AA [Brevibacillus sp. CF112]
Length = 320
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 10/162 (6%)
Query: 192 VIGLTCRVGRAVAGSAE-IICDLVEGGG--SILVIGPPGVGKTTLIREIARMLAD----D 244
+ R+ R G+A+ ++ L EGG S LVI PP GKTTL+R++AR L+
Sbjct: 121 ITSFNIRIAREKKGAAQKVMPYLFEGGKVLSTLVISPPQCGKTTLLRDMARSLSYGSEWS 180
Query: 245 HMKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
++V IVD +E+ G VP +G R V + + + M+ + + P+ +I+DE
Sbjct: 181 SSRKVGIVDERSELAGCLQGVPQRDVGP--RTDVLDACPKAAGMMMLIRSMSPDVLIVDE 238
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+G + A GV ++ +AHG I + + P L LV
Sbjct: 239 VGRAEDGDAVWEAIHAGVAVICSAHGADIQEVARRPMLGNLV 280
>gi|317132167|ref|YP_004091481.1| stage III sporulation protein AA [Ethanoligenens harbinense YUAN-3]
gi|315470146|gb|ADU26750.1| stage III sporulation protein AA [Ethanoligenens harbinense YUAN-3]
Length = 336
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 9/158 (5%)
Query: 194 GLTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLAD--DHMKR 248
G+ R+ R G+A+ + + G + ++ GPPG GKTT++R++AR L++ R
Sbjct: 132 GINLRIAREFRGAADGLLAAIGTSGRVRGTILAGPPGCGKTTVLRDLARQLSNGVSGRCR 191
Query: 249 VVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307
V +VD EI VP + IG+ V + + +++AV P+ +I DEIG E
Sbjct: 192 VSVVDERGEIAATFKGVPQNDIGQC---DVLDGYPKGEGILQAVRCLSPDVVICDEIGGE 248
Query: 308 LEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+A A + GV ++ +AH ++ + P ++ ++
Sbjct: 249 TDARAVAASLNAGVAVIASAHAAKMEELFARPPMRAVL 286
>gi|15615360|ref|NP_243663.1| mutants block sporulation after engulfment [Bacillus halodurans
C-125]
gi|10175418|dbj|BAB06516.1| mutants block sporulation after engulfment [Bacillus halodurans
C-125]
Length = 309
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 85/160 (53%), Gaps = 11/160 (6%)
Query: 195 LTCRVGRAVAGSAEIICDLVEGGGSI--LVIGPPGVGKTTLIREIARMLADDHMKR---- 248
RV + G+AE + V G + L+IGPP GKTTL+R++AR+++ ++
Sbjct: 117 FNIRVAKQKIGTAEPLISHVYQKGWLNTLLIGPPQSGKTTLLRDLARLVSVGWSRKGIPP 176
Query: 249 --VVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
V IVD +EI VP +G R+ V + + M+ + + P+ +I+DEIG
Sbjct: 177 LKVGIVDERSEIAAAVKGVPQHELGM--RVDVLDGCPKAEGMMMMIRSMSPDVLIVDEIG 234
Query: 306 TELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+ + +A GV+++ TAHG ++ + K P+++ L+
Sbjct: 235 RKEDCVAIQEALHAGVKVMTTAHGYELEEVSKRPAIRELL 274
>gi|374603523|ref|ZP_09676501.1| stage III sporulation protein AA [Paenibacillus dendritiformis
C454]
gi|374390825|gb|EHQ62169.1| stage III sporulation protein AA [Paenibacillus dendritiformis
C454]
Length = 341
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 27/210 (12%)
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAG-SAEIICDLVEGGGS----ILVIGPPGVGKTTLIR 235
R+S +R ++ G R+ R V G +A ++ L++ + L++ PP GKTTL+R
Sbjct: 116 RVSHLR----EITGFNLRIAREVHGIAASVMPMLLDFKHAHVHHTLIVSPPQQGKTTLLR 171
Query: 236 EIARMLADDHMK---------RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHS 285
++ R + +V +VD +EI G VP +G R V + +
Sbjct: 172 DLVRAIGSGLWHHPEARWKALKVGVVDERSEIAGCIKGVPSYDLGY--RTDVMDGCPKAE 229
Query: 286 VMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
M+ + + P+ + +DE+G E + LA GV+L+ TAH +D++++ P LQ L+
Sbjct: 230 GMMMFIRSMSPDVLAVDEMGREEDLLAMREAMHAGVRLIATAHAEDMDDLLRRPGLQQLL 289
Query: 346 --GGIES-VTLGDEEAKKRKVQKTILERKG 372
G VTL KR+ Q+ + + KG
Sbjct: 290 EEGAFRRIVTL---RRAKREWQRRVYDEKG 316
>gi|392941068|ref|ZP_10306712.1| LOW QUALITY PROTEIN: stage III sporulation protein AA
[Thermoanaerobacter siderophilus SR4]
gi|392292818|gb|EIW01262.1| LOW QUALITY PROTEIN: stage III sporulation protein AA
[Thermoanaerobacter siderophilus SR4]
Length = 332
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 13/160 (8%)
Query: 194 GLTCRVGRAVAGSAEIICDLV----EGGGSILVIGPPGVGKTTLIREIARMLAD--DHM- 246
G R+ + + G AE I + + +IL+I PP GKTTL+R+I R +++ D +
Sbjct: 129 GYNYRISKEIIGVAEEILKYLITPSKNVYNILIISPPQCGKTTLLRDITRWISNGIDFLG 188
Query: 247 ---KRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
K+V VD +EI G + +P +G R V + + MI + + PE ++ D
Sbjct: 189 FKGKKVGAVDERSEIAGCYNGIPQMDVGI--RTDVLDGCPKAYGMIMLIRSMSPEVVVTD 246
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
EIG + + A + GV+++ T H I++++K P L+
Sbjct: 247 EIGKKEDIEAIHEVLNTGVKIITTVHANDIEDLMKKPVLK 286
>gi|347753237|ref|YP_004860802.1| stage III sporulation protein AA [Bacillus coagulans 36D1]
gi|347585755|gb|AEP02022.1| stage III sporulation protein AA [Bacillus coagulans 36D1]
Length = 308
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 122/270 (45%), Gaps = 33/270 (12%)
Query: 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDLG---RKPLARFPSGDWVISEQIVKHEDL 157
+E L +LP + +L +LGD++E V ++ +PL G + D
Sbjct: 1 MEDLLGILPKSLSNQL---EKLGDILEDVEEIRIRVNRPLEITSKGIPYFLRYMPTESDA 57
Query: 158 KHAISKVGDFS-----DDNRSGI--DRSLHRIS-----AIRNRKMQVI----GLTCRVGR 201
+ IS++ +FS ++ + G HR+ + N +++ I R+ R
Sbjct: 58 EQLISRLANFSFYALEEELKKGYVTISGGHRVGFAGKVILENGQVKAIRYFSSFNIRIAR 117
Query: 202 AVAGSAEIICDLVEGGG--SILVIGPPGVGKTTLIREIARMLADDHMKR------VVIVD 253
G+A+ + G S ++IG P GKTT +R+IAR+++ +R V IVD
Sbjct: 118 EKIGTADPYLSALHNGHWLSAMIIGAPQTGKTTFLRDIARLISTGIPERGISPAKVGIVD 177
Query: 254 TSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALA 312
+EI G +P G R+ V + + M+ + + P+ II+DEIG E +A A
Sbjct: 178 ERSEIAGCVHGIPQLHFGP--RVDVLDACPKAEGMMMLIRSMSPDVIIVDEIGREEDAAA 235
Query: 313 ASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
G+ LV T HG +I K P L+
Sbjct: 236 IMEAVNAGISLVMTTHGENFRDINKRPILK 265
>gi|345017586|ref|YP_004819939.1| stage III sporulation protein AA [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344032929|gb|AEM78655.1| stage III sporulation protein AA [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 332
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 13/160 (8%)
Query: 194 GLTCRVGRAVAGSAEIICDLV----EGGGSILVIGPPGVGKTTLIREIARMLAD--DHM- 246
G R+ + + G AE I + + +IL+I PP GKTTL+R+I R +++ D +
Sbjct: 129 GYNYRISKEIIGVAEEILKYLITPSKDVYNILIISPPQCGKTTLLRDITRWISNGIDFLG 188
Query: 247 ---KRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
K+V VD +EI G + +P +G R V + + MI + + PE ++ D
Sbjct: 189 FKGKKVGAVDERSEIAGCYNGIPQMDVGI--RTDVLDGCPKAYGMIMLIRSMSPEVVVTD 246
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
EIG + + A + GV+++ T H I++++K P L+
Sbjct: 247 EIGKKEDIEAIHEVLNTGVKIITTVHANDIEDLMKKPVLK 286
>gi|300854289|ref|YP_003779273.1| stage III sporulation protein AA [Clostridium ljungdahlii DSM
13528]
gi|300434404|gb|ADK14171.1| predicted stage III sporulation protein AA [Clostridium ljungdahlii
DSM 13528]
Length = 308
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 127/288 (44%), Gaps = 57/288 (19%)
Query: 98 DIELELFLELLPSRMRRELCMHRELGDLIE--------------VVMDLGRKPLARFPSG 143
+I+ + L ++P ++ L GDLIE +++ LG +
Sbjct: 3 EIDTKEILNIIPENLKVAL------GDLIESPNLQEIRIRVDRSLILQLGERE------- 49
Query: 144 DWVISEQIVKHEDLKHAISKVGDFS-----DDNRSGID--RSLHRISAIRNRKMQ----- 191
V+ + I K ED++ I ++ ++S ++ + G + HR+ M+
Sbjct: 50 --VVCKYIPKLEDIRTIIKRMSNYSIYAFEEEIKQGYITIKGGHRVGICGRCVMEKDEVK 107
Query: 192 ----VIGLTCRVGRAVAGSAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLADD 244
+ L R+ R V ++ I + G I+ +I PP GKTTL+R+I R ++
Sbjct: 108 TIKDIASLNIRICREVVNCSDSIMKFISKGNEIINTIIISPPKCGKTTLVRDIVRNISQG 167
Query: 245 ------HMKRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPE 297
K+V ++D +EIG + VP +G R + + + +I A+ + PE
Sbjct: 168 VKNIGLTGKKVSVIDERSEIGACFNGVPQLNVGV--RTDILDGCPKSQGIIMAIRSMSPE 225
Query: 298 TIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
I+ DEIGT + + T G+ L+ T HG I+++ P + +V
Sbjct: 226 VIVCDEIGTYRDMDSIVTALNSGISLIITIHGYGIEDLYNRPVFKEIV 273
>gi|296333400|ref|ZP_06875853.1| stage III sporulation protein AA [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675094|ref|YP_003866766.1| ATP-binding stage III sporulation protein [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296149598|gb|EFG90494.1| stage III sporulation protein AA [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413338|gb|ADM38457.1| ATP-binding stage III sporulation protein [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 307
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 20/193 (10%)
Query: 192 VIGLTCRVGRAVAGSAEIICDLV--EGGGSILVIGPPGVGKTTLIREIARM--LADDHMK 247
+ R+ R G AE + + + + L+IGPP GKTTL+R++AR+ +H+
Sbjct: 109 ITSFNIRIARQKLGIAEPLLPFLYRDSWLNTLIIGPPQTGKTTLLRDLARLSSTGKNHIL 168
Query: 248 --RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
+ IVD +EI G +P G+ R+ V + + ++ + + PE II+DEI
Sbjct: 169 PVKTGIVDERSEIAGCLRGIPQHQFGQ--RIDVLDACPKAEGLMMMIRSMSPEVIIVDEI 226
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQ 364
G + A GV ++ +AHG +I +++K PSL+ L +E A R ++
Sbjct: 227 GRVEDTDALLEALHAGVSVIVSAHGWSISDLMKRPSLK---------RLWEERAFDRYLE 277
Query: 365 KTILERKGPPTFT 377
+ KGP T +
Sbjct: 278 LS--RAKGPGTVS 288
>gi|157692942|ref|YP_001487404.1| stage III sporulation protein AA [Bacillus pumilus SAFR-032]
gi|157681700|gb|ABV62844.1| stage III sporulation protein AA [Bacillus pumilus SAFR-032]
Length = 307
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHM----KRVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R+IAR+ + K+ I+D +EI G VP G R+
Sbjct: 140 LIIGPPQTGKTTLLRDIARLASTGTKAIPPKKTGIIDERSEIAGCIRGVPQHQFGH--RV 197
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + ++ + + PE +I+DEIG + A GV ++ + HG +++++
Sbjct: 198 DVLDACPKAEGLMMMIRSMSPEVMIVDEIGKSEDVQALLEAIHAGVSIIVSVHGYSLEDV 257
Query: 336 VKNPSLQIL 344
K PSL+ L
Sbjct: 258 YKRPSLKPL 266
>gi|402815122|ref|ZP_10864715.1| stage III sporulation protein AA [Paenibacillus alvei DSM 29]
gi|402507493|gb|EJW18015.1| stage III sporulation protein AA [Paenibacillus alvei DSM 29]
Length = 335
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 25/208 (12%)
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSA-EIICDLVEGGG----SILVIGPPGVGKTTLIR 235
R+S +R+ + G R+ R VAG A EII L++ S LV+ PP GKTT++R
Sbjct: 116 RVSHLRD----ITGFNLRIAREVAGIADEIIPQLLDFAHRTIYSTLVVSPPQHGKTTMLR 171
Query: 236 EIARMLAD---DHMK------RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHS 285
++AR ++ +H + +V IVD +EI G VP +G R V + +
Sbjct: 172 DMARAVSSGCWNHPQAVWKALKVGIVDERSEIAGCMKGVPSYNLGY--RTDVIDGCPKAE 229
Query: 286 VMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
++ + + P+ +++DE G E + A GV+++ + HG +++I++ P L L+
Sbjct: 230 GLMMFIRSMSPDVLVVDEFGREEDYDAMQEAIHAGVRMIASVHGSDVEDILRRPGLASLL 289
Query: 346 --GGIESVTLGDEEAKKRKVQKTILERK 371
GG + + R+ Q+ + + K
Sbjct: 290 DEGGFSRIVV--LRRTSRQWQRKVYDGK 315
>gi|326390193|ref|ZP_08211754.1| stage III sporulation protein AA [Thermoanaerobacter ethanolicus JW
200]
gi|325993841|gb|EGD52272.1| stage III sporulation protein AA [Thermoanaerobacter ethanolicus JW
200]
Length = 332
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 13/160 (8%)
Query: 194 GLTCRVGRAVAGSAEIICDLV----EGGGSILVIGPPGVGKTTLIREIARMLAD--DHM- 246
G R+ + + G AE I + + +IL+I PP GKTTL+R+I R +++ D +
Sbjct: 129 GYNYRISKEIIGVAEEILKYLITPSKDVYNILIISPPQCGKTTLLRDITRWISNGIDFLG 188
Query: 247 ---KRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
K+V VD +EI G + +P +G R V + + MI + + PE ++ D
Sbjct: 189 FKGKKVGAVDERSEIAGCYNGIPQMDVGI--RTDVLDGCPKAYGMIMLIRSMSPEVVVTD 246
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
EIG + + A + GV+++ T H I++++K P L+
Sbjct: 247 EIGKKEDIEAIHEVLNTGVKIITTVHANDIEDLMKKPVLK 286
>gi|346722887|ref|YP_001180908.2| AAA ATPase [Caldicellulosiruptor saccharolyticus DSM 8903]
gi|345106858|gb|ABP67717.2| AAA ATPase [Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 248
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 25/181 (13%)
Query: 159 HAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAG-SAEIICDLVEGG 217
H I G F+ D + I SL+ I+ GL RV +++ G ++I ++
Sbjct: 38 HRIGVAGKFTSDGKRII--SLNSIT----------GLNIRVAKSIEGIGIKVIKHILNPS 85
Query: 218 GSI---LVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGGDGDVPHSG 268
SI L++ PPG GKTTL+R+I R+L++ + RVV++D +EI S
Sbjct: 86 KSIYNTLIVSPPGCGKTTLLRDIVRILSNGEINLSFGGFRVVVIDERSEISTYSQ-EQSK 144
Query: 269 IGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAH 328
+G R + V+ + V + A+ + P+ I +DE+G + LA + ++ GV+++ T H
Sbjct: 145 LG-TRTFVLDGVDKLNGVFM-AIRSLNPQIIAMDELGGPQDYLAVAEASKMGVKVIATMH 202
Query: 329 G 329
G
Sbjct: 203 G 203
>gi|347542681|ref|YP_004857318.1| stage III sporulation protein AA [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985717|dbj|BAK81392.1| stage III sporulation protein AA [Candidatus Arthromitus sp.
SFB-rat-Yit]
Length = 280
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 27/200 (13%)
Query: 155 EDLKHAISKVGDFS-----DDNRSGID--RSLHRIS-----AIRNRKMQVI----GLTCR 198
ED++ I+K+ +S +D + G + HR+ NR+++ + L R
Sbjct: 39 EDIRATINKISKYSIFAFEEDVKQGFITIQGGHRVGITGEWVFENREVKYLKNISSLNIR 98
Query: 199 VGRAVAGSAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLAD-----DHMKRVV 250
+ R V+G + + + GG IL +I PP GKTTL+R++++++++ + +V
Sbjct: 99 ICREVSGFGKKFINHIYKGGEILNTLIISPPKCGKTTLLRDLSKIISNGDSPLNRGFKVS 158
Query: 251 IVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELE 309
I+D +EI VP IG R + + ++ +I A+ + PE I+ DEIGT +
Sbjct: 159 IIDERSEIAASFRGVPQLDIGI--RTDIYDNCLKSKGIILAIRSMAPEVIVCDEIGTRED 216
Query: 310 ALAASTIAQRGVQLVGTAHG 329
+ GV ++ T HG
Sbjct: 217 FESILVAYNSGVSIISTIHG 236
>gi|125973363|ref|YP_001037273.1| stage III sporulation protein spoIIIAA [Clostridium thermocellum
ATCC 27405]
gi|256005469|ref|ZP_05430432.1| stage III sporulation protein AA [Clostridium thermocellum DSM
2360]
gi|281417563|ref|ZP_06248583.1| stage III sporulation protein AA [Clostridium thermocellum JW20]
gi|385778725|ref|YP_005687890.1| stage III sporulation protein AA [Clostridium thermocellum DSM
1313]
gi|419722089|ref|ZP_14249238.1| stage III sporulation protein AA [Clostridium thermocellum AD2]
gi|419724836|ref|ZP_14251893.1| stage III sporulation protein AA [Clostridium thermocellum YS]
gi|125713588|gb|ABN52080.1| stage III sporulation protein AA [Clostridium thermocellum ATCC
27405]
gi|255990609|gb|EEU00728.1| stage III sporulation protein AA [Clostridium thermocellum DSM
2360]
gi|281408965|gb|EFB39223.1| stage III sporulation protein AA [Clostridium thermocellum JW20]
gi|316940405|gb|ADU74439.1| stage III sporulation protein AA [Clostridium thermocellum DSM
1313]
gi|380771725|gb|EIC05588.1| stage III sporulation protein AA [Clostridium thermocellum YS]
gi|380781843|gb|EIC11492.1| stage III sporulation protein AA [Clostridium thermocellum AD2]
Length = 336
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 128/272 (47%), Gaps = 41/272 (15%)
Query: 145 WVISEQIVKHEDLKHAISKVGDFSDDNRSGI--DRSLHRIS----------AIRNRKMQV 192
+V EQI K +L + + F D+ R+G R HR+ ++N K V
Sbjct: 81 YVSQEQIAKTLELISE-NSIYAFQDEIRNGFLTIRGGHRVGIVGRVVLNGDTVKNIK-DV 138
Query: 193 IGLTCRVGRAVAG-SAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLAD--DHM 246
GL R+ R + G S++++ ++ + L++ PP GKTTL+R+I R ++D + M
Sbjct: 139 SGLNIRISREITGCSSKVLKYIISSEKQVYNTLIVSPPQCGKTTLLRDITRAISDGVEEM 198
Query: 247 K----RVVIVDTSNEIGG-DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIII 301
+V +VD +EI VP + +G R V + + MI + + P+ I+
Sbjct: 199 GFKGVKVGVVDERSEIAACYKGVPQNRVGT--RTDVLDACPKQIGMIMMLRSMSPDVIVT 256
Query: 302 DEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKR 361
DEIG + + A + GV+++ TAHG I + E ++L +E+ +R
Sbjct: 257 DEIGNKGDKDALIQVLNAGVKVISTAHGYNISELKSRK---------EVLSLIEEKMFER 307
Query: 362 KVQKTILERKGPPTFTCAVEMISRTECRVHHR 393
+ + RKGP T E+I T+ + ++
Sbjct: 308 YI--VLSARKGPGTVE---EIIDGTDMSILYK 334
>gi|433542466|ref|ZP_20498893.1| stage III sporulation protein AA [Brevibacillus agri BAB-2500]
gi|432186277|gb|ELK43751.1| stage III sporulation protein AA [Brevibacillus agri BAB-2500]
Length = 258
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 10/156 (6%)
Query: 198 RVGRAVAGSAE-IICDLVEGGG--SILVIGPPGVGKTTLIREIARMLAD----DHMKRVV 250
R+ R G+A+ ++ L EGG S LVI PP GKTTL+R++AR L+ ++V
Sbjct: 65 RIAREKKGAAQKVMPYLFEGGKVLSTLVISPPQCGKTTLLRDMARSLSYGSEWSSSRKVG 124
Query: 251 IVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELE 309
IVD +E+ G VP +G R V + + + M+ + + P+ +I+DE+G +
Sbjct: 125 IVDERSELAGCLQGVPQRDVGP--RTDVLDACPKAAGMMMLIRSMSPDVLIVDEVGRAED 182
Query: 310 ALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
A GV ++ +AHG I + + P L LV
Sbjct: 183 GDAVWEAIHAGVAVICSAHGADIQEVARRPMLGNLV 218
>gi|164688622|ref|ZP_02212650.1| hypothetical protein CLOBAR_02267 [Clostridium bartlettii DSM
16795]
gi|164603035|gb|EDQ96500.1| stage III sporulation protein AA [Clostridium bartlettii DSM 16795]
Length = 321
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 42/225 (18%)
Query: 155 EDLKHAISK--VGDFSDDNRSGID--RSLHRISA-----IRNRKMQVI----GLTCRVGR 201
ED I K V F DD + G R HRI I N +++ I L RV R
Sbjct: 74 EDTFQIICKYSVHSFMDDIKKGFITLRGGHRIGIVGKVIIENGQVKNIKHISSLNIRVSR 133
Query: 202 AVAG-SAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMK------RVVI 251
+ G S +++ +++ I ++I PP GKTT++R+I R +++ + + +V +
Sbjct: 134 EIKGCSKKVLPHIIKNKNQINNTIIISPPQCGKTTILRDIVRNISNGNREYGFSGVKVAL 193
Query: 252 VDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVM---------IEAVENHMPETIIID 302
+D NEI G S +G A+ +V M+ VM + + + P I+ D
Sbjct: 194 IDERNEIAG------SCMGVAQ----LDVGMRTDVMETCPKDLGIMMVLRSMSPNVIVTD 243
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGG 347
EIG E E A T GV L+ T HG +I++I+ L+ L+ G
Sbjct: 244 EIGNEKEIKALYTALNGGVSLITTVHGDSIEDILHRTELKRLLDG 288
>gi|302387582|ref|YP_003823404.1| stage III sporulation protein AA [Clostridium saccharolyticum WM1]
gi|302198210|gb|ADL05781.1| stage III sporulation protein AA [Clostridium saccharolyticum WM1]
Length = 335
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 195 LTCRVGRAVAGSA-EIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLAD---DHMK 247
+ R+ V G A +++ L E G I L+I PP GKTTL+R++ R +++ DH
Sbjct: 126 INVRLSHQVKGCASQVLPYLYEEGREIYHTLIISPPRCGKTTLLRDMIRQVSNGTEDHTG 185
Query: 248 RVV-IVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
V +VD +EIG VP + +G R + + + M+ + P I +DEIG
Sbjct: 186 LTVGVVDERSEIGACYQGVPQNELGI--RTDILDCCPKAKGMMMLIRTMSPRVIAVDEIG 243
Query: 306 TELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+ + A + G +L+ T HG +ID++ + P L+ LV
Sbjct: 244 SREDLEAMEYVMNCGCKLIATVHGNSIDDLKQKPVLRKLV 283
>gi|336114346|ref|YP_004569113.1| stage III sporulation protein AA [Bacillus coagulans 2-6]
gi|335367776|gb|AEH53727.1| stage III sporulation protein AA [Bacillus coagulans 2-6]
Length = 310
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 124/272 (45%), Gaps = 33/272 (12%)
Query: 99 IELELFLELLPSRMRRELCMHRELGDLIEVVMDLG---RKPLARFPSGDWVISEQIVKHE 155
+++E L +LP + ++L +LGD++E V ++ +PL G
Sbjct: 1 MKMEDLLGILPKTLSKQL---EKLGDMLEDVEEIRIRVNRPLEITSKGIPHFLRYTPTES 57
Query: 156 DLKHAISKVGDFS-----DDNRSGID--RSLHRIS-----AIRNRKMQVI----GLTCRV 199
D + IS++ +FS ++ + G HR+ + N +++ I R+
Sbjct: 58 DAEQLISRLANFSFYALEEELKKGYVTISGGHRVGFAGKVILENGQVKAIRYFSSFNIRI 117
Query: 200 GRAVAGSAEIICDLVEGGG--SILVIGPPGVGKTTLIREIARMLADDHMKR------VVI 251
R G+A+ + G S ++IG P GKTT +R+IAR+++ +R V I
Sbjct: 118 AREKIGTADPYLFALHNGRWLSAMIIGAPQTGKTTFLRDIARLISSGIPERGISPAKVGI 177
Query: 252 VDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEA 310
VD +EI G +P G R+ V + + M+ + + P+ I++DEIG E +A
Sbjct: 178 VDERSEIAGCVHGIPQLHFGP--RVDVLDACPKAEGMMMLIRSMSPDVIVVDEIGREEDA 235
Query: 311 LAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
A G+ LV T HG +I K P L+
Sbjct: 236 AAIMEAVNAGISLVMTTHGENFRDIQKRPILK 267
>gi|358062401|ref|ZP_09149047.1| stage III sporulation protein AA [Clostridium hathewayi WAL-18680]
gi|356699530|gb|EHI61044.1| stage III sporulation protein AA [Clostridium hathewayi WAL-18680]
Length = 320
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 11/167 (6%)
Query: 188 RKMQVIG-LTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLAD 243
R M+ + + R+ V G A + + GG I LVI PP GKTTL+R++ R +++
Sbjct: 118 RSMKYVSFINVRLSHQVKGCASAVLPYLYHGGDIFHTLVISPPRCGKTTLLRDMIRQISN 177
Query: 244 DHMKR----VVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPET 298
K V ++D +EIG VP + +G R + + + M+ + P
Sbjct: 178 GTGKEPGMTVGVIDERSEIGACYQGVPQNELGI--RTDILDCCPKARGMMMLIRTMSPRV 235
Query: 299 IIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
I +DEIG+ + A + G +L+ T HG ++++I + P L+ LV
Sbjct: 236 IAVDEIGSREDLEAMEYVMNCGCKLIATVHGNSVEDIKQKPVLRKLV 282
>gi|365157824|ref|ZP_09354069.1| stage III sporulation protein AA [Bacillus smithii 7_3_47FAA]
gi|363622494|gb|EHL73653.1| stage III sporulation protein AA [Bacillus smithii 7_3_47FAA]
Length = 309
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 195 LTCRVGRAVAG-SAEIICDLVEGGGS-ILVIGPPGVGKTTLIREIARMLAD--DHMK--- 247
R+ R + G S +I L E G ++IG P GKTTL+R+IAR+++ D +
Sbjct: 112 FNIRIAREIIGISRPLIPFLFEKGWKHTMIIGAPQTGKTTLLRDIARVVSTGCDQLNIPS 171
Query: 248 -RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
+V IVD +EI G +P G R+ V + + M+ + + P+ +++DEIG
Sbjct: 172 LKVGIVDERSEIAGCMFGIPQLSFGP--RVDVLDACPKAEGMMMMIRSMSPDVLVVDEIG 229
Query: 306 TELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
E + +A GV+LV T HG +++ I K P L +V
Sbjct: 230 REEDRMAVLEAVNAGVKLVMTTHGDSLEEIQKRPLLADIV 269
>gi|398304497|ref|ZP_10508083.1| stage III sporulation protein AA [Bacillus vallismortis DV1-F-3]
Length = 307
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 86/168 (51%), Gaps = 30/168 (17%)
Query: 221 LVIGPPGVGKTTLIREIARM--LADDHMK--RVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++AR+ + M + IVD +EI G +P G+ R+
Sbjct: 140 LIIGPPQTGKTTLLRDLARLSSTGKNGMSPAKTGIVDERSEIAGCLRGIPQHQFGQ--RI 197
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIG------TELEALAASTIAQRGVQLVGTAHG 329
V + + ++ + + PE II+DEIG LEAL A GV ++ +AHG
Sbjct: 198 DVLDACPKAEGLMMMIRSMSPEVIIVDEIGRIEDTDALLEALHA------GVSVIVSAHG 251
Query: 330 MTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFT 377
+I +++K PSL+ L +E A R ++ + KGP T +
Sbjct: 252 WSISDLMKRPSLK---------RLWEERAFDRYLELS--RAKGPGTIS 288
>gi|291520786|emb|CBK79079.1| stage III sporulation protein AA [Coprococcus catus GD/7]
Length = 351
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 10/156 (6%)
Query: 195 LTCRVGRAVAGSA-EIICDLVEGG--GSILVIGPPGVGKTTLIREIARMLAD----DHMK 247
L R+ V G A E++ L E G S L++ PPG GKTT++R++ R ++ + +
Sbjct: 126 LNVRLAHEVRGCADELMPWLYEEGRPCSTLILSPPGCGKTTMLRDVIRQFSNGCGQEAGR 185
Query: 248 RVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
RV +VD +EI +P + +G R V + +H M + + PE + +DEIG+
Sbjct: 186 RVGVVDERSEIAACYRGIPQNDMGI--RTDVLDGCAKHMGMQMMLRSMTPEILAVDEIGS 243
Query: 307 ELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
+ A + G L+ TAHG +++ + P+L+
Sbjct: 244 RTDKEAIDAVMNCGCCLLATAHGASMEKMQMRPALR 279
>gi|226323219|ref|ZP_03798737.1| hypothetical protein COPCOM_00991 [Coprococcus comes ATCC 27758]
gi|225208409|gb|EEG90763.1| stage III sporulation protein AA [Coprococcus comes ATCC 27758]
Length = 305
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 119/267 (44%), Gaps = 28/267 (10%)
Query: 104 FLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK 163
L +LP ++R L H + I+ + +PLA G + V E+L+ +
Sbjct: 9 ILAVLPEKIRGILLNHGLDFEKIQEIRLREEQPLAVKKEGKEELFTHRVTKEELRETMEY 68
Query: 164 VGDFS-----DDNRSGI--DRSLHRIS----------AIRNRKMQVIGLTCRVGRAVAGS 206
V ++S ++ R G HR+ IRN + + + R+ + G
Sbjct: 69 VSNYSLYAYENELRQGFLTIEGGHRVGISGKIISEKEQIRNFQY-ITSINIRICHEITGC 127
Query: 207 AEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHM----KRVVIVDTSNEIG 259
A + ++ G + ++I PPG GKTTL+R++ R ++D + + V +VD +EIG
Sbjct: 128 ANKLFPVILEKGRLCHTMIISPPGGGKTTLLRDLVRQISDGNRWVEGRNVGVVDERSEIG 187
Query: 260 GDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ 318
G VP + +G R + + + M+ V + PE I DEIGT + A
Sbjct: 188 GCYRGVPQNQLGM--RTDILDNCPKAEGMMMLVRSMAPEVIAADEIGTAKDVEAIEYAMH 245
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQILV 345
G ++ T HG +D I + P + LV
Sbjct: 246 CGATMLTTVHGSGMDEIREKPLVSNLV 272
>gi|386759038|ref|YP_006232254.1| ATP-binding stage III sporulation protein [Bacillus sp. JS]
gi|384932320|gb|AFI28998.1| ATP-binding stage III sporulation protein [Bacillus sp. JS]
Length = 307
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++AR+ + + + IVD +EI G +P G+ R+
Sbjct: 140 LIIGPPQTGKTTLLRDLARLSSTGKNRMLPVKTGIVDERSEIAGCLRGIPQHQFGQ--RI 197
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + ++ + + PE +I+DEIG + A GV ++ +AHG +I ++
Sbjct: 198 DVLDACPKAEGLMMMIRSMSPEVMIVDEIGRMEDTDALLEALHAGVSVIVSAHGWSISDL 257
Query: 336 VKNPSLQIL 344
+K PSL+ L
Sbjct: 258 MKRPSLKRL 266
>gi|408356526|ref|YP_006845057.1| stage III sporulation protein AA [Amphibacillus xylanus NBRC 15112]
gi|407727297|dbj|BAM47295.1| stage III sporulation protein AA [Amphibacillus xylanus NBRC 15112]
Length = 322
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLAD--DHM--KRVVIVDTSNEIGGDGD-VPHSGIGRARRM 275
L++GPP GKTTLIR+I+R++ HM K+V IVD +EI G + +P +G +R
Sbjct: 143 LIVGPPQSGKTTLIRDISRLIGTGWGHMEAKKVGIVDERSEIAGSRNGIPFYQVG--KRT 200
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + M+ + + P+ II+DEIG+ + A + + GV LV T H + +I
Sbjct: 201 DVLDNCPKSEGMMLMIRSMSPDIIIVDEIGSVRDIEAIQEVIRSGVGLVCTLHSDSYQSI 260
Query: 336 VKNPSLQ 342
++ L+
Sbjct: 261 KQSKHLK 267
>gi|332652603|ref|ZP_08418348.1| stage III sporulation protein AA [Ruminococcaceae bacterium D16]
gi|332517749|gb|EGJ47352.1| stage III sporulation protein AA [Ruminococcaceae bacterium D16]
Length = 303
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 28/269 (10%)
Query: 127 EVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAI-----SKVGDFSDDNRSGI--DRSL 179
E+ + +G A FP G+ + V DL+ + + V +D R G
Sbjct: 37 ELRLRIGHPMTAVFPQGELSLGTNPVTGRDLEQLLELASRASVHTVADQLRRGYLTVEGG 96
Query: 180 HRISAIRN---RKMQVIGL------TCRVGRAVAGSAEIICD-LVEGGGSI---LVIGPP 226
HR+ R Q+ GL RV R V G+A + L+E G++ L++ PP
Sbjct: 97 HRVGLCGTPVLRDGQIHGLGRLSSAAIRVARQVTGAAAPVAQKLLEQSGALCSTLILAPP 156
Query: 227 GVGKTTLIREIARMLADDHM---KRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNM 282
G GKTTL+R++ RM++ +RV + D E+ + VP +G R V
Sbjct: 157 GAGKTTLLRDLIRMVSHGEGMTPQRVAVADERGEVAALWNGVPQLDVG--ERTDVLEGCP 214
Query: 283 QHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
+ ++ + P+ + DEI + A + A GV+L+ TAHG +++ + P +
Sbjct: 215 KAQALMMLLRAMNPQVLAADEITAPEDVAALISAAGCGVKLLATAHGSAREDLARRPLYR 274
Query: 343 ILVGG--IESVTLGDEEAKKRKVQKTILE 369
L+ E + L + + +R + +LE
Sbjct: 275 ELMAAKVFERLLLIETKNGRRSYRVEVLE 303
>gi|291542877|emb|CBL15987.1| Uncharacterized protein conserved in bacteria [Ruminococcus bromii
L2-63]
Length = 316
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 198 RVGRAVAGSAEIICD-LVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN 256
R+GR G A+ + + ++ G +L+ G P GKTT++R++AR+L+ K V ++D
Sbjct: 138 RIGREHKGCADSLYNKIIAVSGGVLICGAPCSGKTTVLRDLARLLSTKGKKNVALIDERG 197
Query: 257 EIGGDGDVP-HSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST 315
E+ G + IG N + M+ A+ + PE II DEIG++ + A
Sbjct: 198 ELAGTASGKFQNDIGMCDVYDSYN---KSEAMLHAIRSMAPEIIICDEIGSKEDIYAVEK 254
Query: 316 IAQRGVQLVGTAH 328
GV+++ + H
Sbjct: 255 SINCGVRIISSTH 267
>gi|312793180|ref|YP_004026103.1| aaa atpase [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180320|gb|ADQ40490.1| AAA ATPase [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 313
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 124/277 (44%), Gaps = 50/277 (18%)
Query: 97 ADIELELFLELLPSRMRR--ELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKH 154
+ E+E L+ LP+ + ++ + L ++ E+ ++L PL ++V I+
Sbjct: 6 VNTEVEKLLDKLPAEIVYTIKMAFEKRLHEICEIKINL-NCPLIVIGKREYVFDSLIITK 64
Query: 155 EDLKHAISKV--------------GDFSDDNRSGIDRSLHRISA-----IRNRKMQ---- 191
E L IS++ G F+ D HRI N Q
Sbjct: 65 EILNKCISRLTNNSLFTYEKNILQGYFTVDGG-------HRIGVAGKFTFENGNKQGFVS 117
Query: 192 -VIGLTCRVGRAVAGSAE-----IICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDH 245
+ GL RV +AV E I+ + ++ + L+I PPG GKTTL+R I R+L+
Sbjct: 118 SISGLNIRVSKAVRIEPEKILKNIVKENLDSIYNTLIISPPGCGKTTLLRNIIRILSSGE 177
Query: 246 ------MKRVVIVDTSNEIGG-DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPET 298
RVV++D +EI D D GI R + V+ +++ AV + P+
Sbjct: 178 GILAGRGFRVVVIDERSEICAVDNDRREIGI---RTFVLDGVDKLRGILM-AVRSLNPQI 233
Query: 299 IIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
I +DE+G+ + LA ++ GV+++ T H ++ +I
Sbjct: 234 IAMDELGSPSDYLAVCEASKMGVKIIATMHAESVKDI 270
>gi|291545427|emb|CBL18535.1| stage III sporulation protein AA [Ruminococcus sp. SR1/5]
Length = 310
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 112/249 (44%), Gaps = 31/249 (12%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQ-----IVKHEDLKHAISKVGDFS-----DDNRSG 174
L E+ + +GR + G+ + ++ +V EDLK + V +S D+ R G
Sbjct: 28 LYEIRLRVGRPLFLTYDGGECFLRQKDTEPYLVTREDLKETLEYVSGYSLYAYEDEIRQG 87
Query: 175 I--DRSLHRISAI--------RNRKMQVIG-LTCRVGRAVAGSAEIICDLVEGGGSI--- 220
+ HR+ R R M+ I + R+ + G AE + ++ I
Sbjct: 88 FLSVQGGHRVGVTGKVILDGNRIRGMKYISCINVRLAHEIQGCAEEVLPYIQTREQIMHT 147
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGDGD-VPHSGIGRARRM 275
L++ PP GKTTL+R+I R +++ V +VD +E+ G +P + +G R
Sbjct: 148 LIVSPPRCGKTTLLRDIIRQMSNGWGNISGVTVGVVDERSELAGCYQGIPQNDLGM--RT 205
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
+ + + M + + P + +DE+G E + A ++ G +L+ TAHG +++
Sbjct: 206 DILDGCPKAEGMQMLIRSMSPVVVAVDELGKEEDFKAVESVIHCGCRLIATAHGASMEET 265
Query: 336 VKNPSLQIL 344
+ P + L
Sbjct: 266 LSQPFFRKL 274
>gi|255280238|ref|ZP_05344793.1| stage III sporulation protein AA [Bryantella formatexigens DSM
14469]
gi|255269329|gb|EET62534.1| stage III sporulation protein AA [Marvinbryantia formatexigens DSM
14469]
Length = 381
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGDG-DVPHSGIGRARRM 275
L+I PP GKTTL+R++ R ++D V +VD +EIGG VP + +G R
Sbjct: 199 LIISPPRCGKTTLLRDLIRQISDGTASFPGVTVGVVDERSEIGGSYLGVPQNDLGI--RT 256
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + M+ + P I +DEIG + A ++ G +L+ T HG +I+++
Sbjct: 257 DVLDCCPKAEGMMMLIRAMSPRVIAVDEIGDYRDIRAIESVIHCGCRLLATVHGDSIEDV 316
Query: 336 VKNPSLQILV 345
+ P LQ LV
Sbjct: 317 QRRPLLQKLV 326
>gi|333897006|ref|YP_004470880.1| stage III sporulation protein AA [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112271|gb|AEF17208.1| stage III sporulation protein AA [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 334
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 13/159 (8%)
Query: 190 MQVIGLTCRVGRAVAGSAEIICDLV----EGGGSILVIGPPGVGKTTLIREIARMLADD- 244
+ V GL R+ R GS++ I + E + L+I PP GKTTLIR+IAR +++
Sbjct: 126 VNVSGLNYRIMRQCIGSSDEIMRYIVKYPEVVNNTLIISPPQCGKTTLIRDIARNISNGM 185
Query: 245 -----HMKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPET 298
H ++V IVD +EI +P + +G R V ++ +H ++ + + P+
Sbjct: 186 PELNFHGEKVSIVDERSEIAACFKGIPQNDVG--YRTDVLDLCPKHIGILMMIRSMSPKV 243
Query: 299 IIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
II DEIG + + GV ++ T HG ++++ +
Sbjct: 244 IITDEIGKVEDIASIHEALNAGVSIITTVHGNDVEDVAR 282
>gi|134298920|ref|YP_001112416.1| hypothetical protein Dred_1056 [Desulfotomaculum reducens MI-1]
gi|134051620|gb|ABO49591.1| conserved hypothetical protein [Desulfotomaculum reducens MI-1]
Length = 337
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 14/173 (8%)
Query: 183 SAIRNRKMQVIGLTCRVGRAVAGSAE-IICDLVEGGGSI---LVIGPPGVGKTTLIREIA 238
IRN K + G R+ RAV G A+ ++ L+ G +++ PP GKTT++REI
Sbjct: 130 GGIRNIKY-ISGFNFRISRAVVGVADKVLPYLISSDGRFYHTILVSPPRCGKTTMLREII 188
Query: 239 RMLADDHMK------RVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAV 291
R L++ + V +VD +EI G VP IG R V + + M+ +
Sbjct: 189 RRLSEGVPELGFSGVTVGVVDERSEIAGCYRGVPQRDIGP--RTDVLDACPKAPGMMMLL 246
Query: 292 ENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
+ P I DEIG + + A + GV+++ T HG T++ + P+LQ L
Sbjct: 247 RSMGPMIIATDEIGRQEDVAALEEVLNAGVKVLSTVHGATLEELADRPALQYL 299
>gi|402776705|ref|YP_006630649.1| ATP-binding stage III sporulation protein [Bacillus subtilis QB928]
gi|402481885|gb|AFQ58394.1| ATP-binding stage III sporulation protein [Bacillus subtilis QB928]
Length = 308
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 18/162 (11%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++AR+ + + IVD +EI G +P G+ R+
Sbjct: 141 LIIGPPQTGKTTLLRDLARLSSTGKKNMLPVKTGIVDERSEIAGCLRGIPQHQFGQ--RI 198
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + ++ + + PE +I+DEIG + A GV ++ +AHG +I ++
Sbjct: 199 DVLDACPKAEGLMMMIRSMSPEVMIVDEIGRMEDTDALLEALHAGVSVIVSAHGWSISDL 258
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFT 377
+K PSL+ L +E A R ++ + KGP T +
Sbjct: 259 MKRPSLK---------RLWEERAFDRYLELS--RAKGPGTVS 289
>gi|407959688|dbj|BAM52928.1| ATP-binding stage III sporulation protein [Bacillus subtilis
BEST7613]
gi|407965263|dbj|BAM58502.1| ATP-binding stage III sporulation protein [Bacillus subtilis
BEST7003]
Length = 307
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 18/162 (11%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++AR+ + + IVD +EI G +P G+ R+
Sbjct: 140 LIIGPPQTGKTTLLRDLARLSSTGKKNMLPVKTGIVDERSEIAGCLRGIPQHQFGQ--RI 197
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + ++ + + PE +I+DEIG + A GV ++ +AHG +I ++
Sbjct: 198 DVLDACPKAEGLMMMIRSMSPEVMIVDEIGRMEDTDALLEALHAGVSVIVSAHGWSISDL 257
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFT 377
+K PSL+ L +E A R ++ + KGP T +
Sbjct: 258 MKRPSLK---------RLWEERAFDRYLELS--RAKGPGTVS 288
>gi|384176064|ref|YP_005557449.1| stage III sporulation protein AA [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349595288|gb|AEP91475.1| stage III sporulation protein AA [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 307
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++AR+ + + IVD +EI G +P G+ R+
Sbjct: 140 LIIGPPQTGKTTLLRDLARLSSTGKKSMLPVKTGIVDERSEIAGCLRGIPQHQFGQ--RI 197
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + ++ + + PE +I+DEIG + A GV ++ +AHG +I ++
Sbjct: 198 DVLDACPKAEGLMMMIRSMSPEVMIVDEIGRMEDTDALLEALHAGVSVIVSAHGWSISDL 257
Query: 336 VKNPSLQIL 344
+K PSL+ L
Sbjct: 258 MKRPSLKRL 266
>gi|16079499|ref|NP_390323.1| ATP-binding stage III sporulation protein [Bacillus subtilis subsp.
subtilis str. 168]
gi|221310366|ref|ZP_03592213.1| mutants block sporulation after engulfment (stage III sporulation)
[Bacillus subtilis subsp. subtilis str. 168]
gi|221314690|ref|ZP_03596495.1| mutants block sporulation after engulfment (stage III sporulation)
[Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221319613|ref|ZP_03600907.1| mutants block sporulation after engulfment (stage III sporulation)
[Bacillus subtilis subsp. subtilis str. JH642]
gi|221323889|ref|ZP_03605183.1| mutants block sporulation after engulfment (stage III sporulation)
[Bacillus subtilis subsp. subtilis str. SMY]
gi|418032384|ref|ZP_12670867.1| mutants block sporulation after engulfment (stage III sporulation)
[Bacillus subtilis subsp. subtilis str. SC-8]
gi|449094940|ref|YP_007427431.1| ATP-binding stage III sporulation protein [Bacillus subtilis XF-1]
gi|452915262|ref|ZP_21963888.1| stage III sporulation protein AA [Bacillus subtilis MB73/2]
gi|730774|sp|Q01367.1|SP3AA_BACSU RecName: Full=Stage III sporulation protein AA
gi|581722|emb|CAA43959.1| SpoIIIAA protein [Bacillus subtilis subsp. subtilis str. 168]
gi|1000359|gb|AAA76720.1| SpoIIIAA [Bacillus subtilis subsp. subtilis str. JH642]
gi|1303904|dbj|BAA12560.1| SpoIIIAA [Bacillus subtilis]
gi|2634877|emb|CAB14374.1| ATP-binding stage III sporulation protein [Bacillus subtilis subsp.
subtilis str. 168]
gi|351471247|gb|EHA31368.1| mutants block sporulation after engulfment (stage III sporulation)
[Bacillus subtilis subsp. subtilis str. SC-8]
gi|449028855|gb|AGE64094.1| ATP-binding stage III sporulation protein [Bacillus subtilis XF-1]
gi|452115610|gb|EME06006.1| stage III sporulation protein AA [Bacillus subtilis MB73/2]
Length = 307
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++AR+ + + IVD +EI G +P G+ R+
Sbjct: 140 LIIGPPQTGKTTLLRDLARLSSTGKKNMLPVKTGIVDERSEIAGCLRGIPQHQFGQ--RI 197
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + ++ + + PE +I+DEIG + A GV ++ +AHG +I ++
Sbjct: 198 DVLDACPKAEGLMMMIRSMSPEVMIVDEIGRMEDTDALLEALHAGVSVIVSAHGWSISDL 257
Query: 336 VKNPSLQIL 344
+K PSL+ L
Sbjct: 258 MKRPSLKRL 266
>gi|428279930|ref|YP_005561665.1| stage III sporulation protein AA [Bacillus subtilis subsp. natto
BEST195]
gi|291484887|dbj|BAI85962.1| stage III sporulation protein AA [Bacillus subtilis subsp. natto
BEST195]
Length = 307
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 18/162 (11%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++AR+ + + IVD +EI G +P G+ R+
Sbjct: 140 LIIGPPQTGKTTLLRDLARLSSTGKKNMLPVKTGIVDERSEIAGCLRGIPQHQFGQ--RI 197
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + ++ + + PE +I+DEIG + A GV ++ +AHG +I ++
Sbjct: 198 DVLDACPKAEGLMMMIRSMSPEVMIVDEIGRMEDTDALLEALHAGVSVIVSAHGWSISDL 257
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFT 377
+K PSL+ L +E A R ++ + KGP T +
Sbjct: 258 MKRPSLK---------RLWEERAFDRYLELS--RAKGPGTVS 288
>gi|443631736|ref|ZP_21115916.1| stage III sporulation protein AA [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443347851|gb|ELS61908.1| stage III sporulation protein AA [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 305
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 18/162 (11%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++AR+ + + IVD +EI G +P G+ R+
Sbjct: 140 LIIGPPQTGKTTLLRDLARLSSTGKNLMLPVKTGIVDERSEIAGCLRGIPQHQFGQ--RI 197
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + ++ + + PE II+DEIG + A GV ++ +AHG +I ++
Sbjct: 198 DVLDACPKAEGLMMMIRSMSPEVIIVDEIGRVEDTDALLEALHAGVSVIVSAHGWSISDL 257
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFT 377
+K PSL+ L +E A R ++ + KGP T +
Sbjct: 258 MKRPSLK---------RLWEERAFDRYLELS--RAKGPGTVS 288
>gi|159488481|ref|XP_001702238.1| hypothetical protein CHLREDRAFT_154234 [Chlamydomonas reinhardtii]
gi|158271275|gb|EDO97098.1| predicted protein [Chlamydomonas reinhardtii]
Length = 205
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 309 EALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTL-GDEEAKKRKVQKTI 367
EA AA +I+QRGV LV TAHG + +I+ NP L LVGG+++V L KT
Sbjct: 2 EAEAARSISQRGVMLVATAHGTDLRSIMGNPDLNSLVGGMQTVILGDAAAGAAHGGAKTR 61
Query: 368 LERKGPPTFTCAVEMISRTECRVHHRLDATVDAILAG 404
ER+G PTF R+ + A+VDA+L G
Sbjct: 62 TERRGEPTF----------RLRLRPDVAASVDALLGG 88
>gi|239627516|ref|ZP_04670547.1| stage III sporulation protein AA [Clostridiales bacterium
1_7_47_FAA]
gi|239517662|gb|EEQ57528.1| stage III sporulation protein AA [Clostridiales bacterium
1_7_47FAA]
Length = 332
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 16/181 (8%)
Query: 198 RVGRAVAGSAEIICDLVEGGGSI--LVIGPPGVGKTTLIREIARMLADDHMKR------- 248
RV V G A+ + D + G + LVI PP GKTTL+R+I R ++D +
Sbjct: 134 RVAHQVPGCADGVMDFLYDGRFLNTLVISPPRCGKTTLLRDIIRQVSDGWVGHSGDRVPG 193
Query: 249 --VVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
V +VD +E+ VP + +G R V + + M+ V P I +DEIG
Sbjct: 194 VSVGVVDERSELAACYQGVPQNDLGM--RTDVLDCCPKSQGMMMLVRTMAPGVIAVDEIG 251
Query: 306 TELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV--GGIESVTLGDEEAKKRKV 363
+ +A A + G L T HG ++++I + PS+ L+ G E + L D V
Sbjct: 252 SRQDAEAIEYVRNCGCALAATIHGSSLEDIRQKPSMGGLLAQGTFERLILLDSREGPGHV 311
Query: 364 Q 364
Q
Sbjct: 312 Q 312
>gi|344995705|ref|YP_004798048.1| AAA ATPase [Caldicellulosiruptor lactoaceticus 6A]
gi|343963924|gb|AEM73071.1| AAA ATPase [Caldicellulosiruptor lactoaceticus 6A]
Length = 313
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 124/277 (44%), Gaps = 50/277 (18%)
Query: 97 ADIELELFLELLPSRMRR--ELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKH 154
+ E+E ++ LP+ + ++ + L ++ E+ ++L PL ++V I+
Sbjct: 6 VNTEVEKLIDKLPAEIVYTIKMAFEKRLHEICEIKINL-NCPLIVIGKREYVFDSLIITK 64
Query: 155 EDLKHAISKV--------------GDFSDDNRSGIDRSLHRISA-----IRNRKMQ---- 191
E L IS++ G F+ D HRI N Q
Sbjct: 65 EILNKCISRLTNNSLFTYEKNILQGYFTVDGG-------HRIGVAGKFTFENENKQGFVS 117
Query: 192 -VIGLTCRVGRAVAGSAE-----IICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDH 245
+ GL RV +AV E I+ + ++ + L+I PPG GKTTL+R I R+L+
Sbjct: 118 SISGLNIRVSKAVRIEPEKILKNIVKENLDSIYNTLIISPPGCGKTTLLRNIIRILSSGE 177
Query: 246 ------MKRVVIVDTSNEIGG-DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPET 298
RVV++D +EI D D GI R + V+ +++ AV + P+
Sbjct: 178 GILAGRGFRVVVIDERSEICAVDNDRREIGI---RTFVLDGVDKLRGILM-AVRSLNPQI 233
Query: 299 IIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
I +DE+G+ + LA ++ GV+++ T H ++ +I
Sbjct: 234 IAMDELGSPSDYLAVCEASKMGVKIIATMHAESVKDI 270
>gi|430759091|ref|YP_007209015.1| Stage III sporulation protein AA [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430023611|gb|AGA24217.1| Stage III sporulation protein AA [Bacillus subtilis subsp. subtilis
str. BSP1]
Length = 307
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++AR+ + + IVD +EI G +P G+ R+
Sbjct: 140 LIIGPPQTGKTTLLRDLARLSSTGKKPMLPVKTGIVDERSEIAGCLRGIPQHQFGQ--RI 197
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + ++ + + PE +I+DEIG + A GV ++ +AHG +I ++
Sbjct: 198 DVLDACPKAEGLMMMIRSMSPEVMIVDEIGRMEDTDALLEALHAGVSVIVSAHGWSISDL 257
Query: 336 VKNPSLQIL 344
+K PSL+ L
Sbjct: 258 MKRPSLKRL 266
>gi|321311927|ref|YP_004204214.1| stage III sporulation protein AA [Bacillus subtilis BSn5]
gi|320018201|gb|ADV93187.1| stage III sporulation protein AA [Bacillus subtilis BSn5]
Length = 307
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++AR+ + + IVD +EI G +P G+ R+
Sbjct: 140 LIIGPPQTGKTTLLRDLARLSSTGKKPMLPVKTGIVDERSEIAGCLRGIPQHQFGQ--RI 197
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + ++ + + PE +I+DEIG + A GV ++ +AHG +I ++
Sbjct: 198 DVLDACPKAEGLMMMIRSMSPEVMIVDEIGRMEDTDALLEALHAGVSVIVSAHGWSISDL 257
Query: 336 VKNPSLQIL 344
+K PSL+ L
Sbjct: 258 MKRPSLKRL 266
>gi|332799361|ref|YP_004460860.1| stage III sporulation protein AA [Tepidanaerobacter acetatoxydans
Re1]
gi|438002504|ref|YP_007272247.1| Stage III sporulation protein AA [Tepidanaerobacter acetatoxydans
Re1]
gi|332697096|gb|AEE91553.1| stage III sporulation protein AA [Tepidanaerobacter acetatoxydans
Re1]
gi|432179298|emb|CCP26271.1| Stage III sporulation protein AA [Tepidanaerobacter acetatoxydans
Re1]
Length = 340
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 12/162 (7%)
Query: 194 GLTCRVGRAVAGSAEIICDLVEGGG---SILVIGPPGVGKTTLIREIARMLAD--DHMK- 247
G R+ R V G+A+ + + GG + L+I PP GKTTL+R+I R L+ D
Sbjct: 137 GFNIRIAREVIGAADKVLPFIINGGKALNTLIISPPKAGKTTLLRDIIRQLSSGVDEFGI 196
Query: 248 ---RVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
+ +VD +EI + +P + +G R V + + ++ + + P+ I DE
Sbjct: 197 KGFNIGLVDERSEIACCYEGIPQNDVGI--RTDVLDSCPKAKGIMLLLRSMSPDIIATDE 254
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
IG + +A GV ++ TAHG +D+I + P+++ L+
Sbjct: 255 IGRNEDVIAIEEAINTGVTIITTAHGSDLDDIRRRPTIRKLI 296
>gi|421860480|ref|ZP_16292604.1| uncharacterized protein conserved in bacteria [Paenibacillus
popilliae ATCC 14706]
gi|410829962|dbj|GAC43041.1| uncharacterized protein conserved in bacteria [Paenibacillus
popilliae ATCC 14706]
Length = 320
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 102/210 (48%), Gaps = 27/210 (12%)
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAG-SAEIICDLVEGGGS----ILVIGPPGVGKTTLIR 235
R+S +R ++ G R+ R V G +A ++ L++ + L++ PP GKTTL+R
Sbjct: 104 RVSHLR----EITGFNLRIAREVHGIAASVMPMLLDFKHAHIHHTLIVSPPQQGKTTLLR 159
Query: 236 EIARMLADDHMK---------RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHS 285
++ R + +V +VD +EI G VP +G R V + +
Sbjct: 160 DLVRAIGSGLWHHPEARWKALKVGVVDERSEIAGCIKGVPSYDLGY--RTDVLDGCPKAE 217
Query: 286 VMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
M+ + + P+ + +DE G E + LA S GV+L+ TAH +D++++ P L+ L+
Sbjct: 218 GMMMFIRSMSPDVLAVDETGREEDLLAMSEAMHAGVRLIATAHAEDMDDLLRRPGLRQLL 277
Query: 346 --GGIES-VTLGDEEAKKRKVQKTILERKG 372
G VTL KR+ Q+ + + +G
Sbjct: 278 EEGAFRRIVTL---RRAKREWQRKVYDEQG 304
>gi|51893000|ref|YP_075691.1| stage III sporulation protein AA [Symbiobacterium thermophilum IAM
14863]
gi|51856689|dbj|BAD40847.1| stage III sporulation protein AA [Symbiobacterium thermophilum IAM
14863]
Length = 292
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 17/198 (8%)
Query: 171 NRSGI-DRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAE-IICDLVEGGG--SILVIGPP 226
+R G+ R++ IR K QV L R+ R V G+A+ ++ LV GG S L++ PP
Sbjct: 78 HRVGLCGRAVTEACRIRTLK-QVASLNVRIAREVPGAADGLLPHLVRGGRFLSTLLVSPP 136
Query: 227 GVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPN 279
GKTTL+R++ R L+ + +V +VD +E+ G VP +G R V +
Sbjct: 137 QAGKTTLLRDLVRQLSTGVPRLGLRGLKVGLVDERSEVAGCVCGVPQRDVGP--RTDVLD 194
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+ ++ + P+ + DEIG +A+A GV ++ TAHG + ++ + P
Sbjct: 195 GCPKAEGLMLMIRALSPQVVAADEIGRPEDAVAVMEALHAGVAVLATAHGAGLSDVRRRP 254
Query: 340 SLQILV--GGIE-SVTLG 354
+L L+ G E +V LG
Sbjct: 255 ALAELLRAGAFERAVVLG 272
>gi|312127950|ref|YP_003992824.1| aaa atpase [Caldicellulosiruptor hydrothermalis 108]
gi|311777969|gb|ADQ07455.1| AAA ATPase [Caldicellulosiruptor hydrothermalis 108]
Length = 313
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 127/270 (47%), Gaps = 36/270 (13%)
Query: 97 ADIELELFLELLPSRMRR--ELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKH 154
+ E+E L LP+ + ++ + L ++ E+ ++L PL ++V I+
Sbjct: 6 VNTEVEKLLGKLPAEIVYTIKMAFEKSLHEICEIKINL-NCPLIVIGKREYVFDSLIITK 64
Query: 155 EDLKHAISKV--------------GDFSDD--NRSGIDRSLHRISAIRNRKMQVI-GLTC 197
E L IS++ G F+ D +R G+ + + + I GL
Sbjct: 65 EILNKCISRLTNNSLFTYEKNILQGYFTVDGGHRIGVAGKFTFENGSKQGFVSSISGLNI 124
Query: 198 RVGRAVAGSAE-IICDLV-EGGGSI---LVIGPPGVGKTTLIREIARMLADDH------M 246
RV +AV E I+ ++V E SI L+I PPG GKTTL+R I R+L+
Sbjct: 125 RVSKAVRIEPEKILKNIVKENLNSIYNTLIISPPGCGKTTLLRNIIRILSSGEGILAGRG 184
Query: 247 KRVVIVDTSNEIGG-DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
RVV++D +EI D D GI R + V+ +++ AV + P+ I +DE+G
Sbjct: 185 FRVVVIDERSEICAVDNDRREIGI---RTFVLDGVDKLRGILM-AVRSLNPQIIAMDELG 240
Query: 306 TELEALAASTIAQRGVQLVGTAHGMTIDNI 335
+ + LA ++ GV+++ T H ++ +I
Sbjct: 241 SPSDYLAVCEASKMGVKIIATMHAESVKDI 270
>gi|153810487|ref|ZP_01963155.1| hypothetical protein RUMOBE_00868 [Ruminococcus obeum ATCC 29174]
gi|149833666|gb|EDM88747.1| stage III sporulation protein AA [Ruminococcus obeum ATCC 29174]
Length = 251
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 11/166 (6%)
Query: 188 RKMQVIG-LTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLAD 243
R M+ I + R+ V G A+ + + G + L+I PP GKTTL+R++ R +++
Sbjct: 56 RGMKYISCINVRLAHQVQGCADEVLPYIRNGEQVYHTLIIAPPRCGKTTLLRDMIRQISN 115
Query: 244 D----HMKRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPET 298
K V +VD +E+ G +P + +G R V + + M + + P+
Sbjct: 116 GTDRIQGKTVGVVDERSELAGCYQGIPQNDLGM--RTDVLDACPKAKGMQMLLRSMSPDV 173
Query: 299 IIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
+ +DE+G + + A ++ G +L TAHG ++++I++ P Q L
Sbjct: 174 VAVDELGKKEDFKAVESVVHCGCKLFATAHGNSLEDILRQPFFQKL 219
>gi|154502445|ref|ZP_02039505.1| hypothetical protein RUMGNA_00258 [Ruminococcus gnavus ATCC 29149]
gi|336434239|ref|ZP_08614039.1| stage III sporulation protein AA [Lachnospiraceae bacterium
2_1_58FAA]
gi|153796841|gb|EDN79261.1| stage III sporulation protein AA [Ruminococcus gnavus ATCC 29149]
gi|336014282|gb|EGN44138.1| stage III sporulation protein AA [Lachnospiraceae bacterium
2_1_58FAA]
Length = 313
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 221 LVIGPPGVGKTTLIREIARMLADD--HMK--RVVIVDTSNEIGGDGDVPHSGIGR---AR 273
LVI PP GKTTLIR++ R ++D H+K V +VD +EIGG + G+ +
Sbjct: 152 LVISPPCGGKTTLIRDLIRQISDGNAHVKGCTVGVVDERSEIGG----CYLGVAQNHLGS 207
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R + + + MI + + P + +DEIG + E A Q G +L+ + HG ++
Sbjct: 208 RTDILDCCPKAEGMIMLIRSMSPRVLAVDEIGAQEEIRAVEYAMQCGCKLIASVHGNSMA 267
Query: 334 NIVKNPSLQILV 345
I P L LV
Sbjct: 268 EIASKPGLGELV 279
>gi|153816458|ref|ZP_01969126.1| hypothetical protein RUMTOR_02711 [Ruminococcus torques ATCC 27756]
gi|317500219|ref|ZP_07958450.1| stage III sporulation protein AA [Lachnospiraceae bacterium
8_1_57FAA]
gi|331087553|ref|ZP_08336484.1| stage III sporulation protein AA [Lachnospiraceae bacterium
3_1_46FAA]
gi|145846200|gb|EDK23118.1| stage III sporulation protein AA [Ruminococcus torques ATCC 27756]
gi|316898390|gb|EFV20430.1| stage III sporulation protein AA [Lachnospiraceae bacterium
8_1_57FAA]
gi|330400693|gb|EGG80297.1| stage III sporulation protein AA [Lachnospiraceae bacterium
3_1_46FAA]
Length = 313
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 115/253 (45%), Gaps = 36/253 (14%)
Query: 120 RELGDLIEVVMDLGRKPLARFPSGDWVI-----SEQIVKHEDLKHAISKVGDFS-----D 169
RE G L E+ M +G +PL G+ I IV E++K I + +S +
Sbjct: 28 REGGALQEIRMRIG-QPLTVMIDGEEQILPLKERAHIVTKEEIKETIEYMSRYSLYAYEN 86
Query: 170 DNRSGID--RSLHRISAI--------RNRKMQVIG-LTCRVGRAVAGSAEIICDLVEGGG 218
+ R G HR+ + + +Q I L R+ V G A+ + +
Sbjct: 87 ELRQGFLTLEGGHRVGVAGKVIVDRGKVKNIQYISSLNIRIAHEVIGCADELIPYITKNK 146
Query: 219 SI---LVIGPPGVGKTTLIREIARMLAD--DHMK--RVVIVDTSNEIGGDGDVPHSGIGR 271
+ L+I PP GKTTL+R++ R ++D +++K V +VD +EIGG + GI +
Sbjct: 147 KVCHTLIISPPRCGKTTLLRDLIRQISDGNEYVKGCSVGVVDERSEIGG----CYMGIVQ 202
Query: 272 ---ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAH 328
R V + + MI + + P+ + +DEIGT + A Q G +L+ + H
Sbjct: 203 NNLGMRTDVLDCCPKAEGMIMLIRSMSPQVVAVDEIGTAEDIHAIEYAMQCGCKLIASVH 262
Query: 329 GMTIDNIVKNPSL 341
GM ++ + P L
Sbjct: 263 GMDMEEAARKPVL 275
>gi|56420943|ref|YP_148261.1| stage III sporulation protein AA [Geobacillus kaustophilus HTA426]
gi|375009488|ref|YP_004983121.1| stage III sporulation protein AA [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|448238686|ref|YP_007402744.1| stage III sporulation protein [Geobacillus sp. GHH01]
gi|56380785|dbj|BAD76693.1| stage III sporulation protein AA [Geobacillus kaustophilus HTA426]
gi|359288337|gb|AEV20021.1| Stage III sporulation protein AA [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|445207528|gb|AGE22993.1| stage III sporulation protein [Geobacillus sp. GHH01]
Length = 306
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGG--SILVIGPPGVGKTTLIREIA 238
++ AIR+ V R+ + G AE + V G ++IG P GKTTL+R+ A
Sbjct: 102 KVKAIRD----VSSFNIRIAKEQIGIAEPLIPYVYDGRWRHTMIIGSPQTGKTTLLRDAA 157
Query: 239 RMLADDH----MKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293
R+++ ++V IVD +EI G +P G R+ V + + M+ + +
Sbjct: 158 RLISSGTRRIPAQKVAIVDERSEIAGCVKGIPQFSFGP--RLDVLDACPKAEGMMMMIRS 215
Query: 294 HMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSL 341
P+ +I+DEIG E ++ A A GV + T HG I ++ + P+L
Sbjct: 216 MSPDVMIVDEIGREEDSEAVLEAANAGVSVWTTVHGRNIQDVWQRPTL 263
>gi|291550239|emb|CBL26501.1| stage III sporulation protein AA [Ruminococcus torques L2-14]
Length = 314
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 23/185 (12%)
Query: 180 HRISA-----IRNRKMQVI----GLTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPG 227
HR+ I N K++ I L R+ V G A+ + + I L+I PP
Sbjct: 100 HRVGVAGKVIIENEKVKNIQYISSLNVRISHEVLGCADALIPYITENKQICHTLIISPPC 159
Query: 228 VGKTTLIREIARMLAD--DHMK--RVVIVDTSNEIGGDGDVPHSGIGR---ARRMQVPNV 280
GKTTLIR++ R ++D +++K V +VD +E+GG + GI + R + +
Sbjct: 160 CGKTTLIRDLIRQISDGNEYIKGCSVGVVDERSELGG----CYLGIAQNHLGTRTDILDC 215
Query: 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPS 340
+ MI + + P I +DEIGT + A Q G +L+ + H + +D K P
Sbjct: 216 CPKAEGMIMLIRSMAPRVIAVDEIGTSEDIHAIEYAMQCGCRLIASVHSLDMDEASKKPI 275
Query: 341 LQILV 345
L L+
Sbjct: 276 LGDLI 280
>gi|302392502|ref|YP_003828322.1| stage III sporulation protein AA [Acetohalobium arabaticum DSM
5501]
gi|302204579|gb|ADL13257.1| stage III sporulation protein AA [Acetohalobium arabaticum DSM
5501]
Length = 330
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 31/203 (15%)
Query: 159 HAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSA-EIICDLVEGG 217
H + VG D L I I+N GL R+ + + G+A E+I +++
Sbjct: 105 HRVGFVGQVVSD--------LDEIELIKNFS----GLNIRISQEIIGAADEVIGEVISND 152
Query: 218 GS-----ILVIGPPGVGKTTLIREIARMLA------DDHMKRVVIVDTSNEIGG--DGDV 264
S L+I PP GKTTL+R++ R L+ + +V +VD E+GG G V
Sbjct: 153 QSQSIYNTLIISPPQCGKTTLLRDLIRQLSTGLPEQNFSGLKVGVVDERGELGGSYQGVV 212
Query: 265 PHS-GIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQL 323
+ GI P + MI + PE I+ DEIG+ + A GV++
Sbjct: 213 QNQLGIRTDLLANCP----KSQGMILLIRAMSPEVIVTDEIGSRQDVQAICEAVNAGVKI 268
Query: 324 VGTAHGMTIDNIVKNPSLQILVG 346
V + HG + I + P+L+ L+G
Sbjct: 269 VTSVHGRDLKEIKQRPNLEKLLG 291
>gi|410460620|ref|ZP_11314295.1| stage III sporulation protein AA [Bacillus azotoformans LMG 9581]
gi|409926878|gb|EKN64030.1| stage III sporulation protein AA [Bacillus azotoformans LMG 9581]
Length = 312
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 126/271 (46%), Gaps = 29/271 (10%)
Query: 102 ELFLELLPSRMRRELCMHR-ELGDLIEVVMDLGRKPLARFPSGD-WVISEQIVKHEDLKH 159
E+ E+LP+ + +C + + + IE + +PL G+ + + IV +D
Sbjct: 3 EVIFEMLPTTIVERICQYSGSVQNRIEEIRIRLERPLELVIDGEPFYPNGYIVTKQDGLT 62
Query: 160 AISKVGDFS-----DDNRSGID--RSLHRIS---AIRNRKMQVIGL------TCRVGRAV 203
++K+ D+S ++ + G R HR+ + K QV + R+ +
Sbjct: 63 LLNKLSDYSIYTLEEELKRGFITIRGGHRVGLAGKVITEKGQVKAIKDITSYNIRIAKEK 122
Query: 204 AGSAEIICDLVEGGGSI--LVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTS 255
G A+ + + G + ++ GPP GKTTL+R++ARM++ +V IVD
Sbjct: 123 VGIADPLTPYLYRGRWLNTIIYGPPQTGKTTLLRDMARMMSTGSYDSNIPSFKVGIVDER 182
Query: 256 NEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAS 314
+EI G +P G R+ V + + M+ + + P+ +++DEIG + A
Sbjct: 183 SEIAGCVKGIPQHQFGP--RIDVLDACPKAEGMMMLIRSMSPDILVVDEIGRMEDTEAIL 240
Query: 315 TIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
GV L + HG +++++ K PS++ L+
Sbjct: 241 EAVNAGVALFISVHGSSMEDLYKRPSIKPLM 271
>gi|28211253|ref|NP_782197.1| stage III sporulation protein AA [Clostridium tetani E88]
gi|28203693|gb|AAO36134.1| stage III sporulation protein AA [Clostridium tetani E88]
Length = 303
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 127/273 (46%), Gaps = 33/273 (12%)
Query: 104 FLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK 163
LE+LPS ++++L +L E+ + +KP+ ++++ I E++ + +
Sbjct: 7 ILEILPSEIKKQL-NALNFKNLQEIRIR-SQKPIIVKDGACEIVTDYIATLEEVGSIVKR 64
Query: 164 VGDFS-----DDNRSGID--RSLHRI-----SAIRNRKMQVI----GLTCRVGRAVAGSA 207
+ +S D+ + G HR+ + K++ I L R+ R VAG +
Sbjct: 65 MSSYSIYAYDDEIKQGYITINGGHRVGICGKCVVEGEKVKTIKYPASLNIRICREVAGCS 124
Query: 208 EIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEI 258
+ I + + ++I PP GKTTL+R+IA+ L++ K +V ++D +EI
Sbjct: 125 DKILPYILKSSMVENTIIISPPNCGKTTLLRDIAKKLSNGISKLDLKGMKVCVIDERSEI 184
Query: 259 GGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIA 317
VP +G R V + + ++ A+ + P+ I+ DEIG+ + +
Sbjct: 185 ASCVNGVPQLNLG--LRTDVLDSCPKSQGIMMAIRSMSPDVIVCDEIGSTEDIESIIKAM 242
Query: 318 QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIES 350
GV+L+ T HG + +I + ++ G IE+
Sbjct: 243 NSGVKLITTVHGYDVKDIYER---EVFKGAIEN 272
>gi|261417733|ref|YP_003251415.1| stage III sporulation protein AA [Geobacillus sp. Y412MC61]
gi|319767455|ref|YP_004132956.1| stage III sporulation protein AA [Geobacillus sp. Y412MC52]
gi|261374190|gb|ACX76933.1| stage III sporulation protein AA [Geobacillus sp. Y412MC61]
gi|317112321|gb|ADU94813.1| stage III sporulation protein AA [Geobacillus sp. Y412MC52]
Length = 306
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGG--SILVIGPPGVGKTTLIREIA 238
++ AIR+ V R+ + G AE + V G ++IG P GKTTL+R+ A
Sbjct: 102 KVKAIRD----VSSFNIRIAKEQIGIAEPLIPYVYDGRWRHTMIIGSPQTGKTTLLRDAA 157
Query: 239 RMLADDH----MKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293
R+++ ++V IVD +EI G +P G R+ V + + M+ + +
Sbjct: 158 RLISSGTGRIPAQKVAIVDERSEIAGCVKGIPQFSFGP--RLDVLDACPKAEGMMMMIRS 215
Query: 294 HMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSL 341
P+ +I+DEIG E ++ A A GV + T HG I ++ + P+L
Sbjct: 216 MSPDVMIVDEIGREEDSEAVLEAANAGVSVWTTVHGRNIQDVWQRPTL 263
>gi|366166835|ref|ZP_09466590.1| stage III sporulation protein AA [Acetivibrio cellulolyticus CD2]
Length = 340
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 29/212 (13%)
Query: 145 WVISEQIVKHEDLKHAISKVGDFSDDNRSGID--RSLHRI----------SAIRNRKMQV 192
V EQI+K +L + + F D+ R+G + HR+ + I+N + +
Sbjct: 81 LVTQEQIIKTLELISE-NSIYAFQDEIRNGFITLKGGHRVGITGRVVLEGTQIKNIR-DI 138
Query: 193 IGLTCRVGRAVAG-SAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADD---- 244
GL R+ R V G S++I+ +V+G + L++ PP GKTT++R++AR L+D
Sbjct: 139 SGLNMRISREVYGCSSKILRYIVQGDNDVYNTLIVSPPKCGKTTILRDLARNLSDGVDGF 198
Query: 245 --HMKRVVIVDTSNEIGGD-GDVPHSGIG-RARRMQVPNVNMQHSVMIEAVENHMPETII 300
+V +VD +EI P +G R + + S+M+ ++ P+ II
Sbjct: 199 AIRGLKVGVVDERSEIAACFKGSPQKEVGARTDVLDACPKQLGMSMMLRSMS---PDVII 255
Query: 301 IDEIGTELEALAASTIAQRGVQLVGTAHGMTI 332
DEIG + A + GV+++ TAHG I
Sbjct: 256 TDEIGCNGDKEALMQVLNAGVKIITTAHGFNI 287
>gi|403744996|ref|ZP_10954024.1| stage III sporulation protein AA [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121651|gb|EJY55928.1| stage III sporulation protein AA [Alicyclobacillus hesperidum
URH17-3-68]
Length = 347
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 106/241 (43%), Gaps = 39/241 (16%)
Query: 159 HAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGG 218
H I G D G RS+ IS+ L R+ RA G A + + G
Sbjct: 131 HRIGVAGRIVTDG--GHIRSIRSISS----------LNIRIARAHPGMATPLRPWLADRG 178
Query: 219 -----SILVIGPPGVGKTTLIREIARMLADDHMKR------VVIVDTSNEIGG--DGDVP 265
S LVI PP GKTTL+R+IAR +++ + R VVI+D +EI G +G P
Sbjct: 179 DGHPLSTLVISPPQCGKTTLVRDIARQWSENLVTRRRSPSKVVIIDERSEIAGMFEGR-P 237
Query: 266 HSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVG 325
+G R V + + ++ A+ + P+ ++ DEIG + A A GV ++
Sbjct: 238 QFALG--PRTDVLDGCPKAEGLLMAIRSLSPDIVVTDEIGKHGDVEAILEAANAGVAVIT 295
Query: 326 TAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISR 385
TAH ++ + + P ++ L A R + + R+GP T C ++ R
Sbjct: 296 TAHASSLASWRRRPHMEELF---------QAHAFARYI--ILSRRRGPGTIECVLDGDGR 344
Query: 386 T 386
+
Sbjct: 345 S 345
>gi|225570621|ref|ZP_03779646.1| hypothetical protein CLOHYLEM_06723 [Clostridium hylemonae DSM
15053]
gi|225160634|gb|EEG73253.1| hypothetical protein CLOHYLEM_06723 [Clostridium hylemonae DSM
15053]
Length = 316
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 123/274 (44%), Gaps = 36/274 (13%)
Query: 104 FLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISE------QIVKHEDL 157
L++LP ++RR + + D ++ + KPL GD +I+ I+ ED+
Sbjct: 6 ILKVLPVKVRRLIEEEQLQYDYLQEIRLRTGKPLLMIYRGDELITGPGRGGPYIITKEDI 65
Query: 158 KHAISKVGDFS-----DDNRSGID--RSLHRI-----SAIRNRKMQVI----GLTCRVGR 201
+ + + ++S + + G HR+ + I + K++ I + R+
Sbjct: 66 REMVGYISNYSLYAYEQEMKQGFITIEGGHRVGMTGQAIIEDGKVKNIKYISSVNLRIAH 125
Query: 202 AVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHM----KRVVIVDT 254
V G A+ I V + L+I PP GKTTL+R++ R ++D + V +VD
Sbjct: 126 EVLGCADEIFPYVALNRKLCHTLIISPPRCGKTTLLRDMIRQISDGNAWVKGMSVGVVDE 185
Query: 255 SNEIGGDGDVPHSGIGR---ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEAL 311
+EIGG + G+ + R V + + MI + + PE + +DEIG +
Sbjct: 186 RSEIGG----CYMGVAQNHLGMRTDVLDCCPKAEGMIMLIRSMSPEVVAVDEIGAAEDVH 241
Query: 312 AASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
A G +L+ + HG +++ I K P L LV
Sbjct: 242 AVEYAMHCGCKLLASIHGASMEEIRKKPLLGRLV 275
>gi|220931461|ref|YP_002508369.1| Sporulation stage III protein AA [Halothermothrix orenii H 168]
gi|219992771|gb|ACL69374.1| Sporulation stage III protein AA [Halothermothrix orenii H 168]
Length = 316
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 9/128 (7%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGGDGD-VPHSGIGRAR 273
+++ PP GKTTL+R+I R++++ K +V +VD +EIGG + +P + IG +R
Sbjct: 155 MIVSPPLCGKTTLLRDIVRLISNGIKKYGIPGKKVGVVDERSEIGGAYNGIPGNRIG-SR 213
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
+ N + + V + PE I +DEIG E + +A GV L+ TAHG +
Sbjct: 214 TDLLDNCPKAKGISL-LVRSMSPEVIAVDEIGNEEDVIAIQEATNSGVSLIATAHGENLT 272
Query: 334 NIVKNPSL 341
+ P++
Sbjct: 273 TLKMRPAM 280
>gi|197301796|ref|ZP_03166866.1| hypothetical protein RUMLAC_00522 [Ruminococcus lactaris ATCC
29176]
gi|197299236|gb|EDY33766.1| stage III sporulation protein AA [Ruminococcus lactaris ATCC 29176]
Length = 313
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 15/171 (8%)
Query: 186 RNRKMQVIG-LTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARML 241
R + +Q I L RV V G A+ + + + L+I PP GKTTLIR++ R +
Sbjct: 112 RVKNIQYISSLNIRVSHEVLGCADRLIPYIVANKQVCHTLIISPPCCGKTTLIRDLIRQI 171
Query: 242 AD--DHMK--RVVIVDTSNEIGGDGDVPHSGIGR---ARRMQVPNVNMQHSVMIEAVENH 294
+D +++K V +VD +E+GG + GI + R V + + MI + +
Sbjct: 172 SDGNEYVKGCSVGVVDERSELGG----CYLGIAQNHLGTRTDVLDCCPKAEGMIMLIRSM 227
Query: 295 MPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
P+ I +DEIGT + A Q G +++ + HG+ +D P L L+
Sbjct: 228 SPQVIAVDEIGTVEDIHAIEYAMQCGCRMIASVHGLNMDEASNKPVLGDLI 278
>gi|297529425|ref|YP_003670700.1| stage III sporulation protein AA [Geobacillus sp. C56-T3]
gi|297252677|gb|ADI26123.1| stage III sporulation protein AA [Geobacillus sp. C56-T3]
Length = 306
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 13/168 (7%)
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGG--SILVIGPPGVGKTTLIREIA 238
++ AIR+ V R+ + G AE + V G ++IG P GKTTL+R+ A
Sbjct: 102 KVKAIRD----VSSFNIRIAKEQIGIAEPLIPYVYDGRWRHTMIIGSPQTGKTTLLRDAA 157
Query: 239 RMLADDH----MKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293
R+++ ++V IVD +EI G +P G R+ V + + M+ +
Sbjct: 158 RLISSGTRRIPAQKVAIVDERSEIAGCVKGIPQFSFGP--RLDVLDACPKAEGMMMMIRA 215
Query: 294 HMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSL 341
P+ +I+DEIG E ++ A A GV + T HG I ++ + P+L
Sbjct: 216 MSPDVMIVDEIGREEDSEAVLEAANAGVSVWTTVHGRNIQDVWQRPTL 263
>gi|373115236|ref|ZP_09529412.1| stage III sporulation protein AA [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670528|gb|EHO35607.1| stage III sporulation protein AA [Lachnospiraceae bacterium
7_1_58FAA]
Length = 305
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 15/229 (6%)
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRS-LHRISAIRNRKMQVIGLTCRVGRAVAG 205
I+ Q H L+ + +R GI S + R +RN + Q+ L RV R V G
Sbjct: 76 IATQASAHTALERVRNGFFTVRGGHRIGICGSGVVRDGEVRNLR-QLSSLAIRVAREVPG 134
Query: 206 SAEIICDLVEGGG---SILVIGPPGVGKTTLIREIARMLADDH---MKRVVIVDTSNEIG 259
+ + D + GG S L++ PPG GKTTL+R++ R ++D RV + D E+
Sbjct: 135 LSAAVLDRLWSGGVLQSTLLLSPPGGGKTTLLRDLIRAVSDGEGGPALRVGVADERGELA 194
Query: 260 G--DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIA 317
G+ P IG R+ V + + ++ + P+ + DEI +A A A
Sbjct: 195 AMYQGE-PQFSIG--RQTDVLDGCPKGPALLMLLRGMNPQVLAADEITAPEDAAALEMAA 251
Query: 318 QRGVQLVGTAHGMTIDNIVKNPSLQILV--GGIESVTLGDEEAKKRKVQ 364
GV L+ TAH +++ + P + L+ G + + + ++R+ Q
Sbjct: 252 NCGVSLLCTAHAGSLEELKARPLYRRLLDEGLFRRLAIIERAGRERRYQ 300
>gi|365842271|ref|ZP_09383300.1| putative stage III sporulation protein AA [Flavonifractor plautii
ATCC 29863]
gi|364576112|gb|EHM53459.1| putative stage III sporulation protein AA [Flavonifractor plautii
ATCC 29863]
Length = 305
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 15/229 (6%)
Query: 147 ISEQIVKHEDLKHAISKVGDFSDDNRSGIDRS-LHRISAIRNRKMQVIGLTCRVGRAVAG 205
I+ Q H L+ + +R GI S + R +RN + Q+ L RV R V G
Sbjct: 76 IATQASAHTALERVRNGFFTVRGGHRIGICGSGVVRDGEVRNLR-QLSSLAIRVAREVPG 134
Query: 206 SAEIICDLVEGGG---SILVIGPPGVGKTTLIREIARMLADDH---MKRVVIVDTSNEIG 259
+ + D + GG S L++ PPG GKTTL+R++ R ++D RV + D E+
Sbjct: 135 LSAAVLDRLWSGGVLQSTLLLSPPGGGKTTLLRDLIRAVSDGEGGPALRVGVADERGELA 194
Query: 260 G--DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIA 317
G+ P IG R+ V + + ++ + P+ + DEI +A A A
Sbjct: 195 AMYQGE-PQFSIG--RQTDVLDGCPKGPALLMLLRGMNPQVLAADEITAPEDAAALEMAA 251
Query: 318 QRGVQLVGTAHGMTIDNIVKNPSLQILV--GGIESVTLGDEEAKKRKVQ 364
GV L+ TAH +++ + P + L+ G + + + ++R+ Q
Sbjct: 252 NCGVSLLCTAHAGSLEELKARPLYRRLLDEGLFRRLVIIERAGRERRYQ 300
>gi|311030965|ref|ZP_07709055.1| stage III sporulation protein AA [Bacillus sp. m3-13]
Length = 310
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 9/131 (6%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADD-HMKRVV-----IVDTSNEIGGD-GDVPHSGIGR 271
S +VIGPP GKTTL+R++AR+++ KRV IVD +EI G +P +G
Sbjct: 140 STMVIGPPQTGKTTLLRDLARIMSSGCEEKRVASCKVGIVDERSEIAGCVHGIPQHDLG- 198
Query: 272 ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331
+R+ V + + M+ + + P+ I++DEIG ++ A GV L+ + H +
Sbjct: 199 -QRVDVLDSCPKAEGMMMMIRSMSPDVIVVDEIGRMEDSEAVMEAVNAGVGLLMSVHAFS 257
Query: 332 IDNIVKNPSLQ 342
D + PSL+
Sbjct: 258 FDELKSRPSLR 268
>gi|218132216|ref|ZP_03461020.1| hypothetical protein BACPEC_00073 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992875|gb|EEC58875.1| stage III sporulation protein AA [[Bacteroides] pectinophilus ATCC
43243]
Length = 299
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 118/266 (44%), Gaps = 27/266 (10%)
Query: 106 ELLPSRMRRELCMHRELGD-LIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV 164
++LP +R + + D L EV + G + R+ + + ++ + IV ED++ A+ +
Sbjct: 11 KVLPQNVRSTILRQQISYDRLEEVHLRTGMPLILRYDNTEILMEQCIVTPEDMREALELI 70
Query: 165 GD-----FSDDNRSGIDR--SLHRIS-----AIRNRKMQVIG----LTCRVGRAVAGSAE 208
+ + DD R G HR+ +++ K++ I RV + G A
Sbjct: 71 SNHSLYAYEDDIRQGFITIPGGHRVGLAGKMVMQDGKIKTIKHISFFNIRVAHQIRGCAA 130
Query: 209 IICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHM----KRVVIVDTSNEIGGD 261
+ + I L+I PPG GKTT++R++ R +++ + + V +VD +EI
Sbjct: 131 SVYGFIHNSTQIENTLIISPPGCGKTTMLRDLIRQISNGNSYYEGQTVGVVDERSEIAAC 190
Query: 262 GD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRG 320
+ P + +G R V + + M+ V + P I +DEI T + A + G
Sbjct: 191 YNGRPQNDLG--IRTDVLDCCPKAEGMVMLVRSMSPRVIAVDEIATPDDIEAVRYVMNCG 248
Query: 321 VQLVGTAHGMTIDNIVKNPSLQILVG 346
++ TAH D + + P L+
Sbjct: 249 CSIIATAHAYNADELRQKPQFAELLA 274
>gi|296133231|ref|YP_003640478.1| stage III sporulation protein AA [Thermincola potens JR]
gi|296031809|gb|ADG82577.1| stage III sporulation protein AA [Thermincola potens JR]
Length = 325
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 9/132 (6%)
Query: 221 LVIGPPGVGKTTLIREIARMLADD------HMKRVVIVDTSNEIGGDG-DVPHSGIGRAR 273
L+I PP GKTTL+R+I R L++ H V +VD +EI G VP +G
Sbjct: 162 LIISPPRCGKTTLLRDIVRQLSNGVPSLGFHGVPVGVVDERSEIAGCFRGVPQKDVGI-- 219
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R V + + MI + + P+ + DEIG + + A + G++++ T HG +
Sbjct: 220 RTDVLDGCPKAEGMIMLIRSMAPKVVATDEIGRKEDIFALEEVLNAGIKILTTVHGANMS 279
Query: 334 NIVKNPSLQILV 345
+V+ P+L+ LV
Sbjct: 280 ELVQRPALKYLV 291
>gi|440781945|ref|ZP_20960173.1| stage III sporulation protein AA [Clostridium pasteurianum DSM 525]
gi|440220663|gb|ELP59870.1| stage III sporulation protein AA [Clostridium pasteurianum DSM 525]
Length = 305
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 123/263 (46%), Gaps = 29/263 (11%)
Query: 99 IELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLK 158
I ++ L++LP + + ++L L E+ + + R + + + + +I ED+
Sbjct: 2 INIKDILDVLPENIINIITKVKKLDKLQEIRLKINRPIILKLGEIEIIEEYKI-SVEDIN 60
Query: 159 HAISKVGDFS-----DDNRSGID--RSLHRI-----SAIRNRKMQVI----GLTCRVGRA 202
+ + ++ ++S D+ + G + HR+ + N +++I L R+ R
Sbjct: 61 NILKRMSNYSIYSIEDEIKQGYITIKGGHRVGICGNCIVENNIVKIIKNVSSLNIRICRE 120
Query: 203 VAGSAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLADDHM------KRVVIVD 253
V G ++ + + ++L +I PP GKTTLIR+I R ++ K V ++D
Sbjct: 121 VIGCSDKVMPWIVKDNNVLNTIIISPPNCGKTTLIRDITRNISSGSKNFGIRGKNVCVID 180
Query: 254 TSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALA 312
+EI D +P +G R + N +M+ A+ + P+ I+ DEIGT + +
Sbjct: 181 ERSEICASSDGIPQLNVG-IRTDVMDNCPKSQGIMM-AIRSMAPDVIVCDEIGTYEDVKS 238
Query: 313 ASTIAQRGVQLVGTAHGMTIDNI 335
+ G+ L+ T HG I+++
Sbjct: 239 ILSALNCGINLITTIHGFGIEDL 261
>gi|226311909|ref|YP_002771803.1| stage III sporulation protein AA [Brevibacillus brevis NBRC 100599]
gi|226094857|dbj|BAH43299.1| stage III sporulation protein AA [Brevibacillus brevis NBRC 100599]
Length = 320
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 10/162 (6%)
Query: 192 VIGLTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLAD----D 244
V R+ R G+A+++ + G + L+I PP GKTTL+R+IAR ++
Sbjct: 121 VTSFNIRIAREKKGAAKMVMSYLFEDGKLQNTLLISPPQCGKTTLLRDIARTISYGSECS 180
Query: 245 HMKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
++V IVD +E+ G VP +G R V + + M+ + + P+ +I+DE
Sbjct: 181 SSRKVGIVDERSELAGCLQGVPQRDVGP--RTDVLDACPKAVGMMMLIRSMSPDVLIVDE 238
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+G + A GV ++ +AHG ++ + + P L L+
Sbjct: 239 VGRAEDGDAVWEAIHAGVAVICSAHGASVKEVAERPMLGKLI 280
>gi|260588113|ref|ZP_05854026.1| stage III sporulation protein AA [Blautia hansenii DSM 20583]
gi|331082319|ref|ZP_08331445.1| stage III sporulation protein AA [Lachnospiraceae bacterium
6_1_63FAA]
gi|260541640|gb|EEX22209.1| stage III sporulation protein AA [Blautia hansenii DSM 20583]
gi|330400805|gb|EGG80406.1| stage III sporulation protein AA [Lachnospiraceae bacterium
6_1_63FAA]
Length = 323
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGDGD-VPHSGIGRARRM 275
L+I PP GKTTL+R++ R +++ + V +VD +EI G +P + +G R
Sbjct: 154 LIISPPRCGKTTLLRDLIRQVSNGNRYMPGVSVGVVDERSEIAGSYQGIPQNDLGI--RT 211
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + M+ + + PE + +DE+G + A ++ G +L T HG +I++I
Sbjct: 212 DVLDCCPKAEGMMMLIRSMSPEVVAVDELGDYEDIHAIESVIHCGCKLFATVHGSSIEDI 271
Query: 336 VKNPSLQILV 345
+ P LQ L+
Sbjct: 272 KRKPLLQRLM 281
>gi|225388160|ref|ZP_03757884.1| hypothetical protein CLOSTASPAR_01895 [Clostridium asparagiforme
DSM 15981]
gi|225045777|gb|EEG56023.1| hypothetical protein CLOSTASPAR_01895 [Clostridium asparagiforme
DSM 15981]
Length = 363
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHM----KRVVIVDTSNEIGGDGD-VPHSGIGRARRM 275
L+I PP GKTTL+R++ R ++ + V +VD +E+G VP + +G R
Sbjct: 175 LIISPPRCGKTTLLRDVIRQVSAGNAFAPGMTVGVVDERSELGACYQGVPQNDLGP--RT 232
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + M+ V + P+ + +DEIG+ + A I G L T HG ++++I
Sbjct: 233 DVLDCCPKDQGMMMLVRSMAPQVVAVDEIGSAGDVEAVGYIQSCGCALAATVHGASLEDI 292
Query: 336 VKNPSLQILV 345
P+L LV
Sbjct: 293 YSKPALGQLV 302
>gi|384456035|ref|YP_005668630.1| stage III sporulation protein AA [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|418015948|ref|ZP_12655513.1| stage 3 sporulation protein AA [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|345506283|gb|EGX28577.1| stage 3 sporulation protein AA [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984378|dbj|BAK80054.1| stage III sporulation protein AA [Candidatus Arthromitus sp.
SFB-mouse-Yit]
Length = 271
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 11/144 (7%)
Query: 195 LTCRVGRAVAGSAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLAD-----DHM 246
L R+ + V G + + GG IL +I PP GKTTL+R++++++++ +
Sbjct: 86 LNIRICKEVMGFGRKFINYIYKGGEILNTLIISPPKCGKTTLLRDLSKIISNGDSPLNRG 145
Query: 247 KRVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
+V ++D +EI +P +G R V + ++ +I A+ + PE II DEIG
Sbjct: 146 FKVSVIDERSEIAASFRGIPQLDVGI--RTDVYDNCLKSKGIILAIRSMAPEVIICDEIG 203
Query: 306 TELEALAASTIAQRGVQLVGTAHG 329
T + + GV ++ T HG
Sbjct: 204 TREDFESVLIAYNSGVSIISTIHG 227
>gi|295093404|emb|CBK82495.1| stage III sporulation protein AA [Coprococcus sp. ART55/1]
Length = 310
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 11/169 (6%)
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREI 237
RI IR+ L RV + G + + + G + L++ P GKTTL+R+I
Sbjct: 115 RIKCIRHISF----LNIRVAHEIKGCSGDVLPYIYSDGKLMNTLIVSAPCHGKTTLLRDI 170
Query: 238 ARMLADDHMKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMP 296
R+++D M V +VD +EI VP + +G R V + + S M+ V P
Sbjct: 171 IRVVSDGGMT-VGVVDERSEIAACYKGVPQNDVGM--RTDVLDCCPKASGMMMLVRTMAP 227
Query: 297 ETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+ I +DEIG + + A + G +L+ TAHG ++D++ ++ LV
Sbjct: 228 DLIAVDEIGGQQDVDAIFGVINCGCRLLATAHGYSMDDVRDRAGIRRLV 276
>gi|326790836|ref|YP_004308657.1| stage III sporulation protein AA [Clostridium lentocellum DSM 5427]
gi|326541600|gb|ADZ83459.1| stage III sporulation protein AA [Clostridium lentocellum DSM 5427]
Length = 314
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 111/254 (43%), Gaps = 35/254 (13%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQIVKH---------EDLKHAISKVGDFS-----DD 170
L E+ + G L + +W I+E+ + H +D+ + + DFS D+
Sbjct: 29 LQEIRLRAGGPILLKMNGEEWGINEEGLCHVRESLALLPQDITDVLHCMSDFSLYALEDE 88
Query: 171 NRSGID--RSLHRISAIRNRKMQ---------VIGLTCRVGRAVAGSAEIICDLVEGGGS 219
R G HR+ + ++ + G+ R+ V G ++ + +
Sbjct: 89 VRQGFITLEGGHRVGLVGKAVLEQSHIKTLKYISGMNIRIAHEVIGCSQKVMPYILSRDK 148
Query: 220 I---LVIGPPGVGKTTLIREIARMLADDHMKR----VVIVDTSNEIGGDGD-VPHSGIGR 271
+ L+I PPG GKTTL+R++ R L++ V +VD +EI VP + +G
Sbjct: 149 VYHTLIISPPGCGKTTLLRDMIRYLSEGFCGYGPYTVGVVDERSEIAACYQGVPQNRMGS 208
Query: 272 ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331
R V + + M + + P+ I +DEIG + A I GV L+ T HG
Sbjct: 209 --RTDVLDGCPKVEGMRMLLRSMAPQVIAVDEIGKADDCTALEEILNVGVSLLCTVHGKN 266
Query: 332 IDNIVKNPSLQILV 345
I++ ++ P L+ L+
Sbjct: 267 IEDCLRRPILKELL 280
>gi|342732644|ref|YP_004771483.1| stage III sporulation protein AA [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|417959181|ref|ZP_12602037.1| Stage III sporulation protein AA, SpoIIIAA [Candidatus Arthromitus
sp. SFB-1]
gi|417965028|ref|ZP_12606647.1| Stage III sporulation protein AA, SpoIIIAA [Candidatus Arthromitus
sp. SFB-4]
gi|417968209|ref|ZP_12609250.1| Stage III sporulation protein AA, SpoIIIAA [Candidatus Arthromitus
sp. SFB-co]
gi|418372898|ref|ZP_12964990.1| Stage III sporulation protein AA, SpoIIIAA [Candidatus Arthromitus
sp. SFB-mouse-SU]
gi|342330099|dbj|BAK56741.1| stage III sporulation protein AA [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|380334058|gb|EIA24534.1| Stage III sporulation protein AA, SpoIIIAA [Candidatus Arthromitus
sp. SFB-1]
gi|380339205|gb|EIA27984.1| Stage III sporulation protein AA, SpoIIIAA [Candidatus Arthromitus
sp. SFB-4]
gi|380340147|gb|EIA28776.1| Stage III sporulation protein AA, SpoIIIAA [Candidatus Arthromitus
sp. SFB-co]
gi|380342567|gb|EIA31012.1| Stage III sporulation protein AA, SpoIIIAA [Candidatus Arthromitus
sp. SFB-mouse-SU]
Length = 266
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 11/144 (7%)
Query: 195 LTCRVGRAVAGSAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLAD-----DHM 246
L R+ + V G + + GG IL +I PP GKTTL+R++++++++ +
Sbjct: 81 LNIRICKEVMGFGRKFINYIYKGGEILNTLIISPPKCGKTTLLRDLSKIISNGDSPLNRG 140
Query: 247 KRVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
+V ++D +EI +P +G R V + ++ +I A+ + PE II DEIG
Sbjct: 141 FKVSVIDERSEIAASFRGIPQLDVGI--RTDVYDNCLKSKGIILAIRSMAPEVIICDEIG 198
Query: 306 TELEALAASTIAQRGVQLVGTAHG 329
T + + GV ++ T HG
Sbjct: 199 TREDFESVLIAYNSGVSIISTIHG 222
>gi|253576304|ref|ZP_04853634.1| stage III sporulation protein AA [Paenibacillus sp. oral taxon 786
str. D14]
gi|251844197|gb|EES72215.1| stage III sporulation protein AA [Paenibacillus sp. oral taxon 786
str. D14]
Length = 343
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 17/169 (10%)
Query: 192 VIGLTCRVGRAVAGSAE-IICDLVEGGGSI----LVIGPPGVGKTTLIREIARMLADDHM 246
+ G R+ R + G A+ I+ L++ L++ PP GKTTLIR++AR ++
Sbjct: 133 ISGFNVRIAREIRGIADPILPRLLDFRHKTVYHTLILSPPQQGKTTLIRDLARQISSGTW 192
Query: 247 K---------RVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMP 296
+V ++D +EI G VP G R V + + ++ + + P
Sbjct: 193 GHPEASWPGLKVAVIDERSEIAGSKRGVP--GFDMGPRTDVMDGCPKAEGIMMMIRSMSP 250
Query: 297 ETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+ II+DEIG +A A + GV+++ TAHG ++D++ P+L L
Sbjct: 251 DVIIVDEIGRPEDAEALAEALHAGVRVIATAHGSSVDDLAARPALSRLA 299
>gi|163816778|ref|ZP_02208141.1| hypothetical protein COPEUT_02968 [Coprococcus eutactus ATCC 27759]
gi|158448035|gb|EDP25030.1| stage III sporulation protein AA [Coprococcus eutactus ATCC 27759]
Length = 294
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 14/188 (7%)
Query: 180 HRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSIL---VIGPPGVGKTTLIRE 236
+RI IR+ L RV + G + + + GG +L ++ P GKTTL+R+
Sbjct: 98 NRIKCIRHISF----LNIRVAHEIKGCSNRVMQYIVSGGRLLNTLIVSAPCHGKTTLLRD 153
Query: 237 IARMLADDHMKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHM 295
I R++++ V +VD +EI +P + +G R V + + + M+ V
Sbjct: 154 IIRVVSNSGTT-VGVVDERSEIAACYKGIPQNDVGI--RTDVLDCCPKAAGMMMLVRTMA 210
Query: 296 PETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI---ESVT 352
PE I +DEIG + A + G +L+ TAHG +ID++ + ++ LV V
Sbjct: 211 PELIAVDEIGGPADVDAIFGVVNCGCRLLATAHGYSIDDVRERTGIRRLVENRVFERYVV 270
Query: 353 LGDEEAKK 360
LG E+A +
Sbjct: 271 LGGEKAGQ 278
>gi|336437972|ref|ZP_08617616.1| hypothetical protein HMPREF0990_00010 [Lachnospiraceae bacterium
1_1_57FAA]
gi|336019390|gb|EGN49115.1| hypothetical protein HMPREF0990_00010 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 162
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 11/128 (8%)
Query: 221 LVIGPPGVGKTTLIREIARMLAD--DHMK--RVVIVDTSNEIGGDGDVPHSGIGR---AR 273
++I PP GKTTL+R++ R ++D +++K V +VD +EIGG + GI +
Sbjct: 1 MIISPPRCGKTTLLRDLIRQISDGNEYVKGCSVGVVDERSEIGG----CYMGIVQNNLGM 56
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R V + + MI + + P+ + +DEIGT + A Q G +L+ + HGM ++
Sbjct: 57 RTDVLDCCPKAEGMIMLIRSMSPQVVAVDEIGTAEDIHAIEYAMQCGCKLIASVHGMDME 116
Query: 334 NIVKNPSL 341
+ P L
Sbjct: 117 EAARKPVL 124
>gi|288870190|ref|ZP_06113246.2| stage III sporulation protein AA [Clostridium hathewayi DSM 13479]
gi|288868079|gb|EFD00378.1| stage III sporulation protein AA [Clostridium hathewayi DSM 13479]
Length = 356
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKR----VVIVDTSNEIGGDGD-VPHSGIGRARRM 275
L+I PP GKTTL+R++ R +++ V +VD +EIG +P + +G R
Sbjct: 177 LIISPPRCGKTTLLRDLIRQISNGTEAHPGMTVGVVDERSEIGACYQGIPQNELGI--RT 234
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
+ + + M+ + P I +DEIG+ + A + G +L+ T HG +ID++
Sbjct: 235 DILDCCPKARGMMMLIRTMSPRVIAVDEIGSREDLEAVEYVMNCGCKLIATVHGSSIDDL 294
Query: 336 VKNPSLQILV 345
+ P L+ LV
Sbjct: 295 KQKPVLRRLV 304
>gi|167747013|ref|ZP_02419140.1| hypothetical protein ANACAC_01725 [Anaerostipes caccae DSM 14662]
gi|167653973|gb|EDR98102.1| stage III sporulation protein AA [Anaerostipes caccae DSM 14662]
Length = 310
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 36/250 (14%)
Query: 124 DLIEVVMDLGRKPLARFPSGDWVISEQ-----------IVKHEDLKHAISKVGDFS---- 168
+L E+ + + + + R+ + ++ +S + ++ ++LK + + ++S
Sbjct: 28 ELQEIRLRIHQPVIVRYENKEYFLSTEGKLTASHHFVHVLTRDELKQMMEYISNYSLYAY 87
Query: 169 -DDNRSGI--DRSLHRIS----------AIRNRKMQVIGLTCRVGRAVAGSAEIICDLVE 215
D R G + HR+ IR K + L RV V G AE I +
Sbjct: 88 EDQLRQGFLTVKGGHRVGIAGKVSIEDGEIRTMK-HITFLNIRVAHEVIGCAEGIFEHCT 146
Query: 216 GGGS---ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDG-DVPHSGIGR 271
G +L+I PPG GKTTL+R++ R +A D + V +VD +EI VP + +G
Sbjct: 147 KDGQLLPVLIISPPGRGKTTLLRDMIR-IASDGGETVGVVDERSEIAASYMGVPQNKVG- 204
Query: 272 ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331
R V + + M+ V + P I +DEIG + + A A G L+ T HG
Sbjct: 205 -IRTDVMDGCPKSEGMMMLVRSMAPNVIAVDEIGKKEDVDAMLYSAYCGCTLMATIHGKD 263
Query: 332 IDNIVKNPSL 341
++ + K P +
Sbjct: 264 MEELKKVPYV 273
>gi|417961837|ref|ZP_12604170.1| Stage III sporulation protein AA, partial [Candidatus Arthromitus
sp. SFB-2]
gi|380332103|gb|EIA23008.1| Stage III sporulation protein AA, partial [Candidatus Arthromitus
sp. SFB-2]
Length = 186
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 11/144 (7%)
Query: 195 LTCRVGRAVAGSAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLAD-----DHM 246
L R+ + V G + + GG IL +I PP GKTTL+R++++++++ +
Sbjct: 1 LNIRICKEVMGFGRKFINYIYKGGEILNTLIISPPKCGKTTLLRDLSKIISNGDSPLNRG 60
Query: 247 KRVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
+V ++D +EI +P +G R V + ++ +I A+ + PE II DEIG
Sbjct: 61 FKVSVIDERSEIAASFRGIPQLDVGI--RTDVYDNCLKSKGIILAIRSMAPEVIICDEIG 118
Query: 306 TELEALAASTIAQRGVQLVGTAHG 329
T + + GV ++ T HG
Sbjct: 119 TREDFESVLIAYNSGVSIISTIHG 142
>gi|336434712|ref|ZP_08614434.1| stage III sporulation protein AA [Lachnospiraceae bacterium
1_4_56FAA]
gi|336008491|gb|EGN38507.1| stage III sporulation protein AA [Lachnospiraceae bacterium
1_4_56FAA]
Length = 313
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGDGDVPHSGIGR---AR 273
L+I PP GKTTLIR++ R ++D + V +VD +E+GG + GI +
Sbjct: 152 LIISPPCCGKTTLIRDMIRQISDGNAYVKGCTVGVVDERSELGG----CYLGIAQNDIGM 207
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R + + + MI + + P + IDEIG E E A G +L+ + HG ++
Sbjct: 208 RTDILDCCPKAEGMILLIRSMAPRVLAIDEIGGEEEIRALEYAMHCGCKLIASVHGSDLE 267
Query: 334 NIVKNPSLQILV 345
I + P ++ L+
Sbjct: 268 EISERPGVKELI 279
>gi|404371401|ref|ZP_10976707.1| stage III sporulation protein AA [Clostridium sp. 7_2_43FAA]
gi|226912470|gb|EEH97671.1| stage III sporulation protein AA [Clostridium sp. 7_2_43FAA]
Length = 300
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 110/229 (48%), Gaps = 28/229 (12%)
Query: 135 KPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS-----DDNRSGID--RSLHRI----- 182
KP+ + +I + + ED+K + K+ ++S ++ + G R HRI
Sbjct: 30 KPIIVNLAYKEIILKYVTTVEDIKQILVKISNYSLYAYEEEIKQGYITIRGGHRIGIAGE 89
Query: 183 SAIRNRKMQVI----GLTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIR 235
+ N +++ I L R+ + V G + I + + L++ PP GKTT++R
Sbjct: 90 CVLVNGEVRTIRNISSLNIRICKEVIGCSNEIMKYITKEDRVFNTLIVSPPKCGKTTILR 149
Query: 236 EIARMLA------DDHMKRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMI 288
+IA+ ++ + K+V I+D +EI + VP +G R + + ++ MI
Sbjct: 150 DIAKNISTGMPIVNLKGKKVSIIDERSEIAACFNGVPQLDVGI--RSDILDNCLKKDGMI 207
Query: 289 EAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
A+ + P+ +I DEIGT+ + A GV ++ T HG +I+++ K
Sbjct: 208 MAIRSLSPDILICDEIGTDGDIEALHMAFNSGVNIIVTIHGYSIEDVYK 256
>gi|225174900|ref|ZP_03728897.1| stage III sporulation protein AA [Dethiobacter alkaliphilus AHT 1]
gi|225169540|gb|EEG78337.1| stage III sporulation protein AA [Dethiobacter alkaliphilus AHT 1]
Length = 341
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 109/250 (43%), Gaps = 32/250 (12%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS---------------- 168
L E+ + GR L R SG+ + +V DL+ + + ++S
Sbjct: 53 LEEIRLRAGRPLLVRTGSGETQVGRDMVTAADLQSVLLLITEYSLYARDEELKRGYLALP 112
Query: 169 DDNRSG-IDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAE-----IICDLVEGGGSILV 222
+R+G + R++ ++ + + G+ R+ R V G+ + + C L+
Sbjct: 113 GGHRAGFVGRTVLEGGEVKLLR-DISGINIRIARQVLGAGKQLLPSLYCQKTRRVRHTLI 171
Query: 223 IGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGG-DGDVPHSGIGRARRM 275
I P GKTT++R++AR+ + V IVD +EI G VP +G R
Sbjct: 172 ISAPQAGKTTVLRDLARLFGNGDAASGRPAFNVGIVDERSEIAGCYQGVPQLDVGL--RS 229
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + M+ V + P+ ++ DE+G +A A G ++ TAHG ++ +
Sbjct: 230 DVLDGCPKAEGMMMLVRSMSPQIVVTDELGRPEDARAVEEAVNTGASILATAHGQSMTEL 289
Query: 336 VKNPSLQILV 345
+ PSL L+
Sbjct: 290 FRRPSLAYLL 299
>gi|312622749|ref|YP_004024362.1| AAA atpase [Caldicellulosiruptor kronotskyensis 2002]
gi|312203216|gb|ADQ46543.1| AAA ATPase [Caldicellulosiruptor kronotskyensis 2002]
Length = 313
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 35/230 (15%)
Query: 124 DLIEVVMDLGRKPLARFPSGDWVISEQIVKHE----DLKHAISKVGDFS--DDNRSGIDR 177
D + + D+ K ++R + E+ + D H I G F+ + N+ G
Sbjct: 58 DSLIITKDILNKCISRLTNNSLFTYEKNILQGYFTVDGGHRIGVAGKFTFENGNKQGFVS 117
Query: 178 SLHRISAIRNRKMQVIGLTCRVGRAVAGSAE-----IICDLVEGGGSILVIGPPGVGKTT 232
S+ GL RV + V +E I+ D ++ + L+I PPG GKTT
Sbjct: 118 SIS-------------GLNIRVAKTVRIESEKILKSIMKDSLDSIYNTLIISPPGCGKTT 164
Query: 233 LIREIARMLADDH------MKRVVIVDTSNEIG-GDGDVPHSGIGRARRMQVPNVNMQHS 285
L+R I R+L+ RVV++D +EI + D GI R + V+
Sbjct: 165 LLRNIIRILSSGEGILAGKGFRVVVIDERSEICPKNNDRREIGI---RTFVLDGVDKLRG 221
Query: 286 VMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
+++ AV + P+ I +DE+G+ + LA ++ GV+++ T H +I +I
Sbjct: 222 ILM-AVRSLNPQIIAMDELGSPSDYLAVCEASKMGVRIIATMHAESIKDI 270
>gi|398817112|ref|ZP_10575743.1| stage III sporulation protein AA [Brevibacillus sp. BC25]
gi|398030914|gb|EJL24313.1| stage III sporulation protein AA [Brevibacillus sp. BC25]
Length = 320
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 10/162 (6%)
Query: 192 VIGLTCRVGRAVAGSA-EIICDLVEGGG--SILVIGPPGVGKTTLIREIARMLAD----D 244
V R+ R G+A +++ L E G + L+I PP GKTTL+R++AR ++
Sbjct: 121 VTSFNIRIAREKKGAARKVMPYLFEDGKLLNTLLISPPQCGKTTLLRDMARTISYGSEWS 180
Query: 245 HMKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
++V IVD +E+ G VP +G R V + + + M+ + + P+ +I+DE
Sbjct: 181 SSRKVGIVDERSELAGCLQGVPQRDVGP--RTDVLDACPKAAGMMMMIRSMSPDVLIVDE 238
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+G + A GV ++ +AHG ++ + + P L L+
Sbjct: 239 VGRTEDGDAVWEAIHAGVAVICSAHGASVKEVAERPMLGKLI 280
>gi|312134806|ref|YP_004002144.1| aaa atpase [Caldicellulosiruptor owensensis OL]
gi|311774857|gb|ADQ04344.1| AAA ATPase [Caldicellulosiruptor owensensis OL]
Length = 313
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 11/122 (9%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDH------MKRVVIVDTSNEIGG-DGDVPHSGIGRAR 273
L+I PPG GKTTL+R I R+L+ RVV++D +EI D D GI R
Sbjct: 153 LIISPPGCGKTTLLRNIVRILSSGEGILAGRGFRVVVIDERSEICMVDNDRREIGI---R 209
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
+ V+ V++ AV + P+ I +DE+G+ + LA ++ GV+++ T H ++
Sbjct: 210 TFVLDGVDKLRGVLM-AVRSLNPQIIAMDELGSPSDYLAVCEASKMGVKIIATMHAESVK 268
Query: 334 NI 335
+I
Sbjct: 269 DI 270
>gi|304316750|ref|YP_003851895.1| stage III sporulation protein AA [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778252|gb|ADL68811.1| stage III sporulation protein AA [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 333
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 15/160 (9%)
Query: 190 MQVIGLTCRVGRAVAGSAEIICDLVEGGGSI----LVIGPPGVGKTTLIREIARMLA--- 242
+ V G R+ R G+++ I + +I L+I PP GKTTL+R+IAR ++
Sbjct: 126 VNVSGFNYRIMRQCIGASDEIMKYIIKYPNIVYNTLIISPPQCGKTTLLRDIARNISNGM 185
Query: 243 ---DDHMKRVVIVDTSNEIGG--DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPE 297
D + + V I+D +EI G+ P + +G R V + +H ++ + + P+
Sbjct: 186 ADLDFNGENVSIIDERSEIAACFKGN-PQNDVGY--RTDVLDSCPKHIGILMMIRSMSPK 242
Query: 298 TIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
II DEIG + LA GV ++ T HG I++I++
Sbjct: 243 VIITDEIGKIEDILAIHEALNAGVSIITTVHGKDIEDIMR 282
>gi|302872161|ref|YP_003840797.1| AAA ATPase [Caldicellulosiruptor obsidiansis OB47]
gi|302575020|gb|ADL42811.1| AAA ATPase [Caldicellulosiruptor obsidiansis OB47]
Length = 313
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 11/122 (9%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDH------MKRVVIVDTSNEIGG-DGDVPHSGIGRAR 273
L+I PPG GKTTL+R I R+L+ RVV++D +EI D D GI R
Sbjct: 153 LIISPPGCGKTTLLRNIVRILSSGEGILAGRGFRVVVIDERSEICMVDNDRREIGI---R 209
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
+ V+ V++ AV + P+ I +DE+G+ + LA ++ GV+++ T H ++
Sbjct: 210 TFVLDGVDKLRGVLM-AVRSLNPQIIAMDELGSPSDYLAVCEASKMGVKIIATMHAESVK 268
Query: 334 NI 335
+I
Sbjct: 269 DI 270
>gi|308069614|ref|YP_003871219.1| stage III sporulation protein AA [Paenibacillus polymyxa E681]
gi|305858893|gb|ADM70681.1| Stage III sporulation protein AA [Paenibacillus polymyxa E681]
Length = 331
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 17/174 (9%)
Query: 195 LTCRVGRAVAGSAEIICDLVEG--GGSI---LVIGPPGVGKTTLIREIARMLADDHMK-- 247
R+ RA+ G A+ I V G I L++ PP GKTTL+R++AR L+ M+
Sbjct: 123 FNVRIARAIPGIADRILPYVADRMSGKIRHTLILSPPQHGKTTLLRDLARQLSYGGMESN 182
Query: 248 -------RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETI 299
+V I+D +EI G +P +G R V + + M+ + + P+ +
Sbjct: 183 GGRRNGLKVGIIDERSEIAGSHKGIPGFDVGP--RTDVLDGCPKAEGMMMMIRSMSPDVL 240
Query: 300 IIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTL 353
I+DEIG +A A G+ ++ +AHG + + P+ L G E L
Sbjct: 241 IVDEIGRPEDAEAVREALHAGIAVIASAHGRDVAEMATRPAFAGLTTGQELFQL 294
>gi|433654894|ref|YP_007298602.1| stage III sporulation protein AA [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293083|gb|AGB18905.1| stage III sporulation protein AA [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 333
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 15/160 (9%)
Query: 190 MQVIGLTCRVGRAVAGSAEIICDLVEGGGSI----LVIGPPGVGKTTLIREIARMLA--- 242
+ V G R+ R G+++ I + +I L+I PP GKTTL+R+IAR ++
Sbjct: 126 VNVSGFNYRIMRQCIGASDEIMKYIIKYPNIVYNTLIISPPQCGKTTLLRDIARNISNGM 185
Query: 243 ---DDHMKRVVIVDTSNEIGG--DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPE 297
D + + V I+D +EI G+ P + +G R V + +H ++ + + P+
Sbjct: 186 ADLDFNGENVSIIDERSEIAACFKGN-PQNDVGY--RTDVLDSCPKHIGILMMIRSMSPK 242
Query: 298 TIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
II DEIG + LA GV ++ T HG I++I++
Sbjct: 243 VIITDEIGKIEDILAIHEALNAGVSIITTVHGKDIEDIMR 282
>gi|397906464|ref|ZP_10507264.1| Stage III sporulation protein AA [Caloramator australicus RC3]
gi|397160421|emb|CCJ34601.1| Stage III sporulation protein AA [Caloramator australicus RC3]
Length = 311
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 195 LTCRVGRAVAGSAEIICDLVEGGG--SILVIGPPGVGKTTLIREIARMLADDHMK----- 247
L R+ R + G ++ I + G L+I PPG GKTTL+R+I R L+D + +
Sbjct: 127 LNVRIAREIKGCSDAIVKKLYSDGIKHTLIISPPGCGKTTLLRDIIRNLSDGNKRLNVRG 186
Query: 248 -RVVIVDTSNEIGG-DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
R+ +VD EI VP +G R V + + + + + PE I +DEIG
Sbjct: 187 YRIGVVDERGEIAACHQGVPQLDVG--LRTDVLDSCPKTLGIYMLLRSMGPEIIAVDEIG 244
Query: 306 TELEALAASTIAQRGVQLVGTAHGMTIDNI 335
+ A + GV+++ TAH T D I
Sbjct: 245 GLDDTKAIQDALKAGVKIIATAHAGTFDEI 274
>gi|222528982|ref|YP_002572864.1| ATPase AAA [Caldicellulosiruptor bescii DSM 6725]
gi|222455829|gb|ACM60091.1| AAA ATPase [Caldicellulosiruptor bescii DSM 6725]
Length = 313
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 126/272 (46%), Gaps = 42/272 (15%)
Query: 98 DIELELFLELLPSRMRREL--CMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHE 155
+ E+E L+ LP+ + + L ++ E+ ++L PL ++V I+ E
Sbjct: 7 NTEVEKLLDRLPAEIVYTIKTTFEENLHEICEIKINL-NCPLIVIGKREYVFESLIITKE 65
Query: 156 DLKHAISKVGDFSDDNRSGIDRSL----------HRISA-----IRNRKMQ-----VIGL 195
L IS++ ++++ ++++ HRI N Q + GL
Sbjct: 66 ILNKCISRL---TNNSLFTYEKNILQGYFTVNGGHRIGVAGKFTFENGNKQGFVSSISGL 122
Query: 196 TCRVGRAVAGSAE-----IICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDH----- 245
RV + V +E I+ + ++ + L+I PPG GKTTL+R I R+L+
Sbjct: 123 NIRVAKTVRIESEKILKSIVKENLDSIYNTLIISPPGCGKTTLLRNIIRILSSGEGILAG 182
Query: 246 -MKRVVIVDTSNEIGG-DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
RVV++D +EI + D GI R + V+ +++ AV + P+ I +DE
Sbjct: 183 RGLRVVVIDERSEICTENNDKREIGI---RTFVLDGVDKLRGILM-AVRSLNPQIIAMDE 238
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
+G+ + LA ++ GV+++ T H +I +I
Sbjct: 239 LGSPSDYLAVCEASKMGVRIIATMHAESIKDI 270
>gi|357051938|ref|ZP_09113056.1| stage III sporulation protein AA [Clostridium clostridioforme
2_1_49FAA]
gi|355387206|gb|EHG34232.1| stage III sporulation protein AA [Clostridium clostridioforme
2_1_49FAA]
Length = 357
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 15/148 (10%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKR----------VVIVDTSNEIGGDGD-VPHSGI 269
LVI PP GKTTL+R+I R ++D + V +VD +E+G VP + +
Sbjct: 179 LVISPPRCGKTTLLRDIIRQVSDGPRTQRAGRRIPGVSVGVVDERSELGACYQGVPQNDL 238
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHG 329
G R + + + M+ V + P+ I +DEIG+ + A + G L T HG
Sbjct: 239 GM--RTDILDCCPKSQGMMMLVRSMAPQVIAVDEIGSREDVRAIEYVRNCGCSLAATIHG 296
Query: 330 MTIDNIVKNPSLQILV--GGIESVTLGD 355
++++I++ P++ L+ G E + L D
Sbjct: 297 SSLEDIMQKPAVGELIHQGAFERMILLD 324
>gi|160938291|ref|ZP_02085646.1| hypothetical protein CLOBOL_03187 [Clostridium bolteae ATCC
BAA-613]
gi|158438664|gb|EDP16421.1| hypothetical protein CLOBOL_03187 [Clostridium bolteae ATCC
BAA-613]
Length = 357
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 15/148 (10%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKR----------VVIVDTSNEIGGDGD-VPHSGI 269
LVI PP GKTTL+R++ R ++D + V +VD +E+G VP + +
Sbjct: 179 LVISPPRCGKTTLLRDMIRQVSDGPRTQRSGRRITGVSVGVVDERSELGACYQGVPQNDL 238
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHG 329
G R V + + M+ V + P+ I +DEIG+ + A + G L T HG
Sbjct: 239 GM--RTDVLDCCPKSQGMMMLVRSMAPQVIAVDEIGSREDVQAIEYVRNCGCSLAATIHG 296
Query: 330 MTIDNIVKNPSLQILV--GGIESVTLGD 355
++++I++ P++ L+ G E + L D
Sbjct: 297 SSLEDIMQKPAVGELIQQGAFERMILLD 324
>gi|331091290|ref|ZP_08340131.1| stage III sporulation protein AA [Lachnospiraceae bacterium
2_1_46FAA]
gi|330404737|gb|EGG84276.1| stage III sporulation protein AA [Lachnospiraceae bacterium
2_1_46FAA]
Length = 307
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 117/262 (44%), Gaps = 39/262 (14%)
Query: 115 ELCMHRE---LGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS--- 168
+ C+ RE +L E+ + +G KPL G + + V+ ED++ + + ++S
Sbjct: 17 QCCVEREQFDFSNLQEIRLRVG-KPLTVLYKGKEKLLMK-VEQEDVRETMEYISNYSLYA 74
Query: 169 --DDNRSGID--RSLHRISAIRNRKMQ---------VIGLTCRVGRAVAGSAEIICDLVE 215
++ R G HR+ M+ + + RV V G A+ + +
Sbjct: 75 YENEMRQGFITIEGGHRVGMAGKVVMEEGKVKSLKYISSINIRVAHEVRGCADKLFPYIT 134
Query: 216 GGGSI---LVIGPPGVGKTTLIREIARMLADDHMKR----VVIVDTSNEIGGDGDVPHSG 268
I L+I PP GKTTL+R++ R ++D + V +VD +E+GG
Sbjct: 135 KERQICHTLIISPPRCGKTTLLRDMIRQISDGNRWVKGVPVGVVDERSELGG------CY 188
Query: 269 IGRAR-----RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQL 323
+G A+ R + + + M+ + + P+ I +DEIG E A G ++
Sbjct: 189 MGTAQNELGIRTDILDCCPKADGMLMLIRSMAPQVIAVDEIGAREEIRAIEYALHCGCKM 248
Query: 324 VGTAHGMTIDNIVKNPSLQILV 345
+ TAHG++++ + K P + L+
Sbjct: 249 LATAHGVSMEEMKKKPFFEQLI 270
>gi|304407059|ref|ZP_07388713.1| stage III sporulation protein AA [Paenibacillus curdlanolyticus
YK9]
gi|304344046|gb|EFM09886.1| stage III sporulation protein AA [Paenibacillus curdlanolyticus
YK9]
Length = 357
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 18/168 (10%)
Query: 194 GLTCRVGRAVAGSAEIICDLV-----EGGGSILVIGPPGVGKTTLIREIARMLADDHMK- 247
G R+ R VAG+A+ L+ S LV+G P GKTT IR++AR ++ +
Sbjct: 124 GFNVRIARDVAGAADSTLPLLLDRTRRSIASTLVVGAPRQGKTTFIRDLARSISYGRWRS 183
Query: 248 ---------RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPE 297
+V IVD +EI VP +G R V + + M+ + + PE
Sbjct: 184 TAAAGWPGRKVGIVDERSEIAASVRGVPTFDVGP--RTDVMDACPKAEGMMMMIRSMSPE 241
Query: 298 TIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+I+DEIG E + A + GV ++ TAH P+++ L+
Sbjct: 242 VLIVDEIGREEDVEAIREAVRAGVSVIATAHAGDWQEAAARPAIRRLL 289
>gi|334341607|ref|YP_004546587.1| stage III sporulation protein AA [Desulfotomaculum ruminis DSM
2154]
gi|334092961|gb|AEG61301.1| stage III sporulation protein AA [Desulfotomaculum ruminis DSM
2154]
Length = 337
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 13/162 (8%)
Query: 194 GLTCRVGRAVAGSAE-IICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMK-- 247
G R+ RAV G A+ ++ L+ G +++ PP GKTTL+R++ R L++ +
Sbjct: 140 GFNFRISRAVPGVADRVLPYLIAPDGKFYHTMLVSPPRCGKTTLLRDLIRRLSEGVPELA 199
Query: 248 ----RVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
V +VD +EI G VP +G R V + + + M+ + + P I D
Sbjct: 200 FPGVNVGVVDERSEIAGCYRGVPQRDVGP--RTDVLDACPKAAGMMMLLRSMGPVVIATD 257
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
EIG + + A + GV+++ T HG +++ + P+LQ L
Sbjct: 258 EIGRQEDVAALEEVLNAGVKVLTTVHGSSLEELADRPALQYL 299
>gi|239827682|ref|YP_002950306.1| stage III sporulation protein AA [Geobacillus sp. WCH70]
gi|239807975|gb|ACS25040.1| stage III sporulation protein AA [Geobacillus sp. WCH70]
Length = 308
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 15/173 (8%)
Query: 182 ISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG--GSILVIGPPGVGKTTLIREIAR 239
+ AIR+ V R+ + G AE + V G + ++IG P GKTTL+R+ AR
Sbjct: 103 VKAIRH----VTSFNIRIAKQRIGIAEPLLPYVYNGRWYNTMIIGSPQTGKTTLLRDAAR 158
Query: 240 MLA----DDHM--KRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVE 292
M++ + H+ ++V IVD +EI G +P +G R+ V + + M+ +
Sbjct: 159 MISMGINEKHIPSQKVGIVDERSEIAGCVKGIPQFELGN--RVDVLDACPKAEGMMMMIR 216
Query: 293 NHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+ P+ +I+DEIG ++ A GV + T HG ++ + P+L+ ++
Sbjct: 217 SMSPDVLIVDEIGRAEDSEAILEAVNAGVCIWTTVHGRKWKDVFQRPTLRPII 269
>gi|291562681|emb|CBL41497.1| stage III sporulation protein AA [butyrate-producing bacterium
SS3/4]
Length = 323
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 195 LTCRVGRAVAGSAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLADDHM----K 247
L RV V G A+ + + G + L +I PPG GKTTL+R++ R L+ K
Sbjct: 132 LNIRVAHEVKGCAKNVLPYLMDGETFLDTLLISPPGAGKTTLLRDLIRELSCGGTWGAGK 191
Query: 248 RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
V +VD +EI G + +G R V + + M+ + + P+ + +DE G
Sbjct: 192 NVSVVDERSEIAACFGGIAQCDLGP--RTDVMDGCPKSEGMLMMLRSMAPQVLAVDEAGG 249
Query: 307 ELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
E E LA G +++ T HG + +I+K P+ + L
Sbjct: 250 EGEILAMKYGMNCGCRILATVHGADVGDIMKRPAWREL 287
>gi|435853281|ref|YP_007314600.1| stage III sporulation protein AA [Halobacteroides halobius DSM
5150]
gi|433669692|gb|AGB40507.1| stage III sporulation protein AA [Halobacteroides halobius DSM
5150]
Length = 317
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 28/193 (14%)
Query: 167 FSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAE-IICDLVEGGGSI---LV 222
S +R G+ + R A R + L R + V G+A +I ++ G I L+
Sbjct: 105 LSGGHRVGLVGQVIRDRAKIKRIKHIAALNIRFCQEVIGAANGVINQIINGSNDIYNTLI 164
Query: 223 IGPPGVGKTTLIREIARMLADDHMK-----RVVIVDTSNEIGGDGDVPHSGIGRAR---R 274
I PP GKTTL+R++ R +++ K +V +VD +EIGG + G+ + + R
Sbjct: 165 ISPPRCGKTTLLRDLVRQISNGIPKQFNGLKVGVVDERSEIGG----AYQGVAQNQIGIR 220
Query: 275 MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE------LEALAASTIAQRGVQLVGTAH 328
+ + + ++ + + P I+ DEIGT+ LEAL A GV+++ T H
Sbjct: 221 TDLLDRAPKPEGILLLIRSMSPNVIVTDEIGTKEDVDILLEALNA------GVRVITTVH 274
Query: 329 GMTIDNIVKNPSL 341
G + + PSL
Sbjct: 275 GSNLAEVKSRPSL 287
>gi|210615799|ref|ZP_03290780.1| hypothetical protein CLONEX_02998 [Clostridium nexile DSM 1787]
gi|210150135|gb|EEA81144.1| hypothetical protein CLONEX_02998 [Clostridium nexile DSM 1787]
Length = 317
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHM----KRVVIVDTSNEIGGDG-DVPHSGIGRARRM 275
L+I PP GKTTL+R++ R ++D + V +VD +E+GG V + +G R
Sbjct: 155 LIISPPRCGKTTLLRDVIRQISDGNRWIKGCTVGVVDERSELGGCYLGVIQNNLGM--RT 212
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
+ + + MI + + P+ + +DEIG + + A G +++ TAHG +++ I
Sbjct: 213 DILDRCPKADGMIMLIRSMAPQVVAVDEIGAKEDVHAIEYAMHCGCKMLATAHGDSMEEI 272
Query: 336 VKNPSLQILV 345
K P + L+
Sbjct: 273 CKKPIFEKLI 282
>gi|374324640|ref|YP_005077769.1| stage III sporulation protein AA [Paenibacillus terrae HPL-003]
gi|357203649|gb|AET61546.1| stage III sporulation protein AA [Paenibacillus terrae HPL-003]
Length = 331
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 17/174 (9%)
Query: 195 LTCRVGRAVAGSAEIICDLV--EGGGSIL---VIGPPGVGKTTLIREIARMLADDHMK-- 247
R+ RA+ G A+ I V G IL ++ PP GKTTL+R++AR L+ ++
Sbjct: 123 FNVRIARAIPGIADRILPYVADRKSGKILHTLILSPPQHGKTTLLRDLARQLSYGGLESN 182
Query: 248 -------RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETI 299
+V I+D +EI G +P +G R V + + M+ + + P+ +
Sbjct: 183 GGRRSGLKVGIIDERSEIAGSHKGIPGFDVGP--RTDVLDGCPKAEGMMMMIRSMSPDVL 240
Query: 300 IIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTL 353
I+DEIG +A A G+ ++ +AHG + + P+ L G E L
Sbjct: 241 IVDEIGRPEDAEAVREALHAGIAVIASAHGRDVAEMATRPAFAGLTTGQELFQL 294
>gi|323485467|ref|ZP_08090813.1| stage III sporulation protein AA [Clostridium symbiosum WAL-14163]
gi|323694458|ref|ZP_08108628.1| stage III sporulation protein AA [Clostridium symbiosum WAL-14673]
gi|355628505|ref|ZP_09049787.1| stage III sporulation protein AA [Clostridium sp. 7_3_54FAA]
gi|323401115|gb|EGA93467.1| stage III sporulation protein AA [Clostridium symbiosum WAL-14163]
gi|323501446|gb|EGB17338.1| stage III sporulation protein AA [Clostridium symbiosum WAL-14673]
gi|354819754|gb|EHF04192.1| stage III sporulation protein AA [Clostridium sp. 7_3_54FAA]
Length = 330
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 11/130 (8%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHM--------KRVVIVDTSNEIGGD-GDVPHSGIGR 271
L+I PP GKTTL+R+I R +D K V +VD +EIG +P + +G
Sbjct: 165 LIISPPRCGKTTLLRDIVRQASDGGSSGKRVRAGKTVGVVDERSEIGACFQGIPQNDVGL 224
Query: 272 ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331
R + + + + M+ + + P+ + +DEIG + + A + G +++ T HG +
Sbjct: 225 --RTDILDCCPKAAGMMMLIRSMAPDVVAVDEIGGDPDLEALRCVMNCGCRILATVHGTS 282
Query: 332 IDNIVKNPSL 341
+++I P
Sbjct: 283 MEDIRNKPGF 292
>gi|312110267|ref|YP_003988583.1| stage III sporulation protein AA [Geobacillus sp. Y4.1MC1]
gi|423719293|ref|ZP_17693475.1| stage III sporulation protein AA [Geobacillus thermoglucosidans
TNO-09.020]
gi|311215368|gb|ADP73972.1| stage III sporulation protein AA [Geobacillus sp. Y4.1MC1]
gi|383368196|gb|EID45471.1| stage III sporulation protein AA [Geobacillus thermoglucosidans
TNO-09.020]
Length = 308
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 22/197 (11%)
Query: 191 QVIGLTCRVGRAVAGSAEIICDLVEGG--GSILVIGPPGVGKTTLIREIARMLADDHMKR 248
V R+ + G AE + V G + ++IG P GKTTL+R+ ARM++ + R
Sbjct: 108 HVTSFNIRIAKQKIGIAEPLVPYVYDGRWHNTMIIGSPQTGKTTLLRDAARMISTGILAR 167
Query: 249 ------VVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIII 301
V IVD +EI G +P +G R+ V + + M+ + + P+ +I+
Sbjct: 168 HIPSQKVGIVDERSEIAGCVKGIPQFQLGN--RVDVLDACPKAEGMMMMIRSMSPDVLIV 225
Query: 302 DEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKR 361
DEIG + A GV + T HG ++++ P+L+ ++ ++ +R
Sbjct: 226 DEIGRSEDGAAILEAVNAGVCIWTTVHGRNRKDVLQRPTLRPIM---------EQGVFER 276
Query: 362 KVQKTILERKGPPTFTC 378
V+ T +GP T C
Sbjct: 277 FVELT--NERGPGTVRC 291
>gi|169831169|ref|YP_001717151.1| ATPase AAA [Candidatus Desulforudis audaxviator MP104C]
gi|169638013|gb|ACA59519.1| AAA ATPase [Candidatus Desulforudis audaxviator MP104C]
Length = 332
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Query: 183 SAIRNRKMQVIGLTCRVGRAVAGSAE-IICDLVEGGGSI---LVIGPPGVGKTTLIREIA 238
A+R K + G+ R+ R V G+A+ ++ LV G + L+I PPG GKTTL+R++
Sbjct: 123 GAVRTMK-HLSGVNFRISREVPGAADRVLPWLVHGSRATYNTLIISPPGCGKTTLLRDLV 181
Query: 239 RMLADDHMK------RVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAV 291
R + + V +VD +EI G VP +G R V + + M+ +
Sbjct: 182 RQFSAGVPRLGFAGLTVGVVDERSEIAGCYRGVPQLDVGP--RTDVLDGCPKAEGMMMLL 239
Query: 292 ENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
P+ I DEIG + A + GV+++ TAH ++D + P L+ ++
Sbjct: 240 RAFSPDVIATDEIGRREDVTALEEMLNAGVKILATAHAASLDELRGRPVLRYIL 293
>gi|390935036|ref|YP_006392541.1| stage III sporulation protein AA [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570537|gb|AFK86942.1| stage III sporulation protein AA [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 334
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 17/169 (10%)
Query: 177 RSLHRISAIRNRKM-QVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIR 235
+++ IS R M Q IG + + R + +++ + L+I PP GKTTLIR
Sbjct: 123 KTIVNISGFNYRIMRQCIGSSDEIMRYIVKYPDVV-------NNTLIISPPQCGKTTLIR 175
Query: 236 EIARMLADD------HMKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMI 288
+IAR +++ ++V IVD +EI +P + +G R V ++ +H ++
Sbjct: 176 DIARNISNGMPELNFQGEKVSIVDERSEIAACFKGIPQNDVG--YRTDVLDLCPKHIGIL 233
Query: 289 EAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
+ + P+ II DEIG + + GV ++ T HG I+++ +
Sbjct: 234 MMIRSMSPKVIITDEIGKVEDISSIHEALNAGVSIITTVHGNGIEDVAR 282
>gi|404330166|ref|ZP_10970614.1| stage III sporulation protein AA [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 315
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVV------IVDTSNEIGGD-GDVPHSGIGR 271
S L IG P GKTTL+R++AR +++ +R + I+D +EI G G VP + +G
Sbjct: 144 STLFIGAPQTGKTTLLRDLARFISNGLPERGIPGEKTGIIDERSEIAGCVGGVPQNDVG- 202
Query: 272 ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331
R V + + M+ + + P + +DEIG + A GV ++ +AH +
Sbjct: 203 -PRTDVLDACPKAEGMMMMIRSMSPGVLAVDEIGGREDMDALVEALNAGVTVLASAHAGS 261
Query: 332 IDNIVKNPSL 341
+D + K PS
Sbjct: 262 LDELRKRPSF 271
>gi|331084722|ref|ZP_08333810.1| stage III sporulation protein AA [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330410816|gb|EGG90238.1| stage III sporulation protein AA [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 321
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHM----KRVVIVDTSNEIGGDGDVPHSGIGRAR--- 273
L+I PPG GKTTL+R++ R ++D + + V +VD +E+G H GI +
Sbjct: 152 LIISPPGCGKTTLLRDLIRQISDGNRWIQGESVGVVDERSELG----ACHLGIAQNELGI 207
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R + + + M+ + + P+ + +DEIG + A G +++ T HG ++
Sbjct: 208 RTDILDGCPKAEGMLMLIRSMAPKILAVDEIGAPEDIHAMEYAMHCGCRMLATVHGTSMA 267
Query: 334 NIVKNPSLQILV 345
+ K P LQ L+
Sbjct: 268 EVQKKPVLQQLI 279
>gi|315646315|ref|ZP_07899435.1| stage III sporulation protein AA [Paenibacillus vortex V453]
gi|315278514|gb|EFU41830.1| stage III sporulation protein AA [Paenibacillus vortex V453]
Length = 332
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 21/180 (11%)
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSAE-IICDLVEGGGS----ILVIGPPGVGKTTLIR 235
R+ IR+ + G R+ + V G+A+ II L++ L++ PP GKTTL+R
Sbjct: 115 RVEHIRD----ISGFNVRIAKEVQGAADDIIPHLLDRKRKRVLHTLILSPPQQGKTTLLR 170
Query: 236 EIARMLADDHMKR---------VVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHS 285
++AR ++ + V IVD +EI G VP +G R V + +
Sbjct: 171 DLARQISHGKWGKSAVHWPGMKVGIVDERSEIAGCLRGVPGFDVGP--RTDVLDGCPKAE 228
Query: 286 VMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
M+ + + P+ +I+DEIG +A A G+ ++ TAHG ++ ++ P+L L+
Sbjct: 229 GMMMMIRSMSPDVLIVDEIGRPEDAEAVIEALHAGISVIATAHGSSVQDMRGRPALSGLL 288
>gi|240145623|ref|ZP_04744224.1| stage III sporulation protein AA [Roseburia intestinalis L1-82]
gi|257202285|gb|EEV00570.1| stage III sporulation protein AA [Roseburia intestinalis L1-82]
Length = 318
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 198 RVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLAD-----DHMKRV 249
RV G AE I ++ G SI L++ PG GKTT +R+ R L++ + MK +
Sbjct: 133 RVAHEKKGCAEKILPFLKDGESIYNTLLVSKPGAGKTTCLRDCIRSLSNGKEGWEGMK-I 191
Query: 250 VIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTEL 308
+VD +EI +P + +G R V + + M+ + + P+ I +DE+G +
Sbjct: 192 CVVDERSEIAACHLGIPQNDMGI--RTDVLSGCGKSEGMMLMLRSMSPQIIAVDELGGKK 249
Query: 309 EALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
+ A A GV+++GT H T++ + + P L+
Sbjct: 250 DFQAVEQAACSGVRILGTVHADTVEELWEKPYLK 283
>gi|291536399|emb|CBL09511.1| stage III sporulation protein AA [Roseburia intestinalis M50/1]
Length = 318
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 198 RVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLAD-----DHMKRV 249
RV G AE I ++ G SI L++ PG GKTT +R+ R L++ + MK +
Sbjct: 133 RVAHEKKGCAEKILPFLKDGESIYNTLLVSKPGAGKTTCLRDCIRSLSNGKEGWEGMK-I 191
Query: 250 VIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTEL 308
+VD +EI +P + +G R V + + M+ + + P+ I +DE+G +
Sbjct: 192 CVVDERSEIAACHLGIPQNDMGI--RTDVLSGCGKSEGMMLMLRSMSPQIIAVDELGGKK 249
Query: 309 EALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
+ A A GV+++GT H T++ + + P L+
Sbjct: 250 DFQAVEQAACSGVRILGTVHADTVEELWEKPYLK 283
>gi|414154684|ref|ZP_11411001.1| Stage III sporulation protein AA [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
gi|411453515|emb|CCO08905.1| Stage III sporulation protein AA [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
Length = 337
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 16/201 (7%)
Query: 155 EDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAE-IICDL 213
E+L+H +R GI + + + G R+ RA+ G A+ ++ L
Sbjct: 104 EELRHGFIT---LPGGHRVGITGKVLTDQGVVRHIKYISGFNLRISRAIKGVADRVLPYL 160
Query: 214 VEGGGSI---LVIGPPGVGKTTLIREIARMLADD------HMKRVVIVDTSNEIGGDG-D 263
+ G +++ PP GKTTL+R++ R L++ V +VD +EI G
Sbjct: 161 ISPTGKFYHTVLVSPPRCGKTTLLRDLVRRLSEGIPELGWPGSNVGVVDERSEIAGCYRG 220
Query: 264 VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQL 323
+P +G R V + + + M+ + + P I DEIG + A + GV++
Sbjct: 221 IPQQDVGP--RTDVLDACPKAAGMMMLLRSMGPAVIATDEIGRREDVAALEEVLHAGVKV 278
Query: 324 VGTAHGMTIDNIVKNPSLQIL 344
+ T HG ++ + P+LQ L
Sbjct: 279 LTTVHGGSLAELADRPALQYL 299
>gi|83590379|ref|YP_430388.1| hypothetical protein Moth_1536 [Moorella thermoacetica ATCC 39073]
gi|83573293|gb|ABC19845.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073]
Length = 350
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 29/195 (14%)
Query: 194 GLTCRVGRAVAGSAE-IICDLVEGGGSI--LVIGPPGVGKTTLIREIARMLADD--HMK- 247
GL R+ R + G A +I L+EGG + L++ PP GKTTL+R++ R+L+ +K
Sbjct: 149 GLNLRLARDIPGCARSLIPYLLEGGRPLHTLILSPPRCGKTTLLRDLIRLLSTGVPELKF 208
Query: 248 ---RVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
V +VD +EI G VP +G R V + + + M+ + + PE I DE
Sbjct: 209 SGVNVGVVDERSEIAGCWLGVPQLEVG--PRTDVLDRCPKAAGMLMLLRSMGPEVIATDE 266
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV-----------------G 346
IG E A + GV ++ + H +++ + P L+ G
Sbjct: 267 IGRPEELAALQDVLHAGVTMLASVHAGSLEELQHRPGWGPLLKQGFWQRLVLLGRTLGPG 326
Query: 347 GIESVTLGDEEAKKR 361
IE V GD KR
Sbjct: 327 TIEGVFSGDHRTLKR 341
>gi|149183869|ref|ZP_01862262.1| stage III sporulation protein AA [Bacillus sp. SG-1]
gi|148848430|gb|EDL62687.1| stage III sporulation protein AA [Bacillus sp. SG-1]
Length = 309
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 17/173 (9%)
Query: 181 RISAIRNRKMQVIGLTCRVGR-AVAGSAEIICDLVEG-GGSILVIGPPGVGKTTLIREIA 238
++ AIR+ + RV R A+ +A +I L + ++IG P GKTT++R+IA
Sbjct: 102 KVKAIRH----LASFNIRVAREAIGIAAPLIPSLYKNRWKHTMIIGAPQTGKTTMLRDIA 157
Query: 239 RMLADDHMK--------RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIE 289
R+++ + +V IVD +EI G VP G R+ V + + M+
Sbjct: 158 RIVSTGFPEESIPIPPYKVGIVDERSEIAGCVHGVPQLQFGP--RIDVLDACPKAEGMMM 215
Query: 290 AVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
+ + P+ II+DEIG + A G+ L+ T HG +++ I K P L+
Sbjct: 216 LIRSMSPDVIIVDEIGRREDGQAILEAVNAGITLIMTTHGHSLEEISKRPYLK 268
>gi|339629557|ref|YP_004721200.1| hypothetical protein TPY_3305 [Sulfobacillus acidophilus TPY]
gi|379007324|ref|YP_005256775.1| hypothetical protein [Sulfobacillus acidophilus DSM 10332]
gi|339287346|gb|AEJ41457.1| hypothetical protein TPY_3305 [Sulfobacillus acidophilus TPY]
gi|361053586|gb|AEW05103.1| hypothetical protein Sulac_1606 [Sulfobacillus acidophilus DSM
10332]
Length = 292
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 113/275 (41%), Gaps = 28/275 (10%)
Query: 102 ELFLELLPSRMRREL--CMHRELGDLIEVVMDLGRKPLARFPSGDW--VISEQI---VKH 154
+L + LP+ R+ L H L EV LGR P+ + W +++ ++ V
Sbjct: 3 QLPWQWLPNPWRQALMDLPHELQTSLEEVRFRLGR-PVVLYGGHGWQPLVAPKVPERVTQ 61
Query: 155 EDLKHAISKVGDFS-----DDNRSGIDR--SLHRI----------SAIRNRKMQVIGLTC 197
DL + + DFS ++ R G HR+ S I + V GL
Sbjct: 62 ADLNRIVDILADFSLYARLEELRQGFLTLPGGHRVGLAGYAVGEGSQIATLR-AVTGLNF 120
Query: 198 RVGRAVAGSAEIICDLVEG-GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN 256
R RA + + V GS L+ GPP GKTT +R++ R+ ++ + RVV++D
Sbjct: 121 RRARAFTDIGLSVMEAVGSPYGSWLLAGPPRSGKTTFLRDLIRLWSNRGL-RVVVIDERL 179
Query: 257 EIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI 316
EI G V + + + A+ P+ I +DEIG+ E A S
Sbjct: 180 EIAGGSQSEGFSFDVGLHTDVLEAWPKLAGISVAIRTLGPDVIAVDEIGSVDELAAVSRA 239
Query: 317 AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESV 351
Q GV ++ T H ++ P Q ++V
Sbjct: 240 RQAGVTVLATVHARDWHDLEMRPEWQPFWSAWDAV 274
>gi|317128413|ref|YP_004094695.1| stage III sporulation protein AA [Bacillus cellulosilyticus DSM
2522]
gi|315473361|gb|ADU29964.1| stage III sporulation protein AA [Bacillus cellulosilyticus DSM
2522]
Length = 310
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 195 LTCRVGRAVAGSAEIICDLVEGGGS---ILVIGPPGVGKTTLIREIARMLADDHMKR--- 248
R+ R G A ++ G+ L+IGPP GKTTL+R++AR ++ R
Sbjct: 117 FNIRIARQKQGVAYAYLPYIQRRGNWCHTLIIGPPKSGKTTLLRDLAREISIGSKSRKIE 176
Query: 249 ---VVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
V I+D +EI G VP G ++ + + + ++ + + PE +I+DEI
Sbjct: 177 PKNVGIIDERSEIAGSVKGVPQHDFGV--KIDILDACPKAEGLMMMIRSMSPEVLIVDEI 234
Query: 305 GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
G + + A GV + + HG ++++ P++ L+
Sbjct: 235 GRKEDCEAIMEAVHAGVTIFASVHGENLNDVKSRPTIARLI 275
>gi|302389879|ref|YP_003825700.1| stage III sporulation protein AA [Thermosediminibacter oceani DSM
16646]
gi|302200507|gb|ADL08077.1| stage III sporulation protein AA [Thermosediminibacter oceani DSM
16646]
Length = 341
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 13/164 (7%)
Query: 194 GLTCRVGRAVAGSA-EIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLADDHMK-- 247
G R+ R V G+A E + +++ G L ++ PP GKTTL+R++ R L+ + +
Sbjct: 136 GFNIRIAREVLGAADEALRFVIDEKGEFLNTMILSPPKAGKTTLLRDLIRQLSSGNPRLG 195
Query: 248 ----RVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
+V +VD +EI + VP + +G R V + + ++ + + P+ I D
Sbjct: 196 LKGFKVGVVDERSEIACCYEGVPQNDVGI--RTDVLDGCPKARGIMMLLRSMSPDIIATD 253
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVG 346
EIG + A GV+L+ TAHG ++++ + P+L+ L+G
Sbjct: 254 EIGRTEDVEAMEEALNAGVKLLTTAHGADLEDVGRRPTLRKLIG 297
>gi|336234728|ref|YP_004587344.1| stage III sporulation protein AA [Geobacillus thermoglucosidasius
C56-YS93]
gi|335361583|gb|AEH47263.1| stage III sporulation protein AA [Geobacillus thermoglucosidasius
C56-YS93]
Length = 308
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 22/197 (11%)
Query: 191 QVIGLTCRVGRAVAGSAEIICDLVEGG--GSILVIGPPGVGKTTLIREIARMLADDHMKR 248
V R+ + G AE + V G + ++IG P GKTTL+R+ ARM++ + R
Sbjct: 108 HVTSFNIRIAKQKIGIAEPLVPYVYDGRWHNTMIIGSPQTGKTTLLRDAARMISTGILAR 167
Query: 249 ------VVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIII 301
V IVD +EI G +P +G R+ V + + M+ + + P+ +I+
Sbjct: 168 HIPSQKVGIVDERSEIAGCVKGIPQFQLGN--RVDVLDACPKAEGMMMMIRSMSPDVLIV 225
Query: 302 DEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKR 361
DEIG + A GV + T HG ++++ P+L+ ++ ++ +R
Sbjct: 226 DEIGRSEDGEAILEAVNAGVCIWTTVHGRNRKDVLQRPTLRPIM---------EQGVFER 276
Query: 362 KVQKTILERKGPPTFTC 378
V+ T +GP T C
Sbjct: 277 FVELT--NERGPGTVRC 291
>gi|310642679|ref|YP_003947437.1| stage III sporulation protein aa [Paenibacillus polymyxa SC2]
gi|386041735|ref|YP_005960689.1| stage III sporulation protein AA [Paenibacillus polymyxa M1]
gi|309247629|gb|ADO57196.1| Stage III sporulation protein AA [Paenibacillus polymyxa SC2]
gi|343097773|emb|CCC85982.1| stage III sporulation protein AA [Paenibacillus polymyxa M1]
Length = 331
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 195 LTCRVGRAVAGSAEIICDLVEGGGS-----ILVIGPPGVGKTTLIREIARMLADDHMK-- 247
R+ RA+ G A+ I V S L++ PP GKTTL+R++AR L+ MK
Sbjct: 123 FNVRIARAIPGIADRILPYVADRKSGMIRHTLILSPPQHGKTTLLRDLARQLSYGGMKSN 182
Query: 248 -------RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETI 299
+V I+D +EI G +P +G R + + + M+ + + P+ +
Sbjct: 183 GGRRNGLKVGIIDERSEIAGSHKGIPGFDVGP--RTDILDGCPKAEGMMMMIRSMSPDVL 240
Query: 300 IIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTL 353
I+DEIG +A A G+ ++ +AHG + + + L G E L
Sbjct: 241 IVDEIGRPEDAEAVREALHAGIAVIASAHGRDVAEMASRSAFAGLATGQELFQL 294
>gi|333924296|ref|YP_004497876.1| stage III sporulation protein AA [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333749857|gb|AEF94964.1| stage III sporulation protein AA [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 323
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
Query: 185 IRNRKMQVIGLTCRVGRAVAGSAE-IICDLVEGGGSI---LVIGPPGVGKTTLIREIARM 240
++N K + G R+ RA+ G A+ ++ L+ G +++ PP GKTTL+R++ R
Sbjct: 118 VKNIKY-IAGFNFRISRALVGVADKVLPYLISPEGRFYHTMLVSPPRCGKTTLLRDLVRR 176
Query: 241 LADDHMK------RVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293
L++ + V +VD +EI G VP IG R V + + + M+ + +
Sbjct: 177 LSEGVPELGLPGMTVGVVDERSEIAGCYRGVPQRDIGP--RTDVLDACPKAAGMMMLLRS 234
Query: 294 HMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
P+ I DEIG + A + GV+++ T HG +++ + P+LQ L
Sbjct: 235 MGPQVIATDEIGRPEDIAALEEMVNAGVKVLTTVHGASLEELTDRPALQYL 285
>gi|420156698|ref|ZP_14663538.1| putative stage III sporulation protein AA [Clostridium sp. MSTE9]
gi|394756708|gb|EJF39767.1| putative stage III sporulation protein AA [Clostridium sp. MSTE9]
Length = 337
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 73/138 (52%), Gaps = 10/138 (7%)
Query: 198 RVGRAVAGSAEIICDLV--EGGGSILVIGPPGVGKTTLIREIARMLADDHM---KRVVIV 252
RV R ++G+A+ + LV E +L+ G P GKTT++R++AR LA +++ +V
Sbjct: 134 RVARQISGAADEVLSLVGEEIVQGVLLAGAPSTGKTTILRDLARQLAGGGTLPPRKITVV 193
Query: 253 DTSNEIGG--DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEA 310
D E+ G GD + +G + + + +++A+ + PE I+ DE+G+E E
Sbjct: 194 DERGELAGVYRGDAQND-LGCC--CDILDGYPKSQGILQAIRSLSPEVILCDELGSERET 250
Query: 311 LAASTIAQRGVQLVGTAH 328
A + GV L+ + H
Sbjct: 251 AAVEEVVNAGVSLIVSVH 268
>gi|325661685|ref|ZP_08150308.1| stage III sporulation protein AA [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471938|gb|EGC75153.1| stage III sporulation protein AA [Lachnospiraceae bacterium
4_1_37FAA]
Length = 321
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHM----KRVVIVDTSNEIGGDGDVPHSGIGRAR--- 273
L+I PPG GKTTL+R++ R ++D + + V +VD +E+G H G+ +
Sbjct: 152 LIISPPGCGKTTLLRDLIRQISDGNRWIQGESVGVVDERSELG----ACHLGVAQNELGI 207
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R + + + M+ + + P+ + +DEIG + A G +++ T HG ++
Sbjct: 208 RTDILDGCPKAEGMLMLIRSMAPKILAVDEIGAPEDIHAMEYAMHCGCRMLATVHGTSMA 267
Query: 334 NIVKNPSLQILV 345
+ K P LQ L+
Sbjct: 268 EVQKKPVLQQLI 279
>gi|431794356|ref|YP_007221261.1| stage III sporulation protein AA [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784582|gb|AGA69865.1| stage III sporulation protein AA [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 349
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 85/162 (52%), Gaps = 15/162 (9%)
Query: 195 LTCRVGRAVAGSAE-IICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADD------ 244
L RV +AV G AE I+ L++ GS+ L++ PP GKTTL+R++ + ++D
Sbjct: 150 LNIRVAKAVEGKAEHILPKLLKRDGSLYHTLILSPPRAGKTTLLRDLIQKISDGSPTLHT 209
Query: 245 HMKRVVIVDTSNEIGGDGD-VPHSGIG-RARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
+ V +VD E+ G +P +G R + M +++I ++ P+ I +D
Sbjct: 210 QGQTVGVVDERRELAGMWQGIPAYNLGYRTDILDGCPKRMGINMLIRSMS---PQVIAVD 266
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
E+G + A + GV+++ TAH + ++ + P+L++L
Sbjct: 267 ELGHPEDVEAVLDALRTGVKILSTAHALNLEEALSRPTLRVL 308
>gi|303287636|ref|XP_003063107.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455743|gb|EEH53046.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 140
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 593 EEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVES-YQLAAENSGTELNPRL 651
EE DALEEVR+A+E +VIP E VELLPR + Q E+++ Y+L E G R+
Sbjct: 72 EEADALEEVRMAVEQLVIPHQEPVELLPRADRVRRMQAEVIQGEYRLKHEECGDGAAARI 131
Query: 652 QILP 655
+ILP
Sbjct: 132 KILP 135
>gi|354582540|ref|ZP_09001441.1| stage III sporulation protein AA [Paenibacillus lactis 154]
gi|353198832|gb|EHB64298.1| stage III sporulation protein AA [Paenibacillus lactis 154]
Length = 332
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 17/169 (10%)
Query: 192 VIGLTCRVGRAVAGSA-EIICDLVEGGGS----ILVIGPPGVGKTTLIREIARMLADDHM 246
+ G R+ + + G+A E++ L++ L++ PP GKTTL+R++AR ++
Sbjct: 122 ISGFNVRIAKEIRGAADEMLPHLLDRKRKRVMHTLILSPPQHGKTTLLRDLARQISYGQW 181
Query: 247 K---------RVVIVDTSNEIGG-DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMP 296
+V IVD +EI G VP +G R V + + M+ + + P
Sbjct: 182 GAGTVRWPGMKVGIVDERSEIAGCQRGVPGFDVGP--RTDVLDGCPKAEGMMMMIRSMSP 239
Query: 297 ETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+ +I+DEIG +A A G+ ++ TAHG ++ ++ P+L L+
Sbjct: 240 DVLIVDEIGRAEDAEAVVEALHAGISVIATAHGSSVQDMRGRPALSGLI 288
>gi|323702758|ref|ZP_08114418.1| stage III sporulation protein AA [Desulfotomaculum nigrificans DSM
574]
gi|323532275|gb|EGB22154.1| stage III sporulation protein AA [Desulfotomaculum nigrificans DSM
574]
Length = 323
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 13/162 (8%)
Query: 194 GLTCRVGRAVAGSAE-IICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMK-- 247
G R+ RA+ G A+ ++ L+ G +++ PP GKTTL+R++ R L++ +
Sbjct: 126 GFNFRISRALVGVADKVLPYLISPEGRFYHTMLVSPPRCGKTTLLRDLVRRLSEGVPELG 185
Query: 248 ----RVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
V +VD +EI G VP IG R V + + + M+ + + P+ I D
Sbjct: 186 LPGMTVGVVDERSEIAGCYRGVPQRDIGP--RTDVLDACPKAAGMMMLLRSMGPQVIATD 243
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
EIG + A + GV+++ T HG +++ + P+LQ L
Sbjct: 244 EIGRPEDIAALEEMVNAGVKVLTTVHGASLEELTDRPALQYL 285
>gi|160880656|ref|YP_001559624.1| stage III sporulation protein AA [Clostridium phytofermentans ISDg]
gi|160429322|gb|ABX42885.1| stage III sporulation protein AA [Clostridium phytofermentans ISDg]
Length = 322
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 16/165 (9%)
Query: 195 LTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMKR--- 248
+ R+ V G A ++ + SI L+I PPG GKTTL+R++ R L+D
Sbjct: 126 INIRLSHQVKGCANLVMPYILRDNSIYHTLIISPPGCGKTTLLRDVIRQLSDGEQDTKGG 185
Query: 249 -------VVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETII 300
V +VD +EI P + +G R V + + M+ + + P +
Sbjct: 186 SYREGIPVGVVDERSEIAACYMGTPQNDLG--IRTDVLDCCPKAKGMMLLIRSMSPSVLA 243
Query: 301 IDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+DEIG + A G++++ T HG TID + P L L+
Sbjct: 244 VDEIGLGEDIEAIHYAMGCGIKMIATVHGGTIDEVRDKPLLGELI 288
>gi|291538735|emb|CBL11846.1| stage III sporulation protein AA [Roseburia intestinalis XB6B4]
Length = 269
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 198 RVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLAD-----DHMKRV 249
RV G AE I ++ G SI L++ PG GKTT +R+ R L++ + MK +
Sbjct: 84 RVAHEKKGCAEKILPFLKDGESIYNTLLVSKPGAGKTTCLRDCIRSLSNGKEGWEGMK-I 142
Query: 250 VIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTEL 308
+VD +EI +P + +G R V + + M+ + + P+ I +DE+G +
Sbjct: 143 CVVDERSEIAACHLGIPQNDMGI--RTDVLSGCGKSEGMMLMLRSMSPQIIAVDELGGKK 200
Query: 309 EALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
+ A A GV+++GT H T++ + + P L+
Sbjct: 201 DFQAVEQAACSGVRILGTVHADTVEELWEKPYLK 234
>gi|219669535|ref|YP_002459970.1| stage III sporulation protein AA [Desulfitobacterium hafniense
DCB-2]
gi|219539795|gb|ACL21534.1| stage III sporulation protein AA [Desulfitobacterium hafniense
DCB-2]
Length = 361
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 15/166 (9%)
Query: 191 QVIGLTCRVGRAVAGSAEIIC-DLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDH- 245
+ L R+ +AV G AE+I L+ G++ L++ PP GKTTL+R++ R L+D
Sbjct: 156 HISALNIRLAKAVEGKAELILPKLLTKEGTLHHTLILSPPRAGKTTLLRDLIRRLSDGSP 215
Query: 246 -----MKRVVIVDTSNEIGGDGD-VPHSGIG-RARRMQVPNVNMQHSVMIEAVENHMPET 298
+ V +VD E+ G +P +G R + M +++I ++ P+
Sbjct: 216 ALNLPGQTVGVVDERRELAGMWQGIPAYNLGCRTDILDGCPKRMGINMLIRSMA---PQV 272
Query: 299 IIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
+ +DE+G + A + GV+++ TAH T+ ++ P+L+ L
Sbjct: 273 VAVDELGHPEDVEAVLDALRTGVKILSTAHAATMSEALRRPTLKAL 318
>gi|375309142|ref|ZP_09774423.1| stage III sporulation protein AA [Paenibacillus sp. Aloe-11]
gi|375078451|gb|EHS56678.1| stage III sporulation protein AA [Paenibacillus sp. Aloe-11]
Length = 331
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 17/174 (9%)
Query: 195 LTCRVGRAVAGSAEIICDLV--EGGGSI---LVIGPPGVGKTTLIREIARMLADDHMK-- 247
R+ RA+ G A+ I V + G I L++ PP GKTTL+R++AR L+ +
Sbjct: 123 FNVRIARAIPGIADRILPYVADQKSGKIRHTLILSPPQHGKTTLLRDLARQLSYGGVGSN 182
Query: 248 -------RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETI 299
+V I+D +EI G +P +G R V + + M+ + + P+ +
Sbjct: 183 GGRRSGLKVGIIDERSEIAGSHKGIPGFDVGP--RTDVLDGCPKAEGMMMMIRSMSPDVL 240
Query: 300 IIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTL 353
I+DEIG +A A G+ ++ +AHG + + +L L G E L
Sbjct: 241 IVDEIGRPEDAEAVREALHAGIAVIASAHGRDVAEMATRSALAGLTAGQELFQL 294
>gi|423073519|ref|ZP_17062258.1| stage III sporulation protein AA [Desulfitobacterium hafniense DP7]
gi|361855597|gb|EHL07560.1| stage III sporulation protein AA [Desulfitobacterium hafniense DP7]
Length = 361
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 15/166 (9%)
Query: 191 QVIGLTCRVGRAVAGSAEIIC-DLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDH- 245
+ L R+ +AV G AE+I L+ G++ L++ PP GKTTL+R++ R L+D
Sbjct: 156 HISALNIRLAKAVEGKAELILPRLLTKEGTLHHTLILSPPRAGKTTLLRDLIRRLSDGSP 215
Query: 246 -----MKRVVIVDTSNEIGGDGD-VPHSGIG-RARRMQVPNVNMQHSVMIEAVENHMPET 298
+ V +VD E+ G +P +G R + M +++I ++ P+
Sbjct: 216 ALNLPGQTVGVVDERRELAGMWQGIPAYNLGCRTDILDGCPKRMGINMLIRSMA---PQV 272
Query: 299 IIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
+ +DE+G + A + GV+++ TAH T+ ++ P+L+ L
Sbjct: 273 VAVDELGHPEDVEAVLDALRTGVKILSTAHAATMSEALRRPTLKAL 318
>gi|251796305|ref|YP_003011036.1| stage III sporulation protein AA [Paenibacillus sp. JDR-2]
gi|247543931|gb|ACT00950.1| stage III sporulation protein AA [Paenibacillus sp. JDR-2]
Length = 350
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 194 GLTCRVGRAVAGSAE-IICDLVEGG----GSILVIGPPGVGKTTLIREIARMLADDHM-- 246
G R+ R V GSA ++ L++ S L++ PP GKTT++R+IAR ++ H
Sbjct: 124 GFNIRIAREVVGSARNLLPKLLDKNRKTVHSTLILAPPQQGKTTIVRDIARSISYGHWGL 183
Query: 247 ---------KRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMP 296
++V IVD +EI +P +G R + + + M+ + + P
Sbjct: 184 FENAAGWAGRKVGIVDERSEIAACVRGIPTFDVGP--RTDIMDACPKAEGMMMLLRSMSP 241
Query: 297 ETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
E +I DEIG + A + G+ ++ TAH + + P LQ L+
Sbjct: 242 EVVIADEIGRPEDGEAIREASHAGISVIATAHAYDLQDAKGRPVLQQLL 290
>gi|283797254|ref|ZP_06346407.1| stage III sporulation protein AA [Clostridium sp. M62/1]
gi|291075104|gb|EFE12468.1| stage III sporulation protein AA [Clostridium sp. M62/1]
Length = 427
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADD--HM--KRVVIVDTSNEIGGDGDVPHSGIGR---A 272
+L++ PP GKTTL+R++ R ++D +M K V IVD +EI GI +
Sbjct: 210 VLILSPPCCGKTTLLRDLVRKISDGCGYMEGKTVGIVDERSEIA----ACFQGIAQNDVG 265
Query: 273 RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTI 332
R V + + M+ + + P+ + +DEIG + A A G L+ TAHG +
Sbjct: 266 MRSDVLDGCPKAQGMMMLIRSMAPQVLAVDEIGGREDLEALRYAAGCGCSLIATAHGTSY 325
Query: 333 DNIVKNPSLQIL 344
++ P+ + L
Sbjct: 326 QDVEAKPAFREL 337
>gi|89895121|ref|YP_518608.1| hypothetical protein DSY2375 [Desulfitobacterium hafniense Y51]
gi|89334569|dbj|BAE84164.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 330
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 15/162 (9%)
Query: 195 LTCRVGRAVAGSAEIIC-DLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDH----- 245
L R+ +AV G AE+I L+ G++ L++ PP GKTTL+R++ R L+D
Sbjct: 129 LNIRLAKAVEGKAELILPRLLTKEGTLHHTLILSPPRAGKTTLLRDLIRRLSDGSPALNL 188
Query: 246 -MKRVVIVDTSNEIGGDGD-VPHSGIG-RARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
+ V +VD E+ G VP +G R + M +++I ++ P+ + +D
Sbjct: 189 PGQTVGVVDERRELAGMWQGVPAYNLGCRTDILDGCPKRMGINMLIRSMA---PQVVAVD 245
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
E+G + A + GV+++ TAH T+ ++ P+L+ L
Sbjct: 246 ELGHPEDVEAVLDALRTGVKILSTAHAATMSEALRRPTLKAL 287
>gi|307106237|gb|EFN54483.1| hypothetical protein CHLNCDRAFT_135151 [Chlorella variabilis]
Length = 316
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 29/146 (19%)
Query: 539 LPVFVIKSNTMAQMVKAVRMILGMES-----FGTISKLPNKSTSDIEIEDDAPKRKPTLE 593
+PV+ IK+ + + +V+AVR +LG++ F ++LP + R
Sbjct: 4 IPVYSIKTASASNLVRAVRTLLGIDPSPGAMFAGDAELPAAADPRSRTSTSRTLRAEASI 63
Query: 594 EI------------------------DALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQ 629
+ DALEE RLA E IVIP + VELLPR I+ Q
Sbjct: 64 ALAAAAEAGSITSITSSSSSGGANAQDALEEARLAAEQIVIPRCQPVELLPRDLRIIDLQ 123
Query: 630 LELVESYQLAAENSGTELNPRLQILP 655
++L+E L E G+ + RL++LP
Sbjct: 124 VQLMEGLGLPYEVVGSAASLRLRVLP 149
>gi|158320654|ref|YP_001513161.1| sporulation stage III protein AA [Alkaliphilus oremlandii OhILAs]
gi|158140853|gb|ABW19165.1| Sporulation stage III protein AA [Alkaliphilus oremlandii OhILAs]
Length = 351
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 25/189 (13%)
Query: 159 HAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAE-IICDLVEGG 217
H I VG DN +GI R+L S GL R+ R G A ++ ++
Sbjct: 125 HRIGIVGKVLLDN-NGI-RTLKNYS----------GLNIRISREKLGVATGVLPHIINAK 172
Query: 218 GSI---LVIGPPGVGKTTLIREIARMLADD--HMK----RVVIVDTSNEIGGDGD-VPHS 267
G + L++ PP GKTTL+R++ RM++ HM +V +VD +E+G VP +
Sbjct: 173 GELMNTLIVSPPQCGKTTLLRDVIRMVSTGVPHMNFRGLKVGVVDERSELGACFQGVPQN 232
Query: 268 GIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTA 327
+G R + + + ++ + P+ I DEIG E + +A G++L+ T
Sbjct: 233 DLGP--RTDILDSCPKAEGIMMLIRAMSPQVIATDEIGREEDMIAIDEAIMAGIKLITTV 290
Query: 328 HGMTIDNIV 336
H +++NI+
Sbjct: 291 HSRSLENIL 299
>gi|78044260|ref|YP_360826.1| sporulation protein [Carboxydothermus hydrogenoformans Z-2901]
gi|77996375|gb|ABB15274.1| putative sporulation protein [Carboxydothermus hydrogenoformans
Z-2901]
Length = 315
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 15/162 (9%)
Query: 192 VIGLTCRVGRAVAGSAE-IICDLVEGGG---SILVIGPPGVGKTTLIREIARMLADDHMK 247
V + R+ R + G AE I+ L+ G + L++ PP GKTT++R++AR+ A+ +
Sbjct: 118 VCSINIRIAREIKGVAEKIVPYLINKNGEPVNTLILSPPRSGKTTMLRDLARIFANGSAQ 177
Query: 248 ------RVVIVDTSNEIGG--DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETI 299
V IVD +EI G+ P +G R V + + MI + + P+ I
Sbjct: 178 IGIPGIPVGIVDERSEIAACYKGE-PQLDVGI--RADVLDGCPKAQGMIILLRSMAPKLI 234
Query: 300 IIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSL 341
+ DEIG E + A +A GV + +AH +D++ K P
Sbjct: 235 VTDEIGREEDVGALIEVANAGVAVFTSAHARDMDDLKKRPRF 276
>gi|390453349|ref|ZP_10238877.1| stage III sporulation protein AA [Paenibacillus peoriae KCTC 3763]
Length = 331
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 17/174 (9%)
Query: 195 LTCRVGRAVAGSAEIICDLV--EGGGSI---LVIGPPGVGKTTLIREIARMLADDHMK-- 247
R+ RA+ G A+ I V + G + L++ PP GKTTL+R++AR L+ +
Sbjct: 123 FNVRIARAIPGVADRILPYVADQKSGKVRHTLILSPPQHGKTTLLRDLARQLSYGGVGSN 182
Query: 248 -------RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETI 299
+V I+D +EI G +P +G R V + + M+ + + P+ +
Sbjct: 183 GGRRSGLKVGIIDERSEIAGSHKGIPGFDVGP--RTDVLDGCPKAEGMMMMIRSMSPDVL 240
Query: 300 IIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTL 353
I+DEIG +A A G+ ++ +AHG + + +L L G E L
Sbjct: 241 IVDEIGRPEDAEAVREALHAGIAVIASAHGRDVAEMATRSALAGLTAGQELFQL 294
>gi|153855227|ref|ZP_01996393.1| hypothetical protein DORLON_02407 [Dorea longicatena DSM 13814]
gi|149752226|gb|EDM62157.1| stage III sporulation protein AA [Dorea longicatena DSM 13814]
Length = 317
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 18/161 (11%)
Query: 198 RVGRAVAGSAE-----IICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----R 248
RV + G A+ I+C+ V L++ PPG GKTT++R++ R +++ +
Sbjct: 124 RVAHEMIGCADAVFPYIVCNRVLC--HTLIVSPPGCGKTTMLRDLIRQISEGNSWIPGLA 181
Query: 249 VVIVDTSNEIGGDGDVPHSGIGRAR---RMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
V +VD +EIGG + G+ + R + + + MI + + P+ I +DEIG
Sbjct: 182 VGVVDERSEIGG----CYMGVAQNHLGIRTDILDGCPKAEGMIMLIRSMGPQVIAVDEIG 237
Query: 306 TELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVG 346
T + A G +++ T H +++ + K P ++G
Sbjct: 238 TPEDVHAIEYAMHCGCKMLATVHAESMEELRKKPLFNRMIG 278
>gi|225573674|ref|ZP_03782429.1| hypothetical protein RUMHYD_01870 [Blautia hydrogenotrophica DSM
10507]
gi|225038967|gb|EEG49213.1| stage III sporulation protein AA [Blautia hydrogenotrophica DSM
10507]
Length = 311
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 195 LTCRVGRAVAGSAEIICDLVEGG--GSILVIGPPGVGKTTLIREIARMLADDHM----KR 248
L R+ G A+ + V G L+I PP GKTTL+R++ R +++ +
Sbjct: 125 LNLRLAHEKKGCADSVFSWVYGKEVAHTLIISPPRCGKTTLLRDLIRQISNGTSSCPGRT 184
Query: 249 VVIVDTSNEIGGDGDVPHSGIGR---ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
V +VD +EI G + GI + R V + + M+ + + P+ + +DE+G
Sbjct: 185 VGVVDERSEIAG----CYQGIAQNDVGIRTDVLDGCPKAEGMMMLIRSMAPQVVAVDELG 240
Query: 306 TELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+ A ++ G +L+ T HG +++++ + P Q L+
Sbjct: 241 DYEDIHAIESVVHCGCKLLATVHGNSLEDLRRKPLFQRLM 280
>gi|452992565|emb|CCQ95992.1| Stage III sporulation protein AA [Clostridium ultunense Esp]
Length = 324
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 13/162 (8%)
Query: 195 LTCRVGRAVAGSAE----IICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK--- 247
L R+ R G +E I D L++ PP GKTT++R++ R+L++
Sbjct: 132 LNMRIAREKIGVSEKLIKYIIDFSHTIYDTLIVSPPQCGKTTILRDLIRILSNGSKDLGG 191
Query: 248 ---RVVIVDTSNEIGG-DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
+V ++D +E+ G +P IG R V + + I + P+ + +DE
Sbjct: 192 KGMKVGVIDERSELAGMYNGMPQFDIGL--RTDVLDGCNKKDGTIMLIRAMSPDIVAMDE 249
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
IG+ + A + GV+++ T HG T++++V SL++L+
Sbjct: 250 IGSINDVDAIHEALKAGVKIIATIHGSTLEDLVSKKSLRMLI 291
>gi|407473829|ref|YP_006788229.1| stage III sporulation protein AA [Clostridium acidurici 9a]
gi|407050337|gb|AFS78382.1| stage III sporulation protein AA [Clostridium acidurici 9a]
Length = 326
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 13/162 (8%)
Query: 195 LTCRVGRAVAG-SAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADD------ 244
+ R+ R V G S II +++ SI L+I PP GKTT++R++ R +++
Sbjct: 133 INIRIAREVMGASNHIIKYVIKNSHSIYNTLIISPPKCGKTTILRDLIRNISNGINSYNF 192
Query: 245 HMKRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
+V +VD +E+ G + P + +G R + + +H ++ + P+ I DE
Sbjct: 193 EGLKVGVVDERSELAGTYNGQPQNDLGY--RTDILDGCYKHDGIMILLRAMSPDVIATDE 250
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+G + A + GVQ++ T HG +D++ P+++ +V
Sbjct: 251 LGHPNDIKAIYEAMKGGVQIISTVHGANLDDVKNKPNIKDIV 292
>gi|348667946|gb|EGZ07771.1| hypothetical protein PHYSODRAFT_250107 [Phytophthora sojae]
Length = 296
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 125 LIEVVMDLGRKPLARFPSGDWVISEQ---IVKHEDLKHAISKVGD---FSDDNRSGIDRS 178
L++V +D+GR P V+ + V + + +S +G DDNR+GI R
Sbjct: 141 LVDVCLDVGRVPYVYTGKKQRVVLSKHGATVAKDTIDEILSNLGGEMRIGDDNRAGIGRQ 200
Query: 179 LHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICD 212
LHRIS +R++ +V GL RVGRA+ + ++ D
Sbjct: 201 LHRISVMRSKTDEVYGLPMRVGRALRNATCVLTD 234
>gi|392394445|ref|YP_006431047.1| stage III sporulation protein AA [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390525523|gb|AFM01254.1| stage III sporulation protein AA [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 359
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 15/166 (9%)
Query: 191 QVIGLTCRVGRAVAGSAEIIC-DLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDH- 245
+ L R+ +AV G AE+I L+ G++ L++ PP GKTTL+R++ R L+D
Sbjct: 154 HISALNIRLAKAVEGRAELILPKLLTKEGALHHTLILSPPRGGKTTLLRDLIRRLSDGSP 213
Query: 246 -----MKRVVIVDTSNEIGGDGD-VPHSGIG-RARRMQVPNVNMQHSVMIEAVENHMPET 298
+ V +VD E+ G +P +G R + M +++I ++ P+
Sbjct: 214 GLNLPGQTVGVVDERRELAGMWQGIPAYNLGCRTDILDGCPKRMGINMLIRSMA---PQV 270
Query: 299 IIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
+ +DE+G + A + GV+++ TAH +D +K P+L+ L
Sbjct: 271 VAVDELGHPEDVEAVLDALRTGVKILSTAHASNMDEALKRPTLRSL 316
>gi|317056392|ref|YP_004104859.1| AAA ATPase [Ruminococcus albus 7]
gi|315448661|gb|ADU22225.1| AAA ATPase [Ruminococcus albus 7]
Length = 298
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 191 QVIGLTCRVGRAVAGSAEIICDLVEGGG--SILVIGPPGVGKTTLIREIARMLADDHMKR 248
+ L R+ R + G A I D S+L+ G P GKTT +R++ R+ H R
Sbjct: 116 NITSLNIRIPREIKGCAGSIFDRFMSAAPRSLLIAGSPSSGKTTFLRDLTRLCG--HRYR 173
Query: 249 VVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307
++D EI G +P + IG V + + + AV P+ I+ DEIG+
Sbjct: 174 TSLIDERGEIAASVGGIPANDIGIM--TDVFDRYPRKEAVQTAVRVMSPQVIVCDEIGSA 231
Query: 308 LEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+ + G +L+ + H + +++ P++ LV
Sbjct: 232 EDITSLEYAVDSGAELIASCHCSGLSDLIHKPNISKLV 269
>gi|410667979|ref|YP_006920350.1| stage III sporulation protein AA [Thermacetogenium phaeum DSM
12270]
gi|409105726|gb|AFV11851.1| stage III sporulation protein AA [Thermacetogenium phaeum DSM
12270]
Length = 330
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 29/195 (14%)
Query: 195 LTCRVGRAVAGSAEIICDLV-----EGGGSILVIGPPGVGKTTLIREIARMLA----DDH 245
L R+ RAV GSA + V + L++ PP GKTTL+R+I R L+ + H
Sbjct: 132 LNFRIARAVPGSARPLLPYVLDFRNKRPYHTLLVSPPCAGKTTLLRDIIRSLSYGIPELH 191
Query: 246 MK--RVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
V +VD E+ VP +G R+ V + + + MI + + P+ I D
Sbjct: 192 FPALSVGVVDERCELAACYQGVPQHDLGP--RVDVLDRCPKAAGMIILLRSMAPQVIATD 249
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRK 362
EIG + A + GV ++ T H + + + + P LQ +V KR
Sbjct: 250 EIGRCEDINAIWEMLYTGVSILATVHASSWEELERRPYLQDVV-------------NKRV 296
Query: 363 VQKTIL--ERKGPPT 375
Q+ + RKGP T
Sbjct: 297 FQRYVFLSRRKGPGT 311
>gi|205374061|ref|ZP_03226861.1| mutants block sporulation after engulfment [Bacillus coahuilensis
m4-4]
Length = 294
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 9/128 (7%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK-----RVVIVDTSNEIGGD-GDVPHSGIGRARR 274
++IGPP GKTTL+R++AR ++ + + +V IVD +EI G VP +G R
Sbjct: 140 MIIGPPQSGKTTLLRDLARFVSSGNGQGIPSFKVGIVDERSEIAGCVKGVPQLELG--NR 197
Query: 275 MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDN 334
+ V + + M+ + + P+ +++DEIG + + A GV L+ + HG ++ +
Sbjct: 198 VDVLDGCPKVEGMMMLIRSMSPDVLVVDEIGRKEDGDAILEAVNAGVTLMMSIHGSSLQD 257
Query: 335 IVKNPSLQ 342
VKN LQ
Sbjct: 258 -VKNDRLQ 264
>gi|114566101|ref|YP_753255.1| stage III sporulation protein spoIIIAA [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|114337036|gb|ABI67884.1| stage III sporulation protein spoIIIAA [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 313
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 198 RVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMK----RVV 250
R+ R G A I + G+I L+I PP GKTT++R+IAR ++ +
Sbjct: 133 RLAREKKGCARTILPHIISTGTIVNTLIISPPRCGKTTILRDIARSISTGSSACPPHNIA 192
Query: 251 IVDTSNEIGGDGDVPHSGIGR---ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307
I+D +EI G H G+ + R V + + M+ A+ + P+ +I DEIG +
Sbjct: 193 IIDERSEIAGT----HRGLAQLDVGIRSDVLDACPKSWGMMMAIRSLSPQVLIADEIGRK 248
Query: 308 LEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+ A GV ++ + H ++ + K P ++ L+
Sbjct: 249 EDVEALQECVNAGVAVICSIHARNLEELSKRPLIKKLL 286
>gi|295695388|ref|YP_003588626.1| stage III sporulation protein AA [Kyrpidia tusciae DSM 2912]
gi|295410990|gb|ADG05482.1| stage III sporulation protein AA [Kyrpidia tusciae DSM 2912]
Length = 348
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 13/170 (7%)
Query: 189 KMQVIGLTCRVGRAVAGSAEIICDLVEGG----GSILVIGPPGVGKTTLIREIARMLADD 244
++ + GL R+ + V G + ++ + G S L++ PP GKTTL+R++A L+
Sbjct: 136 QVDITGLNFRIAKPVVGVSRVLAPWLIDGMCRPASTLILSPPQCGKTTLLRDLAYHLSIG 195
Query: 245 HMK------RVVIVDTSNEIGGDGDVPH-SGIGRARRMQVPNVNMQHSVMIEAVENHMPE 297
+V +VD +E+ G H +G R V + + M+ V + PE
Sbjct: 196 AWHPRVPPLKVAVVDERSELAGTFQGRHYHDLGP--RTDVLDGCPKAEGMMMMVRSMSPE 253
Query: 298 TIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGG 347
+I DE+G + A GV ++ +AH ++D+ P+L+ L+ G
Sbjct: 254 VLITDEVGGAADIAALMEAVGSGVVVLASAHAASLDDAESRPALRPLLEG 303
>gi|355672461|ref|ZP_09058391.1| stage III sporulation protein AA [Clostridium citroniae WAL-17108]
gi|354815162|gb|EHE99758.1| stage III sporulation protein AA [Clostridium citroniae WAL-17108]
Length = 328
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 198 RVGRAVAGSAEIICDLV--EGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------R 248
RV + G A+ + D + + + L+I PP GKTTL+R+I R +++ +
Sbjct: 134 RVAHEILGCADPVMDYLYMDRFLNTLIISPPRCGKTTLLRDIIRQVSNGRSRDRWIPGMS 193
Query: 249 VVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307
V +VD +E+ +P + +G R V + + M+ V P I +DEIG+
Sbjct: 194 VGVVDERSELAACYQGIPQNDLGV--RTDVLDCCPKSQGMMMLVRTMAPGVIAVDEIGSR 251
Query: 308 LEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV--GGIESVTLGDEEAKKRKVQK 365
+ A + G L T HG ++++I + P + L+ G E + L D V +
Sbjct: 252 QDMEAIEYVRNCGCSLAATIHGNSLEDIRQKPCMGELLAQGTFERLILLDSRGGPGHV-R 310
Query: 366 TILERKG 372
+I +R G
Sbjct: 311 SIWDRGG 317
>gi|329924766|ref|ZP_08279755.1| stage III sporulation protein AA [Paenibacillus sp. HGF5]
gi|328940431|gb|EGG36754.1| stage III sporulation protein AA [Paenibacillus sp. HGF5]
Length = 332
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 21/180 (11%)
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSAE-IICDLVEGGGS----ILVIGPPGVGKTTLIR 235
R+ IR+ + G R+ + + G+A+ I+ L++ L++ PP GKTTL+R
Sbjct: 115 RVEHIRD----ISGFNVRIAKEIQGAADDILPHLLDRKRKRVMHSLILSPPQQGKTTLLR 170
Query: 236 EIARMLADDHMK---------RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHS 285
++AR ++ +V I+D +EI G VP +G R V + +
Sbjct: 171 DLARQISYGKWGNSSVHWPGMKVGIIDERSEIAGCLRGVPGFDVGP--RTDVMDGCPKAE 228
Query: 286 VMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
M+ + + P+ +I+DEIG +A A G+ ++ TAHG ++ ++ P+L L+
Sbjct: 229 GMMMMIRSMSPDVLIVDEIGRPEDAEAVIEALHAGISVIATAHGSSVQDMRGRPALSGLL 288
>gi|261405938|ref|YP_003242179.1| stage III sporulation protein AA [Paenibacillus sp. Y412MC10]
gi|261282401|gb|ACX64372.1| stage III sporulation protein AA [Paenibacillus sp. Y412MC10]
Length = 332
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 21/180 (11%)
Query: 181 RISAIRNRKMQVIGLTCRVGRAVAGSAE-IICDLVEGGGS----ILVIGPPGVGKTTLIR 235
R+ IR+ + G R+ + + G+A+ I+ L++ L++ PP GKTTL+R
Sbjct: 115 RVEHIRD----ISGFNVRIAKEIQGAADDILPHLLDRKRKRVMHSLILSPPQQGKTTLLR 170
Query: 236 EIARMLADDHMK---------RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHS 285
++AR ++ +V I+D +EI G VP +G R V + +
Sbjct: 171 DLARQISYGKWGNSSVHWPGMKVGIIDERSEIAGCLRGVPGFDVGP--RTDVMDGCPKAE 228
Query: 286 VMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
M+ + + P+ +I+DEIG +A A G+ ++ TAHG ++ ++ P+L L+
Sbjct: 229 GMMMMIRSMSPDVLIVDEIGRPEDAEAVIEALHAGISVIATAHGSSVQDMRGRPALSGLL 288
>gi|218289649|ref|ZP_03493869.1| stage III sporulation protein AA [Alicyclobacillus acidocaldarius
LAA1]
gi|218240299|gb|EED07482.1| stage III sporulation protein AA [Alicyclobacillus acidocaldarius
LAA1]
Length = 335
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 219 SILVIGPPGVGKTTLIREIARMLA------DDHMKRVVIVDTSNEIGGDGD-VPHSGIGR 271
S L++ PP GKTTL+R++AR + DDH +V ++D +EI G D VP +G
Sbjct: 165 SSLIVSPPQCGKTTLVRDVARRFSYGDFAPDDHGLKVAVIDERSEIAGSVDGVPQFDLGP 224
Query: 272 ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
R V + + M+ A+ + P ++ DEIG
Sbjct: 225 --RADVLDGCPKAEGMMMAIRSLSPHVVVTDEIG 256
>gi|166030404|ref|ZP_02233233.1| hypothetical protein DORFOR_00065 [Dorea formicigenerans ATCC
27755]
gi|166029762|gb|EDR48519.1| stage III sporulation protein AA [Dorea formicigenerans ATCC 27755]
Length = 316
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 221 LVIGPPGVGKTTLIREIARMLAD--DHMK--RVVIVDTSNEIGGDGDVPHSGIGRAR--- 273
L++ PPG GKTTL+R++ R +++ + +K V +VD +EI G + G+ +
Sbjct: 147 LLVSPPGCGKTTLLRDLIRQISEGNEFIKGMSVGVVDERSEIAG----CYRGVAQNHLGI 202
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R V + + MI + + PE I +DEIG + A G +++ TAH +++
Sbjct: 203 RTDVLDGCPKAEGMIMLIRSMRPEVIAVDEIGGSEDVHAIEYAMHCGCRMIATAHADSME 262
Query: 334 NIVKNPSLQILV 345
+ K P L+
Sbjct: 263 ELQKKPVFDRLI 274
>gi|224114563|ref|XP_002316796.1| predicted protein [Populus trichocarpa]
gi|222859861|gb|EEE97408.1| predicted protein [Populus trichocarpa]
Length = 64
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 286 VMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
V IE VENHMP+ +IDEIGT+LEA+A STIAQ
Sbjct: 28 VFIEEVENHMPQVSVIDEIGTKLEAMAVSTIAQH 61
>gi|345019757|ref|ZP_08783370.1| stage III sporulation protein AA [Ornithinibacillus scapharcae
TW25]
Length = 328
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 7/126 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHM----KRVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L++G P GKTTLIR+I R+++ K+V +VD +EI +P +GR R
Sbjct: 141 LIVGSPQSGKTTLIRDIIRIISSGWKTIPPKKVGVVDERSEIAACLKGIPQHNLGR--RT 198
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + M+ + + PE +++DEIG++ + A GV ++ T HG T+D +
Sbjct: 199 DVLDACPKAEGMMMMIRSMSPEILVVDEIGSDKDVQALMNAINAGVTVICTIHGQTLDEL 258
Query: 336 VKNPSL 341
K PS+
Sbjct: 259 KKRPSI 264
>gi|261366974|ref|ZP_05979857.1| putative stage III sporulation protein AA [Subdoligranulum
variabile DSM 15176]
gi|282571092|gb|EFB76627.1| putative stage III sporulation protein AA [Subdoligranulum
variabile DSM 15176]
Length = 296
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
Query: 210 ICD-LVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSG 268
+C+ L G G +LV G PG GKTT +R + R L+D + V +VD E+ D
Sbjct: 135 VCEYLTTGSGGLLVAGAPGSGKTTFLRTLVRYLSDTD-EIVCVVDERGELMMSDD----- 188
Query: 269 IGRA-RRMQVPNVNMQHSVMIEAVENHM----PETIIIDEIGTELEALAASTIAQRGVQL 323
G+A +R+ V E ++ + P I+ DE+GT + A G+
Sbjct: 189 -GQAQQRLPVCCDVYTRCSKAEGIQMALRCMNPRYIVCDELGTTADTAAVERGVASGICF 247
Query: 324 VGTAHGMTIDNIVKNPSLQILV--GGIESVTLGDEEAKKRKVQKTI 367
+ + H + + K P L L G +V D +V + I
Sbjct: 248 LASVHCDSPQALQKKPQLARLCATGAFSAVAFLDGRQSPGRVSQWI 293
>gi|346306473|ref|ZP_08848629.1| stage III sporulation protein AA [Dorea formicigenerans 4_6_53AFAA]
gi|345897847|gb|EGX67744.1| stage III sporulation protein AA [Dorea formicigenerans 4_6_53AFAA]
Length = 316
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 221 LVIGPPGVGKTTLIREIARMLAD--DHMK--RVVIVDTSNEIGGDGDVPHSGIGRAR--- 273
L++ PPG GKTTL+R++ R +++ + +K V +VD +EI G + G+ +
Sbjct: 147 LLVSPPGCGKTTLLRDLIRQISEGNEFIKGMSVGVVDERSEIAG----CYRGVAQNHLGI 202
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R V + + MI + + PE I +DEIG + A G +++ TAH +++
Sbjct: 203 RTDVLDGCPKAEGMIMLIRSMRPEVIAVDEIGGSEDVHAIEYAMHCGCRMLATAHADSME 262
Query: 334 NIVKNPSLQILV 345
+ K P L+
Sbjct: 263 ELQKKPVFDRLI 274
>gi|336421575|ref|ZP_08601732.1| stage III sporulation protein AA [Lachnospiraceae bacterium
5_1_57FAA]
gi|336000459|gb|EGN30609.1| stage III sporulation protein AA [Lachnospiraceae bacterium
5_1_57FAA]
Length = 312
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 11/132 (8%)
Query: 221 LVIGPPGVGKTTLIREIARMLAD--DHMK--RVVIVDTSNEIGGDGDVPHSGIGRAR--- 273
LVI PP GKTTL+R++ R ++D D ++ V +VD +EIGG + G+ +
Sbjct: 148 LVISPPRCGKTTLLRDMIRQISDGNDWVRGMAVGVVDERSEIGG----CYMGVAQNHLGI 203
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R V + + MI + + PE I +DEIG+ + A G +++ T H +++
Sbjct: 204 RTDVLDGCPKAEGMIMLIRSMGPEVIAVDEIGSAEDVHAIEYAMHCGCKMLATVHAGSME 263
Query: 334 NIVKNPSLQILV 345
+ K P L ++
Sbjct: 264 ELRKKPLLDQMI 275
>gi|338812834|ref|ZP_08624987.1| stage III sporulation protein AA [Acetonema longum DSM 6540]
gi|337275133|gb|EGO63617.1| stage III sporulation protein AA [Acetonema longum DSM 6540]
Length = 336
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 13/157 (8%)
Query: 195 LTCRVGRAVAGSAEIICDLVEGGGS----ILVIGPPGVGKTTLIREIARMLADDHMK--- 247
L R+ R + G+A II V G + L+I PP GKTT++R++ R L+ +
Sbjct: 134 LNIRIARPIPGAANIIMPYVIQGHNKVYNTLIISPPRCGKTTVLRDLTRQLSSGVSQYGF 193
Query: 248 ---RVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
+V +VD +EI VP +G R+ + + + M+ + + P+ I+ DE
Sbjct: 194 AGVQVGLVDERSEIAACYQGVPTVEVGP--RVDILDGCPKAIGMLMLIRSMSPQVIVTDE 251
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPS 340
+G+E + A + GV ++ + HG +I+ P
Sbjct: 252 LGSEEDVRAVNEALHAGVSVIASIHGQNATDILHRPC 288
>gi|333979376|ref|YP_004517321.1| stage III sporulation protein AA [Desulfotomaculum kuznetsovii DSM
6115]
gi|333822857|gb|AEG15520.1| stage III sporulation protein AA [Desulfotomaculum kuznetsovii DSM
6115]
Length = 336
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGGDG-DVPHSGIGRAR 273
L+ PP GKTTL+R+I R L++ + V +VD +E+ G VP +G
Sbjct: 172 LIFSPPRCGKTTLLRDIIRQLSNGAPELDLPGLTVGVVDERSELAGCYRGVPQRDVGV-- 229
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R V + + MI + + P+ I DEIG + + A + GV+++ T HG ++
Sbjct: 230 RTDVLDGCPKAEGMIMLLRSMAPQVIATDEIGRDEDIAALEEVFHAGVRVLVTVHGASLA 289
Query: 334 NIVKNPSLQIL 344
+ P+LQ L
Sbjct: 290 ELAARPALQHL 300
>gi|167758077|ref|ZP_02430204.1| hypothetical protein CLOSCI_00415 [Clostridium scindens ATCC 35704]
gi|167663974|gb|EDS08104.1| stage III sporulation protein AA [Clostridium scindens ATCC 35704]
Length = 312
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 11/132 (8%)
Query: 221 LVIGPPGVGKTTLIREIARMLAD--DHMK--RVVIVDTSNEIGGDGDVPHSGIGRAR--- 273
LVI PP GKTTL+R++ R ++D D ++ V +VD +EIGG + G+ +
Sbjct: 148 LVISPPRCGKTTLLRDMIRQISDGNDWVRGMAVGVVDERSEIGG----CYMGVAQNHLGI 203
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R V + + MI + + PE I +DEIG+ + A G +++ T H +++
Sbjct: 204 RTDVLDGCPKAEGMIMLIRSMGPEVIAVDEIGSAEDVHAIEYAMHCGCKMLATVHAGSME 263
Query: 334 NIVKNPSLQILV 345
+ K P L ++
Sbjct: 264 ELRKKPLLDRMI 275
>gi|354558158|ref|ZP_08977414.1| stage III sporulation protein AA [Desulfitobacterium
metallireducens DSM 15288]
gi|353548883|gb|EHC18327.1| stage III sporulation protein AA [Desulfitobacterium
metallireducens DSM 15288]
Length = 337
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 95/217 (43%), Gaps = 27/217 (12%)
Query: 185 IRNRKMQVIGLTCRVGRAVAGSA-EIICDLVEGGGSI---LVIGPPGVGKTTLIREIARM 240
++N K + GL R+ ++G A +I+ L+ GS+ L++ PP GKTTL+R++ R
Sbjct: 134 VQNLK-HISGLNIRLALEISGQAPQILPRLIRADGSLYHTLILSPPRAGKTTLLRDLIRC 192
Query: 241 LADD------HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENH 294
++D + V +VD EI G H R + + + M + +
Sbjct: 193 ISDGVPNLSLKGQTVGVVDERGEIAGMWQ-GHPSYNLGCRTDILDGCPKAIGMSMLIRSM 251
Query: 295 MPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV--GGIESVT 352
P + +DE+G + A + GV ++ TAH + + K P L+ L G E +
Sbjct: 252 SPRVVAVDELGHPQDVEAVLDALRTGVSVLSTAHAESGEEAKKRPVLKALFASGVFERLV 311
Query: 353 LGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECR 389
+ + RKGP T ++ ++ E R
Sbjct: 312 I-------------LSRRKGPGTVESIFDLKNQLELR 335
>gi|219848638|ref|YP_002463071.1| type II secretion system protein E [Chloroflexus aggregans DSM
9485]
gi|219542897|gb|ACL24635.1| type II secretion system protein E [Chloroflexus aggregans DSM
9485]
Length = 401
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 12/162 (7%)
Query: 206 SAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
+ E++ + GG S+L+ GP G GKTTL + + + M+ VVI D G++P
Sbjct: 181 AGELLLAALNGGASVLIAGPTGSGKTTLAAALTQAIG-TRMRLVVIED-------GGELP 232
Query: 266 HSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVG 325
HS + ++ P S + P II+ E+ EA+A A G +G
Sbjct: 233 HS--ANSLHIEAPAETGGFSRAVTFALRQKPNYIIVGEV-RGGEAMAMLQAAATGHPGLG 289
Query: 326 TAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTI 367
T H T+ ++N L+ G+ T G +A + V+ I
Sbjct: 290 TIHAATVQGALRNLERMALI-GLAHETTGAGQAAAQIVRGLI 330
>gi|317122021|ref|YP_004102024.1| ATPase AAA [Thermaerobacter marianensis DSM 12885]
gi|315592001|gb|ADU51297.1| AAA ATPase [Thermaerobacter marianensis DSM 12885]
Length = 391
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 21/172 (12%)
Query: 187 NRKMQVIGLTCRVGRAVAG-SAEIICDLVEGG------GSILVIGPPGVGKTTLIREIAR 239
R +V GL R RAV G +A ++ LVE G S L++GPP GKTTL+R++AR
Sbjct: 170 ERFRRVRGLVIRRARAVEGCAAPLLPWLVERGRAGPRLASTLLLGPPASGKTTLLRDLAR 229
Query: 240 MLADD-----HMKRVVIVDTSNEI--GGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVE 292
+ +RV +VD E+ GG D+ R V + + ++ A+
Sbjct: 230 LAGTGLPGRLTAQRVAVVDERGELAAGGAFDL-------GPRTAVLEHCPKQAGIVLALR 282
Query: 293 NHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
PE +I DE+G +A+A + + GV +V TAH ++ L+ L
Sbjct: 283 ALSPEVLITDELGGPGDAVAVADAVRAGVTVVATAHARGPADLAGRRQLRAL 334
>gi|402571564|ref|YP_006620907.1| stage III sporulation protein AA [Desulfosporosinus meridiei DSM
13257]
gi|402252761|gb|AFQ43036.1| stage III sporulation protein AA [Desulfosporosinus meridiei DSM
13257]
Length = 356
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 195 LTCRVGRAVAG-SAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADD------ 244
L R+ R + G S +I+ L+ G + L+I PP GKTTL+R++ R +++
Sbjct: 163 LNLRIARDIQGQSLKILPLLLNSAGQLYHTLLISPPRAGKTTLLRDLIRSISNGVPKLRL 222
Query: 245 HMKRVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
+ V +VD E+ G +P +G R V + + S M V + P+ + +DE
Sbjct: 223 EGQTVGVVDERGELAGMWQGIPTYDLGL--RTDVLDGCPKASGMSMMVRSMSPQVLAVDE 280
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKV 363
+G + +A + + GV+++ TAH T++ P + L+ D+E +R V
Sbjct: 281 LGHAEDVVAINDALRTGVRILSTAHAGTLEEARSRPIITHLL---------DQEVFERLV 331
Query: 364 QKTILERKGPPTF 376
+ R GP T
Sbjct: 332 --VLSRRHGPGTL 342
>gi|258515805|ref|YP_003192027.1| stage III sporulation protein AA [Desulfotomaculum acetoxidans DSM
771]
gi|257779510|gb|ACV63404.1| stage III sporulation protein AA [Desulfotomaculum acetoxidans DSM
771]
Length = 345
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 14/160 (8%)
Query: 198 RVGRAVAGSAEIICDLV--EGGGSI---LVIGPPGVGKTTLIREIARMLADD------HM 246
RV R + G+A + V G++ L++ PP GKTTL+R++ R +++
Sbjct: 151 RVSREIPGAASKLIPYVIDRDKGTVKHTLLVSPPRCGKTTLLRDLVRQISNGIPSLSFPG 210
Query: 247 KRVVIVDTSNEIGG-DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
V +VD +E+ G +P +G R V + + MI + P+ I DEIG
Sbjct: 211 TTVGLVDERSELAGCYYGLPQKDVGL--RTDVLDACPKAEGMIMLLRAMSPQVIATDEIG 268
Query: 306 TELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
+ A + GV+++ T H +I +++ P+L+ L+
Sbjct: 269 RAEDVRALEEVFHAGVKVITTVHAASIKELIQRPALKYLL 308
>gi|225375604|ref|ZP_03752825.1| hypothetical protein ROSEINA2194_01229 [Roseburia inulinivorans DSM
16841]
gi|225212583|gb|EEG94937.1| hypothetical protein ROSEINA2194_01229 [Roseburia inulinivorans DSM
16841]
Length = 309
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 10/159 (6%)
Query: 192 VIGLTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMK- 247
++ L R+ G A I L+ SI L++ PG GKTTL+R+ R L++
Sbjct: 117 IMFLNIRIAHEKCGCARKILPLIRQRDSIYNTLILSMPGAGKTTLLRDSIRALSNGEAYG 176
Query: 248 ---RVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
+V +VD +EI VP + +G R V + + M + + P+ I +DE
Sbjct: 177 IRLKVCVVDERSEIAASFHGVPQNDMGP--RTDVMDGCGKAEGMQLLIRSMSPQIIAVDE 234
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
+G E + A G +++GT H + + + P L+
Sbjct: 235 LGAESDFYAVEQALNCGSRVLGTIHAGNMKELSEKPYLK 273
>gi|168333637|ref|ZP_02691897.1| stage III sporulation protein AA [Epulopiscium sp. 'N.t. morphotype
B']
Length = 313
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 19/180 (10%)
Query: 180 HRI-----SAIRNRKMQVI----GLTCRVGRAVAGSAEIICDLVEGGGSI---LVIGPPG 227
HRI + I N+ ++ I + R+ R V G+ I + I L++ PP
Sbjct: 99 HRIGVVGRAVIDNKNLKTITNISAINIRIAREVVGAGNKIVPYIYKNRKICNTLIVSPPK 158
Query: 228 VGKTTLIREIARMLAD----DHMKRVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNM 282
GKTT++R++ R L++ D V IVD +EI +P + +G R V +
Sbjct: 159 CGKTTILRDVIRNLSNGESLDVSYHVGIVDERSEIAACYMGIPQNDVGI--RTDVLDSAP 216
Query: 283 QHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
+ ++ + + PE I +DEIG + + A GV ++ T HG ++++ + P L+
Sbjct: 217 KAEGILMLLRSMSPEIIAVDEIGRDEDYKAIFDALIVGVTVICTIHGSSLNDCLNKPLLK 276
>gi|154498058|ref|ZP_02036436.1| hypothetical protein BACCAP_02039 [Bacteroides capillosus ATCC
29799]
gi|150273048|gb|EDN00205.1| putative stage III sporulation protein AA [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 314
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 9/152 (5%)
Query: 195 LTCRVGRAVAG-SAEIICDLVEGG--GSILVIGPPGVGKTTLIREIARMLADDHM---KR 248
L+ RV R+V G SA I+ L G S L++ PPG GKTTL+R+I R ++D R
Sbjct: 128 LSIRVARSVPGISAGILDGLTVNGLLQSTLILSPPGGGKTTLLRDIIRAVSDGDGVTPMR 187
Query: 249 VVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307
V I D E+ D +P +G RR V + + + ++ + P+ + DEI
Sbjct: 188 VGIADERGELAAMYDGLPQLDVG--RRTDVLDGCPKGTALLMLLRGMNPQVLAADEITAP 245
Query: 308 LEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
+ A A GV L+ TAH +++ P
Sbjct: 246 ADCAALEAAANCGVTLLATAHASGTEDLSSRP 277
>gi|336427118|ref|ZP_08607122.1| stage III sporulation protein AA [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336009971|gb|EGN39958.1| stage III sporulation protein AA [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 319
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 19/156 (12%)
Query: 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARML 241
IRN K + + R+ + G+A+ + + G L +I PPG GKTTL+R+I R +
Sbjct: 118 IRNIK-HISCINIRISHEIKGAADTVLPFLYREGRFLNTLIISPPGCGKTTLLRDIIRQV 176
Query: 242 ADDHMK----RVVIVDTSNEIGGDGDVPHSGIGRAR-----RMQVPNVNMQHSVMIEAVE 292
+D + V IVD +EI G S GRA+ R + + + M+ +
Sbjct: 177 SDGNPYGGGVTVGIVDERSEIAG------SFQGRAQNDVGLRTDILDSCPKAEGMMLLIR 230
Query: 293 NHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAH 328
+ P+ I +DE+G+E + A + G ++ T H
Sbjct: 231 SMAPKVIGVDELGSEEDIDAMKKVLSCGCAILATIH 266
>gi|442804014|ref|YP_007372163.1| stage III sporulation protein AA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442739864|gb|AGC67553.1| stage III sporulation protein AA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 369
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 221 LVIGPPGVGKTTLIREIARMLAD------DHMKRVVIVDTSNEIGGDG-DVPHSGIGRAR 273
L+I PPG+GKTTL+R+I R ++ D + V +VD +EI VP + +G R
Sbjct: 164 LIISPPGMGKTTLLRDIIRSVSSGVENIFDGLN-VGVVDERSEIAACYRGVPQNNLG-YR 221
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
+ +N + + I + + P I +DE+G + + GV+++ TAHG +
Sbjct: 222 TDVINGINKKEGMEI-LLRSMSPRVIAVDELGNPDDVYTVLKVMNAGVRILATAHGFDVA 280
Query: 334 NIVKNPSLQIL 344
++ K + L
Sbjct: 281 SLRKRAGFKEL 291
>gi|374993713|ref|YP_004969212.1| stage III sporulation protein AA [Desulfosporosinus orientis DSM
765]
gi|357212079|gb|AET66697.1| stage III sporulation protein AA [Desulfosporosinus orientis DSM
765]
Length = 353
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 106/223 (47%), Gaps = 31/223 (13%)
Query: 151 IVKHEDLKHAISKVG---------DFSDD-------NRSGIDRSLHRISAIRNRKMQVIG 194
+VKHEDL A+ ++ DF NR GI + + +
Sbjct: 101 VVKHEDLVSALERMTQSSVYAAEEDFRQGFITLPGGNRVGITGKIILLHGNIQTIKHISS 160
Query: 195 LTCRVGRAVAG-SAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMK--- 247
L R+ R ++G +++I+ L+ G++ L+I PP GKTT +R++ R +++ +
Sbjct: 161 LNLRIARDISGLASKILPLLLSDDGNVRHTLIISPPRAGKTTFLRDLIRSISNGVPQIGL 220
Query: 248 ---RVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
V +VD E+ G VP +G + + + + S + V + P+ + +DE
Sbjct: 221 RGLTVGVVDERGELAGMWQGVPTYDLGL--QTDIMDSCPKASGLSMLVRSMSPQVVAMDE 278
Query: 304 IGTELEALAASTIAQR-GVQLVGTAHGMTIDNIVKNPSLQILV 345
IG ++ +AA T A R GV+++ TAH + + + P++ L+
Sbjct: 279 IG-HMDDVAAITDALRTGVRILCTAHASSFEEAHRRPAIAALL 320
>gi|126459667|ref|YP_001055945.1| type II secretion system protein E [Pyrobaculum calidifontis JCM
11548]
gi|126249388|gb|ABO08479.1| type II secretion system protein E [Pyrobaculum calidifontis JCM
11548]
Length = 342
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRAR 273
V+GG ++V GPPG GKTTL+ I ++ + V +D ++E D D
Sbjct: 197 VKGGKHLVVAGPPGAGKTTLLVAIDELIPPTWQR--VYIDEADEFDEDPD---------- 244
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
+ Q+ ++ S I A N + + I E+ E A T + G+Q T H TI+
Sbjct: 245 KNQIKIADVNKSREIYASLNRNIDVVFIGELQYEDHFNAFKTATEIGLQTFATMHAATIE 304
Query: 334 NIVK 337
+ +K
Sbjct: 305 DALK 308
>gi|325680699|ref|ZP_08160237.1| putative stage III sporulation protein AA [Ruminococcus albus 8]
gi|324107479|gb|EGC01757.1| putative stage III sporulation protein AA [Ruminococcus albus 8]
Length = 294
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 190 MQVIGLTC-RVGRAVAGSA-EIICDLVEGG-GSILVIGPPGVGKTTLIREIARMLADDHM 246
+++I C RV R V G A +I C S+L+ G P GKTT++R++ RM +
Sbjct: 109 IRLINSVCIRVPREVKGCASDIFCKCFSDRPSSVLIFGAPSSGKTTILRDLTRMCG--MV 166
Query: 247 KRVVIVDTSNEIGGDG-DVPHSGIGRARRM--QVPNVNMQHSVMIEAVENHMPETIIIDE 303
R ++D E+ P + +G + + P N + AV P+ I+ DE
Sbjct: 167 YRTTLIDERGELAAVYLGRPMNDVGLLTDVFDKYPRKNAIET----AVRVMSPQIIVCDE 222
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSL-QILVGGIESVTL 353
IG+ + L+ + GV+LV + H + + + ++ ++L GI T+
Sbjct: 223 IGSSEDVLSLTYALDSGVKLVCSCHCDSFEELNSKANICELLSAGIFDYTV 273
>gi|398342474|ref|ZP_10527177.1| DNA repair protein RadA [Leptospira inadai serovar Lyme str. 10]
Length = 455
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 80/170 (47%), Gaps = 41/170 (24%)
Query: 201 RAVAGSAEIICDLVEGGGSI-----LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R + G +E+ DLV GGG + L+ G PGVGK+TLI EI+R L++ K + I
Sbjct: 71 RILTGLSEL--DLVLGGGLVPGSLVLIGGEPGVGKSTLILEISRKLSEQGRKLLYI---- 124
Query: 256 NEIGGDGDVPHSGIG-RARRMQV--PNVNMQHSVMIEAV----ENHMPETIIIDEIGT-E 307
G+ S +G RA RM V PN+ + +E V E+ P+ + +D I T
Sbjct: 125 -----SGEESASQVGLRAARMSVLSPNLLLSSETYVENVSAMIEDTEPDLVFVDSIQTLT 179
Query: 308 LEAL--AASTIAQ--------------RGVQLVGTAHGMTIDNIVKNPSL 341
EAL A T+ Q G+ ++ T H +T D + P +
Sbjct: 180 REALPNQAGTVTQLRECTQVLLETAKRTGIPILMTGH-ITKDGAIAGPKI 228
>gi|160945210|ref|ZP_02092436.1| hypothetical protein FAEPRAM212_02729 [Faecalibacterium prausnitzii
M21/2]
gi|158442941|gb|EDP19946.1| putative stage III sporulation protein AA [Faecalibacterium
prausnitzii M21/2]
Length = 302
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH-----SGIGRAR 273
+LV+G PG GKTTL+R IAR LA+ + V ++D E+ G+ +AR
Sbjct: 158 GLLVVGEPGSGKTTLLRTIARTLAERQ-RLVAVIDERGELFPPEGPLPPLERIGGVDKAR 216
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
+Q+ A+ P+ I++DE+G+ E +A GV + + H
Sbjct: 217 AVQM------------ALRTLAPQVILLDELGSLEETMALEQGFFSGVDFIASIHAPDAA 264
Query: 334 NIVKNPSLQILV 345
P +Q L+
Sbjct: 265 QAQCRPQVQALL 276
>gi|121534513|ref|ZP_01666336.1| AAA ATPase [Thermosinus carboxydivorans Nor1]
gi|121307006|gb|EAX47925.1| AAA ATPase [Thermosinus carboxydivorans Nor1]
Length = 349
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGGD-GDVPHSGIGR 271
S L+I PP GKTTL+R+I R L+ + +V +VD +EI VP +G
Sbjct: 175 STLLISPPRCGKTTLLRDIIRQLSSGVRQLNFSGVQVGLVDERSEIAACVSGVPTMDLGP 234
Query: 272 ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331
R+ V + + S ++ + + P+ ++ DE+G +A A GV +V T HG
Sbjct: 235 --RVDVLDGCPKASGLLMLLRSMAPQVLVTDELGRGEDAAAIQEALHAGVVVVATVHGRD 292
Query: 332 IDNIVKNPSLQILV 345
I I + P + L+
Sbjct: 293 IAGIAQRPYVGELI 306
>gi|387818105|ref|YP_005678450.1| stage III sporulation protein AA [Clostridium botulinum H04402 065]
gi|322806147|emb|CBZ03715.1| stage III sporulation protein AA [Clostridium botulinum H04402 065]
Length = 179
Score = 48.5 bits (114), Expect = 0.014, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 81/161 (50%), Gaps = 20/161 (12%)
Query: 102 ELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAI 161
E L +LPS + R +C E+ L E+ +G+ + + + + S + VK ED+K +
Sbjct: 4 EEILNILPSHISRLICDLDEVDKLQEIRFKIGKPIFFQIGNIEKLASYE-VKREDIKSIV 62
Query: 162 SKVGDFS-----DDNRSG--IDRSLHRIS-----AIRNRKMQVI----GLTCRVGRAVAG 205
++ ++S ++ + G + HR+ I K++ I L R+ R +
Sbjct: 63 QRMSNYSIYSFEEEIKQGYLTIKGGHRVGICGRCVIDEGKVKTIRDISSLNIRICREIYN 122
Query: 206 SAEIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLAD 243
+++++ + G +L +I PP GKTT+IR+I++ ++D
Sbjct: 123 ASKLVMPYIVENGHVLNTIIISPPKCGKTTIIRDISKKISD 163
>gi|350270772|ref|YP_004882080.1| stage III sporulation protein AA [Oscillibacter valericigenes
Sjm18-20]
gi|348595614|dbj|BAK99574.1| stage III sporulation protein AA [Oscillibacter valericigenes
Sjm18-20]
Length = 301
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 11/148 (7%)
Query: 198 RVGRAVAGSAEIICDLVEGGGSI---LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254
R+ R G AE +C + GG I L++ PPG GKTTL+R++ R ++ RV + D
Sbjct: 127 RIAREKLGVAEELCQRLLSGGEINSTLLLSPPGGGKTTLLRDLIRCVSQRGF-RVGLADE 185
Query: 255 SNEIGGDGDVPHSGIGRARRMQVPNV--NMQHSVMIEAVENHM-PETIIIDEIGTELEAL 311
E+ V + G + +V ++ I + M P+ + DEI E +
Sbjct: 186 RGEVA----VCYRGKPQMDVGPCTDVLDGCPKAIAIPMLLRTMNPQIVAADEITAEEDIR 241
Query: 312 AASTIAQRGVQLVGTAHGMTIDNIVKNP 339
A + A GV+L+ T H + + P
Sbjct: 242 AMTMAAGCGVKLLATVHAANAAELTQKP 269
>gi|291525262|emb|CBK90849.1| Uncharacterized protein conserved in bacteria [Eubacterium rectale
DSM 17629]
gi|291529279|emb|CBK94865.1| Uncharacterized protein conserved in bacteria [Eubacterium rectale
M104/1]
Length = 313
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 221 LVIGPPGVGKTTLIREIARMLADD----HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
LVI PG GKTT +R+ R+L+D + +V +VD +EI + G+ +
Sbjct: 136 LVISRPGEGKTTFLRDCIRILSDGCDGKNALKVSVVDERSEIA----ACYLGVAQNDIGN 191
Query: 277 VPNV--NMQHSVMIEAVENHM-PETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
+V N S+ + + M P+ I +DE+G E + A + + G++++G+ HG D
Sbjct: 192 SSDVLDNCPKSLGMRMLLRSMSPDVIAVDELGGESDIEALNQLVSCGIRILGSVHGTNAD 251
Query: 334 NIVKNPSLQILVGGIESVTLGDEEAK 359
++ + +IL IE D + K
Sbjct: 252 DLRR----KILPNAIERFVFIDHDEK 273
>gi|357038632|ref|ZP_09100429.1| stage III sporulation protein AA [Desulfotomaculum gibsoniae DSM
7213]
gi|355359424|gb|EHG07186.1| stage III sporulation protein AA [Desulfotomaculum gibsoniae DSM
7213]
Length = 350
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 14/164 (8%)
Query: 194 GLTCRVGRAVAGSAE-----IICDLVEGGGSILVIGPPGVGKTTLIREIARMLADD---- 244
GL RV R + G+A+ +I V ++ PP GKTTL+R++ R +++
Sbjct: 150 GLNIRVCREIKGAADGLIKHLIDRKVNNVYHTVIFSPPRCGKTTLLRDLVRQVSNGVPGL 209
Query: 245 HM--KRVVIVDTSNEIGG-DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIII 301
H + V +VD +EI G VP +G R V + + M+ + P+ I+
Sbjct: 210 HFAGRTVGVVDERSEIAGCHRGVPQMDVGV--RTDVLDGCPKAQGMMILLRAMSPDVIVT 267
Query: 302 DEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
DEIG + A + GV+++ T HG ++ + P+L+ ++
Sbjct: 268 DEIGRMEDIHALEEVFNAGVRVIVTIHGSSLRELTNRPALKYML 311
>gi|347525904|ref|YP_004832652.1| ComG operon protein 1 [Lactobacillus ruminis ATCC 27782]
gi|345284863|gb|AEN78716.1| ComG operon protein 1 [Lactobacillus ruminis ATCC 27782]
Length = 328
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
G IL+ GP G GKTT + E+AR + D K+++ ++ E I R +QV
Sbjct: 134 GLILLSGPMGSGKTTTMYELARKMTD---KQIMCIEDPVE-----------IAEPRFLQV 179
Query: 278 P---NVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDN 334
M + +++ H P+ II EI EL A A A G ++ T H ++
Sbjct: 180 QVNEKAKMSYYDLLKVALRHHPDVFIIGEIRDELTAKTAVNAALSGHLVLSTVHATSVYG 239
Query: 335 I 335
I
Sbjct: 240 I 240
>gi|335997578|ref|ZP_08563492.1| competence protein ComGA [Lactobacillus ruminis SPM0211]
gi|335350261|gb|EGM51758.1| competence protein ComGA [Lactobacillus ruminis SPM0211]
Length = 328
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
G IL+ GP G GKTT + E+AR + D K+++ ++ E I R +QV
Sbjct: 134 GLILLSGPMGSGKTTTMYELARKMTD---KQIMCIEDPVE-----------IAEPRFLQV 179
Query: 278 P---NVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDN 334
M + +++ H P+ II EI EL A A A G ++ T H ++
Sbjct: 180 QVNEKAKMSYYDLLKVALRHHPDVFIIGEIRDELTAKTAVNAALSGHLVLSTVHATSVYG 239
Query: 335 I 335
I
Sbjct: 240 I 240
>gi|323339504|ref|ZP_08079782.1| competence protein ComGA [Lactobacillus ruminis ATCC 25644]
gi|417972857|ref|ZP_12613743.1| ComG operon protein 1 [Lactobacillus ruminis ATCC 25644]
gi|323093073|gb|EFZ35667.1| competence protein ComGA [Lactobacillus ruminis ATCC 25644]
gi|346330774|gb|EGX99007.1| ComG operon protein 1 [Lactobacillus ruminis ATCC 25644]
Length = 328
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
G IL+ GP G GKTT + E+AR + D K+++ ++ E I R +QV
Sbjct: 134 GLILLSGPMGSGKTTTMYELARKMTD---KQIMCIEDPVE-----------IAEPRFLQV 179
Query: 278 P---NVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDN 334
M + +++ H P+ II EI EL A A A G ++ T H ++
Sbjct: 180 QVNEKAKMSYYDLLKVALRHHPDVFIIGEIRDELTAKTAVNAALSGHLVLSTVHATSVYG 239
Query: 335 I 335
I
Sbjct: 240 I 240
>gi|21674021|ref|NP_662086.1| DNA repair protein RadA [Chlorobium tepidum TLS]
gi|21647169|gb|AAM72428.1| DNA repair protein RadA [Chlorobium tepidum TLS]
Length = 456
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 23/117 (19%)
Query: 201 RAVAGSAEIICDLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R + G E+ D V GGG +ILV G PG+GK+TL+ ++ LA + V ++
Sbjct: 70 RTLTGIGEL--DRVLGGGLMEASAILVGGEPGIGKSTLMLQLVPRLAGKKVLYVAGEESP 127
Query: 256 NEIGGDGDVPHSGIGRARRMQV--PNVNMQHSVMIE----AVENHMPETIIIDEIGT 306
N+I RARR+ + PN+ + V +E A+ N PE +I+D I T
Sbjct: 128 NQIR----------ERARRLSIKAPNLRLVSEVALERILDAIANEQPEMVIVDSIQT 174
>gi|289743537|gb|ADD20516.1| replication factor C subunit RFC2 [Glossina morsitans morsitans]
Length = 333
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 203 VAGSAEIICDL----VEGGG-SILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSN 256
+ G+ E +C L +G +I++ GPPGVGKTT I+ +AR+L D K V+ ++ SN
Sbjct: 33 IVGNEETVCRLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSFKEAVLELNASN 92
Query: 257 EIGGD 261
E G D
Sbjct: 93 ERGID 97
>gi|147677501|ref|YP_001211716.1| hypothetical protein PTH_1166 [Pelotomaculum thermopropionicum SI]
gi|146273598|dbj|BAF59347.1| Uncharacterized protein conserved in bacteria [Pelotomaculum
thermopropionicum SI]
Length = 329
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 15/169 (8%)
Query: 186 RNRKMQVI-GLTCRVGRAVAGSAEIICDLV--EGGGSI---LVIGPPGVGKTTLIREIAR 239
R R ++ I R+ R V G+A + V GGSI +++ PP GKTT++R++ R
Sbjct: 122 RVRALKFISACNIRICREVKGAATKVLPYVIDRHGGSIYHTVLVSPPRCGKTTMLRDMVR 181
Query: 240 MLADDHMK------RVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVE 292
+++ V +VD +EI G VP +G R V + + M+ +
Sbjct: 182 QISNGIPALGFPGLTVGLVDERSEIAGCYRGVPKLDVGI--RTDVLDGCPKAEGMMMLLR 239
Query: 293 NHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSL 341
+ P I DEIG + + A + GV+++ TAHG ++ + + P+L
Sbjct: 240 SMSPRVIAADEIGRQEDVDALEEVLNAGVKVLITAHGSSLAELAERPAL 288
>gi|347532101|ref|YP_004838864.1| stage III sporulation protein AA [Roseburia hominis A2-183]
gi|345502249|gb|AEN96932.1| stage III sporulation protein AA [Roseburia hominis A2-183]
Length = 316
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 221 LVIGPPGVGKTTLIREIARML----ADDHMKRVVIVDTSNEIGGDG-DVPHSGIGRARRM 275
L++ PPG+GKTT +R++ R L A +V +VD +EI +P + +G R
Sbjct: 157 LMLSPPGIGKTTFLRDLIRQLSAGDAGAPGMKVGVVDERSEIAACHLGIPQNDLG--PRT 214
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + + + + P+ + +DE+G + + A G +++GT H + +
Sbjct: 215 DVLDGCKKTEGIRMLLRSMSPQILAVDELGGKEDFAAVKQALCCGCRVLGTVHAGCVQEL 274
Query: 336 VKNPSLQILV 345
+ P LQ V
Sbjct: 275 LDKPYLQACV 284
>gi|238924594|ref|YP_002938110.1| stage III sporulation protein AA [Eubacterium rectale ATCC 33656]
gi|238876269|gb|ACR75976.1| stage III sporulation protein AA [Eubacterium rectale ATCC 33656]
Length = 313
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 221 LVIGPPGVGKTTLIREIARMLADD----HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
LVI PG GKTT +R+ R+L+D + +V +VD +EI + G+ +
Sbjct: 136 LVISRPGEGKTTFLRDCIRILSDGCDGKNALKVSVVDERSEIA----ACYLGVAQNDIGN 191
Query: 277 VPNV--NMQHSVMIEAVENHM-PETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
+V N S+ + + M P+ I +DE+G E + A + + G++++G+ HG D
Sbjct: 192 SSDVLDNCPKSLGMRMLLRSMSPDVIAVDELGGEGDIEALNQLVSCGIRILGSVHGTNAD 251
Query: 334 NIVKNPSLQILVGGIESVTLGDEEAK 359
++ + +IL IE D + K
Sbjct: 252 DLRR----KILPHAIERFVFIDHDEK 273
>gi|384135427|ref|YP_005518141.1| stage III sporulation protein AA [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339289512|gb|AEJ43622.1| stage III sporulation protein AA [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 337
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 219 SILVIGPPGVGKTTLIREIARMLA------DDHMKRVVIVDTSNEIGGDGD-VPHSGIGR 271
S L++ PP GKTTL+R++AR L+ D+ +V ++D +EI G D +P +G
Sbjct: 167 SSLIVSPPQCGKTTLVRDVARRLSYGDFAPDNPGLKVAVIDERSEIAGSVDGIPQFDLGP 226
Query: 272 ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
R V + + M+ A+ + P ++ DEIG
Sbjct: 227 --RADVLDGCPKAEGMMMAIRSLSPHVVVTDEIG 258
>gi|295100821|emb|CBK98366.1| Uncharacterized protein conserved in bacteria [Faecalibacterium
prausnitzii L2-6]
Length = 293
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 23/134 (17%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH------SGIGRA 272
+L++G P GKTTL+R +AR LA + + V ++D EI + SGI +
Sbjct: 148 GMLLMGEPDSGKTTLLRGVARELAKQN-RAVAVIDERREIFPSEESAALPLDILSGIPKG 206
Query: 273 RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT--ELEALAASTIAQRGVQLVGTAHGM 330
+ +Q+ A+ P+ I++DE+G EL AL + GV+ + T H
Sbjct: 207 QAVQM------------ALRTLSPQVILLDELGGMDELYALEQGLFS--GVEFIATLHAA 252
Query: 331 TIDNIVKNPSLQIL 344
+ + + P +Q L
Sbjct: 253 SWEEAARRPQVQYL 266
>gi|163846485|ref|YP_001634529.1| type II secretion system protein E [Chloroflexus aurantiacus
J-10-fl]
gi|222524266|ref|YP_002568737.1| type II secretion system protein E [Chloroflexus sp. Y-400-fl]
gi|163667774|gb|ABY34140.1| type II secretion system protein E [Chloroflexus aurantiacus
J-10-fl]
gi|222448145|gb|ACM52411.1| type II secretion system protein E [Chloroflexus sp. Y-400-fl]
Length = 401
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 12/162 (7%)
Query: 206 SAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
+++++ + GG S+L+ GP G GKTTL + + + HM+ VVI D G++P
Sbjct: 181 ASDLLLAALNGGASLLIAGPTGSGKTTLAAALTQAIGR-HMRLVVIED-------GGELP 232
Query: 266 HSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVG 325
S + ++ P + P II+ E+ EA+A A G +G
Sbjct: 233 RS--ANSLHIEAPPEPGGFGRAVTFALRQKPNYIIVGEV-RGGEAMAMLQAAATGHPGLG 289
Query: 326 TAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTI 367
T H T+ ++N L+ G+ T G +A + V+ I
Sbjct: 290 TIHAATVQGALRNLERMALI-GLAQETTGAGQAAAQIVRGLI 330
>gi|410686773|ref|YP_006963076.1| TrbB protein [Ralstonia pickettii]
gi|359743378|gb|AEV56831.1| TrbB [uncultured bacterium]
gi|359743587|gb|AEV57037.1| TrbB [uncultured bacterium]
gi|359743937|gb|AEV57382.1| TrbB [uncultured bacterium]
gi|388482624|gb|AFK33146.1| TrbB protein [Ralstonia pickettii]
gi|403398257|gb|AFR43841.1| mating pair formation protein [uncultured bacterium]
Length = 320
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 182 ISAIRNRKMQVIGLTCRV--GRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
+ AIR + + V L V G A A+ I D V +ILVIG G GKTTL+ I +
Sbjct: 111 VFAIRKKAIAVYTLAQYVEAGIMTAAQAQSIADAVAAHKNILVIGGTGSGKTTLVNAIIQ 170
Query: 240 MLAD-DHMKRVVIVDTSNEI 258
+ D D ++R VI++ + EI
Sbjct: 171 AMVDHDALERFVIIEDTGEI 190
>gi|406915711|gb|EKD54764.1| hypothetical protein ACD_60C00045G0003 [uncultured bacterium]
Length = 760
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 29/167 (17%)
Query: 149 EQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRV---GRAVAG 205
++I+ H D++ ++K+ + N S DR + + + R+ KM + G V G AV
Sbjct: 425 KKIIDHTDIEKVVAKIARIPERNVSTSDREILK-NLTRDLKMMIFGQDEAVETLGAAVRL 483
Query: 206 SAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLA--------DDHMKRVVIVDTSNE 257
S + D V+ GS L IGP GVGKT + +++A+ L ++M+R + S
Sbjct: 484 SRSGLRDPVKPIGSFLFIGPTGVGKTEVSKQLAKQLGIELIRFDMSEYMERHTV---SRL 540
Query: 258 IGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304
IG P +G + ++ EAV H +++DEI
Sbjct: 541 IGA----PPGYVGYD----------EGGLLTEAVNKHPHSVVLLDEI 573
>gi|119872468|ref|YP_930475.1| type II secretion system protein E [Pyrobaculum islandicum DSM
4184]
gi|119673876|gb|ABL88132.1| type II secretion system protein E [Pyrobaculum islandicum DSM
4184]
Length = 342
Score = 46.6 bits (109), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 210 ICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGI 269
I L++ G I++ GPPG GKTT + + ++ + ++RV I D ++E D
Sbjct: 193 IYRLIKEGKHIVITGPPGSGKTTFLVALDDLIPPN-LQRVYI-DEADEFDED-------- 242
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHG 329
+ ++++ NV+ V A N + I I E+ E A T + G+Q + T H
Sbjct: 243 PKKNQIKIRNVDKIKEVY--ASLNRNIDVIFIGELQYENHFHAFKTATEIGIQTLATMHS 300
Query: 330 MTIDNIVKNPSLQILVGGIESVTLGDE--EAKKRKV 363
++++ ++ + + I + L + EA KRKV
Sbjct: 301 TSVNDAIERLEKYVKLKNIAIIQLAKQPKEAVKRKV 336
>gi|408792547|ref|ZP_11204157.1| DNA repair protein RadA [Leptospira meyeri serovar Hardjo str. Went
5]
gi|408463957|gb|EKJ87682.1| DNA repair protein RadA [Leptospira meyeri serovar Hardjo str. Went
5]
Length = 455
Score = 46.6 bits (109), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 27/133 (20%)
Query: 201 RAVAGSAEIICDLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R G +E+ DLV GGG +LV G PGVGK+TL+ EIA+ +A++ +
Sbjct: 74 RTSTGFSEL--DLVFGGGIVPGSLVLVGGEPGVGKSTLVLEIAKNIANEGSVLYI----- 126
Query: 256 NEIGGDGDVPHSGIG-RARRMQVPNVNMQHSVMIEA------VENHMPETIIIDEIGTEL 308
G+ S IG RA+RM V + N+ S + A + + P+ + ID I T L
Sbjct: 127 -----SGEESASQIGLRAKRMGVTSKNILLSSEVYAENISQMISDLKPKVVFIDSIQTIL 181
Query: 309 -EALA--ASTIAQ 318
E+L A TI Q
Sbjct: 182 KESLVNQAGTITQ 194
>gi|392426588|ref|YP_006467582.1| stage III sporulation protein AA [Desulfosporosinus acidiphilus
SJ4]
gi|391356551|gb|AFM42250.1| stage III sporulation protein AA [Desulfosporosinus acidiphilus
SJ4]
Length = 340
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 221 LVIGPPGVGKTTLIREIARMLADD------HMKRVVIVDTSNEIGG-DGDVPHSGIGRAR 273
LVI P GKTTL+R++ R++++ + V ++D E+ G + +P +G
Sbjct: 179 LVISAPRAGKTTLLRDLIRLISNGVPQMGLEGQSVGVIDERGELAGMNKGLPSYNLGC-- 236
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R V + + M + + P+ +++DE+G E A + GV+++ TAH +++
Sbjct: 237 RTDVLDGCPKVYGMTMLIRSMAPQVVVMDELGHHDEIEALKDALRTGVRILCTAHASSLE 296
Query: 334 NIVKNPSLQILV 345
P+L L+
Sbjct: 297 EAKTRPTLSYLL 308
>gi|444920731|ref|ZP_21240570.1| Lon protease [Wohlfahrtiimonas chitiniclastica SH04]
gi|444507951|gb|ELV08124.1| Lon protease [Wohlfahrtiimonas chitiniclastica SH04]
Length = 826
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++ + LK+ I+K + D + SG+D+ +++R ++ + +T ++V
Sbjct: 303 DWLLKMPWNQRSRLKYDITKAEERLDQDHSGLDK-------VKDRILEYLAVTNHT-KSV 354
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
G+ I+C +IGPPGVGKTTL R IA
Sbjct: 355 KGN--ILC----------LIGPPGVGKTTLARSIA 377
>gi|260893532|ref|YP_003239629.1| stage III sporulation protein AA [Ammonifex degensii KC4]
gi|260865673|gb|ACX52779.1| stage III sporulation protein AA [Ammonifex degensii KC4]
Length = 323
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 18/199 (9%)
Query: 195 LTCRVGRAVAGSAE-IICDLVEGG----GSILVIGPPGVGKTTLIREIARMLA------D 243
L R+ R + G A + L++G L++ PP GKTT +R++ R +
Sbjct: 127 LNLRIAREIKGVATPFLPYLIQGNPPRVCHTLIVSPPRGGKTTFLRDLVRHFSWGLPALG 186
Query: 244 DHMKRVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
V +VD E+ VP IG R + N + + + + PE I +D
Sbjct: 187 FPGATVGLVDERGEVAACFRGVPQLDIG-PRTDVLSNCSKVEGIRL-LLRAFAPEVIAMD 244
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL--VGGIESVTLGDEEAKK 360
E+G E A GV+++ T H +++ + + P + L +G +E L +
Sbjct: 245 EVGRAEEVRAVEDALNAGVRVIATVHAGSLEELNRRPFFRFLSRLGVVERFVLLSRRGAR 304
Query: 361 RKVQKTILERKGPPTFTCA 379
R+V T+L+ +G C
Sbjct: 305 RQV--TVLDGEGRVMKLCC 321
>gi|193212788|ref|YP_001998741.1| DNA repair protein RadA [Chlorobaculum parvum NCIB 8327]
gi|193086265|gb|ACF11541.1| DNA repair protein RadA [Chlorobaculum parvum NCIB 8327]
Length = 456
Score = 46.2 bits (108), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 23/117 (19%)
Query: 201 RAVAGSAEIICDLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R + G E+ D V GGG +ILV G PG+GK+TL+ ++ LA + V ++
Sbjct: 70 RLMTGIGEL--DRVLGGGLMEASAILVGGEPGIGKSTLMIQLVPRLAGKKVLYVAGEESP 127
Query: 256 NEIGGDGDVPHSGIGRARRMQV--PNVNMQHSVMIE----AVENHMPETIIIDEIGT 306
N+I RARR+ + PN+ + V +E A+ N PE +I+D I T
Sbjct: 128 NQIR----------ERARRLSIKAPNLRLVSEVALERILDAIANEQPEMVIVDSIQT 174
>gi|345861748|ref|ZP_08814000.1| stage III sporulation protein AA [Desulfosporosinus sp. OT]
gi|344325141|gb|EGW36667.1| stage III sporulation protein AA [Desulfosporosinus sp. OT]
Length = 315
Score = 46.2 bits (108), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 24/192 (12%)
Query: 195 LTCRVGRAVAGSAEIICDLVEGG----GSILVIGPPGVGKTTLIREIARMLADDHMK--- 247
L R+ R + G I L+ G L+I PP GKTTL+R++ R++++ +
Sbjct: 124 LNLRIARDIPGRGLKILPLLLGADGTFAHTLLISPPRAGKTTLLRDLIRLISNGVPQLGL 183
Query: 248 ---RVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
V +VD E+ G VP +G R V + + + M V + P+ I +DE
Sbjct: 184 MGLTVGVVDERGELAGMWQGVPTYNLGY--RTDVLDGCPKATGMNMIVRSMAPQVIAMDE 241
Query: 304 IGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKV 363
+G + A + GV+++ TAH +I+ P L L+ D+ A +R V
Sbjct: 242 LGHADDVNALMDALRTGVRILSTAHASSIEEARNRPILAHLL---------DQGAFERLV 292
Query: 364 QKTILERKGPPT 375
+ R GP T
Sbjct: 293 --VLSRRHGPGT 302
>gi|18313110|ref|NP_559777.1| conjugal transfer protein [Pyrobaculum aerophilum str. IM2]
gi|18160619|gb|AAL63959.1| conjugal transfer protein, conjectural [Pyrobaculum aerophilum str.
IM2]
Length = 343
Score = 46.2 bits (108), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRAR 273
V+ G I++ GPPG GKTTL+ I ++ ++RV I D ++E D D
Sbjct: 197 VKEGRHIVITGPPGSGKTTLLSVIDDLIP-GQLQRVYI-DEADEFDDDPD--------KN 246
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
++++ NVN V A N + III E+ E A T + G+Q + T H ++
Sbjct: 247 QIKIRNVNKLREVY--ASLNRNIDIIIIGELQYEEHFNAFKTAVEIGLQTLATMHATSVK 304
Query: 334 NIVK 337
+ +K
Sbjct: 305 DALK 308
>gi|379005716|ref|YP_005261388.1| Type IV secretory pathway VirB11 component [Pyrobaculum oguniense
TE7]
gi|375161169|gb|AFA40781.1| Type IV secretory pathway VirB11 component [Pyrobaculum oguniense
TE7]
Length = 343
Score = 46.2 bits (108), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHS 267
EI+ L EG ++V GPPG GKTTL+ I ++ H++RV I D ++E D P+
Sbjct: 192 EIVAWLREGR-HVVVSGPPGSGKTTLLAAIDDLIP-PHLQRVYI-DEADEFEDD---PNK 245
Query: 268 GIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTA 327
++++ +VN V+ A N + I I E+ E A T ++ G+Q + T
Sbjct: 246 N-----QIKIRSVNKAKEVL--ASLNRNIDVIFIGELQYEEHFAAFRTASELGLQTLATM 298
Query: 328 HGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERK 371
H ++++ K + GIE +G + K+ I+ERK
Sbjct: 299 HATSVEDAQKRLERR----GIEPQNIGIVQLSKK--YGDIIERK 336
>gi|114797553|ref|YP_759702.1| ATP-dependent protease La [Hyphomonas neptunium ATCC 15444]
gi|114737727|gb|ABI75852.1| ATP-dependent protease La [Hyphomonas neptunium ATCC 15444]
Length = 806
Score = 45.8 bits (107), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 20/104 (19%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +D++ + K DD+ G+D+ ++ R ++ + + R GR
Sbjct: 295 DWILSLPWGKRKDIETDLLKAEKQLDDDHYGLDK-------VKERILEYLAVQKRTGRL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247
I+C ++GPPGVGKT+L R IA D ++
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIAEATGRDFVR 378
>gi|308802412|ref|XP_003078519.1| unnamed protein product [Ostreococcus tauri]
gi|116056972|emb|CAL51399.1| unnamed protein product [Ostreococcus tauri]
Length = 260
Score = 45.8 bits (107), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 600 EVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENS 643
EVR+A+E +VIP + VELLPR + I+A Q LV++Y L+ S
Sbjct: 217 EVRMAVEQLVIPHRDPVELLPRSNRIIALQQALVDTYSLSHSKS 260
>gi|372292448|gb|AEX92046.1| conjugal transfer ATPase TrbB [uncultured bacterium]
gi|372292634|gb|AEX92229.1| conjugal transfer ATPase TrbB [uncultured bacterium]
Length = 320
Score = 45.8 bits (107), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 182 ISAIRNRKMQVIGLTCRV--GRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
+ AIR + + V L V G A A+ I D V +ILVIG G GKTTL+ I +
Sbjct: 111 VFAIRKKAIAVYTLAQYVESGIMTAAQAQAIRDAVAAHKNILVIGGTGSGKTTLVNAIIQ 170
Query: 240 MLAD-DHMKRVVIVDTSNEI 258
+ D D ++R VI++ + EI
Sbjct: 171 AMVDHDALERFVIIEDTGEI 190
>gi|313679507|ref|YP_004057246.1| ATP-dependent proteinase [Oceanithermus profundus DSM 14977]
gi|313152222|gb|ADR36073.1| ATP-dependent proteinase [Oceanithermus profundus DSM 14977]
Length = 808
Score = 45.8 bits (107), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 13/141 (9%)
Query: 108 LPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDF 167
LP +R+E+ RELG L + D + R DW+++ + I +
Sbjct: 258 LPENVRKEV--DRELGRLARMHPDSAEAAVIR-TYLDWIVNLPWNTRTEDNLDIERAKQI 314
Query: 168 SDDNRSGIDRSLHRISAIRNRKMQVIGL-TCRVGRAVAGSAEIICDLVEGGGSILVIGPP 226
D++ G+++ +++R ++ + + R RA G EI + V G +L +GPP
Sbjct: 315 LDEDHYGLEK-------VKDRVLEYLAVRKLRYERAKRG--EIPAEEVNKGPILLFVGPP 365
Query: 227 GVGKTTLIREIARMLADDHMK 247
GVGKT++ + IAR L +++
Sbjct: 366 GVGKTSIAKSIARALGRKYVR 386
>gi|374579571|ref|ZP_09652665.1| stage III sporulation protein AA [Desulfosporosinus youngiae DSM
17734]
gi|374415653|gb|EHQ88088.1| stage III sporulation protein AA [Desulfosporosinus youngiae DSM
17734]
Length = 354
Score = 45.8 bits (107), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 24/206 (11%)
Query: 155 EDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVI----GLTCRVGRAVAGSAEII 210
EDLK NR GI + ++ ++Q I L R+ R V G I
Sbjct: 126 EDLKQGFIT---LPGGNRVGITGE----AVLQQGQIQTIKHISSLNLRIARDVPGLGLKI 178
Query: 211 CDLV---EGG-GSILVIGPPGVGKTTLIREIARMLADD------HMKRVVIVDTSNEIGG 260
L+ EGG L+I PP GKTTL+R++ R +++ + V +VD E+ G
Sbjct: 179 LPLLLDEEGGIFHTLLISPPRAGKTTLLRDLIRSISNGVPQLGLRGQTVGVVDERGELAG 238
Query: 261 DGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
VP +G R + + + M V + P+ + +DE+G + +A + +
Sbjct: 239 MWQGVPTYDLGY--RTDILDGCPKARGMSIMVRSMSPQVLAVDELGHREDVIAIADALRT 296
Query: 320 GVQLVGTAHGMTIDNIVKNPSLQILV 345
GVQ++ TAH TI+ P + L+
Sbjct: 297 GVQILSTAHAGTIEEARSRPVISNLL 322
>gi|402497007|ref|YP_006556267.1| ATP-dependent Lon protease [Wolbachia endosymbiont of Onchocerca
ochengi]
gi|398650280|emb|CCF78450.1| ATP-dependent Lon protease [Wolbachia endosymbiont of Onchocerca
ochengi]
Length = 819
Score = 45.8 bits (107), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 20/103 (19%)
Query: 145 WVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVA 204
W++ KH+D+K ++ D+N GI++ +++R ++ + + RV + +
Sbjct: 311 WLLDLPWGKHKDIKINLNAAKKILDENHYGIEK-------VKDRIIEFLAVLKRV-KEIK 362
Query: 205 GSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247
G I+C ++GPPGVGKT+L + IAR + D ++
Sbjct: 363 GP--ILC----------LVGPPGVGKTSLAKSIARAVGRDFVR 393
>gi|334137167|ref|ZP_08510612.1| stage III sporulation protein AA [Paenibacillus sp. HGF7]
gi|333605365|gb|EGL16734.1| stage III sporulation protein AA [Paenibacillus sp. HGF7]
Length = 397
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 248 RVVIVDTSNEIGG-DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
+V IVD +EI + VP +G R V + + M+ + + PE +I+DEIG
Sbjct: 243 KVGIVDERSEIAASERGVPRFDLGP--RTDVLDACPKAEGMMMMIRSMSPEVLIVDEIGR 300
Query: 307 ELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSL-QILVGGI--ESVTLGDEEAKKRKV 363
+A A G++++ TAHG + ++ + P L ++L G+ V LG A R V
Sbjct: 301 HEDAEAIREALHAGIRIIATAHGRDLGDVKRRPVLRELLESGVFGRYVILGRSAAGGRLV 360
Query: 364 Q 364
Q
Sbjct: 361 Q 361
>gi|111038056|ref|YP_709143.1| TrbB protein [uncultured bacterium]
gi|110781061|emb|CAK02645.1| TrbB protein [uncultured bacterium]
gi|372292512|gb|AEX92109.1| conjugal transfer ATPase TrbB [uncultured bacterium]
gi|372292572|gb|AEX92168.1| conjugal transfer ATPase TrbB [uncultured bacterium]
Length = 320
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 182 ISAIRNRKMQVIGLTCRV--GRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
+ AIR + + V L V G A A+ I D V +ILVIG G GKTTL+ I +
Sbjct: 111 VFAIRKKAIAVYTLAQYVESGIMTAAQAQAIRDAVAAHKNILVIGGTGSGKTTLVNAIIQ 170
Query: 240 MLAD-DHMKRVVIVDTSNEI 258
+ D D ++R VI++ + EI
Sbjct: 171 AMVDHDALERFVIIEDTGEI 190
>gi|410657082|ref|YP_006909453.1| Stage III sporulation protein AA [Dehalobacter sp. DCA]
gi|410660119|ref|YP_006912490.1| Stage III sporulation protein AA [Dehalobacter sp. CF]
gi|409019437|gb|AFV01468.1| Stage III sporulation protein AA [Dehalobacter sp. DCA]
gi|409022475|gb|AFV04505.1| Stage III sporulation protein AA [Dehalobacter sp. CF]
Length = 352
Score = 45.4 bits (106), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 9/132 (6%)
Query: 221 LVIGPPGVGKTTLIREIARMLADD----HMK--RVVIVDTSNEIGGDGD-VPHSGIGRAR 273
L++ PP GKTT++R + + L++ ++K V +VD +EI G +P +G
Sbjct: 181 LLVSPPRAGKTTMLRFLVKNLSNGVPQLNLKGHTVGVVDERSEIAGMWQGIPSFDLGC-- 238
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
R V + + +I + + PE + +DE+G +A A + GV+++ T H ++D
Sbjct: 239 RTDVLDRCPKAQGLIMLIRSMAPEVVAVDELGGREDAAALGEAVRCGVKILATVHAGSLD 298
Query: 334 NIVKNPSLQILV 345
+ K L+ L+
Sbjct: 299 ELQKRAHLRELL 310
>gi|421185900|ref|ZP_15643296.1| Type II secretory pathway/competence component, ATPase [Oenococcus
oeni AWRIB418]
gi|399968096|gb|EJO02550.1| Type II secretory pathway/competence component, ATPase [Oenococcus
oeni AWRIB418]
Length = 324
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 40/202 (19%)
Query: 133 GRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDN----RSGIDRSLHRISAIRNR 188
R+P + S DW + +Q +L IS VGDF + R DR +H + ++
Sbjct: 68 NRRP--QMGSMDWPLDKQ-----NLSLRISTVGDFKNQETMVIRILYDREIHNLVWLKKE 120
Query: 189 KMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR 248
+ + ++ G ++V GP G GKT+ I E+ R A D K
Sbjct: 121 QFSHLK-----------------QIIPSHGLVVVAGPTGSGKTSTIHELLREYASD--KL 161
Query: 249 VVIVDTSNEIGGDGDVPHSGIGRARRMQV-PNVNMQHSVMIEAVENHMPETIIIDEIGTE 307
V+ ++ EI R ++QV + +M + +I+ H P+ ++I EI
Sbjct: 162 VLTIEDPVEIKN---------SRFVQLQVNQHASMTYLDLIKVALRHHPDILLIGEIRDS 212
Query: 308 LEALAASTIAQRGVQLVGTAHG 329
A A A G + T H
Sbjct: 213 QTAQATIQAALSGHLVFSTIHA 234
>gi|258511760|ref|YP_003185194.1| stage III sporulation protein AA [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478486|gb|ACV58805.1| stage III sporulation protein AA [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 334
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 219 SILVIGPPGVGKTTLIREIAR-------MLADDHMKRVVIVDTSNEIGGDGD-VPHSGIG 270
S L++ PP GKTTL+R++AR L D +K V ++D +EI G D +P +G
Sbjct: 164 SSLIVSPPQCGKTTLVRDVARRFSYGDFALVDPGLK-VAVIDERSEIAGSVDGIPQFDLG 222
Query: 271 RARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
R V + + M+ A+ + P ++ DEIG
Sbjct: 223 P--RADVLDGCPKAEGMMMAIRSLSPHVVVTDEIG 255
>gi|170724636|ref|YP_001758662.1| ATPase central domain-containing protein [Shewanella woodyi ATCC
51908]
gi|169809983|gb|ACA84567.1| AAA ATPase central domain protein [Shewanella woodyi ATCC 51908]
Length = 277
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 212 DLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSG 268
DL + SI++ G PG GKTTL++ +A L DD++K V + S E+ D D+ S
Sbjct: 44 DLYKFAPSIMLYGSPGTGKTTLLKNVAYSLKDDNLKYVTL---SLELMLDKDLGMSS 97
>gi|359687913|ref|ZP_09257914.1| DNA repair protein RadA [Leptospira licerasiae serovar Varillal
str. MMD0835]
gi|418751360|ref|ZP_13307646.1| DNA repair protein RadA [Leptospira licerasiae str. MMD4847]
gi|418758806|ref|ZP_13314988.1| DNA repair protein RadA [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|384114708|gb|EIE00971.1| DNA repair protein RadA [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|404273963|gb|EJZ41283.1| DNA repair protein RadA [Leptospira licerasiae str. MMD4847]
Length = 455
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 75/167 (44%), Gaps = 39/167 (23%)
Query: 201 RAVAGSAEIICDLVEGGGS-----ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R +G +E+ DLV GGG ILV G PGVGK+TLI EI+R + K +
Sbjct: 71 RLSSGLSEL--DLVLGGGLVPGSLILVGGEPGVGKSTLILEISRSMISQGRKILY----- 123
Query: 256 NEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEA------VENHMPETIIIDEIGT-EL 308
I G+ G+ RA RM V + N+ S A VE+ P+ + +D I T
Sbjct: 124 --ISGEESAAQVGL-RAARMNVLSENLLLSSETYAENISAMVEDVAPDLVFVDSIQTLTR 180
Query: 309 EAL--AASTIAQ--------------RGVQLVGTAHGMTIDNIVKNP 339
EAL A T+ Q G+ +V T H +T D + P
Sbjct: 181 EALPNQAGTVTQLRECTQVLLETAKRTGIPIVMTGH-ITKDGAIAGP 226
>gi|117926914|ref|YP_867531.1| Lon-A peptidase [Magnetococcus marinus MC-1]
gi|117610670|gb|ABK46125.1| ATP-dependent proteinase, Serine peptidase, MEROPS family S16
[Magnetococcus marinus MC-1]
Length = 812
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 53/104 (50%), Gaps = 20/104 (19%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +LKH +++ +++ G+ + ++ R ++ + + +VG+
Sbjct: 303 DWLVSLPWNKESELKHDLTEAETILEEDHDGLKK-------VKERILEYLAVQKKVGKM- 354
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247
I+C ++GPPGVGKT+L + IAR ++++
Sbjct: 355 --KGPILC----------LVGPPGVGKTSLAKSIARATGREYVR 386
>gi|345304168|ref|YP_004826070.1| DNA repair protein RadA [Rhodothermus marinus SG0.5JP17-172]
gi|345113401|gb|AEN74233.1| DNA repair protein RadA [Rhodothermus marinus SG0.5JP17-172]
Length = 453
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 28/133 (21%)
Query: 201 RAVAGSAEIICDLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R V G AE+ D V GGG IL+ G PG+GK+TL+ E+AR L D +RV+ V
Sbjct: 71 RLVTGVAEL--DRVLGGGIVPGSLILLAGDPGIGKSTLMTELARYLPD---RRVLYVT-- 123
Query: 256 NEIGGDGDVPHSGIGRARRMQVPNVNM------QHSVMIEAVENHMPETIIIDEIGT--- 306
G+ V + RARR+ V N+ ++EA +P+ +++D I T
Sbjct: 124 ----GEESVRQVRL-RARRLGVEGDNLLLLAETNLEAILEAARRVVPDVLVVDSIQTVYR 178
Query: 307 -ELEALAASTIAQ 318
ELE+ A +++Q
Sbjct: 179 PELES-APGSVSQ 190
>gi|335356398|ref|ZP_08548268.1| type II secretion system protein E [Lactobacillus animalis KCTC
3501]
Length = 324
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 92/211 (43%), Gaps = 30/211 (14%)
Query: 143 GDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRA 202
G W +Q + + L S VGDF S + R ++ + +++ + +
Sbjct: 73 GAW---QQKIGKQQLYLRFSTVGDFLG-RESMVIRLIYPLKSVKYQYL------------ 116
Query: 203 VAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDG 262
V ++ + G ++ GP G GKTT + ++A+ + ++V+ ++ EI D
Sbjct: 117 VPEQWTLLEQACQKRGLVIFAGPMGSGKTTAMYQLAK---NQKQQQVMCIEDPIEIREDS 173
Query: 263 DVPHSGIGRARRMQV-PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGV 321
+ ++QV P M +S +++A H P+ I+ EI A A T A G
Sbjct: 174 FL---------QVQVNPKAQMDYSTLLKAALRHHPDIFIVGEIRDRQTARAVLTAALSGH 224
Query: 322 QLVGTAHGMTIDNIVKNPS-LQILVGGIESV 351
++ T H + +++ + L I +ESV
Sbjct: 225 LVLSTLHATSAYGVIERLADLGITWSELESV 255
>gi|171185782|ref|YP_001794701.1| type II secretion system protein E [Pyrobaculum neutrophilum
V24Sta]
gi|170934994|gb|ACB40255.1| type II secretion system protein E [Pyrobaculum neutrophilum
V24Sta]
Length = 342
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 12/151 (7%)
Query: 187 NRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHM 246
+RK IG + G + I V G I+V GPPG GKTTL+ + ++ + +
Sbjct: 170 HRKKLRIGDLLKSGFLTLEQLQEIYRYVREGKHIVVTGPPGSGKTTLLVALDDIIPPN-L 228
Query: 247 KRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
+RV I D ++E D D ++++ NVN V A N + I + E+
Sbjct: 229 QRVYI-DEADEFEEDPD--------KNQIKIHNVNKMREVY--ASLNRNIDVIFVGELQY 277
Query: 307 ELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
E A T + G+Q + T H +++ ++
Sbjct: 278 EDHFHAFRTATEMGIQTLATMHSTSVEGALR 308
>gi|149376710|ref|ZP_01894468.1| ATP-dependent protease La [Marinobacter algicola DG893]
gi|149358949|gb|EDM47415.1| ATP-dependent protease La [Marinobacter algicola DG893]
Length = 805
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+++ K ++H I K D D++ G+D ++ R ++ + + RV + V
Sbjct: 296 DWMLAIPWKKRSRVRHDIEKARDILDEDHYGLDE-------VKKRILEYLAVQSRV-KKV 347
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
G ++C ++GPPGVGKT+L + IAR
Sbjct: 348 KGP--VLC----------LVGPPGVGKTSLGQSIAR 371
>gi|167770749|ref|ZP_02442802.1| hypothetical protein ANACOL_02095 [Anaerotruncus colihominis DSM
17241]
gi|167667344|gb|EDS11474.1| putative stage III sporulation protein AA [Anaerotruncus
colihominis DSM 17241]
Length = 318
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 34/160 (21%)
Query: 198 RVGRAVAGSAEIICDLVEGG-----GSILVIGPPGVGKTTLIREIARMLADDH---MKRV 249
R+ R + G A+ L+ G +L+ G P GKTTL+R++AR L+ ++V
Sbjct: 134 RIAREIFGCAD---QLIRGYFMDRPCGLLLAGAPASGKTTLLRDLARQLSSGTPGVYRKV 190
Query: 250 VIVDTSNEIGGD-GDVPHSGIG----------RARRMQVPNVNMQHSVMIEAVENHMPET 298
+VD S EIG G + + +G +A+ +Q+ A+ PE
Sbjct: 191 CVVDESGEIGASSGGLIQNDLGPCCDLLAGYPKAKGLQI------------AIRYLSPEI 238
Query: 299 IIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKN 338
II DEI TE E A + GV +V + H + + + +
Sbjct: 239 IICDEIATEAEIEAVAAAVNSGVAVVTSVHAASFEELYRK 278
>gi|365134919|ref|ZP_09343478.1| stage III sporulation protein AA [Subdoligranulum sp. 4_3_54A2FAA]
gi|363613246|gb|EHL64764.1| stage III sporulation protein AA [Subdoligranulum sp. 4_3_54A2FAA]
Length = 308
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 203 VAGSAEIICD------LVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN 256
VA + CD L G +L+ G PG GKTTL+R + L+ ++ +VD
Sbjct: 132 VARTGLCACDAVLRPLLCAPGVGLLIAGAPGSGKTTLLRAVLAELSAAG-RKTAVVDERF 190
Query: 257 EIGGDGDVPHSGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAS 314
EI V SG + V + +H M A+ P+ I+ DE+G + A +
Sbjct: 191 EIA---PVEQSGFCTRLPQHCDVLSGYPKHIGMQHALRALAPDVIVCDEVGAMEDIAAIT 247
Query: 315 TIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
A GV LV T H + + + P L+
Sbjct: 248 QAANAGVGLVVTIHAPDAETLRRRPQYTALL 278
>gi|88813216|ref|ZP_01128456.1| GTP-binding signal recognition particle SRP54 [Nitrococcus mobilis
Nb-231]
gi|88789538|gb|EAR20665.1| GTP-binding signal recognition particle SRP54 [Nitrococcus mobilis
Nb-231]
Length = 439
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 212 DLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-VVIVDTSN-EIGG 260
D+VE GG I ++GP GVGKTT + ++A A H +R V +V T N IGG
Sbjct: 215 DIVERGGVIAIVGPTGVGKTTTVAKLAARFALRHGRRHVALVTTDNFRIGG 265
>gi|150390255|ref|YP_001320304.1| sporulation stage III, protein AA [Alkaliphilus metalliredigens
QYMF]
gi|149950117|gb|ABR48645.1| Sporulation stage III, protein AA [Alkaliphilus metalliredigens
QYMF]
Length = 346
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 13/154 (8%)
Query: 194 GLTCRVGRAVAGSA-EIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLA----DDH 245
GL RV R G A ++ L++ +L ++ PP GKTTL+R+I R ++ +
Sbjct: 142 GLNIRVAREKKGIALPLLSHLIDHNHEMLNTLIVSPPQCGKTTLLRDIIRNISRGVEEIS 201
Query: 246 MK--RVVIVDTSNEIGGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIID 302
+K +V +VD +EI V + +G R V + + M+ + P+ I D
Sbjct: 202 LKGHKVGVVDERSEIAASFQGVAQNDLGP--RTDVLDACPKAIGMMMLIRAMSPDVIATD 259
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336
EIG + +A G++L+ T HG ++D I+
Sbjct: 260 EIGRHEDGMAIEEAIMAGIKLITTVHGNSLDEIL 293
>gi|183220184|ref|YP_001838180.1| DNA repair protein RadA [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189910304|ref|YP_001961859.1| DNA repair protein RadA [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167774980|gb|ABZ93281.1| ATP-dependent serine protease [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167778606|gb|ABZ96904.1| DNA repair protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
Length = 455
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 25/132 (18%)
Query: 201 RAVAGSAEIICDLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R G +E+ DLV GGG +LV G PGVGK+TL+ EIA+ +A+ T
Sbjct: 74 RTQTGFSEL--DLVLGGGIVPGSLVLVGGEPGVGKSTLVLEIAKNIANQ--------GTV 123
Query: 256 NEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEA------VENHMPETIIIDEIGTEL- 308
I G+ G+ RA+RM V + N+ S + A + + P+ + ID I T +
Sbjct: 124 LYISGEESASQIGL-RAKRMGVTSENILLSSEVYAENIAQMISDIKPKVVFIDSIQTIIK 182
Query: 309 EALA--ASTIAQ 318
E+L A TI Q
Sbjct: 183 ESLVNQAGTITQ 194
>gi|146303799|ref|YP_001191115.1| ATPase [Metallosphaera sedula DSM 5348]
gi|145702049|gb|ABP95191.1| ATPase associated with various cellular activities, AAA_5
[Metallosphaera sedula DSM 5348]
Length = 599
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 16/95 (16%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
GG++L +GPPGVGKT L +AR A D+ + T+N + DV IG +Q
Sbjct: 310 GGNVLFVGPPGVGKTELATRLARYYAGDN---CYTITTANSLWFRRDV----IG-GETIQ 361
Query: 277 VPNVNMQHSVMIEAVENHMPE-------TIIIDEI 304
+V + ++++A N E IIIDEI
Sbjct: 362 AGSVIWKSGLLVKAY-NRAAEIPSANSFAIIIDEI 395
>gi|18313204|ref|NP_559871.1| hypothetical protein PAE2240 [Pyrobaculum aerophilum str. IM2]
gi|18160720|gb|AAL64053.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 304
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 186 RNRKMQVIGLTCRVGRAVAGSAEIICDLVEG---GGSILVIGPPGVGKTTLIREIARMLA 242
R RK+ V +T ++G+ + G +++ D++ G G +++IGP G+GKTTL +A +LA
Sbjct: 21 RVRKIGVDEITAKIGKVLKGLDDVVLDVLSGIMIGRPVVLIGPVGLGKTTLAETLAEVLA 80
>gi|410584372|ref|ZP_11321475.1| hypothetical protein ThesuDRAFT_00062 [Thermaerobacter subterraneus
DSM 13965]
gi|410504307|gb|EKP93818.1| hypothetical protein ThesuDRAFT_00062 [Thermaerobacter subterraneus
DSM 13965]
Length = 403
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 21/172 (12%)
Query: 187 NRKMQVIGLTCRVGRAVAGSA-EIICDLVEGG------GSILVIGPPGVGKTTLIREIAR 239
R +V GL R R V+G A ++ LVE S L+IG P GKTTL+R++AR
Sbjct: 197 ERFRRVRGLVIRRARPVSGCATPLLPYLVEPARPGPCLASTLLIGAPASGKTTLLRDLAR 256
Query: 240 MLADD-----HMKRVVIVDTSNEI--GGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVE 292
+ + +RV +VD E+ GG D+ R V + + + A+
Sbjct: 257 LASAGVPGTLAGRRVAVVDERGELAAGGAFDL-------GPRTAVLEHCPKEAGIPLALR 309
Query: 293 NHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344
PE ++ DE+G +A A + GV +V TAH ++ ++ L+ L
Sbjct: 310 ALSPEVLVTDELGGPHDAAAVAEAVHAGVTVVATAHAGSVADLEARRQLRAL 361
>gi|145592329|ref|YP_001154331.1| type II secretion system protein E [Pyrobaculum arsenaticum DSM
13514]
gi|145284097|gb|ABP51679.1| type II secretion system protein E [Pyrobaculum arsenaticum DSM
13514]
Length = 343
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHS 267
EI+ L EG ++V GPPG GKTTL+ I ++ H++RV I D ++E D P+
Sbjct: 192 EIVAWLREGR-HVVVSGPPGSGKTTLLAAIDDLIP-PHLQRVYI-DEADEFEDD---PNK 245
Query: 268 GIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTA 327
++++ +VN V+ A N + I I E+ E A T ++ G+Q + T
Sbjct: 246 N-----QIKIRSVNKAKEVL--ASLNRNIDVIFIGELQYEDHFAAFRTASEMGLQTLATM 298
Query: 328 HGMTIDNIVK 337
H +++ K
Sbjct: 299 HATNVEDAQK 308
>gi|268317889|ref|YP_003291608.1| DNA repair protein RadA [Rhodothermus marinus DSM 4252]
gi|262335423|gb|ACY49220.1| DNA repair protein RadA [Rhodothermus marinus DSM 4252]
Length = 453
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 28/133 (21%)
Query: 201 RAVAGSAEIICDLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R V G AE+ D V GGG IL+ G PG+GK+TL+ E+AR L D +RV+ V
Sbjct: 71 RLVTGVAEL--DRVLGGGIVPGSLILLAGDPGIGKSTLMTELARYLPD---RRVLYVT-- 123
Query: 256 NEIGGDGDVPHSGIGRARRMQVPNVNM------QHSVMIEAVENHMPETIIIDEIGT--- 306
G+ V + RARR+ V N+ ++EA P+ +++D I T
Sbjct: 124 ----GEESVRQVRL-RARRLGVEGDNLLLLAETNLEAILEAARRVAPDVLVVDSIQTVYR 178
Query: 307 -ELEALAASTIAQ 318
ELE+ A +++Q
Sbjct: 179 PELES-APGSVSQ 190
>gi|312113927|ref|YP_004011523.1| heme exporter protein CcmA [Rhodomicrobium vannielii ATCC 17100]
gi|311219056|gb|ADP70424.1| heme exporter protein CcmA [Rhodomicrobium vannielii ATCC 17100]
Length = 211
Score = 44.3 bits (103), Expect = 0.25, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 190 MQVIGLTC-RVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR 248
+ V+GL C R GR V + VE G ++++ GP G GKTTL+R IA L + R
Sbjct: 6 LAVVGLACQRGGRIVVPALSF---KVEAGCALILRGPNGAGKTTLLRTIAGYLPAES-GR 61
Query: 249 VVIVDTSNEIGGDGD---VPHSGIGRARRMQVPNVNMQHS 285
V + D E G+G + H+ + R V NV+ S
Sbjct: 62 VAVSDDKGEGTGEGQFHYIGHTNGIKPRLTVVENVSFWQS 101
>gi|332297071|ref|YP_004438993.1| DNA repair protein RadA [Treponema brennaborense DSM 12168]
gi|332180174|gb|AEE15862.1| DNA repair protein RadA [Treponema brennaborense DSM 12168]
Length = 462
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 30/192 (15%)
Query: 201 RAVAGSAEIICDLVEGGGS-----ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R G AE C L GGG+ ILV G PG+GK+TL+ + A +A+ ++ +
Sbjct: 74 RISTGIAEFDCVL--GGGAMKRSAILVGGEPGIGKSTLLLQTAAKIAESGAAGKIVYVSG 131
Query: 256 NEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHM----PETIIIDEIGTELEAL 311
E +G + ++ N+N+ + +E +E+ + P +++D I T A
Sbjct: 132 EESASQIRSRADRLGLTQTVEAGNINLLCTTRLEDIEDALNDLNPGFVVVDSIQTVYGAE 191
Query: 312 AA-----------------STIAQRGVQLVGTAHGMTIDNIVKNP-SLQILVGGIESVTL 353
A I +R L AH +T + ++ P SL+ +V + S
Sbjct: 192 AGIVPGTVNQLKYCANELIGWIKERDAVLFLAAH-VTKEGMIAGPKSLEHMVDAVISFER 250
Query: 354 GDEEAKKRKVQK 365
DE+ + + QK
Sbjct: 251 NDEQVRFLRAQK 262
>gi|88705174|ref|ZP_01102886.1| ATP-dependent protease La N-terminal, partial [Congregibacter
litoralis KT71]
gi|88700869|gb|EAQ97976.1| ATP-dependent protease La N-terminal [Congregibacter litoralis
KT71]
Length = 387
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +KH + + D D + G++ ++ R ++ + + RV R V
Sbjct: 272 DWMVSVPWAKRSKVKHDLKRATDILDADHYGLEE-------VKERILEYLAVQKRV-RKV 323
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
G ++C ++GPPGVGKT+L IAR
Sbjct: 324 KGP--VLC----------LVGPPGVGKTSLGESIAR 347
>gi|386283627|ref|ZP_10060851.1| DNA repair protein RadA [Sulfurovum sp. AR]
gi|385345170|gb|EIF51882.1| DNA repair protein RadA [Sulfurovum sp. AR]
Length = 450
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 25/119 (21%)
Query: 201 RAVAGSAEIICDLVEGGGSI-----LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R +GS E+ DLV GGG + L+ G PGVGK+TL+ +IA LA K V+ +
Sbjct: 73 RFTSGSGEL--DLVLGGGIVPGSLTLIGGSPGVGKSTLLLKIAGNLARASKK--VLYVSG 128
Query: 256 NEIGGDGDVPHSGIGRARRMQ--------VPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
E G + RA R+ +P +N+ SV+ E + NH E I+ID I T
Sbjct: 129 EESAGQIKL------RANRLDANHENLFLLPEINL-GSVLSE-IGNHAYELIVIDSIQT 179
>gi|395243196|ref|ZP_10420183.1| DNA repair protein radA [Lactobacillus hominis CRBIP 24.179]
gi|394484426|emb|CCI81191.1| DNA repair protein radA [Lactobacillus hominis CRBIP 24.179]
Length = 459
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIV---DTSNEIGGDGDVPHSGIGRAR 273
G +L+ G PG+GK+TL+ +I+ LA H +V+ V +++N+I D G+G++
Sbjct: 93 GSLVLIGGDPGIGKSTLMLQISSNLAQGH--KVLYVSGEESANQIKMRAD--RLGLGQSN 148
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
+ P NM + + E + + PE ++ID I T
Sbjct: 149 ILLYPETNMDN--IREQINDLKPEFLVIDSIQT 179
>gi|254480662|ref|ZP_05093909.1| ATP-dependent protease La [marine gamma proteobacterium HTCC2148]
gi|214039245|gb|EEB79905.1| ATP-dependent protease La [marine gamma proteobacterium HTCC2148]
Length = 803
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +KH + + D++ G+D +++R ++ + + RV R V
Sbjct: 294 DWMVSVPWTKRSKVKHDLKRATRILDEDHYGLDE-------VKDRIVEYLAVQKRV-RKV 345
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
G ++C ++GPPGVGKT+L IAR
Sbjct: 346 KGP--VLC----------LVGPPGVGKTSLGESIAR 369
>gi|347534159|ref|YP_004840829.1| DNA repair protein radA-like protein [Lactobacillus
sanfranciscensis TMW 1.1304]
gi|345504215|gb|AEN98897.1| DNA repair protein radA-like protein [Lactobacillus
sanfranciscensis TMW 1.1304]
Length = 460
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 31/182 (17%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIV---DTSNEIGGDGDVPHSGIGRAR 273
G +L+ G PG+GK+TL+ +++ L+ + KRV+ V ++++++ D G+
Sbjct: 92 GSLVLIGGDPGIGKSTLLLQVSGQLS-HYGKRVLYVTGEESADQVKMRSD--RLGVKHLD 148
Query: 274 RMQV-PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTI 332
+ V P +M + + EA+ N P+ +IID + T E AS + V G+T
Sbjct: 149 NLYVFPETDM--TAIREAIANVKPDVVIIDSVQTMQEGDVASAVGS-----VSQVRGVTA 201
Query: 333 D--NIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRV 390
D NI K ++ I V G VT G A GP T V+ + E
Sbjct: 202 DLMNIAKTNNITIFVVG--HVTKGGAIA-------------GPKTLEHMVDTVLYFEGDK 246
Query: 391 HH 392
HH
Sbjct: 247 HH 248
>gi|254514391|ref|ZP_05126452.1| ATP-dependent protease La [gamma proteobacterium NOR5-3]
gi|219676634|gb|EED32999.1| ATP-dependent protease La [gamma proteobacterium NOR5-3]
Length = 804
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +KH + + D D + G++ ++ R ++ + + RV R V
Sbjct: 294 DWMVSVPWSKRSKVKHDLKRASDILDADHYGLEE-------VKERILEYLAVQKRV-RKV 345
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
G ++C ++GPPGVGKT+L IAR
Sbjct: 346 KGP--VLC----------LVGPPGVGKTSLGESIAR 369
>gi|449465838|ref|XP_004150634.1| PREDICTED: peroxisome biogenesis protein 1-like [Cucumis sativus]
Length = 935
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 41/170 (24%)
Query: 218 GSILVIGPPGVGKTTLIREIARML--ADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRM 275
G IL+ GPPG GKT L R A+ L DD + VV V S + + R+
Sbjct: 580 GHILICGPPGSGKTLLARAAAKFLQEYDDLLAHVVFVCCSQ-------LASEKVQTIRQS 632
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
+ V+ EA+E H P I+ D +L+++ ST G QL + +T
Sbjct: 633 LLNYVS-------EALE-HAPSLIVFD----DLDSIILSTSESEGSQLSASMSAIT---- 676
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISR 385
+ L+ I DE +KRK + GP F +V+ + +
Sbjct: 677 ------EFLIDMI------DEYEEKRKSSCQV----GPIAFVASVQTLDK 710
>gi|396584189|ref|ZP_10484678.1| ATPase, AAA family [Actinomyces sp. ICM47]
gi|395548222|gb|EJG15529.1| ATPase, AAA family [Actinomyces sp. ICM47]
Length = 393
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 183 SAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEG---GGSILVIGPPGVGKTTLIREIAR 239
S+ +N + ++ L +G+AV G + L+ G GG L+ G PGV KT L+R +AR
Sbjct: 76 SSEKNTQEALLALKAEIGKAVVGQDAAVTGLIVGLVAGGHALLEGVPGVAKTLLVRTLAR 135
Query: 240 MLADDHMKRV 249
L D +M R+
Sbjct: 136 AL-DVNMARI 144
>gi|374325885|ref|YP_005084085.1| type II secretion system protein E [Pyrobaculum sp. 1860]
gi|356641154|gb|AET31833.1| type II secretion system protein E [Pyrobaculum sp. 1860]
Length = 310
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 13/150 (8%)
Query: 210 ICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGI 269
I V G I+V GPPG GKTTL+ + ++ + + V +D ++E D P
Sbjct: 160 IYRWVREGRHIVVTGPPGSGKTTLLSALDDLIPGEWQR--VYIDEADEFEDD---PQKN- 213
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHG 329
++++ NVN I A N + I I E+ E A T + G+Q + T H
Sbjct: 214 ----QIKIRNVNKVKE--IYASLNRNIDVIFIGELQYEEHFAAFKTAVEIGLQTLATMHS 267
Query: 330 MTI-DNIVKNPSLQILVGGIESVTLGDEEA 358
+ + D + + +I V + V LG + A
Sbjct: 268 VNVNDAVTRLRRREIDVKNLGIVQLGKKYA 297
>gi|125977992|ref|XP_001353029.1| GA13416 [Drosophila pseudoobscura pseudoobscura]
gi|195172285|ref|XP_002026929.1| GL12737 [Drosophila persimilis]
gi|54641780|gb|EAL30530.1| GA13416 [Drosophila pseudoobscura pseudoobscura]
gi|194112697|gb|EDW34740.1| GL12737 [Drosophila persimilis]
Length = 331
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNEIGGD 261
+I++ GPPGVGKTT I+ +AR+L D K V+ ++ SNE G D
Sbjct: 51 NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGID 94
>gi|317471830|ref|ZP_07931165.1| stage III sporulation protein AA, partial [Anaerostipes sp.
3_2_56FAA]
gi|316900603|gb|EFV22582.1| stage III sporulation protein AA [Anaerostipes sp. 3_2_56FAA]
Length = 233
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 34/179 (18%)
Query: 124 DLIEVVMDLGRKPLARFPSGDWVISEQ-----------IVKHEDLKHAISKVGDFS---- 168
+L E+ + + + + R+ + ++ +S + ++ ++LK + + ++S
Sbjct: 28 ELQEIRLRIHQPVIVRYENKEYFLSTEGKLTASHHFVHVLTRDELKQMMEYISNYSLYAY 87
Query: 169 -DDNRSGI--DRSLHRISA----------IRNRKMQVIGLTCRVGRAVAGSAEIICDLVE 215
D R G + HR+ IR K + L RV V G AE I +
Sbjct: 88 EDQLRQGFLTVKGGHRVGIAGKVSIEDGEIRTMK-HITFLNIRVAHEVIGCAEGIFEHCT 146
Query: 216 GGGS---ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDG-DVPHSGIG 270
G +L+I PPG GKTTL+R++ R +A D + V +VD +EI VP + +G
Sbjct: 147 KDGQLLPVLIISPPGRGKTTLLRDMIR-IASDGGETVGVVDERSEIAASYMGVPQNKVG 204
>gi|126179950|ref|YP_001047915.1| ATPase [Methanoculleus marisnigri JR1]
gi|125862744|gb|ABN57933.1| ATPase, PilT family [Methanoculleus marisnigri JR1]
Length = 631
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 25/126 (19%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
+L+ GPPG GKTTL + +A LAD++ +V T + P R +QVP
Sbjct: 262 GVLIAGPPGAGKTTLAQSLATFLADNNF----VVKTM-------EAP-------RDLQVP 303
Query: 279 NVNMQHSVMIEAVENHM-------PETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331
+ Q++ + ++ N P+ +I DEI + + + G+ +VG H M
Sbjct: 304 DHITQYTALEGSMANTAEALLLVRPDYVIFDEIRKSEDFNVYADMRLAGMGMVGVVHAME 363
Query: 332 IDNIVK 337
+ + ++
Sbjct: 364 VHDCLR 369
>gi|449487682|ref|XP_004157748.1| PREDICTED: peroxisome biogenesis protein 1-like [Cucumis sativus]
Length = 1123
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 41/170 (24%)
Query: 218 GSILVIGPPGVGKTTLIREIARML--ADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRM 275
G IL+ GPPG GKT L R A+ L DD + VV V S + ++
Sbjct: 580 GHILICGPPGSGKTLLARAAAKFLQEYDDLLAHVVFVCCSQL-------------ASEKV 626
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
Q ++ + V EA+E H P I+ D +L+++ ST G QL + +T
Sbjct: 627 QTIRQSLLNYVS-EALE-HAPSLIVFD----DLDSIILSTSESEGSQLSASMSAIT---- 676
Query: 336 VKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISR 385
+ L+ I DE +KRK + GP F +V+ + +
Sbjct: 677 ------EFLIDMI------DEYEEKRKSSCQV----GPIAFVASVQTLDK 710
>gi|255594365|ref|XP_002536079.1| conserved hypothetical protein [Ricinus communis]
gi|223520969|gb|EEF26304.1| conserved hypothetical protein [Ricinus communis]
Length = 601
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 212 DLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252
D + GGG V GPPG GKTTL+REI AD+ ++R ++
Sbjct: 71 DSLRGGGLFAVNGPPGTGKTTLLREI---FADNIVRRAAVL 108
>gi|195337341|ref|XP_002035287.1| GM14011 [Drosophila sechellia]
gi|194128380|gb|EDW50423.1| GM14011 [Drosophila sechellia]
Length = 331
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNEIGGD 261
+I++ GPPGVGKTT I+ +AR+L D K V+ ++ SNE G D
Sbjct: 51 NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGID 94
>gi|17647857|ref|NP_523915.1| replication factor C subunit 4 [Drosophila melanogaster]
gi|1703054|sp|P53034.1|RFC2_DROME RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40; AltName: Full=Replication
factor C subunit 4; Short=DmRfc4
gi|639708|gb|AAB60241.1| rfc40 [Drosophila melanogaster]
gi|7292439|gb|AAF47843.1| replication factor C subunit 4 [Drosophila melanogaster]
gi|20151645|gb|AAM11182.1| LD40483p [Drosophila melanogaster]
gi|220944360|gb|ACL84723.1| RfC40-PA [synthetic construct]
gi|220954324|gb|ACL89705.1| RfC40-PA [synthetic construct]
Length = 331
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNEIGGD 261
+I++ GPPGVGKTT I+ +AR+L D K V+ ++ SNE G D
Sbjct: 51 NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGID 94
>gi|195587662|ref|XP_002083580.1| GD13291 [Drosophila simulans]
gi|194195589|gb|EDX09165.1| GD13291 [Drosophila simulans]
Length = 331
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNEIGGD 261
+I++ GPPGVGKTT I+ +AR+L D K V+ ++ SNE G D
Sbjct: 51 NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGID 94
>gi|194866271|ref|XP_001971841.1| GG14218 [Drosophila erecta]
gi|190653624|gb|EDV50867.1| GG14218 [Drosophila erecta]
Length = 331
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNEIGGD 261
+I++ GPPGVGKTT I+ +AR+L D K V+ ++ SNE G D
Sbjct: 51 NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGID 94
>gi|455646963|gb|EMF25966.1| Ftsk/SpoIIIE family protein [Streptomyces gancidicus BKS 13-15]
Length = 1339
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGD----G 262
+ + DL GG + VIG P GKTTL+R + LA H R V V + +GG
Sbjct: 831 GQWVLDLTTAGGHVAVIGGPQSGKTTLLRTLVLSLAVTHTPRDVAVYGLDLVGGGLSALA 890
Query: 263 DVPHSG--IGRARR 274
+PH G GRA R
Sbjct: 891 GLPHVGGVAGRADR 904
>gi|189346630|ref|YP_001943159.1| DNA repair protein RadA [Chlorobium limicola DSM 245]
gi|189340777|gb|ACD90180.1| DNA repair protein RadA [Chlorobium limicola DSM 245]
Length = 457
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 30/134 (22%)
Query: 201 RAVAGSAEIICDLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R + G E+ D V GGG ++LV G PG+GK+TL+ ++A +A + + ++
Sbjct: 70 RHMTGIGEL--DRVLGGGIMQASAVLVGGEPGIGKSTLMLQLAPRMAPAKVLYISGEESP 127
Query: 256 NEIGGDGDVPHSGIGRARRMQV--------PNVNMQHSVMIEAVENHMPETIIIDEIGT- 306
N+I RARR+ + P VN++ +IEA+E P +I+D I T
Sbjct: 128 NQIR----------ERARRLSIRADNLLLLPEVNLER--IIEAIEQEKPGLVIVDSIQTV 175
Query: 307 --ELEALAASTIAQ 318
E +A TI Q
Sbjct: 176 YSEEYQSSAGTITQ 189
>gi|195491632|ref|XP_002093645.1| GE20646 [Drosophila yakuba]
gi|194179746|gb|EDW93357.1| GE20646 [Drosophila yakuba]
Length = 331
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNEIGGD 261
+I++ GPPGVGKTT I+ +AR+L D K V+ ++ SNE G D
Sbjct: 51 NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGID 94
>gi|194750805|ref|XP_001957720.1| GF23886 [Drosophila ananassae]
gi|190625002|gb|EDV40526.1| GF23886 [Drosophila ananassae]
Length = 331
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNEIGGD 261
+I++ GPPGVGKTT I+ +AR+L D K V+ ++ SNE G D
Sbjct: 51 NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGID 94
>gi|195440776|ref|XP_002068216.1| GK10084 [Drosophila willistoni]
gi|194164301|gb|EDW79202.1| GK10084 [Drosophila willistoni]
Length = 333
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNEIGGD 261
+I++ GPPGVGKTT I+ +AR+L D K V+ ++ SNE G D
Sbjct: 53 NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGID 96
>gi|58426836|gb|AAW75873.1| flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae
KACC 10331]
Length = 610
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 15/139 (10%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-VVIVDTSNEIGGDGDVPHSGI 269
D +E GG I ++GP G GKTT I ++A+ A H R V +V T + G + HS
Sbjct: 395 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHTPRDVALVTTDTQRVGGREQLHS-Y 453
Query: 270 GRARRMQVPNVNMQHSV--MIEAVENHMPETIIIDE--IGTELEALAASTIAQRGVQLV- 324
GR + V + S+ + E + ++ + ++ID +G ALAA R Q V
Sbjct: 454 GRQLGVAVHEADSAESLLDLFERLRDY--KLVLIDTAGMGQRDRALAAQLNWLRAAQQVT 511
Query: 325 ------GTAHGMTIDNIVK 337
AH +D +V+
Sbjct: 512 SLLVLPANAHFSDLDEVVR 530
>gi|6969593|gb|AAF33830.1|AF226282_4 flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae]
Length = 561
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 15/139 (10%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-VVIVDTSNEIGGDGDVPHSGI 269
D +E GG I ++GP G GKTT I ++A+ A H R V +V T + G + HS
Sbjct: 346 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHTPRDVALVTTDTQRVGGREQLHS-Y 404
Query: 270 GRARRMQVPNVNMQHSV--MIEAVENHMPETIIIDE--IGTELEALAASTIAQRGVQLV- 324
GR + V + S+ + E + ++ + ++ID +G ALAA R Q V
Sbjct: 405 GRQLGIAVHEADSAESLLDLFERLRDY--KLVLIDTAGMGQRDRALAAQLNWLRAAQQVT 462
Query: 325 ------GTAHGMTIDNIVK 337
AH +D +V+
Sbjct: 463 SLLVLPANAHFSDLDEVVR 481
>gi|440732137|ref|ZP_20912101.1| flagellar biosynthesis regulator FlhF, partial [Xanthomonas
translucens DAR61454]
gi|440370218|gb|ELQ07154.1| flagellar biosynthesis regulator FlhF, partial [Xanthomonas
translucens DAR61454]
Length = 456
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIG 270
D +E GG I +IGP G GKTT I ++A + H R V + T++ I G G
Sbjct: 241 LDPIEEGGVIALIGPTGAGKTTTIAKLASRFLERHAARDVALVTTDTIRVGGREQLHSYG 300
Query: 271 RARRMQVPNVNMQHSV--MIEAVENHMPETIIIDEIG---------TELEALAASTIAQR 319
R + V + ++ ++E + ++ + ++ID G +L L AS + +
Sbjct: 301 RQLGIAVHEADSDAALQQLLERLRDY--KLVLIDTAGMGQRDRALAAQLHWLRASRVVRS 358
Query: 320 GVQLVGTAHGMTIDNIVK 337
+ L AH +D +V+
Sbjct: 359 LLVLPANAHFSDLDEVVR 376
>gi|122879200|ref|YP_201258.6| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv.
oryzae KACC 10331]
Length = 552
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 15/139 (10%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-VVIVDTSNEIGGDGDVPHSGI 269
D +E GG I ++GP G GKTT I ++A+ A H R V +V T + G + HS
Sbjct: 337 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHTPRDVALVTTDTQRVGGREQLHS-Y 395
Query: 270 GRARRMQVPNVNMQHSV--MIEAVENHMPETIIIDE--IGTELEALAASTIAQRGVQLV- 324
GR + V + S+ + E + ++ + ++ID +G ALAA R Q V
Sbjct: 396 GRQLGVAVHEADSAESLLDLFERLRDY--KLVLIDTAGMGQRDRALAAQLNWLRAAQQVT 453
Query: 325 ------GTAHGMTIDNIVK 337
AH +D +V+
Sbjct: 454 SLLVLPANAHFSDLDEVVR 472
>gi|188576805|ref|YP_001913734.1| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|188576998|ref|YP_001913927.1| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|188521257|gb|ACD59202.1| flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188521450|gb|ACD59395.1| flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 551
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 15/139 (10%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-VVIVDTSNEIGGDGDVPHSGI 269
D +E GG I ++GP G GKTT I ++A+ A H R V +V T + G + HS
Sbjct: 336 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHTPRDVALVTTDTQRVGGREQLHS-Y 394
Query: 270 GRARRMQVPNVNMQHSV--MIEAVENHMPETIIIDE--IGTELEALAASTIAQRGVQLV- 324
GR + V + S+ + E + ++ + ++ID +G ALAA R Q V
Sbjct: 395 GRQLGIAVHEADSAESLLDLFERLRDY--KLVLIDTAGMGQRDRALAAQLNWLRAAQQVT 452
Query: 325 ------GTAHGMTIDNIVK 337
AH +D +V+
Sbjct: 453 SLLVLPANAHFSDLDEVVR 471
>gi|257439784|ref|ZP_05615539.1| putative stage III sporulation protein AA [Faecalibacterium
prausnitzii A2-165]
gi|257197804|gb|EEU96088.1| putative stage III sporulation protein AA [Faecalibacterium
prausnitzii A2-165]
Length = 326
Score = 43.1 bits (100), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEI-----GGDGDVPHSGIGRAR 273
+L++G PG GKTTL+R IAR L K + ++D E+ G+ +G+ + +
Sbjct: 182 GMLLVGEPGSGKTTLLRSIARELVRQQ-KILSVIDERRELFAGNTHGEALDVLAGLPKGQ 240
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTID 333
+Q+ A+ P+ I++DE+G E A GV + T H T +
Sbjct: 241 AVQM------------ALRTLSPQVILLDELGGLDEVTALEQGLFSGVDFIATLHAATPE 288
Query: 334 NIVKNPSLQILV 345
P ++ L+
Sbjct: 289 EATMRPQVKYLM 300
>gi|407718847|ref|YP_006796252.1| hypothetical protein C270_06720 [Leuconostoc carnosum JB16]
gi|407242603|gb|AFT82253.1| hypothetical protein C270_06720 [Leuconostoc carnosum JB16]
Length = 318
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 203 VAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDG 262
V+ E I + G L+ GP G GKTT + + LADD K V+ ++ EI
Sbjct: 110 VSQQFEAIQTALPSAGLFLISGPTGSGKTTTLYRLLDQLADD--KLVLTIEDPVEIQQPK 167
Query: 263 DVPHSGIGRARRMQV-PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGV 321
V ++QV + + + +I+ H PE +++ EI + A AA A G
Sbjct: 168 FV---------QLQVNEDAGIYYDELIKVALRHRPEILLVGEIRDKKTAQAAVQAALSGH 218
Query: 322 QLVGTAHGMTIDNIV 336
++ T H M+ +++
Sbjct: 219 LVLSTVHAMSARDVI 233
>gi|84624135|ref|YP_451507.1| flagellar biosynthesis regulator FlhF [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|84368075|dbj|BAE69233.1| flagellar biosynthetic protein FlhF [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 552
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 15/139 (10%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-VVIVDTSNEIGGDGDVPHSGI 269
D +E GG I ++GP G GKTT I ++A+ A H R V +V T + G + HS
Sbjct: 337 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHTPRDVALVTTDTQRVGGREQLHS-Y 395
Query: 270 GRARRMQVPNVNMQHSV--MIEAVENHMPETIIIDE--IGTELEALAASTIAQRGVQLV- 324
GR + V + S+ + E + ++ + ++ID +G ALAA R Q V
Sbjct: 396 GRQLGVAVHEADSAESLLDLFERLRDY--KLVLIDTAGMGQRDRALAAQLNWLRAAQQVT 453
Query: 325 ------GTAHGMTIDNIVK 337
AH +D +V+
Sbjct: 454 SLLVLPANAHFSDLDEVVR 472
>gi|358449790|ref|ZP_09160270.1| type II secretion system protein E [Marinobacter manganoxydans
MnI7-9]
gi|357226015|gb|EHJ04500.1| type II secretion system protein E [Marinobacter manganoxydans
MnI7-9]
Length = 760
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 125/315 (39%), Gaps = 57/315 (18%)
Query: 42 SSFRRTRRARKTFVSQKPTPPSIHPPTVRRPSDWAP-PRNGSVSDSPNSA-------STS 93
S+ T + R+ Q+PTP PT + P+N VS S + S
Sbjct: 315 SALDLTAKGRRFAADQEPTPNQAADPTGSKDQLLGKDPKNKHVSPYLVSVYEAILMDAVS 374
Query: 94 RSGADIELELFLELLPSRMRRELCMH---------RELGDLIEVVMDLGRKPLA--RFPS 142
+DI +E + + + R+R + +H RE+ +I V+ +A R P
Sbjct: 375 EKASDIHIEQYGDRIRIRLRVDGDLHDLPQYQLSPREIKGVINVIKLRAELNIAEHRLPQ 434
Query: 143 GDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRA 202
G + ++GD + D R SLH +A VI L + GRA
Sbjct: 435 G--------------GRSRLQLGDMAYDLRIQTQPSLHGENA-------VIRLLPQTGRA 473
Query: 203 VA----GSAEIICD-----LVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVD 253
+ G + +I L G +LV+GP G GK+T + + LADD ++V+ V+
Sbjct: 474 MTIAELGMSSMIGARYQRLLDNPAGLVLVVGPTGSGKSTTLYAGLQTLADDGRRKVITVE 533
Query: 254 TSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAA 313
E D I + R + + + A P+ I++ EI + AL A
Sbjct: 534 DPIEYSID------NIQQTRVRS--EIGFGFADAMRAFVREDPDVILVGEIRDQETALEA 585
Query: 314 STIAQRGVQLVGTAH 328
+Q G ++ T H
Sbjct: 586 IRASQTGHVVLSTLH 600
>gi|195012119|ref|XP_001983484.1| GH15919 [Drosophila grimshawi]
gi|193896966|gb|EDV95832.1| GH15919 [Drosophila grimshawi]
Length = 331
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNEIGGD 261
+I++ GPPGVGKTT I+ +AR+L D K V+ ++ SNE G D
Sbjct: 51 NIIIAGPPGVGKTTTIQCLARILLGDSYKDAVLELNASNERGID 94
>gi|195135525|ref|XP_002012183.1| GI16571 [Drosophila mojavensis]
gi|193918447|gb|EDW17314.1| GI16571 [Drosophila mojavensis]
Length = 331
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNEIGGD 261
+I++ GPPGVGKTT I+ +AR+L D K V+ ++ SNE G D
Sbjct: 51 NIIIAGPPGVGKTTTIQCLARILLGDSYKDAVLELNASNERGID 94
>gi|195375032|ref|XP_002046307.1| GJ12823 [Drosophila virilis]
gi|194153465|gb|EDW68649.1| GJ12823 [Drosophila virilis]
Length = 331
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNEIGGD 261
+I++ GPPGVGKTT I+ +AR+L D K V+ ++ SNE G D
Sbjct: 51 NIIIAGPPGVGKTTTIQCLARILLGDSYKDAVLELNASNERGID 94
>gi|390940075|ref|YP_006403812.1| DNA repair protein RadA [Sulfurospirillum barnesii SES-3]
gi|390193182|gb|AFL68237.1| DNA repair protein RadA [Sulfurospirillum barnesii SES-3]
Length = 450
Score = 42.7 bits (99), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 23/121 (19%)
Query: 198 RVGRAVAGSAEIICDLVEGGGSI-----LVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252
++ R +G E+ DLV GGG + L+ G PGVGK+TL+ +IA LA + K+V+ V
Sbjct: 68 QIERFSSGDTEL--DLVLGGGIVQGSLTLIGGSPGVGKSTLLLKIAGNLAREG-KKVLYV 124
Query: 253 DTSNEIGGDGDVPHSGIG-RARRM--QVPNVNMQHSVMIEAV----ENHMPETIIIDEIG 305
G+ S I RA R+ PN+ + + ++ + E H E +IID I
Sbjct: 125 --------SGEESSSQIKMRANRVDSNYPNLYLLSEIRLDTIFKELEKHAFEVLIIDSIQ 176
Query: 306 T 306
T
Sbjct: 177 T 177
>gi|148543788|ref|YP_001271158.1| type II secretion system protein E [Lactobacillus reuteri DSM
20016]
gi|184153194|ref|YP_001841535.1| competence protein [Lactobacillus reuteri JCM 1112]
gi|227363232|ref|ZP_03847364.1| competence protein ComGA [Lactobacillus reuteri MM2-3]
gi|325682160|ref|ZP_08161678.1| competence protein ComGA [Lactobacillus reuteri MM4-1A]
gi|148530822|gb|ABQ82821.1| type II secretion system protein E [Lactobacillus reuteri DSM
20016]
gi|183224538|dbj|BAG25055.1| competence protein [Lactobacillus reuteri JCM 1112]
gi|227071688|gb|EEI09979.1| competence protein ComGA [Lactobacillus reuteri MM2-3]
gi|324978804|gb|EGC15753.1| competence protein ComGA [Lactobacillus reuteri MM4-1A]
Length = 325
Score = 42.7 bits (99), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 29/201 (14%)
Query: 154 HEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDL 213
H+ + +S VGD+ S + R ++ ++ IR + V EI+
Sbjct: 81 HQKINLRLSSVGDY-QGRESLVIRFIYPLNDIRFNFL------------VPHQWEILQKY 127
Query: 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRAR 273
+ G IL GP G GKTT + ++AR L + V+ ++ EI G +
Sbjct: 128 RQQRGLILFAGPMGAGKTTTMYQLARQLLPKQI--VLTIEDPVEIDHPGFI--------- 176
Query: 274 RMQVPNV-NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTI 332
++QV + M + +++ H P+ II EI A + A G ++GT H
Sbjct: 177 QLQVNELAGMDYESLLKLGLRHRPDVFIIGEIRDSQTAAMSVQAALSGHLVLGTIHARNA 236
Query: 333 DNIVKNPSLQILVGGIESVTL 353
+V LQ L GI+S L
Sbjct: 237 YGVVSR--LQQL--GIDSYYL 253
>gi|389579336|ref|ZP_10169363.1| P-type conjugative transfer ATPase TrbB [Desulfobacter postgatei
2ac9]
gi|389400971|gb|EIM63193.1| P-type conjugative transfer ATPase TrbB [Desulfobacter postgatei
2ac9]
Length = 308
Score = 42.7 bits (99), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 23/146 (15%)
Query: 185 IRNRKMQVIGL--TCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTL----IREIA 238
IR + +++ L R G +IICD + +ILV+G G GKTTL + E+A
Sbjct: 104 IRKKAIRIFTLDNYVRSGTMSPDQQQIICDAIANKKNILVVGGTGSGKTTLTNAILAELA 163
Query: 239 RMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRM--QVPNVNMQHSVMIEAVENHMP 296
+ D+ R+VI++ ++E+ + + + M N NMQH +++A P
Sbjct: 164 NIAGDE---RLVIIEDTSEL--------QCLSKNKVMLRTNQNTNMQH--LLKATMRLRP 210
Query: 297 ETIIIDEI--GTELEALAASTIAQRG 320
+ I++ E+ G L+ L A G
Sbjct: 211 DRIVVGEVRGGEALDLLKAWNTGHPG 236
>gi|227544184|ref|ZP_03974233.1| competence protein ComGA [Lactobacillus reuteri CF48-3A]
gi|338204136|ref|YP_004650281.1| competence protein [Lactobacillus reuteri SD2112]
gi|227185820|gb|EEI65891.1| competence protein ComGA [Lactobacillus reuteri CF48-3A]
gi|336449376|gb|AEI57991.1| competence protein [Lactobacillus reuteri SD2112]
Length = 325
Score = 42.7 bits (99), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 29/201 (14%)
Query: 154 HEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDL 213
H+ + +S VGD+ S + R ++ ++ IR + V EI+
Sbjct: 81 HQKINLRLSSVGDY-QGRESLVIRFIYPLNDIRFNFL------------VPHQWEILQKY 127
Query: 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRAR 273
+ G IL GP G GKTT + ++AR L + V+ ++ EI G +
Sbjct: 128 RQQRGLILFAGPMGAGKTTTMYQLARQLLPKQI--VLTIEDPVEIDHPGFI--------- 176
Query: 274 RMQVPNV-NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTI 332
++QV + M + +++ H P+ II EI A + A G ++GT H
Sbjct: 177 QLQVNELAGMDYESLLKLGLRHRPDVFIIGEIRDSQTAAMSVQAALSGHLVLGTIHARNA 236
Query: 333 DNIVKNPSLQILVGGIESVTL 353
+V LQ L GI+S L
Sbjct: 237 YGVVSR--LQQL--GIDSYYL 253
>gi|385332031|ref|YP_005885982.1| type IV-A pilus assembly ATPase PilB [Marinobacter adhaerens HP15]
gi|311695181|gb|ADP98054.1| type IV-A pilus assembly ATPase PilB [Marinobacter adhaerens HP15]
Length = 760
Score = 42.7 bits (99), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 124/315 (39%), Gaps = 57/315 (18%)
Query: 42 SSFRRTRRARKTFVSQKPTPPSIHPPTVRRPSDWAP-PRNGSVSDSPNSA-------STS 93
S+ T + R+ Q+PTP PT + P+N VS S + S
Sbjct: 315 SALDLTAKGRRFAADQEPTPNQTADPTGSKDQLLGKDPKNKHVSPYLVSVYEAILMDAVS 374
Query: 94 RSGADIELELFLELLPSRMRRELCMH---------RELGDLIEVVMDLGRKPLA--RFPS 142
+DI +E + + + R+R + +H RE+ +I V+ +A R P
Sbjct: 375 EKASDIHIEQYGDRIRIRLRVDGDLHDLPQYQLSAREMKGVINVIKLRAELNIAEHRLPQ 434
Query: 143 GDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRA 202
G + ++GD + D R SLH A VI L + GRA
Sbjct: 435 G--------------GRSRLQLGDMAYDLRIQTQPSLHGEHA-------VIRLLPQTGRA 473
Query: 203 VA----GSAEIICD-----LVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVD 253
+ G + +I L G +LV+GP G GK+T + + LADD ++V+ V+
Sbjct: 474 MTIAELGMSSMIGARYQRLLDNPAGLVLVVGPTGSGKSTTLYAGLQTLADDGRRKVITVE 533
Query: 254 TSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAA 313
E D I + R + + + A P+ I++ EI + AL A
Sbjct: 534 DPIEYSID------NIQQTRVRS--EIGFGFADAMRAFVREDPDVILVGEIRDQETALEA 585
Query: 314 STIAQRGVQLVGTAH 328
+Q G ++ T H
Sbjct: 586 IRASQTGHVVLSTLH 600
>gi|418035514|ref|ZP_12673971.1| hypothetical protein LDBUL1519_00671 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354690503|gb|EHE90451.1| hypothetical protein LDBUL1519_00671 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 333
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 210 ICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGI 269
+ DL G I+ GP G GKTT + E+AR L+ M V+ ++ E+ +
Sbjct: 134 LVDLCWLRGMIVTSGPTGSGKTTTMYELARKLSQTKM--VMTIEDPVEVYEESFFQAQVN 191
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHG 329
AR + ++ +++A H P+ +II EI E A A A G ++ T H
Sbjct: 192 AGAR--------ISYASLLKAALRHRPDVLIIGEIRDEETAHLAVDAALSGHLVLATVHA 243
Query: 330 M-TIDNIVKNPSLQI----LVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMIS 384
T I + SL + LV + +V+ Q+ + +KGP C +++ S
Sbjct: 244 KSTYQTISRLESLGVKNNELVNCLTAVS----------YQRLLPGKKGP---ACLLDLAS 290
Query: 385 R 385
R
Sbjct: 291 R 291
>gi|313679913|ref|YP_004057652.1| DNA repair protein rada [Oceanithermus profundus DSM 14977]
gi|313152628|gb|ADR36479.1| DNA repair protein RadA [Oceanithermus profundus DSM 14977]
Length = 428
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 23/131 (17%)
Query: 201 RAVAGSAEIICDLVEGGG-----SILVIGPPGVGKTTLIREIA-RMLADDHMKRVVIVDT 254
R +GS E+ D V GGG ++L+ G PGVGK+TL+ ++A R+L KRVV V
Sbjct: 64 RYSSGSEEV--DRVLGGGFVPGAALLIGGEPGVGKSTLLLQVADRVLKSG--KRVVYVAG 119
Query: 255 SNEIGGDGDVPHSGIGRARRMQV-PNVNMQHSVMIEAV----ENHMPETIIIDEIGT-EL 308
P RA R+ V P + + ++AV + H P+ +++D I T E
Sbjct: 120 EES-------PQQVKLRAERLGVSPRLELMRDTRLDAVLAGLDAHAPDLVVVDSIQTLES 172
Query: 309 EALAASTIAQR 319
E + S +A R
Sbjct: 173 EGVPGSLVAVR 183
>gi|323694040|ref|ZP_08108222.1| ATP-dependent chaperone ClpB [Clostridium symbiosum WAL-14673]
gi|355625351|ref|ZP_09048214.1| chaperone ClpB 2 [Clostridium sp. 7_3_54FAA]
gi|323501896|gb|EGB17776.1| ATP-dependent chaperone ClpB [Clostridium symbiosum WAL-14673]
gi|354821378|gb|EHF05766.1| chaperone ClpB 2 [Clostridium sp. 7_3_54FAA]
Length = 860
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Query: 138 ARFPSGDWVISEQIVKHEDLKHAISK-----VGDFSDDNRSGIDRSLHRISAIRNRKMQV 192
AR S D + + V E++ ISK V ++ RS ++LH + R +
Sbjct: 517 ARVKSQDMSLVHESVTDEEIARIISKWTGIPVAKLTESERS---KTLHMDEILHKRVIGQ 573
Query: 193 IGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVI 251
+V AV S I D + GS L +GP GVGKT L + +A L DD V I
Sbjct: 574 DEAVTKVTEAVIRSKAGIKDPTKPIGSFLFLGPTGVGKTELAKALAESLFDDENNMVRI 632
>gi|323485146|ref|ZP_08090497.1| hypothetical protein HMPREF9474_02248 [Clostridium symbiosum
WAL-14163]
gi|323401465|gb|EGA93812.1| hypothetical protein HMPREF9474_02248 [Clostridium symbiosum
WAL-14163]
Length = 860
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Query: 138 ARFPSGDWVISEQIVKHEDLKHAISK-----VGDFSDDNRSGIDRSLHRISAIRNRKMQV 192
AR S D + + V E++ ISK V ++ RS ++LH + R +
Sbjct: 517 ARVKSQDMSLVHESVTDEEIARIISKWTGIPVAKLTESERS---KTLHMDEILHKRVIGQ 573
Query: 193 IGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVI 251
+V AV S I D + GS L +GP GVGKT L + +A L DD V I
Sbjct: 574 DEAVTKVTEAVIRSKAGIKDPTKPIGSFLFLGPTGVGKTELAKALAESLFDDENNMVRI 632
>gi|289670569|ref|ZP_06491644.1| flagellar biosynthesis regulator FlhF, partial [Xanthomonas
campestris pv. musacearum NCPPB 4381]
Length = 486
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-VVIVDTSNEIGGDGDVPHSGI 269
D +E GG I ++GP G GKTT I ++A+ A H R V +V T + G + HS
Sbjct: 346 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHS-Y 404
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE--IGTELEALAASTIAQRGVQLV--- 324
GR + V + S++ + ++ID +G ALAA R Q V
Sbjct: 405 GRQLGIAVHEADSAESLLELLERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAAQQVTSL 464
Query: 325 ----GTAHGMTIDNIVK 337
AH +D +V+
Sbjct: 465 LVLPANAHFSDLDEVVR 481
>gi|433676470|ref|ZP_20508574.1| Signal recognition 54 kDa protein [Xanthomonas translucens pv.
translucens DSM 18974]
gi|430818408|emb|CCP38874.1| Signal recognition 54 kDa protein [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 310
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIG 270
D +E GG I +IGP G GKTT I ++A + H R V + T++ I G G
Sbjct: 95 LDPIEEGGVIALIGPTGAGKTTTIAKLASRFLERHAARDVALVTTDTIRVGGREQLHSYG 154
Query: 271 RARRMQVPNVNMQHSV--MIEAVENHMPETIIIDEIG---------TELEALAASTIAQR 319
R + V + ++ ++E + ++ + ++ID G +L L AS + +
Sbjct: 155 RQLGIAVHEADSDAALQQLLERLRDY--KLVLIDTAGMGQRDRALAAQLHWLRASRVVRS 212
Query: 320 GVQLVGTAHGMTIDNIVK 337
+ L AH +D +V+
Sbjct: 213 LLVLPANAHFSDLDEVVR 230
>gi|328771926|gb|EGF81965.1| hypothetical protein BATDEDRAFT_31536 [Batrachochytrium
dendrobatidis JAM81]
Length = 898
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 25/97 (25%)
Query: 171 NRSGIDRSLHRISAIRNRKMQVIG------------LTCRVGRAVAGSAEIICDLVEGGG 218
N+S +DR +H A+ R V+G L R G ++GS I G
Sbjct: 562 NKSQVDRLIHLADALHKR---VVGQDKAVKAVADAVLRSRAG--LSGSGTI--------G 608
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
S L +GP GVGKT L + +A L DD K ++ +D S
Sbjct: 609 SFLFLGPTGVGKTELAKTLAHELFDDDKKGLLRIDMS 645
>gi|104773768|ref|YP_618748.1| competence protein ComGA [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116513772|ref|YP_812678.1| Type II secretory pathway/competence component, ATPase
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|103422849|emb|CAI97507.1| Putative competence protein ComGA [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116093087|gb|ABJ58240.1| Type II secretory pathway/competence component, ATPase
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
Length = 323
Score = 42.4 bits (98), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 210 ICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGI 269
+ DL G I+ GP G GKTT + E+AR L+ M V+ ++ E+ +
Sbjct: 124 LVDLCWLRGMIVTSGPTGSGKTTTMYELARKLSQTKM--VMTIEDPVEVYEESFFQAQVN 181
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHG 329
AR + ++ +++A H P+ +II EI E A A A G ++ T H
Sbjct: 182 AGAR--------ISYASLLKAALRHRPDVLIIGEIRDEETAHLAVDAALSGHLVLATVHA 233
Query: 330 M-TIDNIVKNPSLQI----LVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMIS 384
T I + SL + LV + +V+ Q+ + +KGP C +++ S
Sbjct: 234 KSTYQTISRLESLGVKNNELVNCLTAVS----------YQRLLPGKKGP---ACLLDLAS 280
Query: 385 R 385
R
Sbjct: 281 R 281
>gi|421765798|ref|ZP_16202579.1| Late competence protein ComGA, access of DNA to ComEA [Lactococcus
garvieae DCC43]
gi|407625883|gb|EKF52571.1| Late competence protein ComGA, access of DNA to ComEA [Lactococcus
garvieae DCC43]
Length = 316
Score = 42.4 bits (98), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 29/177 (16%)
Query: 161 ISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSI 220
+S VGDF + N S + R LH N K + +I +L+EG G
Sbjct: 95 LSTVGDF-EGNESLVIRLLH------NGK----------DKLSFWQKDIYNNLIEGRGLY 137
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNV 280
L GP G GKT+L+ E AR + ++V+ ++ E+ PH ++QV V
Sbjct: 138 LFSGPVGSGKTSLMYECARRHFQE--QQVICIEDPVEL----VEPH-----FLQLQVNKV 186
Query: 281 -NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336
+ +I+ H P+ +I+ EI + A A + G + T H +I +V
Sbjct: 187 IGNDYDALIKLSLRHRPDLLIVGEIRDKQTAKAVLRASLTGYTVFSTVHAKSIPGVV 243
>gi|421492901|ref|ZP_15940260.1| hypothetical protein MU9_1430 [Morganella morganii subsp. morganii
KT]
gi|455740391|ref|YP_007506657.1| ATP-dependent protease [Morganella morganii subsp. morganii KT]
gi|400193006|gb|EJO26143.1| hypothetical protein MU9_1430 [Morganella morganii subsp. morganii
KT]
gi|455421954|gb|AGG32284.1| ATP-dependent protease [Morganella morganii subsp. morganii KT]
Length = 785
Score = 42.4 bits (98), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+I VK +K + K + D + G++R ++ R ++ + + R+ +
Sbjct: 296 DWMIQVPWVKRSKVKKDLLKAQEILDSDHYGLER-------VKERILEYLAVQSRISKI- 347
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
I+C ++GPPGVGKT+L + IAR
Sbjct: 348 --KGPILC----------LVGPPGVGKTSLGQSIAR 371
>gi|365538380|ref|ZP_09363555.1| ATP-dependent protease LA [Vibrio ordalii ATCC 33509]
Length = 783
Score = 42.4 bits (98), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+++ K +K ++K D + + G+DR ++ R ++ + + R+ +
Sbjct: 295 DWMVNVPWAKRSKVKKDLAKAEDILNADHYGLDR-------VKERILEYLAVQSRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>gi|410087014|ref|ZP_11283719.1| ATP-dependent protease [Morganella morganii SC01]
gi|409766243|gb|EKN50337.1| ATP-dependent protease [Morganella morganii SC01]
Length = 785
Score = 42.4 bits (98), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+I VK +K + K + D + G++R ++ R ++ + + R+ +
Sbjct: 296 DWMIQVPWVKRSKVKKDLLKAQEILDSDHYGLER-------VKERILEYLAVQSRISKI- 347
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
I+C ++GPPGVGKT+L + IAR
Sbjct: 348 --KGPILC----------LVGPPGVGKTSLGQSIAR 371
>gi|289666122|ref|ZP_06487703.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 561
Score = 42.4 bits (98), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-VVIVDTSNEIGGDGDVPHSGI 269
D +E GG I ++GP G GKTT I ++A+ A H R V +V T + G + HS
Sbjct: 346 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHS-Y 404
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE--IGTELEALAASTIAQRGVQLV--- 324
GR + V + S++ + ++ID +G ALAA R Q V
Sbjct: 405 GRQLGIAVHEADSAESLLELLERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAAQQVTSL 464
Query: 325 ----GTAHGMTIDNIVK 337
AH +D +V+
Sbjct: 465 LVLPANAHFSDLDEVVR 481
>gi|319774923|ref|YP_004134192.1| type II secretion system protein E [Thermovibrio ammonificans HB-1]
gi|317115271|gb|ADU97760.1| type II secretion system protein E [Thermovibrio ammonificans HB-1]
Length = 528
Score = 42.4 bits (98), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 13/118 (11%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRAR-RMQ 276
G ILV+GP G GK+TLIR +A ++AD +++V ++ E ++P G+ + R+
Sbjct: 258 GMILVVGPTGSGKSTLIRAMA-LMADPEKRKIVSIEDPVE----AEIP--GVQQVEVRLP 310
Query: 277 VPN-----VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHG 329
V + + + + I A P+ I++ EI A AA + G L+ T H
Sbjct: 311 VYDDDGKLIGIDFAHAIRAFMRQNPDVILVGEIRDRETARAAIAASNTGHLLISTLHA 368
>gi|254785488|ref|YP_003072917.1| flagellar biosynthetic protein FlhF [Teredinibacter turnerae T7901]
gi|237684381|gb|ACR11645.1| flagellar biosynthetic protein FlhF [Teredinibacter turnerae T7901]
Length = 506
Score = 42.4 bits (98), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 19/205 (9%)
Query: 212 DLVEGGGSILVIGPPGVGKTTLIREI-ARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIG 270
DLV+ GG +G GVGKTT I ++ AR + D +V ++ T G D S +G
Sbjct: 294 DLVQQGGVFAFVGQTGVGKTTTIAKLAARYVLDHGPGKVALITTDTYRVGAYDQLRS-LG 352
Query: 271 RARRMQVPNVNMQHSVM-IEAVENHMPETIIIDEIG---------TELEALAASTIAQRG 320
R + V V+ +HS++ + A P I+ID G +L L + +R
Sbjct: 353 RILNVPVRAVDAEHSLLRVLASLKQFP-LILIDTAGFRHGDPLLKEQLRKLDSCPAVKRV 411
Query: 321 VQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLG--DEEAKKRKVQKTILERKGPPTFTC 378
+ L + T+ + + GI++ L DE A + ++ER+ P +T
Sbjct: 412 LVLACNSQRQTMTASTHAYASR---QGIDACVLTKLDEAASLGEALSVLVERQLPVAYTT 468
Query: 379 AVEMISRTECRVH-HRLDATVDAIL 402
+ I R R H+L A+ A+L
Sbjct: 469 NGQEIPRDIARASAHQLVASAVALL 493
>gi|134097192|ref|YP_001102853.1| FtsK/SpoIIIE family protein [Saccharopolyspora erythraea NRRL 2338]
gi|133909815|emb|CAL99927.1| FtsK/SpoIIIE family protein [Saccharopolyspora erythraea NRRL 2338]
Length = 1268
Score = 42.4 bits (98), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 169 DDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGR----AVAGSAEIICDLVEGGGSILVIG 224
D G D + + +R R GL +GR A DL GG++LV+G
Sbjct: 742 DQAAGGFDVT---VDGLRLRDTGAAGLPVPMGRLDDPARQWQGTWTLDLSSAGGNLLVLG 798
Query: 225 PPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGD----GDVPHSG 268
PG GKTT +R +A LA H + + + +G D+PH G
Sbjct: 799 GPGAGKTTALRTLALGLACAHRPTDIGIYGIDLLGSGMRALADLPHVG 846
>gi|430750198|ref|YP_007213106.1| stage III sporulation protein AA [Thermobacillus composti KWC4]
gi|430734163|gb|AGA58108.1| stage III sporulation protein AA [Thermobacillus composti KWC4]
Length = 331
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 219 SILVIGPPGVGKTTLIREIARMLA----------DDHMKRVVIVDTSNEIGGD-GDVPHS 267
S L++ PP GKTT++R+I R ++ D ++V +VD +EI VP
Sbjct: 154 STLIVAPPQQGKTTMLRDIIRSVSYGSWPMPEARDWPARKVGVVDERSEIAACVRGVPVF 213
Query: 268 GIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTA 327
+G R V + + M+ + + PE + DEIG +A A A GV ++ TA
Sbjct: 214 DVGP--RTDVLDACPKAEGMMMLLRSMSPELLAADEIGRPEDAEAIREAAHAGVPVIATA 271
Query: 328 HGMTIDNIVKNPSLQILV 345
H + + +++ L+
Sbjct: 272 HASDLQDARGRTAIRRLI 289
>gi|300811959|ref|ZP_07092419.1| DNA repair protein RadA [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300497076|gb|EFK32138.1| DNA repair protein RadA [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 458
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 66/115 (57%), Gaps = 16/115 (13%)
Query: 200 GRAVAGSAEIICDLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIV-- 252
GR + S+E+ + V GGG +L+ G PG+GK+TL+ +I LA+ + +V+ V
Sbjct: 73 GRVLTKSSEL--NRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSELAEKY--KVLYVSG 128
Query: 253 -DTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
+++++I D G+G++ + P NM+H + + +++ P+ ++ID I T
Sbjct: 129 EESASQIKLRAD--RLGLGQSPMLLYPESNMEH--IRDQIDDVKPDFVVIDSIQT 179
>gi|291005350|ref|ZP_06563323.1| FtsK/SpoIIIE family protein [Saccharopolyspora erythraea NRRL 2338]
Length = 1306
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 169 DDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGR----AVAGSAEIICDLVEGGGSILVIG 224
D G D + + +R R GL +GR A DL GG++LV+G
Sbjct: 780 DQAAGGFDVT---VDGLRLRDTGAAGLPVPMGRLDDPARQWQGTWTLDLSSAGGNLLVLG 836
Query: 225 PPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGD----GDVPHSG 268
PG GKTT +R +A LA H + + + +G D+PH G
Sbjct: 837 GPGAGKTTALRTLALGLACAHRPTDIGIYGIDLLGSGMRALADLPHVG 884
>gi|308813883|ref|XP_003084247.1| quinoprotein (ISS) [Ostreococcus tauri]
gi|116056131|emb|CAL58312.1| quinoprotein (ISS) [Ostreococcus tauri]
Length = 840
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 604 AIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLA 639
A+E +VIP E VELLPR S I+A Q LV++Y L+
Sbjct: 801 AVEQLVIPHREPVELLPRSSRIIAMQQALVDTYSLS 836
>gi|320107371|ref|YP_004182961.1| ABC transporter-like protein [Terriglobus saanensis SP1PR4]
gi|319925892|gb|ADV82967.1| ABC transporter related protein [Terriglobus saanensis SP1PR4]
Length = 582
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 29/181 (16%)
Query: 194 GLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVV 250
GLT R G +AEI+ D+ + G S+ ++GP G GK+TL+ + R+L D +V
Sbjct: 342 GLTFRYG-----AAEILRDIDLTIPAGTSLAIVGPTGSGKSTLVNLVPRLL--DAEAGMV 394
Query: 251 IVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMI---------EAVENHMPETIII 301
++D GIG VP S I EA + E +
Sbjct: 395 LIDGRPIREWSLAQLREGIG-----FVPQETFLFSTSIRDNISFGVREATPAQVREAAVS 449
Query: 302 DEIGTELEALAA---STIAQRGVQLVGTAHGMT--IDNIVKNPSLQILVGGIESVTLGDE 356
I TE+E A + + +RG+ L G T +++NP + IL + SV E
Sbjct: 450 AHIATEIEEFPAGFDTLVGERGITLSGGQKQRTSIARALLRNPRILILDDALASVDTYTE 509
Query: 357 E 357
E
Sbjct: 510 E 510
>gi|421147451|ref|ZP_15607139.1| competence protein ComGA [Streptococcus agalactiae GB00112]
gi|401685883|gb|EJS81875.1| competence protein ComGA [Streptococcus agalactiae GB00112]
Length = 323
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHS 267
E++C G L GP G GKTTL+ ++A + + K+++ ++ EI D
Sbjct: 127 EVLC----ARGLYLFSGPVGSGKTTLMYQLASEVFKN--KQIITIEDPVEIKND------ 174
Query: 268 GIGRARRMQV-PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
+ ++Q+ ++ M + +I+ H P+ +II EI + A A + GV + T
Sbjct: 175 ---KMLQLQLNEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFST 231
Query: 327 AHGMTI 332
H +I
Sbjct: 232 IHAKSI 237
>gi|300813117|ref|ZP_07093495.1| type II/IV secretion system protein [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300495958|gb|EFK31102.1| type II/IV secretion system protein [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 323
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 30/182 (16%)
Query: 210 ICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGI 269
+ DL G I+ GP G GKTT + E+AR L+ M V+ ++ E+ +
Sbjct: 124 LVDLCWLRGMIVTSGPTGSGKTTTMYELARKLSQTKM--VMTIEDPVEVYEESFF----- 176
Query: 270 GRARRMQV-PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAH 328
+ QV + ++ +++A H P+ +II EI E A A A G ++ T H
Sbjct: 177 ----QAQVNAGAGISYASLLKAALRHRPDALIIGEIRDEETAHLAVDAALSGHLVLATVH 232
Query: 329 GM-TIDNIVKNPSLQI----LVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMI 383
T I + SL + LV + +V+ Q+ + +KGP C +++
Sbjct: 233 AKSTYQTISRLESLGVKNNELVNCLTAVS----------YQRLLPGKKGP---ACLLDLA 279
Query: 384 SR 385
SR
Sbjct: 280 SR 281
>gi|392960834|ref|ZP_10326299.1| stage III sporulation protein AA [Pelosinus fermentans DSM 17108]
gi|421054408|ref|ZP_15517376.1| stage III sporulation protein AA [Pelosinus fermentans B4]
gi|421057110|ref|ZP_15520000.1| stage III sporulation protein AA [Pelosinus fermentans B3]
gi|421067733|ref|ZP_15529177.1| stage III sporulation protein AA [Pelosinus fermentans A12]
gi|421071270|ref|ZP_15532390.1| stage III sporulation protein AA [Pelosinus fermentans A11]
gi|392440766|gb|EIW18426.1| stage III sporulation protein AA [Pelosinus fermentans B4]
gi|392447186|gb|EIW24440.1| stage III sporulation protein AA [Pelosinus fermentans A11]
gi|392448088|gb|EIW25292.1| stage III sporulation protein AA [Pelosinus fermentans A12]
gi|392454731|gb|EIW31553.1| stage III sporulation protein AA [Pelosinus fermentans DSM 17108]
gi|392463665|gb|EIW39564.1| stage III sporulation protein AA [Pelosinus fermentans B3]
Length = 333
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 15/159 (9%)
Query: 194 GLTCRVGRAVAGSA-EIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLADDHMKR- 248
GL R+ R V G A +II ++ G +L +I PP GKTT++R++ R ++
Sbjct: 136 GLNIRLAREVKGCADQIIPYIITKEGQVLNTLIISPPRCGKTTILRDLIRQISMGSKIYK 195
Query: 249 ---VVIVDTSNEIGGDGDVPHSGIGRAR---RMQVPNVNMQHSVMIEAVENHMPETIIID 302
V +VD +EI SGI R V + + M+ + + P + D
Sbjct: 196 GLPVGVVDERSEIAA----CKSGISTVDLGIRTDVLDNCPKAMGMLMLIRSMSPAVVATD 251
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSL 341
E+G + A GV +V T HG ++ ++ P +
Sbjct: 252 ELGRAEDIHAVREALNAGVSVVTTVHGKDLNELLHRPYI 290
>gi|313124355|ref|YP_004034614.1| DNA repair protein rada [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280918|gb|ADQ61637.1| DNA repair protein radA [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 458
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 66/115 (57%), Gaps = 16/115 (13%)
Query: 200 GRAVAGSAEIICDLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIV-- 252
GR + S+E+ + V GGG +L+ G PG+GK+TL+ +I LA+ + +V+ V
Sbjct: 73 GRVLTKSSEL--NRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSELAEKY--KVLYVSG 128
Query: 253 -DTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
+++++I D G+G++ + P NM+H + + +++ P+ ++ID I T
Sbjct: 129 EESASQIKLRAD--RLGLGQSPMLLYPESNMEH--IRDQIDDVKPDFVVIDSIQT 179
>gi|343510444|ref|ZP_08747671.1| hypothetical protein VIS19158_08830 [Vibrio scophthalmi LMG 19158]
gi|342801959|gb|EGU37407.1| hypothetical protein VIS19158_08830 [Vibrio scophthalmi LMG 19158]
Length = 341
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 24/148 (16%)
Query: 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRAR 273
++ G +I+V G G GKTTL+R +AR + ++R+V+ + + E+ +
Sbjct: 150 IKDGKTIIVSGNTGSGKTTLLRALARYIP--LIERIVVCEDTQEL------YLVWLPFCV 201
Query: 274 RMQVP---NVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGM 330
M+ P N N++ +IEA P+ I + EI ++ A +Q + T H
Sbjct: 202 SMEAPKRSNSNIEMKNLIEAALRMRPDRIWVGEI-------RKASAADAFIQAINTGHSG 254
Query: 331 TIDNIVKNPS------LQILVGGIESVT 352
+ + N + LQ L+ + S+T
Sbjct: 255 CVTTLHANSAKDALSRLQYLIASLGSIT 282
>gi|149910318|ref|ZP_01898962.1| ATP-dependent protease La [Moritella sp. PE36]
gi|149806678|gb|EDM66645.1| ATP-dependent protease La [Moritella sp. PE36]
Length = 741
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+IS K +K I+K + D + G+D+ ++ R ++ + + RV +
Sbjct: 254 DWMISVPWKKRSKVKKDIAKALEVLDADHYGLDK-------VKERILEYLAVQSRVNKL- 305
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
I+C ++GPPGVGKT+L + IA+
Sbjct: 306 --KGPILC----------LVGPPGVGKTSLGQSIAK 329
>gi|397779424|ref|YP_006543897.1| KH domain-containing protein [Methanoculleus bourgensis MS2]
gi|396937926|emb|CCJ35181.1| KH domain-containing protein MJ1533 [Methanoculleus bourgensis MS2]
Length = 627
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 25/126 (19%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
+L+ GPPG GKTTL + +A LAD IV T R +QVP
Sbjct: 262 GVLIAGPPGAGKTTLAQSLATFLADHDF----IVKTMEA--------------PRDLQVP 303
Query: 279 NVNMQHSVMIEAVENHM-------PETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331
+ Q++ + ++ N P+ +I DE+ + + + G+ +VG H M
Sbjct: 304 DHITQYTALEGSMANTAEALLLVRPDYVIFDELRKSEDFSVYADMRLAGMGMVGVVHAME 363
Query: 332 IDNIVK 337
+ + ++
Sbjct: 364 VHDCLQ 369
>gi|344209291|ref|YP_004794432.1| ATPase [Stenotrophomonas maltophilia JV3]
gi|343780653|gb|AEM53206.1| ATPase associated with various cellular activities AAA_3
[Stenotrophomonas maltophilia JV3]
Length = 328
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 13/72 (18%)
Query: 177 RSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEG---GGSILVIGPPGVGKTTL 233
R + R+ AIR+ VGRA G A+++ ++ GG +L+ G PG+GKT L
Sbjct: 14 RLIERVDAIRDA----------VGRAFIGQADVLDQILVALLAGGHVLIEGVPGLGKTLL 63
Query: 234 IREIARMLADDH 245
+R +A+ L D+
Sbjct: 64 VRALAQALELDY 75
>gi|167750486|ref|ZP_02422613.1| hypothetical protein EUBSIR_01462 [Eubacterium siraeum DSM 15702]
gi|167656637|gb|EDS00767.1| putative stage III sporulation protein AA [Eubacterium siraeum DSM
15702]
Length = 303
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGG--DGDVPHSGIGRARRMQV 277
+L++G GKTT++R++ R + M RV ++D EI +G P +G V
Sbjct: 150 LLIVGRALSGKTTILRDLCRCIGG--MFRVSLIDERQEIAAVYNGK-PCLDVGLM--TDV 204
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
+ + +I AV P+ I+ DE+G + E++ + G L+ TAH +I+ +
Sbjct: 205 FSGYGKSDGIIRAVRCMSPDYIVTDELGADAESIRQAV--NSGSGLIMTAHADSIEEAYR 262
Query: 338 NPSLQILV--GGIESVTL 353
N ++ ++ G I+ + L
Sbjct: 263 NEGIRTVIDSGAIQHIAL 280
>gi|119715777|ref|YP_922742.1| type II secretion system protein E [Nocardioides sp. JS614]
gi|119536438|gb|ABL81055.1| type II secretion system protein E [Nocardioides sp. JS614]
Length = 437
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 207 AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
A+ + LV +++V G GKTT++R +A + D +R++ V+ S E+G D D+ H
Sbjct: 204 ADFLAALVRARKNVMVAGATSAGKTTMLRALASEIGPD--ERILTVERSLELGLDEDLEH 261
Query: 267 SGIGRARRMQVPNVNMQHSV-MIEAVENHM---PETIIIDEI 304
A ++PNV +V M E V + + P +I+ E+
Sbjct: 262 HPNAIAFEERLPNVEGAGAVTMAELVRDTLRMNPSRVIVGEV 303
>gi|401828186|ref|XP_003888385.1| chaperone protease ATP binding subunit [Encephalitozoon hellem ATCC
50504]
gi|392999657|gb|AFM99404.1| chaperone protease ATP binding subunit [Encephalitozoon hellem ATCC
50504]
Length = 846
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 27/168 (16%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
G+ L++GP GVGKT L + +A L DD K ++++D S+ G + + IG +
Sbjct: 580 GAFLLLGPTGVGKTELAKAVAMELFDDE-KNMLVLDMSD-YGNEMSITKL-IGASAGYVG 636
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQL-----VGTAHGMTI 332
N + + E ++N I++DE+ LA T+ QL V G +
Sbjct: 637 YN---EGGALTEPIKNKPYSVILLDEVD-----LAHQTVLNVLYQLLDEGRVTDGKGTVV 688
Query: 333 D--NIV----KNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPP 374
D N V N +I+ + S LG+++ K+++++ +L R GPP
Sbjct: 689 DFRNCVLIMTSNLGQEII---LRSSELGEDD--KKEIERLVLNRFGPP 731
>gi|416213927|ref|ZP_11622620.1| DNA repair protein RadA [Neisseria meningitidis M01-240013]
gi|325144180|gb|EGC66487.1| DNA repair protein RadA [Neisseria meningitidis M01-240013]
Length = 473
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 94 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 147
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 148 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 190
>gi|291557678|emb|CBL34795.1| Uncharacterized protein conserved in bacteria [Eubacterium siraeum
V10Sc8a]
Length = 303
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGG--DGDVPHSGIGRARRMQV 277
+L++G GKTT++R++ R + M RV ++D EI +G P +G V
Sbjct: 150 LLIVGRALSGKTTILRDLCRCIGG--MFRVSLIDERQEIAAVYNGK-PCLDVGLM--TDV 204
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
+ + +I AV P+ I+ DE+G + E++ + G L+ TAH +I+ +
Sbjct: 205 FSGYGKTDGIIRAVRCMSPDYIVTDELGADAESIKQAV--NSGSGLIMTAHADSIEEAYR 262
Query: 338 NPSLQILV--GGIESVTL 353
N ++ ++ G I+ + L
Sbjct: 263 NEGIRTVIDSGAIQHIAL 280
>gi|386287809|ref|ZP_10064980.1| ATP-dependent protease La [gamma proteobacterium BDW918]
gi|385279319|gb|EIF43260.1| ATP-dependent protease La [gamma proteobacterium BDW918]
Length = 808
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +KH +++ + +++ G+D +++R ++ + + RV + V
Sbjct: 295 DWLVSIPWQKRSRVKHDLARAAEILNEDHYGLDE-------VKDRILEYLAVQKRV-KKV 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
G ++C ++GPPGVGKT+L IAR
Sbjct: 347 KGP--VLC----------LVGPPGVGKTSLGESIAR 370
>gi|384108276|ref|ZP_10009171.1| DNA repair protein RadA [Treponema sp. JC4]
gi|383870743|gb|EID86344.1| DNA repair protein RadA [Treponema sp. JC4]
Length = 453
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 103/262 (39%), Gaps = 54/262 (20%)
Query: 132 LGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQ 191
LGR P G+W E+I+ K+A+S G S+ SL + A N +
Sbjct: 23 LGRCP----ECGEWNSLEEIIID---KNAVSPAGRGSEKAEMQKPVSLESVEAAENVRFS 75
Query: 192 VIGLTCRVGRAVAGSAEIICDLVEGGGS-----ILVIGPPGVGKTTLIREIARMLADDHM 246
G AE D V GGG+ IL+ G PG+GK+TL+ + A A
Sbjct: 76 T------------GIAEF--DRVLGGGATKCSAILLGGEPGIGKSTLLLQTAASCAKSFG 121
Query: 247 KRVVIVDTSNEIGGDGDVPHSGIGRARRMQV--PNVNMQHSVMIEAVENHM----PETII 300
I+ S E + RA+R+Q+ N+N+ + +E N + P +I
Sbjct: 122 PESKILYVSGE-----ESAAQIKDRAKRLQLDCKNINLLCTNRLEDTLNALDKLNPTLVI 176
Query: 301 IDEIGTELEALAA-----------------STIAQRGVQLVGTAHGMTIDNIVKNPSLQI 343
+D I T A A + +R L+ TAH +I S++
Sbjct: 177 VDSIQTVYSAEAGIIPGTVNQLKYCANEFIQWVKERDSVLIMTAHVTKEGSIAGPKSMEH 236
Query: 344 LVGGIESVTLGDEEAKKRKVQK 365
+V + S D+E + QK
Sbjct: 237 MVDTVISFERNDDEIRFLHAQK 258
>gi|163751871|ref|ZP_02159085.1| ATP-dependent protease La [Shewanella benthica KT99]
gi|161328221|gb|EDP99385.1| ATP-dependent protease La [Shewanella benthica KT99]
Length = 785
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+IS K +K ++K D D + G+++ ++ R ++ + + RV +
Sbjct: 296 DWMISVPWHKRSKIKRDLAKAQDVLDADHFGLEK-------VKERILEYLAVQSRVKQL- 347
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
I+C ++GPPGVGKT+L + IAR
Sbjct: 348 --KGPILC----------LVGPPGVGKTSLGQSIAR 371
>gi|418290266|ref|ZP_12902434.1| DNA repair protein RadA [Neisseria meningitidis NM220]
gi|372201914|gb|EHP15787.1| DNA repair protein RadA [Neisseria meningitidis NM220]
Length = 488
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 109 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 162
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 163 ----LRAQRLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 205
>gi|193213633|ref|YP_001999586.1| AAA ATPase-2 domain-containing protein [Chlorobaculum parvum NCIB
8327]
gi|193087110|gb|ACF12386.1| ATPase AAA-2 domain protein [Chlorobaculum parvum NCIB 8327]
Length = 438
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 134 RKPLARFPSGDWVISEQIVKHEDLKHAISK-----VGDFSDDNRS---GIDRSLHRISAI 185
RK AR SGD ++ E+I +D+ +S+ V R GI+ LHR
Sbjct: 87 RKIEARQASGDLIMKEEI-DSDDIADIVSRWTGIPVSKMLQSERQKLLGIEAELHRRVVG 145
Query: 186 RNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDH 245
++ ++ + + RA G D GS + +GP GVGKT L R +A L DD
Sbjct: 146 QDEAVRAVSDAVKRSRAGMG------DEKRPIGSFIFLGPTGVGKTELARTLAEYLFDDE 199
>gi|379710259|ref|YP_005265464.1| hypothetical protein NOCYR_4070 [Nocardia cyriacigeorgica GUH-2]
gi|374847758|emb|CCF64830.1| protein of unknown function, putative Cell divisionFtsK/SpoIIIE
domain [Nocardia cyriacigeorgica GUH-2]
Length = 1440
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHM---KRVVIVDTSNEIGG 260
A + DL G++LV+G G GK+TL+R + LA H ++ ++++SN +G
Sbjct: 305 AAGETVWLDLAGPDGNLLVVGRAGAGKSTLLRTLTGSLALTHAPDEAQIYVLESSNRLGS 364
Query: 261 DGDVPH 266
G +PH
Sbjct: 365 MGALPH 370
>gi|357397538|ref|YP_004901729.1| putative conjugal transfer protein, ATPase TrbB [Methylomicrobium
alcaliphilum 20Z]
gi|351720059|emb|CCE25740.1| putative conjugal transfer protein, ATPase TrbB [Methylomicrobium
alcaliphilum 20Z]
Length = 320
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 184 AIRNRKMQVIGLTCRV--GRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA-RM 240
AIR + + + L V G G ++I + V +ILVIG G GKTTL+ I +M
Sbjct: 114 AIRKKAVAIFTLDQYVEGGIMTPGQRQVIIESVAAHRNILVIGGTGSGKTTLVNAIINQM 173
Query: 241 LADDHMKRVVIVDTSNEI 258
+A+D +RV I++ + EI
Sbjct: 174 VANDPTERVFIIEDTGEI 191
>gi|416172708|ref|ZP_11608785.1| DNA repair protein RadA [Neisseria meningitidis OX99.30304]
gi|325129905|gb|EGC52706.1| DNA repair protein RadA [Neisseria meningitidis OX99.30304]
Length = 459
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 176
>gi|385324464|ref|YP_005878903.1| DNA repair protein RadA (DNA repair protein Sms) [Neisseria
meningitidis 8013]
gi|261392851|emb|CAX50432.1| DNA repair protein RadA (DNA repair protein Sms) [Neisseria
meningitidis 8013]
Length = 459
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 176
>gi|254672846|emb|CBA07050.1| DNA repair protein [Neisseria meningitidis alpha275]
Length = 459
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 176
>gi|218767901|ref|YP_002342413.1| DNA repair protein RadA [Neisseria meningitidis Z2491]
gi|433479367|ref|ZP_20436661.1| DNA repair protein RadA [Neisseria meningitidis 63041]
gi|433513141|ref|ZP_20469935.1| DNA repair protein RadA [Neisseria meningitidis 63049]
gi|433519508|ref|ZP_20476229.1| DNA repair protein RadA [Neisseria meningitidis 65014]
gi|433540641|ref|ZP_20497096.1| DNA repair protein RadA [Neisseria meningitidis 63006]
gi|121051909|emb|CAM08215.1| putative DNA repair protein [Neisseria meningitidis Z2491]
gi|432217170|gb|ELK73039.1| DNA repair protein RadA [Neisseria meningitidis 63041]
gi|432248818|gb|ELL04242.1| DNA repair protein RadA [Neisseria meningitidis 63049]
gi|432255499|gb|ELL10828.1| DNA repair protein RadA [Neisseria meningitidis 65014]
gi|432277656|gb|ELL32702.1| DNA repair protein RadA [Neisseria meningitidis 63006]
Length = 459
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 176
>gi|433603787|ref|YP_007036156.1| hypothetical protein BN6_19640 [Saccharothrix espanaensis DSM
44229]
gi|407881640|emb|CCH29283.1| hypothetical protein BN6_19640 [Saccharothrix espanaensis DSM
44229]
Length = 1462
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 20/131 (15%)
Query: 205 GSAEIICDLVEGGGSILV-IGPPGVGKTTLIREIARMLADDHMKRVVIVDTS-------N 256
G +++C V G ++ V IGPPG GK+T +R +A + + + + ++ +
Sbjct: 573 GQRDLVCSFVSSGRALTVAIGPPGTGKSTAMRAVAEVWKTTGGRVIGLAPSAAAASVLGD 632
Query: 257 EIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI 316
+G D HS + A R P V+++ M+ E M T+++D I ALA
Sbjct: 633 MLGIPADTIHSLVT-AHRHHHP-VDIRQGDMLLVDEAGMAGTLMLDHI----RALA---- 682
Query: 317 AQRG--VQLVG 325
AQRG ++LVG
Sbjct: 683 AQRGAVIRLVG 693
>gi|421557006|ref|ZP_16002915.1| DNA repair protein RadA [Neisseria meningitidis 80179]
gi|402335691|gb|EJU70955.1| DNA repair protein RadA [Neisseria meningitidis 80179]
Length = 459
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTDGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 176
>gi|416162896|ref|ZP_11606865.1| DNA repair protein RadA [Neisseria meningitidis N1568]
gi|418288002|ref|ZP_12900526.1| DNA repair protein RadA [Neisseria meningitidis NM233]
gi|433473185|ref|ZP_20430549.1| DNA repair protein RadA [Neisseria meningitidis 97021]
gi|433481734|ref|ZP_20438999.1| DNA repair protein RadA [Neisseria meningitidis 2006087]
gi|433483720|ref|ZP_20440948.1| DNA repair protein RadA [Neisseria meningitidis 2002038]
gi|433485919|ref|ZP_20443120.1| DNA repair protein RadA [Neisseria meningitidis 97014]
gi|325127888|gb|EGC50792.1| DNA repair protein RadA [Neisseria meningitidis N1568]
gi|372202759|gb|EHP16531.1| DNA repair protein RadA [Neisseria meningitidis NM233]
gi|432210786|gb|ELK66742.1| DNA repair protein RadA [Neisseria meningitidis 97021]
gi|432217565|gb|ELK73433.1| DNA repair protein RadA [Neisseria meningitidis 2006087]
gi|432221423|gb|ELK77233.1| DNA repair protein RadA [Neisseria meningitidis 2002038]
gi|432222965|gb|ELK78747.1| DNA repair protein RadA [Neisseria meningitidis 97014]
Length = 459
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 176
>gi|416197392|ref|ZP_11618602.1| DNA repair protein RadA [Neisseria meningitidis CU385]
gi|427828502|ref|ZP_18995518.1| DNA repair protein RadA [Neisseria meningitidis H44/76]
gi|316983771|gb|EFV62752.1| DNA repair protein RadA [Neisseria meningitidis H44/76]
gi|325140064|gb|EGC62593.1| DNA repair protein RadA [Neisseria meningitidis CU385]
Length = 473
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 94 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 147
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 148 ----LRAQRLELPTDGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 190
>gi|385328116|ref|YP_005882419.1| putative DNA repair protein [Neisseria meningitidis alpha710]
gi|385342216|ref|YP_005896087.1| DNA repair protein RadA [Neisseria meningitidis M01-240149]
gi|385856937|ref|YP_005903449.1| DNA repair protein RadA [Neisseria meningitidis NZ-05/33]
gi|416188212|ref|ZP_11614681.1| DNA repair protein RadA [Neisseria meningitidis M0579]
gi|308388968|gb|ADO31288.1| putative DNA repair protein [Neisseria meningitidis alpha710]
gi|325135995|gb|EGC58605.1| DNA repair protein RadA [Neisseria meningitidis M0579]
gi|325202422|gb|ADY97876.1| DNA repair protein RadA [Neisseria meningitidis M01-240149]
gi|325207826|gb|ADZ03278.1| DNA repair protein RadA [Neisseria meningitidis NZ-05/33]
Length = 459
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 176
>gi|421539961|ref|ZP_15986114.1| DNA repair protein RadA [Neisseria meningitidis 93004]
gi|402320245|gb|EJU55736.1| DNA repair protein RadA [Neisseria meningitidis 93004]
Length = 459
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 176
>gi|385337734|ref|YP_005891607.1| DNA repair protein RadA (DNA repair protein Sms) [Neisseria
meningitidis WUE 2594]
gi|433475392|ref|ZP_20432733.1| DNA repair protein RadA [Neisseria meningitidis 88050]
gi|433515252|ref|ZP_20472024.1| DNA repair protein RadA [Neisseria meningitidis 2004090]
gi|433517288|ref|ZP_20474037.1| DNA repair protein RadA [Neisseria meningitidis 96023]
gi|433523748|ref|ZP_20480413.1| DNA repair protein RadA [Neisseria meningitidis 97020]
gi|433527897|ref|ZP_20484508.1| DNA repair protein RadA [Neisseria meningitidis NM3652]
gi|433530071|ref|ZP_20486664.1| DNA repair protein RadA [Neisseria meningitidis NM3642]
gi|433532329|ref|ZP_20488895.1| DNA repair protein RadA [Neisseria meningitidis 2007056]
gi|433534079|ref|ZP_20490624.1| DNA repair protein RadA [Neisseria meningitidis 2001212]
gi|319410148|emb|CBY90484.1| DNA repair protein RadA (DNA repair protein Sms) [Neisseria
meningitidis WUE 2594]
gi|432211210|gb|ELK67165.1| DNA repair protein RadA [Neisseria meningitidis 88050]
gi|432253840|gb|ELL09176.1| DNA repair protein RadA [Neisseria meningitidis 2004090]
gi|432254297|gb|ELL09632.1| DNA repair protein RadA [Neisseria meningitidis 96023]
gi|432260647|gb|ELL15905.1| DNA repair protein RadA [Neisseria meningitidis 97020]
gi|432266204|gb|ELL21392.1| DNA repair protein RadA [Neisseria meningitidis NM3652]
gi|432267999|gb|ELL23171.1| DNA repair protein RadA [Neisseria meningitidis NM3642]
gi|432268274|gb|ELL23445.1| DNA repair protein RadA [Neisseria meningitidis 2007056]
gi|432272589|gb|ELL27696.1| DNA repair protein RadA [Neisseria meningitidis 2001212]
Length = 459
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 176
>gi|385851553|ref|YP_005898068.1| DNA repair protein RadA [Neisseria meningitidis M04-240196]
gi|325206376|gb|ADZ01829.1| DNA repair protein RadA [Neisseria meningitidis M04-240196]
Length = 473
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 94 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 147
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 148 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 190
>gi|421537734|ref|ZP_15983917.1| DNA repair protein RadA [Neisseria meningitidis 93003]
gi|402318401|gb|EJU53924.1| DNA repair protein RadA [Neisseria meningitidis 93003]
Length = 459
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 176
>gi|416183822|ref|ZP_11612728.1| DNA repair protein RadA [Neisseria meningitidis M13399]
gi|325133704|gb|EGC56360.1| DNA repair protein RadA [Neisseria meningitidis M13399]
gi|389606131|emb|CCA45044.1| DNA repair protein radA homolog DNA repair protein sms homolog
[Neisseria meningitidis alpha522]
Length = 459
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 176
>gi|294669330|ref|ZP_06734409.1| DNA repair protein RadA [Neisseria elongata subsp. glycolytica ATCC
29315]
gi|291308740|gb|EFE49983.1| DNA repair protein RadA [Neisseria elongata subsp. glycolytica ATCC
29315]
Length = 461
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 176
>gi|421560958|ref|ZP_16006811.1| DNA repair protein RadA [Neisseria meningitidis NM2657]
gi|254669886|emb|CBA04378.1| DNA repair protein [Neisseria meningitidis alpha153]
gi|402339438|gb|EJU74654.1| DNA repair protein RadA [Neisseria meningitidis NM2657]
Length = 459
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTDGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 176
>gi|261363743|ref|ZP_05976626.1| DNA repair protein RadA [Neisseria mucosa ATCC 25996]
gi|288568316|gb|EFC89876.1| DNA repair protein RadA [Neisseria mucosa ATCC 25996]
Length = 459
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 176
>gi|152992191|ref|YP_001357912.1| DNA repair protein RadA [Sulfurovum sp. NBC37-1]
gi|151424052|dbj|BAF71555.1| DNA repair protein RadA/Sms [Sulfurovum sp. NBC37-1]
Length = 450
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 21/119 (17%)
Query: 199 VGRAVAGSAEIICDLVEGGGSI-----LVIGPPGVGKTTLIREIARMLADDHMKRVVIVD 253
+ R +GS E+ DLV GGG + L+ G PG+GK+TL+ +IA LA K V+
Sbjct: 71 ITRFPSGSCEL--DLVLGGGVVPGSLTLIGGSPGIGKSTLLLKIAGNLAQQRKK--VLYV 126
Query: 254 TSNEIGGDGDVPHSGIGRARRMQVPNVNM------QHSVMIEAVENHMPETIIIDEIGT 306
+ E G + RA R+ + N+ S ++ + N E I+ID I T
Sbjct: 127 SGEESAGQIKL------RANRLDANHENLFLLPEISLSTVLSEISNENYEFIVIDSIQT 179
>gi|349609900|ref|ZP_08889267.1| DNA repair protein RadA [Neisseria sp. GT4A_CT1]
gi|348611037|gb|EGY60711.1| DNA repair protein RadA [Neisseria sp. GT4A_CT1]
Length = 459
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 176
>gi|21242679|ref|NP_642261.1| flagellar biosynthesis regulator FlhF [Xanthomonas axonopodis pv.
citri str. 306]
gi|21108150|gb|AAM36797.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 566
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-VVIVDTSNEIGGDGDVPHSGI 269
D +E GG I ++GP G GKTT I ++A+ A H R V +V T + G + HS
Sbjct: 351 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHS-Y 409
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE--IGTELEALAASTIAQRGVQLV--- 324
GR + V + S++ + ++ID +G ALAA R Q V
Sbjct: 410 GRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAAQQVTSL 469
Query: 325 ----GTAHGMTIDNIVK 337
AH +D +V+
Sbjct: 470 LVLPANAHFSDLDEVVR 486
>gi|15676680|ref|NP_273824.1| DNA repair protein RadA [Neisseria meningitidis MC58]
gi|385853528|ref|YP_005900042.1| DNA repair protein RadA [Neisseria meningitidis H44/76]
gi|421544156|ref|ZP_15990234.1| DNA repair protein RadA [Neisseria meningitidis NM140]
gi|421546266|ref|ZP_15992315.1| DNA repair protein RadA [Neisseria meningitidis NM183]
gi|421548535|ref|ZP_15994560.1| DNA repair protein RadA [Neisseria meningitidis NM2781]
gi|421550335|ref|ZP_15996340.1| DNA repair protein RadA [Neisseria meningitidis 69166]
gi|421552560|ref|ZP_15998534.1| DNA repair protein RadA [Neisseria meningitidis NM576]
gi|421554545|ref|ZP_16000486.1| DNA repair protein RadA [Neisseria meningitidis 98008]
gi|421567228|ref|ZP_16012964.1| DNA repair protein RadA [Neisseria meningitidis NM3001]
gi|433464765|ref|ZP_20422250.1| DNA repair protein RadA [Neisseria meningitidis NM422]
gi|433471088|ref|ZP_20428479.1| DNA repair protein RadA [Neisseria meningitidis 68094]
gi|433477270|ref|ZP_20434593.1| DNA repair protein RadA [Neisseria meningitidis 70012]
gi|433488016|ref|ZP_20445184.1| DNA repair protein RadA [Neisseria meningitidis M13255]
gi|433490134|ref|ZP_20447263.1| DNA repair protein RadA [Neisseria meningitidis NM418]
gi|433504792|ref|ZP_20461732.1| DNA repair protein RadA [Neisseria meningitidis 9506]
gi|433506804|ref|ZP_20463716.1| DNA repair protein RadA [Neisseria meningitidis 9757]
gi|433508916|ref|ZP_20465789.1| DNA repair protein RadA [Neisseria meningitidis 12888]
gi|433511049|ref|ZP_20467881.1| DNA repair protein RadA [Neisseria meningitidis 4119]
gi|433521609|ref|ZP_20478304.1| DNA repair protein RadA [Neisseria meningitidis 61103]
gi|433525714|ref|ZP_20482348.1| DNA repair protein RadA [Neisseria meningitidis 69096]
gi|433536470|ref|ZP_20492978.1| DNA repair protein RadA [Neisseria meningitidis 77221]
gi|433538662|ref|ZP_20495142.1| DNA repair protein RadA [Neisseria meningitidis 70030]
gi|7226014|gb|AAF41195.1| DNA repair protein RadA [Neisseria meningitidis MC58]
gi|325200532|gb|ADY95987.1| DNA repair protein RadA [Neisseria meningitidis H44/76]
gi|402324001|gb|EJU59439.1| DNA repair protein RadA [Neisseria meningitidis NM183]
gi|402324268|gb|EJU59704.1| DNA repair protein RadA [Neisseria meningitidis NM140]
gi|402326196|gb|EJU61601.1| DNA repair protein RadA [Neisseria meningitidis NM2781]
gi|402330550|gb|EJU65897.1| DNA repair protein RadA [Neisseria meningitidis 69166]
gi|402331192|gb|EJU66533.1| DNA repair protein RadA [Neisseria meningitidis NM576]
gi|402332505|gb|EJU67830.1| DNA repair protein RadA [Neisseria meningitidis 98008]
gi|402344239|gb|EJU79380.1| DNA repair protein RadA [Neisseria meningitidis NM3001]
gi|432204252|gb|ELK60297.1| DNA repair protein RadA [Neisseria meningitidis NM422]
gi|432209577|gb|ELK65544.1| DNA repair protein RadA [Neisseria meningitidis 68094]
gi|432216492|gb|ELK72373.1| DNA repair protein RadA [Neisseria meningitidis 70012]
gi|432224482|gb|ELK80247.1| DNA repair protein RadA [Neisseria meningitidis M13255]
gi|432228042|gb|ELK83743.1| DNA repair protein RadA [Neisseria meningitidis NM418]
gi|432242307|gb|ELK97831.1| DNA repair protein RadA [Neisseria meningitidis 9506]
gi|432242593|gb|ELK98111.1| DNA repair protein RadA [Neisseria meningitidis 9757]
gi|432247730|gb|ELL03165.1| DNA repair protein RadA [Neisseria meningitidis 12888]
gi|432248540|gb|ELL03965.1| DNA repair protein RadA [Neisseria meningitidis 4119]
gi|432260382|gb|ELL15641.1| DNA repair protein RadA [Neisseria meningitidis 61103]
gi|432261905|gb|ELL17150.1| DNA repair protein RadA [Neisseria meningitidis 69096]
gi|432274420|gb|ELL29508.1| DNA repair protein RadA [Neisseria meningitidis 77221]
gi|432274670|gb|ELL29757.1| DNA repair protein RadA [Neisseria meningitidis 70030]
Length = 459
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTDGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 176
>gi|269214008|ref|ZP_06158298.1| DNA repair protein RadA [Neisseria cinerea ATCC 14685]
gi|269144791|gb|EEZ71209.1| DNA repair protein RadA [Neisseria cinerea ATCC 14685]
Length = 464
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 85 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 138
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 139 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 181
>gi|121634576|ref|YP_974821.1| DNA repair protein RadA [Neisseria meningitidis FAM18]
gi|120866282|emb|CAM10023.1| putative DNA repair protein [Neisseria meningitidis FAM18]
Length = 464
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 85 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 138
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 139 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 181
>gi|408373743|ref|ZP_11171437.1| ATP-dependent protease La [Alcanivorax hongdengensis A-11-3]
gi|407766447|gb|EKF74890.1| ATP-dependent protease La [Alcanivorax hongdengensis A-11-3]
Length = 780
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+ S K ++H ++ D D + G++ +++R ++ + + RVG+
Sbjct: 272 DWMTSVPWKKRSRIRHDLAYARDVLDQDHYGLEE-------VKDRILEFLAVQSRVGKV- 323
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
++C ++GPPGVGKT+L + IA+
Sbjct: 324 --KGPVLC----------LVGPPGVGKTSLGQSIAK 347
>gi|421542190|ref|ZP_15988300.1| DNA repair protein RadA [Neisseria meningitidis NM255]
gi|402318126|gb|EJU53651.1| DNA repair protein RadA [Neisseria meningitidis NM255]
Length = 459
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTDGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 176
>gi|419795899|ref|ZP_14321479.1| DNA repair protein RadA [Neisseria sicca VK64]
gi|385700112|gb|EIG30369.1| DNA repair protein RadA [Neisseria sicca VK64]
Length = 476
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 97 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 150
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 151 ----LRAQRLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 193
>gi|418029142|ref|ZP_12667690.1| hypothetical protein LDBUL1632_00484 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|354690860|gb|EHE90802.1| hypothetical protein LDBUL1632_00484 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 323
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 30/182 (16%)
Query: 210 ICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGI 269
+ DL G I+ GP G GKTT + E+AR L+ M V+ ++ E+ +
Sbjct: 124 LVDLCWLRGMIVTSGPTGSGKTTTMYELARKLSQTKM--VMTIEDPVEVYEESFF----- 176
Query: 270 GRARRMQV-PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAH 328
+ QV + ++ +++A H P+ +II EI E A A A G ++ T H
Sbjct: 177 ----QAQVNTGARISYASLLKAALRHRPDVLIIGEIRDEETAHLAVDAALSGHLVLATVH 232
Query: 329 GM-TIDNIVKNPSLQI----LVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMI 383
T I + SL + LV + +V+ Q+ + +KGP C +++
Sbjct: 233 AKSTYQTISRLESLGVKNNELVNCLTAVS----------YQRLLPGKKGP---ACLLDLA 279
Query: 384 SR 385
SR
Sbjct: 280 SR 281
>gi|78047535|ref|YP_363710.1| flagellar biosynthesis regulator FlhF [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78035965|emb|CAJ23656.1| flagellar GTP-binding protein FlhF [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 566
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-VVIVDTSNEIGGDGDVPHSGI 269
D +E GG I ++GP G GKTT I ++A+ A H R V +V T + G + HS
Sbjct: 351 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHS-Y 409
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE--IGTELEALAASTIAQRGVQLV--- 324
GR + V + S++ + ++ID +G ALAA R Q V
Sbjct: 410 GRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAAQQVTSL 469
Query: 325 ----GTAHGMTIDNIVK 337
AH +D +V+
Sbjct: 470 LVLPANAHFSDLDEVVR 486
>gi|421563008|ref|ZP_16008830.1| DNA repair protein RadA [Neisseria meningitidis NM2795]
gi|421906578|ref|ZP_16336471.1| radA-liek DNA repair protein [Neisseria meningitidis alpha704]
gi|433492284|ref|ZP_20449378.1| DNA repair protein RadA [Neisseria meningitidis NM586]
gi|433494361|ref|ZP_20451431.1| DNA repair protein RadA [Neisseria meningitidis NM762]
gi|433496545|ref|ZP_20453586.1| DNA repair protein RadA [Neisseria meningitidis M7089]
gi|433498605|ref|ZP_20455614.1| DNA repair protein RadA [Neisseria meningitidis M7124]
gi|433500573|ref|ZP_20457559.1| DNA repair protein RadA [Neisseria meningitidis NM174]
gi|433502844|ref|ZP_20459809.1| DNA repair protein RadA [Neisseria meningitidis NM126]
gi|393292326|emb|CCI72411.1| radA-liek DNA repair protein [Neisseria meningitidis alpha704]
gi|402341715|gb|EJU76888.1| DNA repair protein RadA [Neisseria meningitidis NM2795]
gi|432229073|gb|ELK84766.1| DNA repair protein RadA [Neisseria meningitidis NM586]
gi|432231035|gb|ELK86705.1| DNA repair protein RadA [Neisseria meningitidis NM762]
gi|432234439|gb|ELK90059.1| DNA repair protein RadA [Neisseria meningitidis M7124]
gi|432235245|gb|ELK90861.1| DNA repair protein RadA [Neisseria meningitidis M7089]
gi|432235864|gb|ELK91473.1| DNA repair protein RadA [Neisseria meningitidis NM174]
gi|432240940|gb|ELK96471.1| DNA repair protein RadA [Neisseria meningitidis NM126]
Length = 459
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 176
>gi|346724858|ref|YP_004851527.1| flagellar biosynthesis regulator FlhF [Xanthomonas axonopodis pv.
citrumelo F1]
gi|346649605|gb|AEO42229.1| flagellar biosynthesis regulator FlhF [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 566
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-VVIVDTSNEIGGDGDVPHSGI 269
D +E GG I ++GP G GKTT I ++A+ A H R V +V T + G + HS
Sbjct: 351 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHS-Y 409
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE--IGTELEALAASTIAQRGVQLV--- 324
GR + V + S++ + ++ID +G ALAA R Q V
Sbjct: 410 GRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAAQQVTSL 469
Query: 325 ----GTAHGMTIDNIVK 337
AH +D +V+
Sbjct: 470 LVLPANAHFSDLDEVVR 486
>gi|416178641|ref|ZP_11610669.1| DNA repair protein RadA [Neisseria meningitidis M6190]
gi|421558593|ref|ZP_16004471.1| DNA repair protein RadA [Neisseria meningitidis 92045]
gi|325131984|gb|EGC54683.1| DNA repair protein RadA [Neisseria meningitidis M6190]
gi|402337336|gb|EJU72584.1| DNA repair protein RadA [Neisseria meningitidis 92045]
Length = 459
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 176
>gi|385339757|ref|YP_005893629.1| DNA repair protein RadA [Neisseria meningitidis G2136]
gi|416205663|ref|ZP_11620611.1| DNA repair protein RadA [Neisseria meningitidis 961-5945]
gi|433466932|ref|ZP_20424389.1| DNA repair protein RadA [Neisseria meningitidis 87255]
gi|433468939|ref|ZP_20426368.1| DNA repair protein RadA [Neisseria meningitidis 98080]
gi|325142013|gb|EGC64445.1| DNA repair protein RadA [Neisseria meningitidis 961-5945]
gi|325198001|gb|ADY93457.1| DNA repair protein RadA [Neisseria meningitidis G2136]
gi|432203508|gb|ELK59559.1| DNA repair protein RadA [Neisseria meningitidis 87255]
gi|432205332|gb|ELK61362.1| DNA repair protein RadA [Neisseria meningitidis 98080]
Length = 459
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 176
>gi|421565117|ref|ZP_16010903.1| DNA repair protein RadA [Neisseria meningitidis NM3081]
gi|402345446|gb|EJU80563.1| DNA repair protein RadA [Neisseria meningitidis NM3081]
Length = 459
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 176
>gi|298368762|ref|ZP_06980080.1| DNA repair protein RadA [Neisseria sp. oral taxon 014 str. F0314]
gi|298282765|gb|EFI24252.1| DNA repair protein RadA [Neisseria sp. oral taxon 014 str. F0314]
Length = 459
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 17/105 (16%)
Query: 209 IICDLVEGGGSILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHS 267
++ D + G IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 82 VLGDGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA-------- 133
Query: 268 GIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 --LRAQRLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 176
>gi|255065204|ref|ZP_05317059.1| DNA repair protein RadA [Neisseria sicca ATCC 29256]
gi|255050625|gb|EET46089.1| DNA repair protein RadA [Neisseria sicca ATCC 29256]
Length = 459
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 176
>gi|237756460|ref|ZP_04584996.1| DNA repair protein RadA [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691374|gb|EEP60446.1| DNA repair protein RadA [Sulfurihydrogenibium yellowstonense SS-5]
Length = 285
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
G +LV G PGVGK+TL+ +I+ A+D K+V+ + + + RA R+
Sbjct: 88 GQVVLVSGEPGVGKSTLLLQISSYFAND--KKVLYISAE-------ESQYQIYIRAERLN 138
Query: 277 VPNVNM------QHSVMIEAVENHMPETIIIDEIGT 306
N+ +++A+EN P+ I++D + T
Sbjct: 139 ALKENLYILSETNLEAILQAIENIKPDLIVLDSVQT 174
>gi|161869728|ref|YP_001598895.1| DNA repair protein RadA [Neisseria meningitidis 053442]
gi|161595281|gb|ABX72941.1| DNA repair protein [Neisseria meningitidis 053442]
Length = 459
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 176
>gi|390991840|ref|ZP_10262094.1| flagellar biosynthetic protein FlhF [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|372553441|emb|CCF69069.1| flagellar biosynthetic protein FlhF [Xanthomonas axonopodis pv.
punicae str. LMG 859]
Length = 566
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-VVIVDTSNEIGGDGDVPHSGI 269
D +E GG I ++GP G GKTT I ++A+ A H R V +V T + G + HS
Sbjct: 351 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHS-Y 409
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE--IGTELEALAASTIAQRGVQLV--- 324
GR + V + S++ + ++ID +G ALAA R Q V
Sbjct: 410 GRQLGIAVHEADSAESLLELLDRLRDYKLVLIDTAGMGQRDRALAAQLNWLRAAQQVTSL 469
Query: 325 ----GTAHGMTIDNIVK 337
AH +D +V+
Sbjct: 470 LVLPANAHFSDLDEVVR 486
>gi|241759837|ref|ZP_04757937.1| DNA repair protein RadA [Neisseria flavescens SK114]
gi|241319845|gb|EER56241.1| DNA repair protein RadA [Neisseria flavescens SK114]
Length = 475
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 97 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 150
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 151 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 193
>gi|269215101|ref|ZP_06159039.1| DNA repair protein RadA [Neisseria lactamica ATCC 23970]
gi|269208321|gb|EEZ74776.1| DNA repair protein RadA [Neisseria lactamica ATCC 23970]
Length = 464
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 85 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 138
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 139 ----LRAQRLELPTDGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 181
>gi|58616433|ref|YP_195562.1| mating pair formation protein TrbB [Aromatoleum aromaticum EbN1]
gi|56315895|emb|CAI10538.1| mating pair formation protein TrbB [Aromatoleum aromaticum EbN1]
Length = 319
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 182 ISAIRNRKMQVIGLTCRV--GRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIRE-IA 238
I AIR + + + L V G AG +++ + V ++LVIG G GKTTL+ I
Sbjct: 111 IFAIRKKAVAIFTLDQYVESGVMTAGQRDVLIEAVRAHRNVLVIGGTGSGKTTLVNALIN 170
Query: 239 RMLADDHMKRVVIVDTSNEI 258
+M+ +D +RV I++ + EI
Sbjct: 171 QMVINDPTERVFIIEDTGEI 190
>gi|340362418|ref|ZP_08684803.1| DNA repair protein RadA [Neisseria macacae ATCC 33926]
gi|339887426|gb|EGQ76982.1| DNA repair protein RadA [Neisseria macacae ATCC 33926]
Length = 459
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 176
>gi|319638579|ref|ZP_07993341.1| DNA repair protein radA [Neisseria mucosa C102]
gi|317400328|gb|EFV80987.1| DNA repair protein radA [Neisseria mucosa C102]
Length = 458
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 176
>gi|421074477|ref|ZP_15535509.1| stage III sporulation protein AA [Pelosinus fermentans JBW45]
gi|392527518|gb|EIW50612.1| stage III sporulation protein AA [Pelosinus fermentans JBW45]
Length = 333
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 194 GLTCRVGRAVAGSA-EIICDLVEGGGSIL---VIGPPGVGKTTLIREIARMLA-DDHMKR 248
GL R+ R V G A +II ++ G +L +I PP GKTT++R++ R ++ ++ +
Sbjct: 136 GLNIRLAREVKGCADQIIPYIITKEGQVLNTLIISPPRCGKTTILRDLIRQISMGSNIYK 195
Query: 249 ---VVIVDTSNEIGGDGDVPHSGIGRAR---RMQVPNVNMQHSVMIEAVENHMPETIIID 302
V +VD +EI SGI R V + + M+ + + P + D
Sbjct: 196 GLPVGVVDERSEIAA----CKSGISTVDLGIRTDVLDNCPKAMGMLMLIRSMSPAVVATD 251
Query: 303 EIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
E+G + A GV +V T HG + ++ P
Sbjct: 252 ELGRAEDIHAVREALNAGVSVVTTVHGKDLSELLHRP 288
>gi|416192648|ref|ZP_11616754.1| DNA repair protein RadA [Neisseria meningitidis ES14902]
gi|325137815|gb|EGC60390.1| DNA repair protein RadA [Neisseria meningitidis ES14902]
Length = 459
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 176
>gi|304387909|ref|ZP_07370082.1| DNA repair protein RadA [Neisseria meningitidis ATCC 13091]
gi|304338006|gb|EFM04143.1| DNA repair protein RadA [Neisseria meningitidis ATCC 13091]
Length = 464
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 85 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 138
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 139 ----LRAQRLELPTDGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 181
>gi|70607714|ref|YP_256584.1| hypothetical protein Saci_1989 [Sulfolobus acidocaldarius DSM 639]
gi|449067994|ref|YP_007435076.1| hypothetical protein SacN8_09855 [Sulfolobus acidocaldarius N8]
gi|449070267|ref|YP_007437348.1| hypothetical protein SacRon12I_09875 [Sulfolobus acidocaldarius
Ron12/I]
gi|68568362|gb|AAY81291.1| conserved protein [Sulfolobus acidocaldarius DSM 639]
gi|449036502|gb|AGE71928.1| hypothetical protein SacN8_09855 [Sulfolobus acidocaldarius N8]
gi|449038775|gb|AGE74200.1| hypothetical protein SacRon12I_09875 [Sulfolobus acidocaldarius
Ron12/I]
Length = 582
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHM 246
G+IL++GPPGVGKT + + IA L DD++
Sbjct: 299 NGNILLVGPPGVGKTQIAKIIAESLCDDYL 328
>gi|398348057|ref|ZP_10532760.1| DNA repair protein RadA [Leptospira broomii str. 5399]
Length = 456
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 79/173 (45%), Gaps = 47/173 (27%)
Query: 201 RAVAGSAEIICDLVEGGGSI-----LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R + G +E+ DLV GGG + L+ G PGVGK+TLI EI+R L++ K + I
Sbjct: 72 RILTGLSEL--DLVLGGGLVPGSLVLIGGEPGVGKSTLILEISRKLSEQGRKLLYI---- 125
Query: 256 NEIGGDGDVPHSGIG-RARRMQVPNVNMQH---------SVMIEAVENHMPETIIIDEIG 305
G+ S +G RA RM V + N+ S MIE E P+ + +D I
Sbjct: 126 -----SGEESASQVGLRAARMSVLSSNLLLSSETYAENVSAMIEDTE---PDLVFVDSIQ 177
Query: 306 T-ELEAL--AASTIAQ--------------RGVQLVGTAHGMTIDNIVKNPSL 341
T EAL A T+ Q G+ ++ T H +T D + P +
Sbjct: 178 TLTREALPNQAGTVTQLRECTQVLLETAKRTGIPIIMTGH-ITKDGTIAGPKI 229
>gi|358450534|ref|ZP_09160992.1| ATP-dependent protease La [Marinobacter manganoxydans MnI7-9]
gi|357225183|gb|EHJ03690.1| ATP-dependent protease La [Marinobacter manganoxydans MnI7-9]
Length = 805
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+++ K ++H I K + D + G+D ++ R ++ + + RV + V
Sbjct: 296 DWMLAIPWKKRSRVRHDIEKAREILDRDHYGLDE-------VKKRILEYLAVQSRV-KKV 347
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
G ++C ++GPPGVGKT+L + IAR
Sbjct: 348 KGP--VLC----------LVGPPGVGKTSLGQSIAR 371
>gi|323527724|ref|YP_004229877.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1001]
gi|323384726|gb|ADX56817.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1001]
Length = 731
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 20/177 (11%)
Query: 213 LVEGGGSILVIGPPGVGKTTLIREI-ARMLADDHMKRVVIVDT-SNEIGGDGDVPHSGIG 270
L+E GG ++GP GVGKTT ++ AR + +V ++ T S IGG + G
Sbjct: 495 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQL--RIFG 552
Query: 271 RARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG-TELEALAASTIA---------QRG 320
+ + V V + + E ++ID IG ++ + L + IA QR
Sbjct: 553 KILGVSVHAVKDSADLQLALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLSRAGQPVQRL 612
Query: 321 VQLVGTAHGMTIDNIV----KNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGP 373
+ L T+HG T++ +V + P Q L G I +T DE V T++ K P
Sbjct: 613 LLLNATSHGDTLNEVVQAYQRGPDQQPLAGCI--LTKLDEATNLGGVLDTVIRYKLP 667
>gi|336396013|ref|ZP_08577412.1| competence protein [Lactobacillus farciminis KCTC 3681]
Length = 322
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 181 RISAI---RNRKMQVIGLTCRVGRAVAGSAEIICDLV---EGGGSILVIGPPGVGKTTLI 234
R+SA+ +NR+ VI L S EI+ +L+ + G +L GP G GKT+L+
Sbjct: 90 RVSAVGDFKNRESMVIRLIYPQELVSPISEEIVENLLPIAKQKGMMLFAGPMGSGKTSLM 149
Query: 235 REIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV-PNVNMQHSVMIEAVEN 293
+ R L+ + KRV+ ++ EI D + ++QV M + +I+
Sbjct: 150 YALTRQLS--YKKRVMCIEDPIEIVEDSFL---------QLQVNEEAGMTYEELIKTTLR 198
Query: 294 HMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
H P +II EI A A A G ++ T HG + ++++
Sbjct: 199 HRPGILIIGEIRDAKTAQQAIRAAICGYTVMSTIHGKSKYSVIQ 242
>gi|311744980|ref|ZP_07718765.1| DNA repair protein RadA [Algoriphagus sp. PR1]
gi|126577487|gb|EAZ81707.1| DNA repair protein RadA [Algoriphagus sp. PR1]
Length = 457
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 32/135 (23%)
Query: 201 RAVAGSAEIICDLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R V G AE+ D V GGG +L+ G PG+GK+TL+ +IA L K V+ V
Sbjct: 74 RYVTGDAEL--DRVLGGGIVPGSLVLIGGEPGIGKSTLMLQIALTL---KAKSVLYV--- 125
Query: 256 NEIGGDGDVPHSGIG-RARRMQVPN--------VNMQHSVMIEAVENHMPETIIIDEIGT 306
G+ + I RA RMQ N N QH + + +E P ++ID I T
Sbjct: 126 -----SGEESEAQIKMRADRMQAKNPDCYVLSETNTQH--IFQQIEALKPNLLVIDSIQT 178
Query: 307 ---ELEALAASTIAQ 318
+L AA +++Q
Sbjct: 179 LHSQLVESAAGSVSQ 193
>gi|385331924|ref|YP_005885875.1| DNA-binding ATP-dependent protease La [Marinobacter adhaerens HP15]
gi|311695074|gb|ADP97947.1| DNA-binding ATP-dependent protease La [Marinobacter adhaerens HP15]
Length = 805
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+++ K ++H I K + D + G+D ++ R ++ + + RV + V
Sbjct: 296 DWMLAIPWKKRSRVRHDIEKAREILDRDHYGLDE-------VKKRILEYLAVQSRV-KKV 347
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
G ++C ++GPPGVGKT+L + IAR
Sbjct: 348 KGP--VLC----------LVGPPGVGKTSLGQSIAR 371
>gi|77407934|ref|ZP_00784685.1| competence protein CglA [Streptococcus agalactiae COH1]
gi|77173481|gb|EAO76599.1| competence protein CglA [Streptococcus agalactiae COH1]
Length = 199
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHS 267
E++C G L GP G GKTTL+ ++A + + K+++ ++ EI D
Sbjct: 3 EVLC----ARGLYLFSGPVGSGKTTLMYQLASEVFKN--KQIITIEDPVEIKND------ 50
Query: 268 GIGRARRMQV-PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
+ ++Q+ ++ M + +I+ H P+ +II EI + A A + GV + T
Sbjct: 51 ---KMLQLQLNEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFST 107
Query: 327 AHGMTI 332
H +I
Sbjct: 108 IHAKSI 113
>gi|429200083|ref|ZP_19191804.1| type VII secretion protein EccCa [Streptomyces ipomoeae 91-03]
gi|428664193|gb|EKX63495.1| type VII secretion protein EccCa [Streptomyces ipomoeae 91-03]
Length = 1360
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 210 ICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGD----GDVP 265
+ DL GG + VIG P GKTTL+R +A LA H V + + +GG +P
Sbjct: 841 VLDLTVAGGHVAVIGGPQSGKTTLLRTLALSLATTHTPAEVAIYGLDLVGGGLSALSGLP 900
Query: 266 HSG--IGRARR 274
H G GRA R
Sbjct: 901 HVGGIAGRADR 911
>gi|422111387|ref|ZP_16380995.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378189|emb|CBX23181.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 459
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTDGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 176
>gi|300721989|ref|YP_003711269.1| DNA-binding ATP-dependent protease La [Xenorhabdus nematophila ATCC
19061]
gi|297628486|emb|CBJ89053.1| DNA-binding ATP-dependent protease La; heat shock K-protein
[Xenorhabdus nematophila ATCC 19061]
Length = 784
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++ V +K + K + D + G++R ++ R ++ + + RV +
Sbjct: 296 DWMVQVPWVARSKVKKDLVKAQEVLDTDHYGLER-------VKERILEYLAVQSRVSKI- 347
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
I+C ++GPPGVGKT+L R IAR
Sbjct: 348 --KGPILC----------LVGPPGVGKTSLGRSIAR 371
>gi|399523962|ref|ZP_10764556.1| ATPase, AAA family, partial [Atopobium sp. ICM58]
gi|398374971|gb|EJN52462.1| ATPase, AAA family, partial [Atopobium sp. ICM58]
Length = 333
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 177 RSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEG---GGSILVIGPPGVGKTTL 233
RSL +A +N + ++ L +G+AV G I L+ GG L+ G PGV KT L
Sbjct: 12 RSLS--AAEKNTQGALLALKAEIGKAVVGQDGAITGLIVALVAGGHALLEGVPGVAKTLL 69
Query: 234 IREIARMLADDHMKRV 249
+R +AR L D M R+
Sbjct: 70 VRTLARAL-DVEMARI 84
>gi|126668933|ref|ZP_01739874.1| ATP-dependent protease La [Marinobacter sp. ELB17]
gi|126626596|gb|EAZ97252.1| ATP-dependent protease La [Marinobacter sp. ELB17]
Length = 805
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+++ K ++H I + + D++ G+D ++ R ++ + + RV + +
Sbjct: 296 DWMLAVPWKKRSRVRHDIDRAREILDEDHYGLDE-------VKTRTLEYLAVHTRV-KKI 347
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
G ++C ++GPPGVGKT+L + IAR
Sbjct: 348 KGP--VLC----------LVGPPGVGKTSLGQSIAR 371
>gi|392593614|gb|EIW82939.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 635
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 189 KMQVIGLTCRVG-RAVAGSAEIICDLVEGG--GSILVIGPPGVGKTTLIREIAR 239
K++ L+ VG R + GS ++ +L E G GS++ GPPG GKTTL R +AR
Sbjct: 131 KLRPRNLSDFVGQRHLTGSDSLLMNLAENGSLGSLIFWGPPGCGKTTLSRLLAR 184
>gi|225076233|ref|ZP_03719432.1| hypothetical protein NEIFLAOT_01270 [Neisseria flavescens
NRL30031/H210]
gi|224952357|gb|EEG33566.1| hypothetical protein NEIFLAOT_01270 [Neisseria flavescens
NRL30031/H210]
Length = 458
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 80 DRVLGGGLVDGAVILLGGNPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 133
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 134 ----LRAQRLELPTEGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 176
>gi|384419273|ref|YP_005628633.1| flagellar biosynthesis protein FlhF [Xanthomonas oryzae pv.
oryzicola BLS256]
gi|353462186|gb|AEQ96465.1| flagellar biosynthesis protein FlhF [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 557
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-VVIVDTSNEIGGDGDVPHSGI 269
D +E GG I ++GP G GKTT I ++A+ A H R V +V T + G + HS
Sbjct: 342 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHS-Y 400
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE--IGTELEALAASTIAQRGVQLV--- 324
GR + V + S++ + ++ID +G ALAA R Q V
Sbjct: 401 GRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAAQQVTSL 460
Query: 325 ----GTAHGMTIDNIVK 337
AH +D +V+
Sbjct: 461 LVLPANAHFSDLDEVVR 477
>gi|380511003|ref|ZP_09854410.1| flagellar biosynthesis regulator FlhF, partial [Xanthomonas
sacchari NCPPB 4393]
Length = 325
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIG 270
D +E GG I +IGP G GKTT I ++A + H R V + T++ I G G
Sbjct: 110 LDPLEEGGVIALIGPTGAGKTTTIAKLASRFLERHAARDVALVTTDTIRVGGREQLHSYG 169
Query: 271 RARRMQVPNVNMQHSV--MIEAVENHMPETIIIDEIG---------TELEALAASTIAQR 319
R + V + ++ ++E + ++ + ++ID G +L L AS + +
Sbjct: 170 RQLGIAVHEADSDAALQQLLERLADY--KLVLIDTAGMGQRDRALAAQLHWLRASRVVRS 227
Query: 320 GVQLVGTAHGMTIDNIVK 337
+ L AH +D +V+
Sbjct: 228 LLVLPANAHFSDLDEVVR 245
>gi|296840923|ref|ZP_06899435.1| DNA repair protein RadA [Neisseria polysaccharea ATCC 43768]
gi|296839587|gb|EFH23525.1| DNA repair protein RadA [Neisseria polysaccharea ATCC 43768]
Length = 464
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 85 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 138
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 139 ----LRAQRLELPTDGVNLLAEIRMEAIQAALKQHQPEVVVIDSIQT 181
>gi|88604155|ref|YP_504333.1| ATPase [Methanospirillum hungatei JF-1]
gi|88189617|gb|ABD42614.1| ATPase, PilT family [Methanospirillum hungatei JF-1]
Length = 655
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 29/122 (23%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
IL+ GPPG GKTTL + IA L D+ VI+ T + R M VP
Sbjct: 262 GILITGPPGCGKTTLAQAIATYLCDEG----VIIKTMEQ--------------PREMLVP 303
Query: 279 NVNMQHSVMIEAVENHM-------PETIIIDEI--GTELEALAASTIAQRGVQLVGTAHG 329
+ Q++ + ++ N P+ +I DE+ + E A +A G+ ++G H
Sbjct: 304 DQITQYTALDGSMANTADVLLLVRPDFVIFDELRRNEDFEVFADMRLA--GIGMIGIIHA 361
Query: 330 MT 331
++
Sbjct: 362 VS 363
>gi|268608458|ref|ZP_06142185.1| stage III sporulation protein AA [Ruminococcus flavefaciens FD-1]
Length = 330
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 12/152 (7%)
Query: 198 RVGRAVAGSAEIICDLVEG--GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R+ R V G E +L G S+++ G GKTT++R++ R+ + + ++D+
Sbjct: 128 RIARQVIGCGE---ELFSSTCGRSLIICGAVNSGKTTILRDLCRLYGN--AVKCTLIDSR 182
Query: 256 NEIGG--DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAA 313
NEI G P + +G + +H +I AV P I DEI + A
Sbjct: 183 NEIAAVIKGK-PANDVGML--TDIITGKSRHDGIISAVRTLSPGYIFCDEIADSSDTEAI 239
Query: 314 STIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345
GV+ + T H +++ +++ ++ L+
Sbjct: 240 REGIGCGVKFIATIHADSVEELLRRSVVRTLL 271
>gi|260902815|ref|ZP_05911210.1| ATP-dependent protease La 1 [Vibrio parahaemolyticus AQ4037]
gi|308108658|gb|EFO46198.1| ATP-dependent protease La 1 [Vibrio parahaemolyticus AQ4037]
Length = 413
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +K ++K + +++ G++R ++ R ++ + + R+ +
Sbjct: 295 DWMVSVPWTKRSKVKKNLAKAEEILNEDHYGLER-------VKERILEYLAVQNRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>gi|115372342|ref|ZP_01459651.1| chaperone ClpB [Stigmatella aurantiaca DW4/3-1]
gi|310819555|ref|YP_003951913.1| ClpA/B family protein [Stigmatella aurantiaca DW4/3-1]
gi|115370555|gb|EAU69481.1| chaperone ClpB [Stigmatella aurantiaca DW4/3-1]
gi|309392627|gb|ADO70086.1| ClpA/B family protein [Stigmatella aurantiaca DW4/3-1]
Length = 939
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 168 SDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPG 227
S+DN IDR L I+ R K+ A A AE++ L GG L+ G PG
Sbjct: 6 SEDNERLIDRDLTAIA--REGKLPP------AHGADAVVAEVLGLLTRGGKHPLLAGEPG 57
Query: 228 VGKTTLIREIARMLADDHM------KRVVIVDTSN 256
VGK+ LI+E+AR +A+ + R+V + T+N
Sbjct: 58 VGKSALIQEVARRIAEGRVDAELTQARLVEISTAN 92
>gi|398811059|ref|ZP_10569865.1| ABC-type spermidine/putrescine transport system, ATPase component
[Variovorax sp. CF313]
gi|398081432|gb|EJL72209.1| ABC-type spermidine/putrescine transport system, ATPase component
[Variovorax sp. CF313]
Length = 361
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 190 MQVIGLTCRVGRAVAGSAEIICD---LVEGGGSILVIGPPGVGKTTLIREIARMLADDHM 246
M+ + + CR R G+ E++ D L+E G ++GP G GK+TL+R IA + H
Sbjct: 1 MKKVSVECRNLRLAYGATEVLRDVNLLIEPGEFFALLGPSGSGKSTLLRLIAGF--NQHQ 58
Query: 247 KRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
++VD + G + G+ P++N+ +V VE + + I ++
Sbjct: 59 HGELLVDGKDVSGMPPWKRNIGMVFQSYALWPHLNVWDNVAFGLVERRVGRSEIKRKVAA 118
Query: 307 ELEALAASTIAQR 319
LE + A+R
Sbjct: 119 ALETVDLLRYAKR 131
>gi|347524900|ref|YP_004831648.1| DNA repair protein RadA [Lactobacillus ruminis ATCC 27782]
gi|345283859|gb|AEN77712.1| DNA repair protein RadA [Lactobacillus ruminis ATCC 27782]
Length = 457
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 13/113 (11%)
Query: 201 RAVAGSAEIICDLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIV--D 253
R V +AE+ + V GGG +L+ G PG+GK+T++ +++ LAD K + + +
Sbjct: 71 RIVTKNAEL--NRVLGGGIVPSSMVLIGGDPGIGKSTMLLQLSGELADMGGKVLYVSGEE 128
Query: 254 TSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
++N+I D G+G + P +MQ +++ VE+ P+ ++ID + T
Sbjct: 129 SANQIKMRAD--RLGVGGSEFYLYPETDMQS--ILQNVEDLKPDYVVIDSVQT 177
>gi|408410041|ref|ZP_11181299.1| DNA repair protein radA [Lactobacillus sp. 66c]
gi|407875792|emb|CCK83105.1| DNA repair protein radA [Lactobacillus sp. 66c]
Length = 458
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 55/93 (59%), Gaps = 9/93 (9%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIV---DTSNEIGGDGDVPHSGIGRAR 273
G +L+ G PG+GK+TL+ +I LA+ + +V+ V +++++I D G+G++
Sbjct: 93 GSLVLIGGDPGIGKSTLMLQIMSDLAEKY--KVLYVSGEESASQIKLRAD--RLGLGQSP 148
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
M P NM+H + + +++ P+ ++ID I T
Sbjct: 149 MMLYPESNMEH--IRDQIDDLKPDFVVIDSIQT 179
>gi|409349719|ref|ZP_11233089.1| DNA repair protein radA [Lactobacillus equicursoris CIP 110162]
gi|407877948|emb|CCK85147.1| DNA repair protein radA [Lactobacillus equicursoris CIP 110162]
Length = 458
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 55/93 (59%), Gaps = 9/93 (9%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIV---DTSNEIGGDGDVPHSGIGRAR 273
G +L+ G PG+GK+TL+ +I LA+ + +V+ V +++++I D G+G++
Sbjct: 93 GSLVLIGGDPGIGKSTLMLQIMSDLAEKY--KVLYVSGEESASQIKLRAD--RLGLGQSP 148
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
M P NM+H + + +++ P+ ++ID I T
Sbjct: 149 MMLYPESNMEH--IRDQIDDLKPDFVVIDSIQT 179
>gi|390566948|ref|ZP_10247300.1| flagellar biosynthesis regulator FlhF [Burkholderia terrae BS001]
gi|389941035|gb|EIN02812.1| flagellar biosynthesis regulator FlhF [Burkholderia terrae BS001]
Length = 613
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 20/177 (11%)
Query: 213 LVEGGGSILVIGPPGVGKTTLIREI-ARMLADDHMKRVVIVDT-SNEIGGDGDVPHSGIG 270
L+E GG ++GP GVGKTT ++ AR + +V ++ T S IGG + G
Sbjct: 377 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQL--RIFG 434
Query: 271 RARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG-TELEALAASTIA---------QRG 320
+ + V V + + E ++ID IG ++ + L + IA QR
Sbjct: 435 KILGVSVHAVKDSADLQLALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLCRAGQPVQRL 494
Query: 321 VQLVGTAHGMTIDNIVK----NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGP 373
+ L T+HG T++ +V+ P Q L G I +T DE V T++ K P
Sbjct: 495 LLLNATSHGDTLNEVVQAYQNAPDQQPLAGCI--LTKLDEATNLGSVLDTVIRYKLP 549
>gi|366086384|ref|ZP_09452869.1| type II secretory pathway/competence component,AtPase
[Lactobacillus zeae KCTC 3804]
Length = 289
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 209 IICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSG 268
++ L++ G + + GP G GKTTL+ ++A LA+ M V+ ++ EI +
Sbjct: 119 LMSVLLQRRGMLTLAGPTGSGKTTLLYQLATRLAESRM--VLSIEDPVEINQPQFL---- 172
Query: 269 IGRARRMQV-PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTA 327
++QV P M + +++A H P+ ++I EI A +A A G ++ T
Sbjct: 173 -----QLQVNPEAEMSYPQLLKAALRHRPDVLLIGEIRDRQTAQSACEAAISGHIVLATV 227
Query: 328 HG 329
H
Sbjct: 228 HA 229
>gi|323339416|ref|ZP_08079699.1| DNA repair protein RadA [Lactobacillus ruminis ATCC 25644]
gi|417972444|ref|ZP_12613346.1| DNA repair protein RadA [Lactobacillus ruminis ATCC 25644]
gi|323093181|gb|EFZ35770.1| DNA repair protein RadA [Lactobacillus ruminis ATCC 25644]
gi|346331205|gb|EGX99422.1| DNA repair protein RadA [Lactobacillus ruminis ATCC 25644]
Length = 457
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 13/113 (11%)
Query: 201 RAVAGSAEIICDLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIV--D 253
R V +AE+ + V GGG +L+ G PG+GK+T++ +++ LAD K + + +
Sbjct: 71 RIVTKNAEL--NRVLGGGIVPSSMVLIGGDPGIGKSTMLLQLSGELADMGGKVLYVSGEE 128
Query: 254 TSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
++N+I D G+G + P +MQ +++ VE+ P+ ++ID + T
Sbjct: 129 SANQIKMRAD--RLGVGGSEFYLYPETDMQS--ILQNVEDLKPDYVVIDSVQT 177
>gi|119503319|ref|ZP_01625403.1| Endopeptidase La [marine gamma proteobacterium HTCC2080]
gi|119460965|gb|EAW42056.1| Endopeptidase La [marine gamma proteobacterium HTCC2080]
Length = 803
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +KH + + D + G++ +++R ++ + + RV R +
Sbjct: 294 DWMVSVPWTKRSKVKHDLKRAASILDADHYGLEE-------VKDRILEYLAVQKRV-RKI 345
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
G ++C ++GPPGVGKT+L +AR
Sbjct: 346 KGP--VLC----------LVGPPGVGKTSLGESLAR 369
>gi|385815392|ref|YP_005851783.1| Competence protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|325125429|gb|ADY84759.1| Competence protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
Length = 323
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 28/181 (15%)
Query: 210 ICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGI 269
+ DL G I+ GP G GKTT + E+AR L+ M V+ ++ E+ +
Sbjct: 124 LVDLCWLRGMIVTSGPTGSGKTTTMYELARKLSQTKM--VMTIEDPVEVYEESFFQAQVN 181
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHG 329
AR + ++ +++A H P+ +II EI E A A A G ++ T H
Sbjct: 182 AGAR--------ISYASLLKAALRHRPDVLIIGEIRDEETAHLAVDAALSGHLVLATVHA 233
Query: 330 M-TIDNIVKNPSLQI----LVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMIS 384
T I + SL + LV + +V+ Q+ + KGP C +++ S
Sbjct: 234 KSTYQTISRLESLGVKNNELVNCLTAVS----------YQRLLPGEKGP---ACLLDLAS 280
Query: 385 R 385
R
Sbjct: 281 R 281
>gi|90021811|ref|YP_527638.1| flagellar biosynthetic protein FlhF [Saccharophagus degradans 2-40]
gi|89951411|gb|ABD81426.1| GTP-binding signal recognition particle SRP54, G-domain
[Saccharophagus degradans 2-40]
Length = 527
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 212 DLVEGGGSILVIGPPGVGKTTLIREI-ARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIG 270
D+V GGG +GP GVGKTT I ++ AR + ++ +V I+ T G D S +G
Sbjct: 312 DMVSGGGVFAFVGPTGVGKTTTIAKLAARFVLENGPGKVAIITTDTYRVGAHDQLRS-LG 370
Query: 271 RARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
R + V ++ HS+ + I++D G
Sbjct: 371 RILGVPVRALDKDHSLPVLLASLKQFPLILVDTAG 405
>gi|25010234|ref|NP_734629.1| hypothetical protein gbs0159 [Streptococcus agalactiae NEM316]
gi|77413407|ref|ZP_00789600.1| competence protein CglA [Streptococcus agalactiae 515]
gi|23094586|emb|CAD45804.1| Unknown [Streptococcus agalactiae NEM316]
gi|77160577|gb|EAO71695.1| competence protein CglA [Streptococcus agalactiae 515]
Length = 323
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
G L GP G GKTTL+ ++A + + K+++ ++ EI D + ++Q+
Sbjct: 133 GLYLFSGPVGSGKTTLMYQLASEVFKN--KQIITIEDPVEIKND---------KMLQLQL 181
Query: 278 -PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
++ M + +I+ H P+ +II EI + A A + GV + T H +I +
Sbjct: 182 NEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFSTIHAKSISGV 240
>gi|58584808|ref|YP_198381.1| ATP-dependent Lon protease [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|58419124|gb|AAW71139.1| ATP-dependent Lon protease [Wolbachia endosymbiont strain TRS of
Brugia malayi]
Length = 803
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 20/103 (19%)
Query: 145 WVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVA 204
W++ K++D K ++ D+N GI++ +++R ++ + + RV + +
Sbjct: 311 WLLDLPWGKYKDAKINLNAAKKILDENHYGIEK-------VKDRIIEFLAVLKRV-KEIK 362
Query: 205 GSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247
G I+C ++GPPGVGKT+L + +AR + D ++
Sbjct: 363 GP--ILC----------LVGPPGVGKTSLAKSMARAVGRDFVR 393
>gi|395786091|ref|ZP_10465819.1| lon protease [Bartonella tamiae Th239]
gi|423717015|ref|ZP_17691205.1| lon protease [Bartonella tamiae Th307]
gi|395424549|gb|EJF90736.1| lon protease [Bartonella tamiae Th239]
gi|395427804|gb|EJF93887.1| lon protease [Bartonella tamiae Th307]
Length = 807
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 20/104 (19%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+++ K +K+ + DD+ G+D+ ++ R ++ + + R +
Sbjct: 301 DWLLTIPWGKKSKIKNDLHYAETVMDDDHFGLDK-------VKERIIEYLAVQSRASKI- 352
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247
IIC ++GPPGVGKT+L R IA+ ++++
Sbjct: 353 --KGPIIC----------LVGPPGVGKTSLARSIAKATGREYVR 384
>gi|335998609|ref|ZP_08564519.1| DNA repair protein RadA [Lactobacillus ruminis SPM0211]
gi|335348063|gb|EGM49571.1| DNA repair protein RadA [Lactobacillus ruminis SPM0211]
Length = 457
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 13/113 (11%)
Query: 201 RAVAGSAEIICDLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIV--D 253
R V +AE+ + V GGG +L+ G PG+GK+T++ +++ LAD K + + +
Sbjct: 71 RIVTKNAEL--NRVLGGGIVPSSMVLIGGDPGIGKSTMLLQLSGELADMGGKVLYVSGEE 128
Query: 254 TSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
++N+I D G+G + P +MQ +++ VE+ P+ ++ID + T
Sbjct: 129 SANQIKMRAD--RLGVGGSEFYLYPETDMQS--ILQNVEDLKPDYVVIDSVQT 177
>gi|254804660|ref|YP_003082881.1| DNA repair protein RadA [Neisseria meningitidis alpha14]
gi|385854927|ref|YP_005901440.1| DNA repair protein RadA [Neisseria meningitidis M01-240355]
gi|254668202|emb|CBA04946.1| DNA repair protein [Neisseria meningitidis alpha14]
gi|325203868|gb|ADY99321.1| DNA repair protein RadA [Neisseria meningitidis M01-240355]
Length = 459
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 20/106 (18%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
D V GGG IL+ G PG+GK+TL+ + +A ++V+ V G+
Sbjct: 80 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTITKMAQS--RKVLYVS------GEESAQQ 131
Query: 267 SGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
+ RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 132 VAL-RAQRLELPTEGVNLLAEIRMEAIQTALKQHQPEVVVIDSIQT 176
>gi|42520202|ref|NP_966117.1| ATP-dependent protease La [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42409940|gb|AAS14051.1| ATP-dependent protease La [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 817
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 20/103 (19%)
Query: 145 WVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVA 204
W++ K++D K ++ D+N GI++ +++R ++ + + RV + +
Sbjct: 309 WLLELPWGKYKDAKINLNAAKKILDENHYGIEK-------VKDRIIEFLAVLKRV-KEIK 360
Query: 205 GSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247
G I+C ++GPPGVGKT+L + +AR + D ++
Sbjct: 361 GP--ILC----------LVGPPGVGKTSLAKSMARAVGRDFVR 391
>gi|388543219|ref|ZP_10146510.1| ATPase [Pseudomonas sp. M47T1]
gi|388278531|gb|EIK98102.1| ATPase [Pseudomonas sp. M47T1]
Length = 346
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 194 GLTCRVGRAVAGSAEIICDLVEG---GGSILVIGPPGVGKTTLIREIARMLADDHMK 247
L +G+AV G +I D++ GG +L+ G PG+GKT L+R +AR D +
Sbjct: 39 ALRTELGKAVIGQPAVIEDVLTALIAGGHVLLEGVPGLGKTLLVRALARCFGGDFTR 95
>gi|425054795|ref|ZP_18458297.1| ComG operon protein 1 family protein [Enterococcus faecium 505]
gi|403035104|gb|EJY46509.1| ComG operon protein 1 family protein [Enterococcus faecium 505]
Length = 334
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 32/208 (15%)
Query: 130 MDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRK 189
MD+G K A+ + + + +Q V+ +S VGD+ S + R L+ IS +R
Sbjct: 90 MDIGEKRKAQLGALTYSLEKQKVRLR-----LSSVGDYLQ-RESLVIRLLYGISETLHR- 142
Query: 190 MQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRV 249
C R A I G L GP G GKT+L+ LA ++V
Sbjct: 143 -------CFSSRDFA----TILQKTARRGLYLFSGPVGSGKTSLMYR----LALKEKRQV 187
Query: 250 VIVDTSNEIGGDGDVPHSGIGRARRMQV-PNVNMQHSVMIEAVENHMPETIIIDEIGTEL 308
+ ++ EI + P ++Q+ P + + +++ H P+ +II EI E
Sbjct: 188 ITIEDPVEI----EEPF-----FLQLQINPKIAQTYDTLLKLALRHRPDLLIIGEIRDES 238
Query: 309 EALAASTIAQRGVQLVGTAHGMTIDNIV 336
A AA A G ++ T H ++ +
Sbjct: 239 TAHAAVRAALTGHRVFATVHARNLEGTL 266
>gi|268679515|ref|YP_003303946.1| DNA repair protein RadA [Sulfurospirillum deleyianum DSM 6946]
gi|268617546|gb|ACZ11911.1| DNA repair protein RadA [Sulfurospirillum deleyianum DSM 6946]
Length = 450
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 23/121 (19%)
Query: 198 RVGRAVAGSAEIICDLVEGGGSI-----LVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252
++ R +G +E+ DLV GGG + L+ G PGVGK+TL+ +IA LA + K+V+ V
Sbjct: 68 QIERYSSGDSEL--DLVLGGGIVQGSLTLIGGSPGVGKSTLLLKIAGNLAREG-KKVLYV 124
Query: 253 DTSNEIGGDGDVPHSGIG-RARRM--QVPNVNMQHSVMIEAV----ENHMPETIIIDEIG 305
G+ S I RA R+ P + + + ++ + E H E +IID I
Sbjct: 125 --------SGEESSSQIKLRANRVDSNYPTLYLLSEIRLDTIFKELEKHAFEVLIIDSIQ 176
Query: 306 T 306
T
Sbjct: 177 T 177
>gi|452993992|emb|CCQ94462.1| Stage III sporulation protein AB (modular protein) [Clostridium
ultunense Esp]
Length = 266
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 296 PETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQ 342
P+ +I DEIG E + +A G+ L+ TAHG +D I K P LQ
Sbjct: 8 PQLLITDEIGQEEDVVALLEAINAGIYLIATAHGEKLDEIEKRPILQ 54
>gi|336469355|gb|EGO57517.1| hypothetical protein NEUTE1DRAFT_81158 [Neurospora tetrasperma FGSC
2508]
gi|350291009|gb|EGZ72223.1| midasin [Neurospora tetrasperma FGSC 2509]
Length = 4929
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 30/162 (18%)
Query: 164 VGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVI 223
+GDFS + S D + R + KM + RV RA+ G+ I+ +
Sbjct: 1677 IGDFSIERLSSADPNSGREFGVPTTKMNAM----RVIRALQGTKPILLE----------- 1721
Query: 224 GPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDG-DVPHSGIGRARRMQVPNVNM 282
G PGVGKTTL+ +AR + R+ + D ++ + G DVP G + N
Sbjct: 1722 GNPGVGKTTLVTALARACGRP-LTRINLSDQTDLMDLFGTDVPVEG------AEAGNFCW 1774
Query: 283 QHSVMIEAVENHMPETIIIDEIG----TELEALAASTIAQRG 320
+++ +EA++N +++DE+ T LE L A + RG
Sbjct: 1775 KNAPFLEAMQNG--SWVLLDEMNLASQTVLEGLNA-CLDHRG 1813
>gi|406602796|emb|CCH45670.1| Ribosome biogenesis protein [Wickerhamomyces ciferrii]
Length = 1192
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGI-GRARRMQVP 278
+ V+GPPG GKTTLIR + R L T +EI G P + + G+ RR+
Sbjct: 74 VAVVGPPGTGKTTLIRSLVRRLTK---------HTLSEIKG----PITVVSGKRRRLTFI 120
Query: 279 NVNMQHSVMIEAVENHMPETIIID-EIGTELEALAASTIAQRGVQLVGTAHGM 330
V + MI+A + +++D G E+E + IAQ HGM
Sbjct: 121 EVANDMNSMIDAAKIADLVLLMVDGNFGLEMETMEFLNIAQH--------HGM 165
>gi|399545471|ref|YP_006558779.1| Lon protease [Marinobacter sp. BSs20148]
gi|399160803|gb|AFP31366.1| Lon protease [Marinobacter sp. BSs20148]
Length = 805
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+++ K ++H I + + D++ G+D ++ R ++ + + RV + +
Sbjct: 296 DWMLAVPWKKRSRVRHDIDRAREILDEDHYGLDE-------VKTRILEYLAVQTRV-KKI 347
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
G ++C ++GPPGVGKT+L + IAR
Sbjct: 348 KGP--VLC----------LVGPPGVGKTSLGQSIAR 371
>gi|424827469|ref|ZP_18252273.1| negative regulator of genetic competence MecB/ClpC [Clostridium
sporogenes PA 3679]
gi|365980083|gb|EHN16120.1| negative regulator of genetic competence MecB/ClpC [Clostridium
sporogenes PA 3679]
Length = 811
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 48/213 (22%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHM------KRVVIVDTSNEIGGD 261
EI+C + + IG PGVGKT + +A+ + + ++ KRVV +D ++ I G
Sbjct: 196 EILCRRTKNNPCL--IGEPGVGKTAIAEGLAQNIINGNIPEILKNKRVVTLDLTSMIAG- 252
Query: 262 GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGV 321
+ G R ++ +E V N + IDEI T + A
Sbjct: 253 --AKYRGEFEDRLKKI----------MEEVRNSKDTILFIDEIHTIVGA----------- 289
Query: 322 QLVGTAHGMTID--NIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERK------GP 373
G A G ID NI+K + + I + TL +E +K + + LER+ G
Sbjct: 290 ---GAAEG-AIDAANILKPALARGEIQCIGATTL--DEYRKYIEKDSALERRFQPINVGE 343
Query: 374 PTFTCAVEMIS--RTECRVHHRLDATVDAILAG 404
PT +E++ R + HHR+ T DAI A
Sbjct: 344 PTKEETIEILKGLRDKYEAHHRVKFTDDAIYAA 376
>gi|313123375|ref|YP_004033634.1| type ii secretory pathway/competence component, ATPase
[Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312279938|gb|ADQ60657.1| Type II secretory pathway/competence component, ATPase
[Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 323
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 30/182 (16%)
Query: 210 ICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGI 269
+ DL G I+ GP G GKTT + E+AR L+ M V+ ++ E+ +
Sbjct: 124 LVDLCWLRGMIVTSGPTGSGKTTTMYELARKLSQTKM--VMTIEDPVEVYEESFF----- 176
Query: 270 GRARRMQV-PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAH 328
+ QV + ++ +++A H P+ +II EI E A A A G ++ T H
Sbjct: 177 ----QAQVNAGAGISYASLLKAALRHRPDVLIIGEIRDEETAHLAVDAALSGHLVLATVH 232
Query: 329 GM-TIDNIVKNPSLQI----LVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMI 383
T I + SL + LV + +V+ Q+ + KGP C +++
Sbjct: 233 AKSTYQTISRLESLGVKNNELVNCLTAVS----------YQRLLPGEKGP---ACLLDLA 279
Query: 384 SR 385
SR
Sbjct: 280 SR 281
>gi|1655939|gb|AAC44747.1| lon protease [Vibrio parahaemolyticus]
Length = 783
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +K ++K + +++ G++R ++ R ++ + + R+ +
Sbjct: 295 DWMVSVPWTKRSKVKKNLAKAEEILNEDHYGLER-------VKERILEYLAVQNRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>gi|375264873|ref|YP_005022316.1| ATP-dependent protease LA [Vibrio sp. EJY3]
gi|369840197|gb|AEX21341.1| ATP-dependent protease LA [Vibrio sp. EJY3]
Length = 783
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +K ++K + +++ G++R ++ R ++ + + R+ +
Sbjct: 295 DWMVSVPWAKRSKVKKNLAKAEEILNEDHYGLER-------VKERILEYLAVQNRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>gi|170694381|ref|ZP_02885535.1| GTP-binding signal recognition particle SRP54 G- domain
[Burkholderia graminis C4D1M]
gi|170140804|gb|EDT08978.1| GTP-binding signal recognition particle SRP54 G- domain
[Burkholderia graminis C4D1M]
Length = 742
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 20/177 (11%)
Query: 213 LVEGGGSILVIGPPGVGKTTLIREI-ARMLADDHMKRVVIVDT-SNEIGGDGDVPHSGIG 270
L+E GG ++GP GVGKTT ++ AR + +V ++ T S IGG + G
Sbjct: 506 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQL--RIFG 563
Query: 271 RARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG-TELEALAASTIA---------QRG 320
+ + V V + + E ++ID IG ++ + L + IA QR
Sbjct: 564 KILGVSVHAVKDSADLQLALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLSRAGQPVQRL 623
Query: 321 VQLVGTAHGMTIDNIV----KNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGP 373
+ L T+HG T++ +V + P Q L G I +T DE V T++ K P
Sbjct: 624 LLLNATSHGDTLNEVVQAYQRGPDQQPLAGCI--LTKLDEATNLGGVLDTVIRYKLP 678
>gi|389860619|ref|YP_006362859.1| type II secretion system protein E [Thermogladius cellulolyticus
1633]
gi|388525523|gb|AFK50721.1| type II secretion system protein E [Thermogladius cellulolyticus
1633]
Length = 496
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 91/192 (47%), Gaps = 14/192 (7%)
Query: 184 AIRNRKMQVIGLTCRVGRAVAGS--AEIICDLVEGGGSILVIGPPGVGKTTLIREIARML 241
IR R + LT + + V S A + ++E G ++V G G GKTTL++ + ++
Sbjct: 224 VIRKRPEKPWTLTQLINQGVLNSLIAAYLWLVIELKGWVIVAGGVGAGKTTLLQGLLNLI 283
Query: 242 ADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIII 301
+ +RVV ++ + E+ + + R + P N+ +++A P+ I++
Sbjct: 284 P--YNRRVVTIEDTPELFLSSEQWDPLVERVSVID-PGTNIDMYGLLKASLRRRPDYIVV 340
Query: 302 DEI-GTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSL------QILVGGIESVTLG 354
E+ G E L ++ GV + T HG + D+++K + + L+G I S+ +
Sbjct: 341 GEVRGVEARVLVQASRLGHGV--LNTIHGDSPDSVLKRLTAYPISIPKNLLGNIWSIVIV 398
Query: 355 DEEAKKRKVQKT 366
++ R+V +
Sbjct: 399 EQTGYGRRVTRV 410
>gi|313668739|ref|YP_004049023.1| DNA repair protein [Neisseria lactamica 020-06]
gi|313006201|emb|CBN87663.1| putative DNA repair protein [Neisseria lactamica 020-06]
Length = 464
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 22/107 (20%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
D V GGG IL+ G PG+GK+T L++ IA+M + V +++ ++
Sbjct: 85 DRVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVA------ 138
Query: 266 HSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
RA+R+++P VN+ + +EA++ H PE ++ID I T
Sbjct: 139 ----LRAQRLELPTEGVNLLAEIRMEAIQTALKQHRPEVVVIDSIQT 181
>gi|60117288|gb|AAX14419.1| ATP-dependent protease La [Wolbachia endosymbiont of Drosophila
mojavensis]
Length = 268
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 20/103 (19%)
Query: 145 WVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVA 204
W++ K++D K ++ D+N GI++ +++R ++ + + RV + +
Sbjct: 44 WLLELPWGKYKDAKINLNAAKKILDENHYGIEK-------VKDRIIEFLAVLKRV-KEIK 95
Query: 205 GSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247
G I+C ++GPPGVGKT+L + +AR + D ++
Sbjct: 96 GP--ILC----------LVGPPGVGKTSLAKSMARAVGRDFVR 126
>gi|307731374|ref|YP_003908598.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1003]
gi|307585909|gb|ADN59307.1| flagellar biosynthetic protein FlhF [Burkholderia sp. CCGE1003]
Length = 655
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 20/177 (11%)
Query: 213 LVEGGGSILVIGPPGVGKTTLIREI-ARMLADDHMKRVVIVDT-SNEIGGDGDVPHSGIG 270
L+E GG ++GP GVGKTT ++ AR + +V ++ T S IGG + G
Sbjct: 419 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQL--RIFG 476
Query: 271 RARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG-TELEALAASTIA---------QRG 320
+ + V V + + E ++ID IG ++ + L + IA QR
Sbjct: 477 KILGVSVHAVKDSADLQLALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLSRAGQPVQRL 536
Query: 321 VQLVGTAHGMTIDNIV----KNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGP 373
+ L T+HG T++ +V + P Q L G I +T DE V T++ K P
Sbjct: 537 LLLNATSHGDTLNEVVQAYQRGPDQQPLAGCI--LTKLDEATNLGGVLDTVIRYKLP 591
>gi|420253924|ref|ZP_14756954.1| flagellar biosynthetic protein FlhF [Burkholderia sp. BT03]
gi|398050498|gb|EJL42860.1| flagellar biosynthetic protein FlhF [Burkholderia sp. BT03]
Length = 625
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 20/177 (11%)
Query: 213 LVEGGGSILVIGPPGVGKTTLIREI-ARMLADDHMKRVVIVDT-SNEIGGDGDVPHSGIG 270
L+E GG ++GP GVGKTT ++ AR + +V ++ T S IGG + G
Sbjct: 389 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQL--RIFG 446
Query: 271 RARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG-TELEALAASTIA---------QRG 320
+ + V V + + E ++ID IG ++ + L + IA QR
Sbjct: 447 KILGVSVHAVKDSADLQLALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLCRAGQHVQRL 506
Query: 321 VQLVGTAHGMTIDNIVK----NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGP 373
+ L T+HG T++ +V+ P Q L G I +T DE V T++ K P
Sbjct: 507 LLLNATSHGDTLNEVVQAYQNAPDQQPLAGCI--LTKLDEATNLGSVLDTVIRYKLP 561
>gi|328950168|ref|YP_004367503.1| anti-sigma H sporulation factor LonB [Marinithermus hydrothermalis
DSM 14884]
gi|328450492|gb|AEB11393.1| anti-sigma H sporulation factor, LonB [Marinithermus hydrothermalis
DSM 14884]
Length = 824
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGL-TCRVGRA 202
DW++ + + + + + D++ G+++ +++R ++ + + + RA
Sbjct: 307 DWIVHLPWNTRTEDQLDLKRASEILDEDHYGLEK-------VKDRVLEYLAVRKLKADRA 359
Query: 203 VAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247
G EI + V G +L +GPPGVGKT++ + IAR L +++
Sbjct: 360 ARG--EIPKEEVNRGPILLFVGPPGVGKTSIAKSIARALGRKYVR 402
>gi|342885698|gb|EGU85680.1| hypothetical protein FOXB_03826 [Fusarium oxysporum Fo5176]
Length = 766
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 98/254 (38%), Gaps = 43/254 (16%)
Query: 58 KPTPPSIHPPTVRRPSDWAPP----------RNGSV--SDSPNSASTSRSGADIELELFL 105
KPTP I PT + PP RNG V D P A T R A+ E + +
Sbjct: 181 KPTPKGILTPTKKGRPRGRPPKNVSFGAGQDRNGEVFFEDLPKKAKTPRKAANSEADELV 240
Query: 106 ELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH------ 159
+ + + L D+ + + + P GDW + + + + LK
Sbjct: 241 CAICIKPHSQPPNQIILCDMCDFAVHQECYGVPDIPEGDW-LCKSCTQEDILKTPKKTAG 299
Query: 160 ----AISKVGDFSD-DNRSGIDRSLHRISAIR---NRKMQVIGLTCRVGRAVAGSAEIIC 211
AI D D N RSL R+ R R++Q+ G + E +
Sbjct: 300 VEVPAIKIAADVPDIANLEQHVRSLQRVLLDRCTGRRRLQLPGQL--------EAEEKVY 351
Query: 212 DLVEG------GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
LVE G S+LVIG G GKTTL+ ++ ++ +H +V + I D +
Sbjct: 352 QLVEQTVVAGEGNSMLVIGGRGCGKTTLLEKVISDVSQEHKNDFHVVRLNGFIHTDDKLA 411
Query: 266 HSGIGR--ARRMQV 277
I R + MQV
Sbjct: 412 LKEIWRQLGKEMQV 425
>gi|77406337|ref|ZP_00783400.1| competence protein CglA [Streptococcus agalactiae H36B]
gi|77175042|gb|EAO77848.1| competence protein CglA [Streptococcus agalactiae H36B]
Length = 323
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
G L GP G GKTTL+ ++A + + K+++ ++ EI D + ++Q+
Sbjct: 133 GLYLFSGPVGSGKTTLMYQLASEVFKN--KQIITIEDPVEIKND---------KMLQLQL 181
Query: 278 -PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTI 332
++ M + +I+ H P+ +II EI + A A + GV T H +I
Sbjct: 182 NEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMFFSTIHAKSI 237
>gi|242054405|ref|XP_002456348.1| hypothetical protein SORBIDRAFT_03g034390 [Sorghum bicolor]
gi|241928323|gb|EES01468.1| hypothetical protein SORBIDRAFT_03g034390 [Sorghum bicolor]
Length = 915
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 186 RNRKMQVIGLTCRVGRAVAGSAEIICDLVEG--------------GGSILVIGPPGVGKT 231
+N K +++GL R+ R V G E + + E GS L +GP GVGKT
Sbjct: 556 QNDKERLVGLADRLHRRVIGQHEAVNAIAEAVLRSRAGLGRTQQPTGSFLFLGPTGVGKT 615
Query: 232 TLIREIARMLADDHMKRVVIVDTS 255
L + +A L DD K +V +D S
Sbjct: 616 ELAKALAEQLFDDE-KLLVRLDMS 638
>gi|339483576|ref|YP_004695362.1| flagellar biosynthetic protein FlhF [Nitrosomonas sp. Is79A3]
gi|338805721|gb|AEJ01963.1| flagellar biosynthetic protein FlhF [Nitrosomonas sp. Is79A3]
Length = 429
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 26/184 (14%)
Query: 212 DLVEGGGSILVIGPPGVGKTTLIREI-ARMLADDHMKRVVIVDT-SNEIGGDGDVPHSGI 269
D++E GG +IGP GVGKTT ++ AR + +V ++ T S IGG + G
Sbjct: 191 DMIEKGGVYALIGPTGVGKTTTTAKLAARCVIRHGADKVALLTTDSYRIGGHEQLRIYG- 249
Query: 270 GRARRMQVPNVNMQHS-----VMIEAVENHMPETIIIDEIG-TELEALAASTI------- 316
+ + +P N++ + + E HM ++ID +G ++ + + A I
Sbjct: 250 ---QLLGIPVRNIKDTDDLQLTLSELKNKHM---VLIDTVGMSQRDQMVAEQITMLSNCG 303
Query: 317 --AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPP 374
+R + L ++G T+D ++ + G I +T DE A V ++ RK P
Sbjct: 304 TDVKRMLILSAASNGKTLDEVISAHQKSGIYGCI--ITKVDEAASLGVVLDVVIRRKLPL 361
Query: 375 TFTC 378
+
Sbjct: 362 HYVA 365
>gi|407715104|ref|YP_006835669.1| flagellar biosynthesis protein FlhF [Burkholderia phenoliruptrix
BR3459a]
gi|407237288|gb|AFT87487.1| flagellar biosynthesis protein FlhF [Burkholderia phenoliruptrix
BR3459a]
Length = 676
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 20/177 (11%)
Query: 213 LVEGGGSILVIGPPGVGKTTLIREI-ARMLADDHMKRVVIVDT-SNEIGGDGDVPHSGIG 270
L+E GG ++GP GVGKTT ++ AR + +V ++ T S IGG + G
Sbjct: 440 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQL--RIFG 497
Query: 271 RARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG-TELEALAASTIA---------QRG 320
+ + V V + + E ++ID IG ++ + L + IA QR
Sbjct: 498 KILGVSVHAVKDSADLQLALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLSRAGQPVQRL 557
Query: 321 VQLVGTAHGMTIDNIV----KNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGP 373
+ L T+HG T++ +V + P Q L G I +T DE V T++ K P
Sbjct: 558 LLLNATSHGDTLNEVVQAYQRGPDQQPLAGCI--LTKLDEATNLGGVLDTVIRYKLP 612
>gi|357636533|ref|ZP_09134408.1| type II/IV secretion system protein [Streptococcus macacae NCTC
11558]
gi|357584987|gb|EHJ52190.1| type II/IV secretion system protein [Streptococcus macacae NCTC
11558]
Length = 313
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 210 ICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGI 269
+ + + G G L GP G GKTTL+ +IAR K+++ ++ EI
Sbjct: 125 VLNAIRGRGLYLFSGPVGSGKTTLMYQIAR--EKFFNKQIITIEDPVEIK---------- 172
Query: 270 GRARRMQVP---NVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGT 326
A +Q+ N+ M + +I+ H P+ +II EI A A + GV ++ T
Sbjct: 173 -EANMLQLQLNENIGMTYDSLIKLSLRHRPDILIIGEIRDRETARAVIRASLTGVLVMST 231
Query: 327 AHGMTI 332
H +I
Sbjct: 232 VHAKSI 237
>gi|260879439|ref|ZP_05891794.1| endopeptidase La [Vibrio parahaemolyticus AN-5034]
gi|308093193|gb|EFO42888.1| endopeptidase La [Vibrio parahaemolyticus AN-5034]
Length = 747
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +K ++K + +++ G++R ++ R ++ + + R+ +
Sbjct: 295 DWMVSVPWTKRSKVKKNLAKAEEILNEDHYGLER-------VKERILEYLAVQNRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>gi|156937799|ref|YP_001435595.1| type II secretion system protein E [Ignicoccus hospitalis KIN4/I]
gi|156566783|gb|ABU82188.1| type II secretion system protein E [Ignicoccus hospitalis KIN4/I]
Length = 568
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 197 CRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN 256
R+G A + LV+ S LV+G GKTT++ IA M+ + ++V + +
Sbjct: 282 VRLGTISPEIAAYLWILVDSINSALVVGAMASGKTTMLNAIAMMIPPE--SKIVTAEDTP 339
Query: 257 EIGGDGDVPHSGIGR--ARRMQVPNV-NMQHSVMIEAVENHMPETIIIDEIGTELEALAA 313
EI +PH R P V N+ ++++ PE II+ EI E EA
Sbjct: 340 EI----RLPHENWVAMVTRPSNEPGVANITLYDLLKSALRQRPEFIIVGEIRGE-EAFTF 394
Query: 314 STIAQRGVQLVGTAHGMTIDNIVK 337
G +GT HG TID +K
Sbjct: 395 FQAVSVGHGGLGTVHGETIDAAIK 418
>gi|75908510|ref|YP_322806.1| ATPase [Anabaena variabilis ATCC 29413]
gi|75702235|gb|ABA21911.1| ATPase associated with various cellular activities [Anabaena
variabilis ATCC 29413]
Length = 316
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 192 VIGLTCRVGRAVAGSAEIICDLVEG---GGSILVIGPPGVGKTTLIREIARML-ADDH 245
+I L ++ R + G +++I L+ G GG I++ G PG GKT L++ +AR++ AD H
Sbjct: 8 LIHLGEKLNRVIVGQSQLIQQLLVGLLSGGHIILEGVPGTGKTLLVKVLARLIQADFH 65
>gi|226950963|ref|YP_002806054.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum A2 str. Kyoto]
gi|226843529|gb|ACO86195.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum A2 str. Kyoto]
Length = 811
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 48/213 (22%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHM------KRVVIVDTSNEIGGD 261
EI+C + + IG PGVGKT + +A+ + D ++ KRVV +D ++ I G
Sbjct: 196 EILCRRTKNNPCL--IGEPGVGKTAIAEGLAQNIIDGNIPEILKNKRVVTLDLTSMIAG- 252
Query: 262 GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGV 321
+ G R ++ +E V + + IDEI T + A
Sbjct: 253 --AKYRGEFEDRLKKI----------MEEVRSSKDTILFIDEIHTIVGA----------- 289
Query: 322 QLVGTAHGMTID--NIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERK------GP 373
G A G ID NI+K + + I + TL +E +K + + LER+ G
Sbjct: 290 ---GAAEG-AIDAANILKPALARGEIQCIGATTL--DEYRKYIEKDSALERRFQPINVGE 343
Query: 374 PTFTCAVEMIS--RTECRVHHRLDATVDAILAG 404
PT +E++ R + HHR+ T DAI A
Sbjct: 344 PTKEETIEILKGLRDKYEAHHRVKFTDDAIYAA 376
>gi|433657176|ref|YP_007274555.1| ATP-dependent protease La Type I, LonS [Vibrio parahaemolyticus
BB22OP]
gi|432507864|gb|AGB09381.1| ATP-dependent protease La Type I, LonS [Vibrio parahaemolyticus
BB22OP]
Length = 783
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +K ++K + +++ G++R ++ R ++ + + R+ +
Sbjct: 295 DWMVSVPWTKRSKVKKNLAKAEEILNEDHYGLER-------VKERILEYLAVQNRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>gi|168178801|ref|ZP_02613465.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum NCTC 2916]
gi|182670016|gb|EDT81992.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum NCTC 2916]
Length = 811
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 48/213 (22%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHM------KRVVIVDTSNEIGGD 261
EI+C + + IG PGVGKT + +A+ + D ++ KRVV +D ++ I G
Sbjct: 196 EILCRRTKNNPCL--IGEPGVGKTAIAEGLAQNIIDGNIPEILKNKRVVTLDLTSMIAG- 252
Query: 262 GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGV 321
+ G R ++ +E V + + IDEI T + A
Sbjct: 253 --AKYRGEFEDRLKKI----------MEEVRSSKDTILFIDEIHTIVGA----------- 289
Query: 322 QLVGTAHGMTID--NIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERK------GP 373
G A G ID NI+K + + I + TL +E +K + + LER+ G
Sbjct: 290 ---GAAEG-AIDAANILKPALARGEIQCIGATTL--DEYRKYIEKDSALERRFQPINVGE 343
Query: 374 PTFTCAVEMIS--RTECRVHHRLDATVDAILAG 404
PT +E++ R + HHR+ T DAI A
Sbjct: 344 PTKEETIEILKGLRDKYEAHHRVKFTDDAIYAA 376
>gi|94498577|ref|ZP_01305131.1| methanol dehydrogenase regulator [Sphingomonas sp. SKA58]
gi|94421941|gb|EAT06988.1| methanol dehydrogenase regulator [Sphingomonas sp. SKA58]
Length = 329
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDLVEG---GGSILVIGPPGVGKTTLIREIARML 241
I+ R ++ L +G+A+ G A+I+ L+ G GG L+ G PG+GKT L+R + L
Sbjct: 9 IQARLARLADLRAAIGQAIVGQADIVEQLLIGLLAGGHCLLEGVPGLGKTLLVRSLGEAL 68
Query: 242 ADDHMKRV 249
D +RV
Sbjct: 69 KLD-FRRV 75
>gi|28897693|ref|NP_797298.1| ATP-dependent protease LA [Vibrio parahaemolyticus RIMD 2210633]
gi|260366279|ref|ZP_05778735.1| endopeptidase La [Vibrio parahaemolyticus K5030]
gi|417320361|ref|ZP_12106907.1| ATP-dependent protease LA [Vibrio parahaemolyticus 10329]
gi|29611938|sp|P74956.2|LON_VIBPA RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La
gi|28805906|dbj|BAC59182.1| ATP-dependent protease LA [Vibrio parahaemolyticus RIMD 2210633]
gi|308114047|gb|EFO51587.1| endopeptidase La [Vibrio parahaemolyticus K5030]
gi|328473324|gb|EGF44172.1| ATP-dependent protease LA [Vibrio parahaemolyticus 10329]
Length = 783
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +K ++K + +++ G++R ++ R ++ + + R+ +
Sbjct: 295 DWMVSVPWTKRSKVKKNLAKAEEILNEDHYGLER-------VKERILEYLAVQNRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>gi|340505502|gb|EGR31822.1| hypothetical protein IMG5_101260 [Ichthyophthirius multifiliis]
Length = 183
Score = 40.8 bits (94), Expect = 2.5, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL+ GPPG GKTTL R IA+ H I EI D S + ++ N
Sbjct: 82 ILLAGPPGSGKTTLARNIAK-----HCGYKTI-----EINASEDRTASKLIERIQIMTQN 131
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEA 310
++ S E +EN P II+DE+ LE+
Sbjct: 132 ETLKFSNQ-ENIENSKPSLIILDEVDGALES 161
>gi|260898292|ref|ZP_05906788.1| endopeptidase La [Vibrio parahaemolyticus Peru-466]
gi|308088426|gb|EFO38121.1| endopeptidase La [Vibrio parahaemolyticus Peru-466]
Length = 789
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +K ++K + +++ G++R ++ R ++ + + R+ +
Sbjct: 295 DWMVSVPWTKRSKVKKNLAKAEEILNEDHYGLER-------VKERILEYLAVQNRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>gi|188996195|ref|YP_001930446.1| DNA repair protein RadA [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931262|gb|ACD65892.1| DNA repair protein RadA [Sulfurihydrogenibium sp. YO3AOP1]
Length = 448
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
G +LV G PGVGK+TL+ +I+ A+D K+V+ + + + RA R+
Sbjct: 88 GQVVLVSGEPGVGKSTLLLQISSYFAND--KKVLYISAE-------ESQYQIYIRAERLN 138
Query: 277 VPNVNM------QHSVMIEAVENHMPETIIIDEIGT 306
N+ +++A+EN P+ I++D + T
Sbjct: 139 ALKENLYILSETNLEAILQAIENIKPDLIVLDSVQT 174
>gi|421837623|ref|ZP_16271749.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum CFSAN001627]
gi|409740189|gb|EKN40560.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum CFSAN001627]
Length = 637
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 48/213 (22%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHM------KRVVIVDTSNEIGGD 261
EI+C + + IG PGVGKT + +A+ + D ++ KRVV +D ++ I G
Sbjct: 22 EILCRRTKNNPCL--IGEPGVGKTAIAEGLAQNIIDGNIPEILKNKRVVTLDLTSMIAG- 78
Query: 262 GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGV 321
+ G R ++ +E V + + IDEI T + A
Sbjct: 79 --AKYRGEFEDRLKKI----------MEEVRSSKDTILFIDEIHTIVGA----------- 115
Query: 322 QLVGTAHGMTID--NIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERK------GP 373
G A G ID NI+K + + I + TL +E +K + + LER+ G
Sbjct: 116 ---GAAEG-AIDAANILKPALARGEIQCIGATTL--DEYRKYIEKDSALERRFQPINVGE 169
Query: 374 PTFTCAVEMIS--RTECRVHHRLDATVDAILAG 404
PT +E++ R + HHR+ T DAI A
Sbjct: 170 PTKEETIEILKGLRDKYEAHHRVKFTDDAIYAA 202
>gi|167571640|ref|ZP_02364514.1| flagellar biosynthesis regulator FlhF [Burkholderia oklahomensis
C6786]
Length = 383
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 16/138 (11%)
Query: 213 LVEGGGSILVIGPPGVGKTTLIREI-ARMLADDHMKRVVIVDT-SNEIGGDGD------- 263
L+E GG ++GP GVGKTT ++ AR + +V ++ T S IGG
Sbjct: 142 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKI 201
Query: 264 --VPHSGI--GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
VP + G ++ + + +H V+I+ + + ++ D+I A T QR
Sbjct: 202 LGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGMSQRDRMVSDQIAM---LYGADTPVQR 258
Query: 320 GVQLVGTAHGMTIDNIVK 337
+ L T+HG T++ +V+
Sbjct: 259 LLLLNATSHGDTLNEVVQ 276
>gi|428212247|ref|YP_007085391.1| DNA repair protein RadA [Oscillatoria acuminata PCC 6304]
gi|428000628|gb|AFY81471.1| DNA repair protein RadA [Oscillatoria acuminata PCC 6304]
Length = 611
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 17/83 (20%)
Query: 169 DDNRS-GIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGG-----SILV 222
D N+S G RS ++S I + + R +G E+ D V GGG +L+
Sbjct: 62 DQNKSEGQPRSSFKLSQIAEQS---------IARCSSGYGEM--DRVLGGGIVPGSLVLI 110
Query: 223 IGPPGVGKTTLIREIARMLADDH 245
G PG+GK+TL+ ++AR LA DH
Sbjct: 111 GGEPGIGKSTLLLQVARNLALDH 133
>gi|345010347|ref|YP_004812701.1| cell division protein FtsK [Streptomyces violaceusniger Tu 4113]
gi|344036696|gb|AEM82421.1| cell division FtsK/SpoIIIE [Streptomyces violaceusniger Tu 4113]
Length = 1335
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 176 DRSLHRISAIRNRKMQV-IGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLI 234
DR LH S R M+V +G+ R A + DL GG +IG P GKTTL+
Sbjct: 793 DRGLHLTS--RPDPMRVPLGVLDDPARQW--QAPWLLDLTVAGGHAAIIGGPQTGKTTLL 848
Query: 235 REIARMLADDHMKRVVIVDTSNEIGGD----GDVPHSG--IGRA 272
R +A L+ H R V + + GG D+PH G GRA
Sbjct: 849 RTLALSLSLTHTPREVALYGLDLAGGGLSALTDLPHVGGIAGRA 892
>gi|262394813|ref|YP_003286667.1| ATP-dependent protease La Type I [Vibrio sp. Ex25]
gi|451970183|ref|ZP_21923410.1| ATP-dependent protease La Type I [Vibrio alginolyticus E0666]
gi|262338407|gb|ACY52202.1| ATP-dependent protease La Type I [Vibrio sp. Ex25]
gi|451933697|gb|EMD81364.1| ATP-dependent protease La Type I [Vibrio alginolyticus E0666]
Length = 783
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +K ++K + +++ G++R ++ R ++ + + R+ +
Sbjct: 295 DWMVSVPWAKRSKVKKNLAKAEEILNEDHYGLER-------VKERILEYLAVQNRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>gi|153839643|ref|ZP_01992310.1| ATP-dependent protease La, partial [Vibrio parahaemolyticus AQ3810]
gi|149746833|gb|EDM57821.1| ATP-dependent protease La [Vibrio parahaemolyticus AQ3810]
Length = 742
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +K ++K + +++ G++R ++ R ++ + + R+ +
Sbjct: 295 DWMVSVPWTKRSKVKKNLAKAEEILNEDHYGLER-------VKERILEYLAVQNRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>gi|239831862|ref|ZP_04680191.1| ATP-dependent protease La [Ochrobactrum intermedium LMG 3301]
gi|444308445|ref|ZP_21144090.1| ATP-dependent protease La [Ochrobactrum intermedium M86]
gi|239824129|gb|EEQ95697.1| ATP-dependent protease La [Ochrobactrum intermedium LMG 3301]
gi|443488028|gb|ELT50785.1| ATP-dependent protease La [Ochrobactrum intermedium M86]
Length = 812
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 26/107 (24%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRIS---AIRNRKMQVIGLTCRVG 200
DW++S K +K ++ + DD G+D+ RI A++ R ++ G
Sbjct: 307 DWLLSIPWGKKSKIKQDLNFAEEVLDDEHFGLDKVKERIVEYLAVQARSTKIKG------ 360
Query: 201 RAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247
I+C ++GPPGVGKT+L R IA+ ++++
Sbjct: 361 -------PILC----------LVGPPGVGKTSLARSIAKATGREYVR 390
>gi|187776547|ref|ZP_02993020.1| hypothetical protein CLOSPO_00059 [Clostridium sporogenes ATCC
15579]
gi|187775206|gb|EDU39008.1| ATPase family associated with various cellular activities (AAA)
[Clostridium sporogenes ATCC 15579]
Length = 814
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 48/213 (22%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHM------KRVVIVDTSNEIGGD 261
EI+C + + IG PGVGKT + +A+ + + ++ KRVV +D ++ I G
Sbjct: 199 EILCRRTKNNPCL--IGEPGVGKTAIAEGLAQNIINGNIPEILKNKRVVTLDLTSMIAG- 255
Query: 262 GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGV 321
+ G R ++ +E V N + IDEI T + A
Sbjct: 256 --AKYRGEFEDRLKKI----------MEEVRNSKDTILFIDEIHTIVGA----------- 292
Query: 322 QLVGTAHGMTID--NIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERK------GP 373
G A G ID NI+K + + I + TL +E +K + + LER+ G
Sbjct: 293 ---GAAEG-AIDAANILKPALARGEIQCIGATTL--DEYRKYIEKDSALERRFQPINVGE 346
Query: 374 PTFTCAVEMIS--RTECRVHHRLDATVDAILAG 404
PT +E++ R + HHR+ T DAI A
Sbjct: 347 PTKEETIEILKGLRDKYEAHHRVKFTDDAIYAA 379
>gi|187925772|ref|YP_001897414.1| flagellar biosynthesis regulator FlhF [Burkholderia phytofirmans
PsJN]
gi|187716966|gb|ACD18190.1| GTP-binding signal recognition particle SRP54 G- domain
[Burkholderia phytofirmans PsJN]
Length = 624
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 22/178 (12%)
Query: 213 LVEGGGSILVIGPPGVGKTTLIREI-ARMLADDHMKRVVIVDT-SNEIGGDGDVPHSGI- 269
L+E GG ++GP GVGKTT ++ AR + +V ++ T S IGG + G
Sbjct: 388 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKI 447
Query: 270 ----------GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
G ++ + + +H V+I+ + + ++ D+I A QR
Sbjct: 448 LGVSVHAVKDGADLQLALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLCH---AGQPVQR 504
Query: 320 GVQLVGTAHGMTIDNIV----KNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGP 373
+ L T+HG T++ +V + P Q L G I +T DE V T++ K P
Sbjct: 505 LLLLNATSHGDTLNEVVQAYQRAPDQQPLAGCI--LTKLDEATNLGGVLDTVIRYKLP 560
>gi|159041094|ref|YP_001540346.1| ATPase [Caldivirga maquilingensis IC-167]
gi|157919929|gb|ABW01356.1| ATPase associated with various cellular activities AAA_5
[Caldivirga maquilingensis IC-167]
Length = 334
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 205 GSAEIICDLVEG---GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVD----TSNE 257
G E D++ G G ++++GP GVGKTTL EIA +LA D+ + + T+ E
Sbjct: 52 GLGEATLDVLSGLSVGRHVMIMGPVGVGKTTLAEEIASILALDNPPYIEVACHSHMTATE 111
Query: 258 IGGDGDV 264
+ GD D+
Sbjct: 112 LTGDIDI 118
>gi|456384792|gb|EMF50370.1| Ftsk/SpoIIIE family protein [Streptomyces bottropensis ATCC 25435]
Length = 1339
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 210 ICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGD----GDVP 265
+ DL GG VIG P GKTTL+R +A LA H V V + +GG +P
Sbjct: 835 VLDLTVAGGHAAVIGGPQSGKTTLLRTLALSLATTHTPADVAVYGLDLVGGGLSALAGLP 894
Query: 266 HSG--IGRARR 274
H G GRA R
Sbjct: 895 HVGGIAGRADR 905
>gi|92112643|ref|YP_572571.1| DNA repair protein RadA [Chromohalobacter salexigens DSM 3043]
gi|91795733|gb|ABE57872.1| DNA repair protein RadA [Chromohalobacter salexigens DSM 3043]
Length = 458
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 20/106 (18%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
D V GGG ++L+ G PG GK+TL+ + A LA H +V+ V G+ +
Sbjct: 86 DRVLGGGLVPGSAVLLGGNPGAGKSTLLLQTACKLAQSH--KVLYVT------GEESLSQ 137
Query: 267 SGIGRARRMQVP--NVNMQHSVMIEAV----ENHMPETIIIDEIGT 306
+ RA R+Q+P +NM IE V E P +IID I T
Sbjct: 138 VAM-RAHRLQLPVKGLNMLAETSIETVLAVAEREKPAVLIIDSIQT 182
>gi|148381451|ref|YP_001255992.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum A str. ATCC 3502]
gi|153932782|ref|YP_001385826.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum A str. ATCC 19397]
gi|153936468|ref|YP_001389233.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum A str. Hall]
gi|387819793|ref|YP_005680140.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB [Clostridium
botulinum H04402 065]
gi|148290935|emb|CAL85071.1| negative regulator of genetic competence [Clostridium botulinum A
str. ATCC 3502]
gi|152928826|gb|ABS34326.1| putative negative regulator of genetic competence MecB/ClpC
[Clostridium botulinum A str. ATCC 19397]
gi|152932382|gb|ABS37881.1| putative negative regulator of genetic competence MecB/ClpC
[Clostridium botulinum A str. Hall]
gi|322807837|emb|CBZ05412.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB [Clostridium
botulinum H04402 065]
Length = 811
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 48/213 (22%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHM------KRVVIVDTSNEIGGD 261
EI+C + + IG PGVGKT + +A+ + D ++ KRVV +D ++ I G
Sbjct: 196 EILCRRTKNNPCL--IGEPGVGKTAIAEGLAQNIIDGNIPEILKNKRVVTLDLTSMIAG- 252
Query: 262 GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGV 321
+ G R ++ +E V + + IDEI T + A
Sbjct: 253 --AKYRGEFEDRLKKI----------MEEVRSSKDTILFIDEIHTIVGA----------- 289
Query: 322 QLVGTAHGMTID--NIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERK------GP 373
G A G ID NI+K + + I + TL +E +K + + LER+ G
Sbjct: 290 ---GAAEG-AIDAANILKPALARGEIQCIGATTL--DEYRKYIEKDSALERRFQPINVGE 343
Query: 374 PTFTCAVEMIS--RTECRVHHRLDATVDAILAG 404
PT +E++ R + HHR+ T DAI A
Sbjct: 344 PTKEETIEILKGLRDKYEAHHRVKFTDDAIYAA 376
>gi|320100682|ref|YP_004176274.1| type II secretion system protein E [Desulfurococcus mucosus DSM
2162]
gi|319753034|gb|ADV64792.1| type II secretion system protein E [Desulfurococcus mucosus DSM
2162]
Length = 419
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN 256
A AE LVE G S+++ GPPG GKTTL+R I + K V+I DT
Sbjct: 210 ASVAEYFRMLVEKGMSLIIAGPPGSGKTTLLRSILYSYIPLNWKIVIIEDTGE 262
>gi|157374682|ref|YP_001473282.1| endopeptidase La [Shewanella sediminis HAW-EB3]
gi|157317056|gb|ABV36154.1| Endopeptidase La [Shewanella sediminis HAW-EB3]
Length = 781
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+IS + +K ++K D D + G+++ ++ R ++ + + RV +
Sbjct: 296 DWMISVPWYQRSKIKRDLAKAQDVLDTDHFGLEK-------VKERILEYLAVQSRVKQL- 347
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
I+C ++GPPGVGKT+L + IA+
Sbjct: 348 --KGPILC----------LVGPPGVGKTSLGQSIAK 371
>gi|169611376|ref|XP_001799106.1| hypothetical protein SNOG_08799 [Phaeosphaeria nodorum SN15]
gi|111062847|gb|EAT83967.1| hypothetical protein SNOG_08799 [Phaeosphaeria nodorum SN15]
Length = 494
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 27/145 (18%)
Query: 195 LTCRVGRAVAGSAEIICDLVEGGGS---ILVIGPPGVGKTTLIREIARMLADDHMKRVVI 251
L V R + D + G G +L+ GPPGVGKT +A +H++R +
Sbjct: 266 LLALVDRDQFSDGKTFDDFIGGKGQGMIMLLCGPPGVGKTLTAESVA-----EHLRRPLY 320
Query: 252 VDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEAL 311
++G +V S +G+A A+ H ++IDE +EA
Sbjct: 321 KLGGGDLGIAANVVESNLGKAL----------------ALSGHFGAVLLIDEADVFMEAR 364
Query: 312 AASTIAQR---GVQLVGTAHGMTID 333
+++ + + G+ ++ T +ID
Sbjct: 365 SSNNLQRNELVGITILTTNRMRSID 389
>gi|312870429|ref|ZP_07730550.1| type II/IV secretion system protein [Lactobacillus oris PB013-T2-3]
gi|311094046|gb|EFQ52369.1| type II/IV secretion system protein [Lactobacillus oris PB013-T2-3]
Length = 325
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Query: 212 DLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGR 271
DL++ G +L GP G GKTT + ++AR +AD + V+ ++ EI D P
Sbjct: 126 DLLKQRGLVLFAGPMGSGKTTTMYQLARQVADQQV--VMAIEDPVEI----DEP-----S 174
Query: 272 ARRMQVPNV-NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGM 330
++QV + M + ++ H P+ II EI A A G ++GT H
Sbjct: 175 FVQLQVNELAGMNYQQLLRLGLRHRPDVFIIGEIRDPETAQMTVQAALSGHLVLGTVHAQ 234
Query: 331 TIDNIV 336
+ +V
Sbjct: 235 NVFGVV 240
>gi|209522289|ref|ZP_03270917.1| GTP-binding signal recognition particle SRP54 G- domain
[Burkholderia sp. H160]
gi|209497283|gb|EDZ97510.1| GTP-binding signal recognition particle SRP54 G- domain
[Burkholderia sp. H160]
Length = 338
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 20/180 (11%)
Query: 213 LVEGGGSILVIGPPGVGKTTLIREI-ARMLADDHMKRVVIVDT-SNEIGGDGDVPHSGIG 270
L+E GG ++GP GVGKTT ++ AR + +V ++ T S IGG + G
Sbjct: 102 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQL--RIFG 159
Query: 271 RARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG-TELEALAASTIA---------QRG 320
+ + V V + + E ++ID IG ++ + L + IA QR
Sbjct: 160 KILGVSVHAVKDSADLQLALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLCRAGQPVQRL 219
Query: 321 VQLVGTAHGMTIDNIV----KNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTF 376
+ L T+HG T++ +V + P Q L G I +T DE V T++ K P +
Sbjct: 220 LLLNATSHGDTLNEVVQAYQRAPDQQPLAGCI--LTKIDEATNLGGVLDTVIRYKLPVHY 277
>gi|449881683|ref|ZP_21784582.1| putative ABC transporter, ATP-binding protein ComYA [Streptococcus
mutans SA38]
gi|449926059|ref|ZP_21800559.1| putative ABC transporter, ATP-binding protein ComYA [Streptococcus
mutans 4SM1]
gi|449160973|gb|EMB64199.1| putative ABC transporter, ATP-binding protein ComYA [Streptococcus
mutans 4SM1]
gi|449251010|gb|EMC49044.1| putative ABC transporter, ATP-binding protein ComYA [Streptococcus
mutans SA38]
Length = 313
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 206 SAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
S ++I + ++G G L GP G GKT+LI ++ ++ + K+V+ ++ EI D +
Sbjct: 121 SMDLILNEIKGRGLYLFSGPVGSGKTSLIYQLVKLRFE--TKQVITIEDPVEIKQDNML- 177
Query: 266 HSGIGRARRMQV-PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLV 324
++Q+ +++M + +I+ H P+ +II EI + A A + G +
Sbjct: 178 --------QLQLNESIDMTYDNLIKLSLRHRPDILIIGEIRDKETARAVIRASLTGAMVF 229
Query: 325 GTAHGMTI 332
T H +I
Sbjct: 230 STIHAKSI 237
>gi|307546696|ref|YP_003899175.1| DNA repair protein RadA [Halomonas elongata DSM 2581]
gi|307218720|emb|CBV43990.1| DNA repair protein RadA [Halomonas elongata DSM 2581]
Length = 485
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 21/115 (18%)
Query: 212 DLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
D V GGG ++L+ G PG GK+TL+ + A LA +RV+ V G+ +
Sbjct: 113 DRVLGGGLVPGSAVLLGGHPGAGKSTLLLQTACKLAQQ--RRVLYVT------GEESLSQ 164
Query: 267 SGIGRARRMQVPNVNMQH------SVMIEAVENHMPETIIIDEI-GTELEALAAS 314
+ RA R+Q+P +Q ++ E PE +IID I T LE +A++
Sbjct: 165 VAM-RAHRLQLPTQGLQMLAETSIETILGVAERERPEVLIIDSIQTTHLEDIASA 218
>gi|58336684|ref|YP_193269.1| DNA repair protein RadA [Lactobacillus acidophilus NCFM]
gi|227903245|ref|ZP_04021050.1| DNA repair protein RadA [Lactobacillus acidophilus ATCC 4796]
gi|58254001|gb|AAV42238.1| DNA repair protein [Lactobacillus acidophilus NCFM]
gi|227869050|gb|EEJ76471.1| DNA repair protein RadA [Lactobacillus acidophilus ATCC 4796]
Length = 458
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIV---DTSNEIGGDGDVPHSGIGRAR 273
G +L+ G PG+GK+TL+ +I LA+ H +V+ V +++N+I D GIG++
Sbjct: 93 GSLVLIGGDPGIGKSTLMLQIMSDLAEKH--KVLYVSGEESANQIKLRAD--RLGIGQSN 148
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
+ P +M H + E + + P+ ++ID I T
Sbjct: 149 MLLYPESDM-HDIR-EQINDVKPDFVVIDSIQT 179
>gi|294657213|ref|XP_459513.2| DEHA2E04444p [Debaryomyces hansenii CBS767]
gi|199432521|emb|CAG87739.2| DEHA2E04444p [Debaryomyces hansenii CBS767]
Length = 832
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 203 VAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-----E 257
++G E + L GG S+ G G GK+ L+R I + L H K V V S
Sbjct: 272 LSGEQEYVLQLATGGQSLFYTGSAGTGKSVLLRSIIKSLKQKHEKGHVAVTASTGLAACN 331
Query: 258 IGGDGDVPHSGIG 270
IGG +G+G
Sbjct: 332 IGGITLHSFAGVG 344
>gi|170757820|ref|YP_001783151.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum B1 str. Okra]
gi|429246823|ref|ZP_19210119.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum CFSAN001628]
gi|169123032|gb|ACA46868.1| putative negative regulator of genetic competence MecB/ClpC
[Clostridium botulinum B1 str. Okra]
gi|428756157|gb|EKX78733.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum CFSAN001628]
Length = 811
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 48/213 (22%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHM------KRVVIVDTSNEIGGD 261
EI+C + + IG PGVGKT + +A+ + D ++ KRVV +D ++ I G
Sbjct: 196 EILCRRTKNNPCL--IGEPGVGKTAIAEGLAQNIIDGNIPEILKNKRVVTLDLTSMIAG- 252
Query: 262 GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGV 321
+ G R ++ +E V + + IDEI T + A
Sbjct: 253 --AKYRGEFEDRLKKI----------MEEVRSSKDTILFIDEIHTIVGA----------- 289
Query: 322 QLVGTAHGMTID--NIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERK------GP 373
G A G ID NI+K + + I + TL +E +K + + LER+ G
Sbjct: 290 ---GAAEG-AIDAANILKPALARGEIQCIGATTL--DEYRKYIEKDSALERRFQPINVGE 343
Query: 374 PTFTCAVEMIS--RTECRVHHRLDATVDAILAG 404
PT +E++ R + HHR+ T DAI A
Sbjct: 344 PTKEETIEILKGLRDKYEAHHRVKFTDDAIYAA 376
>gi|418738278|ref|ZP_13294674.1| DNA repair protein RadA [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410746452|gb|EKQ99359.1| DNA repair protein RadA [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 459
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 22/121 (18%)
Query: 212 DLVEGGGSI-----LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266
DLV GGG + L+ G PGVGK+TL+ E++R L + K + I S E + P
Sbjct: 81 DLVLGGGLVPGSLTLIGGEPGVGKSTLVLEVSRYLTQANKKVLYI---SGE-----ESPS 132
Query: 267 SGIGRARRMQVPNVNM-----QHSVMIEA-VENHMPETIIIDEIGT-ELEAL--AASTIA 317
RA RM + N+ ++ I A +E P + +D I T EAL A T+A
Sbjct: 133 QIRMRAERMGFHSSNLLLTSETYAENISAMIEGERPTAVFVDSIQTIAREALPNQAGTVA 192
Query: 318 Q 318
Q
Sbjct: 193 Q 193
>gi|422016476|ref|ZP_16363059.1| DNA-binding ATP-dependent protease La [Providencia burhodogranariea
DSM 19968]
gi|414092675|gb|EKT54348.1| DNA-binding ATP-dependent protease La [Providencia burhodogranariea
DSM 19968]
Length = 808
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++ K +K + K + D + G+DR ++ R ++ + + RV +
Sbjct: 321 DWMVQVPWNKRSKVKKDLVKAQEILDTDHYGLDR-------VKERILEYLAVQSRVSKI- 372
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
I+C ++GPPGVGKT+L + IA+
Sbjct: 373 --KGPILC----------LVGPPGVGKTSLGQSIAK 396
>gi|153940994|ref|YP_001392864.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum F str. Langeland]
gi|384463825|ref|YP_005676420.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum F str. 230613]
gi|152936890|gb|ABS42388.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum F str. Langeland]
gi|295320842|gb|ADG01220.1| negative regulator of genetic competence MecB/ClpC [Clostridium
botulinum F str. 230613]
Length = 811
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 48/213 (22%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHM------KRVVIVDTSNEIGGD 261
EI+C + + IG PGVGKT + +A+ + D ++ KRVV +D ++ I G
Sbjct: 196 EILCRRTKNNPCL--IGEPGVGKTAIAEGLAQNIIDGNIPEILKNKRVVTLDLTSMIAG- 252
Query: 262 GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGV 321
+ G R ++ +E V + + IDEI T + A
Sbjct: 253 --AKYRGEFEDRLKKI----------MEEVRSSKDTILFIDEIHTIVGA----------- 289
Query: 322 QLVGTAHGMTID--NIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERK------GP 373
G A G ID NI+K + + I + TL +E +K + + LER+ G
Sbjct: 290 ---GAAEG-AIDAANILKPALARGEIQCIGATTL--DEYRKYIEKDSALERRFQPINVGE 343
Query: 374 PTFTCAVEMIS--RTECRVHHRLDATVDAILAG 404
PT +E++ R + HHR+ T DAI A
Sbjct: 344 PTKEETIEILKGLRDKYEAHHRVKFTDDAIYAA 376
>gi|22536347|ref|NP_687198.1| competence protein CglA [Streptococcus agalactiae 2603V/R]
gi|76787380|ref|YP_328894.1| competence protein ComGA [Streptococcus agalactiae A909]
gi|76798818|ref|ZP_00781030.1| competence protein CglA [Streptococcus agalactiae 18RS21]
gi|77410958|ref|ZP_00787314.1| competence protein CglA [Streptococcus agalactiae CJB111]
gi|406708696|ref|YP_006763422.1| competence protein CglA [Streptococcus agalactiae GD201008-001]
gi|424050183|ref|ZP_17787731.1| competence protein ComGA [Streptococcus agalactiae ZQ0910]
gi|22533172|gb|AAM99070.1|AE014199_6 competence protein CglA [Streptococcus agalactiae 2603V/R]
gi|76562437|gb|ABA45021.1| competence protein ComGA [Streptococcus agalactiae A909]
gi|76585825|gb|EAO62371.1| competence protein CglA [Streptococcus agalactiae 18RS21]
gi|77163013|gb|EAO73968.1| competence protein CglA [Streptococcus agalactiae CJB111]
gi|389648258|gb|EIM69768.1| competence protein ComGA [Streptococcus agalactiae ZQ0910]
gi|406649581|gb|AFS44982.1| competence protein CglA [Streptococcus agalactiae GD201008-001]
Length = 323
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
G L GP G GKTTL+ ++A + + K+++ ++ EI D + ++Q+
Sbjct: 133 GLYLFSGPVGSGKTTLMYQLASEVFKN--KQIITIEDPVEIKND---------KMLQLQL 181
Query: 278 -PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTI 332
++ M + +I+ H P+ +II EI + A A + GV + T H +I
Sbjct: 182 NEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFSTIHAKSI 237
>gi|325928016|ref|ZP_08189233.1| flagellar GTP-binding protein [Xanthomonas perforans 91-118]
gi|325541612|gb|EGD13137.1| flagellar GTP-binding protein [Xanthomonas perforans 91-118]
Length = 335
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-VVIVDTSNEIGGDGDVPHSGI 269
D +E GG I ++GP G GKTT I ++A+ A H R V +V T + G + HS
Sbjct: 120 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHS-Y 178
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE--IGTELEALAASTIAQRGVQLV--- 324
GR + V + S++ + ++ID +G ALAA R Q V
Sbjct: 179 GRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAAQQVTSL 238
Query: 325 ----GTAHGMTIDNIVK 337
AH +D +V+
Sbjct: 239 LVLPANAHFSDLDEVVR 255
>gi|290960240|ref|YP_003491422.1| Ftsk/SpoIIIE family protein [Streptomyces scabiei 87.22]
gi|260649766|emb|CBG72882.1| Ftsk/SpoIIIE family protein [Streptomyces scabiei 87.22]
Length = 1338
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 210 ICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGD----GDVP 265
+ DL+ GG VIG P GKTTL+R +A LA H V V + +GG +P
Sbjct: 834 VLDLMVAGGHAAVIGGPQSGKTTLLRTLALSLAATHTPAEVAVYGLDLVGGGLSALSGLP 893
Query: 266 HSG--IGRARR 274
H G GRA R
Sbjct: 894 HVGGIAGRADR 904
>gi|255547217|ref|XP_002514666.1| chaperone clpb, putative [Ricinus communis]
gi|223546270|gb|EEF47772.1| chaperone clpb, putative [Ricinus communis]
Length = 912
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 186 RNRKMQVIGLTCRVGRAVAGSAEIICDLVEG--------------GGSILVIGPPGVGKT 231
+N K ++IGL R+ + V G + + + E GS L +GP GVGKT
Sbjct: 554 QNEKERLIGLAERLHQRVVGQDQAVSAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKT 613
Query: 232 TLIREIARMLADDHMKRVVI 251
L + +A L DD + V I
Sbjct: 614 ELAKALAEQLFDDENQMVRI 633
>gi|121591792|ref|ZP_01678988.1| ATP-dependent protease La [Vibrio cholerae 2740-80]
gi|121546345|gb|EAX56612.1| ATP-dependent protease La [Vibrio cholerae 2740-80]
Length = 449
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+++ K +K +SK + + + G++R ++ R ++ + + R+ +
Sbjct: 271 DWMVNVPWTKRSKVKKDLSKAEEILNADHYGLER-------VKERILEYLAVQSRINKL- 322
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 323 --KGPILC----------LVGPPGVGKTSLGRSIA 345
>gi|290474661|ref|YP_003467541.1| DNA-binding ATP-dependent protease La [Xenorhabdus bovienii
SS-2004]
gi|289173974|emb|CBJ80761.1| DNA-binding ATP-dependent protease La; heat shock K-protein
[Xenorhabdus bovienii SS-2004]
Length = 784
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++ V +K + K + D + G++R ++ R ++ + + RV +
Sbjct: 296 DWMVQVPWVARSKVKKDLVKAQEVLDIDHYGLER-------VKERILEYLAVQSRVSKI- 347
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
I+C ++GPPGVGKT+L R IAR
Sbjct: 348 --KGPILC----------LVGPPGVGKTSLGRSIAR 371
>gi|261210561|ref|ZP_05924854.1| ATP-dependent protease La Type I [Vibrio sp. RC341]
gi|260840346|gb|EEX66917.1| ATP-dependent protease La Type I [Vibrio sp. RC341]
Length = 789
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+I+ K +K +SK + + + G++R ++ R ++ + + R+ +
Sbjct: 295 DWMINVPWTKRSKVKKDLSKAEEILNADHYGLER-------VKERILEYLAVQSRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>gi|255038517|ref|YP_003089138.1| DNA repair protein RadA [Dyadobacter fermentans DSM 18053]
gi|254951273|gb|ACT95973.1| DNA repair protein RadA [Dyadobacter fermentans DSM 18053]
Length = 457
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 33/181 (18%)
Query: 135 KPLARFPS-GDW-VISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQV 192
K + R PS G+W +++++ +D K A+S + N + RS+ I + + ++
Sbjct: 19 KWVGRCPSCGEWNTFVQEVIEKDDKKTAVS----WKSVNLANKPRSIAEI--VYENEPRI 72
Query: 193 IGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252
+ R + G + G +L+ G PG+GK+TL+ +IA L++ KRV+ V
Sbjct: 73 RTFDEELNRVLGGG-------IVPGSLVLIGGEPGIGKSTLMLQIALTLSN---KRVLYV 122
Query: 253 DTSNEIGGDGDVPHSGIG-RARRMQVPNVNM------QHSVMIEAVENHMPETIIIDEIG 305
G+ + I RA RM + N Q + +E+ PE +I+D I
Sbjct: 123 --------SGEESEAQIKMRAERMAAKSDNCFILTDTQTQNIFRQIEDFQPEILIVDSIQ 174
Query: 306 T 306
T
Sbjct: 175 T 175
>gi|339302445|ref|ZP_08651497.1| competence protein ComGA [Streptococcus agalactiae ATCC 13813]
gi|417004282|ref|ZP_11943015.1| competence protein ComGA [Streptococcus agalactiae FSL S3-026]
gi|319744114|gb|EFV96488.1| competence protein ComGA [Streptococcus agalactiae ATCC 13813]
gi|341578081|gb|EGS28478.1| competence protein ComGA [Streptococcus agalactiae FSL S3-026]
Length = 323
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
G L GP G GKTTL+ ++A + + K+++ ++ EI D + ++Q+
Sbjct: 133 GLYLFSGPVGSGKTTLMYQLASEVFKN--KQIITIEDPVEIKND---------KMLQLQL 181
Query: 278 -PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTI 332
++ M + +I+ H P+ +II EI + A A + GV + T H +I
Sbjct: 182 NEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFSTIHAKSI 237
>gi|260945813|ref|XP_002617204.1| hypothetical protein CLUG_02648 [Clavispora lusitaniae ATCC 42720]
gi|238849058|gb|EEQ38522.1| hypothetical protein CLUG_02648 [Clavispora lusitaniae ATCC 42720]
Length = 1214
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGI-GRARRMQVP 278
+ V+GPPG GKTTLI+ + + L T E+ G P + + G+ RR+
Sbjct: 103 VAVVGPPGTGKTTLIKSLVKKLTK---------STLTEVKG----PITVVSGKRRRLTFM 149
Query: 279 NVNMQHSVMIEAVENHMPETIIID-EIGTELEALAASTIAQRGVQLVGTAHGM 330
VN + M++A + +++D G E+E + IAQ HGM
Sbjct: 150 EVNNDLNSMVDAAKIADLVLLLVDGNFGLEMETMEFLNIAQH--------HGM 194
>gi|126733006|ref|ZP_01748765.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Sagittula
stellata E-37]
gi|126706535|gb|EBA05613.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Sagittula
stellata E-37]
Length = 870
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 135 KPLARFPSGDWVISEQIVKHEDLKHAISK-----VGDFSDDNRS---GIDRSLHRISAIR 186
K LA + D V+ E+ V+ + + + + G + R G++ +LHR +
Sbjct: 511 KQLAEAEASDDVMVEEAVRPDQIASVVERWTGIPAGKMLEGEREKLLGMEENLHRRVVGQ 570
Query: 187 NRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADD 244
N+ + + R RA AG + D GS L +GP GVGKT L + +A L DD
Sbjct: 571 NQAVTAVANAVR--RARAG----LNDENRPLGSFLFLGPTGVGKTELTKAVAEFLFDD 622
>gi|418519246|ref|ZP_13085348.1| flagellar biosynthesis regulator FlhF, partial [Xanthomonas
axonopodis pv. malvacearum str. GSPB1386]
gi|410700434|gb|EKQ58989.1| flagellar biosynthesis regulator FlhF, partial [Xanthomonas
axonopodis pv. malvacearum str. GSPB1386]
Length = 331
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-VVIVDTSNEIGGDGDVPHSGI 269
D +E GG I ++GP G GKTT I ++A+ A H R V +V T + G + HS
Sbjct: 116 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHS-Y 174
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE--IGTELEALAASTIAQRGVQLV--- 324
GR + V + S++ + ++ID +G ALAA R Q V
Sbjct: 175 GRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAAQQVTSL 234
Query: 325 ----GTAHGMTIDNIVK 337
AH +D +V+
Sbjct: 235 LVLPANAHFSDLDEVVR 251
>gi|239631877|ref|ZP_04674908.1| type II secretory pathway/competence [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|417980229|ref|ZP_12620910.1| ComGA family late competence protein [Lactobacillus casei 12A]
gi|239526342|gb|EEQ65343.1| type II secretory pathway/competence [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|410525456|gb|EKQ00358.1| ComGA family late competence protein [Lactobacillus casei 12A]
Length = 288
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
G + + GP G GKTTL+ ++A LA+ M V+ ++ EI + P ++QV
Sbjct: 128 GMLTLAGPTGSGKTTLLYQLATRLAESRM--VLSIEDPVEI----NQPQFS-----QLQV 176
Query: 278 -PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHG 329
P +M + +++A H P+ ++I EI A +A A G ++ T H
Sbjct: 177 NPEADMTYPQLLKAALRHRPDVLLIGEIRDRQTAQSACEAAISGHIVLATVHA 229
>gi|170027981|ref|XP_001841875.1| replication factor C subunit 2 [Culex quinquefasciatus]
gi|167868345|gb|EDS31728.1| replication factor C subunit 2 [Culex quinquefasciatus]
Length = 344
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNEIGGD 261
+I++ GPPGVGKTT I +AR+L ++ + V+ ++ SNE G D
Sbjct: 63 NIIIAGPPGVGKTTTILCLARILLGENFREAVLELNASNERGID 106
>gi|418523535|ref|ZP_13089545.1| flagellar biosynthesis regulator FlhF, partial [Xanthomonas
axonopodis pv. malvacearum str. GSPB2388]
gi|410699790|gb|EKQ58391.1| flagellar biosynthesis regulator FlhF, partial [Xanthomonas
axonopodis pv. malvacearum str. GSPB2388]
Length = 330
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-VVIVDTSNEIGGDGDVPHSGI 269
D +E GG I ++GP G GKTT I ++A+ A H R V +V T + G + HS
Sbjct: 115 VDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHS-Y 173
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE--IGTELEALAASTIAQRGVQLV--- 324
GR + V + S++ + ++ID +G ALAA R Q V
Sbjct: 174 GRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAAQQVTSL 233
Query: 325 ----GTAHGMTIDNIVK 337
AH +D +V+
Sbjct: 234 LVLPANAHFSDLDEVVR 250
>gi|410593867|ref|YP_006950594.1| Type II/IV secretion system protein [Streptococcus agalactiae
SA20-06]
gi|410517506|gb|AFV71650.1| Type II/IV secretion system protein [Streptococcus agalactiae
SA20-06]
Length = 323
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
G L GP G GKTTL+ ++A + + K+++ ++ EI D + ++Q+
Sbjct: 133 GLYLFSGPVGSGKTTLMYQLASEVFKN--KQIITIEDPVEIKND---------KMLQLQL 181
Query: 278 -PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTI 332
++ M + +I+ H P+ +II EI + A A + GV + T H +I
Sbjct: 182 NEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFSTIHAKSI 237
>gi|336124546|ref|YP_004566594.1| ATP-dependent endopeptidase Lon [Vibrio anguillarum 775]
gi|335342269|gb|AEH33552.1| ATP-dependent endopeptidase Lon [Vibrio anguillarum 775]
Length = 783
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+++ K +K ++K + + + G+DR ++ R ++ + + R+ +
Sbjct: 295 DWMVNVPWAKRSKVKKDLAKAEEILNADHYGLDR-------VKERILEYLAVQSRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>gi|291530816|emb|CBK96401.1| Uncharacterized protein conserved in bacteria [Eubacterium siraeum
70/3]
Length = 303
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGG--DGDVPHSGIGRARRMQV 277
+L++G GKTT++R++ R + M RV ++D EI +G P +G V
Sbjct: 150 LLIVGRALSGKTTILRDLCRCIGG--MFRVSLIDERQEIAAVYNGK-PCLDVGLM--TDV 204
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
+ + +I AV P+ I+ DE+G + +++ + G L+ TAH +I+ +
Sbjct: 205 FSGYGKSDGIIRAVRCMSPDYIVTDELGADAKSIRQAV--NSGSGLIMTAHADSIEEAYR 262
Query: 338 NPSLQILV--GGIESVTL 353
N ++ ++ G I+ + L
Sbjct: 263 NEGIRTVIDSGAIQHIAL 280
>gi|269965578|ref|ZP_06179692.1| ATP-dependent protease La [Vibrio alginolyticus 40B]
gi|269829803|gb|EEZ84038.1| ATP-dependent protease La [Vibrio alginolyticus 40B]
Length = 783
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +K ++K + +++ G++R ++ R ++ + + R+ +
Sbjct: 295 DWMVSVPWAKRSKVKKNLAKAEEVLNEDHYGLER-------VKERILEYLAVQNRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>gi|21672930|ref|NP_660995.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Chlorobium
tepidum TLS]
gi|54035862|sp|Q8KG79.1|CLPB1_CHLTE RecName: Full=Probable chaperone protein ClpB 1
gi|21645986|gb|AAM71337.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Chlorobium
tepidum TLS]
Length = 438
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 31/128 (24%)
Query: 134 RKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSD--DNRSGIDRSLHRISAIRNRKMQ 191
RK AR SGD ++ E+I GD +D +GI S +++ + +
Sbjct: 87 RKIEARQASGDLIMKEEI-----------DAGDIADIVSRWTGIPVS----KMLQSERQK 131
Query: 192 VIGLTCRVGRAVAGSAEII---CDLVEGG-----------GSILVIGPPGVGKTTLIREI 237
++G+ + R V G E + D V+ GS + +GP GVGKT L R +
Sbjct: 132 LLGIESELHRRVVGQDEAVRAVSDAVKRSRAGMGDEKRPIGSFIFLGPTGVGKTELARTL 191
Query: 238 ARMLADDH 245
A L DD
Sbjct: 192 AEYLFDDE 199
>gi|418007630|ref|ZP_12647509.1| ComGA family late competence protein [Lactobacillus casei UW4]
gi|410548545|gb|EKQ22742.1| ComGA family late competence protein [Lactobacillus casei UW4]
Length = 288
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
G + + GP G GKTTL+ ++A LA+ M V+ ++ EI + ++QV
Sbjct: 128 GMLTLAGPTGSGKTTLLYQLATRLAESRM--VLSIEDPVEINQPQFI---------QLQV 176
Query: 278 -PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHG 329
P +M + +++A H P+ ++I EI A +A A G ++ T H
Sbjct: 177 NPEADMTYPQLLKAALRHRPDVLLIGEIRDRQTAQSACEAAISGHIVLATVHA 229
>gi|91228615|ref|ZP_01262533.1| ATP-dependent protease LA [Vibrio alginolyticus 12G01]
gi|91187847|gb|EAS74161.1| ATP-dependent protease LA [Vibrio alginolyticus 12G01]
Length = 783
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +K ++K + +++ G++R ++ R ++ + + R+ +
Sbjct: 295 DWMVSVPWAKRSKVKKNLAKAEEVLNEDHYGLER-------VKERILEYLAVQNRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>gi|254282197|ref|ZP_04957165.1| ATP-dependent protease La [gamma proteobacterium NOR51-B]
gi|219678400|gb|EED34749.1| ATP-dependent protease La [gamma proteobacterium NOR51-B]
Length = 804
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 20/96 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
+W++S K ++H + + D++ G+D +++R ++ + + RV R V
Sbjct: 294 EWMVSVPWQKRSKVRHDLKRAAKVLDEDHFGLDE-------VKDRILEYLAVQKRV-RKV 345
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
G ++C ++GPPGVGKT+L +AR
Sbjct: 346 KGP--VLC----------LVGPPGVGKTSLGESVAR 369
>gi|194367619|ref|YP_002030229.1| ATPase [Stenotrophomonas maltophilia R551-3]
gi|194350423|gb|ACF53546.1| ATPase associated with various cellular activities AAA_3
[Stenotrophomonas maltophilia R551-3]
Length = 328
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 13/72 (18%)
Query: 177 RSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEG---GGSILVIGPPGVGKTTL 233
R + R+ AIR+ +G A G AE++ ++ GG +L+ G PG+GKT L
Sbjct: 14 RLIERVDAIRDA----------IGHAFIGQAEVLDQILVALLAGGHVLIEGVPGLGKTLL 63
Query: 234 IREIARMLADDH 245
+R +A+ L D+
Sbjct: 64 VRALAQALELDY 75
>gi|186477708|ref|YP_001859178.1| flagellar biosynthesis regulator FlhF [Burkholderia phymatum
STM815]
gi|184194167|gb|ACC72132.1| GTP-binding signal recognition particle SRP54 G- domain
[Burkholderia phymatum STM815]
Length = 644
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 20/177 (11%)
Query: 213 LVEGGGSILVIGPPGVGKTTLIREI-ARMLADDHMKRVVIVDT-SNEIGGDGDVPHSGIG 270
L+E GG ++GP GVGKTT ++ AR + +V ++ T S IGG + G
Sbjct: 408 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQL--RIFG 465
Query: 271 RARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG-TELEALAASTIA---------QRG 320
+ + V V + + E ++ID IG ++ + L + IA QR
Sbjct: 466 KILGVSVHAVKDSADLTLALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLCRAGQPVQRL 525
Query: 321 VQLVGTAHGMTIDNIVK----NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGP 373
+ L T+HG T++ +V+ P Q L G I +T DE V T++ K P
Sbjct: 526 LLLNATSHGDTLNEVVQAYQNAPDQQPLAGCI--LTKLDEATNLGSVLDTVIRYKLP 580
>gi|163857852|ref|YP_001632150.1| ABC transporter ATP-binding protein [Bordetella petrii DSM 12804]
gi|163261580|emb|CAP43882.1| probable ATP-binding component of ABC transporter [Bordetella
petrii]
Length = 361
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHM 246
M+ + + CR R GS E++ D+ +E G ++GP G GK+TL+R IA + H
Sbjct: 1 MKKVSVECRNIRLSYGSTEVLKDVNIQIEPGEFFALLGPSGSGKSTLLRLIAGF--NRHS 58
Query: 247 KRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
++VD + + G+ P++ + +V VE M I ++G
Sbjct: 59 HGQLLVDGKDISATPPWGRNIGMVFQNYALWPHMTVWDNVAFGLVERRMGRAEIRAKVGA 118
Query: 307 ELEALAASTIAQR 319
LE + S A+R
Sbjct: 119 ALELVGLSQYARR 131
>gi|319774918|ref|YP_004134187.1| type II secretion system protein E [Thermovibrio ammonificans HB-1]
gi|317115266|gb|ADU97755.1| type II secretion system protein E [Thermovibrio ammonificans HB-1]
Length = 404
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 23/114 (20%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVV---------IVDTSN------EIGGDG 262
G ++V GP G GK+T + I R L++D RVV + D N E+G D
Sbjct: 173 GLVIVTGPTGSGKSTTLAGIMRYLSEDDRSRVVVTIEKPIEYVFDNKNAFFIQREVGRDT 232
Query: 263 DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI 316
D SG+ A R QH +I E+ PE I + +E L +T+
Sbjct: 233 DSFISGVHNALR--------QHPDVIYIGESRTPEEIKTALMASETGHLTFTTL 278
>gi|302383541|ref|YP_003819364.1| ATPase AAA [Brevundimonas subvibrioides ATCC 15264]
gi|302194169|gb|ADL01741.1| ATPase associated with various cellular activities AAA_3
[Brevundimonas subvibrioides ATCC 15264]
Length = 332
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 183 SAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEG---GGSILVIGPPGVGKTTLIREIAR 239
S I R ++ L +G+A+ G E++ L+ G GG L+ G PG+GKT L+R + +
Sbjct: 7 SEIDARLGELSKLKAAIGQAIVGQTEVVEQLLIGLLAGGHCLIEGVPGLGKTLLVRTLGQ 66
Query: 240 MLA 242
LA
Sbjct: 67 ALA 69
>gi|110597416|ref|ZP_01385703.1| DNA repair protein RadA [Chlorobium ferrooxidans DSM 13031]
gi|110340960|gb|EAT59431.1| DNA repair protein RadA [Chlorobium ferrooxidans DSM 13031]
Length = 455
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 27/119 (22%)
Query: 201 RAVAGSAEIICDLVEGGG-----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R + G E+ D V GGG ++LV G PG+GK+TL+ ++A LA + + ++
Sbjct: 69 RTLTGIGEL--DRVLGGGLMQASAVLVGGEPGIGKSTLMLQLAPRLAPAKVLYISGEESP 126
Query: 256 NEIGGDGDVPHSGIGRARRMQ--------VPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
N+I RA R+ +P VN++ ++E +E P +IID I T
Sbjct: 127 NQIR----------ERAERLSIRAENLWLIPEVNLER--ILEIIEREKPALVIIDSIQT 173
>gi|428317734|ref|YP_007115616.1| putative signal transduction protein with Nacht domain
[Oscillatoria nigro-viridis PCC 7112]
gi|428241414|gb|AFZ07200.1| putative signal transduction protein with Nacht domain
[Oscillatoria nigro-viridis PCC 7112]
Length = 1512
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVI 251
G + +IG PG GKTTL+R+IA +AD+ ++ +VI
Sbjct: 315 GKRLGIIGEPGAGKTTLLRQIANWVADEILEAIVI 349
>gi|4590326|gb|AAD26530.1|AF083327_1 101 kDa heat shock protein [Zea mays]
Length = 582
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 186 RNRKMQVIGLTCRVGRAVAGSAEIICDLVEG--------------GGSILVIGPPGVGKT 231
+N K +++GL R+ + V G E + + E GS L +GP GVGKT
Sbjct: 225 QNDKERLVGLADRLHQRVVGQTEAVSAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKT 284
Query: 232 TLIREIARMLADD 244
L + +A L DD
Sbjct: 285 ELAKALAEQLFDD 297
>gi|344996166|ref|YP_004798509.1| AAA ATPase [Caldicellulosiruptor lactoaceticus 6A]
gi|343964385|gb|AEM73532.1| LOW QUALITY PROTEIN: AAA ATPase central domain protein
[Caldicellulosiruptor lactoaceticus 6A]
Length = 864
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 123 GDLIEV--VMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK-----VGDFSDDNRSGI 175
G LIE+ +D R+ L + P ++ E+ V E++ +SK V + R I
Sbjct: 506 GKLIELQKALDRKRQELEKIPPEKRLLKEE-VTEEEIAKIVSKWTGIPVAKLVETERQKI 564
Query: 176 ---DRSLHRISAIRNRKMQVIGLTCR-VGRAVAGSAEIICDLVEGGGSILVIGPPGVGKT 231
D+ LHR ++ ++ + C + RA AG I D + G+ L +GP GVGKT
Sbjct: 565 LELDKILHRRVVGQDEAIEAV---CNAIMRARAG----IKDPRKPIGTFLFLGPTGVGKT 617
Query: 232 TLIREIARMLAD 243
L R +A L D
Sbjct: 618 ELARALAEALFD 629
>gi|421532800|ref|ZP_15979146.1| competence protein ComGA [Streptococcus agalactiae STIR-CD-17]
gi|403641900|gb|EJZ02807.1| competence protein ComGA [Streptococcus agalactiae STIR-CD-17]
Length = 323
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
G L GP G GKTTL+ ++A + + K+++ ++ EI D + ++Q+
Sbjct: 133 GLYLFSGPVGSGKTTLMYQLASEVFKN--KQIITIEDPVEIKND---------KMLQLQL 181
Query: 278 -PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTI 332
++ M + +I+ H P+ +II EI + A A + GV + T H +I
Sbjct: 182 NEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFSTIHAKSI 237
>gi|395646216|ref|ZP_10434076.1| PilT protein domain protein [Methanofollis liminatans DSM 4140]
gi|395442956|gb|EJG07713.1| PilT protein domain protein [Methanofollis liminatans DSM 4140]
Length = 649
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 25/125 (20%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L+ GPPG GK+TL + IA L++ IV T R +QVP+
Sbjct: 263 VLIAGPPGAGKSTLAQSIATFLSESGF----IVKTMEA--------------PRDLQVPD 304
Query: 280 VNMQHSVMIEAVENHM-------PETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTI 332
Q++ + ++ N P+ +I DE+ + + + GV ++G H M +
Sbjct: 305 NITQYTALEGSMTNTAEVLLLVRPDAVIFDELRKSEDFRVFADMRLAGVGMIGVVHAMQV 364
Query: 333 DNIVK 337
+ V+
Sbjct: 365 QDAVQ 369
>gi|209879988|ref|XP_002141434.1| chaperone clpB family protein [Cryptosporidium muris RN66]
gi|209557040|gb|EEA07085.1| chaperone clpB family protein [Cryptosporidium muris RN66]
Length = 1270
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHM------KRVVIVDTSNEIGG 260
EG S+++IGPPG GKTTL +A+ + D + +V VD SN + G
Sbjct: 471 EGKSSVMLIGPPGTGKTTLAEALAQRIIDGTVTSFLLGYKVFSVDISNILSG 522
>gi|385840145|ref|YP_005863469.1| ComG operon protein 1 [Lactobacillus salivarius CECT 5713]
gi|300214266|gb|ADJ78682.1| ComG operon protein 1 [Lactobacillus salivarius CECT 5713]
Length = 327
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
G I+ GP G GKTT + +AR LA++ K V+ ++ EI + ++QV
Sbjct: 133 GLIVFSGPMGSGKTTTMYNLARKLANE--KHVMSIEDPIEIYEPNFL---------QLQV 181
Query: 278 PN-VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336
N M +S +++ H P+ +I EI + A A A G ++ T H + +
Sbjct: 182 NNKAQMSYSELLKVALRHHPDVFLIGEIRDNMTAKVAINAALSGHLILTTVHARNVYGVY 241
Query: 337 K 337
+
Sbjct: 242 Q 242
>gi|312793685|ref|YP_004026608.1| ATP-dependent chaperone clpb [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312180825|gb|ADQ40995.1| ATP-dependent chaperone ClpB [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 864
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 123 GDLIEV--VMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK-----VGDFSDDNRSGI 175
G LIE+ +D R+ L + P ++ E+ V E++ +SK V + R I
Sbjct: 506 GKLIELQKALDRKRQELEKIPPEKRLLKEE-VTEEEIAKIVSKWTGIPVAKLVETERQKI 564
Query: 176 ---DRSLHRISAIRNRKMQVIGLTCR-VGRAVAGSAEIICDLVEGGGSILVIGPPGVGKT 231
D+ LHR ++ ++ + C + RA AG I D + G+ L +GP GVGKT
Sbjct: 565 LELDKILHRRVVGQDEAIEAV---CNAIMRARAG----IKDPRKPIGTFLFLGPTGVGKT 617
Query: 232 TLIREIARMLAD 243
L R +A L D
Sbjct: 618 ELARALAEALFD 629
>gi|11499542|ref|NP_070784.1| DNA helicase [Archaeoglobus fulgidus DSM 4304]
gi|2648582|gb|AAB89295.1| DNA helicase, putative [Archaeoglobus fulgidus DSM 4304]
Length = 453
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 211 CDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN 256
C L EG +LV+GPPG GKTT I E AR L+++ +RV + +N
Sbjct: 62 CSLDEGE-ILLVVGPPGSGKTTFIAEAARKLSEE--ERVWVTSNTN 104
>gi|385207603|ref|ZP_10034471.1| flagellar biosynthetic protein FlhF [Burkholderia sp. Ch1-1]
gi|385179941|gb|EIF29217.1| flagellar biosynthetic protein FlhF [Burkholderia sp. Ch1-1]
Length = 650
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 22/178 (12%)
Query: 213 LVEGGGSILVIGPPGVGKTTLIREI-ARMLADDHMKRVVIVDT-SNEIGGDGDVPHSGI- 269
L+E GG ++GP GVGKTT ++ AR + +V ++ T S IGG + G
Sbjct: 414 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKI 473
Query: 270 ----------GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
G ++ + + +H V+I+ + + ++ D+I A QR
Sbjct: 474 LGVSVHAVKDGADLQLALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLCH---AGQPVQR 530
Query: 320 GVQLVGTAHGMTIDNIV----KNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGP 373
+ L T+HG T++ +V + P Q L G I +T DE V T++ K P
Sbjct: 531 LLLLNATSHGDTLNEVVQAYQRAPDQQPLAGCI--LTKLDEATNLGGVLDTVIRYKLP 586
>gi|157112624|ref|XP_001657594.1| replication factor C, 37kD-subunit, putative [Aedes aegypti]
Length = 147
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNEIGGD 261
+I++ GPPGVGKTT I +AR+L ++ + V+ ++ SNE G D
Sbjct: 62 NIIIAGPPGVGKTTTILCLARILLGENFREAVLELNASNERGID 105
>gi|91785645|ref|YP_560851.1| flagellar biosynthesis regulator FlhF [Burkholderia xenovorans
LB400]
gi|91689599|gb|ABE32799.1| flagellar biosynthesis protein, flhF [Burkholderia xenovorans
LB400]
Length = 657
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 22/178 (12%)
Query: 213 LVEGGGSILVIGPPGVGKTTLIREI-ARMLADDHMKRVVIVDT-SNEIGGDGDVPHSGI- 269
L+E GG ++GP GVGKTT ++ AR + +V ++ T S IGG + G
Sbjct: 421 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKI 480
Query: 270 ----------GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQR 319
G ++ + + +H V+I+ + + ++ D+I A QR
Sbjct: 481 LGVSVHAVKDGADLQLALSELRNKHIVLIDTIGMSQRDRLVSDQIAMLCH---AGQPVQR 537
Query: 320 GVQLVGTAHGMTIDNIV----KNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGP 373
+ L T+HG T++ +V + P Q L G I +T DE V T++ K P
Sbjct: 538 LLLLNATSHGDTLNEVVQAYQRAPDQQPLAGCI--LTKLDEATNLGGVLDTVIRYKLP 593
>gi|396082503|gb|AFN84112.1| ATP-dependent chaperone ClpB [Encephalitozoon romaleae SJ-2008]
Length = 851
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 33/171 (19%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
G+ L++GP GVGKT L + +A L DD K ++++D S+ G + + IG +
Sbjct: 580 GAFLLLGPTGVGKTELAKAVAMELFDDE-KNMLVLDMSD-YGNEMSITKL-IGASAGYVG 636
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQL-----VGTAHGMTI 332
N + + E ++N I++DE+ LA T+ QL V G +
Sbjct: 637 YN---EGGALTEPIKNRPYNVILLDEVD-----LAHQTVLNVLYQLLDEGRVTDGKGTVV 688
Query: 333 DNIVKNPSLQILVGGIESVTLGDE---------EAKKRKVQKTILERKGPP 374
D +N L I + LG E E K+++++ +L + GPP
Sbjct: 689 D--FRNCVL------IMTSNLGQEIMMRSPELDENDKKEIERLVLNKFGPP 731
>gi|73671138|ref|YP_307153.1| hypothetical protein Mbar_A3710 [Methanosarcina barkeri str.
Fusaro]
gi|72398300|gb|AAZ72573.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
Length = 932
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 24/146 (16%)
Query: 206 SAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVP 265
+A ++ L++G S+LV G G GKT+L+ A +L R++ ++ +NE+ P
Sbjct: 580 AAGLLSFLMDGQASVLVAGEVGAGKTSLLS--AMLLEIPQKYRILTIEDTNEL------P 631
Query: 266 HSGIGRARRMQVPNVNMQHSVMIEAVENHMPET------------IIIDEI-GTELEALA 312
+ ++ +V ++ Q SV+ E PET +++ E+ G E++ L
Sbjct: 632 IEKL-QSLGWKVQGMSSQSSVLKSGAE-MSPETALRAALRLGNSALVLGEVRGEEVKVLY 689
Query: 313 -ASTIAQRGVQLVGTAHGMTIDNIVK 337
A + + G ++GT HG + +N+ +
Sbjct: 690 EAMQVGKAGNSVIGTIHGSSTENVYE 715
>gi|227891632|ref|ZP_04009437.1| competence protein ComGA [Lactobacillus salivarius ATCC 11741]
gi|417787947|ref|ZP_12435630.1| late competence protein ComGA, access of DNA to ComEA
[Lactobacillus salivarius NIAS840]
gi|418961039|ref|ZP_13512926.1| ComG operon protein 1 [Lactobacillus salivarius SMXD51]
gi|227866548|gb|EEJ73969.1| competence protein ComGA [Lactobacillus salivarius ATCC 11741]
gi|334308124|gb|EGL99110.1| late competence protein ComGA, access of DNA to ComEA
[Lactobacillus salivarius NIAS840]
gi|380344706|gb|EIA33052.1| ComG operon protein 1 [Lactobacillus salivarius SMXD51]
Length = 327
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
G I+ GP G GKTT + +AR LA++ K V+ ++ EI + ++QV
Sbjct: 133 GLIVFSGPMGSGKTTTMYNLARKLANE--KHVMSIEDPIEIYEPNFL---------QLQV 181
Query: 278 PN-VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336
N M +S +++ H P+ +I EI + A A A G ++ T H + +
Sbjct: 182 NNKAQMSYSELLKVALRHHPDVFLIGEIRDNMTAKVAINAALSGHLILTTVHARNVYGVY 241
Query: 337 K 337
+
Sbjct: 242 Q 242
>gi|89885742|ref|YP_515940.1| AAA ATPase, central region [Rhodoferax ferrireducens T118]
gi|89347740|gb|ABD71942.1| AAA ATPase, central region [Rhodoferax ferrireducens T118]
Length = 688
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 63/156 (40%), Gaps = 36/156 (23%)
Query: 157 LKHAISKVGDFSDDNRSGIDRSLHRISAIRN--RKMQVIGLTCRVGR---AVAGSAEIIC 211
+K I+ V DF +R + R SAI N K+ I LT V R ++
Sbjct: 418 IKSTIATVEDFKQASR----EASRRASAIPNFGAKLSEIALTSEVRRETDSLVYRLRHWE 473
Query: 212 DLVEGGG----SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHS 267
++ E GG +L+ GPPG GKT L+R +AR L H+ V D
Sbjct: 474 EITERGGEPPSGVLLYGPPGTGKTNLVRALARELEYWHVFEVNASDV------------- 520
Query: 268 GIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303
+Q P + ++ NH P I IDE
Sbjct: 521 -------LQDPR---KFRDTMDLASNHRPAIIFIDE 546
>gi|315640072|ref|ZP_07895197.1| competence protein [Enterococcus italicus DSM 15952]
gi|315484200|gb|EFU74671.1| competence protein [Enterococcus italicus DSM 15952]
Length = 289
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 203 VAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDG 262
VA E++ D+ G L G G GKTTL+ +A+ L +V+ ++ EI
Sbjct: 121 VATYDELVYDVANQNGLFLFSGATGSGKTTLMYHLAKKLGG----QVITIEDPVEI---- 172
Query: 263 DVPHSGIGRARRMQVPN-VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGV 321
+ P ++Q + + + +I+ H P+ ++I EI L A AA+ A G
Sbjct: 173 EEP-----TFLQLQTNDTIGQTYDQLIKLSLRHRPDLLLIGEIRDSLTAHAATRAALTGH 227
Query: 322 QLVGTAHG 329
Q+ T H
Sbjct: 228 QVFATVHA 235
>gi|222529497|ref|YP_002573379.1| ATP-dependent chaperone ClpB [Caldicellulosiruptor bescii DSM 6725]
gi|222456344|gb|ACM60606.1| ATP-dependent chaperone ClpB [Caldicellulosiruptor bescii DSM 6725]
Length = 864
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 123 GDLIEV--VMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK-----VGDFSDDNRSGI 175
G LIE+ +D R+ L + P ++ E+ V E++ +SK V + R I
Sbjct: 506 GKLIELQKALDRKRQELEKIPPEKRLLKEE-VTEEEIAKIVSKWTGIPVAKLVETERQKI 564
Query: 176 ---DRSLHRISAIRNRKMQVIGLTCR-VGRAVAGSAEIICDLVEGGGSILVIGPPGVGKT 231
D+ LHR ++ ++ + C + RA AG I D + G+ L +GP GVGKT
Sbjct: 565 LELDKILHRRVVGQDEAIEAV---CNAIMRARAG----IKDPRKPIGTFLFLGPTGVGKT 617
Query: 232 TLIREIARMLAD 243
L R +A L D
Sbjct: 618 ELARALAEALFD 629
>gi|104774499|ref|YP_619479.1| DNA repair protein RadA [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116514611|ref|YP_813517.1| DNA repair protein RadA [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|418028733|ref|ZP_12667285.1| hypothetical protein LDBUL1632_00079 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|418035016|ref|ZP_12673478.1| hypothetical protein LDBUL1519_00178 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|103423580|emb|CAI98508.1| Putative ATP-dependent serine protease [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|116093926|gb|ABJ59079.1| DNA replication and repair protein RadA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|354691403|gb|EHE91333.1| hypothetical protein LDBUL1519_00178 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354691416|gb|EHE91344.1| hypothetical protein LDBUL1632_00079 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 458
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 55/93 (59%), Gaps = 9/93 (9%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIV---DTSNEIGGDGDVPHSGIGRAR 273
G +L+ G PG+GK+TL+ +I LA+ + +V+ V +++++I D G+G++
Sbjct: 93 GSLVLIGGDPGIGKSTLMLQIMSELAEKY--KVLYVSGEESASQIKLRAD--RLGLGQSP 148
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
+ P NM+H + + +++ P+ ++ID I T
Sbjct: 149 MLLYPESNMEH--IRDQIDDVKPDFVVIDSIQT 179
>gi|339320222|ref|YP_004679917.1| ATP-dependent chaperone ClpB [Candidatus Midichloria mitochondrii
IricVA]
gi|338226347|gb|AEI89231.1| ATP-dependent chaperone ClpB [Candidatus Midichloria mitochondrii
IricVA]
Length = 862
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 16/116 (13%)
Query: 192 VIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVI 251
V+ ++ V R+ AG + D + GS L +GP GVGKT L + +A+ L +D K +V
Sbjct: 575 VVAVSNAVRRSRAG----LSDQDKPIGSFLFLGPTGVGKTELAKALAQFLFNDK-KAIVR 629
Query: 252 VDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQH---SVMIEAVENHMPETIIIDEI 304
VD S + HS AR + P + H V+ EAV + I++DEI
Sbjct: 630 VDMSECME-----KHS---VARLIGAPPGYVGHEEGGVLTEAVRRRPYQIILLDEI 677
>gi|385816288|ref|YP_005852679.1| DNA repair protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|325126325|gb|ADY85655.1| DNA repair protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
Length = 458
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 55/93 (59%), Gaps = 9/93 (9%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIV---DTSNEIGGDGDVPHSGIGRAR 273
G +L+ G PG+GK+TL+ +I LA+ + +V+ V +++++I D G+G++
Sbjct: 93 GSLVLIGGDPGIGKSTLMLQIMSELAEKY--KVLYVSGEESASQIKLRAD--RLGLGQSP 148
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
+ P NM+H + + +++ P+ ++ID I T
Sbjct: 149 MLLYPESNMEH--IRDQIDDVKPDFVVIDSIQT 179
>gi|315122701|ref|YP_004063190.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313496103|gb|ADR52702.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 855
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
GS + +GP GVGKT L++ +AR+L DD ++ +D S + HS +R +
Sbjct: 599 GSFMFLGPTGVGKTELVKSLARLLFDDE-NSMIRIDMSEYME-----KHS---VSRLIGA 649
Query: 278 PNVNMQH---SVMIEAVENHMPETIIIDEI 304
P + + ++ EAV H + ++ DE+
Sbjct: 650 PPGYVGYEEGGILTEAVRRHPYQVVLFDEM 679
>gi|152981011|ref|YP_001351961.1| ABC transporter permease and ATPase [Janthinobacterium sp.
Marseille]
gi|151281088|gb|ABR89498.1| ABC-type transport system, permease and ATPase components
[Janthinobacterium sp. Marseille]
Length = 587
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 19/143 (13%)
Query: 104 FLELLPSRMR--RELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAI 161
F + P M R LG L+++ G+ A W IS + K ++
Sbjct: 281 FANIFPFLMAAPRYFAGAITLGGLMQISSAFGQVQGAL----SWFISA-FSDLAEWKASV 335
Query: 162 SKVGDF------SDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVE 215
+++ F + D + G+ +L+ + AI ++ V VA ++E+ D ++
Sbjct: 336 NRLAGFHAAVDAAHDEKEGVVVTLNNVGAILIDRV-----VLNVPNGVALTSELTAD-IQ 389
Query: 216 GGGSILVIGPPGVGKTTLIREIA 238
G IL+ GP G GK+TLIR +A
Sbjct: 390 AGQRILIAGPSGCGKSTLIRALA 412
>gi|258542724|ref|YP_003188157.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus IFO
3283-01]
gi|384042645|ref|YP_005481389.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus IFO
3283-12]
gi|384051162|ref|YP_005478225.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus IFO
3283-03]
gi|384054270|ref|YP_005487364.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus IFO
3283-07]
gi|384057504|ref|YP_005490171.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus IFO
3283-22]
gi|384060145|ref|YP_005499273.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus IFO
3283-26]
gi|384063437|ref|YP_005484079.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus IFO
3283-32]
gi|384119447|ref|YP_005502071.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256633802|dbj|BAH99777.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus IFO
3283-01]
gi|256636861|dbj|BAI02830.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus IFO
3283-03]
gi|256639914|dbj|BAI05876.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus IFO
3283-07]
gi|256642970|dbj|BAI08925.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus IFO
3283-22]
gi|256646025|dbj|BAI11973.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus IFO
3283-26]
gi|256649078|dbj|BAI15019.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus IFO
3283-32]
gi|256652065|dbj|BAI17999.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655122|dbj|BAI21049.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus IFO
3283-12]
Length = 840
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 26/99 (26%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRIS---AIRNRKMQVIGLTCRVG 200
DW++S K +KH +++ D + G+++ RI A+++R ++ G
Sbjct: 336 DWLLSIPWKKRTKVKHDLTEAEKILDTDHYGLEKVKERILEYLAVQSRSQKLKG------ 389
Query: 201 RAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
I+C ++GPPGVGKT+L R IA+
Sbjct: 390 -------PILC----------LVGPPGVGKTSLARSIAK 411
>gi|431796408|ref|YP_007223312.1| DNA repair protein RadA [Echinicola vietnamensis DSM 17526]
gi|430787173|gb|AGA77302.1| DNA repair protein RadA [Echinicola vietnamensis DSM 17526]
Length = 458
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 25/118 (21%)
Query: 201 RAVAGSAEIICDLVEGGGSI-----LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R V AE+ D V GGG + L+ G PG+GK+TL+ +IA +L H +V+ V
Sbjct: 74 RLVTADAEL--DRVLGGGIVPGSLTLIGGEPGIGKSTLMLQIALVL---HQTKVLYV--- 125
Query: 256 NEIGGDGDVPHSGIG-RARRMQVPNVNM------QHSVMIEAVENHMPETIIIDEIGT 306
G+ S I RA RMQ + N V+ + +E P+ ++ID I T
Sbjct: 126 -----SGEESESQIKMRADRMQYHSENCFVLSETNTQVIFQQIEALKPDVLVIDSIQT 178
>gi|312127443|ref|YP_003992317.1| ATP-dependent chaperone clpb [Caldicellulosiruptor hydrothermalis
108]
gi|311777462|gb|ADQ06948.1| ATP-dependent chaperone ClpB [Caldicellulosiruptor hydrothermalis
108]
Length = 864
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 123 GDLIEV--VMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISK-----VGDFSDDNRSGI 175
G LIE+ +D R+ L + P ++ E+ V E++ +SK V + R I
Sbjct: 506 GKLIELQKALDRKRQELEKIPPEKRLLKEE-VTEEEIAKIVSKWTGIPVAKLVETERQKI 564
Query: 176 ---DRSLHRISAIRNRKMQVIGLTCR-VGRAVAGSAEIICDLVEGGGSILVIGPPGVGKT 231
D+ LHR ++ ++ + C + RA AG I D + G+ L +GP GVGKT
Sbjct: 565 LELDKILHRRVVGQDEAIEAV---CNAIMRARAG----IKDPRKPIGTFLFLGPTGVGKT 617
Query: 232 TLIREIARMLAD 243
L R +A L D
Sbjct: 618 ELARALAEALFD 629
>gi|226939712|ref|YP_002794785.1| flagellar biosynthesis regulator FlhF [Laribacter hongkongensis
HLHK9]
gi|226714638|gb|ACO73776.1| FlhF [Laribacter hongkongensis HLHK9]
Length = 506
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 22/163 (13%)
Query: 212 DLVEGGGSILVIGPPGVGKTTLIREI-ARMLADDHMKRVVIVDT-SNEIGGDGDVPHSGI 269
D+V+ GG ++GP GVGKTT I ++ AR V ++ T S IG +
Sbjct: 276 DIVDKGGVYALVGPTGVGKTTTIAKLAARATLRKGADAVALITTDSYRIGAQDQL--KLY 333
Query: 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT---------ELEALAASTIAQRG 320
GR ++ V V+ + + + + ++ID +G + + AAS +R
Sbjct: 334 GRILQISVYAVDNEADLALTLKDLSHKHLVLIDSVGIGQRDPRLNGQTQMYAASGQGERA 393
Query: 321 VQ----LVGTAHGMTIDNIVKNPSLQILVGGI-----ESVTLG 354
++ L A G T+ ++++ + LVG I ES LG
Sbjct: 394 IRRILVLAANAAGHTLQDVIQRYQGEGLVGTIISKLDESPALG 436
>gi|298498042|ref|ZP_07007849.1| ATP-dependent protease La [Vibrio cholerae MAK 757]
gi|297542375|gb|EFH78425.1| ATP-dependent protease La [Vibrio cholerae MAK 757]
Length = 786
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+++ K +K +SK + + + G++R ++ R ++ + + R+ +
Sbjct: 295 DWMVNVPWTKRSKVKKDLSKAEEILNADHYGLER-------VKERILEYLAVQSRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
+ I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KSPILC----------LVGPPGVGKTSLGRSIA 369
>gi|255729604|ref|XP_002549727.1| ribosome biogenesis protein BMS1 [Candida tropicalis MYA-3404]
gi|240132796|gb|EER32353.1| ribosome biogenesis protein BMS1 [Candida tropicalis MYA-3404]
Length = 1197
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 21/112 (18%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+ V+GPPG GK+TLI+ + R L T +EI G V G+ RR+
Sbjct: 75 VAVVGPPGTGKSTLIKSLIRRLTK---------TTLSEINGPVTVVS---GKRRRLTFIE 122
Query: 280 VNMQHSVMIEAVENHMPETIIID-EIGTELEALAASTIAQRGVQLVGTAHGM 330
VN + MI+ + ++ID G E+E + IAQ HGM
Sbjct: 123 VNNDLNSMIDIAKVADLVLLLIDGNYGLEMETMEFLNIAQH--------HGM 166
>gi|241952635|ref|XP_002419039.1| nucleolar GTP-binding protein, putative; ribosome biogenesis
protein, putative [Candida dubliniensis CD36]
gi|223642379|emb|CAX42622.1| nucleolar GTP-binding protein, putative [Candida dubliniensis CD36]
Length = 1201
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
I V+GPPG GK+TLI+ + R L T EI G V G+ RR+
Sbjct: 74 IAVVGPPGTGKSTLIKSLIRRLTK---------TTLTEINGPITVVS---GKRRRLTFIE 121
Query: 280 VNMQHSVMIEAVENHMPETIIID-EIGTELEALAASTIAQRGVQLVGTAHGM 330
VN + MI+ + ++ID G E+E + IAQ HGM
Sbjct: 122 VNNDLNSMIDIAKVADLVLLLIDGNYGLEMETMEFLNIAQH--------HGM 165
>gi|421849603|ref|ZP_16282581.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus NBRC
101655]
gi|371459664|dbj|GAB27784.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus NBRC
101655]
Length = 840
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 26/99 (26%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRIS---AIRNRKMQVIGLTCRVG 200
DW++S K +KH +++ D + G+++ RI A+++R ++ G
Sbjct: 336 DWLLSIPWKKRTKVKHDLTEAEKILDTDHYGLEKVKERILEYLAVQSRSQKLKG------ 389
Query: 201 RAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
I+C ++GPPGVGKT+L R IA+
Sbjct: 390 -------PILC----------LVGPPGVGKTSLARSIAK 411
>gi|262404273|ref|ZP_06080828.1| ATP-dependent protease La Type I [Vibrio sp. RC586]
gi|262349305|gb|EEY98443.1| ATP-dependent protease La Type I [Vibrio sp. RC586]
Length = 786
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+++ K +K +SK + + + G++R ++ R ++ + + R+ +
Sbjct: 295 DWMVNVPWTKRSKVKKDLSKAEEILNADHYGLER-------VKERILEYLAVQSRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>gi|195997677|ref|XP_002108707.1| hypothetical protein TRIADDRAFT_51924 [Trichoplax adhaerens]
gi|190589483|gb|EDV29505.1| hypothetical protein TRIADDRAFT_51924 [Trichoplax adhaerens]
Length = 4741
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 140 FPSGDWVIS--EQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTC 197
F S D +IS ++IV D + ++ D+ S I + + A+ NRK+ T
Sbjct: 2417 FTSFDTLISPTKEIVNRYDETNHSDRLKHILDNVSSNISKYTQILPALNNRKLIPTIDTV 2476
Query: 198 RVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDH----MKRVVIVD 253
R +A ++C G +LV G G+GK+ L+++ + L H K ++
Sbjct: 2477 RYSFLMA---LLLCQ----GRHVLVTGESGIGKSALVKDTLKCLEKQHGTGFGKDTILGK 2529
Query: 254 TSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAA 313
N+ GD P G+++ +Q ++ + M A T ++
Sbjct: 2530 IFNKARATGDNPWG--GKSKGVQSEEKDLYSTEMASAAIQFAANT-----TASKARQQLQ 2582
Query: 314 STIAQRGVQLVGT--AHGMTI----------DNIVKNPSLQILVGGIESVTLGDEEAKKR 361
S + +RG ++G MTI D P+L++L I+S D ++
Sbjct: 2583 SVLVKRGKNILGAPGNKKMTIFVDDINLPQRDQFHSQPALEVLRQNIDSGGFYDVKSYSW 2642
Query: 362 K 362
K
Sbjct: 2643 K 2643
>gi|393763471|ref|ZP_10352091.1| putative protein-L-isoaspartate(D-aspartate) O-methyltransferase
[Alishewanella agri BL06]
gi|392605539|gb|EIW88430.1| putative protein-L-isoaspartate(D-aspartate) O-methyltransferase
[Alishewanella agri BL06]
Length = 754
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Query: 186 RNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDH 245
R MQ +G++ +V AG + L G +LV+GP G GK+T + + LADD
Sbjct: 467 RALTMQELGMSAKV----AGYYHRL--LNNPAGLVLVVGPTGSGKSTTLYAGLQELADDG 520
Query: 246 MKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305
++V+ V+ E D ++ + I P+ + A P+ I++ EI
Sbjct: 521 TRKVITVEDPIEYSID-NIQQTRIRSEIGFDFPDA-------LRAFVREDPDVILVGEIR 572
Query: 306 TELEALAASTIAQRGVQLVGTAH 328
AL A +Q G ++ T H
Sbjct: 573 DHPTALEAIRASQTGHLVLSTLH 595
>gi|421853137|ref|ZP_16285816.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|371478597|dbj|GAB31019.1| Lon protease ATP-dependent Lon [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 840
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 26/99 (26%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRIS---AIRNRKMQVIGLTCRVG 200
DW++S K +KH +++ D + G+++ RI A+++R ++ G
Sbjct: 336 DWLLSIPWKKRTKVKHDLTEAEKILDTDHYGLEKVKERILEYLAVQSRSQKLKG------ 389
Query: 201 RAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIAR 239
I+C ++GPPGVGKT+L R IA+
Sbjct: 390 -------PILC----------LVGPPGVGKTSLARSIAK 411
>gi|294141766|ref|YP_003557744.1| ATP-dependent protease La [Shewanella violacea DSS12]
gi|293328235|dbj|BAJ02966.1| ATP-dependent protease La [Shewanella violacea DSS12]
Length = 785
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 20/104 (19%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+IS + +K ++K + D++ G+++ ++ R ++ + + RV +
Sbjct: 296 DWMISVPWRQRSKIKRDLAKAQEVLDEDHFGLEK-------VKERILEYLAVQSRVKQL- 347
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247
I+C ++GPPGVGKT+L + IAR +++
Sbjct: 348 --KGPILC----------LVGPPGVGKTSLGQSIARATGRKYIR 379
>gi|417992571|ref|ZP_12632926.1| late competence protein ComGA [Lactobacillus casei CRF28]
gi|410533150|gb|EKQ07837.1| late competence protein ComGA [Lactobacillus casei CRF28]
Length = 288
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
G + + GP G GKTTL+ ++A LA+ M V+ ++ EI + ++QV
Sbjct: 128 GMLTLAGPTGSGKTTLLYQLATRLAESRM--VLSIEDPVEINQP---------QFLQLQV 176
Query: 278 -PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHG 329
P +M + +++A H P+ ++I EI A +A A G ++ T H
Sbjct: 177 NPEADMTYPQLLKAALRHRPDVLLIGEIRDRQTAQSACEAAISGHIVLATVHA 229
>gi|424591586|ref|ZP_18031013.1| ATP-dependent protease La [Vibrio cholerae CP1037(10)]
gi|408031457|gb|EKG68079.1| ATP-dependent protease La [Vibrio cholerae CP1037(10)]
Length = 786
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+++ K +K +SK + + + G++R ++ R ++ + + R+ +
Sbjct: 295 DWMVNVPWTKRSKVKKDLSKAEEILNADHYGLER-------VKERILEYLAVQSRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>gi|126433864|ref|YP_001069555.1| adenylyl cyclase class-3/4/guanylyl cyclase [Mycobacterium sp. JLS]
gi|126233664|gb|ABN97064.1| adenylyl cyclase class-3/4/guanylyl cyclase [Mycobacterium sp. JLS]
Length = 1055
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 201 RAVAGSAEIICDLVEGGGSIL-VIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIG 259
R +A I+ + + G GS++ V+GP G+GK+ L+RE+A + ++R V V TS+
Sbjct: 236 RELAFLTAILDETIGGSGSVVNVVGPAGIGKSRLVRELAAI----AIRRNVAVFTSSCES 291
Query: 260 GDGDVPHSGIGRARR 274
D+P GI R R
Sbjct: 292 HASDIPFYGISRLLR 306
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,505,874,068
Number of Sequences: 23463169
Number of extensions: 443151399
Number of successful extensions: 2318349
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 1648
Number of HSP's that attempted gapping in prelim test: 2315754
Number of HSP's gapped (non-prelim): 2819
length of query: 701
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 551
effective length of database: 8,839,720,017
effective search space: 4870685729367
effective search space used: 4870685729367
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 81 (35.8 bits)