BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005344
(701 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 19/86 (22%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
+L++GPPGVGKT L R +A RV + S G D G+G AR
Sbjct: 66 GVLLVGPPGVGKTHLARAVA------GEARVPFITAS---GSDFVEMFVGVGAARVRD-- 114
Query: 279 NVNMQHSVMIEAVENHMPETIIIDEI 304
+ E + H P + IDEI
Sbjct: 115 --------LFETAKRHAPCIVFIDEI 132
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 19/86 (22%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
+L++GPPGVGKT L R +A RV + S G D G+G AR
Sbjct: 75 GVLLVGPPGVGKTHLARAVA------GEARVPFITAS---GSDFVEMFVGVGAARVRD-- 123
Query: 279 NVNMQHSVMIEAVENHMPETIIIDEI 304
+ E + H P + IDEI
Sbjct: 124 --------LFETAKRHAPCIVFIDEI 141
>pdb|3L0O|A Chain A, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
pdb|3L0O|B Chain B, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
Length = 427
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 25/139 (17%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNV 280
+++ PP GKTT+++EIA +A++H + I+ +E R +V ++
Sbjct: 179 MIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDE---------------RPEEVTDI 223
Query: 281 NMQHSVMIEAVENHMP--ETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT----IDN 334
+ ++ A MP + + + E+ E+ A + + +V +T + N
Sbjct: 224 RESTNAIVIAAPFDMPPDKQVKVAELTLEM----AKRLVEFNYDVVILLDSLTRLARVYN 279
Query: 335 IVKNPSLQILVGGIESVTL 353
IV PS ++L GG++ L
Sbjct: 280 IVVPPSGKLLTGGVDPAAL 298
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 19/86 (22%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
+L++GPPGVGKT L R +A RV + S G D G+G AR
Sbjct: 75 GVLLVGPPGVGKTHLARAVA------GEARVPFITAS---GSDFVEMFVGVGAARVRD-- 123
Query: 279 NVNMQHSVMIEAVENHMPETIIIDEI 304
+ E + H P + IDEI
Sbjct: 124 --------LFETAKRHAPCIVFIDEI 141
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 19/86 (22%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
+L++GPPGVGKT L R +A RV + S G D G+G AR
Sbjct: 51 GVLLVGPPGVGKTHLARAVA------GEARVPFITAS---GSDFVEMFVGVGAARVRD-- 99
Query: 279 NVNMQHSVMIEAVENHMPETIIIDEI 304
+ E + H P + IDEI
Sbjct: 100 --------LFETAKRHAPCIVFIDEI 117
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 20/99 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+++ D K + + G D+ G+++ ++ R ++ + + ++ +++
Sbjct: 55 DWLVALPWTDETDDKLDLKEAGRLLDEEHHGLEK-------VKERILEYLAVQ-KLTKSL 106
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLA 242
G I+C + GPPGVGKT+L + IA+ L
Sbjct: 107 KGP--ILC----------LAGPPGVGKTSLAKSIAKSLG 133
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 21/187 (11%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHS 267
E+ L +L+ GPPG GKT L R +A + + TS +G + +
Sbjct: 45 ELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRA 104
Query: 268 GIGRARRMQVPNVNMQHSVMIEAVE---------NHMPETIIIDEIGTELEALAASTIAQ 318
AR MQ P++ + I+ V+ H + E E + L +
Sbjct: 105 LFAVARHMQ-PSI-----IFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158
Query: 319 RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTC 378
R V L T +D +L+ + V+L DE+ ++ + + +L+++G P T
Sbjct: 159 RIVVLAATNRPQELD----EAALRRFTKRV-YVSLPDEQTRELLLNR-LLQKQGSPLDTE 212
Query: 379 AVEMISR 385
A+ +++
Sbjct: 213 ALRRLAK 219
>pdb|2R44|A Chain A, Crystal Structure Of A Putative Atpase (Chu_0153) From
Cytophaga Hutchinsonii Atcc 33406 At 2.00 A Resolution
Length = 331
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 172 RSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEG---GGSILVIGPPGV 228
+S ++SL+ RN+ +VI VG+ V G I L+ G GG IL+ G PG+
Sbjct: 5 KSAEEKSLY----YRNKIKEVID---EVGKVVVGQKYXINRLLIGICTGGHILLEGVPGL 57
Query: 229 GKTTLIREIAR 239
KT + +A+
Sbjct: 58 AKTLSVNTLAK 68
>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From
Pyrococcus Abyssi
pdb|1YR7|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp-Gamma-S Bound
Form From Pyrococcus Abyssi
pdb|1YR8|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp Bound Form
From Pyrococcus Abyssi
pdb|1YR9|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Po4 Bound
Form From Pyrococcus Abyssi
pdb|1YRA|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRA|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRB|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|1YRB|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|2OXR|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi (After Gtp Hydrolysis)
Length = 262
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 17/85 (20%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
++ +G G GKTTL E R L D++ V +DT G ++P+ P+
Sbjct: 17 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT-----GVKELPYE----------PS 61
Query: 280 VNMQHSVMIEAV--ENHMPETIIID 302
++++ V +E + E + P I++
Sbjct: 62 IDVREFVTVEEIMREGYGPNGAIVE 86
>pdb|3UE9|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
(Pura) From Burkholderia Thailandensis
pdb|3UE9|B Chain B, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
(Pura) From Burkholderia Thailandensis
pdb|3UE9|C Chain C, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
(Pura) From Burkholderia Thailandensis
pdb|3UE9|D Chain D, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
(Pura) From Burkholderia Thailandensis
Length = 452
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 563 ESFGTISKLPNKST--------SDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGE 614
+ FG+++ P ++ I+I + L+ +D L+EV+L + Y + GE
Sbjct: 317 KEFGSVTGRPRRTGWLDAAALRRSIQINGVSGLCMTKLDVLDGLDEVKLCVGYKI--DGE 374
Query: 615 AVELLPRRSEIVARQLELVESYQLAAENS 643
+LLPR + VAR + E++ E++
Sbjct: 375 DADLLPRGAAEVARCEPVYETFGGWKEST 403
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252
S+++ GPPG GKTTL IAR A+ ++R+ V
Sbjct: 52 SMILWGPPGTGKTTLAEVIAR-YANADVERISAV 84
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 224 GPPGVGKTTLIREIARMLAD-DHMKRVVIVDTSNEIGG 260
GPPG GK+T I +ML + H V+ VD S+ G
Sbjct: 81 GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSG 118
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLAD 243
GS L +GP GVGKT L + +A L D
Sbjct: 589 GSFLFLGPTGVGKTELAKTLAATLFD 614
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDH 245
GG I + G GVGKT LI+E+ +A +H
Sbjct: 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEH 179
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLAD 243
GS L +GP GVGKT L + +A L D
Sbjct: 45 GSFLFLGPTGVGKTELAKTLAATLFD 70
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLAD 243
GS L +GP GVGKT L + +A L D
Sbjct: 48 GSFLFLGPTGVGKTELAKTLAATLFD 73
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDH 245
GG I + G GVGKT LI+E+ +A +H
Sbjct: 144 GGKIGLFGGAGVGKTVLIQELINNVAQEH 172
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 219 SILVIGPPGVGKTTLIREIARM 240
+IL+IGP GVGKT + R +A++
Sbjct: 52 NILMIGPTGVGKTEIARRLAKL 73
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 216 GGGSILVIGPPGVGKTTLIREIARML 241
G +IL+IGP G GKT L +AR+L
Sbjct: 50 GKSNILLIGPTGSGKTLLAETLARLL 75
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 216 GGGSILVIGPPGVGKTTLIREIARML 241
G +IL+IGP G GKT L +AR+L
Sbjct: 50 GKSNILLIGPTGSGKTLLAETLARLL 75
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 219 SILVIGPPGVGKTTLIREIARM 240
+IL+IGP GVGKT + R +A++
Sbjct: 52 NILMIGPTGVGKTEIARRLAKL 73
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 219 SILVIGPPGVGKTTLIREIARM 240
+IL+IGP GVGKT + R +A++
Sbjct: 51 NILMIGPTGVGKTEIARRLAKL 72
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 219 SILVIGPPGVGKTTLIREIARM 240
+IL+IGP GVGKT + R +A++
Sbjct: 58 NILMIGPTGVGKTEIARRLAKL 79
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN 256
L+ GPPG GKT I L+ H R+++ SN
Sbjct: 379 LIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSN 414
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADD 244
GS + +GP GVGKT L R +A + D
Sbjct: 522 GSFIFLGPTGVGKTELARALAESIFGD 548
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 219 SILVIGPPGVGKTTLIREIARM 240
+IL+IGP GVGKT + R +A++
Sbjct: 52 NILMIGPTGVGKTEIARRLAKL 73
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 219 SILVIGPPGVGKTTLIREIA 238
IL++GPPG GKT L R +A
Sbjct: 51 GILLVGPPGTGKTLLARAVA 70
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 219 SILVIGPPGVGKTTLIREIARM 240
+IL IGP GVGKT + R +A++
Sbjct: 52 NILXIGPTGVGKTEIARRLAKL 73
>pdb|3ADB|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 1)
pdb|3ADB|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 1)
pdb|3ADC|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 2)
pdb|3ADC|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 2)
pdb|3ADD|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 3)
pdb|3ADD|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 3)
Length = 259
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 24/32 (75%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVI 251
I++ G PGVGK+T + +A++L+ +++ +V+
Sbjct: 14 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 45
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 217 GGSILVIGPPGVGKTTLIREIARML 241
G ++++GP G GKTTL+R I+ +L
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLL 54
>pdb|2HT1|A Chain A, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
pdb|2HT1|B Chain B, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
Length = 433
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252
L++ PP GKT L++ IA+ +A +H V++V
Sbjct: 197 LIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMV 228
>pdb|1PVO|A Chain A, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|B Chain B, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|C Chain C, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|D Chain D, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|E Chain E, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|F Chain F, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1XPR|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPU|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPO|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
Length = 419
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252
L++ PP GKT L++ IA+ +A +H V++V
Sbjct: 175 LIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMV 206
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 24/32 (75%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVI 251
I++ G PGVGK+T + +A++L+ +++ +V+
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 38
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 219 SILVIGPPGVGKTTLIREIA 238
+IL+ G PGVGKTTL +E+A
Sbjct: 6 NILLTGTPGVGKTTLGKELA 25
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNEIG 259
+L GPPGVGKTT +AR L ++ + + ++ S+E G
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG 89
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252
+L+ G G GKTT + ++ + L + H K+V++V
Sbjct: 103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252
+L+ G G GKTT + ++ + L + H K+V++V
Sbjct: 102 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 134
>pdb|2I3B|A Chain A, Solution Structure Of A Human Cancer-Related Nucleoside
Triphosphatase
Length = 189
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 220 ILVIGPPGVGKTTLIREIARML 241
+ + GPPGVGKTTLI + + +L
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVL 25
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 211 CDLVEGGG-----SILVIGPPGVGKTTLIREIA 238
DL E G +L+ GPPG GKT L++ +A
Sbjct: 195 ADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA 227
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 219 SILVIGPPGVGKTTLIREIA 238
+IL+ G PGVGKTTL +E+A
Sbjct: 13 NILLTGTPGVGKTTLGKELA 32
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDH 245
+ G + +IGP G GK+TL+R + L+ H
Sbjct: 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH 65
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 219 SILVIGPPGVGKTTLIREIARMLA 242
I++ G PGVGKTTL+++I L
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLG 25
>pdb|1PV4|A Chain A, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|B Chain B, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|C Chain C, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|D Chain D, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|E Chain E, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|F Chain F, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
Length = 419
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252
L++ PP GKT L++ IA+ +A +H V+ V
Sbjct: 175 LIVAPPKAGKTXLLQNIAQSIAYNHPDCVLXV 206
>pdb|3ICE|A Chain A, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|B Chain B, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|C Chain C, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|D Chain D, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|E Chain E, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|F Chain F, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
Length = 422
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252
L++ PP GKT L++ IA+ +A +H V+ V
Sbjct: 178 LIVAPPKAGKTXLLQNIAQSIAYNHPDCVLXV 209
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLA 242
E+I G ++L+ GPPG GKT L IA+ L
Sbjct: 68 ELIKSKKXAGRAVLLAGPPGTGKTALALAIAQELG 102
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 209 IICDLVE----GGGSILVIGPPGVGKTTLIREIARMLA 242
+I +L++ G ++L+ GPPG GKT L IA+ L
Sbjct: 51 VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 25/89 (28%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
+L++GPPG GKT L + +A G+ VP +G + +++
Sbjct: 46 GVLLVGPPGTGKTLLAKAVA---------------------GEAHVPFFSMGGSSFIEM- 83
Query: 279 NVNMQHSV---MIEAVENHMPETIIIDEI 304
V + S + E + P I IDEI
Sbjct: 84 FVGLGASRVRDLFETAKKQAPSIIFIDEI 112
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 180 HRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
+ I I+ ++++ LT R G A + + ++ G ++++GP G GKTT +R IA
Sbjct: 3 NNIEVIKMVEVKLENLTKRFGNFTAVNKLNLT--IKDGEFLVLLGPSGCGKTTTLRMIA 59
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 180 HRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
+ I I+ ++++ LT R G A + + ++ G ++++GP G GKTT +R IA
Sbjct: 2 NNIEVIKMVEVKLENLTKRFGNFTAVNKLNLT--IKDGEFLVLLGPSGCGKTTTLRMIA 58
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 220 ILVIGPPGVGKTTLIREIARMLA 242
+L+ GPPG+GKTTL IA L
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELG 63
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 220 ILVIGPPGVGKTTLIREIARMLA 242
+L+ GPPG+GKTTL IA L
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELG 63
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 220 ILVIGPPGVGKTTLIREIARMLA 242
+L+ GPPG+GKTTL IA L
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELG 63
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 219 SILVIGPPGVGKTTLIREIA 238
+L++GPPG GKT L + IA
Sbjct: 47 GVLMVGPPGTGKTLLAKAIA 66
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDH 245
GG I + G GVGKT LI E+ +A H
Sbjct: 165 GGKIGLFGGAGVGKTVLIMELINNIAKAH 193
>pdb|1IDK|A Chain A, Pectin Lyase A
Length = 359
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 202 AVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGD 261
V+GSAE V GGGS + P I E+ L DD + +V+ T + +
Sbjct: 2 GVSGSAEGFAKGVTGGGSATPVYPD------TIDELVSYLGDDEARVIVLTKTFDFTDSE 55
Query: 262 GDVPHSGI---GRARRMQVP 278
G +G G A QV
Sbjct: 56 GTTTGTGCAPWGTASACQVA 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,884,768
Number of Sequences: 62578
Number of extensions: 668043
Number of successful extensions: 2353
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2269
Number of HSP's gapped (non-prelim): 119
length of query: 701
length of database: 14,973,337
effective HSP length: 106
effective length of query: 595
effective length of database: 8,340,069
effective search space: 4962341055
effective search space used: 4962341055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)