BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005344
(701 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51281|YCF45_PORPU Uncharacterized protein ycf45 OS=Porphyra purpurea GN=ycf45 PE=3
SV=1
Length = 565
Score = 459 bits (1180), Expect = e-128, Method: Compositional matrix adjust.
Identities = 259/581 (44%), Positives = 362/581 (62%), Gaps = 47/581 (8%)
Query: 100 ELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKH 159
+LE LE+LP +R L H +LIEVVMDLGR+P ARFP +S++ + +DL +
Sbjct: 6 DLEKLLEILPHFVREPLKQHSNRKNLIEVVMDLGRRPEARFPGNPEYLSQRSISWQDLDY 65
Query: 160 AISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGS 219
+ KVG+FS DNR+GI+++LHRIS++RNR+ +IGLTCRVGRAV G+ II DL+E G S
Sbjct: 66 CVKKVGNFSGDNRAGIEKTLHRISSMRNREGSIIGLTCRVGRAVFGTISIIRDLLEQGDS 125
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
IL++G PGVGKTT +REIAR+L+D+ KRVVI+DTSNEI GDGD+PH IGRARRMQV
Sbjct: 126 ILLLGKPGVGKTTAVREIARVLSDEMEKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAQ 185
Query: 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339
++QH VMIEAVENHMPE IIIDEIGTELEALAA TIA+RGVQLVGTAHG +++++KNP
Sbjct: 186 PDLQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNYLESLIKNP 245
Query: 340 SLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVD 399
+L L+GGI+ VTLGD+EAK+R QK+ILERK P F A+E+ R VH +++ T+D
Sbjct: 246 TLADLIGGIQYVTLGDDEAKRRGTQKSILERKAAPAFQIAIEIHDRKAWIVHEKVEETID 305
Query: 400 AILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESE--LTINEDKSAEMES------- 450
IL G P + RQ+ IL YP +S L+ N +M S
Sbjct: 306 QILQGHQPFVQKRQIQDNGR-------ILIKCYPSQSTEVLSTNSSSLQKMSSLKQKTHF 358
Query: 451 --DEDSEDEDYASNQFKNRSIKRSVRKPSPPVCV--------------YTYRILEADLLQ 494
+ +++ + N+ +NR + PV + Y Y + +
Sbjct: 359 LQQREVKNKTFDLNKLENRDTSLLSTTINTPVNINNHSFQVEASIQYLYAYSLSWQHITS 418
Query: 495 VAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVK 554
V + L+ I +T +I +DAILA S++KQN +R +AK Q+ ++ I+++T+ Q+ +
Sbjct: 419 V--ISALDLPIILTKEIEKSDAILALRSQVKQNTKLRQIAKSRQIIIYTIQNSTVPQITR 476
Query: 555 AVRMILGMESFGTISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGE 614
A+R IL + ++SD+ +K EI AL+E +LAIE I++
Sbjct: 477 ALRKILNI-----------NTSSDLNWVKLCKSKK--FYEIQALQEAKLAIEIIILNENS 523
Query: 615 AVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655
V+L PR + I Q L+++YQL A + G E +L+I P
Sbjct: 524 IVQLTPRSAYIRKMQHNLIDNYQLRARSFGEEPYRKLRIYP 564
>sp|P49540|YCF45_ODOSI Uncharacterized protein ycf45 OS=Odontella sinensis GN=ycf45 PE=3
SV=1
Length = 455
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/467 (40%), Positives = 301/467 (64%), Gaps = 21/467 (4%)
Query: 98 DIELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDL 157
D +L+ ++ LP +R+ + H LIE+V+DLGR+P ARF +G +S++++ +D+
Sbjct: 4 DEDLDNLIKNLPFLIRQNINQHPSKQKLIEIVIDLGRRPEARFTTGPEYLSQKVISWQDI 63
Query: 158 KHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGG 217
H ++ FS+DNR+GI+R+LHRIS IRNR+ + GLTCR+GRA+ G+ + DL+E
Sbjct: 64 NHFTKRISKFSNDNRAGIERTLHRISCIRNRQFLINGLTCRIGRAIFGTISSVRDLLESQ 123
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV 277
SIL++G PGVGKTT+IREIAR+L+D+ KRVVIVDTSNEI GD D+PHS IGRARRMQV
Sbjct: 124 QSILLLGKPGVGKTTIIREIARVLSDEMEKRVVIVDTSNEIAGDSDIPHSAIGRARRMQV 183
Query: 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337
++QH +MIEAVENHMP+ I+IDEIGTELEALAA TIA++GVQLVGT HG ++N++K
Sbjct: 184 ATTDLQHQIMIEAVENHMPQVIVIDEIGTELEALAARTIAEKGVQLVGTTHGNCLENLIK 243
Query: 338 NPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDAT 397
NP L L+GGI+SVTL D+EAK+R QK+I+ERK P F A+E+ + +H + ++
Sbjct: 244 NPPLSDLIGGIQSVTLSDDEAKRRGTQKSIIERKAYPAFQIAIEINTENSWTIHEDIKSS 303
Query: 398 VDAILAGKLPLFEVRQMDAEHHEPLKVTPILRGSYPEESELTINEDKSAEMESDEDSEDE 457
+D +L +VR++ + +K + ++ + + S ++++ S +
Sbjct: 304 IDLLLRKSFTGTQVRELFLDKRTFIKYKKLQIDTFT-----LLKDSNSLKIQTINRSNNW 358
Query: 458 DYASNQ----FKNRSIKRSVRKPSPPVCVYTYRILEADLLQVAKVMG-LEDEIDVTDDIG 512
S + F+N K+ + +Y+ L ++L +++++ L+ + +T ++
Sbjct: 359 FTRSQKSLFYFQNSKAKKCF------IFIYS---LPSNL--ISEILNKLKFQYVLTKELQ 407
Query: 513 TADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMI 559
+ I+ S + QN ++ +A+ +PV+ + + Q++ V++
Sbjct: 408 KSSLIVGSKVSLNQNFKLKKLAQQCSIPVYSVNKENIYQIISLVKLF 454
>sp|O19920|YCF45_CYACA Uncharacterized protein ycf45 OS=Cyanidium caldarium GN=ycf45 PE=3
SV=1
Length = 335
Score = 295 bits (755), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 150/316 (47%), Positives = 218/316 (68%), Gaps = 2/316 (0%)
Query: 100 ELELFLELLPSRMRRELCMH-RELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLK 158
+L FL ++P + + L H R+ G L E+V+D GR+ R+ ++ + + + L
Sbjct: 6 DLRHFLPVVPRFVYKSLKKHPRKFG-LTEIVLDNGRRAEGRWREKTENLTHKKITKKHLL 64
Query: 159 HAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGG 218
I K+G F++DNR+GI ++LHRIS I+NR ++GLT R+GR G II DL+E
Sbjct: 65 RCIKKIGIFNEDNRAGIYQTLHRISCIKNRYGNIVGLTYRIGREFIGIGPIIRDLIESNQ 124
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
S L+IG PG+GKT+ IREI+R+L+++ MKRV+IVD++NEI G+G PH G+ARRM+V
Sbjct: 125 STLLIGRPGIGKTSFIREISRILSNEIMKRVIIVDSANEISGEGCCPHISTGKARRMEVQ 184
Query: 279 NVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKN 338
++N QH VMIEA+ENH PE IIIDEIGTE E+ AA +I+QRG++L+G+AH + N+ KN
Sbjct: 185 SINSQHEVMIEAIENHTPEIIIIDEIGTEYESQAAISISQRGIRLIGSAHSSDLFNLAKN 244
Query: 339 PSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATV 398
P+L LVGGIESVTL D +A RK +KTILERKG F +E+ + +V+ ++ ++
Sbjct: 245 PTLCKLVGGIESVTLSDTQAILRKTKKTILERKGCSCFNATIEINKKRTVKVYTSVEQSI 304
Query: 399 DAILAGKLPLFEVRQM 414
DAIL G++ ++R M
Sbjct: 305 DAILEGRVNNSQIRSM 320
>sp|Q01367|SP3AA_BACSU Stage III sporulation protein AA OS=Bacillus subtilis (strain 168)
GN=spoIIIAA PE=4 SV=1
Length = 307
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Query: 221 LVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGD-GDVPHSGIGRARRM 275
L+IGPP GKTTL+R++AR+ + + IVD +EI G +P G+ R+
Sbjct: 140 LIIGPPQTGKTTLLRDLARLSSTGKKNMLPVKTGIVDERSEIAGCLRGIPQHQFGQ--RI 197
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335
V + + ++ + + PE +I+DEIG + A GV ++ +AHG +I ++
Sbjct: 198 DVLDACPKAEGLMMMIRSMSPEVMIVDEIGRMEDTDALLEALHAGVSVIVSAHGWSISDL 257
Query: 336 VKNPSLQIL 344
+K PSL+ L
Sbjct: 258 MKRPSLKRL 266
>sp|P53034|RFC2_DROME Replication factor C subunit 2 OS=Drosophila melanogaster GN=RfC4
PE=2 SV=1
Length = 331
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNEIGGD 261
+I++ GPPGVGKTT I+ +AR+L D K V+ ++ SNE G D
Sbjct: 51 NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGID 94
>sp|P74956|LON_VIBPA Lon protease OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD
2210633) GN=lon PE=3 SV=2
Length = 783
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 20/95 (21%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +K ++K + +++ G++R ++ R ++ + + R+ +
Sbjct: 295 DWMVSVPWTKRSKVKKNLAKAEEILNEDHYGLER-------VKERILEYLAVQNRINKL- 346
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238
I+C ++GPPGVGKT+L R IA
Sbjct: 347 --KGPILC----------LVGPPGVGKTSLGRSIA 369
>sp|P36775|LONM_YEAST Lon protease homolog, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PIM1 PE=1 SV=2
Length = 1133
Score = 40.8 bits (94), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 20/98 (20%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+ S KH +++I + D++ G+ +++R ++ I + +G+
Sbjct: 572 DWLTSIPWGKHSKEQYSIPRAKKILDEDHYGM-------VDVKDRILEFIAVGKLLGKV- 623
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARML 241
+IIC +GPPGVGKT++ + IAR L
Sbjct: 624 --DGKIIC----------FVGPPGVGKTSIGKSIARAL 649
>sp|Q8KG79|CLPB1_CHLTE Probable chaperone protein ClpB 1 OS=Chlorobium tepidum (strain
ATCC 49652 / DSM 12025 / TLS) GN=clpB1 PE=3 SV=1
Length = 438
Score = 40.4 bits (93), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 31/128 (24%)
Query: 134 RKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSD--DNRSGIDRSLHRISAIRNRKMQ 191
RK AR SGD ++ E+I GD +D +GI S +++ + +
Sbjct: 87 RKIEARQASGDLIMKEEI-----------DAGDIADIVSRWTGIPVS----KMLQSERQK 131
Query: 192 VIGLTCRVGRAVAGSAEII---CDLVEGG-----------GSILVIGPPGVGKTTLIREI 237
++G+ + R V G E + D V+ GS + +GP GVGKT L R +
Sbjct: 132 LLGIESELHRRVVGQDEAVRAVSDAVKRSRAGMGDEKRPIGSFIFLGPTGVGKTELARTL 191
Query: 238 ARMLADDH 245
A L DD
Sbjct: 192 AEYLFDDE 199
>sp|B3CLB3|LON_WOLPP Lon protease OS=Wolbachia pipientis subsp. Culex pipiens (strain
wPip) GN=lon PE=3 SV=1
Length = 818
Score = 39.7 bits (91), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 20/103 (19%)
Query: 145 WVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVA 204
W++ K++D K ++ D+N GI++ +++R ++ + + RV + +
Sbjct: 311 WLLDLPWGKYKDAKINLNAAKKILDENHYGIEK-------VKDRIIEFLAVLKRV-KEIK 362
Query: 205 GSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247
G I+C ++GPPGVGKT+L + +A+ + D ++
Sbjct: 363 GP--ILC----------LVGPPGVGKTSLAKSMAKAVGRDFVR 393
>sp|O83985|RADA_TREPA DNA repair protein RadA homolog OS=Treponema pallidum (strain
Nichols) GN=radA PE=3 SV=1
Length = 455
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 24/117 (20%)
Query: 201 RAVAGSAEIICDLVEGGGS-----ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
R G AE D V GGG+ I++ G PG+GK+TL+ +IA ++ S
Sbjct: 71 RISCGIAEF--DRVLGGGAVRRSAIMIGGEPGIGKSTLLLQIAAACGKS------VLYVS 122
Query: 256 NEIGGDGDVPHSGIGRARRMQVP--NVNMQHSVMIEAVE----NHMPETIIIDEIGT 306
E + P GRA R+ +P N+ + + +E VE P +I+D I T
Sbjct: 123 GE-----ESPGQIRGRADRLNIPIQNIELLCATRVEDVERVLNTRCPTFVIVDSIQT 174
>sp|P40340|TBP7_YEAST Tat-binding homolog 7 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YTA7 PE=1 SV=2
Length = 1379
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 14/85 (16%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+L GPPG GKT + R +A + D K + D+ +G A R
Sbjct: 450 VLFHGPPGTGKTLMARALAASCSSDERKITFFMRKG------ADILSKWVGEAER----- 498
Query: 280 VNMQHSVMIEAVENHMPETIIIDEI 304
Q ++ E + H P I DEI
Sbjct: 499 ---QLRLLFEEAKKHQPSIIFFDEI 520
>sp|Q72JM6|LON2_THET2 Lon protease 2 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163
/ DSM 7039) GN=lon2 PE=3 SV=1
Length = 804
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 175 IDRSLHRISAIRNRKMQVIGL-TCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTL 233
++R + + +++R ++ + + + RA G EI D V G +L +GPPGVGKT++
Sbjct: 314 LERDHYGLEKVKDRVLEYLAVRKLKAERAKRG--EIPPDEVNKGPILLFVGPPGVGKTSI 371
Query: 234 IREIARMLADDHMK 247
+ IA L +++
Sbjct: 372 AKSIAEALGRKYVR 385
>sp|P42730|CLPB1_ARATH Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2
Length = 911
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 186 RNRKMQVIGLTCRVGRAVAGSAEIICDLVEG--------------GGSILVIGPPGVGKT 231
+N K ++IGL R+ + V G + + + E GS L +GP GVGKT
Sbjct: 554 QNEKERLIGLADRLHKRVVGQNQAVNAVSEAILRSRAGLGRPQQPTGSFLFLGPTGVGKT 613
Query: 232 TLIREIARMLADD 244
L + +A L DD
Sbjct: 614 ELAKALAEQLFDD 626
>sp|Q88VX7|CLPB_LACPL Chaperone protein ClpB OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=clpB PE=3 SV=1
Length = 867
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 218 GSILVIGPPGVGKTTLIREIARML--ADDHMKRV 249
GS + +GP GVGKT L + +A L ADDHM R+
Sbjct: 601 GSFMFLGPTGVGKTELAKALAENLFDADDHMVRI 634
>sp|B3M301|SPAST_DROAN Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1
Length = 770
Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 9/182 (4%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHS 267
E+ L +L+ GPPG GKT L R +A + + TS +G + +
Sbjct: 519 ELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRA 578
Query: 268 GIGRARRMQ--VPNVNMQHSVMIEAVEN-HMPETIIIDEIGTELEALAASTIAQRGVQLV 324
AR MQ + ++ S++ E N H + E E + L + R V L
Sbjct: 579 LFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLA 638
Query: 325 GTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMIS 384
T +D +L+ + V+L DE+ ++ + + +L+++G P T A+ ++
Sbjct: 639 ATNRPQELDEA----ALRRFTKRV-YVSLPDEQTRELLLSR-LLQKQGSPLDTEALRRLA 692
Query: 385 RT 386
+T
Sbjct: 693 KT 694
>sp|Q54ST4|RFC5_DICDI Probable replication factor C subunit 5 OS=Dictyostelium discoideum
GN=rfc5 PE=3 SV=1
Length = 347
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNEIGGD 261
+L GPPG GKT+ I+ IAR L D+ R+V+ ++ S++ G D
Sbjct: 60 LLFYGPPGTGKTSTIQAIARKLYGDNYSRMVLELNASDDRGID 102
>sp|O31147|LON_MYCSM Lon protease OS=Mycobacterium smegmatis GN=lon PE=1 SV=1
Length = 779
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 172 RSGIDRSLHRISAIRNR---KMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVI-GPPG 227
R +D H +S +++R + V G + G AV G G G+++V+ GPPG
Sbjct: 304 REILDTDHHGLSDVKDRIVEYLAVRGAAPQRGMAVVGG--------RGSGAVMVLAGPPG 355
Query: 228 VGKTTLIREIARMLADDHMKRVVIVDTSNE 257
VGKT+L +AR L D RV + +E
Sbjct: 356 VGKTSLGESVARAL-DRKFVRVALGGVRDE 384
>sp|B1LAB2|NTPTH_THESQ Nucleoside-triphosphatase THEP1 OS=Thermotoga sp. (strain RQ2)
GN=TRQ2_0909 PE=3 SV=1
Length = 174
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 23/105 (21%)
Query: 219 SILVIGPPGVGKTTLIREIARMLAD------DHMK--------RVVIVDTSNEIGGDGDV 264
IL+ G PGVGKTTLI++++R+L + + M+ +++ +D I D+
Sbjct: 2 KILITGRPGVGKTTLIKKLSRLLQNAGGFYTEEMREDGKRIGFKIITLDGEEGILARTDL 61
Query: 265 PHSGIGRARRMQVPNVNMQ--HSVMIEAVENHMPET--IIIDEIG 305
P R+ VN++ + + ++E E IIIDEIG
Sbjct: 62 PS-----PYRVGKYYVNLKDLEEIGVRSLERAFQEKDLIIIDEIG 101
>sp|Q8EV77|LON_MYCPE Lon protease OS=Mycoplasma penetrans (strain HF-2) GN=lon PE=3 SV=1
Length = 781
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 20/104 (19%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW+I + D +++ V + ++N G+++ RI + L R+ ++
Sbjct: 305 DWLIDLPYWQKTDDVDSLADVENVLNNNHYGLEKVKERI---------IEYLAVRM-KSK 354
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247
+ IIC ++GPPGVGKT+L + IA L +K
Sbjct: 355 SAKGSIIC----------LVGPPGVGKTSLAQSIAEALKKKFVK 388
>sp|Q550C8|LONM2_DICDI Lon protease homolog, mitochondrial 2 OS=Dictyostelium discoideum
GN=DDB_0217928 PE=3 SV=1
Length = 836
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRM 275
GG IL++GPPG GKT++ + IA L R+ +GG DV S I RR
Sbjct: 383 GGKVILLVGPPGTGKTSVGKSIANALG-RQFHRI-------SVGGLSDV--SEIKGHRRT 432
Query: 276 QVPNVNMQHSVMIEAVENHMPETIIIDEI 304
V ++ + ++ V+ P I+IDEI
Sbjct: 433 YVASMPGKIIQALKTVKTSNP-VILIDEI 460
>sp|B0TFI9|LON_HELMI Lon protease OS=Heliobacterium modesticaldum (strain ATCC 51547 /
Ice1) GN=lon PE=3 SV=1
Length = 813
Score = 37.4 bits (85), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 26/101 (25%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRI---SAIRNRKMQVIGLTCRVG 200
DW+++ K + I K +++ G+D+ RI AIR ++ G
Sbjct: 299 DWLLALPWAKQTKDRLDIDKAEAILNEDHFGLDKVKERIIEYLAIRKLAQKMKG------ 352
Query: 201 RAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARML 241
IIC +GPPGVGKT+L R IAR L
Sbjct: 353 -------PIIC----------FVGPPGVGKTSLARSIARAL 376
>sp|O51558|LON2_BORBU Lon protease 2 OS=Borrelia burgdorferi (strain ATCC 35210 / B31 /
CIP 102532 / DSM 4680) GN=lon2 PE=3 SV=2
Length = 796
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 62/212 (29%)
Query: 90 ASTSRSGADIELELFLEL-LPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSG--DWV 146
AS S I+LEL EL + +R+ + + DL+++ D+ K A+ G D+
Sbjct: 172 ASNSNLENSIKLELLQELNVKTRIEKLIVNLSIEIDLLDLKKDINSKVRAKLDKGQRDYF 231
Query: 147 ISEQIVKHE-----DLKHAISKVG--DFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRV 199
+SEQ+ + + D I ++ D +D +S I++ + R+S KMQ+ +
Sbjct: 232 LSEQVKEIQKRLGKDENDYIDRLNSKDIPEDVKSKIEKEISRLS-----KMQMNSPDANI 286
Query: 200 GRAVAGSAEIICDLVEGGGSIL-------------------------------------- 221
R+ E+I DL +++
Sbjct: 287 IRSYI---ELILDLPWNENTVMKNHLSEIEFILRNSHYGMDEAKEKIINFLAVYQINSKV 343
Query: 222 ------VIGPPGVGKTTLIREIARMLADDHMK 247
++GPPG+GKT+L+ IAR L+ + +K
Sbjct: 344 KAPILCLVGPPGIGKTSLVESIARSLSREFVK 375
>sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1
Length = 1183
Score = 37.4 bits (85), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 20/112 (17%)
Query: 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPN 279
+ V+GPPG GKTTLIR + R + T N+I G V R ++ P
Sbjct: 72 VAVVGPPGTGKTTLIRSLVRRMTK---------STLNDIQGPITVVSGKHRRLTFLECPA 122
Query: 280 VNMQHSVMIEAVENHMPETIIID-EIGTELEALAASTIAQRGVQLVGTAHGM 330
++ + I + + + ++ID G E+E + IAQ HGM
Sbjct: 123 DDLNAMIDIAKIADLV--LLLIDGNFGFEMETMEFLNIAQH--------HGM 164
>sp|O66827|RADA_AQUAE DNA repair protein RadA homolog OS=Aquifex aeolicus (strain VF5)
GN=radA PE=3 SV=1
Length = 444
Score = 37.4 bits (85), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHS---GIGRAR 273
G IL+ G PG+GK+TL+ +I+ +A+ K+V+ V S E G + GI
Sbjct: 84 GQVILIAGEPGIGKSTLLLQISDRVANG--KKVLYV--SGEESGTQIALRAKRLGINNEN 139
Query: 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306
+ P VN++ +++ +E P +++D + T
Sbjct: 140 LLVYPEVNLEK--ILQTLEKEKPSLLVLDSVQT 170
>sp|A8ET01|UREG_ARCB4 Urease accessory protein UreG OS=Arcobacter butzleri (strain
RM4018) GN=ureG PE=3 SV=1
Length = 195
Score = 37.0 bits (84), Expect = 0.47, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 25/131 (19%)
Query: 220 ILVIGPPGVGKTTLIREIARMLAD-----------------DHMKRVVIVDTSNEIGGD- 261
I + GP G GKT+LI + +L D +++K+ + +D IG +
Sbjct: 5 IGIAGPVGSGKTSLIESLTNLLKDKYSLGIVTNDIYTTEDANYLKKTLDLDNERIIGVET 64
Query: 262 GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGV 321
G PH+ I +++M ++E E P+ + ++ G L A + + +
Sbjct: 65 GGCPHTAIR-------DDISMNQKAVVELEEKFNPDIVFVESGGDNLSATFSYELIDYYI 117
Query: 322 QLVGTAHGMTI 332
++ A G I
Sbjct: 118 YVIDVAQGADI 128
>sp|Q9WXP3|NTPTH_THEMA Nucleoside-triphosphatase THEP1 OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0036 PE=3
SV=1
Length = 174
Score = 37.0 bits (84), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 23/105 (21%)
Query: 219 SILVIGPPGVGKTTLIREIARMLAD------DHMK--------RVVIVDTSNEIGGDGDV 264
IL+ G PGVGKTTLI++++R+L + + M+ +++ +D I D+
Sbjct: 2 KILITGRPGVGKTTLIKKLSRLLQNAGGFYTEEMREGEKRIGFKIITLDGEEGILARTDL 61
Query: 265 PHSGIGRARRMQVPNVNMQ--HSVMIEAVENHMPET--IIIDEIG 305
P R+ VN++ + + ++E E II+DEIG
Sbjct: 62 PS-----PYRVGKYYVNLKDLEEIGVRSLERAFQEKDLIIVDEIG 101
>sp|Q8G0I7|LON_BRUSU Lon protease OS=Brucella suis biovar 1 (strain 1330) GN=lon PE=3
SV=1
Length = 812
Score = 37.0 bits (84), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 20/104 (19%)
Query: 144 DWVISEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAV 203
DW++S K +K ++ + D G+ + RI +G R+
Sbjct: 307 DWLLSIPWGKKSKVKQDLNFAQEVLDAEHFGLGKVKERI----------VGYLAVQARST 356
Query: 204 AGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247
I+C ++GPPGVGKT+L R IA+ ++++
Sbjct: 357 KIKGPILC----------LVGPPGVGKTSLARSIAKATGREYVR 390
>sp|Q7CU92|CLPB_AGRT5 Chaperone protein ClpB OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=clpB PE=3 SV=2
Length = 874
Score = 37.0 bits (84), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRV 249
GS + +GP GVGKT L + +AR L DD V
Sbjct: 601 GSFIFLGPTGVGKTELTKSLARFLFDDETAMV 632
>sp|Q72KS4|LON1_THET2 Lon protease 1 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163
/ DSM 7039) GN=lon1 PE=3 SV=1
Length = 795
Score = 37.0 bits (84), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 175 IDRSLHRISAIRNRKMQVIGL-TCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTL 233
+D + + ++ R ++ + + G+ V G A I+C +GPPGVGKT+L
Sbjct: 320 LDEDHYGLKEVKERILEYLAVRQLTQGKEVKGHAPILC----------FVGPPGVGKTSL 369
Query: 234 IREIARML 241
+ IAR +
Sbjct: 370 GKSIARSM 377
>sp|B1AIY7|LON_UREP2 Lon protease OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27
/ NCTC 11736) GN=lon PE=3 SV=1
Length = 791
Score = 37.0 bits (84), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 28/108 (25%)
Query: 144 DWVI----SEQIVKHEDLKHAISKVGDFSDDNRSGIDRSLHRISAIRNRKMQVIGLTCRV 199
DW++ ++Q V + DL + + DDN GI++ ++ R ++ + L R
Sbjct: 305 DWLLDLPWTQQGVDNTDLMSVRTHL----DDNHYGIEK-------VKERILEYLALRMRN 353
Query: 200 GRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247
IIC ++GPPGVGKT+L+ IA+ L +K
Sbjct: 354 PNL---KGPIIC----------LVGPPGVGKTSLVTSIAQALNKKFVK 388
>sp|Q4UN57|CLPB_RICFE Chaperone protein ClpB OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=clpB PE=3 SV=2
Length = 858
Score = 36.6 bits (83), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 194 GLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADD 244
G++ V R+ AG I D+ GS L +GP GVGKT L + +A L DD
Sbjct: 578 GVSDAVRRSRAG----IQDINRPLGSFLFLGPTGVGKTELTKALASFLFDD 624
>sp|Q92MK7|CLPB_RHIME Chaperone protein ClpB OS=Rhizobium meliloti (strain 1021) GN=clpB
PE=3 SV=1
Length = 868
Score = 36.6 bits (83), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDH 245
GS + +GP GVGKT L + +AR L DD
Sbjct: 601 GSFIFLGPTGVGKTELTKALARFLFDDE 628
>sp|Q6ML73|LON1_BDEBA Lon protease 1 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 /
DSM 50701 / NCIB 9529 / HD100) GN=lon1 PE=3 SV=1
Length = 793
Score = 36.6 bits (83), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 218 GSILV-IGPPGVGKTTLIREIARMLADDHMK 247
GSIL+ IGPPGVGKT+L + IAR L +++
Sbjct: 347 GSILMFIGPPGVGKTSLGKSIARALGKKYVR 377
>sp|Q54PJ1|PRS10_DICDI 26S protease regulatory subunit 10B OS=Dictyostelium discoideum
GN=psmC6 PE=1 SV=1
Length = 393
Score = 36.6 bits (83), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 19/86 (22%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
+L+ GPPG GKT L R IA L + +K V IG V G AR
Sbjct: 173 GVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYAR----- 227
Query: 279 NVNMQHSVMIEAVENHMPETIIIDEI 304
+H P I +DEI
Sbjct: 228 --------------DHQPCVIFMDEI 239
>sp|Q8T5T1|MDN1_GIAIN Midasin OS=Giardia intestinalis GN=MDN1 PE=3 SV=1
Length = 4835
Score = 36.6 bits (83), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE 257
EII + +L++GP G+GKTT ++ IAR L K++ +V+ S++
Sbjct: 340 EIISSAIRNNEPLLLVGPTGIGKTTCLQVIARALG----KKLHVVNMSSQ 385
>sp|Q7VYV6|CLPB_BORPE Chaperone protein ClpB OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=clpB PE=3 SV=1
Length = 865
Score = 36.6 bits (83), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLAD--DHMKRV 249
GS L +GP GVGKT L R +A L D +HM R+
Sbjct: 605 GSFLFLGPTGVGKTELTRALADFLFDSEEHMIRI 638
>sp|Q7W9E6|CLPB_BORPA Chaperone protein ClpB OS=Bordetella parapertussis (strain 12822 /
ATCC BAA-587 / NCTC 13253) GN=clpB PE=3 SV=1
Length = 865
Score = 36.6 bits (83), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLAD--DHMKRV 249
GS L +GP GVGKT L R +A L D +HM R+
Sbjct: 605 GSFLFLGPTGVGKTELTRALADFLFDSEEHMIRI 638
>sp|Q7WHB6|CLPB_BORBR Chaperone protein ClpB OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=clpB PE=3 SV=1
Length = 865
Score = 36.6 bits (83), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLAD--DHMKRV 249
GS L +GP GVGKT L R +A L D +HM R+
Sbjct: 605 GSFLFLGPTGVGKTELTRALADFLFDSEEHMIRI 638
>sp|Q48761|RADA_LISMO DNA repair protein RadA homolog OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=radA PE=3 SV=2
Length = 457
Score = 36.6 bits (83), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
G +LV G PG+GK+TL+ +++ L + K + I G+ + + + RA R+Q
Sbjct: 90 GSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLY-------ISGEESIKQTKL-RAERLQ 141
Query: 277 VP--NVNMQHSVMIEAVENHM----PETIIIDEIGT 306
V N+ + +EAV+ + P+ ++ID I T
Sbjct: 142 VSGDNLYVYAETNLEAVQETIDFVKPDFVVIDSIQT 177
>sp|Q9RXG4|LON_DEIRA Lon protease OS=Deinococcus radiodurans (strain ATCC 13939 / DSM
20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 /
R1 / VKM B-1422) GN=lon PE=3 SV=1
Length = 821
Score = 36.6 bits (83), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 175 IDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLI 234
+D + + +++R ++ + + R+ + A EI + V G ++ GPPGVGKT++
Sbjct: 319 LDEDHYGLEKVKDRVLEFLAVR-RLRKERAERGEISAEEVNKGPILVFTGPPGVGKTSIA 377
Query: 235 REIARMLADDHMK 247
+ IA+ L +++
Sbjct: 378 QSIAKSLGRKYVR 390
>sp|Q83FI1|CLPB_TROWT Chaperone protein ClpB OS=Tropheryma whipplei (strain Twist)
GN=clpB PE=3 SV=1
Length = 705
Score = 36.6 bits (83), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRV 249
G+ L +GP GVGKT L++ +A +L D + R+
Sbjct: 449 GTFLFLGPTGVGKTQLVKALASLLYDGEIVRI 480
>sp|Q83N78|CLPB_TROW8 Chaperone protein ClpB OS=Tropheryma whipplei (strain TW08/27)
GN=clpB PE=3 SV=1
Length = 699
Score = 36.6 bits (83), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRV 249
G+ L +GP GVGKT L++ +A +L D + R+
Sbjct: 443 GTFLFLGPTGVGKTQLVKALASLLYDGEIVRI 474
>sp|Q92JK8|CLPB_RICCN Chaperone protein ClpB OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=clpB PE=3 SV=1
Length = 857
Score = 36.2 bits (82), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 194 GLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADD 244
G++ V R+ AG I D+ GS L +GP GVGKT L + +A L DD
Sbjct: 578 GVSDAVRRSRAG----IQDINRPLGSFLFLGPTGVGKTELTKALAGFLFDD 624
>sp|Q92F42|RADA_LISIN DNA repair protein RadA homolog OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=radA PE=3 SV=1
Length = 457
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQ 276
G +LV G PG+GK+TL+ +++ L + K + I G+ + + + RA R+Q
Sbjct: 90 GSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLY-------ISGEESIKQTKL-RAERLQ 141
Query: 277 VP--NVNMQHSVMIEAVENHM----PETIIIDEIGT 306
V N+ + +EAV+ + P+ ++ID I T
Sbjct: 142 VSGDNLYVYAETNLEAVQETIDFVKPDFVVIDSIQT 177
>sp|Q8G4X4|CLPB_BIFLO Chaperone protein ClpB OS=Bifidobacterium longum (strain NCC 2705)
GN=clpB PE=3 SV=1
Length = 889
Score = 36.2 bits (82), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255
GS L +GP GVGKT L + +A L DD K +V +D S
Sbjct: 610 GSFLFLGPTGVGKTELAKALADFLFDDE-KAMVRIDMS 646
>sp|Q7NWN7|CLPB_CHRVO Chaperone protein ClpB OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=clpB PE=3 SV=1
Length = 859
Score = 36.2 bits (82), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 218 GSILVIGPPGVGKTTLIREIARMLAD--DHMKRV 249
GS L +GP GVGKT L + +A L D DH+ R+
Sbjct: 603 GSFLFLGPTGVGKTELCKTLASFLFDSKDHLIRI 636
>sp|Q5SI82|FTSH_THET8 ATP-dependent zinc metalloprotease FtsH OS=Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579) GN=ftsH PE=1 SV=1
Length = 624
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 19/86 (22%)
Query: 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP 278
+L++GPPGVGKT L R +A RV + S G D G+G AR
Sbjct: 191 GVLLVGPPGVGKTHLARAVA------GEARVPFITAS---GSDFVEMFVGVGAARVRD-- 239
Query: 279 NVNMQHSVMIEAVENHMPETIIIDEI 304
+ E + H P + IDEI
Sbjct: 240 --------LFETAKRHAPCIVFIDEI 257
>sp|Q9LSJ5|AB18B_ARATH ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18
PE=3 SV=1
Length = 1225
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 44/200 (22%)
Query: 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRAR 273
+E G S ++GP G GK+T+I I R D +K +V +D G D H R+
Sbjct: 1005 IEDGKSTAIVGPSGSGKSTIISLIERFY--DPLKGIVKID-----GRDIRSCHL---RSL 1054
Query: 274 RMQVPNVN---------MQHSVMIEAVENHMPETIIID--------EIGTELEALAASTI 316
R + V+ ++ ++M N + E+ II+ + T L +
Sbjct: 1055 RQHIALVSQEPTLFAGTIRENIMYGGASNKIDESEIIEAAKAANAHDFITSLSNGYDTCC 1114
Query: 317 AQRGVQLV-GTAHGMTIDN-IVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPP 374
RGVQL G + I ++KNPS+ +L ++ +++ V + LER
Sbjct: 1115 GDRGVQLSGGQKQRIAIARAVLKNPSVLLLDEATSAL-----DSQSESVVQDALERL--- 1166
Query: 375 TFTCAVEMISRTECRVHHRL 394
M+ RT + HRL
Sbjct: 1167 -------MVGRTSVVIAHRL 1179
>sp|B4NBP4|SPAST_DROWI Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1
Length = 777
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 15/224 (6%)
Query: 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHS 267
E+ L +L+ GPPG GKT L R +A + + TS +G + +
Sbjct: 526 ELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRA 585
Query: 268 GIGRARRMQ--VPNVNMQHSVMIEAVEN-HMPETIIIDEIGTELEALAASTIAQRGVQLV 324
AR MQ + ++ S++ E N H + E E + L + R V L
Sbjct: 586 LFAVARHMQPSIIFIDEVDSLLSERSSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLA 645
Query: 325 GTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMIS 384
T +D +L+ + V+L DE+ ++ + + +L+++G P T A+ ++
Sbjct: 646 ATNRPQELDEA----ALRRFTKRV-YVSLPDEQTRELLLNR-LLQKQGSPLDTEALRRLA 699
Query: 385 R-TECRVHHRLDATVDAILAGKLPLFEVRQMDAEHHEPLKVTPI 427
+ TE L A LA L +R+++ E + L ++ +
Sbjct: 700 KITEGYSGSDLTA-----LAKDAALEPIRELNVEQVKCLDISAM 738
>sp|O84300|RADA_CHLTR DNA repair protein RadA homolog OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=radA PE=3 SV=1
Length = 454
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 23/102 (22%)
Query: 216 GGGSI-----LVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIG 270
GGG++ L+ G PG+GK+TL+ +I+ A K + + G+ V + +
Sbjct: 81 GGGTVRGSLALLGGEPGIGKSTLLLQISSQFAAAGHKVLYVC-------GEESVSQTSL- 132
Query: 271 RARRMQV--------PNVNMQHSVMIEAVENHMPETIIIDEI 304
RA+R+Q+ P N++ + + ++N P+ ++ID I
Sbjct: 133 RAQRLQISSNNIFLFPETNLED--IKQQIDNIAPDILVIDSI 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 251,932,510
Number of Sequences: 539616
Number of extensions: 10822649
Number of successful extensions: 63349
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 375
Number of HSP's that attempted gapping in prelim test: 62881
Number of HSP's gapped (non-prelim): 816
length of query: 701
length of database: 191,569,459
effective HSP length: 125
effective length of query: 576
effective length of database: 124,117,459
effective search space: 71491656384
effective search space used: 71491656384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)