Query 005344
Match_columns 701
No_of_seqs 522 out of 3883
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 21:59:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3854 SpoIIIAA ncharacterize 100.0 1.2E-44 2.7E-49 364.7 13.0 281 99-382 1-304 (308)
2 COG1126 GlnQ ABC-type polar am 100.0 3.1E-30 6.6E-35 259.3 18.8 160 189-357 2-221 (240)
3 COG1120 FepC ABC-type cobalami 100.0 1.6E-29 3.5E-34 261.7 18.2 163 188-357 1-224 (258)
4 COG1125 OpuBA ABC-type proline 100.0 1.4E-27 3E-32 244.8 16.2 159 189-356 1-220 (309)
5 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 6.5E-27 1.4E-31 241.6 19.2 163 188-358 3-224 (254)
6 COG1116 TauB ABC-type nitrate/ 99.9 3.7E-27 7.9E-32 241.6 17.0 151 189-346 3-207 (248)
7 COG4555 NatA ABC-type Na+ tran 99.9 2.3E-27 5E-32 236.4 13.2 163 189-359 1-220 (245)
8 COG3842 PotA ABC-type spermidi 99.9 4.6E-27 9.9E-32 252.8 14.9 161 187-356 3-221 (352)
9 COG1124 DppF ABC-type dipeptid 99.9 1.6E-26 3.4E-31 235.9 15.5 164 188-356 2-226 (252)
10 COG1135 AbcC ABC-type metal io 99.9 3.3E-26 7.2E-31 240.0 17.4 165 189-357 1-227 (339)
11 PRK13537 nodulation ABC transp 99.9 4.5E-26 9.8E-31 241.2 18.2 164 186-356 4-222 (306)
12 COG1131 CcmA ABC-type multidru 99.9 5.5E-26 1.2E-30 239.7 17.5 162 189-356 4-221 (293)
13 COG3839 MalK ABC-type sugar tr 99.9 3.9E-26 8.4E-31 244.5 16.1 160 188-356 2-218 (338)
14 COG1136 SalX ABC-type antimicr 99.9 9.2E-26 2E-30 229.9 17.0 157 190-348 2-220 (226)
15 PRK13536 nodulation factor exp 99.9 1.2E-25 2.6E-30 241.6 18.5 166 184-356 36-256 (340)
16 COG1127 Ttg2A ABC-type transpo 99.9 1.4E-25 3E-30 228.7 17.3 162 187-357 6-231 (263)
17 COG3638 ABC-type phosphate/pho 99.9 8.6E-26 1.9E-30 229.7 14.7 165 188-358 2-234 (258)
18 cd03216 ABC_Carb_Monos_I This 99.9 2.8E-25 6.2E-30 214.4 15.9 148 190-348 1-160 (163)
19 COG1118 CysA ABC-type sulfate/ 99.9 1.4E-25 3E-30 235.0 14.6 157 188-351 1-219 (345)
20 TIGR01288 nodI ATP-binding ABC 99.9 4.5E-25 9.8E-30 232.7 18.6 163 187-356 2-219 (303)
21 COG4152 ABC-type uncharacteriz 99.9 1.3E-25 2.7E-30 229.3 13.5 165 188-361 1-219 (300)
22 COG1122 CbiO ABC-type cobalt t 99.9 5.7E-25 1.2E-29 225.8 16.9 163 188-356 2-223 (235)
23 cd03261 ABC_Org_Solvent_Resist 99.9 9.5E-25 2.1E-29 220.9 18.2 158 190-356 1-221 (235)
24 TIGR00960 3a0501s02 Type II (G 99.9 6.7E-25 1.5E-29 219.1 16.7 155 189-348 1-216 (216)
25 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 7.4E-25 1.6E-29 207.9 16.2 137 190-347 1-144 (144)
26 cd03259 ABC_Carb_Solutes_like 99.9 9.1E-25 2E-29 217.7 17.0 152 190-348 1-209 (213)
27 PRK11432 fbpC ferric transport 99.9 1E-24 2.3E-29 235.4 18.8 160 188-356 5-221 (351)
28 cd03265 ABC_DrrA DrrA is the A 99.9 1.5E-24 3.2E-29 217.4 18.2 152 190-348 1-210 (220)
29 cd03246 ABCC_Protease_Secretio 99.9 1E-24 2.3E-29 211.7 16.6 153 190-348 1-173 (173)
30 cd03230 ABC_DR_subfamily_A Thi 99.9 9.8E-25 2.1E-29 211.9 16.1 151 190-348 1-173 (173)
31 TIGR02314 ABC_MetN D-methionin 99.9 1.3E-24 2.8E-29 234.1 18.6 163 189-356 1-225 (343)
32 COG0444 DppD ABC-type dipeptid 99.9 9.2E-25 2E-29 230.6 16.8 183 190-383 2-257 (316)
33 PRK11650 ugpC glycerol-3-phosp 99.9 1.6E-24 3.4E-29 234.4 18.9 159 189-356 3-219 (356)
34 cd03229 ABC_Class3 This class 99.9 1.4E-24 3.1E-29 211.6 16.8 151 190-347 1-178 (178)
35 TIGR03522 GldA_ABC_ATP gliding 99.9 1.7E-24 3.7E-29 228.3 18.7 159 189-356 2-216 (301)
36 cd03215 ABC_Carb_Monos_II This 99.9 1.5E-24 3.3E-29 212.2 16.5 150 188-348 3-182 (182)
37 PRK11308 dppF dipeptide transp 99.9 1.8E-24 3.8E-29 231.4 18.5 165 188-356 4-239 (327)
38 cd03226 ABC_cobalt_CbiO_domain 99.9 1.1E-24 2.3E-29 216.2 15.6 153 192-348 2-204 (205)
39 PRK13637 cbiO cobalt transport 99.9 2.3E-24 5E-29 225.9 18.9 167 189-357 2-230 (287)
40 cd03268 ABC_BcrA_bacitracin_re 99.9 2.4E-24 5.1E-29 214.0 17.9 152 190-348 1-204 (208)
41 COG2884 FtsE Predicted ATPase 99.9 7.2E-25 1.6E-29 217.0 13.9 157 189-349 1-216 (223)
42 cd03266 ABC_NatA_sodium_export 99.9 2.6E-24 5.6E-29 214.8 18.0 157 189-348 1-214 (218)
43 PRK13643 cbiO cobalt transport 99.9 2.6E-24 5.5E-29 225.7 18.8 168 189-358 1-230 (288)
44 TIGR03265 PhnT2 putative 2-ami 99.9 2.2E-24 4.8E-29 233.0 18.5 159 189-356 4-219 (353)
45 cd03293 ABC_NrtD_SsuB_transpor 99.9 2.4E-24 5.3E-29 215.9 17.5 159 190-349 1-213 (220)
46 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 1.5E-24 3.2E-29 216.6 15.7 155 190-348 1-218 (218)
47 PRK11022 dppD dipeptide transp 99.9 1.8E-24 3.9E-29 231.1 17.3 176 189-378 3-252 (326)
48 PRK13651 cobalt transporter AT 99.9 3.7E-24 8E-29 226.8 19.1 166 189-358 2-251 (305)
49 cd03296 ABC_CysA_sulfate_impor 99.9 4.7E-24 1E-28 216.6 19.0 162 188-356 1-221 (239)
50 COG1117 PstB ABC-type phosphat 99.9 7.6E-25 1.7E-29 220.1 12.9 165 187-358 5-234 (253)
51 cd03218 ABC_YhbG The ABC trans 99.9 4E-24 8.8E-29 215.4 18.3 153 190-349 1-212 (232)
52 cd03301 ABC_MalK_N The N-termi 99.9 2.9E-24 6.2E-29 213.8 16.7 154 190-348 1-209 (213)
53 PRK09536 btuD corrinoid ABC tr 99.9 3.8E-24 8.1E-29 234.9 19.3 163 188-357 2-224 (402)
54 cd03224 ABC_TM1139_LivF_branch 99.9 3.7E-24 8E-29 214.0 17.4 153 190-349 1-211 (222)
55 PRK11153 metN DL-methionine tr 99.9 4.1E-24 9E-29 229.7 19.0 163 189-356 1-225 (343)
56 COG4559 ABC-type hemin transpo 99.9 1.7E-24 3.7E-29 217.4 14.7 161 189-358 1-227 (259)
57 TIGR02673 FtsE cell division A 99.9 2.8E-24 6.1E-29 214.0 16.2 153 189-347 1-214 (214)
58 cd03223 ABCD_peroxisomal_ALDP 99.9 4.3E-24 9.3E-29 206.7 17.0 151 190-347 1-164 (166)
59 PRK13641 cbiO cobalt transport 99.9 4.5E-24 9.7E-29 223.6 18.5 164 189-356 2-229 (287)
60 PRK15079 oligopeptide ABC tran 99.9 3.2E-24 7E-29 229.8 17.8 166 187-356 6-246 (331)
61 PRK13646 cbiO cobalt transport 99.9 4.9E-24 1.1E-28 223.2 18.7 165 188-356 1-230 (286)
62 TIGR03258 PhnT 2-aminoethylpho 99.9 3.2E-24 7E-29 232.5 17.9 160 189-357 5-224 (362)
63 PRK13634 cbiO cobalt transport 99.9 5.2E-24 1.1E-28 223.5 18.9 166 189-356 2-230 (290)
64 PRK10851 sulfate/thiosulfate t 99.9 5E-24 1.1E-28 230.2 19.1 160 188-356 1-221 (353)
65 PRK09452 potA putrescine/sperm 99.9 3.9E-24 8.5E-29 232.9 18.4 163 185-356 10-229 (375)
66 cd03258 ABC_MetN_methionine_tr 99.9 5.3E-24 1.2E-28 214.9 18.1 158 189-349 1-220 (233)
67 PRK11247 ssuB aliphatic sulfon 99.9 4.3E-24 9.2E-29 221.1 17.7 157 188-349 11-213 (257)
68 cd03262 ABC_HisP_GlnQ_permease 99.9 4E-24 8.7E-29 212.5 16.8 152 190-348 1-213 (213)
69 COG1123 ATPase components of v 99.9 3E-24 6.5E-29 240.4 17.7 182 188-383 4-258 (539)
70 cd03269 ABC_putative_ATPase Th 99.9 4.8E-24 1E-28 212.1 16.8 152 190-348 1-206 (210)
71 cd03214 ABC_Iron-Siderophores_ 99.9 3.7E-24 8E-29 209.1 15.5 151 191-348 1-176 (180)
72 PRK13638 cbiO cobalt transport 99.9 5.8E-24 1.2E-28 220.4 17.7 159 189-356 1-220 (271)
73 PRK09473 oppD oligopeptide tra 99.9 4.8E-24 1E-28 228.3 17.6 182 188-380 11-262 (330)
74 PRK10908 cell division protein 99.9 6.4E-24 1.4E-28 213.1 17.4 154 189-348 1-215 (222)
75 PRK11000 maltose/maltodextrin 99.9 5.6E-24 1.2E-28 230.9 18.2 159 189-356 3-218 (369)
76 cd03225 ABC_cobalt_CbiO_domain 99.9 3.8E-24 8.2E-29 212.7 15.5 151 192-347 2-211 (211)
77 PRK14250 phosphate ABC transpo 99.9 1E-23 2.2E-28 214.8 19.0 162 188-356 2-216 (241)
78 cd03263 ABC_subfamily_A The AB 99.9 8.2E-24 1.8E-28 211.5 17.9 154 190-348 1-210 (220)
79 PRK13647 cbiO cobalt transport 99.9 7.4E-24 1.6E-28 220.5 18.1 162 189-356 4-222 (274)
80 cd03292 ABC_FtsE_transporter F 99.9 5.2E-24 1.1E-28 211.8 16.0 153 190-348 1-214 (214)
81 cd03247 ABCC_cytochrome_bd The 99.9 8.6E-24 1.9E-28 205.9 17.1 153 190-348 1-174 (178)
82 cd03257 ABC_NikE_OppD_transpor 99.9 9.2E-24 2E-28 211.7 17.7 159 189-348 1-224 (228)
83 TIGR02315 ABC_phnC phosphonate 99.9 8.9E-24 1.9E-28 214.3 17.8 160 189-356 1-230 (243)
84 PRK11607 potG putrescine trans 99.9 6.7E-24 1.5E-28 231.2 18.0 160 188-356 18-234 (377)
85 PRK09493 glnQ glutamine ABC tr 99.9 1.1E-23 2.3E-28 213.8 18.3 159 189-356 1-220 (240)
86 PRK10895 lipopolysaccharide AB 99.9 1.1E-23 2.4E-28 213.8 18.5 159 189-356 3-221 (241)
87 TIGR03410 urea_trans_UrtE urea 99.9 9.9E-24 2.2E-28 212.5 17.9 158 190-356 1-216 (230)
88 PRK11264 putative amino-acid A 99.9 9.9E-24 2.1E-28 215.1 18.1 159 189-356 3-228 (250)
89 COG1123 ATPase components of v 99.9 4.4E-24 9.5E-29 239.1 16.9 186 186-383 277-533 (539)
90 cd03228 ABCC_MRP_Like The MRP 99.9 6.2E-24 1.3E-28 205.9 15.8 152 190-347 1-171 (171)
91 PRK11614 livF leucine/isoleuci 99.9 9.2E-24 2E-28 214.0 17.7 161 188-357 4-222 (237)
92 TIGR02858 spore_III_AA stage I 99.9 5.7E-24 1.2E-28 222.4 16.5 209 126-336 1-235 (270)
93 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.3E-23 2.8E-28 213.1 18.5 158 189-356 1-216 (236)
94 PRK11831 putative ABC transpor 99.9 1.1E-23 2.3E-28 218.5 18.2 160 188-356 6-228 (269)
95 PRK11231 fecE iron-dicitrate t 99.9 1.4E-23 3.1E-28 215.3 18.8 162 188-356 1-222 (255)
96 PRK11300 livG leucine/isoleuci 99.9 1.3E-23 2.9E-28 214.7 18.5 161 187-356 3-238 (255)
97 cd03256 ABC_PhnC_transporter A 99.9 1.3E-23 2.7E-28 212.7 18.0 159 190-356 1-229 (241)
98 PRK11248 tauB taurine transpor 99.9 1E-23 2.2E-28 217.4 17.6 155 189-348 1-209 (255)
99 PRK10619 histidine/lysine/argi 99.9 1.5E-23 3.2E-28 215.3 18.8 160 188-356 4-236 (257)
100 PRK11124 artP arginine transpo 99.9 1.5E-23 3.3E-28 213.0 18.6 160 188-356 1-225 (242)
101 TIGR01188 drrA daunorubicin re 99.9 6.9E-24 1.5E-28 223.6 16.5 146 207-356 6-208 (302)
102 cd03219 ABC_Mj1267_LivG_branch 99.9 1.2E-23 2.7E-28 212.3 17.7 158 190-356 1-227 (236)
103 cd03222 ABC_RNaseL_inhibitor T 99.9 1.1E-23 2.3E-28 207.7 16.7 137 193-348 4-150 (177)
104 PRK13649 cbiO cobalt transport 99.9 1.5E-23 3.2E-28 218.2 18.4 165 188-356 1-229 (280)
105 PRK13631 cbiO cobalt transport 99.9 1.5E-23 3.3E-28 223.6 19.0 168 186-357 18-261 (320)
106 cd03213 ABCG_EPDR ABCG transpo 99.9 1.6E-23 3.5E-28 207.3 17.5 158 189-348 3-190 (194)
107 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.8E-23 4E-28 212.7 18.4 159 190-356 1-220 (242)
108 cd03264 ABC_drug_resistance_li 99.9 1.4E-23 3E-28 208.9 17.1 151 190-348 1-207 (211)
109 PRK15093 antimicrobial peptide 99.9 1.7E-23 3.6E-28 223.9 18.8 165 189-356 3-243 (330)
110 cd03235 ABC_Metallic_Cations A 99.9 9.4E-24 2E-28 210.4 15.5 151 192-347 2-209 (213)
111 PRK13636 cbiO cobalt transport 99.9 2.2E-23 4.7E-28 218.0 18.8 161 188-356 4-226 (283)
112 PRK11701 phnK phosphonate C-P 99.9 2.4E-23 5.3E-28 213.9 18.9 160 188-356 5-236 (258)
113 TIGR03740 galliderm_ABC gallid 99.9 2.5E-23 5.4E-28 209.0 18.5 155 190-349 1-203 (223)
114 PRK13548 hmuV hemin importer A 99.9 2.6E-23 5.7E-28 214.3 19.0 159 189-356 2-225 (258)
115 cd03260 ABC_PstB_phosphate_tra 99.9 1.5E-23 3.3E-28 210.8 16.8 154 190-349 1-219 (227)
116 PRK13652 cbiO cobalt transport 99.9 2.3E-23 5.1E-28 217.0 18.6 160 189-356 3-222 (277)
117 TIGR02323 CP_lyasePhnK phospho 99.9 2.9E-23 6.2E-28 212.3 18.9 160 188-356 2-233 (253)
118 TIGR02211 LolD_lipo_ex lipopro 99.9 1.8E-23 3.9E-28 209.2 16.6 155 190-348 2-219 (221)
119 PRK11629 lolD lipoprotein tran 99.9 2.3E-23 5E-28 210.8 17.4 159 187-349 3-224 (233)
120 PRK09544 znuC high-affinity zi 99.9 2.9E-23 6.3E-28 213.9 18.4 160 189-356 4-204 (251)
121 TIGR00972 3a0107s01c2 phosphat 99.9 3.4E-23 7.3E-28 211.3 18.7 159 189-356 1-227 (247)
122 PRK13639 cbiO cobalt transport 99.9 2.9E-23 6.3E-28 216.0 18.4 161 189-357 1-222 (275)
123 PRK13650 cbiO cobalt transport 99.9 2.7E-23 5.7E-28 216.9 18.1 161 189-356 4-224 (279)
124 PRK13635 cbiO cobalt transport 99.9 3E-23 6.5E-28 216.7 18.3 163 186-356 2-224 (279)
125 COG4608 AppF ABC-type oligopep 99.9 1.1E-23 2.4E-28 218.3 14.8 185 188-384 3-214 (268)
126 PRK13644 cbiO cobalt transport 99.9 2.8E-23 6E-28 216.3 17.7 159 189-356 1-219 (274)
127 cd03294 ABC_Pro_Gly_Bertaine T 99.9 2E-23 4.3E-28 216.6 16.5 157 191-356 26-245 (269)
128 PRK15112 antimicrobial peptide 99.9 4.1E-23 8.8E-28 213.9 18.8 162 188-349 3-229 (267)
129 PRK14242 phosphate transporter 99.9 4.8E-23 1E-27 210.7 18.9 162 188-356 5-232 (253)
130 PRK10575 iron-hydroxamate tran 99.9 4.5E-23 9.7E-28 213.1 18.9 157 188-349 10-227 (265)
131 cd03217 ABC_FeS_Assembly ABC-t 99.9 3.8E-23 8.3E-28 205.4 17.6 153 190-349 1-184 (200)
132 TIGR03005 ectoine_ehuA ectoine 99.9 4.1E-23 8.8E-28 211.3 18.1 158 190-356 1-231 (252)
133 PRK13645 cbiO cobalt transport 99.9 4.5E-23 9.6E-28 215.9 18.8 164 189-356 6-235 (289)
134 TIGR03415 ABC_choXWV_ATP choli 99.9 2E-23 4.2E-28 227.9 16.6 148 205-356 35-249 (382)
135 TIGR03411 urea_trans_UrtD urea 99.9 5.8E-23 1.3E-27 208.5 18.9 159 189-356 2-226 (242)
136 PRK10584 putative ABC transpor 99.9 3.9E-23 8.5E-28 208.0 17.3 157 188-348 5-224 (228)
137 TIGR02769 nickel_nikE nickel i 99.9 5E-23 1.1E-27 212.8 18.3 164 189-356 2-235 (265)
138 cd03298 ABC_ThiQ_thiamine_tran 99.9 5E-23 1.1E-27 204.9 17.4 152 190-348 1-207 (211)
139 PRK10070 glycine betaine trans 99.9 4.3E-23 9.3E-28 226.4 18.5 164 189-356 4-249 (400)
140 cd03232 ABC_PDR_domain2 The pl 99.9 4.6E-23 1E-27 203.6 16.8 157 189-348 3-188 (192)
141 TIGR01978 sufC FeS assembly AT 99.9 7.2E-23 1.6E-27 207.4 18.6 160 190-356 1-229 (243)
142 PRK10253 iron-enterobactin tra 99.9 6.9E-23 1.5E-27 211.8 18.6 163 187-356 5-228 (265)
143 cd03254 ABCC_Glucan_exporter_l 99.9 7.4E-23 1.6E-27 205.8 18.2 156 189-349 2-216 (229)
144 PRK13640 cbiO cobalt transport 99.9 4.8E-23 1E-27 215.3 17.5 166 185-356 1-227 (282)
145 PRK14273 phosphate ABC transpo 99.9 7.8E-23 1.7E-27 209.5 18.6 161 189-356 7-233 (254)
146 TIGR03873 F420-0_ABC_ATP propo 99.9 7.2E-23 1.6E-27 210.2 18.3 160 190-356 2-221 (256)
147 cd03252 ABCC_Hemolysin The ABC 99.9 7.1E-23 1.5E-27 207.2 18.0 161 190-356 1-220 (237)
148 PRK15056 manganese/iron transp 99.9 4.8E-23 1E-27 213.9 17.1 163 187-356 4-225 (272)
149 TIGR01277 thiQ thiamine ABC tr 99.9 5.9E-23 1.3E-27 205.2 17.1 152 190-348 1-207 (213)
150 PRK14268 phosphate ABC transpo 99.9 8.7E-23 1.9E-27 210.0 18.7 163 185-356 8-237 (258)
151 COG4175 ProV ABC-type proline/ 99.9 2.5E-23 5.5E-28 218.7 14.7 181 189-381 4-266 (386)
152 cd03245 ABCC_bacteriocin_expor 99.9 7.5E-23 1.6E-27 204.6 17.5 155 190-348 3-216 (220)
153 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 2.6E-23 5.6E-28 210.2 14.3 152 190-348 23-220 (224)
154 PRK13633 cobalt transporter AT 99.9 8E-23 1.7E-27 213.3 18.3 165 188-357 3-229 (280)
155 PRK14247 phosphate ABC transpo 99.9 9.8E-23 2.1E-27 208.0 18.5 161 189-356 3-229 (250)
156 PRK11144 modC molybdate transp 99.9 8.1E-23 1.7E-27 220.5 18.8 156 189-356 1-213 (352)
157 PRK15439 autoinducer 2 ABC tra 99.9 5.9E-23 1.3E-27 230.8 18.3 159 189-356 11-224 (510)
158 PRK14248 phosphate ABC transpo 99.9 1.3E-22 2.8E-27 209.9 19.4 162 188-356 20-247 (268)
159 PRK10418 nikD nickel transport 99.9 1.1E-22 2.4E-27 208.9 18.7 160 189-356 4-225 (254)
160 PRK14274 phosphate ABC transpo 99.9 1.1E-22 2.4E-27 209.1 18.8 165 185-356 8-238 (259)
161 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 8.3E-23 1.8E-27 206.9 17.5 155 190-349 1-216 (238)
162 PRK09580 sufC cysteine desulfu 99.9 7.8E-23 1.7E-27 208.0 17.3 159 189-356 1-230 (248)
163 PRK10771 thiQ thiamine transpo 99.9 1.3E-22 2.9E-27 205.1 18.8 159 189-356 1-214 (232)
164 cd03267 ABC_NatA_like Similar 99.9 4.6E-23 1E-27 209.7 15.5 141 206-348 33-232 (236)
165 PRK13648 cbiO cobalt transport 99.9 7.4E-23 1.6E-27 212.0 17.2 164 185-356 3-226 (269)
166 COG0411 LivG ABC-type branched 99.9 1.1E-23 2.5E-28 215.1 10.5 163 188-359 3-237 (250)
167 PRK14267 phosphate ABC transpo 99.9 1.5E-22 3.2E-27 207.0 18.7 159 189-356 4-232 (253)
168 PRK10938 putative molybdenum t 99.9 1.1E-22 2.3E-27 227.1 19.2 159 189-356 3-219 (490)
169 cd03369 ABCC_NFT1 Domain 2 of 99.9 1.4E-22 3E-27 201.5 17.8 154 189-348 6-201 (207)
170 PRK10744 pstB phosphate transp 99.9 1.9E-22 4.1E-27 207.8 19.3 162 188-356 12-239 (260)
171 cd03297 ABC_ModC_molybdenum_tr 99.9 1.1E-22 2.3E-27 203.2 16.9 145 194-348 5-210 (214)
172 TIGR01186 proV glycine betaine 99.9 6.1E-23 1.3E-27 222.7 16.4 146 207-356 6-214 (363)
173 cd03251 ABCC_MsbA MsbA is an e 99.9 1.2E-22 2.5E-27 205.1 17.3 159 190-356 1-220 (234)
174 PRK15064 ABC transporter ATP-b 99.9 7.2E-23 1.6E-27 230.8 17.5 155 189-348 1-230 (530)
175 PRK14269 phosphate ABC transpo 99.9 1.6E-22 3.6E-27 206.4 18.5 162 188-356 1-225 (246)
176 PRK14235 phosphate transporter 99.9 1.9E-22 4.1E-27 209.0 19.0 162 186-356 16-246 (267)
177 cd03253 ABCC_ATM1_transporter 99.9 1.4E-22 3E-27 204.7 17.6 152 190-349 1-214 (236)
178 PRK14270 phosphate ABC transpo 99.9 2.3E-22 5E-27 205.7 19.1 163 187-356 2-230 (251)
179 PRK14262 phosphate ABC transpo 99.9 2.1E-22 4.4E-27 205.7 18.7 159 189-356 3-229 (250)
180 PRK09984 phosphonate/organopho 99.9 2.2E-22 4.7E-27 207.3 19.0 162 188-356 3-237 (262)
181 PRK10762 D-ribose transporter 99.9 9.1E-23 2E-27 228.6 17.5 155 188-349 3-220 (501)
182 PRK14259 phosphate ABC transpo 99.9 2.5E-22 5.5E-27 208.4 19.3 153 188-345 12-228 (269)
183 PRK13543 cytochrome c biogenes 99.9 1.2E-22 2.6E-27 203.6 16.2 151 187-344 9-211 (214)
184 PRK14256 phosphate ABC transpo 99.9 2.6E-22 5.7E-27 205.4 18.9 162 188-356 3-231 (252)
185 PRK14245 phosphate ABC transpo 99.9 2.7E-22 5.9E-27 205.0 19.0 162 188-356 2-229 (250)
186 cd03244 ABCC_MRP_domain2 Domai 99.9 2.1E-22 4.6E-27 201.5 17.9 155 190-348 3-215 (221)
187 PRK10261 glutathione transport 99.9 1.3E-22 2.8E-27 233.4 18.7 167 188-356 312-548 (623)
188 cd03300 ABC_PotA_N PotA is an 99.9 2.5E-22 5.3E-27 203.4 18.4 158 190-356 1-215 (232)
189 PRK14251 phosphate ABC transpo 99.9 2.4E-22 5.3E-27 205.3 18.5 161 189-356 4-230 (251)
190 PRK14241 phosphate transporter 99.9 2.5E-22 5.4E-27 206.4 18.7 159 189-356 4-237 (258)
191 PRK14239 phosphate transporter 99.9 3.1E-22 6.7E-27 204.3 19.1 162 188-356 4-231 (252)
192 PRK14272 phosphate ABC transpo 99.9 2.8E-22 6E-27 204.7 18.8 161 189-356 4-231 (252)
193 PRK10247 putative ABC transpor 99.9 1.5E-22 3.2E-27 204.4 16.3 150 187-344 5-211 (225)
194 PRK09700 D-allose transporter 99.9 1.1E-22 2.4E-27 228.2 17.0 162 188-356 4-229 (510)
195 TIGR02324 CP_lyasePhnL phospho 99.9 1.9E-22 4.1E-27 202.5 16.9 153 189-343 1-222 (224)
196 cd03250 ABCC_MRP_domain1 Domai 99.9 1.2E-22 2.6E-27 201.5 15.3 157 190-347 1-204 (204)
197 PRK14240 phosphate transporter 99.9 3.4E-22 7.3E-27 204.1 19.0 161 189-356 3-229 (250)
198 PRK14249 phosphate ABC transpo 99.9 3.7E-22 8E-27 204.2 19.1 161 189-356 4-230 (251)
199 COG0410 LivF ABC-type branched 99.9 1.8E-22 3.9E-27 205.0 16.5 162 188-358 2-223 (237)
200 cd03233 ABC_PDR_domain1 The pl 99.9 2.2E-22 4.7E-27 200.5 16.9 157 189-348 3-198 (202)
201 PRK13549 xylose transporter AT 99.9 1.5E-22 3.3E-27 227.0 17.6 157 188-349 4-222 (506)
202 PRK14237 phosphate transporter 99.9 3.8E-22 8.3E-27 206.6 19.1 162 188-356 19-246 (267)
203 PRK13632 cbiO cobalt transport 99.9 2.9E-22 6.2E-27 208.0 18.0 156 188-349 6-221 (271)
204 TIGR00968 3a0106s01 sulfate AB 99.9 3.1E-22 6.8E-27 203.5 17.8 158 190-356 1-215 (237)
205 cd03299 ABC_ModC_like Archeal 99.9 3.4E-22 7.4E-27 203.0 18.0 157 190-356 1-214 (235)
206 PRK13538 cytochrome c biogenes 99.9 2.3E-22 5.1E-27 199.9 16.3 148 189-343 1-202 (204)
207 PRK10261 glutathione transport 99.9 2E-22 4.4E-27 231.9 18.3 163 188-356 11-253 (623)
208 cd03248 ABCC_TAP TAP, the Tran 99.9 2.4E-22 5.3E-27 202.0 16.5 159 187-348 9-226 (226)
209 PRK10419 nikE nickel transport 99.9 3.5E-22 7.7E-27 207.2 18.2 159 189-349 3-231 (268)
210 PRK14253 phosphate ABC transpo 99.9 4.4E-22 9.6E-27 203.1 18.6 161 189-356 3-228 (249)
211 PRK13642 cbiO cobalt transport 99.9 3.2E-22 7E-27 208.4 17.9 161 189-356 4-224 (277)
212 TIGR02142 modC_ABC molybdenum 99.9 3.1E-22 6.8E-27 216.0 18.1 152 194-356 4-216 (354)
213 COG4604 CeuD ABC-type enteroch 99.9 5.9E-23 1.3E-27 204.5 11.4 161 189-358 1-222 (252)
214 TIGR03608 L_ocin_972_ABC putat 99.9 1.3E-22 2.7E-27 200.8 13.7 144 192-343 1-206 (206)
215 TIGR03269 met_CoM_red_A2 methy 99.9 3.3E-22 7.1E-27 224.9 18.8 165 188-356 278-512 (520)
216 PRK11819 putative ABC transpor 99.9 2.5E-22 5.5E-27 228.0 18.1 159 187-349 4-239 (556)
217 PRK14246 phosphate ABC transpo 99.9 4.7E-22 1E-26 205.3 18.4 163 187-356 8-236 (257)
218 PRK13546 teichoic acids export 99.9 7.3E-22 1.6E-26 205.3 20.0 165 189-357 4-228 (264)
219 CHL00131 ycf16 sulfate ABC tra 99.9 3.6E-22 7.9E-27 203.8 17.4 159 189-356 7-236 (252)
220 PRK13539 cytochrome c biogenes 99.9 3.3E-22 7.1E-27 199.5 16.6 147 188-343 1-198 (207)
221 PRK15134 microcin C ABC transp 99.9 2.9E-22 6.3E-27 225.9 18.3 161 188-349 4-236 (529)
222 PRK14255 phosphate ABC transpo 99.9 6.9E-22 1.5E-26 202.1 19.1 162 188-356 4-231 (252)
223 cd00267 ABC_ATPase ABC (ATP-bi 99.9 2.6E-22 5.6E-27 191.4 14.9 146 192-347 2-157 (157)
224 PRK14271 phosphate ABC transpo 99.9 7.3E-22 1.6E-26 206.0 19.4 164 186-356 18-246 (276)
225 PRK14238 phosphate transporter 99.9 5.6E-22 1.2E-26 206.0 18.3 163 187-356 22-250 (271)
226 PRK14265 phosphate ABC transpo 99.9 4.4E-22 9.6E-27 207.3 17.6 162 188-356 19-253 (274)
227 PRK14275 phosphate ABC transpo 99.9 6.4E-22 1.4E-26 207.4 18.8 162 186-356 36-265 (286)
228 PRK11288 araG L-arabinose tran 99.9 3.2E-22 6.9E-27 224.2 17.4 157 188-349 3-219 (501)
229 PRK13547 hmuV hemin importer A 99.9 6.7E-22 1.5E-26 206.3 18.6 161 189-356 1-239 (272)
230 PRK10636 putative ABC transpor 99.9 2.5E-22 5.5E-27 231.8 17.0 157 189-350 1-226 (638)
231 cd03231 ABC_CcmA_heme_exporter 99.9 3.8E-22 8.1E-27 198.2 15.9 147 190-343 1-198 (201)
232 PRK14243 phosphate transporter 99.9 7E-22 1.5E-26 204.4 18.4 159 189-356 10-243 (264)
233 COG1137 YhbG ABC-type (unclass 99.9 4.4E-23 9.5E-28 205.8 8.9 162 188-358 3-225 (243)
234 PRK14258 phosphate ABC transpo 99.9 8.3E-22 1.8E-26 203.3 18.7 159 189-356 7-240 (261)
235 PRK15064 ABC transporter ATP-b 99.9 4.5E-22 9.7E-27 224.4 18.0 156 188-348 318-513 (530)
236 COG4598 HisP ABC-type histidin 99.9 2.2E-22 4.8E-27 198.1 13.4 159 188-356 5-236 (256)
237 TIGR03269 met_CoM_red_A2 methy 99.9 4.6E-22 1E-26 223.7 17.9 158 190-356 1-253 (520)
238 cd03234 ABCG_White The White s 99.9 7E-22 1.5E-26 199.1 17.2 159 189-348 3-222 (226)
239 COG3840 ThiQ ABC-type thiamine 99.9 6.1E-22 1.3E-26 195.3 16.1 154 190-350 2-210 (231)
240 PRK11147 ABC transporter ATPas 99.9 4.9E-22 1.1E-26 229.1 18.1 154 189-349 3-232 (635)
241 PRK14236 phosphate transporter 99.9 1.2E-21 2.7E-26 203.4 19.2 164 186-356 22-251 (272)
242 TIGR02982 heterocyst_DevA ABC 99.9 7.1E-22 1.5E-26 198.3 16.6 155 190-348 2-219 (220)
243 cd03288 ABCC_SUR2 The SUR doma 99.9 1.5E-21 3.2E-26 201.0 19.3 162 189-356 19-238 (257)
244 PRK10982 galactose/methyl gala 99.9 4.2E-22 9E-27 222.6 16.4 157 193-356 2-218 (491)
245 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 6.1E-22 1.3E-26 224.6 18.0 158 188-349 3-237 (552)
246 TIGR02633 xylG D-xylose ABC tr 99.9 5.6E-22 1.2E-26 221.9 17.4 155 190-349 2-220 (500)
247 PRK14260 phosphate ABC transpo 99.9 1.3E-21 2.7E-26 201.6 18.6 159 189-356 7-238 (259)
248 PRK14244 phosphate ABC transpo 99.9 1.1E-21 2.4E-26 200.6 18.0 159 191-356 7-232 (251)
249 PRK10636 putative ABC transpor 99.9 6.4E-22 1.4E-26 228.4 18.0 157 187-348 310-505 (638)
250 PRK14254 phosphate ABC transpo 99.9 1.6E-21 3.4E-26 204.6 19.0 165 185-356 35-264 (285)
251 PRK14252 phosphate ABC transpo 99.9 1.8E-21 3.8E-26 201.1 19.1 161 187-356 14-244 (265)
252 TIGR02770 nickel_nikD nickel i 99.9 8E-22 1.7E-26 199.4 15.9 141 214-356 9-210 (230)
253 PRK14261 phosphate ABC transpo 99.9 1.5E-21 3.2E-26 200.0 18.0 162 188-356 5-232 (253)
254 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.5E-21 3.2E-26 204.5 18.4 160 190-356 3-220 (275)
255 PRK13545 tagH teichoic acids e 99.9 2.1E-21 4.5E-26 218.4 20.0 166 187-358 19-229 (549)
256 PRK15134 microcin C ABC transp 99.9 9.3E-22 2E-26 221.8 16.4 166 188-356 274-510 (529)
257 COG4525 TauB ABC-type taurine 99.9 7E-22 1.5E-26 196.7 13.4 155 189-348 3-213 (259)
258 TIGR01184 ntrCD nitrate transp 99.9 1.2E-21 2.6E-26 198.6 15.4 133 214-348 8-193 (230)
259 cd03290 ABCC_SUR1_N The SUR do 99.9 1.7E-21 3.7E-26 195.1 16.1 149 191-346 2-217 (218)
260 PRK09700 D-allose transporter 99.9 1.1E-21 2.4E-26 220.1 16.3 156 187-349 263-488 (510)
261 PRK14266 phosphate ABC transpo 99.9 3.6E-21 7.8E-26 196.6 18.7 159 189-356 3-229 (250)
262 PRK13549 xylose transporter AT 99.9 1.1E-21 2.3E-26 220.2 15.9 161 187-349 257-484 (506)
263 PRK10982 galactose/methyl gala 99.9 9.2E-22 2E-26 219.8 15.2 154 187-349 248-470 (491)
264 PRK14263 phosphate ABC transpo 99.9 3.9E-21 8.4E-26 198.9 18.5 160 188-356 7-240 (261)
265 COG2274 SunT ABC-type bacterio 99.9 1.1E-21 2.3E-26 228.1 16.0 162 189-356 471-691 (709)
266 cd03237 ABC_RNaseL_inhibitor_d 99.9 2E-21 4.4E-26 200.0 16.1 135 214-348 22-194 (246)
267 PRK13540 cytochrome c biogenes 99.9 1.7E-21 3.8E-26 193.1 15.1 140 189-335 1-192 (200)
268 TIGR02633 xylG D-xylose ABC tr 99.9 1.9E-21 4E-26 217.7 16.8 162 187-350 255-483 (500)
269 PRK14257 phosphate ABC transpo 99.9 5.1E-21 1.1E-25 205.1 19.2 165 189-358 80-310 (329)
270 COG1119 ModF ABC-type molybden 99.9 1.8E-21 3.9E-26 199.3 14.9 160 184-348 26-251 (257)
271 PRK11147 ABC transporter ATPas 99.9 2.9E-21 6.3E-26 222.8 17.8 160 186-350 316-518 (635)
272 COG4181 Predicted ABC-type tra 99.9 1.4E-21 3E-26 191.3 12.7 158 189-348 6-224 (228)
273 PRK14264 phosphate ABC transpo 99.9 4.7E-21 1E-25 202.7 18.0 161 189-356 45-284 (305)
274 TIGR01189 ccmA heme ABC export 99.9 2E-21 4.2E-26 192.2 13.9 143 190-341 1-196 (198)
275 TIGR01257 rim_protein retinal- 99.9 3.5E-21 7.5E-26 242.1 19.4 163 188-357 1936-2155(2272)
276 COG4161 ArtP ABC-type arginine 99.9 1.6E-21 3.4E-26 189.4 12.7 161 188-357 1-226 (242)
277 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 3.5E-21 7.5E-26 224.0 18.0 163 188-356 476-695 (710)
278 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 7.2E-21 1.6E-25 215.9 19.6 158 187-349 320-520 (552)
279 cd03291 ABCC_CFTR1 The CFTR su 99.9 8.1E-21 1.8E-25 199.6 18.6 158 189-356 39-242 (282)
280 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 5.9E-21 1.3E-25 221.4 18.7 160 189-356 451-668 (686)
281 PRK03695 vitamin B12-transport 99.9 4.1E-21 8.9E-26 197.0 15.5 143 209-356 11-217 (248)
282 COG1129 MglA ABC-type sugar tr 99.9 5.4E-21 1.2E-25 213.1 17.3 154 188-348 7-223 (500)
283 COG4586 ABC-type uncharacteriz 99.9 2.4E-21 5.2E-26 200.7 13.3 145 208-356 38-241 (325)
284 PRK15177 Vi polysaccharide exp 99.9 9.1E-21 2E-25 190.7 17.2 141 214-358 10-189 (213)
285 PLN03073 ABC transporter F fam 99.9 6.6E-21 1.4E-25 222.6 18.6 159 187-349 506-703 (718)
286 PRK11176 lipid transporter ATP 99.9 4.7E-21 1E-25 217.6 16.8 162 189-356 341-562 (582)
287 PRK11819 putative ABC transpor 99.9 1.3E-20 2.8E-25 214.2 20.4 158 187-349 322-522 (556)
288 PRK10938 putative molybdenum t 99.9 4.3E-21 9.2E-26 214.3 16.0 159 187-350 258-483 (490)
289 TIGR03771 anch_rpt_ABC anchore 99.9 1E-20 2.2E-25 191.0 16.1 140 214-356 3-196 (223)
290 COG0488 Uup ATPase components 99.9 7.8E-21 1.7E-25 214.8 16.9 158 188-351 2-231 (530)
291 COG4172 ABC-type uncharacteriz 99.9 8.1E-21 1.7E-25 204.7 15.9 186 186-382 3-260 (534)
292 TIGR01257 rim_protein retinal- 99.9 1.5E-20 3.2E-25 236.5 20.6 163 187-356 926-1144(2272)
293 PRK11174 cysteine/glutathione 99.8 1.4E-20 3E-25 214.2 18.2 160 189-356 349-567 (588)
294 PRK10790 putative multidrug tr 99.8 1.7E-20 3.7E-25 213.8 18.7 159 189-356 340-558 (592)
295 TIGR03375 type_I_sec_LssB type 99.8 1.8E-20 4E-25 217.6 19.2 162 189-356 463-683 (694)
296 TIGR00958 3a01208 Conjugate Tr 99.8 1.6E-20 3.4E-25 219.2 18.1 161 189-356 478-697 (711)
297 PRK13657 cyclic beta-1,2-gluca 99.8 2E-20 4.3E-25 213.3 18.5 161 189-356 334-553 (588)
298 TIGR01842 type_I_sec_PrtD type 99.8 2.2E-20 4.7E-25 211.3 18.6 162 189-356 316-537 (544)
299 PRK13409 putative ATPase RIL; 99.8 3E-20 6.6E-25 213.0 19.6 155 187-348 338-531 (590)
300 PRK13541 cytochrome c biogenes 99.8 1.6E-20 3.4E-25 185.6 14.7 139 189-335 1-188 (195)
301 TIGR01193 bacteriocin_ABC ABC- 99.8 2.1E-20 4.6E-25 217.5 18.0 161 189-356 473-692 (708)
302 PRK15439 autoinducer 2 ABC tra 99.8 1.6E-20 3.5E-25 211.2 16.3 151 187-349 266-482 (510)
303 TIGR01192 chvA glucan exporter 99.8 2.7E-20 5.8E-25 212.7 18.3 161 189-356 334-553 (585)
304 PRK10762 D-ribose transporter 99.8 2E-20 4.4E-25 209.7 16.8 152 188-349 256-474 (501)
305 PRK11160 cysteine/glutathione 99.8 3.1E-20 6.6E-25 211.7 18.2 163 188-356 337-557 (574)
306 PRK11288 araG L-arabinose tran 99.8 2.4E-20 5.1E-25 209.2 17.0 152 188-350 256-476 (501)
307 cd03236 ABC_RNaseL_inhibitor_d 99.8 1.9E-20 4.1E-25 194.0 14.9 149 193-348 4-216 (255)
308 COG1134 TagH ABC-type polysacc 99.8 6.8E-20 1.5E-24 187.7 18.4 153 207-363 40-238 (249)
309 TIGR01846 type_I_sec_HlyB type 99.8 4.8E-20 1E-24 214.2 18.5 160 189-356 455-675 (694)
310 KOG0055 Multidrug/pheromone ex 99.8 2.9E-20 6.2E-25 221.8 16.9 163 188-358 349-573 (1228)
311 COG4107 PhnK ABC-type phosphon 99.8 1.9E-20 4.2E-25 183.7 12.7 178 187-380 4-252 (258)
312 TIGR02203 MsbA_lipidA lipid A 99.8 5.4E-20 1.2E-24 208.2 18.1 162 189-356 330-551 (571)
313 TIGR01166 cbiO cobalt transpor 99.8 1.7E-20 3.6E-25 184.2 12.1 124 207-332 5-189 (190)
314 COG3845 ABC-type uncharacteriz 99.8 2E-20 4.3E-25 206.0 14.0 155 188-349 3-219 (501)
315 PRK10789 putative multidrug tr 99.8 5.1E-20 1.1E-24 209.6 17.9 162 189-356 313-533 (569)
316 PRK10522 multidrug transporter 99.8 7.3E-20 1.6E-24 207.3 18.7 155 189-350 322-529 (547)
317 PLN03073 ABC transporter F fam 99.8 2.4E-20 5.2E-25 217.9 14.9 158 186-349 174-420 (718)
318 cd03238 ABC_UvrA The excision 99.8 2.7E-20 5.7E-25 183.5 12.7 134 208-348 9-166 (176)
319 TIGR02204 MsbA_rel ABC transpo 99.8 8.5E-20 1.8E-24 206.9 18.1 161 189-356 337-558 (576)
320 TIGR01194 cyc_pep_trnsptr cycl 99.8 8.2E-20 1.8E-24 207.4 17.9 159 188-349 336-549 (555)
321 TIGR00954 3a01203 Peroxysomal 99.8 1E-19 2.2E-24 211.0 17.7 151 189-344 451-652 (659)
322 COG4988 CydD ABC-type transpor 99.8 1.8E-19 4E-24 201.9 18.2 165 185-356 314-538 (559)
323 PLN03211 ABC transporter G-25; 99.8 7.5E-20 1.6E-24 212.1 15.4 161 191-358 70-293 (659)
324 COG4172 ABC-type uncharacteriz 99.8 1.2E-19 2.5E-24 195.9 15.4 181 186-379 273-526 (534)
325 TIGR01187 potA spermidine/putr 99.8 8.8E-20 1.9E-24 194.9 13.7 131 222-356 1-185 (325)
326 COG1132 MdlB ABC-type multidru 99.8 2.2E-19 4.8E-24 203.9 17.6 161 188-357 327-548 (567)
327 PRK13409 putative ATPase RIL; 99.8 7.7E-20 1.7E-24 209.6 14.0 146 194-346 78-287 (590)
328 KOG0057 Mitochondrial Fe/S clu 99.8 2.3E-19 4.9E-24 199.4 16.8 160 187-356 349-569 (591)
329 TIGR02857 CydD thiol reductant 99.8 1.8E-19 3.9E-24 202.7 15.7 149 189-343 320-529 (529)
330 PRK10535 macrolide transporter 99.8 3.2E-19 6.8E-24 206.5 18.0 163 188-356 3-227 (648)
331 KOG0058 Peptide exporter, ABC 99.8 2E-19 4.4E-24 205.2 15.9 161 189-356 465-686 (716)
332 COG4987 CydC ABC-type transpor 99.8 3E-19 6.4E-24 198.3 16.6 160 189-356 336-556 (573)
333 COG4619 ABC-type uncharacteriz 99.8 1.1E-19 2.4E-24 177.5 11.4 143 205-349 14-213 (223)
334 TIGR02868 CydC thiol reductant 99.8 2E-19 4.3E-24 202.4 14.6 137 189-329 334-528 (529)
335 COG0488 Uup ATPase components 99.8 2.6E-19 5.7E-24 202.5 14.6 159 185-348 317-513 (530)
336 PLN03232 ABC transporter C fam 99.8 1E-18 2.2E-23 218.1 18.7 161 189-357 1234-1454(1495)
337 PLN03130 ABC transporter C fam 99.8 1.5E-18 3.3E-23 217.5 19.2 162 189-358 1237-1458(1622)
338 COG1101 PhnK ABC-type uncharac 99.8 6.7E-19 1.5E-23 177.7 12.7 166 189-356 1-235 (263)
339 cd02645 R3H_AAA R3H domain of 99.8 1.8E-19 3.9E-24 148.8 6.9 60 596-655 1-60 (60)
340 COG4674 Uncharacterized ABC-ty 99.8 4.5E-19 9.9E-24 176.7 9.9 160 188-356 4-230 (249)
341 PTZ00265 multidrug resistance 99.8 1.5E-18 3.3E-23 215.7 16.4 154 189-347 382-656 (1466)
342 COG4167 SapF ABC-type antimicr 99.8 6.8E-19 1.5E-23 174.0 10.1 165 190-358 5-236 (267)
343 COG4148 ModC ABC-type molybdat 99.8 1.4E-18 3E-23 180.8 12.9 132 214-350 21-209 (352)
344 PTZ00265 multidrug resistance 99.8 3.3E-18 7.1E-23 212.8 18.3 162 189-356 1165-1447(1466)
345 TIGR00955 3a01204 The Eye Pigm 99.8 2.6E-18 5.6E-23 197.9 16.0 152 206-359 37-254 (617)
346 COG0396 sufC Cysteine desulfur 99.8 5.8E-18 1.3E-22 172.2 16.3 163 188-358 2-231 (251)
347 TIGR00956 3a01205 Pleiotropic 99.8 4E-18 8.8E-23 211.4 17.9 165 189-356 759-988 (1394)
348 PTZ00243 ABC transporter; Prov 99.8 4.7E-18 1E-22 212.7 18.6 162 188-357 1307-1529(1560)
349 TIGR00957 MRP_assoc_pro multi 99.8 6E-18 1.3E-22 211.6 18.8 161 189-357 1284-1504(1522)
350 TIGR00957 MRP_assoc_pro multi 99.8 6.8E-18 1.5E-22 211.1 18.2 162 189-356 636-845 (1522)
351 cd03270 ABC_UvrA_I The excisio 99.8 7.1E-18 1.5E-22 171.4 14.9 70 278-348 138-222 (226)
352 PLN03232 ABC transporter C fam 99.8 1.1E-17 2.4E-22 209.0 18.6 163 189-356 614-823 (1495)
353 TIGR01271 CFTR_protein cystic 99.7 1.6E-17 3.5E-22 207.3 18.9 159 189-356 1217-1435(1490)
354 KOG0055 Multidrug/pheromone ex 99.7 1.3E-17 2.9E-22 199.3 16.6 161 189-356 987-1208(1228)
355 PLN03130 ABC transporter C fam 99.7 1.6E-17 3.5E-22 208.4 18.0 163 189-356 614-823 (1622)
356 PLN03140 ABC transporter G fam 99.7 2.1E-17 4.5E-22 205.4 18.5 166 189-356 867-1105(1470)
357 KOG0059 Lipid exporter ABCA1 a 99.7 1.3E-17 2.9E-22 199.0 14.7 161 188-356 563-782 (885)
358 TIGR01271 CFTR_protein cystic 99.7 2.3E-17 5.1E-22 205.9 16.2 146 208-356 440-631 (1490)
359 COG4618 ArpD ABC-type protease 99.7 5.9E-17 1.3E-21 179.1 16.1 158 189-350 334-551 (580)
360 COG4133 CcmA ABC-type transpor 99.7 1.6E-17 3.5E-22 164.7 10.2 136 189-331 2-191 (209)
361 PTZ00243 ABC transporter; Prov 99.7 8.1E-17 1.7E-21 201.7 15.8 148 207-357 673-866 (1560)
362 TIGR00956 3a01205 Pleiotropic 99.7 7.9E-17 1.7E-21 200.1 15.6 150 207-358 74-297 (1394)
363 cd03279 ABC_sbcCD SbcCD and ot 99.7 1.2E-16 2.7E-21 160.5 13.5 154 189-348 5-211 (213)
364 cd03278 ABC_SMC_barmotin Barmo 99.7 1.5E-16 3.2E-21 158.9 12.2 129 214-345 20-190 (197)
365 COG4178 ABC-type uncharacteriz 99.7 4.4E-16 9.5E-21 177.1 16.9 148 187-338 390-582 (604)
366 PLN03140 ABC transporter G fam 99.7 2.5E-16 5.4E-21 195.9 14.2 151 207-359 178-425 (1470)
367 COG4778 PhnL ABC-type phosphon 99.7 2.3E-16 5E-21 154.7 10.0 154 189-344 4-226 (235)
368 KOG0056 Heavy metal exporter H 99.7 9.5E-16 2.1E-20 168.4 14.5 162 187-357 535-757 (790)
369 KOG0061 Transporter, ABC super 99.7 9.8E-16 2.1E-20 176.7 15.3 165 189-357 25-256 (613)
370 COG4136 ABC-type uncharacteriz 99.6 1.3E-15 2.8E-20 147.1 11.8 136 189-334 2-199 (213)
371 cd03271 ABC_UvrA_II The excisi 99.6 4.3E-15 9.4E-20 155.1 15.6 70 278-348 170-255 (261)
372 KOG0062 ATPase component of AB 99.6 3.3E-16 7.1E-21 173.3 7.2 158 186-349 77-274 (582)
373 KOG0927 Predicted transporter 99.6 3.1E-15 6.7E-20 166.4 13.8 155 190-350 76-299 (614)
374 TIGR02788 VirB11 P-type DNA tr 99.6 4.3E-15 9.2E-20 158.0 14.3 221 120-348 2-270 (308)
375 cd03280 ABC_MutS2 MutS2 homolo 99.6 2.2E-15 4.8E-20 150.0 11.1 126 214-349 24-169 (200)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.6 7.7E-15 1.7E-19 148.3 14.3 68 277-345 127-204 (212)
377 cd03272 ABC_SMC3_euk Eukaryoti 99.6 7E-15 1.5E-19 149.4 14.0 67 278-345 159-235 (243)
378 KOG0054 Multidrug resistance-a 99.6 1.4E-14 3E-19 176.8 18.0 160 189-356 1138-1357(1381)
379 KOG0927 Predicted transporter 99.6 1.3E-15 2.8E-20 169.5 8.3 161 185-349 385-585 (614)
380 PF00005 ABC_tran: ABC transpo 99.6 1.6E-15 3.5E-20 140.2 6.9 91 214-306 8-137 (137)
381 cd03240 ABC_Rad50 The catalyti 99.6 7.8E-15 1.7E-19 147.2 12.3 131 214-346 20-198 (204)
382 KOG0066 eIF2-interacting prote 99.6 5.7E-15 1.2E-19 160.6 11.9 168 184-356 581-786 (807)
383 COG5265 ATM1 ABC-type transpor 99.6 1.7E-14 3.6E-19 157.1 15.0 163 185-356 258-481 (497)
384 COG1245 Predicted ATPase, RNas 99.6 8.4E-15 1.8E-19 160.5 12.3 131 214-344 364-530 (591)
385 KOG0054 Multidrug resistance-a 99.5 6.9E-14 1.5E-18 170.8 16.5 165 187-358 516-728 (1381)
386 PRK13833 conjugal transfer pro 99.5 1.3E-13 2.8E-18 148.1 16.6 224 101-335 7-255 (323)
387 PRK13894 conjugal transfer ATP 99.5 1.5E-13 3.3E-18 147.4 16.8 223 102-335 12-259 (319)
388 cd03273 ABC_SMC2_euk Eukaryoti 99.5 1.1E-13 2.3E-18 142.4 13.7 66 278-344 167-242 (251)
389 COG4170 SapD ABC-type antimicr 99.5 1.2E-14 2.5E-19 146.8 6.3 185 189-384 3-263 (330)
390 cd03275 ABC_SMC1_euk Eukaryoti 99.5 1E-13 2.2E-18 142.6 12.3 67 278-345 156-233 (247)
391 TIGR02782 TrbB_P P-type conjug 99.5 2.2E-13 4.9E-18 144.8 15.1 209 115-334 9-243 (299)
392 cd03243 ABC_MutS_homologs The 99.5 7.1E-14 1.5E-18 139.3 10.5 136 209-349 20-169 (202)
393 KOG2355 Predicted ABC-type tra 99.5 1E-13 2.2E-18 139.8 11.4 160 184-349 8-227 (291)
394 PRK13764 ATPase; Provisional 99.5 9E-13 1.9E-17 151.3 18.8 216 123-351 142-395 (602)
395 PRK13900 type IV secretion sys 99.5 7E-13 1.5E-17 143.0 15.5 214 115-334 14-274 (332)
396 COG4615 PvdE ABC-type sideroph 99.5 4E-13 8.6E-18 145.5 12.8 181 158-348 293-526 (546)
397 cd03227 ABC_Class2 ABC-type Cl 99.5 3.3E-13 7.1E-18 130.4 10.9 124 215-344 19-154 (162)
398 cd03276 ABC_SMC6_euk Eukaryoti 99.5 4.8E-13 1.1E-17 133.9 12.2 125 218-346 22-191 (198)
399 KOG0060 Long-chain acyl-CoA tr 99.4 9.4E-13 2E-17 147.8 15.4 157 187-347 431-643 (659)
400 cd03239 ABC_SMC_head The struc 99.4 5.2E-13 1.1E-17 131.7 11.7 121 219-345 24-172 (178)
401 COG1129 MglA ABC-type sugar tr 99.4 1.2E-12 2.7E-17 146.7 15.5 158 186-354 260-485 (500)
402 TIGR00630 uvra excinuclease AB 99.4 1.8E-12 3.8E-17 155.3 17.6 76 278-356 829-920 (924)
403 COG4138 BtuD ABC-type cobalami 99.4 5.5E-14 1.2E-18 138.8 3.6 140 214-358 22-218 (248)
404 PRK13851 type IV secretion sys 99.4 1.7E-12 3.6E-17 140.7 14.6 210 116-334 14-275 (344)
405 cd03283 ABC_MutS-like MutS-lik 99.4 1.6E-12 3.5E-17 130.4 12.6 126 208-336 15-154 (199)
406 TIGR02525 plasmid_TraJ plasmid 99.4 5.7E-12 1.2E-16 137.8 18.0 212 122-336 21-266 (372)
407 COG1245 Predicted ATPase, RNas 99.4 8.9E-13 1.9E-17 144.8 11.4 144 194-345 79-288 (591)
408 TIGR03819 heli_sec_ATPase heli 99.4 4.9E-12 1.1E-16 136.9 17.0 228 100-335 37-293 (340)
409 PF00437 T2SE: Type II/IV secr 99.4 8.6E-13 1.9E-17 136.7 10.5 211 116-335 4-237 (270)
410 KOG0062 ATPase component of AB 99.4 1.6E-12 3.4E-17 144.5 12.8 168 184-355 357-564 (582)
411 PRK00635 excinuclease ABC subu 99.4 3.8E-12 8.3E-17 159.3 17.7 78 278-358 810-903 (1809)
412 COG4962 CpaF Flp pilus assembl 99.4 1.2E-12 2.6E-17 140.3 11.3 225 115-370 49-299 (355)
413 TIGR01420 pilT_fam pilus retra 99.4 7E-12 1.5E-16 135.5 16.7 210 123-340 12-239 (343)
414 PRK00349 uvrA excinuclease ABC 99.4 8.1E-12 1.8E-16 149.9 17.2 76 278-356 831-922 (943)
415 KOG0065 Pleiotropic drug resis 99.3 8.5E-13 1.8E-17 158.9 6.4 166 191-359 789-1019(1391)
416 cd03285 ABC_MSH2_euk MutS2 hom 99.3 9.9E-12 2.1E-16 126.8 12.6 137 209-350 19-172 (222)
417 TIGR02524 dot_icm_DotB Dot/Icm 99.3 4.3E-11 9.3E-16 130.4 17.2 214 122-337 15-254 (358)
418 COG2805 PilT Tfp pilus assembl 99.3 1.9E-11 4.2E-16 129.0 13.4 203 123-335 15-238 (353)
419 cd03277 ABC_SMC5_euk Eukaryoti 99.3 1.4E-11 3.1E-16 124.8 10.2 70 278-347 127-211 (213)
420 KOG0064 Peroxisomal long-chain 99.3 1.5E-11 3.2E-16 137.0 10.2 156 190-350 482-689 (728)
421 cd01131 PilT Pilus retraction 99.3 3.5E-11 7.5E-16 120.4 11.9 120 218-343 2-121 (198)
422 cd03282 ABC_MSH4_euk MutS4 hom 99.2 3.2E-11 7E-16 121.7 11.0 126 209-338 18-159 (204)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.2 7.6E-11 1.7E-15 119.5 12.3 113 214-337 24-161 (213)
424 cd01130 VirB11-like_ATPase Typ 99.2 3.9E-11 8.5E-16 118.5 9.7 120 208-334 16-139 (186)
425 KOG0066 eIF2-interacting prote 99.2 1E-11 2.2E-16 135.6 5.7 168 178-350 252-489 (807)
426 COG2401 ABC-type ATPase fused 99.2 1.8E-10 3.8E-15 125.8 14.8 137 208-347 397-586 (593)
427 cd03241 ABC_RecN RecN ATPase i 99.2 1.6E-10 3.5E-15 121.0 13.5 69 278-347 171-249 (276)
428 smart00534 MUTSac ATPase domai 99.2 8.5E-11 1.8E-15 116.1 10.8 108 220-339 2-130 (185)
429 cd03284 ABC_MutS1 MutS1 homolo 99.2 1.5E-10 3.2E-15 117.6 11.3 125 218-348 31-170 (216)
430 COG0630 VirB11 Type IV secreto 99.1 2.8E-10 6.1E-15 122.0 12.8 209 118-333 20-254 (312)
431 COG3845 ABC-type uncharacteriz 99.1 5.9E-10 1.3E-14 124.0 14.8 158 187-350 255-483 (501)
432 cd01129 PulE-GspE PulE/GspE Th 99.0 1.1E-09 2.5E-14 114.6 11.6 113 215-336 78-190 (264)
433 cd03242 ABC_RecF RecF is a rec 99.0 1.5E-09 3.2E-14 113.5 11.8 70 278-348 184-269 (270)
434 PRK13695 putative NTPase; Prov 99.0 2.1E-09 4.6E-14 104.6 11.5 132 219-352 2-157 (174)
435 cd03287 ABC_MSH3_euk MutS3 hom 99.0 3.9E-09 8.4E-14 108.2 11.9 119 214-336 28-160 (222)
436 TIGR01069 mutS2 MutS2 family p 98.9 1.3E-09 2.7E-14 129.3 7.8 117 214-335 318-450 (771)
437 PRK00409 recombination and DNA 98.9 6E-09 1.3E-13 123.8 13.2 122 217-343 327-463 (782)
438 COG5008 PilU Tfp pilus assembl 98.9 7.4E-09 1.6E-13 108.2 11.6 202 126-332 20-237 (375)
439 smart00382 AAA ATPases associa 98.9 1.9E-08 4.2E-13 89.1 11.1 111 217-329 2-125 (148)
440 KOG0063 RNAse L inhibitor, ABC 98.9 6.1E-09 1.3E-13 114.4 8.7 129 216-344 366-531 (592)
441 cd01124 KaiC KaiC is a circadi 98.8 5.3E-09 1.2E-13 101.4 6.9 125 219-344 1-163 (187)
442 cd01120 RecA-like_NTPases RecA 98.8 1.2E-08 2.7E-13 94.7 9.1 114 219-333 1-140 (165)
443 TIGR02533 type_II_gspE general 98.8 1.7E-08 3.6E-13 114.3 11.7 110 216-335 241-351 (486)
444 COG1855 ATPase (PilT family) [ 98.8 9E-09 2E-13 113.5 8.3 204 122-337 147-372 (604)
445 COG2804 PulE Type II secretory 98.8 2.4E-08 5.3E-13 112.0 10.8 111 215-335 256-367 (500)
446 cd02644 R3H_jag R3H domain fou 98.8 1.4E-08 3.1E-13 85.9 6.0 57 599-656 10-67 (67)
447 PRK10436 hypothetical protein; 98.7 4.4E-08 9.6E-13 110.3 11.5 110 215-334 216-326 (462)
448 PRK08533 flagellar accessory p 98.7 6.3E-08 1.4E-12 99.5 11.1 127 189-328 7-161 (230)
449 cd03286 ABC_MSH6_euk MutS6 hom 98.7 4.9E-08 1.1E-12 99.9 9.1 120 214-337 27-160 (218)
450 TIGR02538 type_IV_pilB type IV 98.7 6.8E-08 1.5E-12 111.2 11.1 111 215-335 314-425 (564)
451 TIGR00630 uvra excinuclease AB 98.7 5E-08 1.1E-12 117.6 10.4 80 275-357 485-579 (924)
452 PRK00349 uvrA excinuclease ABC 98.7 5.3E-08 1.1E-12 117.6 10.0 82 274-358 486-582 (943)
453 PF02463 SMC_N: RecF/RecN/SMC 98.6 1.4E-07 3.1E-12 94.6 10.4 63 277-340 136-208 (220)
454 smart00393 R3H Putative single 98.6 1.1E-07 2.4E-12 82.4 8.0 64 592-655 15-78 (79)
455 KOG0065 Pleiotropic drug resis 98.6 1.3E-07 2.8E-12 115.2 9.8 149 208-359 129-349 (1391)
456 PF13304 AAA_21: AAA domain; P 98.6 8.1E-08 1.8E-12 92.6 6.4 55 279-333 238-302 (303)
457 PRK06067 flagellar accessory p 98.5 3.1E-07 6.7E-12 93.6 9.8 117 214-332 22-167 (234)
458 COG0178 UvrA Excinuclease ATPa 98.5 6.5E-07 1.4E-11 104.8 13.3 78 278-358 823-916 (935)
459 cd02325 R3H R3H domain. The na 98.5 3.3E-07 7.1E-12 72.9 6.2 57 599-655 2-59 (59)
460 PF01424 R3H: R3H domain; Int 98.4 3.3E-07 7.2E-12 75.8 5.9 59 597-655 4-62 (63)
461 PRK00635 excinuclease ABC subu 98.4 5.9E-07 1.3E-11 113.7 10.3 79 276-357 475-568 (1809)
462 cd01128 rho_factor Transcripti 98.4 1E-06 2.2E-11 92.0 9.2 138 208-348 5-211 (249)
463 PRK07721 fliI flagellum-specif 98.4 1.8E-06 3.9E-11 96.9 11.7 136 208-348 147-332 (438)
464 PTZ00132 GTP-binding nuclear p 98.3 1.4E-06 3E-11 87.2 8.3 35 282-316 157-196 (215)
465 PRK06793 fliI flagellum-specif 98.3 2.2E-06 4.8E-11 95.9 9.9 150 191-349 132-301 (432)
466 KOG0063 RNAse L inhibitor, ABC 98.3 9.2E-07 2E-11 97.6 6.4 131 214-345 97-288 (592)
467 cd00009 AAA The AAA+ (ATPases 98.2 3.6E-06 7.8E-11 75.6 8.1 102 216-331 18-131 (151)
468 TIGR00634 recN DNA repair prot 98.2 2.9E-06 6.3E-11 97.8 8.8 69 277-346 440-518 (563)
469 TIGR00618 sbcc exonuclease Sbc 98.2 3.9E-06 8.4E-11 103.1 9.3 74 274-347 947-1037(1042)
470 COG3910 Predicted ATPase [Gene 98.2 1.2E-05 2.6E-10 81.1 10.4 63 291-353 142-211 (233)
471 cd01125 repA Hexameric Replica 98.1 2.6E-06 5.5E-11 87.4 5.6 114 217-331 1-160 (239)
472 COG1618 Predicted nucleotide k 98.1 9.6E-06 2.1E-10 79.9 8.3 106 219-330 7-140 (179)
473 PRK04296 thymidine kinase; Pro 98.1 4E-05 8.7E-10 76.5 12.8 123 217-344 2-140 (190)
474 PRK10869 recombination and rep 98.1 8.6E-06 1.9E-10 93.9 9.1 69 277-346 430-508 (553)
475 PRK05399 DNA mismatch repair p 98.1 1.6E-05 3.4E-10 96.1 11.0 114 216-333 606-733 (854)
476 PRK06995 flhF flagellar biosyn 98.1 1.5E-05 3.3E-10 90.4 10.0 182 214-403 253-448 (484)
477 TIGR00416 sms DNA repair prote 98.0 1.1E-05 2.4E-10 91.0 8.1 128 214-345 91-245 (454)
478 PRK14722 flhF flagellar biosyn 98.0 3.8E-06 8.1E-11 92.6 4.2 162 214-384 134-321 (374)
479 PHA02562 46 endonuclease subun 98.0 1.2E-05 2.7E-10 91.6 8.2 74 276-350 467-557 (562)
480 PRK03918 chromosome segregatio 98.0 2.1E-05 4.6E-10 94.4 10.1 76 274-350 785-874 (880)
481 PF00488 MutS_V: MutS domain V 98.0 7.1E-05 1.5E-09 77.5 12.4 108 218-336 44-172 (235)
482 PRK13830 conjugal transfer pro 98.0 7.9E-05 1.7E-09 89.7 14.4 56 293-348 650-722 (818)
483 PTZ00454 26S protease regulato 97.9 2.5E-05 5.4E-10 86.8 8.8 101 214-333 176-297 (398)
484 PRK11823 DNA repair protein Ra 97.9 3E-05 6.6E-10 87.3 8.9 126 214-343 77-229 (446)
485 TIGR03881 KaiC_arch_4 KaiC dom 97.9 6.9E-05 1.5E-09 75.9 10.2 39 214-254 17-56 (229)
486 PRK01156 chromosome segregatio 97.9 5E-05 1.1E-09 91.8 10.1 76 275-351 799-891 (895)
487 cd01121 Sms Sms (bacterial rad 97.8 5.2E-05 1.1E-09 83.7 9.3 112 214-329 79-209 (372)
488 PF00004 AAA: ATPase family as 97.8 3.9E-05 8.5E-10 69.5 6.9 68 220-306 1-69 (132)
489 PRK14088 dnaA chromosomal repl 97.8 2.8E-05 6E-10 87.4 7.1 128 219-361 132-270 (440)
490 PRK09183 transposase/IS protei 97.8 2.3E-05 4.9E-10 82.2 5.9 40 214-254 99-138 (259)
491 cd00820 PEPCK_HprK Phosphoenol 97.8 1.7E-05 3.7E-10 73.2 4.3 30 209-238 4-36 (107)
492 PRK10246 exonuclease subunit S 97.8 4.5E-05 9.8E-10 94.0 9.0 73 274-346 946-1033(1047)
493 TIGR00606 rad50 rad50. This fa 97.8 3.8E-05 8.3E-10 96.6 7.6 62 277-338 1199-1278(1311)
494 TIGR03238 dnd_assoc_3 dnd syst 97.8 2.1E-05 4.6E-10 88.9 4.3 45 208-255 20-67 (504)
495 PTZ00361 26 proteosome regulat 97.7 0.00011 2.4E-09 82.6 9.6 102 214-334 214-336 (438)
496 PF13173 AAA_14: AAA domain 97.7 0.00028 6.2E-09 65.6 10.7 112 217-350 2-116 (128)
497 PRK10416 signal recognition pa 97.7 5.6E-05 1.2E-09 81.7 6.7 92 215-307 112-208 (318)
498 PRK00064 recF recombination pr 97.7 0.00011 2.5E-09 80.4 8.7 73 276-348 272-359 (361)
499 PRK06893 DNA replication initi 97.7 0.00029 6.4E-09 72.2 11.0 87 218-330 40-134 (229)
500 TIGR01243 CDC48 AAA family ATP 97.7 0.00013 2.7E-09 86.9 9.3 72 214-304 209-280 (733)
No 1
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.2e-44 Score=364.69 Aligned_cols=281 Identities=38% Similarity=0.561 Sum_probs=256.2
Q ss_pred HHHHHHHHHcHHHHHHHHhhccCCCCeEEEEEeCCCceEEecCCCceeeccccCCHHHHHHHHHHHhccc-----ccCCC
Q 005344 99 IELELFLELLPSRMRRELCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS-----DDNRS 173 (701)
Q Consensus 99 ~~l~~ll~~LP~~ir~~l~~~~~~~~l~EI~L~~GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs-----~d~R~ 173 (701)
+++++++++||+.|++.|+++|++.+|+||++++|||++++|++...+++..++|.+|+++++++++.|| +++|+
T Consensus 1 ~dleei~~iLPe~i~~~l~~~p~~~~l~Evri~v~Rp~e~~~~~~~vyl~~~~vT~ed~~~~~~rls~ysiys~e~elr~ 80 (308)
T COG3854 1 DDLEEIFSILPEKIRQILKEIPDRNNLEEVRIRVNRPLEAIFPGQPVYLSYIGVTKEDLQKTLNRLSGYSIYSVEEELRA 80 (308)
T ss_pred CCHHHHHHhChHHHHHHHHhCCccccceeeEeecCCCceEecCCCceecccccccHHHHHHHHHHhcccccccchhhhhc
Confidence 3688999999999999999999999999999999999999999999999999999999999999999766 67899
Q ss_pred cc--ccccchhhhhccceEE---------EEeEEEEECcccccccc-eeccccccCCE-EEEEcCCCCcHHHHHHHHHhc
Q 005344 174 GI--DRSLHRISAIRNRKMQ---------VIGLTCRVGRAVAGSAE-IICDLVEGGGS-ILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 174 Gi--~rtghRIs~ir~~~Ie---------I~nLs~rygr~v~G~~~-~L~dlI~~Gei-ilIIGPNGSGKTTLLR~IaGl 240 (701)
|+ .++||||+..++..++ |.++++|+++.+.|+.. +++++.+.|.. ++|+||||||||||||+|+++
T Consensus 81 Gyit~~ggHRVg~~g~~~~E~~~vkt~rdI~slniRv~r~v~Gt~~~li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~ 160 (308)
T COG3854 81 GYITIRGGHRVGLAGNVTLEEGKVKTIRDISSLNIRVARQVFGTANPLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARL 160 (308)
T ss_pred ceeEeeccceeeeccccccccccccceeeeceeeeeehhhhhccchHHHHHHHhcCceeeEEecCCCCChHHHHHHHHHH
Confidence 96 5999999998888888 99999999999999987 77888988976 999999999999999999999
Q ss_pred CCCC----CCcEEEEEcCCcccccC-CCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHH
Q 005344 241 LADD----HMKRVVIVDTSNEIGGD-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST 315 (701)
Q Consensus 241 Lsp~----~GkrViiVd~~~EIa~~-~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~ 315 (701)
++.. .+++|++||+++||+++ ...|+.++ .+++++.+.+.|+.+|++++.+|+|+|||+||+++.+|+.+..+
T Consensus 161 ~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~--g~R~dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~t 238 (308)
T COG3854 161 LSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGR--GRRMDVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILT 238 (308)
T ss_pred hhccccccCCceEEEEeccchhhccccCCchhhh--hhhhhhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHH
Confidence 9877 57899999999999885 44555544 45999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHHHhhhhHHHHhhccCCCcceeeeee
Q 005344 316 IAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEM 382 (701)
Q Consensus 316 l~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a~~r~~qe~Iler~~~p~f~~~vev 382 (701)
+.++|+++|.|+|+..+.+.+.+|++..+. +++.++.+++.+++++.+++.+.+..+++|....+.
T Consensus 239 a~~~GVkli~TaHG~~iedl~krp~lkdlv-~i~af~r~~elsrr~g~g~v~~ird~~~~~~~~~~g 304 (308)
T COG3854 239 ALHAGVKLITTAHGNGIEDLIKRPTLKDLV-EIQAFDRGIELSRRRGPGTVVLIRDAPPNFKERVEG 304 (308)
T ss_pred HHhcCcEEEEeeccccHHHhhcChhHHHHH-hhhHHHHHHHHhhccCCCeEEEEecCCCcHHHHhhh
Confidence 999999999999999999999999998877 677788899999988888888888888888765544
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=3.1e-30 Score=259.31 Aligned_cols=160 Identities=24% Similarity=0.382 Sum_probs=131.7
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------- 257 (701)
+|+++||+|+||. ..+|+++ |.+|++++|+||+|||||||||||+++..+++|. +++++...
T Consensus 2 mi~i~~l~K~fg~-----~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~--I~i~g~~~~~~~~~~~ 74 (240)
T COG1126 2 MIEIKNLSKSFGD-----KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGS--ITVDGEDVGDKKDILK 74 (240)
T ss_pred eEEEEeeeEEeCC-----eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCce--EEECCEeccchhhHHH
Confidence 6899999999994 5899998 9999999999999999999999999999999998 77776321
Q ss_pred ----cc----cCCCCCCCCCc--------------hh----------hhc----------cCCChhHHHHHHHHHHHccC
Q 005344 258 ----IG----GDGDVPHSGIG--------------RA----------RRM----------QVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 258 ----Ia----~~~~ip~~~ig--------------~~----------rr~----------~v~s~G~qQRV~IArAL~~~ 295 (701)
++ ....+||..+. .. .+. .-+|+|+||||+|||||+++
T Consensus 75 ~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 75 LRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred HHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCC
Confidence 11 12345554110 00 011 12478999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHH-------HHHhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 296 PETIIIDEIGTELEALAAS-------TIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~-------~l~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
|+++++|||||+|||+... .+++.|.|+|++||++.++..++|+++.|..|.+ +..++++
T Consensus 155 P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~i--ie~g~p~ 221 (240)
T COG1126 155 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKI--IEEGPPE 221 (240)
T ss_pred CCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEE--EEecCHH
Confidence 9999999999999999884 4488999999999999999999999999999988 6566653
No 3
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.96 E-value=1.6e-29 Score=261.71 Aligned_cols=163 Identities=22% Similarity=0.324 Sum_probs=133.2
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
++++++||+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|+++|..|.
T Consensus 1 ~~L~~~~ls~~y~~-----~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 1 MMLEVENLSFGYGG-----KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred CeeEEEEEEEEECC-----eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 36789999999983 5799999 8999999999999999999999999999998874
Q ss_pred -EEEEEcCCcccc---------cCCCCCCCCCch-----------------------hhhccCCChhHHHHHHHHHHHcc
Q 005344 248 -RVVIVDTSNEIG---------GDGDVPHSGIGR-----------------------ARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 -rViiVd~~~EIa---------~~~~ip~~~ig~-----------------------~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
+++|++|..... ..+..|+.++-. .+.+.-.|+|++|||+||+||++
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ 155 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ 155 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc
Confidence 456666553221 224445432211 02234468899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 295 MPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
+|++|++||||+.||...+.++ .+.|.|+|+++||.+.+..+||+++.|.+|++ +..|.++
T Consensus 156 ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i--~a~G~p~ 224 (258)
T COG1120 156 ETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKI--VAQGTPE 224 (258)
T ss_pred CCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeE--EeecCcc
Confidence 9999999999999999998543 36699999999999999999999999999999 6677763
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=1.4e-27 Score=244.84 Aligned_cols=159 Identities=20% Similarity=0.316 Sum_probs=131.6
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------- 257 (701)
|+++.|++|+|+ ...+++++ |++|++++++||+||||||+||+|.+++.|++|+ +++++.+-
T Consensus 1 MI~~~nvsk~y~-----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~--I~i~g~~i~~~d~~~L 73 (309)
T COG1125 1 MIEFENVSKRYG-----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE--ILIDGEDISDLDPVEL 73 (309)
T ss_pred CceeeeeehhcC-----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCce--EEECCeecccCCHHHH
Confidence 578999999998 35789988 9999999999999999999999999999999998 77776531
Q ss_pred ---c----ccCCCCCCCCC-------------chh---------------------hhc-cCCChhHHHHHHHHHHHccC
Q 005344 258 ---I----GGDGDVPHSGI-------------GRA---------------------RRM-QVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 258 ---I----a~~~~ip~~~i-------------g~~---------------------rr~-~v~s~G~qQRV~IArAL~~~ 295 (701)
| +..+.+||..+ ... .++ .-+|+|+||||.++|||+.+
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 2 22356676421 111 011 12478999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 296 PETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++|++|||+++||+..+..+ ++-|.|+|++|||++++-.++|++++|..|++.+ .+.+
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q--~~~P 220 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQ--YDTP 220 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEE--eCCH
Confidence 999999999999999998655 4569999999999999999999999999999955 4444
No 5
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.5e-27 Score=241.63 Aligned_cols=163 Identities=21% Similarity=0.314 Sum_probs=129.1
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc---------------EE
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK---------------RV 249 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk---------------rV 249 (701)
++++++||+++|+. . .+|+++ +.+|++++|+||||||||||+|+|+|++.|..|+ +|
T Consensus 3 ~~i~v~nl~v~y~~----~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~I 77 (254)
T COG1121 3 PMIEVENLTVSYGN----R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRI 77 (254)
T ss_pred cEEEEeeeEEEECC----E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeE
Confidence 56899999999983 2 599999 8999999999999999999999999999998762 57
Q ss_pred EEEcCCccccc-----------CCCCCCCC---------------------Cch--hhhccCCChhHHHHHHHHHHHccC
Q 005344 250 VIVDTSNEIGG-----------DGDVPHSG---------------------IGR--ARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 250 iiVd~~~EIa~-----------~~~ip~~~---------------------ig~--~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
+||+|..++.. ++...+.+ +.. .++++-+|+||+|||.|||||+.+
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~ 157 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQN 157 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccC
Confidence 77777643321 11111111 000 134455789999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 296 PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
|++|+||||++++|+..+..+ ++.|+||++++||++.+..++|+++.++..-+ ..|+++.
T Consensus 158 p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~---~~G~~~~ 224 (254)
T COG1121 158 PDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI---ASGPPEE 224 (254)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeE---eccChhh
Confidence 999999999999999998554 55699999999999999999999999865443 3455533
No 6
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.7e-27 Score=241.62 Aligned_cols=151 Identities=22% Similarity=0.335 Sum_probs=121.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc------ccc
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN------EIG 259 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~------EIa 259 (701)
.+.++++++.|+. ..+|+++ |.+||+++|+||+|||||||||+|+|+..|+.|. +.+++.. +++
T Consensus 3 ~l~i~~v~~~f~~-----~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~--V~~~g~~v~~p~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG-----VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE--VLLDGRPVTGPGPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc-----eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEECCcccCCCCCCEE
Confidence 5789999999984 5789998 9999999999999999999999999999999986 4554432 111
Q ss_pred cC----CCCCCC-------------------------------CCchh--hhccCCChhHHHHHHHHHHHccCCCEEEEc
Q 005344 260 GD----GDVPHS-------------------------------GIGRA--RRMQVPNVNMQHSVMIEAVENHMPETIIID 302 (701)
Q Consensus 260 ~~----~~ip~~-------------------------------~ig~~--rr~~v~s~G~qQRV~IArAL~~~PdVIILD 302 (701)
++ ..+|.. ++... +.-.-.|+||||||+||||++++|++|++|
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlD 155 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLD 155 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEc
Confidence 11 112221 00000 011125889999999999999999999999
Q ss_pred CCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCC
Q 005344 303 EIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVG 346 (701)
Q Consensus 303 EPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G 346 (701)
||+++||+.++..+ .+.+.|++++|||.+++-.++|++++|..+
T Consensus 156 EPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 156 EPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999655 567999999999999999999999999984
No 7
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.3e-27 Score=236.39 Aligned_cols=163 Identities=28% Similarity=0.373 Sum_probs=129.0
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
|+++.+|+++|+. ...+++|+ +++|++++|+|+||+||||+||+|+.++.|++|+ +++++-+
T Consensus 1 Ml~v~~l~K~y~~----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~--v~idg~d~~~~p~~vr 74 (245)
T COG4555 1 MLEVTDLTKSYGS----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGK--VTIDGVDTVRDPSFVR 74 (245)
T ss_pred CeeeeehhhhccC----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCce--EEEeecccccChHHHh
Confidence 5789999999995 34578888 8999999999999999999999999999999997 6665532
Q ss_pred -cccc----CCCCCCC-------------CCch--------------------hhhccCCChhHHHHHHHHHHHccCCCE
Q 005344 257 -EIGG----DGDVPHS-------------GIGR--------------------ARRMQVPNVNMQHSVMIEAVENHMPET 298 (701)
Q Consensus 257 -EIa~----~~~ip~~-------------~ig~--------------------~rr~~v~s~G~qQRV~IArAL~~~PdV 298 (701)
.|+- .+.+..+ ++.. .++..-.|.||||+|.||+|++|+|++
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence 1110 0111010 1110 012222466999999999999999999
Q ss_pred EEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHHH
Q 005344 299 IIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAK 359 (701)
Q Consensus 299 IILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a~ 359 (701)
||+|||++|||..+.+.+ ++.|.++|++||.+.+++.+||++++++.|.+ |..|+.++.
T Consensus 155 ~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gev--v~~gs~~~l 220 (245)
T COG4555 155 LVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEV--VLEGSIEAL 220 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcE--EEcCCHHHH
Confidence 999999999999998655 56699999999999999999999999999998 777776543
No 8
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=4.6e-27 Score=252.78 Aligned_cols=161 Identities=22% Similarity=0.331 Sum_probs=131.1
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE------ 257 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E------ 257 (701)
...+++++|+|.|+. ..+++|+ |.+||+++|+||+|||||||||+|||+..|++|+ +.+++..-
T Consensus 3 ~~~l~i~~v~k~yg~-----~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~--I~l~G~~i~~lpp~ 75 (352)
T COG3842 3 KPALEIRNVSKSFGD-----FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGE--ILLDGEDITDVPPE 75 (352)
T ss_pred CceEEEEeeeeecCC-----eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEECCEECCCCChh
Confidence 356899999999993 4789988 9999999999999999999999999999999997 66665421
Q ss_pred ---cc----cCCCCCCCCCchh----------------------------------hhccCCChhHHHHHHHHHHHccCC
Q 005344 258 ---IG----GDGDVPHSGIGRA----------------------------------RRMQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 258 ---Ia----~~~~ip~~~ig~~----------------------------------rr~~v~s~G~qQRV~IArAL~~~P 296 (701)
++ .+..+||+.+... ++-.-.|+|+||||+|||||+.+|
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P 155 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEP 155 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCc
Confidence 11 1244566532110 001114789999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 297 ETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++|++|||.++||..-+..+ .+.|+|.|++|||..++..++|++.+|..|+|+++ |.+
T Consensus 156 ~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~--gtP 221 (352)
T COG3842 156 KVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQV--GTP 221 (352)
T ss_pred chhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeec--CCH
Confidence 99999999999999988555 46699999999999999999999999999999664 444
No 9
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.6e-26 Score=235.94 Aligned_cols=164 Identities=19% Similarity=0.253 Sum_probs=128.4
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccc------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEI------ 258 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EI------ 258 (701)
++++++||++.|++.. ....+++++ +.+||+++|+|++|||||||+|+|+|+.+|+.|. +.+++..-.
T Consensus 2 ~~l~v~nl~~~y~~~~-~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~--I~~~G~~~~~~~~~~ 78 (252)
T COG1124 2 TLLSVRNLSIVYGGGK-FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS--ILLDGKPLAPKKRAK 78 (252)
T ss_pred ceEEEeceEEEecCCc-chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCce--EEECCcccCccccch
Confidence 5789999999998541 111589998 8999999999999999999999999999999998 777763211
Q ss_pred ------ccC------CCCCCC-----------------------------CCch--hhh-ccCCChhHHHHHHHHHHHcc
Q 005344 259 ------GGD------GDVPHS-----------------------------GIGR--ARR-MQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 259 ------a~~------~~ip~~-----------------------------~ig~--~rr-~~v~s~G~qQRV~IArAL~~ 294 (701)
+.. ..-|.. ++.. .++ -.-.|+|++||++|||||..
T Consensus 79 ~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~ 158 (252)
T COG1124 79 AFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP 158 (252)
T ss_pred hhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc
Confidence 100 000111 0100 011 11257899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+||||++||+..+..+ +++|.|.|++|||+.++..+||++++|.+|.+ |+.+..
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~i--vE~~~~ 226 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQI--VEIGPT 226 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeE--EEeech
Confidence 9999999999999999988655 56799999999999999999999999999999 545444
No 10
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.3e-26 Score=239.99 Aligned_cols=165 Identities=22% Similarity=0.325 Sum_probs=129.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------- 257 (701)
+|++++++|.|.....+...+++++ |++|++++|+|.+|+|||||+|+|.++..|++|+ ++|++.+-
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~--v~v~G~di~~l~~~~L 78 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGS--VFVDGQDLTALSEAEL 78 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCce--EEEcCEecccCChHHH
Confidence 5789999999985422345689998 9999999999999999999999999999999997 66666321
Q ss_pred ------cccC----------------------CCCCCC-------------CCch-hhhc-cCCChhHHHHHHHHHHHcc
Q 005344 258 ------IGGD----------------------GDVPHS-------------GIGR-ARRM-QVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 258 ------Ia~~----------------------~~ip~~-------------~ig~-~rr~-~v~s~G~qQRV~IArAL~~ 294 (701)
|+.. ...+.. ++.. .+++ .-.|+|+||||+|||||+.
T Consensus 79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~ 158 (339)
T COG1135 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALAN 158 (339)
T ss_pred HHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhc
Confidence 1100 000000 1100 0011 1247899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 295 MPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
+|++|++||+||+|||.....+ ++.|.||+++||.|+.+..+||++.+|..|++ |+.|+..
T Consensus 159 ~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~l--vE~G~v~ 227 (339)
T COG1135 159 NPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRL--VEEGTVS 227 (339)
T ss_pred CCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEE--EEeccHH
Confidence 9999999999999999998655 56799999999999999999999999999999 7676653
No 11
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.94 E-value=4.5e-26 Score=241.23 Aligned_cols=164 Identities=21% Similarity=0.283 Sum_probs=126.2
Q ss_pred ccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc---------------
Q 005344 186 RNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK--------------- 247 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk--------------- 247 (701)
...++++++|+++|+. ..+|+++ |.+|++++|+||||||||||+++|+|++.|++|+
T Consensus 4 ~~~~i~i~~l~k~~~~-----~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 4 SVAPIDFRNVEKRYGD-----KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHA 78 (306)
T ss_pred CCceEEEEeEEEEECC-----eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHH
Confidence 4457899999999983 4689998 8999999999999999999999999999999885
Q ss_pred --EEEEEcCCcccccC----------C---CCCC-------------CCCch--hhhccCCChhHHHHHHHHHHHccCCC
Q 005344 248 --RVVIVDTSNEIGGD----------G---DVPH-------------SGIGR--ARRMQVPNVNMQHSVMIEAVENHMPE 297 (701)
Q Consensus 248 --rViiVd~~~EIa~~----------~---~ip~-------------~~ig~--~rr~~v~s~G~qQRV~IArAL~~~Pd 297 (701)
+|+++.+...+... . ..+. .++.. .+...-.|+||+||++||+|++++|+
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCC
Confidence 23333332111000 0 0000 00000 01122357899999999999999999
Q ss_pred EEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 298 TIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 298 VIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||+||||++||+.++..+ ++.|.|||++||+++++..+||+++++.+|++ +..++.
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i--~~~g~~ 222 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRK--IAEGAP 222 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEECCH
Confidence 9999999999999998554 45699999999999999999999999999999 545555
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=5.5e-26 Score=239.68 Aligned_cols=162 Identities=23% Similarity=0.312 Sum_probs=125.0
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------E
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-----------------R 248 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-----------------r 248 (701)
.+++.+|+++|+. ...+|+++ +++|++++|+||||||||||||+|+|++.|++|+ +
T Consensus 4 ~i~~~~l~k~~~~----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ 79 (293)
T COG1131 4 VIEVRNLTKKYGG----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRR 79 (293)
T ss_pred eeeecceEEEeCC----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhh
Confidence 4678999999983 24789998 9999999999999999999999999999999885 2
Q ss_pred EEEEcCCcccc-------------cCCCCC-------------CCCCch--hhhccCCChhHHHHHHHHHHHccCCCEEE
Q 005344 249 VVIVDTSNEIG-------------GDGDVP-------------HSGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETII 300 (701)
Q Consensus 249 ViiVd~~~EIa-------------~~~~ip-------------~~~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVII 300 (701)
|+|+.+....- .....+ ..++.. .++..-.|.|||||++||.+|+++|+++|
T Consensus 80 igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lli 159 (293)
T COG1131 80 IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLI 159 (293)
T ss_pred eEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 33333332110 000000 001111 11223357899999999999999999999
Q ss_pred EcCCCCcccHHHHHHH-------HhcC-CEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 301 IDEIGTELEALAASTI-------AQRG-VQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 301 LDEPtsgLD~~a~~~l-------~e~G-vtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||||+|||+.++..+ ++.| +||++|||.++.++.+||+++++.+|++ +..++.
T Consensus 160 LDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~--~~~g~~ 221 (293)
T COG1131 160 LDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKI--IAEGTP 221 (293)
T ss_pred ECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEE--EEeCCH
Confidence 9999999999998554 5556 8999999999999999999999999999 545544
No 13
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.94 E-value=3.9e-26 Score=244.47 Aligned_cols=160 Identities=21% Similarity=0.328 Sum_probs=128.5
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
.+++++||+++||.. .+++++ |++||+++|+||||||||||||+|||+..|++|. +++++..
T Consensus 2 ~~i~l~~v~K~yg~~-----~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~--I~i~g~~vt~l~P~~ 74 (338)
T COG3839 2 AELELKNVRKSFGSF-----EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE--ILIDGRDVTDLPPEK 74 (338)
T ss_pred cEEEEeeeEEEcCCc-----eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEECCEECCCCChhH
Confidence 368899999999941 178888 9999999999999999999999999999999997 6666542
Q ss_pred -ccc----cCCCCCCCCCch-----------------------h----------hhccCCChhHHHHHHHHHHHccCCCE
Q 005344 257 -EIG----GDGDVPHSGIGR-----------------------A----------RRMQVPNVNMQHSVMIEAVENHMPET 298 (701)
Q Consensus 257 -EIa----~~~~ip~~~ig~-----------------------~----------rr~~v~s~G~qQRV~IArAL~~~PdV 298 (701)
.++ .+..+||+.+.. + +.-.-.|+|+||||+|+||++.+|++
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v 154 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKV 154 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCE
Confidence 121 123456642110 0 11122578999999999999999999
Q ss_pred EEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 299 IIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 299 IILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+++|||.++||+..+..+ ++.|.|+|++|||..++..++|++.+|.+|.|.++ |.+
T Consensus 155 ~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~--g~p 218 (338)
T COG3839 155 FLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQV--GTP 218 (338)
T ss_pred EEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeec--CCh
Confidence 999999999999988544 34699999999999999999999999999999664 444
No 14
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=9.2e-26 Score=229.86 Aligned_cols=157 Identities=18% Similarity=0.259 Sum_probs=119.3
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------------------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------- 247 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------- 247 (701)
+++.+|++.|+..... ..+|+++ |++||+++|+||+||||||||++|.|+..|++|.
T Consensus 2 i~~~~v~k~y~~~~~~-~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 2 IELKNVSKIYGLGGEK-VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred cEEeeeEEEeccCCcc-eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 5789999999743212 4688888 9999999999999999999999999999999885
Q ss_pred ---EEEEEcCCcccc-c------------CCCCCC-------------CCCchhh---hccCCChhHHHHHHHHHHHccC
Q 005344 248 ---RVVIVDTSNEIG-G------------DGDVPH-------------SGIGRAR---RMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 ---rViiVd~~~EIa-~------------~~~ip~-------------~~ig~~r---r~~v~s~G~qQRV~IArAL~~~ 295 (701)
+|++|+|.-.+- . ....+. .+++... ...-.|+|+||||+||||++++
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 233333321110 0 000000 0121111 1123588999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 296 PETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
|++|++||||.+||..+.+.+ .+.|.|+|++|||..++. +||+++.+.+|++
T Consensus 161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKI 220 (226)
T ss_pred CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence 999999999999999998654 356999999999999886 9999999999986
No 15
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.93 E-value=1.2e-25 Score=241.65 Aligned_cols=166 Identities=22% Similarity=0.304 Sum_probs=127.3
Q ss_pred hhccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------------
Q 005344 184 AIRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------- 247 (701)
Q Consensus 184 ~ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------- 247 (701)
.++..++++.||+++|+. ..+|+++ |.+|++++|+||||||||||+++|+|++.|++|.
T Consensus 36 ~~~~~~i~i~nl~k~y~~-----~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 36 SMSTVAIDLAGVSKSYGD-----KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR 110 (340)
T ss_pred cCCceeEEEEEEEEEECC-----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchH
Confidence 356667999999999983 3689998 8999999999999999999999999999999885
Q ss_pred ----EEEEEcCCccccc-C---------C---CCCC-------------CCCch--hhhccCCChhHHHHHHHHHHHccC
Q 005344 248 ----RVVIVDTSNEIGG-D---------G---DVPH-------------SGIGR--ARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 ----rViiVd~~~EIa~-~---------~---~ip~-------------~~ig~--~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
+++++++...... . . .... .++.. .+...-.|+||+||++||++++++
T Consensus 111 ~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 111 LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIND 190 (340)
T ss_pred HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 1333333211100 0 0 0000 00000 011122578999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 296 PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||+||||++||+.++..+ ++.|.|||++||+++++..+||+++++.+|++ +..++.
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i--~~~g~~ 256 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRK--IAEGRP 256 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEEcCH
Confidence 999999999999999998654 44699999999999999999999999999998 555655
No 16
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=1.4e-25 Score=228.70 Aligned_cols=162 Identities=23% Similarity=0.347 Sum_probs=128.0
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccccc---
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGG--- 260 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~--- 260 (701)
...+++++|+++|| ...+++++ |.+|++++|+||+|||||||||.|.|++.|+.|+ +.+++.+....
T Consensus 6 ~~~I~vr~v~~~fG-----~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~Ge--I~i~G~~i~~ls~~ 78 (263)
T COG1127 6 EPLIEVRGVTKSFG-----DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE--ILIDGEDIPQLSEE 78 (263)
T ss_pred cceEEEeeeeeecC-----CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCe--EEEcCcchhccCHH
Confidence 56789999999998 45789988 9999999999999999999999999999999997 66665531100
Q ss_pred --------CC--------------------------CCCCC-------------CCch--hhhc-cCCChhHHHHHHHHH
Q 005344 261 --------DG--------------------------DVPHS-------------GIGR--ARRM-QVPNVNMQHSVMIEA 290 (701)
Q Consensus 261 --------~~--------------------------~ip~~-------------~ig~--~rr~-~v~s~G~qQRV~IAr 290 (701)
++ .+|.. ++.. ...+ .-.|+||++|++|||
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 00 00000 0100 0111 124789999999999
Q ss_pred HHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 291 VENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 291 AL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
|++.+|++|++||||+||||.+...+ ..-|.|++++|||++.+..+||+++++.+|+| +..|+.+
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv--~~~Gt~~ 231 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV--IAEGTPE 231 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEE--EEeCCHH
Confidence 99999999999999999999988443 34599999999999999999999999999999 5566663
No 17
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=8.6e-26 Score=229.65 Aligned_cols=165 Identities=20% Similarity=0.307 Sum_probs=128.6
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
++|+++||++.|. +...+|+++ |.+||+++|||++|||||||||+|+|+..++.|.
T Consensus 2 ~~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr 77 (258)
T COG3638 2 MMIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77 (258)
T ss_pred ceEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHH
Confidence 5789999999995 356899998 9999999999999999999999999999999885
Q ss_pred ----EEEEEcCCccccc---------CCCCCCC-------------------------CCch--hhhccCCChhHHHHHH
Q 005344 248 ----RVVIVDTSNEIGG---------DGDVPHS-------------------------GIGR--ARRMQVPNVNMQHSVM 287 (701)
Q Consensus 248 ----rViiVd~~~EIa~---------~~~ip~~-------------------------~ig~--~rr~~v~s~G~qQRV~ 287 (701)
++++|.|...+.. .+.+.+. ++.. ..+..-+|+|+||||+
T Consensus 78 ~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVa 157 (258)
T COG3638 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVA 157 (258)
T ss_pred HHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHH
Confidence 2333333211100 0000000 0000 0123346889999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
|||+|+++|++|+.|||++.||+.+.+.+ .+.|.|+|++.|+.+++..+|++++-+..|+| |..|....
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~i--vfDg~~~e 234 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRI--VFDGPASE 234 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcE--EEeCChhh
Confidence 99999999999999999999999998544 56799999999999999999999999999999 65666533
No 18
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=2.8e-25 Score=214.37 Aligned_cols=148 Identities=20% Similarity=0.309 Sum_probs=120.1
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCC--CC
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDG--DV 264 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~--~i 264 (701)
+++++|+++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +.+++.. +.... ..
T Consensus 1 l~~~~l~~~~~~-----~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~--v~~~g~~-~~~~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFGG-----VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE--ILVDGKE-VSFASPRDA 72 (163)
T ss_pred CEEEEEEEEECC-----eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE--EEECCEE-CCcCCHHHH
Confidence 468899999973 3588887 9999999999999999999999999999999998 6666542 21110 00
Q ss_pred CCCCCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhc
Q 005344 265 PHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVK 337 (701)
Q Consensus 265 p~~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~ 337 (701)
....++. ..+ .++||+||++||++++.+|++||+|||+++||+.+++.+ .+.|.++|++||+...+..+|
T Consensus 73 ~~~~i~~--~~q-LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~ 149 (163)
T cd03216 73 RRAGIAM--VYQ-LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIA 149 (163)
T ss_pred HhcCeEE--EEe-cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 0011111 011 789999999999999999999999999999999998554 345899999999999999999
Q ss_pred CcEEEEeCCeE
Q 005344 338 NPSLQILVGGI 348 (701)
Q Consensus 338 drvlvl~~G~I 348 (701)
|+++.+.+|++
T Consensus 150 d~~~~l~~g~i 160 (163)
T cd03216 150 DRVTVLRDGRV 160 (163)
T ss_pred CEEEEEECCEE
Confidence 99999999987
No 19
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.4e-25 Score=235.00 Aligned_cols=157 Identities=24% Similarity=0.335 Sum_probs=123.7
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC------c--
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS------N-- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~------~-- 256 (701)
|+|.+.++++.|+++ .+++++ |+.|+.++++||||||||||||+|||++.|+.|+ +++++. +
T Consensus 1 m~i~i~~~~~~~~~~-----~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~--I~~~~~~l~D~~~~~ 73 (345)
T COG1118 1 MSIRINNVKKRFGAF-----GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR--IRLNGRVLFDVSNLA 73 (345)
T ss_pred Cceeehhhhhhcccc-----cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCce--EEECCEeccchhccc
Confidence 467899999999854 677777 8999999999999999999999999999999986 444433 0
Q ss_pred ----cccc----CCCCCCCCC------ch---------h----------hhcc----------CCChhHHHHHHHHHHHc
Q 005344 257 ----EIGG----DGDVPHSGI------GR---------A----------RRMQ----------VPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 257 ----EIa~----~~~ip~~~i------g~---------~----------rr~~----------v~s~G~qQRV~IArAL~ 293 (701)
.++. +..++|+.+ |. . +.++ -.|+|++|||++||||+
T Consensus 74 ~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA 153 (345)
T COG1118 74 VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALA 153 (345)
T ss_pred hhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhh
Confidence 0110 112333211 10 0 0011 14789999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEE
Q 005344 294 HMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESV 351 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V 351 (701)
-.|++|+||||+++||+..+.++ .+.|++.+++|||.+++..++|++++|.+|+|+.+
T Consensus 154 ~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqv 219 (345)
T COG1118 154 VEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQV 219 (345)
T ss_pred cCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeee
Confidence 99999999999999999998655 34499999999999999999999999999999665
No 20
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.93 E-value=4.5e-25 Score=232.71 Aligned_cols=163 Identities=21% Similarity=0.327 Sum_probs=124.1
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc----------------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK---------------- 247 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk---------------- 247 (701)
+.++++++|+++|+. ..+|+++ +.+|++++|+|||||||||||++|+|++.|++|.
T Consensus 2 ~~~i~~~~l~~~~~~-----~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 2 NVAIDLVGVSKSYGD-----KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred CcEEEEEeEEEEeCC-----eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 457899999999973 3689988 8999999999999999999999999999998875
Q ss_pred -EEEEEcCCccccc-C---------C---CCCC-------------CCCch--hhhccCCChhHHHHHHHHHHHccCCCE
Q 005344 248 -RVVIVDTSNEIGG-D---------G---DVPH-------------SGIGR--ARRMQVPNVNMQHSVMIEAVENHMPET 298 (701)
Q Consensus 248 -rViiVd~~~EIa~-~---------~---~ip~-------------~~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdV 298 (701)
+++++.+...+.. . . .... .++.. .+...-.|+||+||++||++++++|++
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL 156 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1233332211100 0 0 0000 00000 011122578999999999999999999
Q ss_pred EEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 299 IIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 299 IILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||+||||++||+.++..+ ++.|.|||++||+.+++..+||+++.+.+|++ +..++.
T Consensus 157 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 219 (303)
T TIGR01288 157 LILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRK--IAEGRP 219 (303)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEEcCH
Confidence 999999999999998554 44699999999999999999999999999998 445554
No 21
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=1.3e-25 Score=229.26 Aligned_cols=165 Identities=22% Similarity=0.316 Sum_probs=132.8
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-------c
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------E 257 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------E 257 (701)
+++++.+|+++||. ..+++++ +++|++++++|+|||||||++|+|.|++.|+.|+ +.+++.. .
T Consensus 1 ~~L~ie~vtK~Fg~-----k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~--I~~~g~~~~~~~~~r 73 (300)
T COG4152 1 MALEIEGVTKSFGD-----KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGE--ITWNGGPLSQEIKNR 73 (300)
T ss_pred CceEEecchhccCc-----eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCce--EEEcCcchhhhhhhh
Confidence 46889999999984 5789998 8999999999999999999999999999999997 5665532 2
Q ss_pred cccC----CCCCCCC-------------------------------Cch--hhhccCCChhHHHHHHHHHHHccCCCEEE
Q 005344 258 IGGD----GDVPHSG-------------------------------IGR--ARRMQVPNVNMQHSVMIEAVENHMPETII 300 (701)
Q Consensus 258 Ia~~----~~ip~~~-------------------------------ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVII 300 (701)
|++. +.+|... +.. .++..-++.|+||++.+..+++|.|++||
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlI 153 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLI 153 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEE
Confidence 3222 2222211 000 01222346799999999999999999999
Q ss_pred EcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHHHhh
Q 005344 301 IDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKR 361 (701)
Q Consensus 301 LDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a~~r 361 (701)
||||++||||.+.+.+ ++.|.|||+++|-|+-++.+||+++++..|.. |..|+.+..++
T Consensus 154 LDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~--V~~G~v~~ir~ 219 (300)
T COG4152 154 LDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQT--VLYGTVEDIRR 219 (300)
T ss_pred ecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCce--EEeccHHHHHH
Confidence 9999999999988543 78899999999999999999999999999987 77888765544
No 22
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=5.7e-25 Score=225.79 Aligned_cols=163 Identities=22% Similarity=0.307 Sum_probs=126.8
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
+++++.+++++|+. ...+++++ +.+|+.++|+|+||||||||++.++|++.|+.|.
T Consensus 2 ~~i~~~~l~~~y~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~ 77 (235)
T COG1122 2 RMIEAENLSFRYPG----RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLEL 77 (235)
T ss_pred ceEEEEEEEEEcCC----CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHh
Confidence 46889999999974 25788888 8999999999999999999999999999999886
Q ss_pred --EEEEEcCCcccccCC---------CCCCCCCch--------------------hhhccCCChhHHHHHHHHHHHccCC
Q 005344 248 --RVVIVDTSNEIGGDG---------DVPHSGIGR--------------------ARRMQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 248 --rViiVd~~~EIa~~~---------~ip~~~ig~--------------------~rr~~v~s~G~qQRV~IArAL~~~P 296 (701)
+|++|.|..+-+... .....++.. .+...-+|+|++|||+||.+|+++|
T Consensus 78 ~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P 157 (235)
T COG1122 78 RQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGP 157 (235)
T ss_pred hcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCC
Confidence 133333332211100 000011111 0112235889999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH-------Hhc-CCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 297 ETIIIDEIGTELEALAASTI-------AQR-GVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l-------~e~-GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++||+||||++||+..++.+ .+. |.|+|++||+++.+..+||+++++.+|++ +..|++
T Consensus 158 ~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i--~~~g~p 223 (235)
T COG1122 158 EILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI--LADGDP 223 (235)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEE--eecCCH
Confidence 99999999999999998655 333 79999999999999999999999999999 666765
No 23
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=9.5e-25 Score=220.88 Aligned_cols=158 Identities=23% Similarity=0.328 Sum_probs=119.9
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
++++||+++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|. +.+++.+
T Consensus 1 l~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~--i~~~g~~~~~~~~~~~~ 73 (235)
T cd03261 1 IELRGLTKSFGG-----RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGE--VLIDGEDISGLSEAELY 73 (235)
T ss_pred CeEEEEEEEECC-----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCEEccccChhhHH
Confidence 468899999973 3688888 8999999999999999999999999999998885 3443311
Q ss_pred ----ccccCC----CCCCC--------------CCch----------hh----------hccCCChhHHHHHHHHHHHcc
Q 005344 257 ----EIGGDG----DVPHS--------------GIGR----------AR----------RMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 ----EIa~~~----~ip~~--------------~ig~----------~r----------r~~v~s~G~qQRV~IArAL~~ 294 (701)
.+++.. .++.. .... .. ...-.|+||+||++||++++.
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~ 153 (235)
T cd03261 74 RLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL 153 (235)
T ss_pred HHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 011100 00000 0000 00 111247899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+||||++||+.++..+ ++ .|.+||++||+.+.+..+||+++++.+|++ +..++.
T Consensus 154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i--~~~g~~ 221 (235)
T cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKI--VAEGTP 221 (235)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeE--EEecCH
Confidence 9999999999999999988554 33 489999999999999999999999999998 434444
No 24
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.93 E-value=6.7e-25 Score=219.05 Aligned_cols=155 Identities=17% Similarity=0.258 Sum_probs=118.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
++++++++++|+. +...+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +.+++.+
T Consensus 1 ~l~~~~l~~~~~~---~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~--i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 1 MIRFEQVSKAYPG---GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGK--IRFNGQDLTRLRGREI 75 (216)
T ss_pred CeEEEEEEEEecC---CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCEehhhcChhHH
Confidence 3789999999962 123588888 8999999999999999999999999999998886 4444321
Q ss_pred -----ccccCC----CCCCC-------------CCch----------hh----------hccCCChhHHHHHHHHHHHcc
Q 005344 257 -----EIGGDG----DVPHS-------------GIGR----------AR----------RMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 -----EIa~~~----~ip~~-------------~ig~----------~r----------r~~v~s~G~qQRV~IArAL~~ 294 (701)
.+++.. .++.. +... .. ...-.|+||+||++||++++.
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 155 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVH 155 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 011100 00000 0000 00 112247799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+|++||+||||++||+.++..+ ++.|.++|++||+.+++..+||+++.+.+|++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 156 KPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999998554 34589999999999999999999999999864
No 25
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.93 E-value=7.4e-25 Score=207.86 Aligned_cols=137 Identities=18% Similarity=0.240 Sum_probs=117.6
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCC
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~ 266 (701)
+++++++++|+. ..+++++ +.+|++++|+||||||||||+++|+|+++|+.|+ +++++...+++. ++
T Consensus 1 l~~~~l~~~~~~-----~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~--i~~~~~~~i~~~---~~ 70 (144)
T cd03221 1 IELENLSKTYGG-----KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI--VTWGSTVKIGYF---EQ 70 (144)
T ss_pred CEEEEEEEEECC-----ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceE--EEECCeEEEEEE---cc
Confidence 368899999973 2578887 8999999999999999999999999999999998 677764333211 11
Q ss_pred CCCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEE
Q 005344 267 SGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQ 342 (701)
Q Consensus 267 ~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlv 342 (701)
.+.|++||++||++++.+|+++|+|||+++||+.++..+ ++.+.++|++||+.+.+..+||++++
T Consensus 71 -----------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~~ 139 (144)
T cd03221 71 -----------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIE 139 (144)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 788999999999999999999999999999999998655 45578999999999999999999999
Q ss_pred EeCCe
Q 005344 343 ILVGG 347 (701)
Q Consensus 343 l~~G~ 347 (701)
+.+|+
T Consensus 140 l~~g~ 144 (144)
T cd03221 140 LEDGK 144 (144)
T ss_pred EeCCC
Confidence 98874
No 26
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=9.1e-25 Score=217.65 Aligned_cols=152 Identities=25% Similarity=0.350 Sum_probs=116.9
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------c
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------E 257 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------E 257 (701)
+++++++++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|. +.+++.+ .
T Consensus 1 l~~~~l~~~~~~-----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~--i~~~g~~~~~~~~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGS-----VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE--ILIDGRDVTGVPPERRN 73 (213)
T ss_pred CeeeeeEEEeCC-----eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeE--EEECCEEcCcCchhhcc
Confidence 468899999973 3688888 8999999999999999999999999999998885 3333311 0
Q ss_pred cccCC----CCCC-------------C------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEE
Q 005344 258 IGGDG----DVPH-------------S------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETII 300 (701)
Q Consensus 258 Ia~~~----~ip~-------------~------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVII 300 (701)
+++.. .++. . ++.. .+...-.|+||+||++||++++.+|++||
T Consensus 74 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ll 153 (213)
T cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLL 153 (213)
T ss_pred EEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11100 0000 0 0000 00112257899999999999999999999
Q ss_pred EcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 301 IDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 301 LDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+||||++||+.++..+ ++ .|.+||++||+.+++..+||+++.+.+|++
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 154 LDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 9999999999998554 23 489999999999999999999999999987
No 27
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1e-24 Score=235.42 Aligned_cols=160 Identities=21% Similarity=0.310 Sum_probs=125.1
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
.++++++|+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|++|+ +.+++..
T Consensus 5 ~~l~~~~l~~~~~~-----~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~--I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 5 NFVVLKNITKRFGS-----NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQ--IFIDGEDVTHRSIQQ 77 (351)
T ss_pred cEEEEEeEEEEECC-----eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE--EEECCEECCCCCHHH
Confidence 36899999999983 3578888 8999999999999999999999999999999886 4444421
Q ss_pred -ccccC----CCCCCCCC-------------ch--------------------hhhccCCChhHHHHHHHHHHHccCCCE
Q 005344 257 -EIGGD----GDVPHSGI-------------GR--------------------ARRMQVPNVNMQHSVMIEAVENHMPET 298 (701)
Q Consensus 257 -EIa~~----~~ip~~~i-------------g~--------------------~rr~~v~s~G~qQRV~IArAL~~~PdV 298 (701)
.++.. ..+|+..+ .. .+...-.|+|+|||++||++|+.+|++
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~l 157 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV 157 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 11110 11222110 00 011123578999999999999999999
Q ss_pred EEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 299 IIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 299 IILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||+|||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|.+|++. ..+++
T Consensus 158 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~--~~g~~ 221 (351)
T PRK11432 158 LLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIM--QIGSP 221 (351)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE--EEcCH
Confidence 999999999999998655 234999999999999999999999999999994 45555
No 28
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.5e-24 Score=217.44 Aligned_cols=152 Identities=23% Similarity=0.276 Sum_probs=117.3
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
++++|++++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|++|+ +.+++..
T Consensus 1 i~~~~~~~~~~~-----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~--i~~~g~~~~~~~~~~~~ 73 (220)
T cd03265 1 IEVENLVKKYGD-----FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR--ATVAGHDVVREPREVRR 73 (220)
T ss_pred CEEEEEEEEECC-----EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCEecCcChHHHhh
Confidence 468999999973 3688888 8999999999999999999999999999998885 3333311
Q ss_pred ccccCC----CCCCC-------------CC------------------ch--hhhccCCChhHHHHHHHHHHHccCCCEE
Q 005344 257 EIGGDG----DVPHS-------------GI------------------GR--ARRMQVPNVNMQHSVMIEAVENHMPETI 299 (701)
Q Consensus 257 EIa~~~----~ip~~-------------~i------------------g~--~rr~~v~s~G~qQRV~IArAL~~~PdVI 299 (701)
.+++.. ..+.. +. .. .....-.|+||+||++||++++.+|++|
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ll 153 (220)
T cd03265 74 RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVL 153 (220)
T ss_pred cEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 011000 00000 00 00 0011224789999999999999999999
Q ss_pred EEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 300 IIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 300 ILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
|+||||++||+.++..+ .+ .|.++|++||+.+.+..+||+++++.+|++
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i 210 (220)
T cd03265 154 FLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRI 210 (220)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999998554 33 389999999999999999999999999998
No 29
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.92 E-value=1e-24 Score=211.66 Aligned_cols=153 Identities=20% Similarity=0.292 Sum_probs=117.2
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccc-------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIG------- 259 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa------- 259 (701)
++++|++++|+.. ...+++++ +.+|++++|+||||||||||+++|+|++.|+.|. +.+++.+-..
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~~ 75 (173)
T cd03246 1 LEVENVSFRYPGA---EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGR--VRLDGADISQWDPNELG 75 (173)
T ss_pred CEEEEEEEEcCCC---CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCe--EEECCEEcccCCHHHHH
Confidence 4688999999731 23578887 8999999999999999999999999999999997 5666532100
Q ss_pred -cCCCCCCC-CC-chhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcC
Q 005344 260 -GDGDVPHS-GI-GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHG 329 (701)
Q Consensus 260 -~~~~ip~~-~i-g~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd 329 (701)
..+.+++. .+ ...-.-.+.|+|++||++||++++.+|++||+||||++||+.++..+ ++.|.++|++||+
T Consensus 76 ~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~ 155 (173)
T cd03246 76 DHVGYLPQDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHR 155 (173)
T ss_pred hheEEECCCCccccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 00111110 00 00001112789999999999999999999999999999999998544 4568999999999
Q ss_pred hhHHHHhcCcEEEEeCCeE
Q 005344 330 MTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 330 ~~l~~~l~drvlvl~~G~I 348 (701)
.+.+. +||+++++.+|++
T Consensus 156 ~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 156 PETLA-SADRILVLEDGRV 173 (173)
T ss_pred HHHHH-hCCEEEEEECCCC
Confidence 99885 7999999998864
No 30
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=9.8e-25 Score=211.86 Aligned_cols=151 Identities=24% Similarity=0.315 Sum_probs=118.0
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc---------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE--------- 257 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E--------- 257 (701)
+++++++++|+. ..+++++ +.+|++++|+||||||||||+++|+|+++|+.|+ +.+++...
T Consensus 1 l~~~~l~~~~~~-----~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~~ 73 (173)
T cd03230 1 IEVRNLSKRYGK-----KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE--IKVLGKDIKKEPEEVKR 73 (173)
T ss_pred CEEEEEEEEECC-----eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeE--EEECCEEcccchHhhhc
Confidence 368899999973 2578888 8999999999999999999999999999999887 55655321
Q ss_pred -cccCCCCCCC--CCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEE
Q 005344 258 -IGGDGDVPHS--GIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTA 327 (701)
Q Consensus 258 -Ia~~~~ip~~--~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTT 327 (701)
+++....+.. .......+ ..|+|++||++||++++.+|++||+|||+++||+.++..+ .+.|.++|++|
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~~-~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~t 152 (173)
T cd03230 74 RIGYLPEEPSLYENLTVRENL-KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSS 152 (173)
T ss_pred cEEEEecCCccccCCcHHHHh-hcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 1111100100 00000111 1789999999999999999999999999999999998544 44589999999
Q ss_pred cChhHHHHhcCcEEEEeCCeE
Q 005344 328 HGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 328 Hd~~l~~~l~drvlvl~~G~I 348 (701)
|+..++..+||+++.+.+|++
T Consensus 153 h~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 153 HILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999998863
No 31
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.92 E-value=1.3e-24 Score=234.14 Aligned_cols=163 Identities=20% Similarity=0.262 Sum_probs=124.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
+|+++||+++|+.. .+...+|+++ +.+|++++|+||||||||||+|+|+|+++|++|. +.+++.+
T Consensus 1 mI~~~~lsk~y~~~-~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~--I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 1 MIKLSNITKVFHQG-TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS--VIVDGQDLTTLSNSEL 77 (343)
T ss_pred CEEEEEEEEEECCC-CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE--EEECCEECCcCCHHHH
Confidence 47899999999631 1124689998 8999999999999999999999999999999886 4444421
Q ss_pred -----ccccC----CCCCCC-------------CCch----------hhhc----------cCCChhHHHHHHHHHHHcc
Q 005344 257 -----EIGGD----GDVPHS-------------GIGR----------ARRM----------QVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 -----EIa~~----~~ip~~-------------~ig~----------~rr~----------~v~s~G~qQRV~IArAL~~ 294 (701)
.+++. ..++.. ++.. ...+ .-.|+||+||++||+||+.
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 01110 000100 0000 0011 1247899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+||||++||+.+...+ .+ .|.|+|++||+++.+..+||++++|..|++ +..|+.
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~i--v~~g~~ 225 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGEL--IEQGTV 225 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCH
Confidence 9999999999999999998554 23 499999999999999999999999999999 555555
No 32
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=9.2e-25 Score=230.64 Aligned_cols=183 Identities=20% Similarity=0.291 Sum_probs=137.5
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC-CC----CC---------------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA-DD----HM--------------- 246 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs-p~----~G--------------- 246 (701)
++|+||++.|... .|...+++++ +.+||+++|+|.+|||||||.++|.|+++ +. +|
T Consensus 2 L~v~nL~v~f~~~-~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTD-AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecC-CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 6799999999742 2345789998 99999999999999999999999999997 31 23
Q ss_pred -------cEEEEEcCCcccccC-----------CCCCCCC-------------------Cchh-hhc----cCCChhHHH
Q 005344 247 -------KRVVIVDTSNEIGGD-----------GDVPHSG-------------------IGRA-RRM----QVPNVNMQH 284 (701)
Q Consensus 247 -------krViiVd~~~EIa~~-----------~~ip~~~-------------------ig~~-rr~----~v~s~G~qQ 284 (701)
++|.+|+|....+.. ....|.. +... +++ .-.|+||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 234444443211000 0000001 1000 011 014789999
Q ss_pred HHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 285 SVMIEAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 285 RV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||+||.|++.+|++||.||||++||+..+.++ .+.|.++|++|||+..+..+||++++|..|+| |+.|+.
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~i--VE~g~~ 238 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI--VEEGPV 238 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEE--EEeCCH
Confidence 99999999999999999999999999998554 45799999999999999999999999999999 878777
Q ss_pred HHHhhhhHHHHhhccCCCcceeeeeee
Q 005344 357 EAKKRKVQKTILERKGPPTFTCAVEMI 383 (701)
Q Consensus 357 ~a~~r~~qe~Iler~~~p~f~~~vev~ 383 (701)
+.++..+.+||++.++..+
T Consensus 239 --------~~i~~~P~HPYT~~Ll~s~ 257 (316)
T COG0444 239 --------EEIFKNPKHPYTRGLLNSL 257 (316)
T ss_pred --------HHHhcCCCChHHHHHHHhC
Confidence 4577888888877655544
No 33
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.6e-24 Score=234.35 Aligned_cols=159 Identities=17% Similarity=0.233 Sum_probs=123.3
Q ss_pred eEEEEeEEEEE-Ccccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 189 KMQVIGLTCRV-GRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 189 ~IeI~nLs~ry-gr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
++++++|+++| + ...+|+++ +.+|++++|+||||||||||||+|+|++.|++|+ +++++..
T Consensus 3 ~l~i~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~--I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 3 GLKLQAVRKSYDG-----KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE--IWIGGRVVNELEPAD 75 (356)
T ss_pred EEEEEeEEEEeCC-----CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE--EEECCEECCCCCHHH
Confidence 58899999999 5 24688888 8999999999999999999999999999999886 4444321
Q ss_pred -ccccC----CCCCCCC-------------------------------Cch--hhhccCCChhHHHHHHHHHHHccCCCE
Q 005344 257 -EIGGD----GDVPHSG-------------------------------IGR--ARRMQVPNVNMQHSVMIEAVENHMPET 298 (701)
Q Consensus 257 -EIa~~----~~ip~~~-------------------------------ig~--~rr~~v~s~G~qQRV~IArAL~~~PdV 298 (701)
.+++. ..+|+.. +.. .+...-.|+|||||++||||++.+|++
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~l 155 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAV 155 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 01110 1112210 000 001122578999999999999999999
Q ss_pred EEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 299 IIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 299 IILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||+|||+++||+..+..+ . +.|.|+|++||+.+++..+||++++|.+|++ +..|++
T Consensus 156 lLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i--~~~g~~ 219 (356)
T PRK11650 156 FLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVA--EQIGTP 219 (356)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE--EEECCH
Confidence 999999999999998654 2 3499999999999999999999999999999 445555
No 34
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.4e-24 Score=211.59 Aligned_cols=151 Identities=19% Similarity=0.335 Sum_probs=118.2
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc---------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE--------- 257 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E--------- 257 (701)
+++++|+++|+. ..+++++ +.+|++++|+||||||||||+++|+|+++++.|+ +.+++.+-
T Consensus 1 i~~~~l~~~~~~-----~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~~ 73 (178)
T cd03229 1 LELKNVSKRYGQ-----KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS--ILIDGEDLTDLEDELPP 73 (178)
T ss_pred CEEEEEEEEECC-----eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCEEccccchhHHH
Confidence 468899999973 3578887 8999999999999999999999999999999887 55655311
Q ss_pred ----cccCCCCCCC--CCchhhhccC-CChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hhc-CCE
Q 005344 258 ----IGGDGDVPHS--GIGRARRMQV-PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQR-GVQ 322 (701)
Q Consensus 258 ----Ia~~~~ip~~--~ig~~rr~~v-~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~-Gvt 322 (701)
+++....+.. .......+.. .|+|++||++||++++.+|++||+|||+++||+.++..+ ++. |.+
T Consensus 74 ~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~t 153 (178)
T cd03229 74 LRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT 153 (178)
T ss_pred HhhcEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 1111111111 1111112222 789999999999999999999999999999999998544 344 799
Q ss_pred EEEEEcChhHHHHhcCcEEEEeCCe
Q 005344 323 LVGTAHGMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 323 VIiTTHd~~l~~~l~drvlvl~~G~ 347 (701)
+|++||+..++..+||+++.+..|+
T Consensus 154 iii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 154 VVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999998874
No 35
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.92 E-value=1.7e-24 Score=228.33 Aligned_cols=159 Identities=21% Similarity=0.242 Sum_probs=122.8
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
.+++++++++|+. ..+|+++ +.+|++++|+|||||||||||++|+|++.|+.|+ +.+++..
T Consensus 2 ~l~~~~l~~~~~~-----~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~--i~i~g~~~~~~~~~~~ 74 (301)
T TIGR03522 2 SIRVSSLTKLYGT-----QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS--VQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEEEEEEEEECC-----EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCEEcccChHHHH
Confidence 5789999999973 4689988 9999999999999999999999999999999886 4443321
Q ss_pred -ccccCC----CCCCC-------------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCE
Q 005344 257 -EIGGDG----DVPHS-------------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPET 298 (701)
Q Consensus 257 -EIa~~~----~ip~~-------------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdV 298 (701)
.++++. .++.. ++.. .+.....|+||+||++||++++++|++
T Consensus 75 ~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (301)
T TIGR03522 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154 (301)
T ss_pred hceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 011110 00000 0000 011122578999999999999999999
Q ss_pred EEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 299 IIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 299 IILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||+||||++||+.++..+ ...+.|||++||+++++..+||+++++.+|++ +..|+.
T Consensus 155 liLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i--~~~g~~ 216 (301)
T TIGR03522 155 LILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKI--VADKKL 216 (301)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 999999999999998554 12379999999999999999999999999999 445555
No 36
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=1.5e-24 Score=212.19 Aligned_cols=150 Identities=18% Similarity=0.188 Sum_probs=117.7
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc-------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE------- 257 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E------- 257 (701)
.++++++++++| +++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +.+++.+-
T Consensus 3 ~~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~ 71 (182)
T cd03215 3 PVLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE--ITLDGKPVTRRSPRD 71 (182)
T ss_pred cEEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEECCEECCccCHHH
Confidence 368899999987 56666 8999999999999999999999999999999997 56665321
Q ss_pred -----cccCCCCC-----CCCCchhhhcc---CCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------H
Q 005344 258 -----IGGDGDVP-----HSGIGRARRMQ---VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------A 317 (701)
Q Consensus 258 -----Ia~~~~ip-----~~~ig~~rr~~---v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~ 317 (701)
+++....+ .........+. ..++||+||++||++++++|++||+|||+++||+.++..+ .
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 151 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELA 151 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHH
Confidence 11111100 00111111111 1788999999999999999999999999999999998554 3
Q ss_pred hcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 318 QRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 318 e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+.|.++|+++|+.+.+..+||+++++.+|++
T Consensus 152 ~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 152 DAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 4589999999999999999999999998864
No 37
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.8e-24 Score=231.42 Aligned_cols=165 Identities=17% Similarity=0.234 Sum_probs=124.4
Q ss_pred ceEEEEeEEEEECcccc-----cccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---
Q 005344 188 RKMQVIGLTCRVGRAVA-----GSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~-----G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--- 256 (701)
.+|+++||++.|+.... +...+|+++ |.+|++++|+|+||||||||+++|+|++.++.|. +.+++.+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~--i~~~g~~l~~ 81 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGE--LYYQGQDLLK 81 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcE--EEECCEEcCc
Confidence 46899999999963210 124689988 8999999999999999999999999999998875 3343321
Q ss_pred -----------ccccCC------CCCCC--------------------------------CCch---hhhccCCChhHHH
Q 005344 257 -----------EIGGDG------DVPHS--------------------------------GIGR---ARRMQVPNVNMQH 284 (701)
Q Consensus 257 -----------EIa~~~------~ip~~--------------------------------~ig~---~rr~~v~s~G~qQ 284 (701)
.+++.. ..|.. ++.. .+...-.|+||+|
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q 161 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ 161 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence 011000 00000 0100 0011124789999
Q ss_pred HHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 285 SVMIEAVENHMPETIIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 285 RV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||+||+++|++||+||||++||+..+..+ . +.|.++|++|||+.++..+||++++|..|+| ++.|..
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i--ve~g~~ 239 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC--VEKGTK 239 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCH
Confidence 99999999999999999999999999988544 2 3599999999999999999999999999999 666655
No 38
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.92 E-value=1.1e-24 Score=216.20 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=115.9
Q ss_pred EEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc---------------EEEEEc
Q 005344 192 VIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK---------------RVVIVD 253 (701)
Q Consensus 192 I~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk---------------rViiVd 253 (701)
++||+++|+. ...+++++ +.+|++++|+|||||||||||++|+|++.|+.|+ +++++.
T Consensus 2 ~~~l~~~~~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~ 77 (205)
T cd03226 2 IENISFSYKK----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVM 77 (205)
T ss_pred cccEEEEeCC----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEe
Confidence 6789999973 13688887 8999999999999999999999999999999885 133333
Q ss_pred CCcc--cccC------C-CCCCC--------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcc
Q 005344 254 TSNE--IGGD------G-DVPHS--------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTEL 308 (701)
Q Consensus 254 ~~~E--Ia~~------~-~ip~~--------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgL 308 (701)
+... +... . ..... ++.. .+...-.|+||+||++||++++.+|++||+||||++|
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 157 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccC
Confidence 3211 0000 0 00000 0000 0011224789999999999999999999999999999
Q ss_pred cHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 309 EALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 309 D~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
|+.++..+ ++.|.++|++||+.+.+..+||+++.+.+|++
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 158 DYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99998554 35689999999999999999999999999986
No 39
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.3e-24 Score=225.90 Aligned_cols=167 Identities=19% Similarity=0.222 Sum_probs=123.5
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.+++++|+++|+........+|+++ +.+|++++|+||||||||||+++|+|++.|+.|.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 4789999999974211123588988 8999999999999999999999999999998875
Q ss_pred --EEEEEcCCcccccC----------C----CCCC-------------CCCc--h--hhhccCCChhHHHHHHHHHHHcc
Q 005344 248 --RVVIVDTSNEIGGD----------G----DVPH-------------SGIG--R--ARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 --rViiVd~~~EIa~~----------~----~ip~-------------~~ig--~--~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
+++++.+....... . .+.. .++. . .+...-.|+||+||++||++|+.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 12333332110000 0 0000 0111 0 01112247799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
+|++||+||||++||+.++..+ ++ .|.|||++||+++++..+||+++++.+|++ +..++..
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i--~~~g~~~ 230 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKC--ELQGTPR 230 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHH
Confidence 9999999999999999998554 33 499999999999999999999999999998 4455543
No 40
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.92 E-value=2.4e-24 Score=213.95 Aligned_cols=152 Identities=22% Similarity=0.307 Sum_probs=117.8
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------c
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------E 257 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------E 257 (701)
+++++++++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|++|. +.+++.+ .
T Consensus 1 l~~~~l~~~~~~-----~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~--i~~~g~~~~~~~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGK-----KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGE--ITFDGKSYQKNIEALRR 73 (208)
T ss_pred CEEEEEEEEECC-----eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceE--EEECCCcccchHHHHhh
Confidence 468999999963 3688888 8999999999999999999999999999998885 3444321 0
Q ss_pred cccCC----CCCCC-------------CCch------hh----------hccCCChhHHHHHHHHHHHccCCCEEEEcCC
Q 005344 258 IGGDG----DVPHS-------------GIGR------AR----------RMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304 (701)
Q Consensus 258 Ia~~~----~ip~~-------------~ig~------~r----------r~~v~s~G~qQRV~IArAL~~~PdVIILDEP 304 (701)
+++.. .++.. .... .. ...-.|+|++||++||++++.+|++||+|||
T Consensus 74 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 153 (208)
T cd03268 74 IGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP 153 (208)
T ss_pred EEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 11100 00000 0000 01 1122577999999999999999999999999
Q ss_pred CCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 305 GTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 305 tsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
|++||+.++..+ ++.|.++|++||+.+.+..+||+++.+.+|++
T Consensus 154 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 154 TNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 999999998554 34689999999999999999999999999997
No 41
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.92 E-value=7.2e-25 Score=216.96 Aligned_cols=157 Identities=20% Similarity=0.264 Sum_probs=122.8
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
+|++++++++|+. ..++|+|+ |.+|+++.|+||+|||||||||.|.+...|+.|+
T Consensus 1 mI~f~~V~k~Y~~----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~ 76 (223)
T COG2884 1 MIRFENVSKAYPG----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPF 76 (223)
T ss_pred CeeehhhhhhcCC----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccch
Confidence 4789999999984 46799999 9999999999999999999999999999999986
Q ss_pred ---EEEEEcCCcccccC----C---------CCCC-------------CCCch-hhhc-cCCChhHHHHHHHHHHHccCC
Q 005344 248 ---RVVIVDTSNEIGGD----G---------DVPH-------------SGIGR-ARRM-QVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 248 ---rViiVd~~~EIa~~----~---------~ip~-------------~~ig~-~rr~-~v~s~G~qQRV~IArAL~~~P 296 (701)
+|++|+|...+-.. . +.+. .++.. .+.+ ...|+|+|||++||||++++|
T Consensus 77 LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P 156 (223)
T COG2884 77 LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQP 156 (223)
T ss_pred hhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCC
Confidence 23333332111000 0 0000 01111 0111 125789999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 297 ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
++||.||||.+||+....++ ...|.||+++|||.++++.+..+++.+.+|++.
T Consensus 157 ~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~ 216 (223)
T COG2884 157 AVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216 (223)
T ss_pred CeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEE
Confidence 99999999999999987544 677999999999999999999999999999983
No 42
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.92 E-value=2.6e-24 Score=214.82 Aligned_cols=157 Identities=23% Similarity=0.272 Sum_probs=118.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
+++++|++++|+.. .....+++++ +.+|++++|+|+||||||||+++|+|++.|++|+ +.+++.+
T Consensus 1 ~l~~~~v~~~~~~~-~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~--i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDV-KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF--ATVDGFDVVKEPAEAR 77 (218)
T ss_pred CeEEEEEEEecCCC-CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCce--EEECCEEcccCHHHHH
Confidence 36799999999731 0111588888 8999999999999999999999999999998886 3443321
Q ss_pred -ccccCC----CCCCC-------------CCch----------hh----------hccCCChhHHHHHHHHHHHccCCCE
Q 005344 257 -EIGGDG----DVPHS-------------GIGR----------AR----------RMQVPNVNMQHSVMIEAVENHMPET 298 (701)
Q Consensus 257 -EIa~~~----~ip~~-------------~ig~----------~r----------r~~v~s~G~qQRV~IArAL~~~PdV 298 (701)
.+++.. .++.. +... .. ...-.|+|++||++||++++.+|++
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 011110 00000 0000 01 1112477999999999999999999
Q ss_pred EEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 299 IIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 299 IILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
||+|||+++||+.++..+ ++.|.++|++||+.+.+..++|+++.+.+|++
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999998544 44689999999999999999999999999987
No 43
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.6e-24 Score=225.67 Aligned_cols=168 Identities=20% Similarity=0.254 Sum_probs=124.3
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
++++++++++|+....+...+|+++ |.+|++++|+||||||||||+++|+|++.|++|.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 4789999999973211123588888 9999999999999999999999999999999885
Q ss_pred ----EEEEEcCCcc--cccC--------C----CCCC-------------CCCch---hhhccCCChhHHHHHHHHHHHc
Q 005344 248 ----RVVIVDTSNE--IGGD--------G----DVPH-------------SGIGR---ARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 248 ----rViiVd~~~E--Ia~~--------~----~ip~-------------~~ig~---~rr~~v~s~G~qQRV~IArAL~ 293 (701)
+|+++.+..+ +... + ..+. .++.. .+.....|+|++||++||++++
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~ 160 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA 160 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence 1233333211 0000 0 0000 01100 0011224779999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 294 HMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
++|++||+||||++||+.++..+ ++.|.|||++||+++++..+||+++++.+|++ +..++...
T Consensus 161 ~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i--~~~g~~~~ 230 (288)
T PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHI--ISCGTPSD 230 (288)
T ss_pred hCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEECCHHH
Confidence 99999999999999999998554 44699999999999999999999999999999 55565533
No 44
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.92 E-value=2.2e-24 Score=232.95 Aligned_cols=159 Identities=20% Similarity=0.263 Sum_probs=124.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
+++++||+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|+.|+ +.+++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~--I~i~g~~~~~~~~~~r 76 (353)
T TIGR03265 4 YLSIDNIRKRFGA-----FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGT--IYQGGRDITRLPPQKR 76 (353)
T ss_pred EEEEEEEEEEeCC-----eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceE--EEECCEECCCCCHHHC
Confidence 5889999999983 3578887 8899999999999999999999999999999886 4444421
Q ss_pred ccccC----CCCCCCCCc-------------h--------------------hhhccCCChhHHHHHHHHHHHccCCCEE
Q 005344 257 EIGGD----GDVPHSGIG-------------R--------------------ARRMQVPNVNMQHSVMIEAVENHMPETI 299 (701)
Q Consensus 257 EIa~~----~~ip~~~ig-------------~--------------------~rr~~v~s~G~qQRV~IArAL~~~PdVI 299 (701)
.+++. ..+|+..+. . .+...-.|+|||||++||++|+.+|++|
T Consensus 77 ~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ll 156 (353)
T TIGR03265 77 DYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLL 156 (353)
T ss_pred CEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 11111 122221100 0 0011124789999999999999999999
Q ss_pred EEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 300 IIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 300 ILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++|||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|.+|++ +..|++
T Consensus 157 LLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i--~~~g~~ 219 (353)
T TIGR03265 157 LLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVI--EQVGTP 219 (353)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE--EEEcCH
Confidence 99999999999998554 23599999999999999999999999999999 445555
No 45
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.4e-24 Score=215.88 Aligned_cols=159 Identities=21% Similarity=0.295 Sum_probs=117.8
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------------EEEEEc
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------------RVVIVD 253 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------------rViiVd 253 (701)
+++++|+++|+.. .+...+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ .++++.
T Consensus 1 l~~~~l~~~~~~~-~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 1 LEVRNVSKTYGGG-GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred CeEEEEEEEcCCC-CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 4688999999731 0113688888 8999999999999999999999999999998885 233333
Q ss_pred CCccccc-C------------CCCCC-------------CCCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCC
Q 005344 254 TSNEIGG-D------------GDVPH-------------SGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305 (701)
Q Consensus 254 ~~~EIa~-~------------~~ip~-------------~~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPt 305 (701)
+...+.. . ..... .++.. .+...-.|+||+||++||++++.+|++||+||||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 159 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF 159 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3211100 0 00000 00000 0011225789999999999999999999999999
Q ss_pred CcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEe--CCeEE
Q 005344 306 TELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQIL--VGGIE 349 (701)
Q Consensus 306 sgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~--~G~I~ 349 (701)
++||+.++..+ . +.|.++|++||+.+.+..+||+++.+. +|++.
T Consensus 160 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~ 213 (220)
T cd03293 160 SALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV 213 (220)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEE
Confidence 99999998554 2 348999999999999999999999999 79883
No 46
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.92 E-value=1.5e-24 Score=216.61 Aligned_cols=155 Identities=20% Similarity=0.311 Sum_probs=115.5
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
+++++|+++|+... +...+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +.+++.+
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~--i~~~g~~~~~~~~~~~~ 77 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE--VRVDGTDISKLSEKELA 77 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCcee--EEECCEehhhcchhHHH
Confidence 46889999997310 013688888 8999999999999999999999999999998886 3443311
Q ss_pred -----ccccC----CCCCC-------------CCCch----------hh----------hccCCChhHHHHHHHHHHHcc
Q 005344 257 -----EIGGD----GDVPH-------------SGIGR----------AR----------RMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 -----EIa~~----~~ip~-------------~~ig~----------~r----------r~~v~s~G~qQRV~IArAL~~ 294 (701)
.+++. ..++. .+... .. ...-.|+||+||++||++++.
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 78 AFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred HHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHcc
Confidence 01100 00000 00000 00 111247799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+|++||+|||+++||+.++..+ ++ .|.+||++||+.+.+. +||+++++.+|++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 9999999999999999998554 33 5899999999999987 9999999998864
No 47
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.8e-24 Score=231.14 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=129.4
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC----CCCc--------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD----DHMK-------------- 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp----~~Gk-------------- 247 (701)
++++++|++.|+.. .+...+|+++ |.+|++++|+|+||||||||+++|+|++.+ ++|+
T Consensus 3 ~L~v~~l~~~~~~~-~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDE-SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCC-CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 57999999999742 1124689998 999999999999999999999999999974 5553
Q ss_pred --------EEEEEcCCcccccCCCCCCC--------------------------------CCch-----hhhccCCChhH
Q 005344 248 --------RVVIVDTSNEIGGDGDVPHS--------------------------------GIGR-----ARRMQVPNVNM 282 (701)
Q Consensus 248 --------rViiVd~~~EIa~~~~ip~~--------------------------------~ig~-----~rr~~v~s~G~ 282 (701)
.|.++.+..... ..|.. ++.. .+...-.|+||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~---l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq 158 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTS---LNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGM 158 (326)
T ss_pred HHHHHhCCCEEEEecCchhh---cCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence 133443332100 00000 0100 00111247899
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecC
Q 005344 283 QHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLG 354 (701)
Q Consensus 283 qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lg 354 (701)
+||++||+|++.+|++||+||||++||+..+..+ . +.|.++|++||+++++..+||++++|..|+| ++.+
T Consensus 159 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~i--ve~g 236 (326)
T PRK11022 159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV--VETG 236 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEC
Confidence 9999999999999999999999999999988554 3 3599999999999999999999999999999 6666
Q ss_pred cHHHHhhhhHHHHhhccCCCccee
Q 005344 355 DEEAKKRKVQKTILERKGPPTFTC 378 (701)
Q Consensus 355 d~~a~~r~~qe~Iler~~~p~f~~ 378 (701)
+. +.+.+.+.+|+...
T Consensus 237 ~~--------~~~~~~p~hpyt~~ 252 (326)
T PRK11022 237 KA--------HDIFRAPRHPYTQA 252 (326)
T ss_pred CH--------HHHhhCCCChHHHH
Confidence 65 23444555555443
No 48
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.7e-24 Score=226.81 Aligned_cols=166 Identities=17% Similarity=0.237 Sum_probs=123.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
.|++.||+++|+........+|+++ |.+|++++|+||||||||||+++|+|+++|+.|. +++++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~--i~~~g~~~~~~~~~~~ 79 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGT--IEWIFKDEKNKKKTKE 79 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE--EEEeceeccccccccc
Confidence 4789999999974211123588888 8999999999999999999999999999998886 3332110
Q ss_pred --------------------------ccccCCCCC-----C-------------------------------CCCc-h--
Q 005344 257 --------------------------EIGGDGDVP-----H-------------------------------SGIG-R-- 271 (701)
Q Consensus 257 --------------------------EIa~~~~ip-----~-------------------------------~~ig-~-- 271 (701)
.+++....+ . .++. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 159 (305)
T PRK13651 80 KEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL 159 (305)
T ss_pred ccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh
Confidence 011100000 0 0110 0
Q ss_pred hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEe
Q 005344 272 ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQIL 344 (701)
Q Consensus 272 ~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~ 344 (701)
.+.....|+||+||++||++++++|++||+||||++||+.++..+ ++.|.|||++||+++.+..+||+++++.
T Consensus 160 ~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~ 239 (305)
T PRK13651 160 QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFK 239 (305)
T ss_pred hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEE
Confidence 011122477999999999999999999999999999999988544 4569999999999999999999999999
Q ss_pred CCeEEEEecCcHHH
Q 005344 345 VGGIESVTLGDEEA 358 (701)
Q Consensus 345 ~G~I~~V~lgd~~a 358 (701)
+|++ +..+..+.
T Consensus 240 ~G~i--~~~g~~~~ 251 (305)
T PRK13651 240 DGKI--IKDGDTYD 251 (305)
T ss_pred CCEE--EEECCHHH
Confidence 9998 54555533
No 49
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4.7e-24 Score=216.59 Aligned_cols=162 Identities=20% Similarity=0.185 Sum_probs=121.4
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc----------------E
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------R 248 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------r 248 (701)
|++++.+|+++|+. ..+|+++ +.+|++++|+||||||||||+++|+|++.|+.|+ .
T Consensus 1 ~~l~~~~l~~~~~~-----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (239)
T cd03296 1 MSIEVRNVSKRFGD-----FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75 (239)
T ss_pred CEEEEEeEEEEECC-----EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccc
Confidence 35889999999973 3688888 8999999999999999999999999999998875 1
Q ss_pred EEEEcCCccccc-C---C--CCC--CCCC----ch----------hhh----------ccCCChhHHHHHHHHHHHccCC
Q 005344 249 VVIVDTSNEIGG-D---G--DVP--HSGI----GR----------ARR----------MQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 249 ViiVd~~~EIa~-~---~--~ip--~~~i----g~----------~rr----------~~v~s~G~qQRV~IArAL~~~P 296 (701)
++++.+...+.. . . .+. .... .. ... ..-.|+||+||++||++++.+|
T Consensus 76 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 155 (239)
T cd03296 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEP 155 (239)
T ss_pred eEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 233332211100 0 0 000 0000 00 001 1124679999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 297 ETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++||+||||++||+.++..+ ++ .|.|||++||+.+.+..+||+++++.+|++ +..++.
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~ 221 (239)
T cd03296 156 KVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRI--EQVGTP 221 (239)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeE--EEecCH
Confidence 99999999999999998544 33 489999999999999999999999999998 434444
No 50
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=7.6e-25 Score=220.12 Aligned_cols=165 Identities=24% Similarity=0.339 Sum_probs=125.0
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEE---EEEcCCccc--
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRV---VIVDTSNEI-- 258 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrV---iiVd~~~EI-- 258 (701)
...+++++|++.|| ...+|+++ |.++++++||||+|||||||||++.++.....|.++ +.+++.+-.
T Consensus 5 ~~~~~~~~l~~yYg-----~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 5 IPAIEVRDLNLYYG-----DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred cceeEecceeEEEC-----chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 35678999999999 45899999 899999999999999999999999999866543221 333333211
Q ss_pred -----------ccC----CCCCC------------CCCch--------------------hhhcc----CCChhHHHHHH
Q 005344 259 -----------GGD----GDVPH------------SGIGR--------------------ARRMQ----VPNVNMQHSVM 287 (701)
Q Consensus 259 -----------a~~----~~ip~------------~~ig~--------------------~rr~~----v~s~G~qQRV~ 287 (701)
+.. ..+|. .++.. .+++. -+|+|+|||++
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLc 159 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLC 159 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHH
Confidence 000 00010 00000 01111 14789999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
|||+++..|+||++||||++|||.+...+ .+...|||++||++.-+..++|.+..++.|++ |+.|+++.
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~L--vE~g~T~~ 234 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGEL--VEFGPTDK 234 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEE--EEEcCHHh
Confidence 99999999999999999999999988544 34679999999999999999999999999999 77787743
No 51
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.92 E-value=4e-24 Score=215.36 Aligned_cols=153 Identities=21% Similarity=0.327 Sum_probs=118.0
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
+++.+|+++|+. ..+|+++ +.+|++++|+|||||||||||++|+|++.|++|. +.+++.+
T Consensus 1 l~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~~~~~~~~~~~ 73 (232)
T cd03218 1 LRAENLSKRYGK-----RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK--ILLDGQDITKLPMHKRA 73 (232)
T ss_pred CeEEEEEEEeCC-----EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEECCEecccCCHhHHH
Confidence 468899999973 3588888 8999999999999999999999999999998886 3443321
Q ss_pred --ccccCC----CCCCC-------------CCch----------hh----------hccCCChhHHHHHHHHHHHccCCC
Q 005344 257 --EIGGDG----DVPHS-------------GIGR----------AR----------RMQVPNVNMQHSVMIEAVENHMPE 297 (701)
Q Consensus 257 --EIa~~~----~ip~~-------------~ig~----------~r----------r~~v~s~G~qQRV~IArAL~~~Pd 297 (701)
.+++.. .++.. .... .. ...-.|+||+||++||++++.+|+
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred hccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 011100 00000 0000 00 111246799999999999999999
Q ss_pred EEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 298 TIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 298 VIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+||+||||++||+.++..+ .+.|.++|++||+.+.+..+||+++++.+|++.
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 212 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL 212 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999998554 446899999999999999999999999999984
No 52
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.92 E-value=2.9e-24 Score=213.80 Aligned_cols=154 Identities=19% Similarity=0.247 Sum_probs=116.8
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc----------------EEE
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------RVV 250 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------rVi 250 (701)
++++++++.|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|++|. ++.
T Consensus 1 i~~~~l~~~~~~-----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN-----VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIA 75 (213)
T ss_pred CEEEeeEEEECC-----eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEE
Confidence 468899999973 3688888 8999999999999999999999999999998885 123
Q ss_pred EEcCCcccccCCC------CC--CCCCch----------hhhc----------cCCChhHHHHHHHHHHHccCCCEEEEc
Q 005344 251 IVDTSNEIGGDGD------VP--HSGIGR----------ARRM----------QVPNVNMQHSVMIEAVENHMPETIIID 302 (701)
Q Consensus 251 iVd~~~EIa~~~~------ip--~~~ig~----------~rr~----------~v~s~G~qQRV~IArAL~~~PdVIILD 302 (701)
++.+...+..... .. ...... ...+ .-.|+||+||++||++++.+|++||+|
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD 155 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD 155 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 3332211100000 00 000000 0111 124779999999999999999999999
Q ss_pred CCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 303 EIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 303 EPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
|||++||+.++..+ ++ .|.|+|++||+.+++..+||+++.+.+|++
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 99999999998554 23 489999999999999999999999999998
No 53
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.92 E-value=3.8e-24 Score=234.90 Aligned_cols=163 Identities=20% Similarity=0.306 Sum_probs=125.1
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
.+++++||+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|+++|++|+
T Consensus 2 ~~L~~~nls~~y~~-----~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~ 76 (402)
T PRK09536 2 PMIDVSDLSVEFGD-----TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76 (402)
T ss_pred ceEEEeeEEEEECC-----EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHh
Confidence 36889999999983 4689988 8999999999999999999999999999998885
Q ss_pred -EEEEEcCCccccc---------CCCCCCC-CCc---hh-------------------hhccCCChhHHHHHHHHHHHcc
Q 005344 248 -RVVIVDTSNEIGG---------DGDVPHS-GIG---RA-------------------RRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 -rViiVd~~~EIa~---------~~~ip~~-~ig---~~-------------------rr~~v~s~G~qQRV~IArAL~~ 294 (701)
+++++.+...... .+..++. .++ .. +...-.|+|||||++||++|++
T Consensus 77 ~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~ 156 (402)
T PRK09536 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ 156 (402)
T ss_pred cceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 2333333221100 0001100 000 00 1112257899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
+|++|||||||++||+..+..+ .+.|.|||+++|+++++..+||+++++.+|++ +..|+.+
T Consensus 157 ~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~i--v~~G~~~ 224 (402)
T PRK09536 157 ATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRV--RAAGPPA 224 (402)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEecCHH
Confidence 9999999999999999987544 44689999999999999999999999999998 5556653
No 54
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.92 E-value=3.7e-24 Score=213.99 Aligned_cols=153 Identities=20% Similarity=0.275 Sum_probs=117.9
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
++++||+++|+. ..+++++ +.+|++++|+|||||||||||++|+|++.|+.|. +.+++.+
T Consensus 1 l~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~--i~~~g~~~~~~~~~~~~ 73 (222)
T cd03224 1 LEVENLNAGYGK-----SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGS--IRFDGRDITGLPPHERA 73 (222)
T ss_pred CEEeeEEeecCC-----eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEECCEEcCCCCHHHHH
Confidence 468899999973 3578887 8999999999999999999999999999998885 4444321
Q ss_pred --ccccCC----CCCCC-----------CCc---h-------hhhc-----------cCCChhHHHHHHHHHHHccCCCE
Q 005344 257 --EIGGDG----DVPHS-----------GIG---R-------ARRM-----------QVPNVNMQHSVMIEAVENHMPET 298 (701)
Q Consensus 257 --EIa~~~----~ip~~-----------~ig---~-------~rr~-----------~v~s~G~qQRV~IArAL~~~PdV 298 (701)
.+++.. .++.. ..+ . ...+ .-.|+|++||++||++++.+|++
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred hcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 011100 00000 000 0 0011 12467999999999999999999
Q ss_pred EEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 299 IIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 299 IILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
||+||||++||+.++..+ ++.|.|+|++||+.+.+..+||+++.+.+|++.
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV 211 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEE
Confidence 999999999999998544 346899999999999999999999999999983
No 55
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.1e-24 Score=229.72 Aligned_cols=163 Identities=21% Similarity=0.289 Sum_probs=122.4
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
+++++||+++|+.. .+...+|+++ +.+|++++|+||||||||||+|+|+|++.|++|. +.+++.+
T Consensus 1 mi~i~~l~~~y~~~-~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~--I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 1 MIELKNISKVFPQG-GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR--VLVDGQDLTALSEKEL 77 (343)
T ss_pred CEEEEeEEEEeCCC-CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE--EEECCEECCcCCHHHH
Confidence 47899999999721 0124688888 8999999999999999999999999999999885 4444321
Q ss_pred -----ccccC----CCCCCC-------------CC------------------chh--hhccCCChhHHHHHHHHHHHcc
Q 005344 257 -----EIGGD----GDVPHS-------------GI------------------GRA--RRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 -----EIa~~----~~ip~~-------------~i------------------g~~--rr~~v~s~G~qQRV~IArAL~~ 294 (701)
.+++. ..++.. ++ ... +...-.|+||+||++||+++++
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 01110 000000 00 000 0111247899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+||||++||+.++..+ . +.|.|+|++||+++.+..+||+++++.+|++ +..++.
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i--~~~g~~ 225 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRL--VEQGTV 225 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCH
Confidence 9999999999999999998554 2 3489999999999999999999999999998 444544
No 56
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.7e-24 Score=217.37 Aligned_cols=161 Identities=17% Similarity=0.324 Sum_probs=128.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
+|++.||+++.. ++.+++++ +.+||+.+|+||||+|||||||.|+|.+.|++|+ +.+++.+
T Consensus 1 mi~a~nls~~~~-----Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~--v~~~g~~l~~~~~~~l 73 (259)
T COG4559 1 MIRAENLSYSLA-----GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGE--VTLNGVPLNSWPPEEL 73 (259)
T ss_pred CeeeeeeEEEee-----cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCe--EeeCCcChhhCCHHHH
Confidence 477899999987 35789988 8899999999999999999999999999999986 4444432
Q ss_pred -----------ccc---------cCCCCCCCCCch---------------------hhhccCCChhHHHHHHHHHHHcc-
Q 005344 257 -----------EIG---------GDGDVPHSGIGR---------------------ARRMQVPNVNMQHSVMIEAVENH- 294 (701)
Q Consensus 257 -----------EIa---------~~~~ip~~~ig~---------------------~rr~~v~s~G~qQRV~IArAL~~- 294 (701)
.++ .++.+|+..-.. .+.+...|+|+||||.+||+|++
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl 153 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQL 153 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHc
Confidence 111 123444421000 12344578999999999999987
Q ss_pred -----CCCEEEEcCCCCcccHHHH-------HHHHhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 295 -----MPETIIIDEIGTELEALAA-------STIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 295 -----~PdVIILDEPtsgLD~~a~-------~~l~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
.+.+|++||||+.||+..+ +.++..|..|+.+.||++++..+||++++|..|++ +..|.+..
T Consensus 154 ~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv--~a~g~p~~ 227 (259)
T COG4559 154 WPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRV--IASGSPQD 227 (259)
T ss_pred cCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeE--eecCCHHH
Confidence 4459999999999999887 34477899999999999999999999999999999 66777743
No 57
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.92 E-value=2.8e-24 Score=214.03 Aligned_cols=153 Identities=20% Similarity=0.271 Sum_probs=116.7
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
++++++++++|+. ...+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +++++.+
T Consensus 1 ~l~~~~l~~~~~~----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~--i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 1 MIEFHNVSKAYPG----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQ--VRIAGEDVNRLRGRQL 74 (214)
T ss_pred CEEEEeeeEEeCC----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEECCEEcccCCHHHH
Confidence 3789999999941 23588888 8999999999999999999999999999998886 4444321
Q ss_pred -----ccccCC----CCCCC-------------CCch----------hh----------hccCCChhHHHHHHHHHHHcc
Q 005344 257 -----EIGGDG----DVPHS-------------GIGR----------AR----------RMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 -----EIa~~~----~ip~~-------------~ig~----------~r----------r~~v~s~G~qQRV~IArAL~~ 294 (701)
.+++.. .++.. +... .. ...-.|+||+||++||++++.
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVN 154 (214)
T ss_pred HHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC
Confidence 011100 00000 0000 00 111247799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCe
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~ 347 (701)
+|++||+||||++||+.++..+ ++.|.++|++||+.+.+..+||+++++..|+
T Consensus 155 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 155 SPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999998554 3468999999999999999999999998874
No 58
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.92 E-value=4.3e-24 Score=206.75 Aligned_cols=151 Identities=17% Similarity=0.271 Sum_probs=117.0
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCC
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~ 266 (701)
+++++++++|+. ...+++++ +.+|++++|+||||||||||+++|+|++.|+.|. +.+++...+++....+.
T Consensus 1 i~~~~~~~~~~~----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~~~~~i~~~~q~~~ 74 (166)
T cd03223 1 IELENLSLATPD----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGR--IGMPEGEDLLFLPQRPY 74 (166)
T ss_pred CEEEEEEEEcCC----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce--EEECCCceEEEECCCCc
Confidence 368899999962 23588888 8999999999999999999999999999999886 44544333332211111
Q ss_pred ---CCCchhh---hccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH----HhcCCEEEEEEcChhHHHHh
Q 005344 267 ---SGIGRAR---RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI----AQRGVQLVGTAHGMTIDNIV 336 (701)
Q Consensus 267 ---~~ig~~r---r~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~e~GvtVIiTTHd~~l~~~l 336 (701)
..+...- .....|+|++||++||++++.+|++||+|||+++||+..+..+ .+.+.++|++||+.... .+
T Consensus 75 ~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~ 153 (166)
T cd03223 75 LPLGTLREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KF 153 (166)
T ss_pred cccccHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hh
Confidence 0111110 2234688999999999999999999999999999999998655 44589999999999876 58
Q ss_pred cCcEEEEeCCe
Q 005344 337 KNPSLQILVGG 347 (701)
Q Consensus 337 ~drvlvl~~G~ 347 (701)
||+++.+..++
T Consensus 154 ~d~i~~l~~~~ 164 (166)
T cd03223 154 HDRVLDLDGEG 164 (166)
T ss_pred CCEEEEEcCCC
Confidence 99999998775
No 59
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.5e-24 Score=223.55 Aligned_cols=164 Identities=14% Similarity=0.190 Sum_probs=123.3
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
.++++||+++|+........+|+++ +.+|++++|+|||||||||||++|+|++.|++|. +.+++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~--i~~~g~~~~~~~~~~~ 79 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGT--ITIAGYHITPETGNKN 79 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE--EEECCEECccccccch
Confidence 5789999999973110013588888 9999999999999999999999999999999885 3443321
Q ss_pred ------ccccCCC-----CCC-------------------------------CCCc-h--hhhccCCChhHHHHHHHHHH
Q 005344 257 ------EIGGDGD-----VPH-------------------------------SGIG-R--ARRMQVPNVNMQHSVMIEAV 291 (701)
Q Consensus 257 ------EIa~~~~-----ip~-------------------------------~~ig-~--~rr~~v~s~G~qQRV~IArA 291 (701)
.+++... +.. .++. . .+.....|+|||||++||++
T Consensus 80 ~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lara 159 (287)
T PRK13641 80 LKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGV 159 (287)
T ss_pred HHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHH
Confidence 0110000 000 0110 0 01112357799999999999
Q ss_pred HccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 292 ENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 292 L~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++.+|++||+||||++||+.++..+ ++.|.|||++||+++.+..+||+++++.+|++ +..++.
T Consensus 160 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i--~~~g~~ 229 (287)
T PRK13641 160 MAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL--IKHASP 229 (287)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 9999999999999999999998544 45699999999999999999999999999998 444554
No 60
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.92 E-value=3.2e-24 Score=229.80 Aligned_cols=166 Identities=19% Similarity=0.213 Sum_probs=125.3
Q ss_pred cceEEEEeEEEEECccc--------ccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 187 NRKMQVIGLTCRVGRAV--------AGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v--------~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
+.++++.||++.|+... .+...+++++ |.+|++++|+|+||||||||+++|+|++.|++|+ +++++.
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~--I~~~G~ 83 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGE--VAWLGK 83 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcE--EEECCE
Confidence 45789999999997311 1234688888 8999999999999999999999999999998885 444432
Q ss_pred c--------------ccccCC------CCCCC---------------CCchh----------hh-----------ccCCC
Q 005344 256 N--------------EIGGDG------DVPHS---------------GIGRA----------RR-----------MQVPN 279 (701)
Q Consensus 256 ~--------------EIa~~~------~ip~~---------------~ig~~----------rr-----------~~v~s 279 (701)
+ .+++.. ..|.. .+... .. ..-.|
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LS 163 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFS 163 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCC
Confidence 1 011100 01110 00000 00 11247
Q ss_pred hhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEE
Q 005344 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESV 351 (701)
Q Consensus 280 ~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V 351 (701)
+||+||++||+|++.+|++||+||||++||+..+..+ .+ .|.|+|++|||+.++..+||++++|..|++ +
T Consensus 164 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i--v 241 (331)
T PRK15079 164 GGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA--V 241 (331)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--E
Confidence 8999999999999999999999999999999998544 33 499999999999999999999999999999 6
Q ss_pred ecCcH
Q 005344 352 TLGDE 356 (701)
Q Consensus 352 ~lgd~ 356 (701)
+.++.
T Consensus 242 e~g~~ 246 (331)
T PRK15079 242 ELGTY 246 (331)
T ss_pred EEcCH
Confidence 56655
No 61
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.9e-24 Score=223.19 Aligned_cols=165 Identities=19% Similarity=0.251 Sum_probs=123.6
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
|.+++++|+++|+........+|+++ |.+|++++|+||||||||||+++|+|++.|+.|+ +++++..
T Consensus 1 ~~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~--i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 1 MTIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGT--VTVDDITITHKTKDK 78 (286)
T ss_pred CEEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE--EEECCEECccccccc
Confidence 35789999999963211123589998 8999999999999999999999999999999885 3444321
Q ss_pred -------ccccCCCCC-----------------------C-------------CCCc-hh--hhccCCChhHHHHHHHHH
Q 005344 257 -------EIGGDGDVP-----------------------H-------------SGIG-RA--RRMQVPNVNMQHSVMIEA 290 (701)
Q Consensus 257 -------EIa~~~~ip-----------------------~-------------~~ig-~~--rr~~v~s~G~qQRV~IAr 290 (701)
.+++....+ . .++. .. ....-.|+|++||++||+
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred hHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 011100000 0 0110 00 011224779999999999
Q ss_pred HHccCCCEEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 291 VENHMPETIIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 291 AL~~~PdVIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+++++|++||+|||+++||+.++..+ . +.|.|||++||+++.+..+||+++++..|++ +..++.
T Consensus 159 aL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i--~~~g~~ 230 (286)
T PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSI--VSQTSP 230 (286)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEECCH
Confidence 99999999999999999999998554 2 3589999999999999999999999999998 445554
No 62
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.92 E-value=3.2e-24 Score=232.50 Aligned_cols=160 Identities=20% Similarity=0.305 Sum_probs=123.7
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCC--CcEEEEEcCCc-------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDH--MKRVVIVDTSN------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~--GkrViiVd~~~------- 256 (701)
.+++++|+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|+. |+ +.+++..
T Consensus 5 ~l~~~~l~~~~~~-----~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~--i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGA-----NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGR--IAIADRDLTHAPPH 77 (362)
T ss_pred EEEEEEEEEEECC-----eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEE--EEECCEECCCCCHH
Confidence 4789999999983 3588888 89999999999999999999999999999998 86 4444321
Q ss_pred --ccccC----CCCCCCC-------------------------------Cch--hhhccCCChhHHHHHHHHHHHccCCC
Q 005344 257 --EIGGD----GDVPHSG-------------------------------IGR--ARRMQVPNVNMQHSVMIEAVENHMPE 297 (701)
Q Consensus 257 --EIa~~----~~ip~~~-------------------------------ig~--~rr~~v~s~G~qQRV~IArAL~~~Pd 297 (701)
.++.. ..+|+.. +.. .+...-.|+|||||++||++|+.+|+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ 157 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPD 157 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 11110 1112210 000 01112257899999999999999999
Q ss_pred EEEEcCCCCcccHHHHHHH-------Hhc--CCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 298 TIIIDEIGTELEALAASTI-------AQR--GVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 298 VIILDEPtsgLD~~a~~~l-------~e~--GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
+|++|||+++||+..+..+ .+. |.|+|++||+.+++..+||++++|.+|++ +..++++
T Consensus 158 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i--~~~g~~~ 224 (362)
T TIGR03258 158 VLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRL--AAHGEPQ 224 (362)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCHH
Confidence 9999999999999998554 333 89999999999999999999999999999 4455553
No 63
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.2e-24 Score=223.53 Aligned_cols=166 Identities=20% Similarity=0.259 Sum_probs=123.0
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.+++++|+++|+....+...+|+++ |.+|++++|+||||||||||+++|+|++.|+.|.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3789999999973211123588988 9999999999999999999999999999998875
Q ss_pred ----EEEEEcCCcc--ccc--------CC----CCCC-------------CCCc-h--hhhccCCChhHHHHHHHHHHHc
Q 005344 248 ----RVVIVDTSNE--IGG--------DG----DVPH-------------SGIG-R--ARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 248 ----rViiVd~~~E--Ia~--------~~----~ip~-------------~~ig-~--~rr~~v~s~G~qQRV~IArAL~ 293 (701)
+|+++.+... +.. .+ ..+. .++. . .+.....|+||+||++||++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 1233333210 000 00 0000 0111 0 0111224779999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 294 HMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++|++||+||||++||+.++..+ .+ .|.|||++||+++++..+||+++++.+|++ +..++.
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i--~~~g~~ 230 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTV--FLQGTP 230 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCH
Confidence 99999999999999999998654 23 499999999999999999999999999998 444554
No 64
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.92 E-value=5e-24 Score=230.24 Aligned_cols=160 Identities=18% Similarity=0.252 Sum_probs=123.5
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
+++++++|+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|++|+ +++++.+
T Consensus 1 ~~L~i~~l~~~~~~-----~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~--I~i~g~~i~~~~~~~ 73 (353)
T PRK10851 1 MSIEIANIKKSFGR-----TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH--IRFHGTDVSRLHARD 73 (353)
T ss_pred CEEEEEEEEEEeCC-----eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEECCEECCCCCHHH
Confidence 45889999999973 3688888 8999999999999999999999999999999886 4444321
Q ss_pred -ccccC----CCCCCC-----------------CCch----------hhhc----------cCCChhHHHHHHHHHHHcc
Q 005344 257 -EIGGD----GDVPHS-----------------GIGR----------ARRM----------QVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 -EIa~~----~~ip~~-----------------~ig~----------~rr~----------~v~s~G~qQRV~IArAL~~ 294 (701)
.+++. ..+|+. .... ...+ .-.|+|||||++||++|+.
T Consensus 74 r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~ 153 (353)
T PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV 153 (353)
T ss_pred CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 11110 011110 0000 0011 1247799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+|||+++||+..+..+ . +.|.|+|++||+.+++..+||++++|.+|++ +..+++
T Consensus 154 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i--~~~g~~ 221 (353)
T PRK10851 154 EPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNI--EQAGTP 221 (353)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEEcCH
Confidence 9999999999999999998544 2 3489999999999999999999999999999 445555
No 65
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.92 E-value=3.9e-24 Score=232.86 Aligned_cols=163 Identities=21% Similarity=0.321 Sum_probs=125.6
Q ss_pred hccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc----
Q 005344 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE---- 257 (701)
Q Consensus 185 ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E---- 257 (701)
....+++++||+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|+.|+ +++++..-
T Consensus 10 ~~~~~L~l~~l~~~~~~-----~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~--I~~~g~~i~~~~ 82 (375)
T PRK09452 10 SLSPLVELRGISKSFDG-----KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGR--IMLDGQDITHVP 82 (375)
T ss_pred cCCceEEEEEEEEEECC-----eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE--EEECCEECCCCC
Confidence 34456899999999983 3578887 8999999999999999999999999999999886 44444310
Q ss_pred -----cccC----CCCCCCCC-------------chh--------------------hhccCCChhHHHHHHHHHHHccC
Q 005344 258 -----IGGD----GDVPHSGI-------------GRA--------------------RRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 258 -----Ia~~----~~ip~~~i-------------g~~--------------------rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
+++. ..+|+..+ ... +...-.|+||||||+||++|+.+
T Consensus 83 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~ 162 (375)
T PRK09452 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNK 162 (375)
T ss_pred HHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 1110 11222100 000 01112478999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 296 PETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||+|||+++||+..+..+ .+.|.++|++||+..++..++|++++|.+|++. ..+++
T Consensus 163 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~--~~g~~ 229 (375)
T PRK09452 163 PKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE--QDGTP 229 (375)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE--EEcCH
Confidence 999999999999999998554 235999999999999999999999999999994 34554
No 66
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=5.3e-24 Score=214.91 Aligned_cols=158 Identities=21% Similarity=0.289 Sum_probs=119.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
++++.+|+++|+.. .+...+++++ +.+|++++|+||||||||||+++|+|+++|+.|. +.+++..
T Consensus 1 ~i~~~~l~~~~~~~-~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 1 MIELKNVSKVFGDT-GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS--VLVDGTDLTLLSGKEL 77 (233)
T ss_pred CeEEecceEEccCC-CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEECCEEcccCCHHHH
Confidence 36899999999731 0012588888 8999999999999999999999999999999886 4444321
Q ss_pred -----ccccC----CCCCCC-------------CCch----------hhh----------ccCCChhHHHHHHHHHHHcc
Q 005344 257 -----EIGGD----GDVPHS-------------GIGR----------ARR----------MQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 -----EIa~~----~~ip~~-------------~ig~----------~rr----------~~v~s~G~qQRV~IArAL~~ 294 (701)
.+++. ..++.. .... ... ..-.|+||+||++||++++.
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 01110 000100 0000 001 11247799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+|++||+|||+++||+.++..+ ++ .|.++|++||+.+.+..+||+++.+.+|++.
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 220 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV 220 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999988544 33 4899999999999999999999999999983
No 67
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.92 E-value=4.3e-24 Score=221.08 Aligned_cols=157 Identities=18% Similarity=0.266 Sum_probs=120.4
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------------EEEE
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------------RVVI 251 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------------rVii 251 (701)
+.++++||+++|+. ..+|+++ +.+|++++|+||||||||||+++|+|++.|+.|+ .+++
T Consensus 11 ~~l~i~~l~~~~~~-----~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~ 85 (257)
T PRK11247 11 TPLLLNAVSKRYGE-----RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRL 85 (257)
T ss_pred CcEEEEEEEEEECC-----cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEE
Confidence 56899999999973 3688888 8999999999999999999999999999998885 1333
Q ss_pred EcCCccccc-C---CC--CCC--------------CCCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCccc
Q 005344 252 VDTSNEIGG-D---GD--VPH--------------SGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELE 309 (701)
Q Consensus 252 Vd~~~EIa~-~---~~--ip~--------------~~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD 309 (701)
+.+...+.. . .. +.. .++.. .....-.|+||+||++||++++.+|++||+||||++||
T Consensus 86 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD 165 (257)
T PRK11247 86 MFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD 165 (257)
T ss_pred EecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 333221100 0 00 000 00000 01112357899999999999999999999999999999
Q ss_pred HHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 310 ALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 310 ~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+.++..+ .+.|.++|++||+.+.+..+||+++.+.+|++.
T Consensus 166 ~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~ 213 (257)
T PRK11247 166 ALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIG 213 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9998544 235899999999999999999999999999983
No 68
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.92 E-value=4e-24 Score=212.47 Aligned_cols=152 Identities=24% Similarity=0.364 Sum_probs=116.6
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc---------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE--------- 257 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E--------- 257 (701)
+++++|+++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +.+++.+-
T Consensus 1 l~~~~l~~~~~~-----~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~~ 73 (213)
T cd03262 1 IEIKNLHKSFGD-----FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGT--IIIDGLKLTDDKKNINE 73 (213)
T ss_pred CEEEEEEEEECC-----eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEECCEECCccchhHHH
Confidence 368899999973 3588887 8999999999999999999999999999998886 44443210
Q ss_pred ----cccC----CCCCCC--------------CCch----------hh----------hccCCChhHHHHHHHHHHHccC
Q 005344 258 ----IGGD----GDVPHS--------------GIGR----------AR----------RMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 258 ----Ia~~----~~ip~~--------------~ig~----------~r----------r~~v~s~G~qQRV~IArAL~~~ 295 (701)
+++. ..++.. ++.. .. ...-.|+||+||++||++++++
T Consensus 74 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 153 (213)
T cd03262 74 LRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMN 153 (213)
T ss_pred HHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcC
Confidence 1100 000000 0000 00 1112477999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 296 PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
|++||+|||+++||+.++..+ ++.|.++|++||+.+.+..+||+++++..|++
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999988544 44689999999999999999999999998864
No 69
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=3e-24 Score=240.43 Aligned_cols=182 Identities=22% Similarity=0.320 Sum_probs=142.4
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC----CCc-------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADD----HMK------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~----~Gk------------- 247 (701)
..++|+||++.|... .+...+++++ |.+||+++|+|.+||||||+++.|.|++++. .|+
T Consensus 4 ~lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 4 PLLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred ceEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 378999999999865 3334689998 9999999999999999999999999999876 343
Q ss_pred ---------EEEEEcCCcccccCCCCCCC--------------------------------CCchh-hh--c-cCCChhH
Q 005344 248 ---------RVVIVDTSNEIGGDGDVPHS--------------------------------GIGRA-RR--M-QVPNVNM 282 (701)
Q Consensus 248 ---------rViiVd~~~EIa~~~~ip~~--------------------------------~ig~~-rr--~-~v~s~G~ 282 (701)
+|.+|+|.+--. .-|.. ++... .+ + .-.|+||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~s---lnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~ 159 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTS---LNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGM 159 (539)
T ss_pred HHHHHhccccEEEEecCchhh---cCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchH
Confidence 334444431100 00100 11110 11 1 2358899
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecC
Q 005344 283 QHSVMIEAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLG 354 (701)
Q Consensus 283 qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lg 354 (701)
+||++||+|++.+|++||+||||++||+..+.++ .+.|+++|++|||+..+..+||++++|+.|++ |+.|
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i--VE~G 237 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI--VETG 237 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE--EEec
Confidence 9999999999999999999999999999998655 56799999999999999999999999999999 8888
Q ss_pred cHHHHhhhhHHHHhhccCCCcceeeeeee
Q 005344 355 DEEAKKRKVQKTILERKGPPTFTCAVEMI 383 (701)
Q Consensus 355 d~~a~~r~~qe~Iler~~~p~f~~~vev~ 383 (701)
+. +.++.++.+||...++...
T Consensus 238 ~~--------~~i~~~p~hpYT~~Ll~a~ 258 (539)
T COG1123 238 PT--------EEILSNPQHPYTRGLLAAV 258 (539)
T ss_pred CH--------HHHHhccCCcccHHHHhhC
Confidence 87 4577788888887766654
No 70
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.8e-24 Score=212.07 Aligned_cols=152 Identities=28% Similarity=0.382 Sum_probs=117.1
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-------ccc
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------EIG 259 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------EIa 259 (701)
++++++++.|+. ..+++++ +.+|++++|+|||||||||||++|+|++.|+.|+ +.+++.+ .++
T Consensus 1 l~~~~l~~~~~~-----~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR-----VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE--VLFDGKPLDIAARNRIG 73 (210)
T ss_pred CEEEEEEEEECC-----EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCCchhHHHHccEE
Confidence 468899999973 3588887 8999999999999999999999999999998886 4444321 011
Q ss_pred cCC----CCCCC-------------C------------------Cch--hhhccCCChhHHHHHHHHHHHccCCCEEEEc
Q 005344 260 GDG----DVPHS-------------G------------------IGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIID 302 (701)
Q Consensus 260 ~~~----~ip~~-------------~------------------ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILD 302 (701)
+.. .++.. + +.. .....-.|+||+||++||++++.+|++||+|
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllD 153 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD 153 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 100 00000 0 000 0011124779999999999999999999999
Q ss_pred CCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 303 EIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 303 EPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
||+++||+.++..+ .+.|.++|++||+.+.+..+||+++.+.+|++
T Consensus 154 EP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i 206 (210)
T cd03269 154 EPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRA 206 (210)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEE
Confidence 99999999988544 44589999999999999999999999999997
No 71
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.91 E-value=3.7e-24 Score=209.09 Aligned_cols=151 Identities=21% Similarity=0.368 Sum_probs=119.8
Q ss_pred EEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccc--------
Q 005344 191 QVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIG-------- 259 (701)
Q Consensus 191 eI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa-------- 259 (701)
++++++++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|. +++++.+-..
T Consensus 1 ~~~~l~~~~~~-----~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~--v~~~g~~~~~~~~~~~~~ 73 (180)
T cd03214 1 EVENLSVGYGG-----RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE--ILLDGKDLASLSPKELAR 73 (180)
T ss_pred CeeEEEEEECC-----eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEECCEECCcCCHHHHHH
Confidence 36799999973 3588888 8999999999999999999999999999999998 6666542100
Q ss_pred cCCCCC----CCCCchh--hhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hhc-CCEEEE
Q 005344 260 GDGDVP----HSGIGRA--RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQR-GVQLVG 325 (701)
Q Consensus 260 ~~~~ip----~~~ig~~--rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~-GvtVIi 325 (701)
..+.++ ..++... ......|+|++||++|+++++.+|++||+||||++||+.++..+ ++. |.++|+
T Consensus 74 ~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii 153 (180)
T cd03214 74 KIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM 153 (180)
T ss_pred HHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 001111 1122111 12234688999999999999999999999999999999998554 334 899999
Q ss_pred EEcChhHHHHhcCcEEEEeCCeE
Q 005344 326 TAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 326 TTHd~~l~~~l~drvlvl~~G~I 348 (701)
+||+.+.+..+||+++.+..|++
T Consensus 154 ~sh~~~~~~~~~d~~~~l~~g~i 176 (180)
T cd03214 154 VLHDLNLAARYADRVILLKDGRI 176 (180)
T ss_pred EeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999987
No 72
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.8e-24 Score=220.45 Aligned_cols=159 Identities=16% Similarity=0.203 Sum_probs=121.7
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
+++++||+++|+. ..+++++ +.+|++++|+|||||||||||++|+|++.|+.|. +++++.+
T Consensus 1 ml~~~~l~~~~~~-----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 1 MLATSDLWFRYQD-----EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGA--VLWQGKPLDYSKRGLL 73 (271)
T ss_pred CeEEEEEEEEcCC-----cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccE--EEECCEEcccccCCHH
Confidence 4789999999973 3588888 8999999999999999999999999999999885 3443321
Q ss_pred ----ccccCCCC-----CC-------------CCCchh--------------------hhccCCChhHHHHHHHHHHHcc
Q 005344 257 ----EIGGDGDV-----PH-------------SGIGRA--------------------RRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 ----EIa~~~~i-----p~-------------~~ig~~--------------------rr~~v~s~G~qQRV~IArAL~~ 294 (701)
.+++...- .. .+.... ....-.|+||+||++||++++.
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~ 153 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL 153 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc
Confidence 01110000 00 000000 0111247799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+||||++||+.++..+ .+.|.+||++||+.+.+..+||+++++.+|++ +..+..
T Consensus 154 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 220 (271)
T PRK13638 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQI--LTHGAP 220 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 9999999999999999998544 34589999999999999999999999999998 445554
No 73
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.91 E-value=4.8e-24 Score=228.34 Aligned_cols=182 Identities=15% Similarity=0.233 Sum_probs=132.0
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC---CCc--------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADD---HMK-------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~---~Gk-------------- 247 (701)
..++++||++.|+.. .+...+++++ |.+|++++|+|+||||||||+++|+|++.|. +|+
T Consensus 11 ~~L~i~~l~~~~~~~-~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTP-DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecC-CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 468999999999631 1234689988 8999999999999999999999999999885 563
Q ss_pred --------EEEEEcCCcccccC----------------CCCCC-------------CCCch-hh----hccCCChhHHHH
Q 005344 248 --------RVVIVDTSNEIGGD----------------GDVPH-------------SGIGR-AR----RMQVPNVNMQHS 285 (701)
Q Consensus 248 --------rViiVd~~~EIa~~----------------~~ip~-------------~~ig~-~r----r~~v~s~G~qQR 285 (701)
+|.++.+....... ..... .++.. .. ...-.|+||+||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 24444443210000 00000 00000 00 011247899999
Q ss_pred HHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 286 VMIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 286 V~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
++||++++.+|++||+||||++||+.++..+ .+ .|.++|++|||+..+..+||++++|..|+| ++.|+.
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~i--ve~g~~- 246 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRT--MEYGNA- 246 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEECCH-
Confidence 9999999999999999999999999998544 33 499999999999999999999999999999 666665
Q ss_pred HHhhhhHHHHhhccCCCcceeee
Q 005344 358 AKKRKVQKTILERKGPPTFTCAV 380 (701)
Q Consensus 358 a~~r~~qe~Iler~~~p~f~~~v 380 (701)
+.+...+.+|+.+..+
T Consensus 247 -------~~i~~~p~~pyt~~l~ 262 (330)
T PRK09473 247 -------RDVFYQPSHPYSIGLL 262 (330)
T ss_pred -------HHHHhCCCCHHHHHHH
Confidence 3344555555554433
No 74
>PRK10908 cell division protein FtsE; Provisional
Probab=99.91 E-value=6.4e-24 Score=213.12 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=117.8
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
+++++|++++|.. ...+++++ +.+|++++|+||||||||||+++|+|++.|++|. +.+++.+
T Consensus 1 ~l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 1 MIRFEHVSKAYLG----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGK--IWFSGHDITRLKNREV 74 (222)
T ss_pred CEEEEeeEEEecC----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCEEcccCChhHH
Confidence 3689999999931 23688888 8999999999999999999999999999998886 3443321
Q ss_pred -----ccccCCC----CCCC-------------CCch----------hh----------hccCCChhHHHHHHHHHHHcc
Q 005344 257 -----EIGGDGD----VPHS-------------GIGR----------AR----------RMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 -----EIa~~~~----ip~~-------------~ig~----------~r----------r~~v~s~G~qQRV~IArAL~~ 294 (701)
.+++... ++.. +... .. ...-.|+||+||++||++++.
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVN 154 (222)
T ss_pred HHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHc
Confidence 0111000 0000 0000 00 112246799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+|++||+||||++||+.++..+ ++.|.++|++||+.+++..+||+++.+.+|++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 215 (222)
T PRK10908 155 KPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215 (222)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999987544 34589999999999999999999999999987
No 75
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.6e-24 Score=230.93 Aligned_cols=159 Identities=19% Similarity=0.288 Sum_probs=122.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
.+++++|+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|++|+ +.+++..
T Consensus 3 ~l~i~~l~~~~~~-----~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~--I~~~g~~i~~~~~~~~ 75 (369)
T PRK11000 3 SVTLRNVTKAYGD-----VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD--LFIGEKRMNDVPPAER 75 (369)
T ss_pred EEEEEEEEEEeCC-----eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE--EEECCEECCCCCHhHC
Confidence 4789999999973 3588888 8999999999999999999999999999999885 3333321
Q ss_pred ccccC----CCCCCC-------------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEE
Q 005344 257 EIGGD----GDVPHS-------------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETI 299 (701)
Q Consensus 257 EIa~~----~~ip~~-------------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVI 299 (701)
.+++. ..+++. ++.. .+...-.|+|||||++||++|+.+|++|
T Consensus 76 ~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lL 155 (369)
T PRK11000 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155 (369)
T ss_pred CEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 01110 011110 0000 0111225789999999999999999999
Q ss_pred EEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 300 IIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 300 ILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|+|||+++||+..+..+ . +.|.|+|++||+.+++..+||++++|.+|++. ..+++
T Consensus 156 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~--~~g~~ 218 (369)
T PRK11000 156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA--QVGKP 218 (369)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEE--EEcCH
Confidence 99999999999998544 2 34899999999999999999999999999994 44554
No 76
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.91 E-value=3.8e-24 Score=212.66 Aligned_cols=151 Identities=19% Similarity=0.304 Sum_probs=114.6
Q ss_pred EEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-----------c
Q 005344 192 VIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-----------E 257 (701)
Q Consensus 192 I~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-----------E 257 (701)
+++|+++|+.. ...+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +.+++.. .
T Consensus 2 ~~~l~~~~~~~---~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~~~~ 76 (211)
T cd03225 2 LKNLSFSYPDG---ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE--VLVDGKDLTKLSLKELRRK 76 (211)
T ss_pred ceeEEEecCCC---CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCce--EEECCEEcccCCHHHHHhh
Confidence 67899999731 13588888 8999999999999999999999999999998886 3343321 0
Q ss_pred cccCCC-----CCCC-------------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEE
Q 005344 258 IGGDGD-----VPHS-------------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETI 299 (701)
Q Consensus 258 Ia~~~~-----ip~~-------------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVI 299 (701)
+++... ++.. ++.. .+...-.|+||+||++||++++.+|++|
T Consensus 77 i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 156 (211)
T cd03225 77 VGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDIL 156 (211)
T ss_pred ceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 111100 0000 0000 0111225789999999999999999999
Q ss_pred EEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCe
Q 005344 300 IIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 300 ILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~ 347 (701)
|+||||++||+.++..+ ++.|.++|++||+.+++..+||+++.+..|+
T Consensus 157 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 157 LLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999998544 3458999999999999999999999998874
No 77
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1e-23 Score=214.85 Aligned_cols=162 Identities=20% Similarity=0.319 Sum_probs=121.9
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
+.+++.|++++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|+
T Consensus 2 ~~l~~~~l~~~~~~-----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 2 NEIEFKEVSYSSFG-----KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred ceEEEEeEEEEeCC-----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 35789999999973 3588888 8999999999999999999999999999998885
Q ss_pred -EEEEEcCCcccccC--------CCCCC-------------CCCc-h--hhhccCCChhHHHHHHHHHHHccCCCEEEEc
Q 005344 248 -RVVIVDTSNEIGGD--------GDVPH-------------SGIG-R--ARRMQVPNVNMQHSVMIEAVENHMPETIIID 302 (701)
Q Consensus 248 -rViiVd~~~EIa~~--------~~ip~-------------~~ig-~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILD 302 (701)
.++++.+...+... ..... .++. . .+.....|+|++||++||++++.+|++||+|
T Consensus 77 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 156 (241)
T PRK14250 77 RKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLD 156 (241)
T ss_pred hcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 12222222111000 00000 0111 0 0111235789999999999999999999999
Q ss_pred CCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 303 EIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 303 EPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||+++||+.++..+ ++ .|.++|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~ 216 (241)
T PRK14250 157 EPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL--VEYAKT 216 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEE--EEeCCH
Confidence 99999999988554 33 489999999999999999999999999998 444444
No 78
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.91 E-value=8.2e-24 Score=211.54 Aligned_cols=154 Identities=18% Similarity=0.249 Sum_probs=117.0
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
+++++|++.|+.. ...+++++ +.+|++++|+||||||||||+++|+|++.|+.|. +.+++..
T Consensus 1 l~~~~l~~~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~--i~~~g~~~~~~~~~~~~ 75 (220)
T cd03263 1 LQIRNLTKTYKKG---TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT--AYINGYSIRTDRKAARQ 75 (220)
T ss_pred CEEEeeEEEeCCC---CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEECCEecccchHHHhh
Confidence 4688999999731 14688888 8999999999999999999999999999998885 3333321
Q ss_pred ccccCC----CCCCC-------------------------------CCchh--hhccCCChhHHHHHHHHHHHccCCCEE
Q 005344 257 EIGGDG----DVPHS-------------------------------GIGRA--RRMQVPNVNMQHSVMIEAVENHMPETI 299 (701)
Q Consensus 257 EIa~~~----~ip~~-------------------------------~ig~~--rr~~v~s~G~qQRV~IArAL~~~PdVI 299 (701)
.+++.. .++.. ++... ....-.|+||+||++||++++.+|++|
T Consensus 76 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 155 (220)
T cd03263 76 SLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVL 155 (220)
T ss_pred hEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 011100 00000 00000 011124679999999999999999999
Q ss_pred EEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 300 IIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 300 ILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
|+|||+++||+.+...+ ...+.++|++||+.+.+..+||+++.+.+|++
T Consensus 156 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i 210 (220)
T cd03263 156 LLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKL 210 (220)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 99999999999998554 12368999999999999999999999999998
No 79
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=7.4e-24 Score=220.54 Aligned_cols=162 Identities=20% Similarity=0.332 Sum_probs=122.4
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
++++.+|+++|+. ...+++++ +.+|++++|+||||||||||+++|+|++.|+.|+
T Consensus 4 ~l~~~~l~~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 79 (274)
T PRK13647 4 IIEVEDLHFRYKD----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRS 79 (274)
T ss_pred eEEEEEEEEEeCC----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHh
Confidence 6889999999962 23588888 8999999999999999999999999999998885
Q ss_pred EEEEEcCCcc--cccC---CCC---CC-CCCch--------------------hhhccCCChhHHHHHHHHHHHccCCCE
Q 005344 248 RVVIVDTSNE--IGGD---GDV---PH-SGIGR--------------------ARRMQVPNVNMQHSVMIEAVENHMPET 298 (701)
Q Consensus 248 rViiVd~~~E--Ia~~---~~i---p~-~~ig~--------------------~rr~~v~s~G~qQRV~IArAL~~~PdV 298 (701)
+|+++.+... +... ..+ .. .++.. .+...-.|+|++||++||+|++.+|++
T Consensus 80 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~l 159 (274)
T PRK13647 80 KVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDV 159 (274)
T ss_pred hEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 1333333211 0000 000 00 00000 001122477999999999999999999
Q ss_pred EEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 299 IIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 299 IILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||+||||++||+.++..+ ++.|.|||++||+++.+..+||+++++.+|++ +..+..
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 222 (274)
T PRK13647 160 IVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRV--LAEGDK 222 (274)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCH
Confidence 999999999999998544 44589999999999999999999999999998 444554
No 80
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.91 E-value=5.2e-24 Score=211.83 Aligned_cols=153 Identities=19% Similarity=0.282 Sum_probs=116.4
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
+++.+++++|+. ...+++++ +.+|++++|+||||||||||+++|+|++.|+.|. +++++.+
T Consensus 1 l~~~~l~~~~~~----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~i~~~~~~~~~ 74 (214)
T cd03292 1 IEFINVTKTYPN----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGT--IRVNGQDVSDLRGRAIP 74 (214)
T ss_pred CEEEEEEEEeCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE--EEECCEEcccCCHHHHH
Confidence 368899999962 23588888 8999999999999999999999999999998886 4444321
Q ss_pred ----ccccC----CCCCCC-------------CCch----------hh----------hccCCChhHHHHHHHHHHHccC
Q 005344 257 ----EIGGD----GDVPHS-------------GIGR----------AR----------RMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 257 ----EIa~~----~~ip~~-------------~ig~----------~r----------r~~v~s~G~qQRV~IArAL~~~ 295 (701)
.+++. ..++.. +... .. ...-.|+||+||++||++++++
T Consensus 75 ~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (214)
T cd03292 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNS 154 (214)
T ss_pred HHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcC
Confidence 01110 000100 0000 00 1112467999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 296 PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
|++||+||||++||+.++..+ .+.|.++|++||+.+.+..+||+++++..|++
T Consensus 155 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 155 PTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999988544 34589999999999999999999999998863
No 81
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.91 E-value=8.6e-24 Score=205.92 Aligned_cols=153 Identities=14% Similarity=0.192 Sum_probs=118.3
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc---------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE--------- 257 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E--------- 257 (701)
+++.+++++|+.. ...+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +.+++..-
T Consensus 1 i~~~~~~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~~ 75 (178)
T cd03247 1 LSINNVSFSYPEQ---EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGE--ITLDGVPVSDLEKALSS 75 (178)
T ss_pred CEEEEEEEEeCCC---CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCE--EEECCEEHHHHHHHHHh
Confidence 4688999999731 12578887 9999999999999999999999999999999997 56665421
Q ss_pred -cccCCCCCCC-CCchhhh-ccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEc
Q 005344 258 -IGGDGDVPHS-GIGRARR-MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAH 328 (701)
Q Consensus 258 -Ia~~~~ip~~-~ig~~rr-~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTH 328 (701)
+++....+.. ....... ....++|++||++||++++.+|++||+|||+++||+.+...+ ..+|.++|++||
T Consensus 76 ~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh 155 (178)
T cd03247 76 LISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITH 155 (178)
T ss_pred hEEEEccCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 1111111110 0000111 344688999999999999999999999999999999988544 124899999999
Q ss_pred ChhHHHHhcCcEEEEeCCeE
Q 005344 329 GMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 329 d~~l~~~l~drvlvl~~G~I 348 (701)
+.+++. .+|+++.+.+|++
T Consensus 156 ~~~~~~-~~d~~~~l~~g~i 174 (178)
T cd03247 156 HLTGIE-HMDKILFLENGKI 174 (178)
T ss_pred CHHHHH-hCCEEEEEECCEE
Confidence 999986 6999999999998
No 82
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.91 E-value=9.2e-24 Score=211.68 Aligned_cols=159 Identities=19% Similarity=0.262 Sum_probs=117.8
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
++++++|+++|+.. .....+++++ +.+|++++|+|||||||||||++|+|++.|+.|.
T Consensus 1 ~l~~~~v~~~~~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (228)
T cd03257 1 LLEVKNLSVSFPTG-GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKI 79 (228)
T ss_pred CeEEEeeeEeccCC-CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHH
Confidence 36799999999731 0012578888 8999999999999999999999999999998874
Q ss_pred ---EEEEEcCCcccccCC-------------CC-CC----------------CCCch---hhhccCCChhHHHHHHHHHH
Q 005344 248 ---RVVIVDTSNEIGGDG-------------DV-PH----------------SGIGR---ARRMQVPNVNMQHSVMIEAV 291 (701)
Q Consensus 248 ---rViiVd~~~EIa~~~-------------~i-p~----------------~~ig~---~rr~~v~s~G~qQRV~IArA 291 (701)
.++++.+...+.... .. .. .++.. .....-.|+||+||++||++
T Consensus 80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 159 (228)
T cd03257 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA 159 (228)
T ss_pred hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence 133333332100000 00 00 00000 00011246799999999999
Q ss_pred HccCCCEEEEcCCCCcccHHHHHHH-------Hhc-CCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 292 ENHMPETIIIDEIGTELEALAASTI-------AQR-GVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 292 L~~~PdVIILDEPtsgLD~~a~~~l-------~e~-GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
++.+|++||+||||++||+.++..+ ++. |.+||++||+.+.+..+||+++++..|++
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 224 (228)
T cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224 (228)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEE
Confidence 9999999999999999999998544 333 89999999999999999999999999997
No 83
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.91 E-value=8.9e-24 Score=214.29 Aligned_cols=160 Identities=20% Similarity=0.327 Sum_probs=120.5
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
++++.+|++.|+. ...+++++ +.+|++++|+||||||||||+++|+|+++|++|. +.+++.+
T Consensus 1 ~l~~~~l~~~~~~----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~--i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 1 MLEVENLSKVYPN----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGS--ILLEGTDITKLRGKKL 74 (243)
T ss_pred CeEEEeeeeecCC----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccE--EEECCEEhhhCCHHHH
Confidence 3679999999961 23588888 8999999999999999999999999999998886 4444321
Q ss_pred -----ccccC----CCCCCC---------------------CC-ch---------hh----------hccCCChhHHHHH
Q 005344 257 -----EIGGD----GDVPHS---------------------GI-GR---------AR----------RMQVPNVNMQHSV 286 (701)
Q Consensus 257 -----EIa~~----~~ip~~---------------------~i-g~---------~r----------r~~v~s~G~qQRV 286 (701)
.+++. ..++.. .. .. .. ...-.|+||+||+
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 154 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRV 154 (243)
T ss_pred HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 01100 000000 00 00 00 1112477999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||++++.+|++||+||||++||+.++..+ .+ .|.++|++||+.+.+..+||+++.+.+|++ +..++.
T Consensus 155 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i--~~~~~~ 230 (243)
T TIGR02315 155 AIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI--VFDGAP 230 (243)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE--EecCCH
Confidence 999999999999999999999999988544 23 489999999999999999999999999998 444544
No 84
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=6.7e-24 Score=231.15 Aligned_cols=160 Identities=18% Similarity=0.246 Sum_probs=123.9
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
.++++++++++|+. ..+++++ +.+|++++|+||||||||||||+|+|++.|+.|. +++++..
T Consensus 18 ~~l~l~~v~~~~~~-----~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~--I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 18 PLLEIRNLTKSFDG-----QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQ--IMLDGVDLSHVPPYQ 90 (377)
T ss_pred ceEEEEeEEEEECC-----EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE--EEECCEECCCCCHHH
Confidence 36899999999973 3578877 8999999999999999999999999999999885 4444321
Q ss_pred -ccccC----CCCCCCCC-------------ch--------------------hhhccCCChhHHHHHHHHHHHccCCCE
Q 005344 257 -EIGGD----GDVPHSGI-------------GR--------------------ARRMQVPNVNMQHSVMIEAVENHMPET 298 (701)
Q Consensus 257 -EIa~~----~~ip~~~i-------------g~--------------------~rr~~v~s~G~qQRV~IArAL~~~PdV 298 (701)
.+++. ..+|+..+ .. .+...-.|+|||||++||++|+.+|++
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~l 170 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL 170 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 01110 11222100 00 001112578999999999999999999
Q ss_pred EEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 299 IIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 299 IILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++|||+++||+..+..+ ++.|.|+|++||+.+++..++|++++|.+|++. ..+++
T Consensus 171 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~--~~g~~ 234 (377)
T PRK11607 171 LLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV--QIGEP 234 (377)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEE--EEcCH
Confidence 999999999999998544 345999999999999999999999999999994 45555
No 85
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=1.1e-23 Score=213.85 Aligned_cols=159 Identities=23% Similarity=0.343 Sum_probs=121.4
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
++++++++++|+. ..+++++ +.+|++++|+|+||||||||+++|+|++.|+.|. +++++.+
T Consensus 1 ~l~~~~l~~~~~~-----~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 1 MIEFKNVSKHFGP-----TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGD--LIVDGLKVNDPKVDER 73 (240)
T ss_pred CEEEEeEEEEECC-----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCEECCcCChhHH
Confidence 3689999999973 3588888 8999999999999999999999999999998885 4444321
Q ss_pred ----ccccC----CCCCCC--------------CCch----------hh----------hccCCChhHHHHHHHHHHHcc
Q 005344 257 ----EIGGD----GDVPHS--------------GIGR----------AR----------RMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 ----EIa~~----~~ip~~--------------~ig~----------~r----------r~~v~s~G~qQRV~IArAL~~ 294 (701)
.+++. ..++.. .... .. ...-.|+|++||++||++++.
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~ 153 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV 153 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc
Confidence 01100 000000 0000 00 111246799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+||||++||+.++..+ ++.|.++|++||+.+++..+||+++++.+|++ +..++.
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 220 (240)
T PRK09493 154 KPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRI--AEDGDP 220 (240)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EeeCCH
Confidence 9999999999999999998554 44689999999999999999999999999998 444444
No 86
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=213.84 Aligned_cols=159 Identities=19% Similarity=0.250 Sum_probs=121.5
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
++++++|+++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +.+++.+
T Consensus 3 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~ 75 (241)
T PRK10895 3 TLTAKNLAKAYKG-----RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGN--IIIDDEDISLLPLHAR 75 (241)
T ss_pred eEEEeCcEEEeCC-----EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEECCEECCCCCHHHH
Confidence 6889999999973 3688888 8999999999999999999999999999998885 3443311
Q ss_pred ---ccccCC----CCCC-------------C-CCch----------hh----------hccCCChhHHHHHHHHHHHccC
Q 005344 257 ---EIGGDG----DVPH-------------S-GIGR----------AR----------RMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 257 ---EIa~~~----~ip~-------------~-~ig~----------~r----------r~~v~s~G~qQRV~IArAL~~~ 295 (701)
.+++.. .++. . .... .. ...-.|+|++||++||++++.+
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (241)
T PRK10895 76 ARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAAN 155 (241)
T ss_pred HHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcC
Confidence 011000 0000 0 0000 00 1112477999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 296 PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||+||||++||+.++..+ ++.|.++|++||+.+.+..+||+++.+..|++ +..++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i--~~~~~~ 221 (241)
T PRK10895 156 PKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHL--IAHGTP 221 (241)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeE--EeeCCH
Confidence 999999999999999988543 45699999999999999999999999999998 334444
No 87
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.91 E-value=9.9e-24 Score=212.55 Aligned_cols=158 Identities=20% Similarity=0.246 Sum_probs=120.4
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
+++++|++.|+. ..+++++ +.+|++++|+|+||||||||+++|+|++.|+.|. +.+++.+
T Consensus 1 l~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~~ 73 (230)
T TIGR03410 1 LEVSNLNVYYGQ-----SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGS--IRLDGEDITKLPPHERA 73 (230)
T ss_pred CEEEeEEEEeCC-----eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE--EEECCEECCCCCHHHHH
Confidence 468999999973 3688888 8999999999999999999999999999998886 4444321
Q ss_pred --ccccCC----CCCCC-------------CCch-------h-----------hhccCCChhHHHHHHHHHHHccCCCEE
Q 005344 257 --EIGGDG----DVPHS-------------GIGR-------A-----------RRMQVPNVNMQHSVMIEAVENHMPETI 299 (701)
Q Consensus 257 --EIa~~~----~ip~~-------------~ig~-------~-----------rr~~v~s~G~qQRV~IArAL~~~PdVI 299 (701)
.+++.. .++.. .... . ....-.|+|++||++|+++++.+|++|
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~il 153 (230)
T TIGR03410 74 RAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL 153 (230)
T ss_pred HhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 011100 00100 0000 0 011124779999999999999999999
Q ss_pred EEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 300 IIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 300 ILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|+|||+++||+.++..+ ++ .|.|+|++||+.+.+..+||+++++..|++ +..++.
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i--~~~~~~ 216 (230)
T TIGR03410 154 LLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRV--VASGAG 216 (230)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCH
Confidence 99999999999998654 33 489999999999999999999999999998 444544
No 88
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.91 E-value=9.9e-24 Score=215.08 Aligned_cols=159 Identities=25% Similarity=0.316 Sum_probs=121.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
++++++|+++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|. +.+++..
T Consensus 3 ~l~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~ 75 (250)
T PRK11264 3 AIEVKNLVKKFHG-----QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT--IRVGDITIDTARSLSQ 75 (250)
T ss_pred cEEEeceEEEECC-----eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE--EEECCEEccccccccc
Confidence 5889999999973 3588888 8999999999999999999999999999998885 3333210
Q ss_pred ----------ccccC----CCCCCC--------------CCch----------hh----------hccCCChhHHHHHHH
Q 005344 257 ----------EIGGD----GDVPHS--------------GIGR----------AR----------RMQVPNVNMQHSVMI 288 (701)
Q Consensus 257 ----------EIa~~----~~ip~~--------------~ig~----------~r----------r~~v~s~G~qQRV~I 288 (701)
.+++. ..++.. .... .. ...-.|+||+||++|
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~l 155 (250)
T PRK11264 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAI 155 (250)
T ss_pred hhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHH
Confidence 01100 000000 0000 00 111246799999999
Q ss_pred HHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 289 EAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 289 ArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++++.+|++||+||||++||+.++..+ .+.|.++|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 156 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i--~~~~~~ 228 (250)
T PRK11264 156 ARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI--VEQGPA 228 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE--EEeCCH
Confidence 9999999999999999999999998554 34699999999999999999999999999998 434444
No 89
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.91 E-value=4.4e-24 Score=239.08 Aligned_cols=186 Identities=20% Similarity=0.302 Sum_probs=141.1
Q ss_pred ccceEEEEeEEEEECccc------ccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc
Q 005344 186 RNRKMQVIGLTCRVGRAV------AGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN 256 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v------~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~ 256 (701)
..+.+++.||+++|.... .+...+++++ +.+||+++|+|++|||||||.|+|+|++.|++|. +++++.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~--i~~~g~~ 354 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGS--IIFDGQD 354 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEEeCcc
Confidence 456788999999998421 2345788998 8999999999999999999999999999998886 4444432
Q ss_pred -------------cccc------CCCCCCCCCc--------------hh---------------------hhccCCChhH
Q 005344 257 -------------EIGG------DGDVPHSGIG--------------RA---------------------RRMQVPNVNM 282 (701)
Q Consensus 257 -------------EIa~------~~~ip~~~ig--------------~~---------------------rr~~v~s~G~ 282 (701)
.++. ....|+..++ .. +.-.-.|+|+
T Consensus 355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQ 434 (539)
T COG1123 355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQ 434 (539)
T ss_pred cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcch
Confidence 0100 0111221100 00 0011247899
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecC
Q 005344 283 QHSVMIEAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLG 354 (701)
Q Consensus 283 qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lg 354 (701)
+||++||+||+.+|++||+|||++.||+..+..+ .+.|.|.|++|||+..+..+||++++|..|+| |+.|
T Consensus 435 rQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~i--VE~G 512 (539)
T COG1123 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRI--VEEG 512 (539)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeE--EEeC
Confidence 9999999999999999999999999999988554 45699999999999999999999999999999 8788
Q ss_pred cHHHHhhhhHHHHhhccCCCcceeeeeee
Q 005344 355 DEEAKKRKVQKTILERKGPPTFTCAVEMI 383 (701)
Q Consensus 355 d~~a~~r~~qe~Iler~~~p~f~~~vev~ 383 (701)
+. +.+.+.+.+++.+.++..+
T Consensus 513 ~~--------~~v~~~p~h~Ytr~L~~av 533 (539)
T COG1123 513 PT--------EKVFENPQHPYTRKLLAAV 533 (539)
T ss_pred CH--------HHHhcCCCChHHHHHHHhc
Confidence 66 4466777777766555443
No 90
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=6.2e-24 Score=205.90 Aligned_cols=152 Identities=16% Similarity=0.277 Sum_probs=115.8
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccc-------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIG------- 259 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa------- 259 (701)
+++++++++|+.. ...+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +++++.+--.
T Consensus 1 l~~~~l~~~~~~~---~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~--i~~~g~~~~~~~~~~~~ 75 (171)
T cd03228 1 IEFKNVSFSYPGR---PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGE--ILIDGVDLRDLDLESLR 75 (171)
T ss_pred CEEEEEEEEcCCC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCE--EEECCEEhhhcCHHHHH
Confidence 4688999999731 12578887 8999999999999999999999999999999997 5666532100
Q ss_pred -cCCCCCCC-CCch-hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcCh
Q 005344 260 -GDGDVPHS-GIGR-ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGM 330 (701)
Q Consensus 260 -~~~~ip~~-~ig~-~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~ 330 (701)
..+.+++. .+-. .-.-.+.|.|++||++||++++.+|++||+|||+++||+.++..+ ...+.++|++||+.
T Consensus 76 ~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~ 155 (171)
T cd03228 76 KNIAYVPQDPFLFSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRL 155 (171)
T ss_pred hhEEEEcCCchhccchHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 00111110 0000 001112788999999999999999999999999999999988554 12478999999999
Q ss_pred hHHHHhcCcEEEEeCCe
Q 005344 331 TIDNIVKNPSLQILVGG 347 (701)
Q Consensus 331 ~l~~~l~drvlvl~~G~ 347 (701)
+.+.. ||+++.+.+|+
T Consensus 156 ~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 156 STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHh-CCEEEEEcCCC
Confidence 99987 99999998874
No 91
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=9.2e-24 Score=213.96 Aligned_cols=161 Identities=14% Similarity=0.192 Sum_probs=123.2
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc-------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE------- 257 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E------- 257 (701)
.++++++|+++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|++|. +.+++..-
T Consensus 4 ~~l~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~--i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 4 VMLSFDKVSAHYGK-----IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGR--IVFDGKDITDWQTAK 76 (237)
T ss_pred cEEEEEeEEEeeCC-----ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCce--EEECCEecCCCCHHH
Confidence 46899999999973 3688888 8999999999999999999999999999998885 33443210
Q ss_pred -----cccCC----CCCCC-------------CCch--------hh-----------hccCCChhHHHHHHHHHHHccCC
Q 005344 258 -----IGGDG----DVPHS-------------GIGR--------AR-----------RMQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 258 -----Ia~~~----~ip~~-------------~ig~--------~r-----------r~~v~s~G~qQRV~IArAL~~~P 296 (701)
+++.. .++.. .... .. ...-.|+|++||++||++++.+|
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 10000 00000 0000 00 11124779999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 297 ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
++||+||||++||+.++..+ .+.|.|+|++||+.+.+..+||+++++.+|++ +..++.+
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~~ 222 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHV--VLEDTGD 222 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEE--EeeCCHH
Confidence 99999999999999998544 45699999999999999999999999999998 5556553
No 92
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.91 E-value=5.7e-24 Score=222.44 Aligned_cols=209 Identities=29% Similarity=0.449 Sum_probs=159.3
Q ss_pred EEEEEeCCCceEEecCCCceeeccccCCHHHHHHHHHHHhcccc-----cCCCcc--ccccchhhhhccc------eE--
Q 005344 126 IEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSD-----DNRSGI--DRSLHRISAIRNR------KM-- 190 (701)
Q Consensus 126 ~EI~L~~GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs~-----d~R~Gi--~rtghRIs~ir~~------~I-- 190 (701)
+||+|+.|||.+..+.....+...+.+|.+++..+++.++.|+. +...|+ .++|||+.-...+ .+
T Consensus 1 ~eiri~inrP~~v~~~~~~~~~~~~~lt~~~l~~l~~~la~~s~~~~~~~~~~~~~tlpgG~Rv~i~~~p~~~~g~v~tI 80 (270)
T TIGR02858 1 EEIRIRVGRPLELVFDGEEVFVTDYIPTVEDVNYILQLISNYSLYAFEEELKQGYITIEGGHRVGLAGRCVTENGKVKTI 80 (270)
T ss_pred CeEEEECCCCCEEEECCCCEEEecccCCHHHHHHHHHHHHhccccccccccccceEEcCCCcEEEEEccceecCCEEEEE
Confidence 59999999999999988877777667999999999999999883 344454 3788999621111 11
Q ss_pred -EEEeEEEEECcccccccc-eeccccccC--CEEEEEcCCCCcHHHHHHHHHhcCCCCCC------cEEEEEcCCccccc
Q 005344 191 -QVIGLTCRVGRAVAGSAE-IICDLVEGG--GSILVIGPPGVGKTTLIREIARMLADDHM------KRVVIVDTSNEIGG 260 (701)
Q Consensus 191 -eI~nLs~rygr~v~G~~~-~L~dlI~~G--eiilIIGPNGSGKTTLLR~IaGlLsp~~G------krViiVd~~~EIa~ 260 (701)
.+..+++|..+...+... .+..+...| .+++|+||||||||||+++|+|+++++.| ++|..++...|++.
T Consensus 81 R~~s~~~~r~~~~~~~~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~ 160 (270)
T TIGR02858 81 KNVSSLNIRIAREKLGAADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAG 160 (270)
T ss_pred EcccccEEEeccccCCcHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHH
Confidence 134566776655445433 344445555 68999999999999999999999999865 45666666667754
Q ss_pred C-CCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChhHHHHh
Q 005344 261 D-GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336 (701)
Q Consensus 261 ~-~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~l~~~l 336 (701)
. ..+++..++. ++++.+.+.|...|++.+++++|++||+|||++..+..+.....+.|+++|+|+|+.++.+..
T Consensus 161 ~~~~~~q~~~~~--r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~~~~~ 235 (270)
T TIGR02858 161 CVNGVPQHDVGI--RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDVEDLY 235 (270)
T ss_pred Hhcccccccccc--cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHHHHHH
Confidence 3 4567776664 677888888898999999999999999999998877777666666899999999988775443
No 93
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.91 E-value=1.3e-23 Score=213.06 Aligned_cols=158 Identities=21% Similarity=0.333 Sum_probs=119.0
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
++++.+++++|+. ..+++++ +.+|++++|+||||||||||+++|+|+++|++|. +.+++.+
T Consensus 1 ~l~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~--i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 1 ALEVAGLSFAYGA-----RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQ--ISVAGHDLRRAPRAAL 73 (236)
T ss_pred CEEEEeeEEEECC-----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceE--EEECCEEcccCChhhh
Confidence 3679999999973 3588888 8999999999999999999999999999999885 3333321
Q ss_pred -ccccCCCC----CCC-------------CCch----------hhh----------ccCCChhHHHHHHHHHHHccCCCE
Q 005344 257 -EIGGDGDV----PHS-------------GIGR----------ARR----------MQVPNVNMQHSVMIEAVENHMPET 298 (701)
Q Consensus 257 -EIa~~~~i----p~~-------------~ig~----------~rr----------~~v~s~G~qQRV~IArAL~~~PdV 298 (701)
.+++.... +.. .... ... ..-.|+||+||++||++++.+|++
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 01110000 000 0000 001 112477999999999999999999
Q ss_pred EEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 299 IIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 299 IILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||+|||+++||+.++..+ + +.|.++|++||+.+.+.. ||+++++.+|++ +..++.
T Consensus 154 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i--~~~~~~ 216 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRV--LADGAA 216 (236)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeE--EEeCCH
Confidence 999999999999998554 3 358999999999999975 999999999998 334444
No 94
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.91 E-value=1.1e-23 Score=218.49 Aligned_cols=160 Identities=20% Similarity=0.262 Sum_probs=121.5
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
.+++++||+++|+. ..+++++ +.+|++++|+|||||||||||++|+|+++|+.|. +.+++.+
T Consensus 6 ~~l~~~~l~~~~~~-----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 6 NLVDMRGVSFTRGN-----RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGE--ILFDGENIPAMSRSR 78 (269)
T ss_pred ceEEEeCeEEEECC-----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEECCEEccccChhh
Confidence 46889999999973 3588888 8999999999999999999999999999998875 3343311
Q ss_pred ------ccccC----CCCCCC--------------CCch----------hhh----------ccCCChhHHHHHHHHHHH
Q 005344 257 ------EIGGD----GDVPHS--------------GIGR----------ARR----------MQVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 257 ------EIa~~----~~ip~~--------------~ig~----------~rr----------~~v~s~G~qQRV~IArAL 292 (701)
.+++. ..++.. .... ... ..-.|+||+||++||+++
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral 158 (269)
T PRK11831 79 LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAI 158 (269)
T ss_pred HHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 01110 000000 0000 001 112477999999999999
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 293 NHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+.+|++||+||||++||+.++..+ .+ .|.++|++||+.+.+..+||+++.+.+|++ +..++.
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i--~~~g~~ 228 (269)
T PRK11831 159 ALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKI--VAHGSA 228 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEE--EEeCCH
Confidence 999999999999999999998644 23 389999999999999999999999999998 334444
No 95
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.4e-23 Score=215.30 Aligned_cols=162 Identities=22% Similarity=0.322 Sum_probs=122.2
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
++++++|++++|+. ..+|+++ +.+|++++|+|+||||||||+++|+|++.|++|.
T Consensus 1 ~~l~~~~l~~~~~~-----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (255)
T PRK11231 1 MTLRTENLTVGYGT-----KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75 (255)
T ss_pred CEEEEEeEEEEECC-----EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHh
Confidence 36889999999973 3688888 8999999999999999999999999999998885
Q ss_pred -EEEEEcCCcccccC---------CCCC---CCC------------------Cch--hhhccCCChhHHHHHHHHHHHcc
Q 005344 248 -RVVIVDTSNEIGGD---------GDVP---HSG------------------IGR--ARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 -rViiVd~~~EIa~~---------~~ip---~~~------------------ig~--~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
.++++.+...+... .... ... +.. .......|+||+||++||++++.
T Consensus 76 ~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 155 (255)
T PRK11231 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ 155 (255)
T ss_pred hheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc
Confidence 13333332111000 0000 000 000 00111257799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+|||+++||+.++..+ ...|.++|++||+.+.+..+||+++++.+|++. ..++.
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~--~~~~~ 222 (255)
T PRK11231 156 DTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM--AQGTP 222 (255)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE--EEcCH
Confidence 9999999999999999998544 345899999999999999999999999999983 34444
No 96
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.3e-23 Score=214.68 Aligned_cols=161 Identities=19% Similarity=0.244 Sum_probs=122.1
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE------ 257 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E------ 257 (701)
..+++++|++++|+. ..+|+++ +.+|++++|+||||||||||+++|+|+++|++|. +.+++..-
T Consensus 3 ~~~l~~~~l~~~~~~-----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~--i~~~g~~~~~~~~~ 75 (255)
T PRK11300 3 QPLLSVSGLMMRFGG-----LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGT--ILLRGQHIEGLPGH 75 (255)
T ss_pred CceEEEeeEEEEECC-----EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcce--EEECCEECCCCCHH
Confidence 446899999999973 3688888 8999999999999999999999999999999885 33333210
Q ss_pred ------cccC----CCCCCC--------------------C---------C--c---hh----hhcc----------CCC
Q 005344 258 ------IGGD----GDVPHS--------------------G---------I--G---RA----RRMQ----------VPN 279 (701)
Q Consensus 258 ------Ia~~----~~ip~~--------------------~---------i--g---~~----rr~~----------v~s 279 (701)
+.+. ..++.. + . . .. ..++ -.|
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS 155 (255)
T PRK11300 76 QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLA 155 (255)
T ss_pred HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCC
Confidence 0000 000000 0 0 0 00 0111 247
Q ss_pred hhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEE
Q 005344 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESV 351 (701)
Q Consensus 280 ~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V 351 (701)
+||+||++||++++.+|++||+||||++||+.++..+ ++ .|.+||++||+.+.+..+||+++++.+|++ +
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i--~ 233 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTP--L 233 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeE--E
Confidence 7999999999999999999999999999999998544 33 389999999999999999999999999998 4
Q ss_pred ecCcH
Q 005344 352 TLGDE 356 (701)
Q Consensus 352 ~lgd~ 356 (701)
..++.
T Consensus 234 ~~~~~ 238 (255)
T PRK11300 234 ANGTP 238 (255)
T ss_pred ecCCH
Confidence 44554
No 97
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.3e-23 Score=212.66 Aligned_cols=159 Identities=21% Similarity=0.335 Sum_probs=119.8
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
+++.||+++|+. ...+++++ +.+|++++|+||||||||||+++|+|++.|+.|. +++++.+
T Consensus 1 l~~~~l~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~--i~~~g~~~~~~~~~~~~ 74 (241)
T cd03256 1 IEVENLSKTYPN----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGS--VLIDGTDINKLKGKALR 74 (241)
T ss_pred CEEeeEEEecCC----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCce--EEECCEeccccCHhHHH
Confidence 368899999973 13588888 8999999999999999999999999999998886 4444321
Q ss_pred ----ccccC----CCCCCC---------------------CC-ch---------hhh----------ccCCChhHHHHHH
Q 005344 257 ----EIGGD----GDVPHS---------------------GI-GR---------ARR----------MQVPNVNMQHSVM 287 (701)
Q Consensus 257 ----EIa~~----~~ip~~---------------------~i-g~---------~rr----------~~v~s~G~qQRV~ 287 (701)
.+++. ..++.. .. .. ... ..-.|+||+||++
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 154 (241)
T cd03256 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVA 154 (241)
T ss_pred HHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHH
Confidence 01100 000000 00 00 001 1124679999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||++++.+|++||+||||++||+.++..+ ++ .|.+||++||+.+.+..+||+++++.+|++ +..++.
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i--~~~~~~ 229 (241)
T cd03256 155 IARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI--VFDGPP 229 (241)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EeecCH
Confidence 99999999999999999999999998544 33 489999999999999999999999999998 444544
No 98
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1e-23 Score=217.44 Aligned_cols=155 Identities=22% Similarity=0.302 Sum_probs=117.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcE-------------EEEE
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-------------VVIV 252 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gkr-------------ViiV 252 (701)
++++++|+++|+. ..+++++ +.+|++++|+|||||||||||++|+|++.|++|+- ++++
T Consensus 1 ml~~~~l~~~~~~-----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v 75 (255)
T PRK11248 1 MLQISHLYADYGG-----KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75 (255)
T ss_pred CEEEEEEEEEeCC-----eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEE
Confidence 4789999999973 3588888 89999999999999999999999999999988861 2233
Q ss_pred cCCccccc-C--------C----CCCC-------------CCCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCC
Q 005344 253 DTSNEIGG-D--------G----DVPH-------------SGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304 (701)
Q Consensus 253 d~~~EIa~-~--------~----~ip~-------------~~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEP 304 (701)
.+...+.. . . .... .++.. .+...-.|+||+||++||++++.+|++||+|||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEP 155 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEP 155 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 32211100 0 0 0000 00000 001112478999999999999999999999999
Q ss_pred CCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEe--CCeE
Q 005344 305 GTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQIL--VGGI 348 (701)
Q Consensus 305 tsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~--~G~I 348 (701)
|++||+.++..+ ++.|.++|++||+.+.+..+||+++++. .|++
T Consensus 156 t~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i 209 (255)
T PRK11248 156 FGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRV 209 (255)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEE
Confidence 999999998544 2248999999999999999999999998 4887
No 99
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.91 E-value=1.5e-23 Score=215.35 Aligned_cols=160 Identities=24% Similarity=0.321 Sum_probs=122.1
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
.++++++|+++|+. ..+++++ +.+|++++|+|+||||||||+++|+|++.|+.|+ +.+++..
T Consensus 4 ~~l~~~~l~~~~~~-----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~--i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 4 NKLNVIDLHKRYGE-----HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGS--IVVNGQTINLVRDKD 76 (257)
T ss_pred ccEEEeeeEEEECC-----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE--EEECCEEcccccccc
Confidence 45789999999973 3588888 8999999999999999999999999999998885 3343311
Q ss_pred ----------------ccccC----CCCCC--------------------------------CCCch---hhhccCCChh
Q 005344 257 ----------------EIGGD----GDVPH--------------------------------SGIGR---ARRMQVPNVN 281 (701)
Q Consensus 257 ----------------EIa~~----~~ip~--------------------------------~~ig~---~rr~~v~s~G 281 (701)
.+++. ..++. .++.. .......|+|
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G 156 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGG 156 (257)
T ss_pred cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 01100 00000 00000 0011224779
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecC
Q 005344 282 MQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLG 354 (701)
Q Consensus 282 ~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lg 354 (701)
++||++||++++.+|++||+||||++||+.+...+ ++.|.++|++||+.+++..+||+++++.+|++ +..+
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~~ 234 (257)
T PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI--EEEG 234 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE--EEeC
Confidence 99999999999999999999999999999998544 44699999999999999999999999999998 4344
Q ss_pred cH
Q 005344 355 DE 356 (701)
Q Consensus 355 d~ 356 (701)
..
T Consensus 235 ~~ 236 (257)
T PRK10619 235 AP 236 (257)
T ss_pred CH
Confidence 43
No 100
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.5e-23 Score=213.03 Aligned_cols=160 Identities=21% Similarity=0.340 Sum_probs=122.3
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
|+++++++++.|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +.+++..
T Consensus 1 ~~l~~~~l~~~~~~-----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~ 73 (242)
T PRK11124 1 MSIQLNGINCFYGA-----HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT--LNIAGNHFDFSKTPS 73 (242)
T ss_pred CEEEEEeeEEEECC-----eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCEecccccccc
Confidence 36889999999973 3688888 8999999999999999999999999999998886 4444321
Q ss_pred ---------ccccCC----CCCCC--------------CCch----------hh----------hccCCChhHHHHHHHH
Q 005344 257 ---------EIGGDG----DVPHS--------------GIGR----------AR----------RMQVPNVNMQHSVMIE 289 (701)
Q Consensus 257 ---------EIa~~~----~ip~~--------------~ig~----------~r----------r~~v~s~G~qQRV~IA 289 (701)
.+++.. .++.. +... .. ...-.|+|++||++||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred hhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 011100 00000 0000 00 1112467999999999
Q ss_pred HHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 290 AVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 290 rAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++++.+|++||+|||+++||+.++..+ .+.|.|+|++||+...+..+||+++++.+|++ +..++.
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i--~~~~~~ 225 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHI--VEQGDA 225 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEE--EEeCCH
Confidence 999999999999999999999998544 34699999999999999999999999999998 334444
No 101
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.91 E-value=6.9e-24 Score=223.65 Aligned_cols=146 Identities=25% Similarity=0.287 Sum_probs=111.7
Q ss_pred cceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------ccccCC----CCCCC--
Q 005344 207 AEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN----------EIGGDG----DVPHS-- 267 (701)
Q Consensus 207 ~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~----------EIa~~~----~ip~~-- 267 (701)
..+|+++ +.+|++++|+||||||||||+++|+|++.|++|. +.+++.+ .+++.. ..+..
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~--i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGT--ARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 3577777 8899999999999999999999999999999886 4444321 111110 00000
Q ss_pred -----------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH
Q 005344 268 -----------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI 316 (701)
Q Consensus 268 -----------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l 316 (701)
++.. .+...-.|+|||||++||+|++++|++||+||||++||+.++..+
T Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 163 (302)
T TIGR01188 84 RENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163 (302)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 0000 011122578999999999999999999999999999999998544
Q ss_pred -------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 317 -------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 317 -------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++.|.|||++||+++++..+||+++++.+|++ +..++.
T Consensus 164 ~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i--~~~g~~ 208 (302)
T TIGR01188 164 WDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRI--IAEGTP 208 (302)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE--EEECCH
Confidence 45699999999999999999999999999998 445554
No 102
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.91 E-value=1.2e-23 Score=212.34 Aligned_cols=158 Identities=25% Similarity=0.354 Sum_probs=119.3
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
+++++|+++|+. ..+++++ +.+|++++|+|||||||||||++|+|++.|+.|+ +.+++.+
T Consensus 1 l~~~~l~~~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~--i~~~g~~~~~~~~~~~~ 73 (236)
T cd03219 1 LEVRGLTKRFGG-----LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGS--VLFDGEDITGLPPHEIA 73 (236)
T ss_pred CeeeeeEEEECC-----EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCce--EEECCEECCCCCHHHHH
Confidence 368899999973 3588888 8999999999999999999999999999998885 3333311
Q ss_pred --ccccC----CCCCCC--------------CC-----------c----h----hhhc----------cCCChhHHHHHH
Q 005344 257 --EIGGD----GDVPHS--------------GI-----------G----R----ARRM----------QVPNVNMQHSVM 287 (701)
Q Consensus 257 --EIa~~----~~ip~~--------------~i-----------g----~----~rr~----------~v~s~G~qQRV~ 287 (701)
.+++. ..++.. .. . . ...+ .-.|+||+||++
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 153 (236)
T cd03219 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLE 153 (236)
T ss_pred hcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHH
Confidence 01100 000000 00 0 0 0011 124679999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||++++.+|++||+||||++||+.++..+ ++.|.++|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 154 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i--~~~~~~ 227 (236)
T cd03219 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRV--IAEGTP 227 (236)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEE--EeecCH
Confidence 99999999999999999999999988544 34689999999999999999999999999998 434443
No 103
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.91 E-value=1.1e-23 Score=207.71 Aligned_cols=137 Identities=18% Similarity=0.101 Sum_probs=112.7
Q ss_pred EeEEEEECcccccccceeccc--cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCc
Q 005344 193 IGLTCRVGRAVAGSAEIICDL--VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIG 270 (701)
Q Consensus 193 ~nLs~rygr~v~G~~~~L~dl--I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig 270 (701)
.||+++|+. ..++.+. +.+|++++|+||||||||||+|+|+|++.|+.|. +.+++. .++. .++.
T Consensus 4 ~~l~~~~~~-----~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~-~i~~---~~q~--- 69 (177)
T cd03222 4 PDCVKRYGV-----FFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN--DEWDGI-TPVY---KPQY--- 69 (177)
T ss_pred CCeEEEECC-----EEEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcE--EEECCE-EEEE---Eccc---
Confidence 478899974 3566665 7899999999999999999999999999999998 566653 2221 1110
Q ss_pred hhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hhc-CCEEEEEEcChhHHHHhcCcEEE
Q 005344 271 RARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQR-GVQLVGTAHGMTIDNIVKNPSLQ 342 (701)
Q Consensus 271 ~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~-GvtVIiTTHd~~l~~~l~drvlv 342 (701)
...|+||+||++||++++.+|+++|+|||+++||+..+..+ +++ |.++|++||+.+.+..+||+++.
T Consensus 70 -----~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~ 144 (177)
T cd03222 70 -----IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHV 144 (177)
T ss_pred -----CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEE
Confidence 01789999999999999999999999999999999987543 344 49999999999999999999999
Q ss_pred EeCCeE
Q 005344 343 ILVGGI 348 (701)
Q Consensus 343 l~~G~I 348 (701)
+.++..
T Consensus 145 l~~~~~ 150 (177)
T cd03222 145 FEGEPG 150 (177)
T ss_pred EcCCCc
Confidence 987654
No 104
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.5e-23 Score=218.18 Aligned_cols=165 Identities=18% Similarity=0.209 Sum_probs=122.3
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
|.+++.+|+++|+........+|+++ +.+|++++|+|||||||||||++|+|++.|++|+ +.+++.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~--i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 1 MGINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGS--VRVDDTLITSTSKNK 78 (280)
T ss_pred CeEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCEEcccccccc
Confidence 35789999999973210113578888 8999999999999999999999999999998876 3343311
Q ss_pred -------ccccCCC-----CCC-------------------------------CCCch---hhhccCCChhHHHHHHHHH
Q 005344 257 -------EIGGDGD-----VPH-------------------------------SGIGR---ARRMQVPNVNMQHSVMIEA 290 (701)
Q Consensus 257 -------EIa~~~~-----ip~-------------------------------~~ig~---~rr~~v~s~G~qQRV~IAr 290 (701)
.+++... +.. .++.. .....-.|+||+||++||+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~ 158 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAG 158 (280)
T ss_pred CHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 0111000 000 00100 0011124679999999999
Q ss_pred HHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 291 VENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 291 AL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+++.+|++||+||||++||+.++..+ ++.|.+||++||+.+.+..+||+++++.+|++ +..++.
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 229 (280)
T PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKL--VLSGKP 229 (280)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 99999999999999999999998554 34589999999999999999999999999998 334444
No 105
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.5e-23 Score=223.59 Aligned_cols=168 Identities=17% Similarity=0.212 Sum_probs=125.7
Q ss_pred ccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc------
Q 005344 186 RNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN------ 256 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~------ 256 (701)
...++++++|+++|+........+|+++ |.+|++++|+|+||||||||+++|+|++.|++|+ +.+++..
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~--I~i~g~~~~~~~~ 95 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGT--IQVGDIYIGDKKN 95 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe--EEECCEEcccccc
Confidence 3456899999999973211123589988 8999999999999999999999999999998886 4444210
Q ss_pred ---------------------ccccCCCCC------C------------C------------------CCch---hhhcc
Q 005344 257 ---------------------EIGGDGDVP------H------------S------------------GIGR---ARRMQ 276 (701)
Q Consensus 257 ---------------------EIa~~~~ip------~------------~------------------~ig~---~rr~~ 276 (701)
.++.....+ . . ++.. .+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 011100000 0 0 0000 00111
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 277 VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 277 v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
-.|+|++||++||++++++|++||+||||++||+.++..+ .+.|.|||++||+++.+..+||+++++..|++
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i- 254 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI- 254 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE-
Confidence 2477999999999999999999999999999999998544 35699999999999999999999999999998
Q ss_pred EEecCcHH
Q 005344 350 SVTLGDEE 357 (701)
Q Consensus 350 ~V~lgd~~ 357 (701)
+..|+.+
T Consensus 255 -~~~g~~~ 261 (320)
T PRK13631 255 -LKTGTPY 261 (320)
T ss_pred -EEeCCHH
Confidence 5556553
No 106
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.91 E-value=1.6e-23 Score=207.32 Aligned_cols=158 Identities=18% Similarity=0.233 Sum_probs=121.4
Q ss_pred eEEEEeEEEEECccc-ccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcC--CCCCCcEEEEEcCCc------
Q 005344 189 KMQVIGLTCRVGRAV-AGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARML--ADDHMKRVVIVDTSN------ 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v-~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlL--sp~~GkrViiVd~~~------ 256 (701)
.+++++|+++|+... .....+++++ +.+|++++|+||||||||||+++|+|++ .|..|. +.+++..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~--i~~~g~~~~~~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGE--VLINGRPLDKRSF 80 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceE--EEECCEeCchHhh
Confidence 478999999997310 0024688888 8999999999999999999999999999 999887 5555432
Q ss_pred --ccccCCCC----CCCCCchh----hhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hhc
Q 005344 257 --EIGGDGDV----PHSGIGRA----RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQR 319 (701)
Q Consensus 257 --EIa~~~~i----p~~~ig~~----rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~ 319 (701)
.++..... +...+... ..+.-.|+|++||++||++++.+|++||+|||+++||+.++..+ .+.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~ 160 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT 160 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 11111111 11111111 11124788999999999999999999999999999999998554 345
Q ss_pred CCEEEEEEcChh-HHHHhcCcEEEEeCCeE
Q 005344 320 GVQLVGTAHGMT-IDNIVKNPSLQILVGGI 348 (701)
Q Consensus 320 GvtVIiTTHd~~-l~~~l~drvlvl~~G~I 348 (701)
|.|+|+++|+.. .+..+||+++++.+|++
T Consensus 161 ~~tiii~sh~~~~~~~~~~d~v~~l~~G~i 190 (194)
T cd03213 161 GRTIICSIHQPSSEIFELFDKLLLLSQGRV 190 (194)
T ss_pred CCEEEEEecCchHHHHHhcCEEEEEeCCEE
Confidence 899999999996 68889999999999997
No 107
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.8e-23 Score=212.65 Aligned_cols=159 Identities=23% Similarity=0.334 Sum_probs=119.4
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
+++++|+++|+. ...+++++ +.+|++++|+|||||||||||++|+|++.|+.|+ +.+++.+
T Consensus 1 l~~~~l~~~~~~----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~~ 74 (242)
T cd03295 1 IEFENVTKRYGG----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGE--IFIDGEDIREQDPVELR 74 (242)
T ss_pred CEEEEEEEEeCC----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce--EEECCeEcCcCChHHhh
Confidence 368899999973 13578888 8999999999999999999999999999998886 3443321
Q ss_pred -ccccCC----CCCC-------------------------------CCCch----hhhccCCChhHHHHHHHHHHHccCC
Q 005344 257 -EIGGDG----DVPH-------------------------------SGIGR----ARRMQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 257 -EIa~~~----~ip~-------------------------------~~ig~----~rr~~v~s~G~qQRV~IArAL~~~P 296 (701)
.+++.. .++. .++.. .+...-.|+||+||++||++++.+|
T Consensus 75 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p 154 (242)
T cd03295 75 RKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADP 154 (242)
T ss_pred cceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 011000 0000 00100 0001124679999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 297 ETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++||+||||++||+.++..+ ++ .|.+||++||+.+.+..+||+++++.+|++ +..++.
T Consensus 155 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~ 220 (242)
T cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEI--VQVGTP 220 (242)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEecCH
Confidence 99999999999999988544 33 489999999999999999999999999998 434443
No 108
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.4e-23 Score=208.90 Aligned_cols=151 Identities=21% Similarity=0.272 Sum_probs=115.4
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
+++++++++|+. ..+++++ +.+| +++|+||||||||||+++|+|++.|+.|+ +.+++.+
T Consensus 1 i~~~~~~~~~~~-----~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~--i~~~g~~~~~~~~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGK-----KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGT--IRIDGQDVLKQPQKLRR 72 (211)
T ss_pred CEEEEEEEEECC-----EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccE--EEECCCccccchHHHHh
Confidence 468899999973 3588888 8889 99999999999999999999999998886 4444321
Q ss_pred ccccCCC----CCCC-------------------------------CCchh--hhccCCChhHHHHHHHHHHHccCCCEE
Q 005344 257 EIGGDGD----VPHS-------------------------------GIGRA--RRMQVPNVNMQHSVMIEAVENHMPETI 299 (701)
Q Consensus 257 EIa~~~~----ip~~-------------------------------~ig~~--rr~~v~s~G~qQRV~IArAL~~~PdVI 299 (701)
.+++... ++.. ++... ....-.|+||+||++||++++.+|++|
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 152 (211)
T cd03264 73 RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSIL 152 (211)
T ss_pred heEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 0111000 0000 00000 011124779999999999999999999
Q ss_pred EEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 300 IIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 300 ILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
|+||||++||+.++..+ ...+.|+|++||+.+.+..++|+++++.+|++
T Consensus 153 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 153 IVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999998554 12368999999999999999999999999987
No 109
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.7e-23 Score=223.87 Aligned_cols=165 Identities=16% Similarity=0.168 Sum_probs=123.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC----CCCCc--------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA----DDHMK-------------- 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs----p~~Gk-------------- 247 (701)
+++++||++.|... .+...+++++ |.+|++++|+|+||||||||+++|+|++. ++.|.
T Consensus 3 ~L~v~~l~~~y~~~-~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTS-DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCC-CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 68899999999521 1234689998 99999999999999999999999999996 35553
Q ss_pred --------EEEEEcCCcccccC-------------CC--C-----CC--------------CCCchh-----hhccCCCh
Q 005344 248 --------RVVIVDTSNEIGGD-------------GD--V-----PH--------------SGIGRA-----RRMQVPNV 280 (701)
Q Consensus 248 --------rViiVd~~~EIa~~-------------~~--i-----p~--------------~~ig~~-----rr~~v~s~ 280 (701)
.|.++.|....... .. . .. .++... ....-.|+
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 24444443211000 00 0 00 001000 00112478
Q ss_pred hHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEe
Q 005344 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVT 352 (701)
Q Consensus 281 G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~ 352 (701)
||+||++||+||+.+|++||+||||++||+.++..+ .+ .|.|+|++|||+.++..+||++++|..|+| ++
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~i--ve 239 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQT--VE 239 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE--EE
Confidence 999999999999999999999999999999998554 33 499999999999999999999999999999 66
Q ss_pred cCcH
Q 005344 353 LGDE 356 (701)
Q Consensus 353 lgd~ 356 (701)
.|+.
T Consensus 240 ~g~~ 243 (330)
T PRK15093 240 TAPS 243 (330)
T ss_pred ECCH
Confidence 6665
No 110
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.91 E-value=9.4e-24 Score=210.40 Aligned_cols=151 Identities=21% Similarity=0.308 Sum_probs=114.4
Q ss_pred EEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------------EEEEEcCC
Q 005344 192 VIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------------RVVIVDTS 255 (701)
Q Consensus 192 I~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------------rViiVd~~ 255 (701)
++||+++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|. ++.++.+.
T Consensus 2 ~~~l~~~~~~-----~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 76 (213)
T cd03235 2 VEDLTVSYGG-----HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQR 76 (213)
T ss_pred cccceeEECC-----EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccc
Confidence 6789999973 3578888 8999999999999999999999999999998885 13344433
Q ss_pred ccccc---C--------CCCCCC---------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEEE
Q 005344 256 NEIGG---D--------GDVPHS---------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIII 301 (701)
Q Consensus 256 ~EIa~---~--------~~ip~~---------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIIL 301 (701)
..... . ...... ++.. .+...-.|+||+||++||++++.+|++||+
T Consensus 77 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llll 156 (213)
T cd03235 77 RSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLL 156 (213)
T ss_pred cccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 21100 0 000000 0000 001123578999999999999999999999
Q ss_pred cCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCe
Q 005344 302 DEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 302 DEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~ 347 (701)
||||++||+.++..+ ++.|.++|++||+.+++..+||+++++.+|.
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~ 209 (213)
T cd03235 157 DEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTV 209 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcE
Confidence 999999999998544 3468999999999999999999999998753
No 111
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.2e-23 Score=217.99 Aligned_cols=161 Identities=17% Similarity=0.297 Sum_probs=122.9
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc-------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE------- 257 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E------- 257 (701)
.+++++|++++|+. ...+++++ +.+|++++|+|+||||||||+++|+|+++|+.|+ +++++..-
T Consensus 4 ~~l~~~~l~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~--i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 4 YILKVEELNYNYSD----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR--ILFDGKPIDYSRKGL 77 (283)
T ss_pred ceEEEEeEEEEeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccE--EEECCEECCCCcchH
Confidence 46899999999962 23588888 8999999999999999999999999999999885 34443210
Q ss_pred ------cccCCCCC-----C-------------CCCch--------------------hhhccCCChhHHHHHHHHHHHc
Q 005344 258 ------IGGDGDVP-----H-------------SGIGR--------------------ARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 258 ------Ia~~~~ip-----~-------------~~ig~--------------------~rr~~v~s~G~qQRV~IArAL~ 293 (701)
+++....+ . .+... .+...-.|+||+||++||++|+
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~ 157 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV 157 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 11100000 0 00000 0111224779999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 294 HMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
.+|++||+|||+++||+.++..+ .+ .|.|||++||+++.+..+||+++++.+|++ +..|+.
T Consensus 158 ~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i--~~~g~~ 226 (283)
T PRK13636 158 MEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRV--ILQGNP 226 (283)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 99999999999999999998543 33 389999999999999999999999999998 445554
No 112
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.91 E-value=2.4e-23 Score=213.87 Aligned_cols=160 Identities=23% Similarity=0.266 Sum_probs=122.3
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
.++++++|+++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +.+++.+
T Consensus 5 ~~l~~~~l~~~~~~-----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 5 PLLSVRGLTKLYGP-----RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGE--VHYRMRDGQLRDLYA 77 (258)
T ss_pred ceEEEeeeEEEcCC-----ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE--EEECCcccccccccc
Confidence 46899999999973 3588888 9999999999999999999999999999998886 4444321
Q ss_pred ------------ccccCCCCC------C--------------------------------CCCch---hhhccCCChhHH
Q 005344 257 ------------EIGGDGDVP------H--------------------------------SGIGR---ARRMQVPNVNMQ 283 (701)
Q Consensus 257 ------------EIa~~~~ip------~--------------------------------~~ig~---~rr~~v~s~G~q 283 (701)
.+++...-+ . .++.. .+...-.|+|++
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQ 157 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHH
Confidence 011100000 0 00000 001112467999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCc
Q 005344 284 HSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGD 355 (701)
Q Consensus 284 QRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd 355 (701)
||++||++++.+|++||+||||++||+.+...+ .+ .|.++|++||+.+.+..+||+++.+.+|++ +..++
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i--~~~~~ 235 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRV--VESGL 235 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE--EEeCC
Confidence 999999999999999999999999999998544 23 389999999999999999999999999998 44454
Q ss_pred H
Q 005344 356 E 356 (701)
Q Consensus 356 ~ 356 (701)
.
T Consensus 236 ~ 236 (258)
T PRK11701 236 T 236 (258)
T ss_pred H
Confidence 4
No 113
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.91 E-value=2.5e-23 Score=208.97 Aligned_cols=155 Identities=17% Similarity=0.285 Sum_probs=117.7
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc--------------EEEEE
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK--------------RVVIV 252 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk--------------rViiV 252 (701)
+++++++++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|. .++++
T Consensus 1 l~l~~v~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFGK-----QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSL 75 (223)
T ss_pred CEEEeEEEEECC-----EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEE
Confidence 468899999973 3578888 8999999999999999999999999999999885 12223
Q ss_pred cCCccccc-CC------------CCCC---------CCCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcc
Q 005344 253 DTSNEIGG-DG------------DVPH---------SGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTEL 308 (701)
Q Consensus 253 d~~~EIa~-~~------------~ip~---------~~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgL 308 (701)
.+...+.. .. .... .++.. .....-.|+|++||++||++++.+|++||+|||+++|
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~L 155 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGL 155 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCC
Confidence 22211100 00 0000 00000 0011225779999999999999999999999999999
Q ss_pred cHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 309 EALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 309 D~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
|+.++..+ ++.|.++|++||+.+++..+||+++.+.+|++.
T Consensus 156 D~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 156 DPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 99998554 446899999999999999999999999999983
No 114
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=2.6e-23 Score=214.29 Aligned_cols=159 Identities=19% Similarity=0.315 Sum_probs=120.4
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
++++++|++.|+. ..+|+++ +.+|++++|+||||||||||+++|+|++.|+.|. +.+++.+
T Consensus 2 ~l~~~~l~~~~~~-----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~--i~~~g~~~~~~~~~~~ 74 (258)
T PRK13548 2 MLEARNLSVRLGG-----RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGE--VRLNGRPLADWSPAEL 74 (258)
T ss_pred eEEEEeEEEEeCC-----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE--EEECCEEcccCCHHHh
Confidence 5789999999973 3688888 8999999999999999999999999999998885 3333321
Q ss_pred --ccccCCC---C-CCC-------------------------------CCch--hhhccCCChhHHHHHHHHHHHc----
Q 005344 257 --EIGGDGD---V-PHS-------------------------------GIGR--ARRMQVPNVNMQHSVMIEAVEN---- 293 (701)
Q Consensus 257 --EIa~~~~---i-p~~-------------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~---- 293 (701)
.+++... + +.. ++.. .....-.|+|++||++||++++
T Consensus 75 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~ 154 (258)
T PRK13548 75 ARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWE 154 (258)
T ss_pred hhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 0100000 0 000 0000 0011124779999999999999
Q ss_pred --cCCCEEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 294 --HMPETIIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 294 --~~PdVIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
.+|++||+||||++||+.++..+ . +.|.+||++||+.+.+..+||+++++..|++ +..++.
T Consensus 155 ~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~ 225 (258)
T PRK13548 155 PDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRL--VADGTP 225 (258)
T ss_pred cCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEE--EeeCCH
Confidence 59999999999999999997443 3 5689999999999999999999999999998 334444
No 115
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.91 E-value=1.5e-23 Score=210.81 Aligned_cols=154 Identities=21% Similarity=0.304 Sum_probs=117.2
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcC-----CCCCCc--------------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARML-----ADDHMK-------------- 247 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlL-----sp~~Gk-------------- 247 (701)
++++||+++|+. ..+|+++ +.+|++++|+||||||||||+++|+|++ .|+.|+
T Consensus 1 i~~~~l~~~~~~-----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 75 (227)
T cd03260 1 IELRDLNVYYGD-----KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75 (227)
T ss_pred CEEEEEEEEcCC-----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchH
Confidence 468999999973 3588888 8999999999999999999999999999 888775
Q ss_pred ------EEEEEcCCcccccC------------CCCCC--------------CCCchh--hh--ccCCChhHHHHHHHHHH
Q 005344 248 ------RVVIVDTSNEIGGD------------GDVPH--------------SGIGRA--RR--MQVPNVNMQHSVMIEAV 291 (701)
Q Consensus 248 ------rViiVd~~~EIa~~------------~~ip~--------------~~ig~~--rr--~~v~s~G~qQRV~IArA 291 (701)
+++++.+...+... ..... .++... .. ..-.|+||+||++||++
T Consensus 76 ~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 76 VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHH
Confidence 12333332111000 00000 011100 11 13467899999999999
Q ss_pred HccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 292 ENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 292 L~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
++.+|++||+||||++||+.++..+ ++. .++|++||+.+.+..+||+++++.+|++.
T Consensus 156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLV 219 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999998554 334 89999999999999999999999999983
No 116
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.3e-23 Score=216.96 Aligned_cols=160 Identities=21% Similarity=0.293 Sum_probs=122.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
++++.||+++|+. ...+|+++ +.+|++++|+|+||||||||+++|+|++.|++|+ +.+++..
T Consensus 3 ~l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~~~~~~~~~~ 76 (277)
T PRK13652 3 LIETRDLCYSYSG----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGS--VLIRGEPITKENIREV 76 (277)
T ss_pred eEEEEEEEEEeCC----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE--EEECCEECCcCCHHHH
Confidence 5789999999962 23588888 8999999999999999999999999999999886 4443321
Q ss_pred --ccccCCCCC-----CC-------------CCch--------------------hhhccCCChhHHHHHHHHHHHccCC
Q 005344 257 --EIGGDGDVP-----HS-------------GIGR--------------------ARRMQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 257 --EIa~~~~ip-----~~-------------~ig~--------------------~rr~~v~s~G~qQRV~IArAL~~~P 296 (701)
.+++....+ .. ++.. .+...-.|+||+||++||++++.+|
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p 156 (277)
T PRK13652 77 RKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEP 156 (277)
T ss_pred HhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 011100000 00 0000 0111224779999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 297 ETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++||+||||++||+.++..+ .+ .|.|+|++||+.+++..+||+++++.+|++ +..++.
T Consensus 157 ~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i--~~~g~~ 222 (277)
T PRK13652 157 QVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRI--VAYGTV 222 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeE--EEECCH
Confidence 99999999999999988554 33 389999999999999999999999999998 445555
No 117
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.91 E-value=2.9e-23 Score=212.32 Aligned_cols=160 Identities=23% Similarity=0.284 Sum_probs=121.9
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
.++++++|+++|+. ..+++++ +.+|++++|+||||||||||+++|+|+++|+.|. +.+++..
T Consensus 2 ~~l~~~~l~~~~~~-----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 2 PLLQVSGLSKSYGG-----GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGT--ATYIMRSGAELELYQ 74 (253)
T ss_pred ceEEEeeeEEEeCC-----ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEEeccccccccccc
Confidence 36899999999973 3578888 8999999999999999999999999999998886 4444321
Q ss_pred ------------ccccCCCCC------CC----CC-------c-----h--------hhh-----------ccCCChhHH
Q 005344 257 ------------EIGGDGDVP------HS----GI-------G-----R--------ARR-----------MQVPNVNMQ 283 (701)
Q Consensus 257 ------------EIa~~~~ip------~~----~i-------g-----~--------~rr-----------~~v~s~G~q 283 (701)
.++....-+ .. .+ . . ... ..-.|+|++
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 011100000 00 00 0 0 001 112467999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCc
Q 005344 284 HSVMIEAVENHMPETIIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGD 355 (701)
Q Consensus 284 QRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd 355 (701)
||++||++++.+|++||+|||+++||+.++..+ . +.|.++|++||+.+.+..+||+++.+.+|++ +..++
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i--~~~~~ 232 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV--VESGL 232 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE--EEECC
Confidence 999999999999999999999999999998544 2 3489999999999999999999999999998 44444
Q ss_pred H
Q 005344 356 E 356 (701)
Q Consensus 356 ~ 356 (701)
.
T Consensus 233 ~ 233 (253)
T TIGR02323 233 T 233 (253)
T ss_pred H
Confidence 4
No 118
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.91 E-value=1.8e-23 Score=209.16 Aligned_cols=155 Identities=15% Similarity=0.211 Sum_probs=115.4
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
+++++|+++|+.. .+...+++++ +.+|++++|+|||||||||||++|+|++.|+.|+ +.+++.+
T Consensus 2 l~~~~v~~~~~~~-~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~--i~~~g~~~~~~~~~~~~ 78 (221)
T TIGR02211 2 LKCENLGKRYQEG-KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE--VLFNGQSLSKLSSNERA 78 (221)
T ss_pred EEEEeeeEEccCC-CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEECCEEhhhcCHhHHH
Confidence 6789999999631 1123588887 8999999999999999999999999999998885 3343311
Q ss_pred -----ccccCC----CCCCC-------------CCch----------h----------hhccCCChhHHHHHHHHHHHcc
Q 005344 257 -----EIGGDG----DVPHS-------------GIGR----------A----------RRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 -----EIa~~~----~ip~~-------------~ig~----------~----------rr~~v~s~G~qQRV~IArAL~~ 294 (701)
.+++.. .++.. .... . +...-.|+||+||++||++++.
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 158 (221)
T TIGR02211 79 KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVN 158 (221)
T ss_pred HHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC
Confidence 011100 00000 0000 0 0112257799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 295 MPETIIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+|++||+||||++||+.++..+ + +.|.++|++||+.+.+.. +|+++++..|++
T Consensus 159 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i 219 (221)
T TIGR02211 159 QPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQL 219 (221)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEe
Confidence 9999999999999999998554 2 348999999999998865 799999999986
No 119
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.3e-23 Score=210.80 Aligned_cols=159 Identities=17% Similarity=0.242 Sum_probs=117.9
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN------- 256 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~------- 256 (701)
+.++++++|+++|+... ....+|+++ +.+|++++|+||||||||||+++|+|+++|+.|+ +.+++.+
T Consensus 3 ~~~l~~~~l~~~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~--i~~~g~~i~~~~~~ 79 (233)
T PRK11629 3 KILLQCDNLCKRYQEGS-VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGD--VIFNGQPMSKLSSA 79 (233)
T ss_pred CceEEEEeEEEEcCCCC-cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceE--EEECCEEcCcCCHH
Confidence 45789999999997310 013588888 8999999999999999999999999999998875 3443311
Q ss_pred --------ccccCC----CCCCC-------------CCch----------hhhc----------cCCChhHHHHHHHHHH
Q 005344 257 --------EIGGDG----DVPHS-------------GIGR----------ARRM----------QVPNVNMQHSVMIEAV 291 (701)
Q Consensus 257 --------EIa~~~----~ip~~-------------~ig~----------~rr~----------~v~s~G~qQRV~IArA 291 (701)
.+++.. .++.. +... ...+ .-.|+||+||++||++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 011000 00000 0000 0011 1246799999999999
Q ss_pred HccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 292 ENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 292 L~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
++.+|++||+||||++||+.+...+ ++ .|.++|++||+.+.+..+ ++++++.+|++.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~ 224 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLT 224 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEE
Confidence 9999999999999999999998544 23 589999999999998876 589999999983
No 120
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.91 E-value=2.9e-23 Score=213.90 Aligned_cols=160 Identities=17% Similarity=0.271 Sum_probs=120.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEcCCccc
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVDTSNEI 258 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd~~~EI 258 (701)
++++.+|+++|+. ..+|+++ +.+|++++|+||||||||||+++|+|++.|++|+ .++++.+....
T Consensus 4 ~l~~~~l~~~~~~-----~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~ 78 (251)
T PRK09544 4 LVSLENVSVSFGQ-----RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYL 78 (251)
T ss_pred EEEEeceEEEECC-----ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccc
Confidence 6889999999973 3588887 8999999999999999999999999999998884 24455543211
Q ss_pred ccC------C---CCCC------------CCCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHH
Q 005344 259 GGD------G---DVPH------------SGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST 315 (701)
Q Consensus 259 a~~------~---~ip~------------~~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~ 315 (701)
... . ..+. .++.. .......|+|++||++||++++++|++||+||||++||+.++..
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~ 158 (251)
T PRK09544 79 DTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158 (251)
T ss_pred ccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 000 0 0000 00000 01122357899999999999999999999999999999999855
Q ss_pred H-------Hhc-CCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 316 I-------AQR-GVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 316 l-------~e~-GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+ .+. |.++|++||+.+++..+||+++++. +++ +..++.
T Consensus 159 l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~-~~i--~~~g~~ 204 (251)
T PRK09544 159 LYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN-HHI--CCSGTP 204 (251)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC-Cce--EeeCCH
Confidence 4 333 8999999999999999999999995 566 444554
No 121
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.91 E-value=3.4e-23 Score=211.34 Aligned_cols=159 Identities=22% Similarity=0.332 Sum_probs=119.5
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC-----CCcEEEEEcCCc----
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADD-----HMKRVVIVDTSN---- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~-----~GkrViiVd~~~---- 256 (701)
+++++||+++|+. ..+++++ +.+|++++|+|+||||||||+++|+|++.|+ .|+ +.+++.+
T Consensus 1 ~l~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~--i~~~g~~~~~~ 73 (247)
T TIGR00972 1 AIEIENLNLFYGE-----KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGK--VLFDGQDIYDK 73 (247)
T ss_pred CEEEEEEEEEECC-----eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceE--EEECCEEcccc
Confidence 4689999999973 3588888 8999999999999999999999999999887 775 3333211
Q ss_pred ---------ccccC----CCCC-------------C------------------CCCc----h--hhhccCCChhHHHHH
Q 005344 257 ---------EIGGD----GDVP-------------H------------------SGIG----R--ARRMQVPNVNMQHSV 286 (701)
Q Consensus 257 ---------EIa~~----~~ip-------------~------------------~~ig----~--~rr~~v~s~G~qQRV 286 (701)
.+++. ..++ . .++. . .....-.|+||+||+
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 74 KIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRL 153 (247)
T ss_pred ccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHH
Confidence 01000 0000 0 0110 0 001122477999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||++++.+|++||+||||++||+.++..+ ...+.++|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~~~~ 227 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL--VEYGPT 227 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 999999999999999999999999998554 12358999999999999999999999999998 444444
No 122
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.9e-23 Score=216.01 Aligned_cols=161 Identities=20% Similarity=0.328 Sum_probs=121.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
++++++|+++|+. ...+++++ |.+|++++|+||||||||||+++|+|+++++.|+ +.+++..
T Consensus 1 ~l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~--i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 1 ILETRDLKYSYPD----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGE--VLIKGEPIKYDKKSLL 74 (275)
T ss_pred CEEEEEEEEEeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccE--EEECCEECccccchHH
Confidence 3689999999962 23578888 8999999999999999999999999999998885 3343311
Q ss_pred ----ccccCCCCC-----CC-------------------------------CCchh--hhccCCChhHHHHHHHHHHHcc
Q 005344 257 ----EIGGDGDVP-----HS-------------------------------GIGRA--RRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 ----EIa~~~~ip-----~~-------------------------------~ig~~--rr~~v~s~G~qQRV~IArAL~~ 294 (701)
.+++...-+ .. ++... +...-.|+||+||++||++++.
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~ 154 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAM 154 (275)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 011100000 00 00000 0111247799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
+|++||+||||++||+.++..+ .+.|.|||++||+.+.+..+||+++++.+|++ +..++.+
T Consensus 155 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i--~~~g~~~ 222 (275)
T PRK13639 155 KPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKI--IKEGTPK 222 (275)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEeCCHH
Confidence 9999999999999999998544 34599999999999999999999999999998 4455543
No 123
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.7e-23 Score=216.93 Aligned_cols=161 Identities=20% Similarity=0.258 Sum_probs=121.0
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------- 257 (701)
++++.+|+++|++. +...+|+++ |.+|++++|+|+||||||||+++|+|++.|+.|. +++++..-
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~i~~~~~~~~ 79 (279)
T PRK13650 4 IIEVKNLTFKYKED--QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ--IIIDGDLLTEENVWDI 79 (279)
T ss_pred eEEEEeEEEEcCCC--CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE--EEECCEECCcCcHHHH
Confidence 68899999999732 123488888 8999999999999999999999999999999885 44443210
Q ss_pred ---cccCCC-----CCC-------------CCCch------------------h--hhccCCChhHHHHHHHHHHHccCC
Q 005344 258 ---IGGDGD-----VPH-------------SGIGR------------------A--RRMQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 258 ---Ia~~~~-----ip~-------------~~ig~------------------~--rr~~v~s~G~qQRV~IArAL~~~P 296 (701)
+++... ++. .+... . +...-.|+|++||++||++++++|
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p 159 (279)
T PRK13650 80 RHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRP 159 (279)
T ss_pred HhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 111000 000 00000 0 011124779999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 297 ETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++||+||||++||+.++..+ ++ .|.|||++||+.+.+. +||+++++.+|++ +..++.
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i--~~~g~~ 224 (279)
T PRK13650 160 KIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQV--ESTSTP 224 (279)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEE--EEECCH
Confidence 99999999999999988544 33 4999999999999984 7999999999998 445554
No 124
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3e-23 Score=216.71 Aligned_cols=163 Identities=20% Similarity=0.299 Sum_probs=122.6
Q ss_pred ccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc------
Q 005344 186 RNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN------ 256 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~------ 256 (701)
.+.++++++|+++|+.. ...+|+++ |.+|++++|+||||||||||+++|+|++.|+.|+ +++++..
T Consensus 2 ~~~~l~~~~l~~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~--i~~~g~~i~~~~~ 76 (279)
T PRK13635 2 KEEIIRVEHISFRYPDA---ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT--ITVGGMVLSEETV 76 (279)
T ss_pred CCceEEEEEEEEEeCCC---CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE--EEECCEECCcCcH
Confidence 34578999999999731 23588888 8999999999999999999999999999999886 4444421
Q ss_pred -----ccccCCC-----CCCC-------------CCch--------------------hhhccCCChhHHHHHHHHHHHc
Q 005344 257 -----EIGGDGD-----VPHS-------------GIGR--------------------ARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 257 -----EIa~~~~-----ip~~-------------~ig~--------------------~rr~~v~s~G~qQRV~IArAL~ 293 (701)
.+++... +... +... .+...-.|+||+||++||++++
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 0110000 0000 0000 0011124779999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 294 HMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
.+|++||+||||++||+.++..+ .+ .|.|||++||+.+.+. .||+++++.+|++ +..++.
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i--~~~g~~ 224 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEI--LEEGTP 224 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEE--EEECCH
Confidence 99999999999999999998554 33 3899999999999987 5999999999998 444554
No 125
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.1e-23 Score=218.34 Aligned_cols=185 Identities=15% Similarity=0.207 Sum_probs=143.3
Q ss_pred ceEEEEeEEEEECccc---cc-ccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccccc
Q 005344 188 RKMQVIGLTCRVGRAV---AG-SAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGG 260 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v---~G-~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~ 260 (701)
..++++||++.|.... .. ...+++++ |.+|++++|+|.+|||||||-|+|+|++.|++|. +++++.+....
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~--i~f~g~~i~~~ 80 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGE--ILFEGKDITKL 80 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCce--EEEcCcchhhc
Confidence 4688999999996321 11 24678888 9999999999999999999999999999999998 77776542110
Q ss_pred CC---------CCCCCCCch--hhhc-cCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcC
Q 005344 261 DG---------DVPHSGIGR--ARRM-QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI--------AQRG 320 (701)
Q Consensus 261 ~~---------~ip~~~ig~--~rr~-~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~G 320 (701)
.. .+...++.. ..+. .-.++|++||+.||||++.+|++||+|||+++||+..+..+ .+.|
T Consensus 81 ~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~ 160 (268)
T COG4608 81 SKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG 160 (268)
T ss_pred chhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC
Confidence 00 000011111 1111 23588999999999999999999999999999999877544 4569
Q ss_pred CEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHHHhhhhHHHHhhccCCCcceeeeeeee
Q 005344 321 VQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMIS 384 (701)
Q Consensus 321 vtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a~~r~~qe~Iler~~~p~f~~~vev~~ 384 (701)
.+.++++||+..+..+||++.+|..|+| |+.++. +.++..+.+|+.+.++..++
T Consensus 161 lt~lFIsHDL~vv~~isdri~VMy~G~i--VE~g~~--------~~~~~~p~HpYTk~Ll~a~p 214 (268)
T COG4608 161 LTYLFISHDLSVVRYISDRIAVMYLGKI--VEIGPT--------EEVFSNPLHPYTKALLSAVP 214 (268)
T ss_pred CeEEEEEEEHHhhhhhcccEEEEecCce--eEecCH--------HHHhhCCCCHHHHHHHHhCC
Confidence 9999999999999999999999999999 777776 44666888888877766653
No 126
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.8e-23 Score=216.25 Aligned_cols=159 Identities=18% Similarity=0.251 Sum_probs=120.0
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------- 257 (701)
+++++||+++|+. ...+|+++ |.+|++++|+|||||||||||++|+|++.|+.|+ +++++..-
T Consensus 1 ml~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 1 MIRLENVSYSYPD----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGK--VLVSGIDTGDFSKLQG 74 (274)
T ss_pred CEEEEEEEEEcCC----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce--EEECCEECCccccHHH
Confidence 4789999999962 23588888 9999999999999999999999999999998886 44443210
Q ss_pred ----cccCCC-----CCC-------------CCCc------------------hh--hhccCCChhHHHHHHHHHHHccC
Q 005344 258 ----IGGDGD-----VPH-------------SGIG------------------RA--RRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 258 ----Ia~~~~-----ip~-------------~~ig------------------~~--rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
+++... +.. .+.. .. ....-.|+||+||++||++++.+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTME 154 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 110000 000 0000 00 01112477999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 296 PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||+||||++||+.++..+ ++.|.|+|++||+.+.+. .||+++++..|++ +..++.
T Consensus 155 p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i--~~~g~~ 219 (274)
T PRK13644 155 PECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKI--VLEGEP 219 (274)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEE--EEECCH
Confidence 999999999999999987443 456999999999999985 5999999999998 445554
No 127
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2e-23 Score=216.63 Aligned_cols=157 Identities=21% Similarity=0.302 Sum_probs=117.3
Q ss_pred EEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-----------
Q 005344 191 QVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN----------- 256 (701)
Q Consensus 191 eI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~----------- 256 (701)
.+.++++.|+. ..+|+++ +.+|++++|+||||||||||+++|+|++.|+.|. +++++..
T Consensus 26 ~~~~~~~~~~~-----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~--i~i~g~~~~~~~~~~~~~ 98 (269)
T cd03294 26 SKEEILKKTGQ-----TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK--VLIDGQDIAAMSRKELRE 98 (269)
T ss_pred hhhhhhhhcCC-----ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE--EEECCEEccccChhhhhh
Confidence 45577777763 4678888 8999999999999999999999999999998886 4443321
Q ss_pred ----ccccC----CCCCCC-------------------------------CCch--hhhccCCChhHHHHHHHHHHHccC
Q 005344 257 ----EIGGD----GDVPHS-------------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 257 ----EIa~~----~~ip~~-------------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
.+++. ..++.. ++.. .....-.|+||+||++||++++++
T Consensus 99 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 99 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVD 178 (269)
T ss_pred hhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 01110 000000 0000 001112478999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 296 PETIIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||+||||++||+.++..+ . +.|.++|++||+.+.+..+||+++++..|++ +..++.
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i--~~~g~~ 245 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRL--VQVGTP 245 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE--EEeCCH
Confidence 999999999999999998544 2 3489999999999999999999999999998 334443
No 128
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.90 E-value=4.1e-23 Score=213.89 Aligned_cols=162 Identities=16% Similarity=0.235 Sum_probs=120.1
Q ss_pred ceEEEEeEEEEECccc----ccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------------
Q 005344 188 RKMQVIGLTCRVGRAV----AGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v----~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------- 247 (701)
.+++++||+++|+... .+...+|+++ +.+|++++|+|||||||||||++|+|++.|++|.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 3689999999996311 0123588888 8999999999999999999999999999998885
Q ss_pred -----EEEEEcCCcccccCC------CC----C-CCCCch----------hhh-----------ccCCChhHHHHHHHHH
Q 005344 248 -----RVVIVDTSNEIGGDG------DV----P-HSGIGR----------ARR-----------MQVPNVNMQHSVMIEA 290 (701)
Q Consensus 248 -----rViiVd~~~EIa~~~------~i----p-~~~ig~----------~rr-----------~~v~s~G~qQRV~IAr 290 (701)
+++++.+........ .+ . ...+.. ... ....|+||+||++||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 122332221100000 00 0 000000 001 1224679999999999
Q ss_pred HHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 291 VENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 291 AL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+++++|++||+|||+++||+.++..+ .+ .|.+||++||+.+.+..+||+++++.+|++.
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~ 229 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999998544 23 4899999999999999999999999999983
No 129
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.8e-23 Score=210.67 Aligned_cols=162 Identities=22% Similarity=0.290 Sum_probs=119.1
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC-----CCCCc------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA-----DDHMK------------ 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs-----p~~Gk------------ 247 (701)
+++++++|+++|+. ..+|+++ +.+|++++|+|||||||||||++|+|++. |+.|.
T Consensus 5 ~~l~~~~l~~~~~~-----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 5 PKMEARGLSFFYGD-----FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred cEEEEeeeEEEECC-----eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 46889999999973 3588888 89999999999999999999999999864 45664
Q ss_pred --------EEEEEcCCcccccC------------CCC-CC-------------CCCch------hhhccCCChhHHHHHH
Q 005344 248 --------RVVIVDTSNEIGGD------------GDV-PH-------------SGIGR------ARRMQVPNVNMQHSVM 287 (701)
Q Consensus 248 --------rViiVd~~~EIa~~------------~~i-p~-------------~~ig~------~rr~~v~s~G~qQRV~ 287 (701)
.+.++.+...+-.. ... .. .++.. .+...-.|+||+||++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 12233222110000 000 00 00000 0011225779999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||++++.+|++||+||||++||+.++..+ ...|.+||++||+.+.+..+||+++.+..|++ +..+..
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i--~~~g~~ 232 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKL--IEVGPT 232 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 99999999999999999999999998554 13478999999999999999999999999998 334443
No 130
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=4.5e-23 Score=213.14 Aligned_cols=157 Identities=17% Similarity=0.277 Sum_probs=119.4
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
.++++++|+++|+. ..+|+++ +.+|++++|+||||||||||+++|+|+++|+.|+
T Consensus 10 ~~l~i~~l~~~~~~-----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 84 (265)
T PRK10575 10 TTFALRNVSFRVPG-----RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA 84 (265)
T ss_pred ceEEEeeEEEEECC-----EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHh
Confidence 46899999999973 3688888 8999999999999999999999999999998875
Q ss_pred -EEEEEcCCccc-ccC--------CCCCCCC----Cch---------hhh----------ccCCChhHHHHHHHHHHHcc
Q 005344 248 -RVVIVDTSNEI-GGD--------GDVPHSG----IGR---------ARR----------MQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 -rViiVd~~~EI-a~~--------~~ip~~~----ig~---------~rr----------~~v~s~G~qQRV~IArAL~~ 294 (701)
.++++.+.... ... ....... ... ... ..-.|+|++||++||++++.
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 164 (265)
T PRK10575 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQ 164 (265)
T ss_pred hheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 13333332110 000 0000000 000 011 11247799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+|++||+||||++||+.++..+ ++ .|.++|++||+.+++..+||+++++.+|++.
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~ 227 (265)
T PRK10575 165 DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI 227 (265)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999997543 33 4899999999999999999999999999983
No 131
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.90 E-value=3.8e-23 Score=205.36 Aligned_cols=153 Identities=18% Similarity=0.204 Sum_probs=119.3
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhc--CCCCCCcEEEEEcCCcccc-----
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARM--LADDHMKRVVIVDTSNEIG----- 259 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGl--Lsp~~GkrViiVd~~~EIa----- 259 (701)
+++++++++|+. ..+++++ +.+|++++|+|+||||||||+++|+|+ +.|+.|+ +.+++.+--.
T Consensus 1 l~~~~l~~~~~~-----~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~--i~~~g~~~~~~~~~~ 73 (200)
T cd03217 1 LEIKDLHVSVGG-----KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGE--ILFKGEDITDLPPEE 73 (200)
T ss_pred CeEEEEEEEeCC-----EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccE--EEECCEECCcCCHHH
Confidence 468899999973 3588887 899999999999999999999999999 4788887 5666532100
Q ss_pred ----cCCCCCCC-----CCc--h-hhhc-cCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hhc
Q 005344 260 ----GDGDVPHS-----GIG--R-ARRM-QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQR 319 (701)
Q Consensus 260 ----~~~~ip~~-----~ig--~-~rr~-~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~ 319 (701)
....+++. ... . .+.. .-.++||+||++||++++.+|++||+||||++||+.++..+ ++.
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~ 153 (200)
T cd03217 74 RARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE 153 (200)
T ss_pred HhhCcEEEeecChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC
Confidence 01111111 000 0 0122 34688999999999999999999999999999999988544 345
Q ss_pred CCEEEEEEcChhHHHH-hcCcEEEEeCCeEE
Q 005344 320 GVQLVGTAHGMTIDNI-VKNPSLQILVGGIE 349 (701)
Q Consensus 320 GvtVIiTTHd~~l~~~-l~drvlvl~~G~I~ 349 (701)
|.|+|++||+.+.+.. ++|+++.+..|++.
T Consensus 154 ~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 184 (200)
T cd03217 154 GKSVLIITHYQRLLDYIKPDRVHVLYDGRIV 184 (200)
T ss_pred CCEEEEEecCHHHHHHhhCCEEEEEECCEEE
Confidence 8999999999999988 79999999999983
No 132
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.90 E-value=4.1e-23 Score=211.32 Aligned_cols=158 Identities=23% Similarity=0.342 Sum_probs=119.7
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
++++||+++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|++|. +.+++..
T Consensus 1 i~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~i~~~~~~~~~ 73 (252)
T TIGR03005 1 VRFSDVTKRFGI-----LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQ--IQVEGEQLYHMPGRNGP 73 (252)
T ss_pred CEEEEEEEEeCC-----eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCEEcccccccccc
Confidence 468999999973 3688888 8999999999999999999999999999998886 3343311
Q ss_pred --------------ccccC----CCCCCC--------------CCch----------hhh----------ccCCChhHHH
Q 005344 257 --------------EIGGD----GDVPHS--------------GIGR----------ARR----------MQVPNVNMQH 284 (701)
Q Consensus 257 --------------EIa~~----~~ip~~--------------~ig~----------~rr----------~~v~s~G~qQ 284 (701)
.+++. ..++.. +... ... ..-.++|++|
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 153 (252)
T TIGR03005 74 LVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQ 153 (252)
T ss_pred ccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHH
Confidence 01100 000100 0000 001 1124679999
Q ss_pred HHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 285 SVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 285 RV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||++++.+|++||+|||+++||+.++..+ .+ .|.++|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 231 (252)
T TIGR03005 154 RVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI--VEQGKP 231 (252)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE--EEeCCH
Confidence 99999999999999999999999999988544 33 489999999999999999999999999998 444544
No 133
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=4.5e-23 Score=215.88 Aligned_cols=164 Identities=15% Similarity=0.210 Sum_probs=121.3
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
.++++||+++|+........+|+++ +.+|++++|+||||||||||+++|+|++.|++|. +++++..
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQ--TIVGDYAIPANLKKIK 83 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce--EEECCEEccccccccc
Confidence 4789999999973210012488888 8999999999999999999999999999998886 3333210
Q ss_pred -------ccccCCCCC-----C-------------CCCch----------h-----------hhccCCChhHHHHHHHHH
Q 005344 257 -------EIGGDGDVP-----H-------------SGIGR----------A-----------RRMQVPNVNMQHSVMIEA 290 (701)
Q Consensus 257 -------EIa~~~~ip-----~-------------~~ig~----------~-----------rr~~v~s~G~qQRV~IAr 290 (701)
.+++....+ . .+... . +...-.|+||+||++||+
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 011100000 0 00000 0 011124679999999999
Q ss_pred HHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 291 VENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 291 AL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+++.+|++||+||||++||+.++..+ .+ .|.+||++||+.+.+..+||+++++..|++ +..++.
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 235 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKV--ISIGSP 235 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 99999999999999999999998554 23 489999999999999999999999999998 444544
No 134
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.90 E-value=2e-23 Score=227.89 Aligned_cols=148 Identities=18% Similarity=0.238 Sum_probs=114.0
Q ss_pred cccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-------------------ccccC-
Q 005344 205 GSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------------------EIGGD- 261 (701)
Q Consensus 205 G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------------------EIa~~- 261 (701)
|...+++++ +.+|++++|+|+||||||||+|+|+|++.|+.|+ +++++.. .+++.
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~--I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS--VLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE--EEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 345567777 8899999999999999999999999999999987 6666420 11111
Q ss_pred ---CCCCCC-------------CCchh----------hhc----------cCCChhHHHHHHHHHHHccCCCEEEEcCCC
Q 005344 262 ---GDVPHS-------------GIGRA----------RRM----------QVPNVNMQHSVMIEAVENHMPETIIIDEIG 305 (701)
Q Consensus 262 ---~~ip~~-------------~ig~~----------rr~----------~v~s~G~qQRV~IArAL~~~PdVIILDEPt 305 (701)
..+++. ++... ..+ .-.|+|||||++||++|+++|++||+|||+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt 192 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF 192 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 111211 00000 011 124779999999999999999999999999
Q ss_pred CcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 306 TELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 306 sgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++||+..+..+ .+ .|.|+|++||+.+++..+||++++|.+|++ +..++.
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~i--v~~g~~ 249 (382)
T TIGR03415 193 SALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRI--IQHGTP 249 (382)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEecCH
Confidence 99999998654 23 489999999999999999999999999999 555655
No 135
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.90 E-value=5.8e-23 Score=208.47 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=120.8
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------- 257 (701)
++++.+++++|+. ..+++++ +.+|++++|+|||||||||||++|+|++.|++|. +.+++..-
T Consensus 2 ~i~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~--i~~~g~~~~~~~~~~~ 74 (242)
T TIGR03411 2 ILYLEGLSVSFDG-----FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGS--VLFGGTDLTGLPEHQI 74 (242)
T ss_pred eEEEEeeEEEcCC-----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCe--EEECCeecCCCCHHHH
Confidence 5789999999973 3588888 8999999999999999999999999999999885 44443210
Q ss_pred ----cccC----CCCCCCC------------------C-------ch------hhh----------ccCCChhHHHHHHH
Q 005344 258 ----IGGD----GDVPHSG------------------I-------GR------ARR----------MQVPNVNMQHSVMI 288 (701)
Q Consensus 258 ----Ia~~----~~ip~~~------------------i-------g~------~rr----------~~v~s~G~qQRV~I 288 (701)
+++. ..++... + .. ... ....|+|++||++|
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~l 154 (242)
T TIGR03411 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEI 154 (242)
T ss_pred HhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 1000 0000000 0 00 001 11246799999999
Q ss_pred HHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 289 EAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 289 ArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++++++|++||+||||++||+.++..+ ...+.++|++||+.+++..+||+++++.+|++ +..++.
T Consensus 155 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~--~~~~~~ 226 (242)
T TIGR03411 155 GMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSV--LAEGSL 226 (242)
T ss_pred HHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeE--EeeCCH
Confidence 9999999999999999999999998655 12378999999999999999999999999998 334444
No 136
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.90 E-value=3.9e-23 Score=207.98 Aligned_cols=157 Identities=22% Similarity=0.308 Sum_probs=116.6
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
.++++.+|+++|+... ....+++++ +.+|++++|+||||||||||+++|+|++.|+.|. +.+++..
T Consensus 5 ~~l~~~~l~~~~~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~--i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE-HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGE--VSLVGQPLHQMDEEA 81 (228)
T ss_pred ceEEEeeeEEEccCCC-cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCee--EEECCEEcccCCHHH
Confidence 3688999999997310 002478888 8999999999999999999999999999998875 3333311
Q ss_pred -------ccccC----CCCCCC-------------------------------CCch--hhhccCCChhHHHHHHHHHHH
Q 005344 257 -------EIGGD----GDVPHS-------------------------------GIGR--ARRMQVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 257 -------EIa~~----~~ip~~-------------------------------~ig~--~rr~~v~s~G~qQRV~IArAL 292 (701)
.+++. ..++.. ++.. .....-.|+|++||++||+++
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al 161 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHH
Confidence 01110 000000 0000 001122477999999999999
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 293 NHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+.+|++||+||||++||+.+...+ ++ .|.+||++||+.++... ||+++++.+|++
T Consensus 162 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i 224 (228)
T PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQL 224 (228)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEE
Confidence 999999999999999999988554 23 48999999999998865 999999999987
No 137
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.90 E-value=5e-23 Score=212.78 Aligned_cols=164 Identities=18% Similarity=0.210 Sum_probs=121.4
Q ss_pred eEEEEeEEEEECccc----ccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-----
Q 005344 189 KMQVIGLTCRVGRAV----AGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN----- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v----~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~----- 256 (701)
++++++|++.|+... .+...+|+++ +.+|++++|+|||||||||||++|+|++.|++|. +++++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGT--VSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEECCEEccccC
Confidence 478999999996210 0124688988 8999999999999999999999999999998875 3333311
Q ss_pred ---------ccccCCC-----C-CCC--------------CCch----------hhhc-----------cCCChhHHHHH
Q 005344 257 ---------EIGGDGD-----V-PHS--------------GIGR----------ARRM-----------QVPNVNMQHSV 286 (701)
Q Consensus 257 ---------EIa~~~~-----i-p~~--------------~ig~----------~rr~-----------~v~s~G~qQRV 286 (701)
.+++... + +.. .+.. ...+ .-.|+||+||+
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv 159 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRI 159 (265)
T ss_pred HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHH
Confidence 0111000 0 000 0000 0011 12467999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||++++++|++||+|||+++||+.++..+ .+ .|.|+|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 160 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 235 (265)
T TIGR02769 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI--VEECDV 235 (265)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEE--EEECCH
Confidence 999999999999999999999999987443 33 489999999999999999999999999998 444554
No 138
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=5e-23 Score=204.88 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=114.1
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc----------------EEE
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------RVV 250 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------rVi 250 (701)
+++++++++|+.. . + ++ +.+|++++|+||||||||||+++|+|++.|+.|+ .++
T Consensus 1 i~~~~l~~~~~~~-----~-~-~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ-----P-M-HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE-----e-c-ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEE
Confidence 3688999999732 1 1 55 8999999999999999999999999999998885 133
Q ss_pred EEcCCcccc-cC--------CCCCCCC-----------------Cch--hhhccCCChhHHHHHHHHHHHccCCCEEEEc
Q 005344 251 IVDTSNEIG-GD--------GDVPHSG-----------------IGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIID 302 (701)
Q Consensus 251 iVd~~~EIa-~~--------~~ip~~~-----------------ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILD 302 (701)
++.+...+- .. ....... +.. .....-.|+||+||++||++++.+|++||+|
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllD 153 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLD 153 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 333322110 00 0000000 000 0011235789999999999999999999999
Q ss_pred CCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 303 EIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 303 EPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
||+++||+.++..+ + +.|.++|++||+.+.+..+||+++++.+|++
T Consensus 154 EP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 207 (211)
T cd03298 154 EPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEE
Confidence 99999999998554 2 3489999999999999999999999999997
No 139
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=4.3e-23 Score=226.45 Aligned_cols=164 Identities=20% Similarity=0.313 Sum_probs=121.7
Q ss_pred eEEEEeEEEEECccc-------------------ccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCC
Q 005344 189 KMQVIGLTCRVGRAV-------------------AGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHM 246 (701)
Q Consensus 189 ~IeI~nLs~rygr~v-------------------~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~G 246 (701)
+|+++||++.||... .|...+|+++ +.+|++++|+||||||||||||+|+|++.|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 467778887777531 1223367887 899999999999999999999999999999988
Q ss_pred cEEEEEcCCc---------------ccccC----CCCCCC-------------CCch--------------------hhh
Q 005344 247 KRVVIVDTSN---------------EIGGD----GDVPHS-------------GIGR--------------------ARR 274 (701)
Q Consensus 247 krViiVd~~~---------------EIa~~----~~ip~~-------------~ig~--------------------~rr 274 (701)
+ +++++.+ .+++. ..+++. ++.. .+.
T Consensus 84 ~--I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~ 161 (400)
T PRK10070 84 Q--VLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY 161 (400)
T ss_pred E--EEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC
Confidence 6 4444321 11111 011110 0000 001
Q ss_pred ccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCC
Q 005344 275 MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVG 346 (701)
Q Consensus 275 ~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G 346 (701)
..-.|+|||||++||++++.+|++||+||||++||+.++..+ . +.|.|+|++||+.+++..+||+++++.+|
T Consensus 162 ~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G 241 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241 (400)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 112478999999999999999999999999999999998554 2 35899999999999999999999999999
Q ss_pred eEEEEecCcH
Q 005344 347 GIESVTLGDE 356 (701)
Q Consensus 347 ~I~~V~lgd~ 356 (701)
++ +..++.
T Consensus 242 ~i--~~~g~~ 249 (400)
T PRK10070 242 EV--VQVGTP 249 (400)
T ss_pred EE--EecCCH
Confidence 98 444544
No 140
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=4.6e-23 Score=203.55 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=119.0
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcC--CCCCCcEEEEEcCCc-------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARML--ADDHMKRVVIVDTSN------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlL--sp~~GkrViiVd~~~------- 256 (701)
.++++++++.|+... +...+++++ +.+|++++|+||||||||||+++|+|++ .++.|. +.+++.+
T Consensus 3 ~l~~~~l~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~--i~~~g~~~~~~~~~ 79 (192)
T cd03232 3 VLTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGE--ILINGRPLDKNFQR 79 (192)
T ss_pred EEEEeeeEEEecCCC-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceE--EEECCEehHHHhhh
Confidence 578999999997310 113588888 8999999999999999999999999986 367786 5555532
Q ss_pred ccccCCCC----CCCCCchhh----hccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCC
Q 005344 257 EIGGDGDV----PHSGIGRAR----RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGV 321 (701)
Q Consensus 257 EIa~~~~i----p~~~ig~~r----r~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~Gv 321 (701)
.+++.... +...+.... ...-.|+|++||++||++++.+|++||+|||+++||+.++..+ ++.|.
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 159 (192)
T cd03232 80 STGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQ 159 (192)
T ss_pred ceEEecccCccccCCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCC
Confidence 12211111 111111110 1124788999999999999999999999999999999998554 44589
Q ss_pred EEEEEEcChh-HHHHhcCcEEEEeC-CeE
Q 005344 322 QLVGTAHGMT-IDNIVKNPSLQILV-GGI 348 (701)
Q Consensus 322 tVIiTTHd~~-l~~~l~drvlvl~~-G~I 348 (701)
++|++||+.+ .+..+||+++.+.+ |++
T Consensus 160 tiiivtH~~~~~~~~~~d~i~~l~~~g~i 188 (192)
T cd03232 160 AILCTIHQPSASIFEKFDRLLLLKRGGKT 188 (192)
T ss_pred EEEEEEcCChHHHHhhCCEEEEEcCCCeE
Confidence 9999999998 46789999999998 887
No 141
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.90 E-value=7.2e-23 Score=207.37 Aligned_cols=160 Identities=22% Similarity=0.237 Sum_probs=118.7
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcC--CCCCCc-----------------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARML--ADDHMK----------------- 247 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlL--sp~~Gk----------------- 247 (701)
+++++|+++|+. ..+|+++ +.+|++++|+||||||||||+++|+|++ .|++|.
T Consensus 1 l~~~~l~~~~~~-----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR01978 1 LKIKDLHVSVED-----KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERA 75 (243)
T ss_pred CeEeeEEEEECC-----EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhh
Confidence 468899999973 3588888 8999999999999999999999999995 677774
Q ss_pred --EEEEEcCCcccc-c-------------CCC------CCC-------------CCCch---hhhccC-CChhHHHHHHH
Q 005344 248 --RVVIVDTSNEIG-G-------------DGD------VPH-------------SGIGR---ARRMQV-PNVNMQHSVMI 288 (701)
Q Consensus 248 --rViiVd~~~EIa-~-------------~~~------ip~-------------~~ig~---~rr~~v-~s~G~qQRV~I 288 (701)
.++++.+...+. . ... ... .++.. .+.... .|+||+||++|
T Consensus 76 ~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~l 155 (243)
T TIGR01978 76 RAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEI 155 (243)
T ss_pred ccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHH
Confidence 022332221100 0 000 000 01110 011122 67899999999
Q ss_pred HHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHh-cCcEEEEeCCeEEEEecCcH
Q 005344 289 EAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIV-KNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 289 ArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l-~drvlvl~~G~I~~V~lgd~ 356 (701)
|++++.+|++||+||||++||+.++..+ ++.|.|||++||+.+++..+ ||+++++.+|++ +..++.
T Consensus 156 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i--~~~g~~ 229 (243)
T TIGR01978 156 LQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRI--VKSGDV 229 (243)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEE--EEecCH
Confidence 9999999999999999999999998554 44689999999999999988 899999999998 434444
No 142
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.9e-23 Score=211.78 Aligned_cols=163 Identities=22% Similarity=0.360 Sum_probs=122.4
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc----------------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK---------------- 247 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk---------------- 247 (701)
+-++++.+|+++|+. ..+|+++ +.+|++++|+|||||||||||++|+|++.|+.|.
T Consensus 5 ~~~l~i~~l~~~~~~-----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (265)
T PRK10253 5 VARLRGEQLTLGYGK-----YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79 (265)
T ss_pred ccEEEEEEEEEEECC-----EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHH
Confidence 346889999999983 3588888 8999999999999999999999999999998875
Q ss_pred --EEEEEcCCccccc---------CCCCCCC---------------------CCch--hhhccCCChhHHHHHHHHHHHc
Q 005344 248 --RVVIVDTSNEIGG---------DGDVPHS---------------------GIGR--ARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 248 --rViiVd~~~EIa~---------~~~ip~~---------------------~ig~--~rr~~v~s~G~qQRV~IArAL~ 293 (701)
.++++.+...... ....+.. ++.. .+...-.|+|++||++||++++
T Consensus 80 ~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 159 (265)
T PRK10253 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA 159 (265)
T ss_pred hhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHh
Confidence 1223332211100 0000000 0000 0011224779999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 294 HMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
.+|++||+||||++||+.++..+ .+ .|.++|++||+.+.+..+||+++.+.+|++ +..++.
T Consensus 160 ~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 228 (265)
T PRK10253 160 QETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKI--VAQGAP 228 (265)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 99999999999999999988544 33 489999999999999999999999999998 444544
No 143
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=7.4e-23 Score=205.85 Aligned_cols=156 Identities=17% Similarity=0.249 Sum_probs=116.6
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.++++|++++|+. ...+++++ +.+|++++|+|||||||||||++|+|++.|+.|.
T Consensus 2 ~l~~~~l~~~~~~----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (229)
T cd03254 2 EIEFENVNFSYDE----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS 77 (229)
T ss_pred eEEEEEEEEecCC----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhh
Confidence 3679999999972 23588888 8999999999999999999999999999998885
Q ss_pred EEEEEcCCcccccC------C-CCCCC------------CCch-hh------------hccCCChhHHHHHHHHHHHccC
Q 005344 248 RVVIVDTSNEIGGD------G-DVPHS------------GIGR-AR------------RMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 rViiVd~~~EIa~~------~-~ip~~------------~ig~-~r------------r~~v~s~G~qQRV~IArAL~~~ 295 (701)
.+.++.+...+... . ..... ++.. .. ...-.|+|++||++||++++.+
T Consensus 78 ~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 78 MIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred hEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 12233222111000 0 00000 0000 00 1123578999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 296 PETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
|++||+|||+++||+.++..+ ...|.+||++||+.+.+.. ||+++.+.+|++.
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~ 216 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKILVLDDGKII 216 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEEeCCeEE
Confidence 999999999999999998644 2248999999999999864 9999999999983
No 144
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=4.8e-23 Score=215.30 Aligned_cols=166 Identities=19% Similarity=0.296 Sum_probs=122.9
Q ss_pred hccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCC---Cc-----------
Q 005344 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDH---MK----------- 247 (701)
Q Consensus 185 ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~---Gk----------- 247 (701)
|++.++++++|+++|+.. ...+++++ |.+|++++|+||||||||||+++|+|++.|+. |+
T Consensus 1 ~~~~~l~i~~l~~~~~~~---~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~ 77 (282)
T PRK13640 1 MKDNIVEFKHVSFTYPDS---KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK 77 (282)
T ss_pred CCCceEEEEEEEEEcCCC---CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC
Confidence 467789999999999631 23578888 89999999999999999999999999998876 54
Q ss_pred -------EEEEEcCCcc--cccC------C-CCCCCCCch----------h----------hhccCCChhHHHHHHHHHH
Q 005344 248 -------RVVIVDTSNE--IGGD------G-DVPHSGIGR----------A----------RRMQVPNVNMQHSVMIEAV 291 (701)
Q Consensus 248 -------rViiVd~~~E--Ia~~------~-~ip~~~ig~----------~----------rr~~v~s~G~qQRV~IArA 291 (701)
+++++.+... +... . .....+... . ......|+|++||++||++
T Consensus 78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 1333333211 0000 0 000000000 0 0111247799999999999
Q ss_pred HccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 292 ENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 292 L~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++++|++||+|||+++||+.++..+ .+ .|.+||++||+.+++. +||+++++.+|++ +..++.
T Consensus 158 l~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i--~~~g~~ 227 (282)
T PRK13640 158 LAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKL--LAQGSP 227 (282)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEE--EEeCCH
Confidence 9999999999999999999998544 33 4899999999999985 7999999999998 445554
No 145
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7.8e-23 Score=209.46 Aligned_cols=161 Identities=17% Similarity=0.192 Sum_probs=119.3
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC-----CCc-------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADD-----HMK------------- 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~-----~Gk------------- 247 (701)
++++++++++|+. ..+++++ +.+|++++|+|+||||||||+++|+|++.|+ .|+
T Consensus 7 ~l~~~~l~~~~~~-----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 7 IIETENLNLFYTD-----FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred eEEEeeeEEEeCC-----ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 6889999999973 3588888 8999999999999999999999999999863 564
Q ss_pred -------EEEEEcCCcccccC--------CCCCC--C----------------CCc------hhhhccCCChhHHHHHHH
Q 005344 248 -------RVVIVDTSNEIGGD--------GDVPH--S----------------GIG------RARRMQVPNVNMQHSVMI 288 (701)
Q Consensus 248 -------rViiVd~~~EIa~~--------~~ip~--~----------------~ig------~~rr~~v~s~G~qQRV~I 288 (701)
.|+++.+...+-.. ..... . ++. ......-.|+||+||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~l 161 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCI 161 (254)
T ss_pred cHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHH
Confidence 12222222110000 00000 0 000 000112257799999999
Q ss_pred HHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 289 EAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 289 ArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++++.+|++||+||||++||+.++..+ ...+.++|++||+.+++..+||+++++.+|++ +..++.
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 233 (254)
T PRK14273 162 ARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCI--EEESST 233 (254)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 9999999999999999999999998554 22478999999999999999999999999998 444444
No 146
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.90 E-value=7.2e-23 Score=210.19 Aligned_cols=160 Identities=23% Similarity=0.341 Sum_probs=120.9
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------E
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------R 248 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------r 248 (701)
+++.|+++.|+. ..+|+++ +.+|++++|+|+||||||||+++|+|+++|+.|+ .
T Consensus 2 l~~~~l~~~~~~-----~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (256)
T TIGR03873 2 LRLSRVSWSAGG-----RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR 76 (256)
T ss_pred ceEEeEEEEECC-----EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhh
Confidence 578999999973 3688888 8999999999999999999999999999998884 1
Q ss_pred EEEEcCCcccccC---------CCCCC---CCCc--h--------hhh----------ccCCChhHHHHHHHHHHHccCC
Q 005344 249 VVIVDTSNEIGGD---------GDVPH---SGIG--R--------ARR----------MQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 249 ViiVd~~~EIa~~---------~~ip~---~~ig--~--------~rr----------~~v~s~G~qQRV~IArAL~~~P 296 (701)
++++.+....... ..... .... . ... ..-.|+|++||++||++++.+|
T Consensus 77 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 77 VALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred eEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 3333332211000 00000 0000 0 001 1124679999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 297 ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++||+||||++||+.+...+ ++.|.+||++||+.+.+..+||+++++.+|++ +..++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 221 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRV--VAAGPP 221 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCE--EEecCH
Confidence 99999999999999998544 44589999999999999999999999999998 444554
No 147
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.90 E-value=7.1e-23 Score=207.25 Aligned_cols=161 Identities=19% Similarity=0.267 Sum_probs=118.8
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------E
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------R 248 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------r 248 (701)
++++|++++|+. +...+++++ +.+|++++|+||||||||||+++|+|++.|++|. .
T Consensus 1 i~~~~l~~~~~~---~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (237)
T cd03252 1 ITFEHVRFRYKP---DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQ 77 (237)
T ss_pred CEEEEEEEecCC---CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhc
Confidence 368899999963 123578888 8999999999999999999999999999998885 1
Q ss_pred EEEEcCCcccccC---C--CC--CCC------------CCch-------------hhhccCCChhHHHHHHHHHHHccCC
Q 005344 249 VVIVDTSNEIGGD---G--DV--PHS------------GIGR-------------ARRMQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 249 ViiVd~~~EIa~~---~--~i--p~~------------~ig~-------------~rr~~v~s~G~qQRV~IArAL~~~P 296 (701)
++++.+...+... . .+ ... ++.. .......|+||+||++||++++.+|
T Consensus 78 i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (237)
T cd03252 78 VGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP 157 (237)
T ss_pred EEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC
Confidence 3333332211000 0 00 000 0000 0011235789999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 297 ETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++||+|||+++||+.+...+ ...|.++|++||+.+++. .||+++++.+|++ +..++.
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i--~~~~~~ 220 (237)
T cd03252 158 RILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRI--VEQGSH 220 (237)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEE--EEEcCH
Confidence 99999999999999998544 124899999999999986 5999999999998 444544
No 148
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.8e-23 Score=213.88 Aligned_cols=163 Identities=18% Similarity=0.225 Sum_probs=121.3
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc---------------E
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK---------------R 248 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk---------------r 248 (701)
+.++++.+|+++|+. ...+++++ +.+|++++|+||||||||||+++|+|++.|+.|. .
T Consensus 4 ~~~l~~~~l~~~~~~----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (272)
T PRK15056 4 QAGIVVNDVTVTWRN----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNL 79 (272)
T ss_pred hceEEEEeEEEEecC----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccce
Confidence 446889999999962 23588888 8999999999999999999999999999998874 2
Q ss_pred EEEEcCCccccc----C--CC-----CCCCC---Cc-h---------hh----------hccCCChhHHHHHHHHHHHcc
Q 005344 249 VVIVDTSNEIGG----D--GD-----VPHSG---IG-R---------AR----------RMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 249 ViiVd~~~EIa~----~--~~-----ip~~~---ig-~---------~r----------r~~v~s~G~qQRV~IArAL~~ 294 (701)
+.++.+...... . .. ....+ .. . .. ...-.|+|++||++||++++.
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~ 159 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ 159 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 444443321100 0 00 00000 00 0 00 112247799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+|||+++||+.++..+ ++.|.+||++||+.+.+..+||+++.+ +|++ +..++.
T Consensus 160 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i--~~~g~~ 225 (272)
T PRK15056 160 QGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTV--LASGPT 225 (272)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEE--EeecCH
Confidence 9999999999999999998554 445899999999999999999998766 8988 434444
No 149
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.90 E-value=5.9e-23 Score=205.16 Aligned_cols=152 Identities=18% Similarity=0.248 Sum_probs=113.5
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc----------------EEE
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------RVV 250 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------rVi 250 (701)
+++++|+++|+. .+.++ +.+|++++|+||||||||||+++|+|++.|++|+ .++
T Consensus 1 ~~~~~l~~~~~~-------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceE
Confidence 368899999972 23455 8999999999999999999999999999999885 122
Q ss_pred EEcCCccccc-C--------CCCCCC-----------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEc
Q 005344 251 IVDTSNEIGG-D--------GDVPHS-----------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIID 302 (701)
Q Consensus 251 iVd~~~EIa~-~--------~~ip~~-----------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILD 302 (701)
++.+...+-. . ...+.. ++.. .+...-.|+||+||++||++++.+|++||+|
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 153 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLD 153 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 3332211100 0 000000 0000 0011224779999999999999999999999
Q ss_pred CCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 303 EIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 303 EPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
|||++||+.++..+ .+ .|.|+|++||+.+++..+||+++.+.+|++
T Consensus 154 EPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i 207 (213)
T TIGR01277 154 EPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207 (213)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeE
Confidence 99999999988544 33 489999999999999999999999999998
No 150
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.7e-23 Score=210.04 Aligned_cols=163 Identities=21% Similarity=0.328 Sum_probs=121.7
Q ss_pred hccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-----CCCcEEEEEcCCc
Q 005344 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-----DHMKRVVIVDTSN 256 (701)
Q Consensus 185 ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-----~~GkrViiVd~~~ 256 (701)
.+..++++++++++|+. ..+|+++ +.+|++++|+|+||||||||+++|+|++.+ +.|+ +.+++.+
T Consensus 8 ~~~~~l~~~~l~~~~~~-----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~--i~~~g~~ 80 (258)
T PRK14268 8 VAQPQIKVENLNLWYGE-----KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGK--VSIEGED 80 (258)
T ss_pred ccceeEEEeeeEEEeCC-----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceE--EEECCEE
Confidence 34567899999999973 3588888 899999999999999999999999999874 5665 3333211
Q ss_pred -------------ccccCC----CCCC------------CCCch----------hh--------------hccCCChhHH
Q 005344 257 -------------EIGGDG----DVPH------------SGIGR----------AR--------------RMQVPNVNMQ 283 (701)
Q Consensus 257 -------------EIa~~~----~ip~------------~~ig~----------~r--------------r~~v~s~G~q 283 (701)
.+++.. .++. .+... .. ...-.|+|++
T Consensus 81 i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 81 IYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQ 160 (258)
T ss_pred cccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHH
Confidence 011100 0000 00000 00 1112467999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 284 HSVMIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 284 QRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||++||++++.+|++||+||||++||+.++..+ ...|.|+|++||+.+++..+||+++++..|++ +..++.
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~~~~ 237 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGEL--IEFGQT 237 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 999999999999999999999999999998554 12479999999999999999999999999998 444544
No 151
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=2.5e-23 Score=218.66 Aligned_cols=181 Identities=21% Similarity=0.282 Sum_probs=136.2
Q ss_pred eEEEEeEEEEECccc-------------------ccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCC
Q 005344 189 KMQVIGLTCRVGRAV-------------------AGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHM 246 (701)
Q Consensus 189 ~IeI~nLs~rygr~v-------------------~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~G 246 (701)
.++++|++|-||... .|+.--++++ +..||+++|+|-+|||||||+|+|.|++.|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 467888888887532 1222334555 889999999999999999999999999999999
Q ss_pred cEEEEEcCCcccc-------------------cCCCCCCCC-------------Cchh--------------------hh
Q 005344 247 KRVVIVDTSNEIG-------------------GDGDVPHSG-------------IGRA--------------------RR 274 (701)
Q Consensus 247 krViiVd~~~EIa-------------------~~~~ip~~~-------------ig~~--------------------rr 274 (701)
+ +++++.+-.. ..+.+||.. +... ..
T Consensus 84 ~--ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~y 161 (386)
T COG4175 84 E--ILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKY 161 (386)
T ss_pred e--EEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcC
Confidence 8 7888763111 113445531 1110 01
Q ss_pred ccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCC
Q 005344 275 MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVG 346 (701)
Q Consensus 275 ~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G 346 (701)
-.-+|+||||||.|||||+.+|++|++|||+++|||.-+.++ ++-++|||++|||++++-.+.|++.+|.+|
T Consensus 162 p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG 241 (386)
T COG4175 162 PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDG 241 (386)
T ss_pred cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCC
Confidence 122578999999999999999999999999999999988655 456899999999999999999999999999
Q ss_pred eEEEEecCcHHHHhhhhHHHHhhccCCCcceeeee
Q 005344 347 GIESVTLGDEEAKKRKVQKTILERKGPPTFTCAVE 381 (701)
Q Consensus 347 ~I~~V~lgd~~a~~r~~qe~Iler~~~p~f~~~ve 381 (701)
+| |..|++ +.|+..+..+|....++
T Consensus 242 ~i--vQ~Gtp--------~eIl~~PAndYV~~Fv~ 266 (386)
T COG4175 242 EI--VQVGTP--------EEILLNPANDYVRDFVR 266 (386)
T ss_pred eE--EEeCCH--------HHHHcCccHHHHHHHHh
Confidence 99 556666 34555665555444333
No 152
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.90 E-value=7.5e-23 Score=204.59 Aligned_cols=155 Identities=13% Similarity=0.187 Sum_probs=115.9
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------E
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------R 248 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------r 248 (701)
+++.+++++|+.. ...+++++ +.+|++++|+||||||||||+++|+|++.|+.|. .
T Consensus 3 l~~~~l~~~~~~~---~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 3 IEFRNVSFSYPNQ---EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred EEEEEEEEEcCCC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 6799999999731 23578887 8999999999999999999999999999988875 1
Q ss_pred EEEEcCCcccccC------C-CCCCC------------CCchh-hh------------ccCCChhHHHHHHHHHHHccCC
Q 005344 249 VVIVDTSNEIGGD------G-DVPHS------------GIGRA-RR------------MQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 249 ViiVd~~~EIa~~------~-~ip~~------------~ig~~-rr------------~~v~s~G~qQRV~IArAL~~~P 296 (701)
+.++.+...+... . ..... ++... .. ..-.|+||+||++||++++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 3333332211000 0 00000 01000 01 1246789999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 297 ETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
++||+||||++||+.++..+ . ..+.++|++||+.++. .+||+++.+.+|++
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i 216 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRI 216 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeE
Confidence 99999999999999998654 1 1248999999999987 69999999999987
No 153
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.90 E-value=2.6e-23 Score=210.20 Aligned_cols=152 Identities=23% Similarity=0.320 Sum_probs=118.2
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--cc-cCCC
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE--IG-GDGD 263 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E--Ia-~~~~ 263 (701)
+.+.+++++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|. +.+++..- .. ....
T Consensus 23 l~~~~~~~~~~~-----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~--i~~~g~~~~~~~~~~~~ 95 (224)
T cd03220 23 LGILGRKGEVGE-----FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGT--VTVRGRVSSLLGLGGGF 95 (224)
T ss_pred hhhhhhhhhcCC-----eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCEEchhhcccccC
Confidence 567888888873 4688988 8999999999999999999999999999999887 55554310 00 0000
Q ss_pred CCCC-------------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccH
Q 005344 264 VPHS-------------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEA 310 (701)
Q Consensus 264 ip~~-------------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~ 310 (701)
.+.. ++.. .+...-.|+|++||++||++++++|++||+|||+++||+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~ 175 (224)
T cd03220 96 NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175 (224)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 0000 0000 011122477999999999999999999999999999999
Q ss_pred HHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 311 LAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 311 ~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
.++..+ ++.|.+||++||+.+++..+||+++++.+|++
T Consensus 176 ~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 220 (224)
T cd03220 176 AFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 987543 44589999999999999999999999999997
No 154
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=8e-23 Score=213.27 Aligned_cols=165 Identities=19% Similarity=0.268 Sum_probs=122.6
Q ss_pred ceEEEEeEEEEECcccc-cccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-------
Q 005344 188 RKMQVIGLTCRVGRAVA-GSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~-G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~------- 256 (701)
.++++++|+++|+.... +...+|+++ |.+|++++|+|+||||||||+++|+|++.|+.|. +++++..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~--i~i~g~~i~~~~~~ 80 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGK--VYVDGLDTSDEENL 80 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEECCEeccccccH
Confidence 46899999999973210 124589988 8999999999999999999999999999999885 4444321
Q ss_pred -----ccccCCCCC-----CC-------------CCc------------------hh--hhccCCChhHHHHHHHHHHHc
Q 005344 257 -----EIGGDGDVP-----HS-------------GIG------------------RA--RRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 257 -----EIa~~~~ip-----~~-------------~ig------------------~~--rr~~v~s~G~qQRV~IArAL~ 293 (701)
.+++....+ .. +.. .. +...-.|+||+||++||++++
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 011000000 00 000 00 011224779999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 294 HMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
.+|++||+|||+++||+.++..+ .+ .|.|+|++||+++.+.. ||+++++.+|++ +..++.+
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i--~~~g~~~ 229 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKV--VMEGTPK 229 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEE--EEecCHH
Confidence 99999999999999999998554 23 49999999999999876 999999999998 4445543
No 155
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=9.8e-23 Score=208.02 Aligned_cols=161 Identities=19% Similarity=0.254 Sum_probs=119.7
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-----CCCc-------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-----DHMK------------- 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-----~~Gk------------- 247 (701)
++++++|+++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.| +.|.
T Consensus 3 ~l~~~~l~~~~~~-----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSFGQ-----VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEECC-----eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 5889999999973 3588888 899999999999999999999999999974 4664
Q ss_pred -----EEEEEcCCcccc-cC--------C----CC--CC-------------CCCch------hhhccCCChhHHHHHHH
Q 005344 248 -----RVVIVDTSNEIG-GD--------G----DV--PH-------------SGIGR------ARRMQVPNVNMQHSVMI 288 (701)
Q Consensus 248 -----rViiVd~~~EIa-~~--------~----~i--p~-------------~~ig~------~rr~~v~s~G~qQRV~I 288 (701)
.|+++.+..... .. . .. .. .++.. .....-.|+|++||++|
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 157 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCI 157 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHH
Confidence 133333322110 00 0 00 00 00000 00112247799999999
Q ss_pred HHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 289 EAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 289 ArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++++.+|++||+||||++||+.++..+ ...|.++|++||+.+.+..+||+++++..|++ +..++.
T Consensus 158 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 229 (250)
T PRK14247 158 ARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQI--VEWGPT 229 (250)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeE--EEECCH
Confidence 9999999999999999999999998554 12489999999999999999999999999998 434444
No 156
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.1e-23 Score=220.48 Aligned_cols=156 Identities=17% Similarity=0.250 Sum_probs=117.6
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
||++ +|+++|+.. . + ++ +.+|++++|+|||||||||||++|+|++.|++|+ +.+++..
T Consensus 1 ~l~~-~l~k~~~~~-----~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~--I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 1 MLEL-NFKQQLGDL-----C-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGR--IVLNGRVLFDAEKGIC 70 (352)
T ss_pred CeEE-EEEEEeCCE-----E-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCEEccccccccc
Confidence 3677 999999842 1 2 45 8999999999999999999999999999999886 4444321
Q ss_pred ------ccccC----CCCCCCC-------------------------Cch--hhhccCCChhHHHHHHHHHHHccCCCEE
Q 005344 257 ------EIGGD----GDVPHSG-------------------------IGR--ARRMQVPNVNMQHSVMIEAVENHMPETI 299 (701)
Q Consensus 257 ------EIa~~----~~ip~~~-------------------------ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVI 299 (701)
.+++. ..+++.. +.. .+...-.|+|||||++||++++.+|++|
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ll 150 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELL 150 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 11111 1111110 000 0111225789999999999999999999
Q ss_pred EEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 300 IIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 300 ILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|+|||+++||+..+..+ .+ .|.++|++||+.+++..+||+++++.+|++ +..++.
T Consensus 151 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i--~~~g~~ 213 (352)
T PRK11144 151 LMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKV--KAFGPL 213 (352)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEE--EEecCH
Confidence 99999999999988544 23 489999999999999999999999999998 444555
No 157
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.90 E-value=5.9e-23 Score=230.83 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=122.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
+++++||+++|+. ..+|+++ +.+|++++|+|||||||||||++|+|++.|+.|. +.+++..
T Consensus 11 ~l~~~~l~~~~~~-----~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 11 LLCARSISKQYSG-----VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGT--LEIGGNPCARLTPAKA 83 (510)
T ss_pred eEEEEeEEEEeCC-----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCEECCCCCHHHH
Confidence 6899999999973 3588888 8999999999999999999999999999998886 4444321
Q ss_pred ---ccccCC----CCCCC---------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEE
Q 005344 257 ---EIGGDG----DVPHS---------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETII 300 (701)
Q Consensus 257 ---EIa~~~----~ip~~---------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVII 300 (701)
.+++.. .++.. ++.. .+...-.|+|||||++||++++++|++||
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lll 163 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILI 163 (510)
T ss_pred HhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 011100 00000 0000 01112357899999999999999999999
Q ss_pred EcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 301 IDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 301 LDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||||++||+.++..+ ++.|.+||++||+.+.+..+||+++++.+|++. ..++.
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~--~~g~~ 224 (510)
T PRK15439 164 LDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA--LSGKT 224 (510)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE--EecCh
Confidence 9999999999998544 456999999999999999999999999999983 34544
No 158
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.3e-22 Score=209.86 Aligned_cols=162 Identities=19% Similarity=0.262 Sum_probs=119.3
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC-----CCCCc------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA-----DDHMK------------ 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs-----p~~Gk------------ 247 (701)
.+++++|++++|+. ..+|+++ +.+|++++|+|+||||||||+++|+|++. |+.|.
T Consensus 20 ~~l~~~~l~~~~~~-----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 20 HILEVKDLSIYYGE-----KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred ceEEEEEEEEEeCC-----ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 36889999999973 3688888 89999999999999999999999999864 56664
Q ss_pred --------EEEEEcCCcccccC------------CCCCCC--------------CCc----h--hhhccCCChhHHHHHH
Q 005344 248 --------RVVIVDTSNEIGGD------------GDVPHS--------------GIG----R--ARRMQVPNVNMQHSVM 287 (701)
Q Consensus 248 --------rViiVd~~~EIa~~------------~~ip~~--------------~ig----~--~rr~~v~s~G~qQRV~ 287 (701)
.++++.+....... ...... ++. . .....-.|+|++||++
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred ccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 12233222110000 000000 000 0 0111225779999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||++++++|++||+||||++||+.++..+ ...+.|||++||+.+.+..+||+++++.+|++ +..++.
T Consensus 175 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i--~~~~~~ 247 (268)
T PRK14248 175 IARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDL--VEYDQT 247 (268)
T ss_pred HHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 99999999999999999999999998654 12378999999999999999999999999998 444544
No 159
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.90 E-value=1.1e-22 Score=208.87 Aligned_cols=160 Identities=18% Similarity=0.240 Sum_probs=119.4
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC----CCCc--------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD----DHMK-------------- 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp----~~Gk-------------- 247 (701)
.++++||+++|+ ..+|+++ +.+|++++|+|+||||||||+++|+|++.| +.|+
T Consensus 4 ~l~~~~l~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQAA------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEec------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 578999999994 2578888 899999999999999999999999999988 7774
Q ss_pred --EEEEEcCCcccccCC---------------CCCC-----------CCCch-----hhhccCCChhHHHHHHHHHHHcc
Q 005344 248 --RVVIVDTSNEIGGDG---------------DVPH-----------SGIGR-----ARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 --rViiVd~~~EIa~~~---------------~ip~-----------~~ig~-----~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
.|.++.+........ .... .++.. .....-.|+|++||++||++++.
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 157 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC 157 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc
Confidence 133333321100000 0000 00000 00112246799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+|||+++||+.++..+ .+ .|.+||++||+.+.+..+||+++.+.+|++ +..++.
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i--~~~~~~ 225 (254)
T PRK10418 158 EAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRI--VEQGDV 225 (254)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEE--EEecCH
Confidence 9999999999999999987443 23 489999999999999999999999999998 444544
No 160
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.1e-22 Score=209.10 Aligned_cols=165 Identities=17% Similarity=0.271 Sum_probs=121.9
Q ss_pred hccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC--C---CCCc---------
Q 005344 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA--D---DHMK--------- 247 (701)
Q Consensus 185 ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs--p---~~Gk--------- 247 (701)
+.+.+++++|+++.|+. ..+|+++ |.+|++++|+|+||||||||+++|+|++. | +.|.
T Consensus 8 ~~~~~l~i~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 8 MKQEVYQINGMNLWYGQ-----HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred cCCceEEEeeEEEEECC-----eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence 56778999999999973 3588888 89999999999999999999999999986 3 3564
Q ss_pred -----------EEEEEcCCccccc--------CC-CC----CC-------------CCCch------hhhccCCChhHHH
Q 005344 248 -----------RVVIVDTSNEIGG--------DG-DV----PH-------------SGIGR------ARRMQVPNVNMQH 284 (701)
Q Consensus 248 -----------rViiVd~~~EIa~--------~~-~i----p~-------------~~ig~------~rr~~v~s~G~qQ 284 (701)
.++++.+...+-. .. .. .. .++.. .....-.|+||+|
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 83 KGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred ccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 1223322211000 00 00 00 00000 0011124779999
Q ss_pred HHHHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 285 SVMIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 285 RV~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||++++++|++||+||||++||+.++..+ ...+.++|++||+.+.+..+||+++++..|++ +..++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 238 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGEL--VECNDT 238 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEE--EEECCH
Confidence 99999999999999999999999999998554 12378999999999999999999999999998 445555
No 161
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.90 E-value=8.3e-23 Score=206.86 Aligned_cols=155 Identities=17% Similarity=0.287 Sum_probs=116.5
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
+++.|++++|+.. +...+++++ +.+|++++|+|+||||||||+++|+|+++|+.|+ +.+++.+
T Consensus 1 l~i~~l~~~~~~~--~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~--i~~~g~~~~~~~~~~~~ 76 (238)
T cd03249 1 IEFKNVSFRYPSR--PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE--ILLDGVDIRDLNLRWLR 76 (238)
T ss_pred CeEEEEEEecCCC--CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCE--EEECCEehhhcCHHHHH
Confidence 3688999999731 123578887 8999999999999999999999999999999886 4444311
Q ss_pred -ccccCCC--------------C--CCC------------CCchh-------------hhccCCChhHHHHHHHHHHHcc
Q 005344 257 -EIGGDGD--------------V--PHS------------GIGRA-------------RRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 -EIa~~~~--------------i--p~~------------~ig~~-------------rr~~v~s~G~qQRV~IArAL~~ 294 (701)
.+++... + ... ++... ......|+|++||++||++++.
T Consensus 77 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~ 156 (238)
T cd03249 77 SQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR 156 (238)
T ss_pred hhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc
Confidence 0110000 0 000 00000 0012357899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 295 MPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+|++||+|||+++||+.++..+ ...|.++|++||+.+++. +||+++++.+|++.
T Consensus 157 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~ 216 (238)
T cd03249 157 NPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVV 216 (238)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEE
Confidence 9999999999999999998654 126899999999999997 79999999999983
No 162
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.90 E-value=7.8e-23 Score=208.01 Aligned_cols=159 Identities=21% Similarity=0.186 Sum_probs=119.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcC--CCCCCcEEEEEcCCc-------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARML--ADDHMKRVVIVDTSN------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlL--sp~~GkrViiVd~~~------- 256 (701)
+++++||+++|+. ..+++++ +.+|++++|+|+||||||||+++|+|++ .|+.|. +.+++.+
T Consensus 1 ~i~~~nl~~~~~~-----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~--i~~~g~~~~~~~~~ 73 (248)
T PRK09580 1 MLSIKDLHVSVED-----KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT--VEFKGKDLLELSPE 73 (248)
T ss_pred CeEEEEEEEEeCC-----eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceE--EEECCCccccCCHH
Confidence 3789999999973 3588888 8999999999999999999999999995 577775 3343321
Q ss_pred -----ccccCCCCC-----------------------C-CCCch---h-----------------hh-c-cCCChhHHHH
Q 005344 257 -----EIGGDGDVP-----------------------H-SGIGR---A-----------------RR-M-QVPNVNMQHS 285 (701)
Q Consensus 257 -----EIa~~~~ip-----------------------~-~~ig~---~-----------------rr-~-~v~s~G~qQR 285 (701)
.++.....+ . ..+.. . .+ . ...|+||+||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHH
Confidence 011000000 0 00000 0 00 0 1367899999
Q ss_pred HHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHh-cCcEEEEeCCeEEEEecCcH
Q 005344 286 VMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIV-KNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 286 V~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l-~drvlvl~~G~I~~V~lgd~ 356 (701)
++||++++.+|++||+||||++||+.++..+ ++.|.|||++||+..++..+ +|+++++.+|++ +..++.
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i--~~~g~~ 230 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI--VKSGDF 230 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeE--EEeCCH
Confidence 9999999999999999999999999988554 34589999999999999887 899999999998 444554
No 163
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.3e-22 Score=205.15 Aligned_cols=159 Identities=21% Similarity=0.237 Sum_probs=116.8
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc----------------EE
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------RV 249 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------rV 249 (701)
++++++|+++|+.. . .++ +.+|++++|+||||||||||+++|+|++.|++|. .+
T Consensus 1 ~l~~~~l~~~~~~~-----~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 73 (232)
T PRK10771 1 MLKLTDITWLYHHL-----P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPV 73 (232)
T ss_pred CeEEEEEEEEECCc-----c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccE
Confidence 36899999999732 1 144 8999999999999999999999999999998885 12
Q ss_pred EEEcCCcccc-cC--------CCCCCCCCch---------hh----------hccCCChhHHHHHHHHHHHccCCCEEEE
Q 005344 250 VIVDTSNEIG-GD--------GDVPHSGIGR---------AR----------RMQVPNVNMQHSVMIEAVENHMPETIII 301 (701)
Q Consensus 250 iiVd~~~EIa-~~--------~~ip~~~ig~---------~r----------r~~v~s~G~qQRV~IArAL~~~PdVIIL 301 (701)
+++.+...+- .. ...+...... .. .....|+|++||++||++++.+|++||+
T Consensus 74 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 153 (232)
T PRK10771 74 SMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLL 153 (232)
T ss_pred EEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2333221100 00 0000000000 00 1112578999999999999999999999
Q ss_pred cCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 302 DEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 302 DEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|||+++||+.++..+ .+ .|.|+|++||+.+++..+||+++.+.+|++ +..++.
T Consensus 154 DEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i--~~~g~~ 214 (232)
T PRK10771 154 DEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRI--AWDGPT 214 (232)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 999999999988543 23 489999999999999999999999999998 444544
No 164
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.90 E-value=4.6e-23 Score=209.68 Aligned_cols=141 Identities=24% Similarity=0.284 Sum_probs=107.1
Q ss_pred ccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------ccccCC-C---C-CCC
Q 005344 206 SAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN----------EIGGDG-D---V-PHS 267 (701)
Q Consensus 206 ~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~----------EIa~~~-~---i-p~~ 267 (701)
...+|+++ +.+|++++|+|+|||||||||++|+|++.|+.|. +.+++.+ .+++.. . + +..
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~--i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 110 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGE--VRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceE--EEECCEEccccchhhcccEEEEcCCccccCCCC
Confidence 34678887 8899999999999999999999999999998885 3333211 011100 0 0 000
Q ss_pred -------------CCch----------hh----------hccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHH
Q 005344 268 -------------GIGR----------AR----------RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAS 314 (701)
Q Consensus 268 -------------~ig~----------~r----------r~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~ 314 (701)
+... .. ...-.|+|++||++||++++++|++||+|||+++||+.++.
T Consensus 111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 190 (236)
T cd03267 111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190 (236)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 0000 00 11124679999999999999999999999999999999986
Q ss_pred HH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 315 TI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 315 ~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
.+ ++ .|.+||++||+.+++..+||+++.+.+|++
T Consensus 191 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 232 (236)
T cd03267 191 NIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 54 22 389999999999999999999999999987
No 165
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=7.4e-23 Score=211.96 Aligned_cols=164 Identities=14% Similarity=0.188 Sum_probs=122.6
Q ss_pred hccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-----
Q 005344 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN----- 256 (701)
Q Consensus 185 ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~----- 256 (701)
++..++++.+++++|+.. ...+++++ +.+|++++|+||||||||||+++|+|++.|+.|. +++++.+
T Consensus 3 ~~~~~l~i~~l~~~~~~~---~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~--i~~~g~~~~~~~ 77 (269)
T PRK13648 3 DKNSIIVFKNVSFQYQSD---ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE--IFYNNQAITDDN 77 (269)
T ss_pred CCCceEEEEEEEEEcCCC---CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE--EEECCEECCcCC
Confidence 455678999999999731 13478888 8999999999999999999999999999998885 4444321
Q ss_pred ------ccccCCC-----CCC-------------CCCch----------hh----------hccCCChhHHHHHHHHHHH
Q 005344 257 ------EIGGDGD-----VPH-------------SGIGR----------AR----------RMQVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 257 ------EIa~~~~-----ip~-------------~~ig~----------~r----------r~~v~s~G~qQRV~IArAL 292 (701)
.+++... ++. ..... .. ...-.|+|++||++||+++
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 157 (269)
T PRK13648 78 FEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVL 157 (269)
T ss_pred HHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH
Confidence 0111100 000 00000 00 1112467999999999999
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 293 NHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+.+|++||+||||++||+.++..+ .+ .|.|+|++||+.+.+.. ||+++++.+|++ +..++.
T Consensus 158 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i--~~~g~~ 226 (269)
T PRK13648 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTV--YKEGTP 226 (269)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEE--EEecCH
Confidence 999999999999999999998544 33 48999999999999875 999999999998 444554
No 166
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.1e-23 Score=215.14 Aligned_cols=163 Identities=23% Similarity=0.315 Sum_probs=127.7
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc-------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE------- 257 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E------- 257 (701)
..+++++|+++||. ..+++++ +.+|++++||||||||||||+++|.|.++|++|+ +++++.+-
T Consensus 3 ~lL~v~~l~k~FGG-----l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~--v~~~G~~it~l~p~~ 75 (250)
T COG0411 3 PLLEVRGLSKRFGG-----LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGT--VIFRGRDITGLPPHR 75 (250)
T ss_pred ceeeeccceeecCC-----EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCce--EEECCcccCCCCHHH
Confidence 45789999999994 4789998 8999999999999999999999999999999998 66665521
Q ss_pred cccC---------CCCCCC-------------------------------------------CCchh--hhccCCChhHH
Q 005344 258 IGGD---------GDVPHS-------------------------------------------GIGRA--RRMQVPNVNMQ 283 (701)
Q Consensus 258 Ia~~---------~~ip~~-------------------------------------------~ig~~--rr~~v~s~G~q 283 (701)
++.. ..++.+ ++... +.-.-.++|+|
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~q 155 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQ 155 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHh
Confidence 1000 000000 00000 00112457999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCc
Q 005344 284 HSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGD 355 (701)
Q Consensus 284 QRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd 355 (701)
+++.||+||+.+|++|+||||.+|+.+....++ .+ .|+|++++-|+++++..+||++++|..|++ +..|+
T Consensus 156 R~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~--IAeG~ 233 (250)
T COG0411 156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV--IAEGT 233 (250)
T ss_pred HHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcC--cccCC
Confidence 999999999999999999999999999887544 44 579999999999999999999999999998 66788
Q ss_pred HHHH
Q 005344 356 EEAK 359 (701)
Q Consensus 356 ~~a~ 359 (701)
+++.
T Consensus 234 P~eV 237 (250)
T COG0411 234 PEEV 237 (250)
T ss_pred HHHH
Confidence 7554
No 167
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.5e-22 Score=207.04 Aligned_cols=159 Identities=19% Similarity=0.374 Sum_probs=119.3
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC-----CCcEEEEEcCCc----
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADD-----HMKRVVIVDTSN---- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~-----~GkrViiVd~~~---- 256 (701)
++++.+|+++|+. ..+|+++ +.+|++++|+||||||||||+++|+|+++|+ .|+ +.+++.+
T Consensus 4 ~l~~~~l~~~~~~-----~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~--i~~~g~~i~~~ 76 (253)
T PRK14267 4 AIETVNLRVYYGS-----NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGE--VRLFGRNIYSP 76 (253)
T ss_pred eEEEEeEEEEeCC-----eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceE--EEECCEEcccc
Confidence 6789999999973 3588988 8999999999999999999999999999873 665 3333211
Q ss_pred ---------ccccC----CCCCCC-------------CC--ch----------hhh--------------ccCCChhHHH
Q 005344 257 ---------EIGGD----GDVPHS-------------GI--GR----------ARR--------------MQVPNVNMQH 284 (701)
Q Consensus 257 ---------EIa~~----~~ip~~-------------~i--g~----------~rr--------------~~v~s~G~qQ 284 (701)
.+++. ..++.. .. .. ... ..-.|+|++|
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 01100 000000 00 00 001 1124679999
Q ss_pred HHHHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 285 SVMIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 285 RV~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||++++.+|++||+|||+++||+.++..+ ...+.++|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~ 232 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL--IEVGPT 232 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEE--EEeCCH
Confidence 99999999999999999999999999998554 12468999999999999999999999999998 444444
No 168
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.89 E-value=1.1e-22 Score=227.06 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=122.6
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------- 257 (701)
+++++||+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|+.|. +.+++...
T Consensus 3 ~l~~~~l~~~~~~-----~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~--i~~~~~~~~~~~~~~~ 75 (490)
T PRK10938 3 SLQISQGTFRLSD-----TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGE--RQSQFSHITRLSFEQL 75 (490)
T ss_pred eEEEEeEEEEcCC-----eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCce--EEECCcccccCCHHHH
Confidence 6899999999973 3588888 8999999999999999999999999999998886 33432110
Q ss_pred ---cccCCCCC------------CC-----------------------CCch--hhhccCCChhHHHHHHHHHHHccCCC
Q 005344 258 ---IGGDGDVP------------HS-----------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPE 297 (701)
Q Consensus 258 ---Ia~~~~ip------------~~-----------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~Pd 297 (701)
++.....+ .. ++.. .+...-.|+|||||++||++++++|+
T Consensus 76 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (490)
T PRK10938 76 QKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPD 155 (490)
T ss_pred HHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 11100000 00 0000 01122357899999999999999999
Q ss_pred EEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 298 TIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 298 VIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||+||||++||+.++..+ ++.|.+||++||+.+.+..+||+++++.+|++ +..+..
T Consensus 156 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i--~~~~~~ 219 (490)
T PRK10938 156 LLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTL--AETGER 219 (490)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEE--EEeCCH
Confidence 9999999999999998544 45589999999999999999999999999998 444544
No 169
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=1.4e-22 Score=201.47 Aligned_cols=154 Identities=17% Similarity=0.236 Sum_probs=117.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
.+++++++++|+.. ...+++++ +.+|++++|+|+||||||||+++|+|++.|+.|. +.+++..
T Consensus 6 ~l~~~~l~~~~~~~---~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~--i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 6 EIEVENLSVRYAPD---LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK--IEIDGIDISTIPLEDL 80 (207)
T ss_pred eEEEEEEEEEeCCC---CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCe--EEECCEEhHHCCHHHH
Confidence 47899999999731 13578888 8999999999999999999999999999998885 3343321
Q ss_pred --ccccCCCCCC-------------CCCch---------hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHH
Q 005344 257 --EIGGDGDVPH-------------SGIGR---------ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALA 312 (701)
Q Consensus 257 --EIa~~~~ip~-------------~~ig~---------~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a 312 (701)
.+++....+. ..... .......++|++||++||++++.+|++||+|||+++||+.+
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 160 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT 160 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 1111000000 00000 01123357899999999999999999999999999999999
Q ss_pred HHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 313 ASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 313 ~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
...+ . ..|.++|++||+.+++.. ||+++.+.+|++
T Consensus 161 ~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i 201 (207)
T cd03369 161 DALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEV 201 (207)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEE
Confidence 8554 1 248999999999999876 999999999998
No 170
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.9e-22 Score=207.78 Aligned_cols=162 Identities=20% Similarity=0.285 Sum_probs=119.4
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC-----CCCCc------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA-----DDHMK------------ 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs-----p~~Gk------------ 247 (701)
.++++.|++++|+. ..+|+++ +.+|++++|+||||||||||+++|+|++. |+.|+
T Consensus 12 ~~l~~~~l~~~~~~-----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 12 SKIQVRNLNFYYGK-----FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred ceEEEEEEEEEeCC-----eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 35789999999973 3588888 89999999999999999999999999986 35664
Q ss_pred --------EEEEEcCCcccccC--------C-----CCCC-------------CCCc----h--hhhccCCChhHHHHHH
Q 005344 248 --------RVVIVDTSNEIGGD--------G-----DVPH-------------SGIG----R--ARRMQVPNVNMQHSVM 287 (701)
Q Consensus 248 --------rViiVd~~~EIa~~--------~-----~ip~-------------~~ig----~--~rr~~v~s~G~qQRV~ 287 (701)
+++++.+....... . .... .++. . .....-.|+||+||++
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 166 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC 166 (260)
T ss_pred cchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence 12233222110000 0 0000 0000 0 0011225779999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||++++.+|++||+||||++||+.++..+ ...|.|+|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 239 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGEL--IEFGNT 239 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 99999999999999999999999988544 12478999999999999999999999999998 444544
No 171
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.1e-22 Score=203.19 Aligned_cols=145 Identities=17% Similarity=0.252 Sum_probs=110.4
Q ss_pred eEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------------
Q 005344 194 GLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------------- 256 (701)
Q Consensus 194 nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------------- 256 (701)
+|+++|++. .+ ++ +.+ ++++|+||||||||||+++|+|++.|+.|+ +.+++..
T Consensus 5 ~l~~~~~~~-----~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 5 DIEKRLPDF-----TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGT--IVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred eeeEecCCe-----ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCce--EEECCEecccccchhhhhhHh
Confidence 899999853 23 66 889 999999999999999999999999998886 3343311
Q ss_pred -ccccCC----CCCCC-----------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEE
Q 005344 257 -EIGGDG----DVPHS-----------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETII 300 (701)
Q Consensus 257 -EIa~~~----~ip~~-----------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVII 300 (701)
.+++.. .++.. ++.. .....-.|+|||||++||++++.+|++||
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 154 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLL 154 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 011100 00000 0000 00111247799999999999999999999
Q ss_pred EcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 301 IDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 301 LDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+||||++||+.+++.+ ++ .|.++|++||+.+.+..+||+++++.+|++
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 210 (214)
T cd03297 155 LDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRL 210 (214)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 9999999999998554 33 389999999999999999999999999997
No 172
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.89 E-value=6.1e-23 Score=222.73 Aligned_cols=146 Identities=21% Similarity=0.305 Sum_probs=112.6
Q ss_pred cceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------------ccccC----CCC
Q 005344 207 AEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------------EIGGD----GDV 264 (701)
Q Consensus 207 ~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------------EIa~~----~~i 264 (701)
..+++++ |.+|++++|+|||||||||||++|+|++.|++|+ +++++.+ .+++. ..+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~--I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQ--IFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceE--EEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 4567777 8899999999999999999999999999999886 5555421 11111 111
Q ss_pred CCCC-------------Cchh--------------------hhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHH
Q 005344 265 PHSG-------------IGRA--------------------RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEAL 311 (701)
Q Consensus 265 p~~~-------------ig~~--------------------rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~ 311 (701)
|+.. +... +...-.|+|||||++||++|+.+|++||+|||+++||+.
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 2210 0000 011124789999999999999999999999999999999
Q ss_pred HHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 312 AASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 312 a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
.+..+ . +.|.|+|++||+++++..+||++++|.+|++ +..|++
T Consensus 164 ~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~i--v~~g~~ 214 (363)
T TIGR01186 164 IRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEI--VQVGTP 214 (363)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE--EeeCCH
Confidence 98654 2 3489999999999999999999999999998 555655
No 173
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.2e-22 Score=205.06 Aligned_cols=159 Identities=19% Similarity=0.312 Sum_probs=118.1
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
+++.+++++|+.. ...+++++ +.+|++++|+||||||||||+++|+|++.|+.|. +++++.+
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~~~~~~~~~~~ 75 (234)
T cd03251 1 VEFKNVTFRYPGD---GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGR--ILIDGHDVRDYTLASLR 75 (234)
T ss_pred CEEEEEEEEeCCC---CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCE--EEECCEEhhhCCHHHHH
Confidence 4689999999731 12578887 8999999999999999999999999999999885 3443321
Q ss_pred -ccccCCC--------------C--CCC------------CCch-------------hhhccCCChhHHHHHHHHHHHcc
Q 005344 257 -EIGGDGD--------------V--PHS------------GIGR-------------ARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 -EIa~~~~--------------i--p~~------------~ig~-------------~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
.+++... + ... .+.. .......++|++||++||+++++
T Consensus 76 ~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 155 (234)
T cd03251 76 RQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLK 155 (234)
T ss_pred hhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhc
Confidence 0110000 0 000 0000 00112357799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+|||+++||+.+...+ ...|.++|++||+.+++.. ||+++++.+|++ +..++.
T Consensus 156 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i--~~~~~~ 220 (234)
T cd03251 156 DPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKI--VERGTH 220 (234)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeE--eeeCCH
Confidence 9999999999999999998654 1248999999999999976 999999999998 444444
No 174
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.2e-23 Score=230.83 Aligned_cols=155 Identities=17% Similarity=0.252 Sum_probs=121.4
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEcCCccc
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVDTSNEI 258 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd~~~EI 258 (701)
+++++||+++|+. ..+++++ +.+|++++|+||||||||||||+|+|++.|+.|. +|+++.+....
T Consensus 1 ml~i~~ls~~~~~-----~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~ 75 (530)
T PRK15064 1 MLSTANITMQFGA-----KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFA 75 (530)
T ss_pred CEEEEEEEEEeCC-----cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCc
Confidence 4789999999973 3688988 9999999999999999999999999999998875 24444443211
Q ss_pred ccC---------C---------------CCC----------------------------------CCCCch-h--hhccC
Q 005344 259 GGD---------G---------------DVP----------------------------------HSGIGR-A--RRMQV 277 (701)
Q Consensus 259 a~~---------~---------------~ip----------------------------------~~~ig~-~--rr~~v 277 (701)
... . ..+ ..++.. . ....-
T Consensus 76 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 155 (530)
T PRK15064 76 FEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSE 155 (530)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhh
Confidence 000 0 000 001110 0 11233
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
.|+|||||++||++++.+|++||+||||++||+.++..+ .+.|.+||++||+.+++..+||+++.+.+|++
T Consensus 156 LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i 230 (530)
T PRK15064 156 VAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGEL 230 (530)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEE
Confidence 578999999999999999999999999999999998655 55699999999999999999999999999997
No 175
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.6e-22 Score=206.40 Aligned_cols=162 Identities=17% Similarity=0.261 Sum_probs=120.3
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC---CCCCc--------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA---DDHMK-------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs---p~~Gk-------------- 247 (701)
++++++++++.|+. ..+|+++ +.+|++++|+||||||||||+++|+|++. |+.|+
T Consensus 1 ~~~~~~~l~~~~~~-----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 1 MIAKTTNLNLFYGK-----KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred CceeeeeeEEEECC-----EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 35789999999973 3688888 89999999999999999999999999984 56664
Q ss_pred ----EEEEEcCCcccccC--------C----CC-CCCC-----Cch-hhh--------------ccCCChhHHHHHHHHH
Q 005344 248 ----RVVIVDTSNEIGGD--------G----DV-PHSG-----IGR-ARR--------------MQVPNVNMQHSVMIEA 290 (701)
Q Consensus 248 ----rViiVd~~~EIa~~--------~----~i-p~~~-----ig~-~rr--------------~~v~s~G~qQRV~IAr 290 (701)
.|+++.+...+... . .. .... +.. .+. ..-.++|++||++||+
T Consensus 76 ~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 155 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIAR 155 (246)
T ss_pred HHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHH
Confidence 13333333211000 0 00 0000 000 011 1124779999999999
Q ss_pred HHccCCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 291 VENHMPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 291 AL~~~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+++.+|++||+|||+++||+.++..+ . ..|.|+|++||+.+.+..+||+++++..|++ +..++.
T Consensus 156 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 225 (246)
T PRK14269 156 ALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGEL--IEFGES 225 (246)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEE--EEECCH
Confidence 99999999999999999999988554 1 2489999999999999999999999999998 444444
No 176
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.9e-22 Score=208.96 Aligned_cols=162 Identities=22% Similarity=0.328 Sum_probs=121.0
Q ss_pred ccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-----CCCcEEEEEcCCc-
Q 005344 186 RNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-----DHMKRVVIVDTSN- 256 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-----~~GkrViiVd~~~- 256 (701)
....+++.||+++|+. ..+|+++ |.+|++++|+||||||||||+++|+|++.| +.|. +++++.+
T Consensus 16 ~~~~l~~~nl~~~~~~-----~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~--I~~~g~~i 88 (267)
T PRK14235 16 TEIKMRARDVSVFYGE-----KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGK--ITLDGEDI 88 (267)
T ss_pred CCceEEEEeEEEEECC-----EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceE--EEECCEEC
Confidence 3446889999999973 3588888 899999999999999999999999999974 6665 3333311
Q ss_pred ------------ccccCC----CCC-------------------CC-------------CCch------hhhccCCChhH
Q 005344 257 ------------EIGGDG----DVP-------------------HS-------------GIGR------ARRMQVPNVNM 282 (701)
Q Consensus 257 ------------EIa~~~----~ip-------------------~~-------------~ig~------~rr~~v~s~G~ 282 (701)
.+++.. .++ .. ++.. .....-.|+|+
T Consensus 89 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 168 (267)
T PRK14235 89 YDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQ 168 (267)
T ss_pred cccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHH
Confidence 011000 000 00 0000 00112257799
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 283 QHSVMIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 283 qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||++||++++.+|++||+|||+++||+.++..+ ...+.|+|++||+.+.+..+||+++++..|++ +..++.
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i--~~~g~~ 246 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNL--VEVGDT 246 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEE--EEeCCH
Confidence 9999999999999999999999999999998554 12378999999999999999999999999998 444544
No 177
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.4e-22 Score=204.73 Aligned_cols=152 Identities=18% Similarity=0.282 Sum_probs=115.2
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC------------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT------------ 254 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~------------ 254 (701)
+++.+++++|+. ...+++++ +.+|++++|+||||||||||+++|+|+++|+.|. +.+++
T Consensus 1 l~~~~l~~~~~~----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~--v~~~g~~~~~~~~~~~~ 74 (236)
T cd03253 1 IEFENVTFAYDP----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS--ILIDGQDIREVTLDSLR 74 (236)
T ss_pred CEEEEEEEEeCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCE--EEECCEEhhhCCHHHHH
Confidence 368899999962 23578887 8999999999999999999999999999999885 33433
Q ss_pred --------CcccccC--------CCCCCC-----------CCchh-h------------hccCCChhHHHHHHHHHHHcc
Q 005344 255 --------SNEIGGD--------GDVPHS-----------GIGRA-R------------RMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 255 --------~~EIa~~--------~~ip~~-----------~ig~~-r------------r~~v~s~G~qQRV~IArAL~~ 294 (701)
...+... ...... .+... . .....|+|++||++||+++++
T Consensus 75 ~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~ 154 (236)
T cd03253 75 RAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK 154 (236)
T ss_pred hhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 2111000 000000 00000 0 112357899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+|++||+|||+++||+.+...+ ++ |.++|++||+.+.+.. ||+++.+.+|++.
T Consensus 155 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i~ 214 (236)
T cd03253 155 NPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKIIVLKDGRIV 214 (236)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEEEEEECCEEE
Confidence 9999999999999999998544 33 8999999999999975 9999999999983
No 178
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.3e-22 Score=205.65 Aligned_cols=163 Identities=21% Similarity=0.290 Sum_probs=120.1
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-----CCCc-----------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-----DHMK----------- 247 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-----~~Gk----------- 247 (701)
++++++.|++++|+. ..+|+++ +.+|++++|+|+||||||||+++|+|++.| +.|.
T Consensus 2 ~~~l~~~~l~~~~~~-----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (251)
T PRK14270 2 KIKMESKNLNLWYGE-----KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76 (251)
T ss_pred ccEEEEEEeEEEECC-----eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccc
Confidence 357899999999973 3588888 899999999999999999999999999874 5564
Q ss_pred ---------EEEEEcCCcccccC---C--CC-C-CCCC-ch------------------------hhhccCCChhHHHHH
Q 005344 248 ---------RVVIVDTSNEIGGD---G--DV-P-HSGI-GR------------------------ARRMQVPNVNMQHSV 286 (701)
Q Consensus 248 ---------rViiVd~~~EIa~~---~--~i-p-~~~i-g~------------------------~rr~~v~s~G~qQRV 286 (701)
.++++.+...+... . .+ . ..+. .. .....-.|+|++||+
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 156 (251)
T PRK14270 77 DVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRL 156 (251)
T ss_pred cccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence 12233222110000 0 00 0 0000 00 001123477999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||++++.+|++||+|||+++||+.++..+ . ..+.++|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i--~~~~~~ 230 (251)
T PRK14270 157 CIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDL--IEFNKT 230 (251)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeE--EEeCCH
Confidence 999999999999999999999999988544 1 2368999999999999999999999999998 444554
No 179
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.1e-22 Score=205.67 Aligned_cols=159 Identities=20% Similarity=0.296 Sum_probs=118.7
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-----CCCcEEEEEcCCc----
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-----DHMKRVVIVDTSN---- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-----~~GkrViiVd~~~---- 256 (701)
++++++++++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.+ +.|+ +.+++..
T Consensus 3 ~l~~~~l~~~~~~-----~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~--i~i~g~~~~~~ 75 (250)
T PRK14262 3 IIEIENFSAYYGE-----KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGK--IYFKGQDIYDP 75 (250)
T ss_pred eEEEEeeEEEeCC-----ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceE--EEECCEEcccc
Confidence 6889999999973 3578887 899999999999999999999999999873 5664 3333211
Q ss_pred ---------ccccCCC----CCC------------CCC-----------------ch--------hhhccCCChhHHHHH
Q 005344 257 ---------EIGGDGD----VPH------------SGI-----------------GR--------ARRMQVPNVNMQHSV 286 (701)
Q Consensus 257 ---------EIa~~~~----ip~------------~~i-----------------g~--------~rr~~v~s~G~qQRV 286 (701)
.+++... ++. ... +. .....-.|+|++||+
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 76 QLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred hhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH
Confidence 0110000 000 000 00 001112467999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||++++.+|++||+|||+++||+.++..+ ...+.++|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 229 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL--IEYGPT 229 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEE--EEecCH
Confidence 999999999999999999999999998554 12478999999999999999999999999998 444554
No 180
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.89 E-value=2.2e-22 Score=207.32 Aligned_cols=162 Identities=19% Similarity=0.281 Sum_probs=120.6
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCC---Cc--------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDH---MK-------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~---Gk-------------- 247 (701)
.++++.||++.|+. ..+|+++ +.+|++++|+||||||||||+++|+|++.|+. |.
T Consensus 3 ~~l~~~nl~~~~~~-----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~ 77 (262)
T PRK09984 3 TIIRVEKLAKTFNQ-----HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77 (262)
T ss_pred cEEEEeeEEEEeCC-----eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccccc
Confidence 36899999999973 4688888 89999999999999999999999999998753 43
Q ss_pred ---------EEEEEcCCccccc-C--------C---CCCC----------------------CCCch--hhhccCCChhH
Q 005344 248 ---------RVVIVDTSNEIGG-D--------G---DVPH----------------------SGIGR--ARRMQVPNVNM 282 (701)
Q Consensus 248 ---------rViiVd~~~EIa~-~--------~---~ip~----------------------~~ig~--~rr~~v~s~G~ 282 (701)
+++++.+....-. . . ..+. .++.. .+...-.|+|+
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 157 (262)
T PRK09984 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQ 157 (262)
T ss_pred chhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHH
Confidence 1333333211100 0 0 0000 00000 01112247799
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecC
Q 005344 283 QHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLG 354 (701)
Q Consensus 283 qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lg 354 (701)
+||++||++++.+|++||+||||++||+.++..+ ++ .|.++|++||+.+++..+||+++++.+|++ +..+
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i--~~~g 235 (262)
T PRK09984 158 QQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV--FYDG 235 (262)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeC
Confidence 9999999999999999999999999999998544 33 489999999999999999999999999998 3344
Q ss_pred cH
Q 005344 355 DE 356 (701)
Q Consensus 355 d~ 356 (701)
..
T Consensus 236 ~~ 237 (262)
T PRK09984 236 SS 237 (262)
T ss_pred CH
Confidence 43
No 181
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.89 E-value=9.1e-23 Score=228.57 Aligned_cols=155 Identities=18% Similarity=0.220 Sum_probs=120.3
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
.+++++||+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|+.|. +.+++..
T Consensus 3 ~~i~~~~l~~~~~~-----~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~--i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 3 ALLQLKGIDKAFPG-----VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS--ILYLGKEVTFNGPKS 75 (501)
T ss_pred ceEEEeeeEEEeCC-----eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEECCEECCCCCHHH
Confidence 46899999999973 3688888 8999999999999999999999999999998886 3343310
Q ss_pred ----ccccCC----CCCC----------------CC-Cchh--------------------hhccCCChhHHHHHHHHHH
Q 005344 257 ----EIGGDG----DVPH----------------SG-IGRA--------------------RRMQVPNVNMQHSVMIEAV 291 (701)
Q Consensus 257 ----EIa~~~----~ip~----------------~~-ig~~--------------------rr~~v~s~G~qQRV~IArA 291 (701)
.+++.. .++. .. .... +...-.|+|||||++||++
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 155 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKV 155 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 011100 0000 00 0000 0112247899999999999
Q ss_pred HccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 292 ENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 292 L~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
++.+|++||+||||++||+.++..+ ++.|.+||++||+.+++..+||+++++.+|++.
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~ 220 (501)
T PRK10762 156 LSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFI 220 (501)
T ss_pred HhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999998544 456899999999999999999999999999983
No 182
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.5e-22 Score=208.37 Aligned_cols=153 Identities=20% Similarity=0.241 Sum_probs=113.7
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC-----CCCCc------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA-----DDHMK------------ 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs-----p~~Gk------------ 247 (701)
.++++++|+++|+. ..+|+++ |.+|++++|+|||||||||||++|+|++. |+.|.
T Consensus 12 ~~l~i~nl~~~~~~-----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISYGT-----FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEECC-----EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 36899999999973 3588888 89999999999999999999999999986 46664
Q ss_pred --------EEEEEcCCcccccC---C--CC--CCCCCc---h------hh--------------hccCCChhHHHHHHHH
Q 005344 248 --------RVVIVDTSNEIGGD---G--DV--PHSGIG---R------AR--------------RMQVPNVNMQHSVMIE 289 (701)
Q Consensus 248 --------rViiVd~~~EIa~~---~--~i--p~~~ig---~------~r--------------r~~v~s~G~qQRV~IA 289 (701)
++.++.+...+-.. . .+ ...... . .. ...-.|+||+||++||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la 166 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA 166 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence 12222222110000 0 00 000000 0 00 1112577999999999
Q ss_pred HHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeC
Q 005344 290 AVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILV 345 (701)
Q Consensus 290 rAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~ 345 (701)
++++.+|++||+||||++||+.++..+ ...+.++|++||+.+.+..+||+++++..
T Consensus 167 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 167 RTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 999999999999999999999998554 12478999999999999999999999996
No 183
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=1.2e-22 Score=203.59 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=115.1
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN------- 256 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~------- 256 (701)
+.++++.+++++|+. ..+++++ +.+|++++|+|+||||||||+++|+|++.|+.|+ +.+++..
T Consensus 9 ~~~l~~~~l~~~~~~-----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~--i~~~g~~i~~~~~~ 81 (214)
T PRK13543 9 PPLLAAHALAFSRNE-----EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQ--IQIDGKTATRGDRS 81 (214)
T ss_pred cceEEEeeEEEecCC-----ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCee--EEECCEEccchhhh
Confidence 346899999999973 3588888 9999999999999999999999999999999885 3333311
Q ss_pred -ccccCCC----CCCC----------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEEE
Q 005344 257 -EIGGDGD----VPHS----------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIII 301 (701)
Q Consensus 257 -EIa~~~~----ip~~----------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIIL 301 (701)
.+++... .+.. ++.. .......++|++||++|+++++.+|++||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLL 161 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0111100 0000 0000 001122477999999999999999999999
Q ss_pred cCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEe
Q 005344 302 DEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQIL 344 (701)
Q Consensus 302 DEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~ 344 (701)
|||+++||+.+...+ ++.|.++|++||+.+++..+|++++.+.
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 162 DEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEe
Confidence 999999999998544 4568999999999999999999998875
No 184
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.6e-22 Score=205.37 Aligned_cols=162 Identities=23% Similarity=0.318 Sum_probs=118.5
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC--C---CCCc------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA--D---DHMK------------ 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs--p---~~Gk------------ 247 (701)
..++++|++++|+. ..+|+++ |.+|++++|+|+||||||||+++|+|+++ | +.|.
T Consensus 3 ~~l~~~nl~~~~~~-----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 77 (252)
T PRK14256 3 NKVKLEQLNVHFGK-----NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG 77 (252)
T ss_pred cEEEEEEEEEEeCC-----eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc
Confidence 35789999999973 3588888 89999999999999999999999999985 3 3564
Q ss_pred --------EEEEEcCCccccc-C--------C----C-CCCCCC-ch----hhhc--------------cCCChhHHHHH
Q 005344 248 --------RVVIVDTSNEIGG-D--------G----D-VPHSGI-GR----ARRM--------------QVPNVNMQHSV 286 (701)
Q Consensus 248 --------rViiVd~~~EIa~-~--------~----~-ip~~~i-g~----~rr~--------------~v~s~G~qQRV 286 (701)
.+.++.+....-. . . . ...... .. ...+ .-.|+|++||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl 157 (252)
T PRK14256 78 VDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRL 157 (252)
T ss_pred CChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHH
Confidence 1223332211000 0 0 0 000000 00 0011 12567999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||++++.+|++||+|||+++||+.++..+ ...+.++|++||+.+.+..+||+++++..|++ +..++.
T Consensus 158 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i--~~~~~~ 231 (252)
T PRK14256 158 CIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDL--VECGET 231 (252)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEE--EEeCCH
Confidence 999999999999999999999999988554 12368999999999999999999999999998 434444
No 185
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.7e-22 Score=205.01 Aligned_cols=162 Identities=18% Similarity=0.264 Sum_probs=119.0
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhc---CCC--CCCc------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARM---LAD--DHMK------------ 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGl---Lsp--~~Gk------------ 247 (701)
.++++++++++|+. ..+++++ +.+|++++|+||||||||||+++|+|+ +++ +.|.
T Consensus 2 ~~l~~~~~~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 2 VKIDARDVNFWYGD-----FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG 76 (250)
T ss_pred cEEEEEEEEEEECC-----EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccc
Confidence 46889999999973 3588887 899999999999999999999999997 344 3564
Q ss_pred --------EEEEEcCCcccccC------------CCCCC--------------CCCch------hhhccCCChhHHHHHH
Q 005344 248 --------RVVIVDTSNEIGGD------------GDVPH--------------SGIGR------ARRMQVPNVNMQHSVM 287 (701)
Q Consensus 248 --------rViiVd~~~EIa~~------------~~ip~--------------~~ig~------~rr~~v~s~G~qQRV~ 287 (701)
.+.++.+...+... ..... .++.. .....-.|+||+||++
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 156 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLC 156 (250)
T ss_pred ccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHH
Confidence 12333322111000 00000 00000 0011125779999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||++++.+|++||+||||++||+.++..+ ...|.+||++||+.+.+..+||+++.+.+|++ +..++.
T Consensus 157 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~--~~~~~~ 229 (250)
T PRK14245 157 IARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEM--VEYDDT 229 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEE--EEECCH
Confidence 99999999999999999999999998554 13478999999999999999999999999998 445554
No 186
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=2.1e-22 Score=201.47 Aligned_cols=155 Identities=13% Similarity=0.221 Sum_probs=116.2
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------E
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------R 248 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------r 248 (701)
++++|++++|+.. ...+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ .
T Consensus 3 l~~~~l~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 3 IEFKNVSLRYRPN---LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred EEEEEEEEecCCC---CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 6799999999731 23588888 8999999999999999999999999999999885 1
Q ss_pred EEEEcCCcccccC------C---CCCC---------CCCchh-------------hhccCCChhHHHHHHHHHHHccCCC
Q 005344 249 VVIVDTSNEIGGD------G---DVPH---------SGIGRA-------------RRMQVPNVNMQHSVMIEAVENHMPE 297 (701)
Q Consensus 249 ViiVd~~~EIa~~------~---~ip~---------~~ig~~-------------rr~~v~s~G~qQRV~IArAL~~~Pd 297 (701)
+.++.+...+... . .... .++... ....-.|.||+||++||++++.+|+
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 2233322111000 0 0000 000000 0122357799999999999999999
Q ss_pred EEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 298 TIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 298 VIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+||+|||+++||+.++..+ ...+.++|++||+.+++.. ||+++.+.+|++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~ 215 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRV 215 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeE
Confidence 9999999999999998654 1247899999999999875 999999999998
No 187
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.3e-22 Score=233.45 Aligned_cols=167 Identities=18% Similarity=0.247 Sum_probs=123.8
Q ss_pred ceEEEEeEEEEECccc------ccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------
Q 005344 188 RKMQVIGLTCRVGRAV------AGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v------~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------- 247 (701)
.+++++||++.|+... .+...+|+++ |.+|++++|+|+||||||||+++|+|+++|+.|.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 5799999999996210 0123588888 8999999999999999999999999999998775
Q ss_pred ----------EEEEEcCCcc--cc-cC------------CCC-CC-------------CCCc-h--hhhccCCChhHHHH
Q 005344 248 ----------RVVIVDTSNE--IG-GD------------GDV-PH-------------SGIG-R--ARRMQVPNVNMQHS 285 (701)
Q Consensus 248 ----------rViiVd~~~E--Ia-~~------------~~i-p~-------------~~ig-~--~rr~~v~s~G~qQR 285 (701)
+|.++.+... +. .. ... .. .++. . .+...-.|+|||||
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQR 471 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQR 471 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH
Confidence 1233333210 00 00 000 00 0110 0 01112347899999
Q ss_pred HHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 286 VMIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 286 V~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++||++|+.+|++||+||||++||+..+..+ ++ .|.+||++|||++++..+||++++|..|++ +..++.
T Consensus 472 v~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i--v~~g~~ 548 (623)
T PRK10261 472 ICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI--VEIGPR 548 (623)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEecCH
Confidence 9999999999999999999999999998544 33 489999999999999999999999999998 555555
No 188
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.5e-22 Score=203.44 Aligned_cols=158 Identities=19% Similarity=0.253 Sum_probs=120.0
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------c
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------E 257 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------E 257 (701)
+.+++|+++|+. ..+++++ +.+|++++|+|+||||||||+++|+|++.|+.|. +++++.+ .
T Consensus 1 l~~~~l~~~~~~-----~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~--i~~~g~~~~~~~~~~~~ 73 (232)
T cd03300 1 IELENVSKFYGG-----FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGE--ILLDGKDITNLPPHKRP 73 (232)
T ss_pred CEEEeEEEEeCC-----eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE--EEECCEEcCcCChhhcc
Confidence 368899999973 3588888 8999999999999999999999999999998885 4444321 1
Q ss_pred cccCC----CCCCC-------------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEE
Q 005344 258 IGGDG----DVPHS-------------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETII 300 (701)
Q Consensus 258 Ia~~~----~ip~~-------------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVII 300 (701)
++... .++.. ++.. .....-.|.|++||++||++++.+|++||
T Consensus 74 i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll 153 (232)
T cd03300 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL 153 (232)
T ss_pred eEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11100 00000 0000 00111246799999999999999999999
Q ss_pred EcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 301 IDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 301 LDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|||+++||+.++..+ ++ .|.|+|+++|+..++..+||+++.+.+|++ +..++.
T Consensus 154 lDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~--~~~~~~ 215 (232)
T cd03300 154 LDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKI--QQIGTP 215 (232)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEE--EecCCH
Confidence 9999999999998654 33 389999999999999999999999999998 334443
No 189
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.4e-22 Score=205.26 Aligned_cols=161 Identities=19% Similarity=0.251 Sum_probs=118.3
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC-----CCCCc-------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA-----DDHMK------------- 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs-----p~~Gk------------- 247 (701)
++++++++++|+. ..+|+++ +.+|++++|+|+||||||||+++|+|++. ++.|+
T Consensus 4 ~l~~~~l~~~~~~-----~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 4 IISAKDVHLSYGN-----YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred eEEEEeeEEEECC-----eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 5789999999973 3688887 89999999999999999999999999986 35664
Q ss_pred -------EEEEEcCCcccccC--------C----CCCC--------------CCCc------hhhhccCCChhHHHHHHH
Q 005344 248 -------RVVIVDTSNEIGGD--------G----DVPH--------------SGIG------RARRMQVPNVNMQHSVMI 288 (701)
Q Consensus 248 -------rViiVd~~~EIa~~--------~----~ip~--------------~~ig------~~rr~~v~s~G~qQRV~I 288 (701)
.++++.+...+... . .... .++. ......-.|+|++||++|
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 158 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICI 158 (251)
T ss_pred hHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHH
Confidence 12222222110000 0 0000 0000 000111246799999999
Q ss_pred HHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 289 EAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 289 ArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++++.+|++||+|||+++||+.++..+ ...+.|+|++||+.+.+..+||+++.+.+|++. ..++.
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~--~~~~~ 230 (251)
T PRK14251 159 ARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLI--EAGPT 230 (251)
T ss_pred HHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEE--EeCCH
Confidence 9999999999999999999999998554 124789999999999999999999999999983 34444
No 190
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.5e-22 Score=206.40 Aligned_cols=159 Identities=22% Similarity=0.330 Sum_probs=118.6
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-----CCCcEEEEEcCCc----
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-----DHMKRVVIVDTSN---- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-----~~GkrViiVd~~~---- 256 (701)
.++++|++++|+. ..+|+++ +.+|++++|+|||||||||||++|+|++.| ++|+ +.+++.+
T Consensus 4 ~l~i~~v~~~~~~-----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~--I~~~g~~~~~~ 76 (258)
T PRK14241 4 RIDVKDLNIYYGS-----FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGE--VLLDGEDLYGP 76 (258)
T ss_pred cEEEeeEEEEECC-----EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceE--EEECCEecccc
Confidence 6889999999973 3688888 899999999999999999999999999974 4665 3343311
Q ss_pred ---------ccccC----CCCCCC-------------CC-----------------ch--------hhhccCCChhHHHH
Q 005344 257 ---------EIGGD----GDVPHS-------------GI-----------------GR--------ARRMQVPNVNMQHS 285 (701)
Q Consensus 257 ---------EIa~~----~~ip~~-------------~i-----------------g~--------~rr~~v~s~G~qQR 285 (701)
.++.. ..++.. .. +. .....-.|+|++||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (258)
T PRK14241 77 GVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQR 156 (258)
T ss_pred ccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 01100 000000 00 00 00012257799999
Q ss_pred HHHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEe------CCeEEEEec
Q 005344 286 VMIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQIL------VGGIESVTL 353 (701)
Q Consensus 286 V~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~------~G~I~~V~l 353 (701)
++||++++.+|++||+||||++||+.+...+ ...+.++|++||+.+.+..+||+++++. +|++ +..
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i--~~~ 234 (258)
T PRK14241 157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRL--VEI 234 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceE--Eec
Confidence 9999999999999999999999999988554 1247899999999999999999999997 7888 445
Q ss_pred CcH
Q 005344 354 GDE 356 (701)
Q Consensus 354 gd~ 356 (701)
++.
T Consensus 235 ~~~ 237 (258)
T PRK14241 235 DDT 237 (258)
T ss_pred CCH
Confidence 554
No 191
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.1e-22 Score=204.34 Aligned_cols=162 Identities=20% Similarity=0.222 Sum_probs=118.9
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcC--CC---CCCc------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARML--AD---DHMK------------ 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlL--sp---~~Gk------------ 247 (701)
.++++++|+++|+. ..+++++ +.+|++++|+||||||||||+++|+|++ .| +.|+
T Consensus 4 ~~l~~~~l~~~~~~-----~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 4 PILQVSDLSVYYNK-----KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred ceEEEEeeEEEECC-----eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 46899999999973 3588888 8999999999999999999999999985 35 3564
Q ss_pred --------EEEEEcCCcccccC------------CCCCCC--------------CCc----h--hhhccCCChhHHHHHH
Q 005344 248 --------RVVIVDTSNEIGGD------------GDVPHS--------------GIG----R--ARRMQVPNVNMQHSVM 287 (701)
Q Consensus 248 --------rViiVd~~~EIa~~------------~~ip~~--------------~ig----~--~rr~~v~s~G~qQRV~ 287 (701)
.+.++.+...+... ...... ++. . .....-.|+|++||++
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVC 158 (252)
T ss_pred cchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHH
Confidence 12333332111000 000000 000 0 0011225779999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||++++.+|++||+|||+++||+.++..+ ...+.|+|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 231 (252)
T PRK14239 159 IARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDL--IEYNDT 231 (252)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 99999999999999999999999998554 12368999999999999999999999999998 444544
No 192
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.8e-22 Score=204.71 Aligned_cols=161 Identities=22% Similarity=0.281 Sum_probs=119.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC-----CCc-------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADD-----HMK------------- 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~-----~Gk------------- 247 (701)
+++++||+++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|. .|.
T Consensus 4 ~l~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T PRK14272 4 LLSAQDVNIYYGD-----KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV 78 (252)
T ss_pred EEEEeeeEEEECC-----EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc
Confidence 5789999999973 3688888 8999999999999999999999999998764 454
Q ss_pred -------EEEEEcCCccccc-C------------CCCCCC------------CCc------h--hhhccCCChhHHHHHH
Q 005344 248 -------RVVIVDTSNEIGG-D------------GDVPHS------------GIG------R--ARRMQVPNVNMQHSVM 287 (701)
Q Consensus 248 -------rViiVd~~~EIa~-~------------~~ip~~------------~ig------~--~rr~~v~s~G~qQRV~ 287 (701)
.++++.+...... . ...... .++ . .......|+|++||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14272 79 DPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLC 158 (252)
T ss_pred CHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHH
Confidence 1223332211000 0 000000 000 0 0011225779999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||++++.+|++||+|||+++||+.++..+ ...+.++|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 159 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~ 231 (252)
T PRK14272 159 IARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDL--VEHGPT 231 (252)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 99999999999999999999999998554 12479999999999999999999999999998 444544
No 193
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.89 E-value=1.5e-22 Score=204.38 Aligned_cols=150 Identities=15% Similarity=0.306 Sum_probs=113.4
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN------- 256 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~------- 256 (701)
+.+++++||++.|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +.+++..
T Consensus 5 ~~~i~~~~l~~~~~~-----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~ 77 (225)
T PRK10247 5 SPLLQLQNVGYLAGD-----AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGT--LLFEGEDISTLKPE 77 (225)
T ss_pred CceEEEeccEEeeCC-----ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCe--EEECCEEcCcCCHH
Confidence 346899999999973 3588888 8999999999999999999999999999999885 3344321
Q ss_pred ----ccccCCC----CC---------------C-------------CCCch---hhhccCCChhHHHHHHHHHHHccCCC
Q 005344 257 ----EIGGDGD----VP---------------H-------------SGIGR---ARRMQVPNVNMQHSVMIEAVENHMPE 297 (701)
Q Consensus 257 ----EIa~~~~----ip---------------~-------------~~ig~---~rr~~v~s~G~qQRV~IArAL~~~Pd 297 (701)
.+++... ++ . .++.. .......|+|++||++||++++.+|+
T Consensus 78 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (225)
T PRK10247 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPK 157 (225)
T ss_pred HHHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 0110000 00 0 00100 00111246799999999999999999
Q ss_pred EEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEe
Q 005344 298 TIIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQIL 344 (701)
Q Consensus 298 VIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~ 344 (701)
+||+||||++||+.++..+ . +.|.++|++||+.+++. .||+++.+.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~ 211 (225)
T PRK10247 158 VLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQ 211 (225)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEe
Confidence 9999999999999998644 2 34899999999999986 699999985
No 194
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.1e-22 Score=228.21 Aligned_cols=162 Identities=15% Similarity=0.183 Sum_probs=122.9
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
.+++++||+++|+. ..+++++ +.+|++++|+||||||||||||+|+|++.|+.|.
T Consensus 4 ~~l~~~~l~~~~~~-----~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 78 (510)
T PRK09700 4 PYISMAGIGKSFGP-----VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA 78 (510)
T ss_pred ceEEEeeeEEEcCC-----eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHH
Confidence 46899999999973 3688888 8999999999999999999999999999998875
Q ss_pred --EEEEEcCCccccc---------CCCCCC---CCC---ch--------------------hhhccCCChhHHHHHHHHH
Q 005344 248 --RVVIVDTSNEIGG---------DGDVPH---SGI---GR--------------------ARRMQVPNVNMQHSVMIEA 290 (701)
Q Consensus 248 --rViiVd~~~EIa~---------~~~ip~---~~i---g~--------------------~rr~~v~s~G~qQRV~IAr 290 (701)
.|+++.+...+.. ....+. .+. .. .+...-.|+|||||++||+
T Consensus 79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~ 158 (510)
T PRK09700 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAK 158 (510)
T ss_pred HCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHH
Confidence 1333333211100 000000 000 00 0011225789999999999
Q ss_pred HHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 291 VENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 291 AL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+++.+|++||+||||++||+.++..+ ++.|.|||++||+.+.+..+||+++++.+|++ +..++.
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i--~~~g~~ 229 (510)
T PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSS--VCSGMV 229 (510)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE--eeecch
Confidence 99999999999999999999998554 45699999999999999999999999999998 444444
No 195
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.89 E-value=1.9e-22 Score=202.49 Aligned_cols=153 Identities=21% Similarity=0.324 Sum_probs=113.3
Q ss_pred eEEEEeEEEEECccccc--ccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC----c---
Q 005344 189 KMQVIGLTCRVGRAVAG--SAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS----N--- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G--~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~----~--- 256 (701)
+++++||+++|+....+ ...+++++ +.+|++++|+||||||||||+++|+|++.|+.|. +.++.. +
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~--i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGR--ILVRHEGAWVDLAQ 78 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe--EEEecCCCccchhh
Confidence 37899999999631111 13588888 8999999999999999999999999999998886 444411 0
Q ss_pred ------------ccccCC----CCCC-------------CCCch----------hh-----------hccCCChhHHHHH
Q 005344 257 ------------EIGGDG----DVPH-------------SGIGR----------AR-----------RMQVPNVNMQHSV 286 (701)
Q Consensus 257 ------------EIa~~~----~ip~-------------~~ig~----------~r-----------r~~v~s~G~qQRV 286 (701)
.+++.. ..+. .+... .. ...-.|+|++||+
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 158 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV 158 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence 011100 0000 00000 00 1112467999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI 343 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl 343 (701)
+||++++.+|++||+||||++||+.++..+ ++.|.|+|++||+.+++..+||+++.+
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999998554 345999999999999999999998765
No 196
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=1.2e-22 Score=201.47 Aligned_cols=157 Identities=11% Similarity=0.119 Sum_probs=115.7
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcE-----EEEEcCCcccc--
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR-----VVIVDTSNEIG-- 259 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gkr-----ViiVd~~~EIa-- 259 (701)
++++||+++|+........+++++ +.+|++++|+||||||||||+++|+|++.|+.|.- |.++.+...+.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999973100002588888 99999999999999999999999999999998862 45555543211
Q ss_pred -------cCCCCCC---------CCCch-------------hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccH
Q 005344 260 -------GDGDVPH---------SGIGR-------------ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEA 310 (701)
Q Consensus 260 -------~~~~ip~---------~~ig~-------------~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~ 310 (701)
....... .++.. .......+.|++||++||++++.+|++||+|||+++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 0000000 00000 001123578999999999999999999999999999999
Q ss_pred HHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCe
Q 005344 311 LAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 311 ~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~ 347 (701)
...+.+ .+.|.++|++||+...+.. ||+++.+.+|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 886422 2347999999999999987 99999998874
No 197
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.4e-22 Score=204.08 Aligned_cols=161 Identities=24% Similarity=0.317 Sum_probs=118.0
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-----CCCc-------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-----DHMK------------- 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-----~~Gk------------- 247 (701)
.+++.||++.|+. ..+++++ +.+|++++|+||||||||||+++|+|++.+ +.|+
T Consensus 3 ~l~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYGD-----FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEECC-----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4789999999973 3588888 899999999999999999999999998752 4564
Q ss_pred -------EEEEEcCCcccccCC-----CC-C-CCCC-c--h----------------------hhhccCCChhHHHHHHH
Q 005344 248 -------RVVIVDTSNEIGGDG-----DV-P-HSGI-G--R----------------------ARRMQVPNVNMQHSVMI 288 (701)
Q Consensus 248 -------rViiVd~~~EIa~~~-----~i-p-~~~i-g--~----------------------~rr~~v~s~G~qQRV~I 288 (701)
.++++.+........ .+ . ..+. . . .....-.|+|++||++|
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCI 157 (250)
T ss_pred chHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHH
Confidence 122332221100000 00 0 0000 0 0 00112257799999999
Q ss_pred HHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 289 EAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 289 ArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++++++|++||+|||+++||+.++..+ ...|.|+|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 158 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i--~~~~~~ 229 (250)
T PRK14240 158 ARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEI--VEFGDT 229 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEE--EEeCCH
Confidence 9999999999999999999999998544 13478999999999999999999999999998 434444
No 198
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.7e-22 Score=204.16 Aligned_cols=161 Identities=20% Similarity=0.261 Sum_probs=119.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC-----CCc-------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADD-----HMK------------- 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~-----~Gk------------- 247 (701)
.+++++|+++|+. ..+++++ |.+|++++|+||||||||||+++|+|++.|+ .|.
T Consensus 4 ~l~~~~l~~~~~~-----~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 4 KIKIRGVNFFYHK-----HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred eEEEEEEEEEECC-----eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 5789999999973 3588888 8999999999999999999999999999886 354
Q ss_pred -------EEEEEcCCcccccC--------C----CCCCC--------------CCc------hhhhccCCChhHHHHHHH
Q 005344 248 -------RVVIVDTSNEIGGD--------G----DVPHS--------------GIG------RARRMQVPNVNMQHSVMI 288 (701)
Q Consensus 248 -------rViiVd~~~EIa~~--------~----~ip~~--------------~ig------~~rr~~v~s~G~qQRV~I 288 (701)
.++++.+...+... . ..... ++. ..+...-.|+|++||++|
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 158 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI 158 (251)
T ss_pred ChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 12333332111000 0 00000 000 000111257799999999
Q ss_pred HHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 289 EAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 289 ArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++++.+|++||+|||+++||+.++..+ ...|.|||++||+.+.+..+||+++++..|++ +..++.
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i--~~~~~~ 230 (251)
T PRK14249 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDL--VEYGRT 230 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeE--EEeCCH
Confidence 9999999999999999999999988544 13589999999999999999999999999998 444544
No 199
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=1.8e-22 Score=205.02 Aligned_cols=162 Identities=20% Similarity=0.311 Sum_probs=127.2
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccc-----
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIG----- 259 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa----- 259 (701)
.++++++|+..||. ..+|+++ +.+|++++|+|+||+|||||||+|+|+.++.+|+ +.+++.+-..
T Consensus 2 ~mL~v~~l~~~YG~-----~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~--I~~~G~dit~~p~~~ 74 (237)
T COG0410 2 PMLEVENLSAGYGK-----IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGR--IIFDGEDITGLPPHE 74 (237)
T ss_pred CceeEEeEeecccc-----eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCee--EEECCeecCCCCHHH
Confidence 47899999999994 5899998 8999999999999999999999999999998886 4454432110
Q ss_pred ----cCCCCCC-------C--------------C-------Cch------------hhhccCCChhHHHHHHHHHHHccC
Q 005344 260 ----GDGDVPH-------S--------------G-------IGR------------ARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 260 ----~~~~ip~-------~--------------~-------ig~------------~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
+...+|+ . . +.. .++-...|+|+||.++|+|||+.+
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 0001111 0 0 000 011234688999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 296 PETIIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
|++|++|||+.||-|.-.+++ + +.|+||+++-++...+..++|+.++|..|+| +..|..++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Gri--v~~G~~~e 223 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRI--VLSGTAAE 223 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEE--EEecCHHH
Confidence 999999999999999887544 4 4488999999999999999999999999999 66776543
No 200
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.2e-22 Score=200.48 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=116.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC---CCCCcEEEEEcCCcc-----
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA---DDHMKRVVIVDTSNE----- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs---p~~GkrViiVd~~~E----- 257 (701)
.+.++||++.|+.. .+...+++++ +.+|++++|+||||||||||+++|+|++. |++|. +.+++.+-
T Consensus 3 ~~~~~~~~~~~~~~-~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~--i~i~g~~~~~~~~ 79 (202)
T cd03233 3 TLSWRNISFTTGKG-RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGD--IHYNGIPYKEFAE 79 (202)
T ss_pred eEEEEccEEEeccC-CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceE--EEECCEECccchh
Confidence 35789999999753 2345688888 89999999999999999999999999998 77886 44544310
Q ss_pred -----cccCC----CCCCCCCch----------hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--
Q 005344 258 -----IGGDG----DVPHSGIGR----------ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-- 316 (701)
Q Consensus 258 -----Ia~~~----~ip~~~ig~----------~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-- 316 (701)
+++.. .++...+.. .....-.+.|++||++||++++++|++||+|||+++||+.+++.+
T Consensus 80 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~ 159 (202)
T cd03233 80 KYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK 159 (202)
T ss_pred hhcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHH
Confidence 11110 111111100 112233578999999999999999999999999999999998554
Q ss_pred -----Hhc-CCEEEEE-EcChhHHHHhcCcEEEEeCCeE
Q 005344 317 -----AQR-GVQLVGT-AHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 317 -----~e~-GvtVIiT-THd~~l~~~l~drvlvl~~G~I 348 (701)
.+. +.++|++ +|+.+.+..+||+++++.+|++
T Consensus 160 ~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i 198 (202)
T cd03233 160 CIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQ 198 (202)
T ss_pred HHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEE
Confidence 233 6666655 5666888889999999999998
No 201
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.5e-22 Score=227.03 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=119.7
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC--CCCc---------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD--DHMK--------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp--~~Gk--------------- 247 (701)
.+++++||+++|+. ..+|+++ +.+|++++|+||||||||||+|+|+|++.| ++|.
T Consensus 4 ~~l~~~nl~~~~~~-----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 4 YLLEMKNITKTFGG-----VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred ceEEEeeeEEEeCC-----eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH
Confidence 46899999999973 3688988 899999999999999999999999999986 5665
Q ss_pred ----EEEEEcCCccccc-C--------CCCCC-CC-Cch--------------------hhhccCCChhHHHHHHHHHHH
Q 005344 248 ----RVVIVDTSNEIGG-D--------GDVPH-SG-IGR--------------------ARRMQVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 248 ----rViiVd~~~EIa~-~--------~~ip~-~~-ig~--------------------~rr~~v~s~G~qQRV~IArAL 292 (701)
.++++.+...+.. . ..... .. ... .+...-.|+|||||++||+++
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al 158 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKAL 158 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence 1333333211100 0 00000 00 000 001122478999999999999
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 293 NHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+++|++||+||||++||+.++..+ ++.|.++|++||+.+.+..+||+++++.+|++.
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~ 222 (506)
T PRK13549 159 NKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222 (506)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEe
Confidence 999999999999999999998554 456899999999999999999999999999983
No 202
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.8e-22 Score=206.64 Aligned_cols=162 Identities=16% Similarity=0.264 Sum_probs=119.9
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC-----CCCCc------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA-----DDHMK------------ 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs-----p~~Gk------------ 247 (701)
.+++++||+++|+. ..+|+++ +.+|++++|+|||||||||||++|+|++. |+.|+
T Consensus 19 ~~l~~~nl~~~~~~-----~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 19 IALSTKDLHVYYGK-----KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred eEEEEeeEEEEECC-----eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 36889999999972 4688888 89999999999999999999999999986 35664
Q ss_pred --------EEEEEcCCcccccC-------CCCCCCCC-ch----h------hh--------------ccCCChhHHHHHH
Q 005344 248 --------RVVIVDTSNEIGGD-------GDVPHSGI-GR----A------RR--------------MQVPNVNMQHSVM 287 (701)
Q Consensus 248 --------rViiVd~~~EIa~~-------~~ip~~~i-g~----~------rr--------------~~v~s~G~qQRV~ 287 (701)
.++++.+...+... ......+. .. . .. ..-.|+|++||++
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~ 173 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC 173 (267)
T ss_pred CChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence 12222222110000 00000000 00 0 01 1124679999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||++++.+|++||+|||+++||+.+...+ ...+.++|++||+.+.+..+||+++++..|++ +..++.
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 246 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDL--IEYDKT 246 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEE--EEeCCH
Confidence 99999999999999999999999988554 23478999999999999999999999999998 445555
No 203
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.9e-22 Score=207.98 Aligned_cols=156 Identities=17% Similarity=0.228 Sum_probs=117.5
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
.++++.|++++|+. +...+++++ +.+|++++|+||||||||||+++|+|++.|+.|. +.+++..
T Consensus 6 ~~l~~~nl~~~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~--I~~~g~~i~~~~~~~ 80 (271)
T PRK13632 6 VMIKVENVSFSYPN---SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE--IKIDGITISKENLKE 80 (271)
T ss_pred eEEEEEeEEEEcCC---CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce--EEECCEecCcCCHHH
Confidence 46899999999962 124588888 8999999999999999999999999999998885 3333311
Q ss_pred ---ccccCC-----CCCCC-------------CCch--------------------hhhccCCChhHHHHHHHHHHHccC
Q 005344 257 ---EIGGDG-----DVPHS-------------GIGR--------------------ARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 257 ---EIa~~~-----~ip~~-------------~ig~--------------------~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
.+++.. .++.. .... .....-.|+||+||++||++++.+
T Consensus 81 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 160 (271)
T PRK13632 81 IRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALN 160 (271)
T ss_pred HhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 011100 00000 0000 001122477999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------Hhc-CCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 296 PETIIIDEIGTELEALAASTI-------AQR-GVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~e~-GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
|++||+|||+++||+.++..+ ++. |.++|++||+.+.+. +||+++++.+|++.
T Consensus 161 p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~ 221 (271)
T PRK13632 161 PEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLI 221 (271)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEE
Confidence 999999999999999988544 333 599999999999886 79999999999983
No 204
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.89 E-value=3.1e-22 Score=203.50 Aligned_cols=158 Identities=20% Similarity=0.265 Sum_probs=119.8
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------c
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------E 257 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------E 257 (701)
+++++++++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +.+++.+ .
T Consensus 1 i~i~~l~~~~~~-----~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~--i~i~g~~~~~~~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGS-----FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGR--IRLNGQDATRVHARDRK 73 (237)
T ss_pred CEEEEEEEEECC-----eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE--EEECCEEcCcCChhhcC
Confidence 468999999973 3688888 8999999999999999999999999999998885 3443321 0
Q ss_pred cccCC----CCCCC-------------CCch----------hhhc----------cCCChhHHHHHHHHHHHccCCCEEE
Q 005344 258 IGGDG----DVPHS-------------GIGR----------ARRM----------QVPNVNMQHSVMIEAVENHMPETII 300 (701)
Q Consensus 258 Ia~~~----~ip~~-------------~ig~----------~rr~----------~v~s~G~qQRV~IArAL~~~PdVII 300 (701)
+++.. .++.. .... ...+ .-.|.||+||++|+++++.+|+++|
T Consensus 74 i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll 153 (237)
T TIGR00968 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLL 153 (237)
T ss_pred EEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11000 00000 0000 0011 1246799999999999999999999
Q ss_pred EcCCCCcccHHHHHHH-------Hhc-CCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 301 IDEIGTELEALAASTI-------AQR-GVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 301 LDEPtsgLD~~a~~~l-------~e~-GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|||+++||+.+...+ ++. |.++|++||+.+.+..+||+++.+..|++ +..++.
T Consensus 154 lDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i--~~~~~~ 215 (237)
T TIGR00968 154 LDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKI--EQIGSP 215 (237)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEE--EEecCH
Confidence 9999999999998554 333 89999999999999999999999999998 444443
No 205
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3.4e-22 Score=202.99 Aligned_cols=157 Identities=22% Similarity=0.353 Sum_probs=118.7
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------c
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------E 257 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------E 257 (701)
|++.+++++|+. .+++++ +.+|++++|+|+||||||||+++|+|++.|+.|. +++++.+ .
T Consensus 1 l~~~~l~~~~~~------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~--v~i~g~~~~~~~~~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGK--ILLNGKDITNLPPEKRD 72 (235)
T ss_pred CeeEeEEEEeCC------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceE--EEECCEEcCcCChhHcC
Confidence 368899999973 268887 8999999999999999999999999999999885 3333311 0
Q ss_pred cccC----CCCCCC-------------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEE
Q 005344 258 IGGD----GDVPHS-------------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETII 300 (701)
Q Consensus 258 Ia~~----~~ip~~-------------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVII 300 (701)
++.. ..++.. ++.. .+...-.++|++||++||++++.+|++++
T Consensus 73 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 152 (235)
T cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILL 152 (235)
T ss_pred EEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 1100 000000 0000 00111247799999999999999999999
Q ss_pred EcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 301 IDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 301 LDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|||+++||+.++..+ .. .|.++|++||+..++..+||+++++..|++ +..++.
T Consensus 153 lDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i--~~~~~~ 214 (235)
T cd03299 153 LDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKL--IQVGKP 214 (235)
T ss_pred ECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEecCH
Confidence 9999999999998554 22 389999999999999999999999999998 444444
No 206
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=2.3e-22 Score=199.85 Aligned_cols=148 Identities=20% Similarity=0.236 Sum_probs=111.6
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
++++.+++++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +++++.+
T Consensus 1 ~l~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~--v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 1 MLEARNLACERDE-----RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGE--VLWQGEPIRRQRDEYH 73 (204)
T ss_pred CeEEEEEEEEECC-----EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEECCEEcccchHHhh
Confidence 4789999999973 3588888 8999999999999999999999999999999886 4444321
Q ss_pred -ccccC----CCCCCC----------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEEE
Q 005344 257 -EIGGD----GDVPHS----------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIII 301 (701)
Q Consensus 257 -EIa~~----~~ip~~----------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIIL 301 (701)
.+++. ...+.. ++.. .....-.|+|++||++||++++++|++||+
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 153 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWIL 153 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 01100 000000 0000 001122477999999999999999999999
Q ss_pred cCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 005344 302 DEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI 343 (701)
Q Consensus 302 DEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl 343 (701)
||||++||+.++..+ ++.|.++|++||+..+++.+..+++.+
T Consensus 154 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 154 DEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999998554 345899999999999998876666554
No 207
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2e-22 Score=231.88 Aligned_cols=163 Identities=18% Similarity=0.237 Sum_probs=122.5
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcE----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR---------------- 248 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gkr---------------- 248 (701)
.++++++|+++|+.. .+...+++++ +.+|++++|+|+||||||||+|+|+|++.|+.|..
T Consensus 11 ~~l~v~~l~~~y~~~-~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 11 DVLAVENLNIAFMQE-QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred ceEEEeceEEEecCC-CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 468999999999632 1224689988 89999999999999999999999999999877651
Q ss_pred ----------------EEEEcCCcccccCCCCCC--------------------------------CCCch-----hhhc
Q 005344 249 ----------------VVIVDTSNEIGGDGDVPH--------------------------------SGIGR-----ARRM 275 (701)
Q Consensus 249 ----------------ViiVd~~~EIa~~~~ip~--------------------------------~~ig~-----~rr~ 275 (701)
|+++.+.... ...+. .++.. .+..
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~---~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 166 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMT---SLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP 166 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchh---hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC
Confidence 2222221100 00010 01100 0011
Q ss_pred cCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCe
Q 005344 276 QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 276 ~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~ 347 (701)
.-.|+|||||++||+|++.+|++||+||||++||+..+..+ . +.|.+||++||+.+.+..+||++++|.+|+
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 22478999999999999999999999999999999997544 3 349999999999999999999999999999
Q ss_pred EEEEecCcH
Q 005344 348 IESVTLGDE 356 (701)
Q Consensus 348 I~~V~lgd~ 356 (701)
+ +..+..
T Consensus 247 i--~~~g~~ 253 (623)
T PRK10261 247 A--VETGSV 253 (623)
T ss_pred e--cccCCH
Confidence 8 444544
No 208
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.89 E-value=2.4e-22 Score=201.98 Aligned_cols=159 Identities=16% Similarity=0.209 Sum_probs=116.6
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc----------------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK---------------- 247 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk---------------- 247 (701)
..++++.+++++|+.. +...+++++ +.+|++++|+||||||||||+++|+|++.|+.|.
T Consensus 9 ~~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 9 KGIVKFQNVTFAYPTR--PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CceEEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 3468899999999731 113578888 8999999999999999999999999999998885
Q ss_pred --EEEEEcCCccccc--------CCCCCC--------------------C--CCch--hhhccCCChhHHHHHHHHHHHc
Q 005344 248 --RVVIVDTSNEIGG--------DGDVPH--------------------S--GIGR--ARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 248 --rViiVd~~~EIa~--------~~~ip~--------------------~--~ig~--~rr~~v~s~G~qQRV~IArAL~ 293 (701)
.++++.+...+.. ...... . ++.. .......|+|++||++||++++
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 1233332211100 000000 0 0000 0011224779999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 294 HMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
.+|++||+|||+++||+.++..+ ...+.|+|++||+.+++.. ||+++.+.+|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 99999999999999999998654 1246899999999999965 999999998863
No 209
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.89 E-value=3.5e-22 Score=207.18 Aligned_cols=159 Identities=17% Similarity=0.237 Sum_probs=118.9
Q ss_pred eEEEEeEEEEECcc----cccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-----
Q 005344 189 KMQVIGLTCRVGRA----VAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN----- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~----v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~----- 256 (701)
+++++||++.|+.. ..+...+++++ +.+|++++|+||||||||||+++|+|++.|++|+ +.+++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~--i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGN--VSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEECCEeccccC
Confidence 58899999999720 00024688888 8999999999999999999999999999998885 3444321
Q ss_pred ---------ccccCCC-----C-CCC--------------------------------CCc-h--hhhccCCChhHHHHH
Q 005344 257 ---------EIGGDGD-----V-PHS--------------------------------GIG-R--ARRMQVPNVNMQHSV 286 (701)
Q Consensus 257 ---------EIa~~~~-----i-p~~--------------------------------~ig-~--~rr~~v~s~G~qQRV 286 (701)
.+++... + +.. ++. . .......|+|++||+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl 160 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV 160 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH
Confidence 0110000 0 000 000 0 001112467999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+||++++++|++||+|||+++||+.++..+ ++ .|.++|++||+.+.+..+||+++.+.+|++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999877443 33 4899999999999999999999999999983
No 210
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.4e-22 Score=203.11 Aligned_cols=161 Identities=21% Similarity=0.271 Sum_probs=118.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-----CCCc-------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-----DHMK------------- 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-----~~Gk------------- 247 (701)
++++.+++++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.+ +.|.
T Consensus 3 ~l~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFYGE-----NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEECC-----eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 5789999999973 3588888 899999999999999999999999999985 3554
Q ss_pred ------EEEEEcCCcccccC--------C----CCCCC--------------CCc----h--hhhccCCChhHHHHHHHH
Q 005344 248 ------RVVIVDTSNEIGGD--------G----DVPHS--------------GIG----R--ARRMQVPNVNMQHSVMIE 289 (701)
Q Consensus 248 ------rViiVd~~~EIa~~--------~----~ip~~--------------~ig----~--~rr~~v~s~G~qQRV~IA 289 (701)
.++++.+....-.. . ..... ++. . .....-.|+|++||++||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 157 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIA 157 (249)
T ss_pred hHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHH
Confidence 12233222110000 0 00000 000 0 001112467999999999
Q ss_pred HHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 290 AVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 290 rAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++++.+|++||+|||+++||+.++..+ ..++.|+|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 158 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i--~~~g~~ 228 (249)
T PRK14253 158 RTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGEL--VEHDDT 228 (249)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 999999999999999999999998554 12368999999999999999999999999998 444544
No 211
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.2e-22 Score=208.40 Aligned_cols=161 Identities=20% Similarity=0.270 Sum_probs=120.7
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
++++++|+++|+.. ....+++++ +.+|++++|+|+||||||||+++|+|++.|++|+ +++++..
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~--i~~~g~~i~~~~~~~~ 79 (277)
T PRK13642 4 ILEVENLVFKYEKE--SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK--VKIDGELLTAENVWNL 79 (277)
T ss_pred eEEEEEEEEEcCCC--CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCE--EEECCEECCcCCHHHH
Confidence 68899999999731 122478888 8999999999999999999999999999999885 3443311
Q ss_pred --ccccCCC-----CCCC-------------CCch------------------h--hhccCCChhHHHHHHHHHHHccCC
Q 005344 257 --EIGGDGD-----VPHS-------------GIGR------------------A--RRMQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 257 --EIa~~~~-----ip~~-------------~ig~------------------~--rr~~v~s~G~qQRV~IArAL~~~P 296 (701)
.+++... ++.. +... . ....-.|+|++||++||++++.+|
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p 159 (277)
T PRK13642 80 RRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159 (277)
T ss_pred hcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 0110000 0000 0000 0 011225789999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 297 ETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++||+|||+++||+.++..+ .+ .|.|+|++||+.+.+. .||+++++..|++ +..++.
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i--~~~g~~ 224 (277)
T PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEI--IKEAAP 224 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEE--EEeCCH
Confidence 99999999999999998554 33 3999999999999987 5999999999998 444554
No 212
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.89 E-value=3.1e-22 Score=215.96 Aligned_cols=152 Identities=22% Similarity=0.299 Sum_probs=113.7
Q ss_pred eEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------------
Q 005344 194 GLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------------- 256 (701)
Q Consensus 194 nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------------- 256 (701)
+|+++|+.. . + ++ +.+|++++|+|||||||||||++|+|++.|+.|+ +.+++..
T Consensus 4 ~l~~~~~~~-----~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~--I~~~g~~i~~~~~~~~~~~~~ 74 (354)
T TIGR02142 4 RFSKRLGDF-----S-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGE--IVLNGRTLFDSRKGIFLPPEK 74 (354)
T ss_pred EEEEEECCE-----E-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCEECccCccccccchhh
Confidence 789999742 2 3 55 8999999999999999999999999999998886 4443321
Q ss_pred -ccccC----CCCCCCCC------c-------h--------hhhc----------cCCChhHHHHHHHHHHHccCCCEEE
Q 005344 257 -EIGGD----GDVPHSGI------G-------R--------ARRM----------QVPNVNMQHSVMIEAVENHMPETII 300 (701)
Q Consensus 257 -EIa~~----~~ip~~~i------g-------~--------~rr~----------~v~s~G~qQRV~IArAL~~~PdVII 300 (701)
.+++. ..+++..+ + . ...+ .-.|+|||||++||++++.+|++||
T Consensus 75 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll 154 (354)
T TIGR02142 75 RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL 154 (354)
T ss_pred CCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 01110 01111000 0 0 0011 1247799999999999999999999
Q ss_pred EcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 301 IDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 301 LDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|||+++||+.++..+ ++ .|.++|++||+.+++..+||+++++.+|++. ..++.
T Consensus 155 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~--~~g~~ 216 (354)
T TIGR02142 155 MDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVA--AAGPI 216 (354)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE--EECCH
Confidence 9999999999998544 33 3899999999999999999999999999984 34544
No 213
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.9e-23 Score=204.53 Aligned_cols=161 Identities=20% Similarity=0.348 Sum_probs=131.6
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------- 257 (701)
|+++++++++|+. ..+|+++ +.+|+++.||||||+||||||-+++++++.++|. +.+++.+-
T Consensus 1 MI~i~nv~K~y~~-----~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~--i~i~g~~~~~~~s~~L 73 (252)
T COG4604 1 MITIENVSKSYGT-----KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE--ITIDGLELTSTPSKEL 73 (252)
T ss_pred CeeehhhhHhhCC-----EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCce--EEEeeeecccCChHHH
Confidence 5789999999984 4789998 8999999999999999999999999999999998 77776521
Q ss_pred ---------------------cccCCCCCCCC--Cc--------h-----------hhhccCCChhHHHHHHHHHHHccC
Q 005344 258 ---------------------IGGDGDVPHSG--IG--------R-----------ARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 258 ---------------------Ia~~~~ip~~~--ig--------~-----------~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
+.+.+.+|+.. +. . .+.+.-+|+|++||+.+|++++++
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQd 153 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQD 153 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeecc
Confidence 11224444421 00 0 012334688999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 296 PETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
.|++++|||.++||......+ .+-|.|++++.||.+++..++|.++.+.+|++ +..|.++.
T Consensus 154 TdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~v--v~~G~~~e 222 (252)
T COG4604 154 TDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKV--VKQGSPDE 222 (252)
T ss_pred CcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEE--EecCCHHH
Confidence 999999999999999877333 56799999999999999999999999999999 77787744
No 214
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.89 E-value=1.3e-22 Score=200.76 Aligned_cols=144 Identities=19% Similarity=0.287 Sum_probs=107.2
Q ss_pred EEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc------------
Q 005344 192 VIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN------------ 256 (701)
Q Consensus 192 I~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~------------ 256 (701)
++||++.|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +.+++.+
T Consensus 1 i~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~~~~ 73 (206)
T TIGR03608 1 LKNISKKFGD-----KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQ--VYLNGKETPPLNSKKASKF 73 (206)
T ss_pred CcceEEEECC-----EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeE--EEECCEEccccchhhHHHH
Confidence 4688999973 3588888 8999999999999999999999999999999886 4444322
Q ss_pred ---ccccC----CCCCCC-------------------------------CCch--hhhccCCChhHHHHHHHHHHHccCC
Q 005344 257 ---EIGGD----GDVPHS-------------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 257 ---EIa~~----~~ip~~-------------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~P 296 (701)
.+++. ..++.. ++.. .+...-.|+|++||++||++++.+|
T Consensus 74 ~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p 153 (206)
T TIGR03608 74 RREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDP 153 (206)
T ss_pred HHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 01110 000100 0000 0011124679999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 005344 297 ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI 343 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl 343 (701)
++||+|||+++||+.++..+ .+.|.++|++||+..... +||+++.+
T Consensus 154 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 154 PLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEeC
Confidence 99999999999999998554 345899999999999764 79988753
No 215
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.89 E-value=3.3e-22 Score=224.89 Aligned_cols=165 Identities=22% Similarity=0.273 Sum_probs=122.8
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEc-CC--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVD-TS-------- 255 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd-~~-------- 255 (701)
.++++++|+++|+....+...+|+++ +.+|++++|+||||||||||+++|+|+++|+.|+ +.++ +.
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~--i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGE--VNVRVGDEWVDMTKP 355 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE--EEEecCCcccccccc
Confidence 36899999999952101223588888 8999999999999999999999999999998886 4442 10
Q ss_pred ---------cccccC----CCCCCC------------------------------CCch-------hhhccCCChhHHHH
Q 005344 256 ---------NEIGGD----GDVPHS------------------------------GIGR-------ARRMQVPNVNMQHS 285 (701)
Q Consensus 256 ---------~EIa~~----~~ip~~------------------------------~ig~-------~rr~~v~s~G~qQR 285 (701)
..+++. ..++.. ++.. .+...-.|+|||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 011111 000000 0000 00111246799999
Q ss_pred HHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 286 VMIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 286 V~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++||++++.+|++||+||||++||+.++..+ ++ .|.+||++||+.+++..+||+++++.+|++ +..+..
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i--~~~g~~ 512 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI--VKIGDP 512 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCH
Confidence 9999999999999999999999999998554 23 489999999999999999999999999998 434444
No 216
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=2.5e-22 Score=228.05 Aligned_cols=159 Identities=18% Similarity=0.163 Sum_probs=123.8
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEcCCc
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVDTSN 256 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd~~~ 256 (701)
..+++++||+++|+. ...+|+++ |.+|++++|+|||||||||||++|+|++.|+.|. +|+++.+..
T Consensus 4 ~~~l~i~~l~~~y~~----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~ 79 (556)
T PRK11819 4 QYIYTMNRVSKVVPP----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEP 79 (556)
T ss_pred cEEEEEeeEEEEeCC----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCC
Confidence 457999999999972 23689998 9999999999999999999999999999998875 355665543
Q ss_pred ccccC---------CC------------------CCC-----------------------------------CCCc-hhh
Q 005344 257 EIGGD---------GD------------------VPH-----------------------------------SGIG-RAR 273 (701)
Q Consensus 257 EIa~~---------~~------------------ip~-----------------------------------~~ig-~~r 273 (701)
.+... .. .+. .++. ..+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 159 (556)
T PRK11819 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDA 159 (556)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccC
Confidence 21000 00 000 0000 001
Q ss_pred hccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 274 r~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
...-.|+|||||++||++++.+|++||+||||++||+.+...+ .+.+.+||++||+.+++..+||+++.+.+|++.
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 1223578999999999999999999999999999999998655 444569999999999999999999999999973
No 217
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.7e-22 Score=205.27 Aligned_cols=163 Identities=18% Similarity=0.253 Sum_probs=120.4
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc----------------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK---------------- 247 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk---------------- 247 (701)
.+++++++++++|++ ..+++++ +.+|++++|+|+||||||||+++|+|++.|+.|.
T Consensus 8 ~~~i~~~~~~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~ 82 (257)
T PRK14246 8 EDVFNISRLYLYIND-----KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ 82 (257)
T ss_pred hhheeeeeEEEecCC-----ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCccccc
Confidence 356889999999984 4688888 8899999999999999999999999999988753
Q ss_pred --------EEEEEcCCcccc-cCC-----CC--CCCCC-ch----------hhhc--------------cCCChhHHHHH
Q 005344 248 --------RVVIVDTSNEIG-GDG-----DV--PHSGI-GR----------ARRM--------------QVPNVNMQHSV 286 (701)
Q Consensus 248 --------rViiVd~~~EIa-~~~-----~i--p~~~i-g~----------~rr~--------------~v~s~G~qQRV 286 (701)
.+.++.+...+- ... .+ ...+. .. .+.+ .-.+.|++||+
T Consensus 83 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl 162 (257)
T PRK14246 83 IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRL 162 (257)
T ss_pred CCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHH
Confidence 112222211100 000 00 00000 00 0011 12467999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||++++.+|++||+||||++||+.+...+ ...+.|+|++||+...+..+||+++++..|++ +..++.
T Consensus 163 ~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i--~~~g~~ 236 (257)
T PRK14246 163 TIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGEL--VEWGSS 236 (257)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEE--EEECCH
Confidence 999999999999999999999999998554 12469999999999999999999999999998 444444
No 218
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.89 E-value=7.3e-22 Score=205.32 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=121.2
Q ss_pred eEEEEeEEEEECcc---------------cccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEE
Q 005344 189 KMQVIGLTCRVGRA---------------VAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVV 250 (701)
Q Consensus 189 ~IeI~nLs~rygr~---------------v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrVi 250 (701)
.+++.||++.|.-. ..+...+++++ +.+|++++|+||||||||||+++|+|+++|+.|. +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~--I 81 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGK--V 81 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceE--E
Confidence 46788888777431 11334577877 8999999999999999999999999999999886 3
Q ss_pred EEcCC-------ccccc-C------------CCCCCC-------------CCchh--hhccCCChhHHHHHHHHHHHccC
Q 005344 251 IVDTS-------NEIGG-D------------GDVPHS-------------GIGRA--RRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 251 iVd~~-------~EIa~-~------------~~ip~~-------------~ig~~--rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
.+++. ..+.. . ...... +++.. ......|+||+||++||++++.+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~ 161 (264)
T PRK13546 82 DRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVN 161 (264)
T ss_pred EECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhC
Confidence 44332 10100 0 000000 00000 01123578999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 296 PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
|++||+|||+++||+.++..+ ++.|.++|++||+...+..+||+++.+.+|++ +..++.+
T Consensus 162 p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i--~~~g~~~ 228 (264)
T PRK13546 162 PDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKL--KDYGELD 228 (264)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEE--EEeCCHH
Confidence 999999999999999876433 45699999999999999999999999999998 4455543
No 219
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.89 E-value=3.6e-22 Score=203.82 Aligned_cols=159 Identities=20% Similarity=0.231 Sum_probs=118.8
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhc--CCCCCCcEEEEEcC---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARM--LADDHMKRVVIVDT--------- 254 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGl--Lsp~~GkrViiVd~--------- 254 (701)
++++++|+++|+. ..+|+++ +.+|++++|+|+||||||||+++|+|+ +.|+.|. +++++
T Consensus 7 ~l~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~--i~~~g~~~~~~~~~ 79 (252)
T CHL00131 7 ILEIKNLHASVNE-----NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGD--ILFKGESILDLEPE 79 (252)
T ss_pred eEEEEeEEEEeCC-----EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCce--EEECCEEcccCChh
Confidence 5899999999973 3588887 899999999999999999999999998 4677774 33322
Q ss_pred ------------Cccc-cc----------CC------CCCC----------------CCCch---hhhcc-CCChhHHHH
Q 005344 255 ------------SNEI-GG----------DG------DVPH----------------SGIGR---ARRMQ-VPNVNMQHS 285 (701)
Q Consensus 255 ------------~~EI-a~----------~~------~ip~----------------~~ig~---~rr~~-v~s~G~qQR 285 (701)
.... .. .. .... .++.. .+... -.|+|++||
T Consensus 80 ~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 159 (252)
T CHL00131 80 ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKR 159 (252)
T ss_pred hhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHH
Confidence 1100 00 00 0000 00000 00111 267899999
Q ss_pred HHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHh-cCcEEEEeCCeEEEEecCcH
Q 005344 286 VMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIV-KNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 286 V~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l-~drvlvl~~G~I~~V~lgd~ 356 (701)
++||++++++|++||+||||++||+.++..+ .+.|.|||++||+.+++..+ ||+++++..|++ +..++.
T Consensus 160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i--~~~~~~ 236 (252)
T CHL00131 160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKI--IKTGDA 236 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEE--EEecCh
Confidence 9999999999999999999999999998544 34589999999999999877 899999999998 444544
No 220
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=3.3e-22 Score=199.47 Aligned_cols=147 Identities=21% Similarity=0.252 Sum_probs=110.6
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
+++++++|++.|+. ..+++++ |.+|++++|+||||||||||+++|+|++.++.|. +.+++..
T Consensus 1 m~l~~~~l~~~~~~-----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 1 MMLEGEDLACVRGG-----RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT--IKLDGGDIDDPDVAE 73 (207)
T ss_pred CEEEEEeEEEEECC-----eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEECCEeCcchhhHh
Confidence 36899999999973 3578888 8999999999999999999999999999999886 4444421
Q ss_pred ccccCC----CCCCC---------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcC
Q 005344 257 EIGGDG----DVPHS---------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303 (701)
Q Consensus 257 EIa~~~----~ip~~---------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDE 303 (701)
.+++.. ..+.. ++.. .....-.|+|++||++||++++.+|++||+||
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 153 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDE 153 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 011110 00000 0000 00111247799999999999999999999999
Q ss_pred CCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 005344 304 IGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI 343 (701)
Q Consensus 304 PtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl 343 (701)
||++||+.+...+ ++.|.++|++||+.+++.. |.++.+
T Consensus 154 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~ 198 (207)
T PRK13539 154 PTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDL 198 (207)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEee
Confidence 9999999998544 4469999999999998875 777655
No 221
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.88 E-value=2.9e-22 Score=225.90 Aligned_cols=161 Identities=18% Similarity=0.253 Sum_probs=121.0
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-----CCCc------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-----DHMK------------ 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-----~~Gk------------ 247 (701)
.++++.+|+++|+.. .+...+|+++ +.+|++++|+||||||||||+|+|+|+++| ++|.
T Consensus 4 ~~l~~~~l~~~~~~~-~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 4 PLLAIENLSVAFRQQ-QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred ceEEEeceEEEecCC-CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 468999999999631 0124689998 899999999999999999999999999986 4553
Q ss_pred ----------EEEEEcCCcccccC----------------CCCCC-------------CCCch-----hhhccCCChhHH
Q 005344 248 ----------RVVIVDTSNEIGGD----------------GDVPH-------------SGIGR-----ARRMQVPNVNMQ 283 (701)
Q Consensus 248 ----------rViiVd~~~EIa~~----------------~~ip~-------------~~ig~-----~rr~~v~s~G~q 283 (701)
+++++.+....... ...+. .++.. .+...-.|+|||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 24444443210000 00000 01100 011223578999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 284 HSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 284 QRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
||++||++++++|++||+||||++||+.++..+ ++ .|.|||++||+.+.+..+||+++++.+|++.
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999998554 23 4899999999999999999999999999983
No 222
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.9e-22 Score=202.05 Aligned_cols=162 Identities=19% Similarity=0.259 Sum_probs=118.9
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC--C---CCCc------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA--D---DHMK------------ 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs--p---~~Gk------------ 247 (701)
.++++.+|+++|+. ..+++++ +.+|++++|+|+||||||||+++|+|++. | +.|.
T Consensus 4 ~~l~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGK-----FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEECC-----eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence 46889999999983 3688888 89999999999999999999999999864 4 2453
Q ss_pred --------EEEEEcCCcccccC------------CCCCCC--------------CC----ch--hhhccCCChhHHHHHH
Q 005344 248 --------RVVIVDTSNEIGGD------------GDVPHS--------------GI----GR--ARRMQVPNVNMQHSVM 287 (701)
Q Consensus 248 --------rViiVd~~~EIa~~------------~~ip~~--------------~i----g~--~rr~~v~s~G~qQRV~ 287 (701)
.++++.+....-.. ...... ++ .. .....-.|+||+||++
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred ccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence 13333332110000 000000 00 00 0011224679999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||++++.+|++||+||||++||+.++..+ ...+.|+|++||+.+.+..+||+++.+..|++ +..++.
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i--~~~~~~ 231 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNL--IEFADT 231 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 99999999999999999999999998554 12368999999999999999999999999998 444544
No 223
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.6e-22 Score=191.36 Aligned_cols=146 Identities=19% Similarity=0.317 Sum_probs=114.2
Q ss_pred EEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCC
Q 005344 192 VIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSG 268 (701)
Q Consensus 192 I~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ 268 (701)
++++++.|.. ..+++++ +.+|++++|+|+||||||||+++|+|++.++.|+ +.+++.+-...........
T Consensus 2 ~~~~~~~~~~-----~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~--i~~~~~~~~~~~~~~~~~~ 74 (157)
T cd00267 2 IENLSFRYGG-----RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE--ILIDGKDIAKLPLEELRRR 74 (157)
T ss_pred eEEEEEEeCC-----eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccE--EEECCEEcccCCHHHHHhc
Confidence 5788999873 2577777 8999999999999999999999999999998887 6777642110000000000
Q ss_pred CchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEE
Q 005344 269 IGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSL 341 (701)
Q Consensus 269 ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvl 341 (701)
++. ..+ .+.|+++|++|+++++.+|+++|+|||+++||..++..+ .+.|.++|++||+.+.+..+||+++
T Consensus 75 i~~--~~q-lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~ 151 (157)
T cd00267 75 IGY--VPQ-LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVI 151 (157)
T ss_pred eEE--Eee-CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 110 011 789999999999999999999999999999999988554 3346899999999999999999999
Q ss_pred EEeCCe
Q 005344 342 QILVGG 347 (701)
Q Consensus 342 vl~~G~ 347 (701)
.+..|+
T Consensus 152 ~l~~g~ 157 (157)
T cd00267 152 VLKDGK 157 (157)
T ss_pred EEeCcC
Confidence 998763
No 224
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=7.3e-22 Score=205.98 Aligned_cols=164 Identities=18% Similarity=0.249 Sum_probs=120.8
Q ss_pred ccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-----CCCc----------
Q 005344 186 RNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-----DHMK---------- 247 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-----~~Gk---------- 247 (701)
+.+.+++++|+++|+. ..+++++ +.+|++++|+|+||||||||+++|+|++.| +.|.
T Consensus 18 ~~~~l~i~nl~~~~~~-----~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 18 AAPAMAAVNLTLGFAG-----KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFN 92 (276)
T ss_pred cCcEEEEeeEEEEECC-----EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccc
Confidence 4557899999999983 3688888 899999999999999999999999999985 4564
Q ss_pred ---------EEEEEcCCcccccC--------C----C-CCC-------------CCCch------hhhccCCChhHHHHH
Q 005344 248 ---------RVVIVDTSNEIGGD--------G----D-VPH-------------SGIGR------ARRMQVPNVNMQHSV 286 (701)
Q Consensus 248 ---------rViiVd~~~EIa~~--------~----~-ip~-------------~~ig~------~rr~~v~s~G~qQRV 286 (701)
.+.++.+...+... . . ... .++.. .....-.|+|++||+
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred cchhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 12223222110000 0 0 000 00000 000112567999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||++++++|++||+||||++||+.++..+ . ..+.|||++||+.+++..+||+++++.+|++ +..++.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i--~~~g~~ 246 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRL--VEEGPT 246 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 999999999999999999999999998554 1 2358999999999999999999999999998 444554
No 225
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.6e-22 Score=206.04 Aligned_cols=163 Identities=18% Similarity=0.261 Sum_probs=120.6
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC-----CCCCc-----------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA-----DDHMK----------- 247 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs-----p~~Gk----------- 247 (701)
..++++++|+++|+. ..+|+++ +.+|++++|+|+||||||||+++|+|++. |+.|+
T Consensus 22 ~~~l~~~~l~~~~~~-----~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 96 (271)
T PRK14238 22 KVVFDTQNLNLWYGE-----DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96 (271)
T ss_pred ceEEEEeeeEEEECC-----cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc
Confidence 346899999999973 3578888 89999999999999999999999999987 46664
Q ss_pred ---------EEEEEcCCcccccC---CCC----CCCCCch-------------------------hhhccCCChhHHHHH
Q 005344 248 ---------RVVIVDTSNEIGGD---GDV----PHSGIGR-------------------------ARRMQVPNVNMQHSV 286 (701)
Q Consensus 248 ---------rViiVd~~~EIa~~---~~i----p~~~ig~-------------------------~rr~~v~s~G~qQRV 286 (701)
.++++.+...+-.. ..+ ...+... .....-.|+|++||+
T Consensus 97 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 97 SYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred cccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 12233322111000 000 0000000 001112577999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||++++.+|++||+|||+++||+.+...+ ...+.++|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i--~~~g~~ 250 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYV--NEYDDT 250 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 999999999999999999999999998654 12379999999999999999999999999998 444554
No 226
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.4e-22 Score=207.26 Aligned_cols=162 Identities=19% Similarity=0.233 Sum_probs=119.1
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-----CCCc------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-----DHMK------------ 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-----~~Gk------------ 247 (701)
.++++.+|+++|+. ..+|+++ +.+|++++|+||||||||||+++|+|++.+ +.|+
T Consensus 19 ~~l~~~nl~~~~~~-----~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 19 SVFEVEGVKVFYGG-----FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred ceEEEeeEEEEeCC-----eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 36889999999973 3588888 899999999999999999999999999853 3554
Q ss_pred --------EEEEEcCCcccccC--------C----CCC-C-----------CCC----ch--hhhccCCChhHHHHHHHH
Q 005344 248 --------RVVIVDTSNEIGGD--------G----DVP-H-----------SGI----GR--ARRMQVPNVNMQHSVMIE 289 (701)
Q Consensus 248 --------rViiVd~~~EIa~~--------~----~ip-~-----------~~i----g~--~rr~~v~s~G~qQRV~IA 289 (701)
++.++.+...+... . ... . .++ .. .....-.++|++||++||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred chhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 12333332111000 0 000 0 000 00 001112477999999999
Q ss_pred HHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEe---------CCeEEEEecC
Q 005344 290 AVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQIL---------VGGIESVTLG 354 (701)
Q Consensus 290 rAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~---------~G~I~~V~lg 354 (701)
++++.+|++||+||||++||+.++..+ ...+.+||++||+.+.+..+||+++++. +|++ +..+
T Consensus 174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~--~~~g 251 (274)
T PRK14265 174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL--VEFS 251 (274)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE--EEeC
Confidence 999999999999999999999998654 1237899999999999999999999997 7888 5455
Q ss_pred cH
Q 005344 355 DE 356 (701)
Q Consensus 355 d~ 356 (701)
+.
T Consensus 252 ~~ 253 (274)
T PRK14265 252 PT 253 (274)
T ss_pred CH
Confidence 55
No 227
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.4e-22 Score=207.39 Aligned_cols=162 Identities=20% Similarity=0.282 Sum_probs=119.9
Q ss_pred ccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC-----CCCCcEEEEEcCCc-
Q 005344 186 RNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA-----DDHMKRVVIVDTSN- 256 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs-----p~~GkrViiVd~~~- 256 (701)
.+..+++++|+++|+. ..+|+++ |.+|++++|+||||||||||+++|+|++. |+.|. +.+++.+
T Consensus 36 ~~~~l~~~~l~~~~~~-----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~--I~~~g~~i 108 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE-----FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGA--LMFDGEDI 108 (286)
T ss_pred CceEEEEeeeEEEECC-----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceE--EEECCEEh
Confidence 5557899999999973 3588888 89999999999999999999999999864 36664 3333211
Q ss_pred ------------ccccCCCCCC----------------CCCc----------h---------------hhhccCCChhHH
Q 005344 257 ------------EIGGDGDVPH----------------SGIG----------R---------------ARRMQVPNVNMQ 283 (701)
Q Consensus 257 ------------EIa~~~~ip~----------------~~ig----------~---------------~rr~~v~s~G~q 283 (701)
.+++...-+. .+.. . .......|+||+
T Consensus 109 ~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 109 YGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ 188 (286)
T ss_pred hhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHH
Confidence 0111000000 0000 0 001122577999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 284 HSVMIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 284 QRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||++||++++.+|++||+|||+++||+.+...+ ...+.+||++||+.+++..+||+++++.+|++ +..++.
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i--~~~g~~ 265 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVL--VEHAPT 265 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 999999999999999999999999999998554 12368999999999999999999999999998 444544
No 228
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.2e-22 Score=224.17 Aligned_cols=157 Identities=18% Similarity=0.224 Sum_probs=120.3
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
.++++++|+++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|.
T Consensus 3 ~~l~~~~l~~~~~~-----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (501)
T PRK11288 3 PYLSFDGIGKTFPG-----VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAAL 77 (501)
T ss_pred ceEEEeeeEEEECC-----EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHH
Confidence 36899999999973 3588888 8999999999999999999999999999998885
Q ss_pred --EEEEEcCCccccc-C--------CCCCC-CC-Cch--------------------hhhccCCChhHHHHHHHHHHHcc
Q 005344 248 --RVVIVDTSNEIGG-D--------GDVPH-SG-IGR--------------------ARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 --rViiVd~~~EIa~-~--------~~ip~-~~-ig~--------------------~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
.|+++.+...+.. . ..... .+ +.. .+...-.|+|||||++||++++.
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~ 157 (501)
T PRK11288 78 AAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALAR 157 (501)
T ss_pred hCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHh
Confidence 1223332211000 0 00000 00 000 00112257899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+|++||+||||++||+.++..+ ++.|.++|++||+.+++..+||+++++.+|++.
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 158 NARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV 219 (501)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999998554 356899999999999999999999999999984
No 229
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.88 E-value=6.7e-22 Score=206.29 Aligned_cols=161 Identities=20% Similarity=0.274 Sum_probs=119.3
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC--------CCc----------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADD--------HMK---------- 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~--------~Gk---------- 247 (701)
+++++||+++|+. ..+|+++ |.+|++++|+||||||||||+++|+|++.|+ .|.
T Consensus 1 ml~~~nl~~~~~~-----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~ 75 (272)
T PRK13547 1 MLTADHLHVARRH-----RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75 (272)
T ss_pred CeEEEEEEEEECC-----EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEccc
Confidence 3789999999973 3688888 8999999999999999999999999999887 664
Q ss_pred --------EEEEEcCCccccc---------CCCCCCC---C-Cch-----h--------------hhccCCChhHHHHHH
Q 005344 248 --------RVVIVDTSNEIGG---------DGDVPHS---G-IGR-----A--------------RRMQVPNVNMQHSVM 287 (701)
Q Consensus 248 --------rViiVd~~~EIa~---------~~~ip~~---~-ig~-----~--------------rr~~v~s~G~qQRV~ 287 (701)
.++++.+...... ....+.. . ... . +...-.|+|++||++
T Consensus 76 ~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 155 (272)
T PRK13547 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQ 155 (272)
T ss_pred CCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHH
Confidence 1222322211000 0000000 0 000 0 011124779999999
Q ss_pred HHHHHcc---------CCCEEEEcCCCCcccHHHHHHH-------Hhc-CCEEEEEEcChhHHHHhcCcEEEEeCCeEEE
Q 005344 288 IEAVENH---------MPETIIIDEIGTELEALAASTI-------AQR-GVQLVGTAHGMTIDNIVKNPSLQILVGGIES 350 (701)
Q Consensus 288 IArAL~~---------~PdVIILDEPtsgLD~~a~~~l-------~e~-GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~ 350 (701)
||+++++ +|++||+||||++||+.++..+ .+. |.++|++||+.+.+..+||+++++.+|++
T Consensus 156 laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i-- 233 (272)
T PRK13547 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAI-- 233 (272)
T ss_pred HHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeE--
Confidence 9999994 9999999999999999998554 333 89999999999999999999999999998
Q ss_pred EecCcH
Q 005344 351 VTLGDE 356 (701)
Q Consensus 351 V~lgd~ 356 (701)
+..++.
T Consensus 234 ~~~g~~ 239 (272)
T PRK13547 234 VAHGAP 239 (272)
T ss_pred EEecCH
Confidence 444444
No 230
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.5e-22 Score=231.76 Aligned_cols=157 Identities=13% Similarity=0.157 Sum_probs=121.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEcCCc-c
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVDTSN-E 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd~~~-E 257 (701)
+|.+.||+++|+. ..+|+++ |.+|++++|+||||||||||||+|+|++.|+.|. ++.++.+.. .
T Consensus 1 ~i~i~nls~~~g~-----~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~ 75 (638)
T PRK10636 1 MIVFSSLQIRRGV-----RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA 75 (638)
T ss_pred CEEEEEEEEEeCC-----ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC
Confidence 4789999999983 4689998 9999999999999999999999999999999886 233343311 0
Q ss_pred -----cccC-CC--------------------------------CC-------------CCCCc-h--hhhccCCChhHH
Q 005344 258 -----IGGD-GD--------------------------------VP-------------HSGIG-R--ARRMQVPNVNMQ 283 (701)
Q Consensus 258 -----Ia~~-~~--------------------------------ip-------------~~~ig-~--~rr~~v~s~G~q 283 (701)
+... .. .. ..++. . .+...-.|+|+|
T Consensus 76 ~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGer 155 (638)
T PRK10636 76 LPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWR 155 (638)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHH
Confidence 0000 00 00 00010 0 011223578999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEE
Q 005344 284 HSVMIEAVENHMPETIIIDEIGTELEALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIES 350 (701)
Q Consensus 284 QRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~ 350 (701)
||++||++|+.+|++|||||||++||+.+...+ .+.+.+||++||+..++..+||+++.+.+|++..
T Consensus 156 qRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 156 MRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 999999999999999999999999999998655 4557899999999999999999999999999853
No 231
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.88 E-value=3.8e-22 Score=198.18 Aligned_cols=147 Identities=22% Similarity=0.250 Sum_probs=111.2
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
+++++|+++|+. ..+++++ +.+|++++|+|+||||||||+++|+|++.|+.|+ +.+++..
T Consensus 1 l~i~~l~~~~~~-----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~~ 73 (201)
T cd03231 1 LEADELTCERDG-----RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGR--VLLNGGPLDFQRDSIAR 73 (201)
T ss_pred CEEEEEEEEeCC-----ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEECCEecccccHHhhh
Confidence 468999999973 3678888 8999999999999999999999999999999886 3444321
Q ss_pred ccccCC----CCCCC-------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCC
Q 005344 257 EIGGDG----DVPHS-------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305 (701)
Q Consensus 257 EIa~~~----~ip~~-------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPt 305 (701)
.+++.. ..+.. ++.. .......|+|++||++||++++.+|++||+||||
T Consensus 74 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 153 (201)
T cd03231 74 GLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153 (201)
T ss_pred heEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 011000 00000 0000 0011224779999999999999999999999999
Q ss_pred CcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 005344 306 TELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI 343 (701)
Q Consensus 306 sgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl 343 (701)
++||+.+...+ ++.|.++|++||+......++++++.+
T Consensus 154 ~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 154 TALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999998554 345899999999998888899988765
No 232
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=7e-22 Score=204.37 Aligned_cols=159 Identities=21% Similarity=0.249 Sum_probs=117.4
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC-----CCCCcEEEEEcCCc----
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA-----DDHMKRVVIVDTSN---- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs-----p~~GkrViiVd~~~---- 256 (701)
++++++|+++|+. ..+++++ +.+|++++|+|+||||||||+++|+|++. ++.|. +.+++.+
T Consensus 10 ~l~i~~v~~~~~~-----~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~--i~~~g~~i~~~ 82 (264)
T PRK14243 10 VLRTENLNVYYGS-----FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGK--VTFHGKNLYAP 82 (264)
T ss_pred EEEEeeeEEEECC-----EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceE--EEECCEEcccc
Confidence 6889999999973 3688888 89999999999999999999999999975 25564 3333211
Q ss_pred ---------ccccCC----CCCC------------CCCc--h---h----h--------------hccCCChhHHHHHHH
Q 005344 257 ---------EIGGDG----DVPH------------SGIG--R---A----R--------------RMQVPNVNMQHSVMI 288 (701)
Q Consensus 257 ---------EIa~~~----~ip~------------~~ig--~---~----r--------------r~~v~s~G~qQRV~I 288 (701)
.++... .++. .... . . . ...-.|+|++||++|
T Consensus 83 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 83 DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCI 162 (264)
T ss_pred ccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHH
Confidence 010000 0000 0000 0 0 0 111257799999999
Q ss_pred HHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEe---------CCeEEEEec
Q 005344 289 EAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQIL---------VGGIESVTL 353 (701)
Q Consensus 289 ArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~---------~G~I~~V~l 353 (701)
|++++.+|++||+|||+++||+.++..+ ...+.+||++||+.+.+..+||+++++. .|++ +..
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i--~~~ 240 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL--VEF 240 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE--EEe
Confidence 9999999999999999999999998554 1236899999999999999999999998 6887 444
Q ss_pred CcH
Q 005344 354 GDE 356 (701)
Q Consensus 354 gd~ 356 (701)
+..
T Consensus 241 ~~~ 243 (264)
T PRK14243 241 DRT 243 (264)
T ss_pred CCH
Confidence 444
No 233
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=4.4e-23 Score=205.77 Aligned_cols=162 Identities=22% Similarity=0.312 Sum_probs=131.9
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccc------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEI------ 258 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EI------ 258 (701)
..+.+.+|.|+|++ ..+++++ +.+||+++|+||||+||||.+.++.|+++|++|+ +++++.+-.
T Consensus 3 ~~L~a~~l~K~y~k-----r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~--i~ld~~diT~lPm~~ 75 (243)
T COG1137 3 STLVAENLAKSYKK-----RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK--ILLDDEDITKLPMHK 75 (243)
T ss_pred cEEEehhhhHhhCC-----eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCce--EEECCcccccCChHH
Confidence 35788999999984 5789998 8999999999999999999999999999999998 777775321
Q ss_pred ---ccCCCCCCC----------------------CCc---hh-------hhc----------cCCChhHHHHHHHHHHHc
Q 005344 259 ---GGDGDVPHS----------------------GIG---RA-------RRM----------QVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 259 ---a~~~~ip~~----------------------~ig---~~-------rr~----------~v~s~G~qQRV~IArAL~ 293 (701)
.+.+.+||. +.. .. ..+ ...|+|+++|+.|||||+
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHh
Confidence 122344441 000 00 001 124789999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 294 HMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
.+|++|++|||++|.||.+...+ +++|+.|++|-|+..+.-.+||+.+++..|++ ...|+++.
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~v--la~G~p~e 225 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKV--LAEGSPEE 225 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeE--EecCCHHH
Confidence 99999999999999999998544 78899999999999999999999999999999 66777743
No 234
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=8.3e-22 Score=203.30 Aligned_cols=159 Identities=18% Similarity=0.230 Sum_probs=119.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC-----CCcEEEEEcCCc----
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADD-----HMKRVVIVDTSN---- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~-----~GkrViiVd~~~---- 256 (701)
.++++|++++|+. ..+|+++ +.+|++++|+|+||||||||+++|+|+++++ .|+ +.+++.+
T Consensus 7 ~l~~~nl~~~~~~-----~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~--i~~~g~~i~~~ 79 (261)
T PRK14258 7 AIKVNNLSFYYDT-----QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGR--VEFFNQNIYER 79 (261)
T ss_pred eEEEeeEEEEeCC-----eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccce--EEECCEEhhcc
Confidence 5789999999973 2588888 9999999999999999999999999999875 453 2332211
Q ss_pred ---------ccccC----CCCCC------------CCC-ch------------------------hhhccCCChhHHHHH
Q 005344 257 ---------EIGGD----GDVPH------------SGI-GR------------------------ARRMQVPNVNMQHSV 286 (701)
Q Consensus 257 ---------EIa~~----~~ip~------------~~i-g~------------------------~rr~~v~s~G~qQRV 286 (701)
.+++. ..++. .+. .. .......|+||+||+
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 159 (261)
T PRK14258 80 RVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRL 159 (261)
T ss_pred ccchHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH
Confidence 00000 00000 000 00 001123577999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeC-----CeEEEEec
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILV-----GGIESVTL 353 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~-----G~I~~V~l 353 (701)
+||++++.+|++||+|||+++||+.+...+ +. .|.|+|++||+..++..+||+++++.+ |++ +..
T Consensus 160 ~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i--~~~ 237 (261)
T PRK14258 160 CIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQL--VEF 237 (261)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceE--EEe
Confidence 999999999999999999999999988544 22 489999999999999999999999998 988 545
Q ss_pred CcH
Q 005344 354 GDE 356 (701)
Q Consensus 354 gd~ 356 (701)
++.
T Consensus 238 ~~~ 240 (261)
T PRK14258 238 GLT 240 (261)
T ss_pred CCH
Confidence 555
No 235
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.5e-22 Score=224.44 Aligned_cols=156 Identities=17% Similarity=0.252 Sum_probs=122.5
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEcCCcc
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVDTSNE 257 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd~~~E 257 (701)
.++++.||+++|+. ..+++++ +.+|++++|+|||||||||||++|+|++.|+.|. +++++++...
T Consensus 318 ~~l~~~~l~~~~~~-----~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~ 392 (530)
T PRK15064 318 NALEVENLTKGFDN-----GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHA 392 (530)
T ss_pred ceEEEEeeEEeeCC-----ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccc
Confidence 47999999999973 3588888 9999999999999999999999999999998874 3556665421
Q ss_pred --ccc-C------CCC--CC------------CCCc-h--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHH
Q 005344 258 --IGG-D------GDV--PH------------SGIG-R--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEAL 311 (701)
Q Consensus 258 --Ia~-~------~~i--p~------------~~ig-~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~ 311 (701)
+.. . ... .. .++. . .+...-.|+|||||++||++++.+|++||+||||++||+.
T Consensus 393 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~ 472 (530)
T PRK15064 393 YDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDME 472 (530)
T ss_pred ccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 100 0 000 00 0110 0 0112235789999999999999999999999999999999
Q ss_pred HHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 312 AASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 312 a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+...+ .+.+.+||++||+.+++..+||+++++.+|++
T Consensus 473 ~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i 513 (530)
T PRK15064 473 SIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGV 513 (530)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 98655 44466999999999999999999999999998
No 236
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=2.2e-22 Score=198.10 Aligned_cols=159 Identities=25% Similarity=0.322 Sum_probs=124.7
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccccc----
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGG---- 260 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~---- 260 (701)
..+++.+|.++|| ..++|+++ ..+|+++.|||.+|||||||||||.-+..|+.|. +.+.+. ||..
T Consensus 5 ~~l~v~dlHK~~G-----~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~--I~v~ge-ei~~k~~~ 76 (256)
T COG4598 5 NALEVEDLHKRYG-----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGS--IRVNGE-EIRLKRDK 76 (256)
T ss_pred cceehhHHHhhcc-----cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCce--EEECCe-EEEeeeCC
Confidence 3578999999998 45899998 6789999999999999999999999999999886 444443 1100
Q ss_pred ---------------------C----CCCCCC--------------C----------------Cchhhhc----cCCChh
Q 005344 261 ---------------------D----GDVPHS--------------G----------------IGRARRM----QVPNVN 281 (701)
Q Consensus 261 ---------------------~----~~ip~~--------------~----------------ig~~rr~----~v~s~G 281 (701)
. ....|+ + +|.+.+. ...++|
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGG 156 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGG 156 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCch
Confidence 0 000000 0 0111011 124789
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCCCcccHHHH-------HHHHhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecC
Q 005344 282 MQHSVMIEAVENHMPETIIIDEIGTELEALAA-------STIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLG 354 (701)
Q Consensus 282 ~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~-------~~l~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lg 354 (701)
+|||++|||||++.|+++++||||++||++-. ..+++.|.|++++||.+.++...++.++.++.|.|+ +.|
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE--E~G 234 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE--EEG 234 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec--ccC
Confidence 99999999999999999999999999999876 445899999999999999999999999999999983 356
Q ss_pred cH
Q 005344 355 DE 356 (701)
Q Consensus 355 d~ 356 (701)
.+
T Consensus 235 ~P 236 (256)
T COG4598 235 PP 236 (256)
T ss_pred Ch
Confidence 55
No 237
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.88 E-value=4.6e-22 Score=223.68 Aligned_cols=158 Identities=18% Similarity=0.233 Sum_probs=119.2
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcC--CCCCCcEEEEEcC----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARML--ADDHMKRVVIVDT---------- 254 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlL--sp~~GkrViiVd~---------- 254 (701)
++++||+++|+. ..+++++ +.+|++++|+||||||||||||+|+|++ .|+.|. +++++
T Consensus 1 l~~~~l~~~~~~-----~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~--i~~~~~~~~~~~~~~ 73 (520)
T TIGR03269 1 IEVKNLTKKFDG-----KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR--IIYHVALCEKCGYVE 73 (520)
T ss_pred CEEEEEEEEECC-----eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceE--EEEeccccccccccc
Confidence 468999999973 3688888 8999999999999999999999999997 687776 33320
Q ss_pred -------------C---------------------cccccC-C----CCCCC-------------CCch-----------
Q 005344 255 -------------S---------------------NEIGGD-G----DVPHS-------------GIGR----------- 271 (701)
Q Consensus 255 -------------~---------------------~EIa~~-~----~ip~~-------------~ig~----------- 271 (701)
. ..+++. . .++.. ++..
T Consensus 74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l 153 (520)
T TIGR03269 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLI 153 (520)
T ss_pred cccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 0 001110 0 00100 0000
Q ss_pred ---------hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHH
Q 005344 272 ---------ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDN 334 (701)
Q Consensus 272 ---------~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~ 334 (701)
.+...-.|+|||||++||++++++|++||+||||++||+.++..+ ++.|.+||++||+.+.+.
T Consensus 154 ~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 154 EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIE 233 (520)
T ss_pred HHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 011223578999999999999999999999999999999998654 235899999999999999
Q ss_pred HhcCcEEEEeCCeEEEEecCcH
Q 005344 335 IVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 335 ~l~drvlvl~~G~I~~V~lgd~ 356 (701)
.+||+++.+.+|++. ..+..
T Consensus 234 ~~~d~i~~l~~G~i~--~~g~~ 253 (520)
T TIGR03269 234 DLSDKAIWLENGEIK--EEGTP 253 (520)
T ss_pred HhcCEEEEEeCCEEe--eecCH
Confidence 999999999999983 34444
No 238
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.88 E-value=7e-22 Score=199.14 Aligned_cols=159 Identities=22% Similarity=0.237 Sum_probs=118.0
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC---CCCCc---------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA---DDHMK--------------- 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs---p~~Gk--------------- 247 (701)
.+.+.+++++|.... +...+++++ +.+|++++|+||||||||||+++|+|++. |+.|+
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (226)
T cd03234 3 VLPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81 (226)
T ss_pred cceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcc
Confidence 467889999997320 135688887 89999999999999999999999999998 77774
Q ss_pred EEEEEcCCcccc-cC-----------CCCCC--C----------------CCch--hhhccCCChhHHHHHHHHHHHccC
Q 005344 248 RVVIVDTSNEIG-GD-----------GDVPH--S----------------GIGR--ARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 rViiVd~~~EIa-~~-----------~~ip~--~----------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
.+.++.+...+. .. ...+. . ++.. .+...-.|+|++||++||++++.+
T Consensus 82 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 161 (226)
T cd03234 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD 161 (226)
T ss_pred cEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence 133333321110 00 00000 0 0000 001122477999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcCh-hHHHHhcCcEEEEeCCeE
Q 005344 296 PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGM-TIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~-~l~~~l~drvlvl~~G~I 348 (701)
|++||+|||+++||+.++..+ .+.|.++|+++|+. ..+..+||+++++..|++
T Consensus 162 p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i 222 (226)
T cd03234 162 PKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEI 222 (226)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEE
Confidence 999999999999999998544 44589999999998 588899999999999998
No 239
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.88 E-value=6.1e-22 Score=195.31 Aligned_cols=154 Identities=18% Similarity=0.272 Sum_probs=120.1
Q ss_pred EEEEeEEEEECcccccccceeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccc---------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL-VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIG--------- 259 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa--------- 259 (701)
+.+.++.+.|+.. ..=-|+ +..|++++|+||+||||||||+.|+|...|.+|. +.+++.+..+
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~--i~i~g~d~t~~~P~~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE--ILINGVDHTASPPAERPVS 74 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCce--EEEcCeecCcCCcccCChh
Confidence 5678899999842 332355 9999999999999999999999999999999987 5555543211
Q ss_pred ------------------cCCCCCCCCCchh------------------hhc-cCCChhHHHHHHHHHHHccCCCEEEEc
Q 005344 260 ------------------GDGDVPHSGIGRA------------------RRM-QVPNVNMQHSVMIEAVENHMPETIIID 302 (701)
Q Consensus 260 ------------------~~~~ip~~~ig~~------------------rr~-~v~s~G~qQRV~IArAL~~~PdVIILD 302 (701)
+.+.-|...+... +++ .-.|+|++|||++||+++.+-.|+++|
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLD 154 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLD 154 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEec
Confidence 0111111111100 111 225789999999999999999999999
Q ss_pred CCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEE
Q 005344 303 EIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIES 350 (701)
Q Consensus 303 EPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~ 350 (701)
||+++||+.-+.++ .+++.|++++||..+.+..++++++++.+|+|..
T Consensus 155 EPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~ 210 (231)
T COG3840 155 EPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA 210 (231)
T ss_pred CchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEe
Confidence 99999999988655 6789999999999999999999999999999943
No 240
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.88 E-value=4.9e-22 Score=229.15 Aligned_cols=154 Identities=14% Similarity=0.205 Sum_probs=120.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccccc-----
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGG----- 260 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~----- 260 (701)
++++.+|+++|+. ..+|+++ |.+|++++|+||||||||||||+|+|++.|+.|. +.+++...++.
T Consensus 3 ~l~i~~ls~~~~~-----~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~--I~~~~~~~~~~l~q~~ 75 (635)
T PRK11147 3 LISIHGAWLSFSD-----APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGR--IIYEQDLIVARLQQDP 75 (635)
T ss_pred EEEEeeEEEEeCC-----ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeE--EEeCCCCEEEEeccCC
Confidence 6899999999983 3689988 8999999999999999999999999999999886 33332110000
Q ss_pred ----CCCCC--------------------------------------------C----------------CCCchhhhcc
Q 005344 261 ----DGDVP--------------------------------------------H----------------SGIGRARRMQ 276 (701)
Q Consensus 261 ----~~~ip--------------------------------------------~----------------~~ig~~rr~~ 276 (701)
...+. . .++...+...
T Consensus 76 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 155 (635)
T PRK11147 76 PRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALS 155 (635)
T ss_pred CCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchh
Confidence 00000 0 0000011123
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 277 VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 277 v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
..|+|+|||++||++|+.+|++||+||||++||+.++..+ .+.+.+||++||+..++..+||+++.+.+|++.
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 3578999999999999999999999999999999998654 444679999999999999999999999999984
No 241
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.2e-21 Score=203.36 Aligned_cols=164 Identities=21% Similarity=0.260 Sum_probs=120.2
Q ss_pred ccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-----CCCc----------
Q 005344 186 RNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-----DHMK---------- 247 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-----~~Gk---------- 247 (701)
...+++++|++++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.+ ++|+
T Consensus 22 ~~~~l~~~nl~~~~~~-----~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 22 EQTALEVRNLNLFYGD-----KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CCcEEEEEEEEEEECC-----eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 3456899999999973 3588888 899999999999999999999999999873 5664
Q ss_pred ----------EEEEEcCCcccccC------------CCCCC--------------CCCch------hhhccCCChhHHHH
Q 005344 248 ----------RVVIVDTSNEIGGD------------GDVPH--------------SGIGR------ARRMQVPNVNMQHS 285 (701)
Q Consensus 248 ----------rViiVd~~~EIa~~------------~~ip~--------------~~ig~------~rr~~v~s~G~qQR 285 (701)
.+.++.+...+... ..... .++.. .....-.|+|++||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 176 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQR 176 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHH
Confidence 12222222110000 00000 00000 00112257799999
Q ss_pred HHHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 286 VMIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 286 V~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++||++++.+|++||+|||+++||+.++..+ ...+.++|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 177 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 251 (272)
T PRK14236 177 LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKL--VEYGDT 251 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEE--EecCCH
Confidence 9999999999999999999999999998554 12378999999999999999999999999998 444444
No 242
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.88 E-value=7.1e-22 Score=198.33 Aligned_cols=155 Identities=19% Similarity=0.259 Sum_probs=115.3
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
++++++++.|+.. .+...+++++ +.+|++++|+|+||||||||+++|+|+++|++|+ +++++.+
T Consensus 2 l~~~~l~~~~~~~-~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~~ 78 (220)
T TIGR02982 2 ISIRNLNHYYGHG-SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS--LKVLGQELYGASEKELV 78 (220)
T ss_pred EEEEEEEEEccCC-CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE--EEECCEEhHhcCHhHHH
Confidence 5789999999731 1124688888 8999999999999999999999999999998885 4444321
Q ss_pred ----ccccCC----CCCC--------------CCCch----------hhh----------ccCCChhHHHHHHHHHHHcc
Q 005344 257 ----EIGGDG----DVPH--------------SGIGR----------ARR----------MQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 ----EIa~~~----~ip~--------------~~ig~----------~rr----------~~v~s~G~qQRV~IArAL~~ 294 (701)
.+++.. .++. ..+.. ... ..-.++|++||++||++++.
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~ 158 (220)
T TIGR02982 79 QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVH 158 (220)
T ss_pred HHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 011000 0000 00000 001 11246799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+|++||+|||+++||+.++..+ .+ .|.++|++||+.+.. .+||+++++..|++
T Consensus 159 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 159 RPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 9999999999999999997443 33 589999999999865 69999999999875
No 243
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.88 E-value=1.5e-21 Score=201.01 Aligned_cols=162 Identities=15% Similarity=0.174 Sum_probs=119.8
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.+++++++++|+.. ...+++++ +.+|++++|+|+||||||||+++|+|+++|+.|+
T Consensus 19 ~i~~~~l~~~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 19 EIKIHDLCVRYENN---LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred eEEEEEEEEEeCCC---CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 47899999999731 13588888 8999999999999999999999999999998885
Q ss_pred EEEEEcCCcccccC---CCC-CCC--------------CCchh-hh------------ccCCChhHHHHHHHHHHHccCC
Q 005344 248 RVVIVDTSNEIGGD---GDV-PHS--------------GIGRA-RR------------MQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 248 rViiVd~~~EIa~~---~~i-p~~--------------~ig~~-rr------------~~v~s~G~qQRV~IArAL~~~P 296 (701)
.|.++.+...+... ..+ +.. ++... .. ....+.|++||++||++++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 12333322111000 000 000 00000 00 1235779999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 297 ETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++||+||||++||+.+...+ ...|.|+|++||+.+.+.. ||+++.+.+|++ +..++.
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i--~~~g~~ 238 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGIL--VECDTP 238 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEE--EEeCCH
Confidence 99999999999999988554 1348999999999999875 999999999998 444544
No 244
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.2e-22 Score=222.58 Aligned_cols=157 Identities=15% Similarity=0.195 Sum_probs=117.8
Q ss_pred EeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------------------EEE
Q 005344 193 IGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------------------RVV 250 (701)
Q Consensus 193 ~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------------------rVi 250 (701)
+||+++|+. ..+|+++ +.+|++++|+||||||||||+++|+|++.|++|. +++
T Consensus 2 ~nl~~~~~~-----~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 76 (491)
T PRK10982 2 SNISKSFPG-----VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGIS 76 (491)
T ss_pred CceEEEeCC-----EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 578999973 3688888 8999999999999999999999999999998875 123
Q ss_pred EEcCCccccc-C--------CCCCCCCC--ch--------------------hhhccCCChhHHHHHHHHHHHccCCCEE
Q 005344 251 IVDTSNEIGG-D--------GDVPHSGI--GR--------------------ARRMQVPNVNMQHSVMIEAVENHMPETI 299 (701)
Q Consensus 251 iVd~~~EIa~-~--------~~ip~~~i--g~--------------------~rr~~v~s~G~qQRV~IArAL~~~PdVI 299 (701)
++.+...... . ......+. .. .+...-.|+|||||++||++++.+|++|
T Consensus 77 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~ll 156 (491)
T PRK10982 77 MVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIV 156 (491)
T ss_pred EEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 3332211000 0 00000000 00 0011225789999999999999999999
Q ss_pred EEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 300 IIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 300 ILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|+||||++||+.++..+ ++.|.++|++||+.+++..+||+++++.+|++ +..++.
T Consensus 157 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i--~~~~~~ 218 (491)
T PRK10982 157 IMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQW--IATQPL 218 (491)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EeecCh
Confidence 99999999999998554 45699999999999999999999999999998 434443
No 245
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.88 E-value=6.1e-22 Score=224.63 Aligned_cols=158 Identities=18% Similarity=0.166 Sum_probs=122.7
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEcCCcc
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVDTSNE 257 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd~~~E 257 (701)
.++++.||+++|+. ...+|+++ +.+|++++|+|||||||||||++|+|++.|+.|. +|+++.+...
T Consensus 3 ~~i~~~nls~~~~~----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~ 78 (552)
T TIGR03719 3 YIYTMNRVSKVVPP----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ 78 (552)
T ss_pred EEEEEeeEEEecCC----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC
Confidence 47899999999971 23588888 9999999999999999999999999999998885 3556655432
Q ss_pred cccC---------CC------------------CCCC-----------------------------------CCch-hhh
Q 005344 258 IGGD---------GD------------------VPHS-----------------------------------GIGR-ARR 274 (701)
Q Consensus 258 Ia~~---------~~------------------ip~~-----------------------------------~ig~-~rr 274 (701)
+... +. .+.. ++.. ...
T Consensus 79 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 158 (552)
T TIGR03719 79 LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDAD 158 (552)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCc
Confidence 1000 00 0000 0000 011
Q ss_pred ccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 275 MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 275 ~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
..-.|+|||||++||++++.+|++||+||||++||+.+...+ .+.+.+||++||+.+++..+||+++.+.+|++.
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGI 237 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence 223578999999999999999999999999999999998654 455679999999999999999999999999973
No 246
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.88 E-value=5.6e-22 Score=221.87 Aligned_cols=155 Identities=19% Similarity=0.224 Sum_probs=118.9
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC--CCCc-----------------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD--DHMK----------------- 247 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp--~~Gk----------------- 247 (701)
++++||+++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.| +.|.
T Consensus 2 l~i~~l~~~~~~-----~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (500)
T TIGR02633 2 LEMKGIVKTFGG-----VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76 (500)
T ss_pred EEEEeEEEEeCC-----eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 689999999973 3588888 899999999999999999999999999986 5664
Q ss_pred --EEEEEcCCccccc---------CCC-C-------CC-------------CCCchh---hhccCCChhHHHHHHHHHHH
Q 005344 248 --RVVIVDTSNEIGG---------DGD-V-------PH-------------SGIGRA---RRMQVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 248 --rViiVd~~~EIa~---------~~~-i-------p~-------------~~ig~~---rr~~v~s~G~qQRV~IArAL 292 (701)
.++++.+...+.. ... . .. .++... +...-.|+|||||++||+++
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al 156 (500)
T TIGR02633 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKAL 156 (500)
T ss_pred hCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHH
Confidence 1334433321100 000 0 00 001000 01223578999999999999
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 293 NHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+.+|++||+||||++||+.+...+ ++.|.+||++||+.+++..+||+++++.+|++.
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~ 220 (500)
T TIGR02633 157 NKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220 (500)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEe
Confidence 999999999999999999998554 456999999999999999999999999999983
No 247
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.3e-21 Score=201.57 Aligned_cols=159 Identities=19% Similarity=0.246 Sum_probs=117.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-----CCCcEEEEEcCCc----
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-----DHMKRVVIVDTSN---- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-----~~GkrViiVd~~~---- 256 (701)
++++++++++|+. ..+++++ +.+|++++|+|+||||||||+++|+|++.+ +.|+ +.+++.+
T Consensus 7 ~l~~~~l~~~~~~-----~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~--i~~~g~~i~~~ 79 (259)
T PRK14260 7 AIKVKDLSFYYNT-----SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGV--VDFFGQNIYDP 79 (259)
T ss_pred eEEEEEEEEEECC-----eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceE--EEECCEecccc
Confidence 5789999999973 3588888 899999999999999999999999999875 3564 3333211
Q ss_pred ---------ccccCC----CC------------------CCC-------------CCc----h--hhhccCCChhHHHHH
Q 005344 257 ---------EIGGDG----DV------------------PHS-------------GIG----R--ARRMQVPNVNMQHSV 286 (701)
Q Consensus 257 ---------EIa~~~----~i------------------p~~-------------~ig----~--~rr~~v~s~G~qQRV 286 (701)
.+++.. .+ +.. ++. . .......|+|++||+
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 159 (259)
T PRK14260 80 RININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRL 159 (259)
T ss_pred ccchHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHH
Confidence 011000 00 000 000 0 001122467999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEe-----CCeEEEEecCc
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQIL-----VGGIESVTLGD 355 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~-----~G~I~~V~lgd 355 (701)
+||++++.+|++||+||||++||+.+...+ ...+.|+|++||+.+.+..+||+++++. +|++ +..++
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i--~~~~~ 237 (259)
T PRK14260 160 CIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQM--VEFGV 237 (259)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceE--EEeCC
Confidence 999999999999999999999999988554 1236899999999999999999999997 4888 44555
Q ss_pred H
Q 005344 356 E 356 (701)
Q Consensus 356 ~ 356 (701)
.
T Consensus 238 ~ 238 (259)
T PRK14260 238 T 238 (259)
T ss_pred H
Confidence 5
No 248
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.1e-21 Score=200.64 Aligned_cols=159 Identities=20% Similarity=0.255 Sum_probs=116.6
Q ss_pred EEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC-----CCCCc---------------
Q 005344 191 QVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA-----DDHMK--------------- 247 (701)
Q Consensus 191 eI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs-----p~~Gk--------------- 247 (701)
++.+|+++|+. ..+++++ +.+|++++|+|+||||||||+++|+|++. |+.|.
T Consensus 7 ~~~~l~~~~~~-----~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 7 SVKNLNLWYGS-----KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EeeeEEEEECC-----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 58899999972 3688888 89999999999999999999999999986 34664
Q ss_pred -----EEEEEcCCcccccC---C--CCC--CCCC--c---------h-hhh--------------ccCCChhHHHHHHHH
Q 005344 248 -----RVVIVDTSNEIGGD---G--DVP--HSGI--G---------R-ARR--------------MQVPNVNMQHSVMIE 289 (701)
Q Consensus 248 -----rViiVd~~~EIa~~---~--~ip--~~~i--g---------~-~rr--------------~~v~s~G~qQRV~IA 289 (701)
.+.++.+...+-.. . .+. ..+. . . ... ..-.|+|++||++||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred HHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 12333332111000 0 000 0000 0 0 011 112467999999999
Q ss_pred HHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 290 AVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 290 rAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++++.+|++||+||||++||+.+...+ ...|.|+|++||+..++..+||+++++..|++ +..++.
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i--~~~~~~ 232 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRI--VEYNTT 232 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEE--EEeCCH
Confidence 999999999999999999999988544 23489999999999999999999999999998 434444
No 249
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.4e-22 Score=228.42 Aligned_cols=157 Identities=17% Similarity=0.232 Sum_probs=123.5
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEcCCc
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVDTSN 256 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd~~~ 256 (701)
+.++++.+|++.|+. ..+|+++ |.+|++++|+|||||||||||++|+|++.|++|. +|+|+++..
T Consensus 310 ~~~l~~~~l~~~y~~-----~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~ 384 (638)
T PRK10636 310 NPLLKMEKVSAGYGD-----RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQ 384 (638)
T ss_pred CceEEEEeeEEEeCC-----eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcc
Confidence 457899999999973 3588888 8999999999999999999999999999998874 456666642
Q ss_pred -c-cccC-------CCC-CC------------CCCch---hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHH
Q 005344 257 -E-IGGD-------GDV-PH------------SGIGR---ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEAL 311 (701)
Q Consensus 257 -E-Ia~~-------~~i-p~------------~~ig~---~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~ 311 (701)
. +... ... +. +++.. .......|+|+|||++||++++.+|++|||||||++||+.
T Consensus 385 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~ 464 (638)
T PRK10636 385 LEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLD 464 (638)
T ss_pred hhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 1 1000 000 00 01110 0122346889999999999999999999999999999999
Q ss_pred HHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 312 AASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 312 a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+...+ .+.+.|||++|||..++..+||+++++.+|++
T Consensus 465 ~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i 505 (638)
T PRK10636 465 MRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505 (638)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 98665 34455999999999999999999999999998
No 250
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.6e-21 Score=204.56 Aligned_cols=165 Identities=20% Similarity=0.229 Sum_probs=119.4
Q ss_pred hccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC-----CCCCc---------
Q 005344 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA-----DDHMK--------- 247 (701)
Q Consensus 185 ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs-----p~~Gk--------- 247 (701)
....++++.+|+++|+. ..+|+++ |.+|++++|+||||||||||+++|+|++. |+.|.
T Consensus 35 ~~~~~l~i~~l~~~~~~-----~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 35 SGETVIEARDLNVFYGD-----EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred CCCceEEEEEEEEEECC-----EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 44557899999999973 3588888 89999999999999999999999999986 46664
Q ss_pred -----------EEEEEcCCcccccC------------CCCCC------------CCCc----h--hhhccCCChhHHHHH
Q 005344 248 -----------RVVIVDTSNEIGGD------------GDVPH------------SGIG----R--ARRMQVPNVNMQHSV 286 (701)
Q Consensus 248 -----------rViiVd~~~EIa~~------------~~ip~------------~~ig----~--~rr~~v~s~G~qQRV 286 (701)
+++++.+....-.. ...+. .++. . .....-.|+|++||+
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv 189 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRL 189 (285)
T ss_pred ccccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHH
Confidence 12233222110000 00000 0000 0 011123577999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEE-EEeCCeEEEEecCcH
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSL-QILVGGIESVTLGDE 356 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvl-vl~~G~I~~V~lgd~ 356 (701)
+||++++.+|++||+|||+++||+.++..+ . ..+.++|++||+.+++..+||+++ ++..|++ +..++.
T Consensus 190 ~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i--~~~g~~ 264 (285)
T PRK14254 190 CIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGEL--VEFDDT 264 (285)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEE--EEeCCH
Confidence 999999999999999999999999988554 1 125799999999999999999975 5689998 444544
No 251
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.8e-21 Score=201.10 Aligned_cols=161 Identities=22% Similarity=0.310 Sum_probs=119.5
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-----CCCcEEEEEcCCc--
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-----DHMKRVVIVDTSN-- 256 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-----~~GkrViiVd~~~-- 256 (701)
...+++++|+++|+. ..+++++ +.+|++++|+|+||||||||+++|+|++.| ++|. +++++.+
T Consensus 14 ~~~l~~~~l~~~~~~-----~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~--i~~~g~~~~ 86 (265)
T PRK14252 14 QQKSEVNKLNFYYGG-----YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGE--IILHPDNVN 86 (265)
T ss_pred CceEEEEEEEEEECC-----eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccE--EEEcCcccc
Confidence 345789999999973 3688888 899999999999999999999999999875 4564 3332210
Q ss_pred -------------ccccCCC----CCC------------CCC------ch-----h--------------hhccCCChhH
Q 005344 257 -------------EIGGDGD----VPH------------SGI------GR-----A--------------RRMQVPNVNM 282 (701)
Q Consensus 257 -------------EIa~~~~----ip~------------~~i------g~-----~--------------rr~~v~s~G~ 282 (701)
.+++... ++. .+. .. . ....-.++|+
T Consensus 87 ~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 166 (265)
T PRK14252 87 ILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQ 166 (265)
T ss_pred ccccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHH
Confidence 0111000 000 000 00 0 0112256799
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 283 QHSVMIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 283 qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||++|+++++.+|++||+|||+++||+.+...+ ...+.++|++||+.+++..+||+++++..|++ +..++.
T Consensus 167 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i--~~~g~~ 244 (265)
T PRK14252 167 QQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGEL--IEFGAT 244 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 9999999999999999999999999999998554 12368999999999999999999999999998 444554
No 252
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.88 E-value=8e-22 Score=199.44 Aligned_cols=141 Identities=18% Similarity=0.204 Sum_probs=103.5
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCC----CCCc----------------EEEEEcCCcccccCCCC---------
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLAD----DHMK----------------RVVIVDTSNEIGGDGDV--------- 264 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp----~~Gk----------------rViiVd~~~EIa~~~~i--------- 264 (701)
+.+|++++|+||||||||||+++|+|++.| +.|+ .|+++.+..........
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~ 88 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIET 88 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHH
Confidence 678999999999999999999999999998 6774 23333332110000000
Q ss_pred -CCC------------------CCc---h--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH----
Q 005344 265 -PHS------------------GIG---R--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI---- 316 (701)
Q Consensus 265 -p~~------------------~ig---~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l---- 316 (701)
... ++. . .....-.|+|++||++||++++++|++||+||||++||+.+...+
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l 168 (230)
T TIGR02770 89 LRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLL 168 (230)
T ss_pred HHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH
Confidence 000 010 0 001122467999999999999999999999999999999987543
Q ss_pred ---Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 317 ---AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 317 ---~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++ .|.+||++||+.+.+..+||+++++..|++ +..+..
T Consensus 169 ~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i--~~~~~~ 210 (230)
T TIGR02770 169 RELRQLFGTGILLITHDLGVVARIADEVAVMDDGRI--VERGTV 210 (230)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 33 489999999999999999999999999998 334444
No 253
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.5e-21 Score=199.97 Aligned_cols=162 Identities=19% Similarity=0.224 Sum_probs=118.4
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-----CCCc------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-----DHMK------------ 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-----~~Gk------------ 247 (701)
.++++++++++|+. ..+|+++ +.+|++++|+||||||||||+++|+|++.+ +.|.
T Consensus 5 ~~i~~~~l~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 79 (253)
T PRK14261 5 IILSTKNLNLWYGE-----KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79 (253)
T ss_pred ceEEEeeeEEEECC-----eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence 36889999999973 3688888 899999999999999999999999998752 2464
Q ss_pred --------EEEEEcCCcccccC------CC-CCCCCC-ch------------------------hhhccCCChhHHHHHH
Q 005344 248 --------RVVIVDTSNEIGGD------GD-VPHSGI-GR------------------------ARRMQVPNVNMQHSVM 287 (701)
Q Consensus 248 --------rViiVd~~~EIa~~------~~-ip~~~i-g~------------------------~rr~~v~s~G~qQRV~ 287 (701)
.++++.+...+... .. ....+. .. .....-.|+|++||++
T Consensus 80 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 80 ADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred cchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence 12232222111000 00 000000 00 0011125779999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||++++.+|++||+|||+++||+.++..+ ...+.++|++||+...+..+||+++++.+|++ +..++.
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i--~~~g~~ 232 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKL--IEFDKT 232 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEE--EEcCCH
Confidence 99999999999999999999999998544 12368999999999999999999999999998 445554
No 254
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.87 E-value=1.5e-21 Score=204.48 Aligned_cols=160 Identities=16% Similarity=0.221 Sum_probs=118.7
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------E
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------R 248 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------r 248 (701)
++++||+++|.. +...+|+++ |.+|++++|+|+||||||||+++|+|++. ..|+ +
T Consensus 3 i~~~nls~~~~~---~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 3 MTVKDLTAKYTE---GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred EEEEEEEEEeCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 679999999952 123588888 99999999999999999999999999997 5675 2
Q ss_pred EEEEcCCcccccC---CCC-CC--------------CCCchh-hhc------------cCCChhHHHHHHHHHHHccCCC
Q 005344 249 VVIVDTSNEIGGD---GDV-PH--------------SGIGRA-RRM------------QVPNVNMQHSVMIEAVENHMPE 297 (701)
Q Consensus 249 ViiVd~~~EIa~~---~~i-p~--------------~~ig~~-rr~------------~v~s~G~qQRV~IArAL~~~Pd 297 (701)
+.++++...+-.. ..+ +. .++... ..+ ...++||+||++||++++.+|+
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3333332211000 000 00 011000 010 0267899999999999999999
Q ss_pred EEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 298 TIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 298 VIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||+||||++||+.+...+ . ..|+|+|++||+.+.+.. ||++++|.+|++ +..+.+
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i--~~~g~~ 220 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKV--RQYDSI 220 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeE--eecCCH
Confidence 9999999999999988544 2 348999999999998865 999999999999 666666
No 255
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.87 E-value=2.1e-21 Score=218.38 Aligned_cols=166 Identities=17% Similarity=0.190 Sum_probs=124.7
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccc-ccC-
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEI-GGD- 261 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EI-a~~- 261 (701)
..++++.+|+++|+.. ....+|+++ +.+|++++|+|||||||||||++|+|++.|+.|. +.+++.... ...
T Consensus 19 ~~mL~lknL~~~~~~~--~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGe--I~I~G~~~~i~~~~ 94 (549)
T PRK13545 19 KPFDKLKDLFFRSKDG--EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGT--VDIKGSAALIAISS 94 (549)
T ss_pred cceeEEEEEEEecCCC--ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceE--EEECCEeeeEEecc
Confidence 3467899999888741 113578888 8999999999999999999999999999999887 445442210 000
Q ss_pred CCCCC-------------------------------CCCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcc
Q 005344 262 GDVPH-------------------------------SGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTEL 308 (701)
Q Consensus 262 ~~ip~-------------------------------~~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgL 308 (701)
...+. .++.. .+...-.|+||+||++||++++.+|++||+||||++|
T Consensus 95 ~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgL 174 (549)
T PRK13545 95 GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVG 174 (549)
T ss_pred ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 00000 00100 0112235789999999999999999999999999999
Q ss_pred cHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 309 EALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 309 D~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
|+.++..+ ++.|.++|++||+.+.+..+||+++.+..|++ +..++...
T Consensus 175 D~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkI--v~~G~~~e 229 (549)
T PRK13545 175 DQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQV--KEYGDIKE 229 (549)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEECCHHH
Confidence 99987543 45689999999999999999999999999998 44555433
No 256
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.87 E-value=9.3e-22 Score=221.82 Aligned_cols=166 Identities=17% Similarity=0.234 Sum_probs=121.2
Q ss_pred ceEEEEeEEEEECccc------ccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------
Q 005344 188 RKMQVIGLTCRVGRAV------AGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v------~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------- 247 (701)
.++++++|+++|+... .+...+|+++ +.+|++++|+||||||||||+|+|+|+++ +.|+
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 4689999999996210 0124588888 99999999999999999999999999985 5564
Q ss_pred ----------EEEEEcCCcc--c-ccC--------C------CCCC-------------CCCch---hhhccCCChhHHH
Q 005344 248 ----------RVVIVDTSNE--I-GGD--------G------DVPH-------------SGIGR---ARRMQVPNVNMQH 284 (701)
Q Consensus 248 ----------rViiVd~~~E--I-a~~--------~------~ip~-------------~~ig~---~rr~~v~s~G~qQ 284 (701)
++.++.+... + ... . .... .++.. .+...-.|+||||
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q 432 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQ 432 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHH
Confidence 1333333210 0 000 0 0000 01100 0111235789999
Q ss_pred HHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 285 SVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 285 RV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||++++.+|++||+||||++||+.++..+ ++ .|.+||++||+++++..+||+++++.+|++ +..++.
T Consensus 433 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i--~~~~~~ 510 (529)
T PRK15134 433 RIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEV--VEQGDC 510 (529)
T ss_pred HHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEE--EEEcCH
Confidence 99999999999999999999999999998554 33 489999999999999999999999999998 444444
No 257
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=7e-22 Score=196.67 Aligned_cols=155 Identities=21% Similarity=0.303 Sum_probs=120.4
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccc-------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEI------- 258 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EI------- 258 (701)
++.+.+++..|... ...+++++ |.+|+.++++||+||||||||+.++|+..|..|. +.++++.--
T Consensus 3 ~l~~~~~sl~y~g~---~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~--i~l~~r~i~gPgaerg 77 (259)
T COG4525 3 MLNVSHLSLSYEGK---PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS--IQLNGRRIEGPGAERG 77 (259)
T ss_pred eeehhheEEecCCc---chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccce--EEECCEeccCCCccce
Confidence 46788999999843 24588888 8999999999999999999999999999999875 444443110
Q ss_pred ---ccCCCCCCC-------------CCchh--------------------hhccCCChhHHHHHHHHHHHccCCCEEEEc
Q 005344 259 ---GGDGDVPHS-------------GIGRA--------------------RRMQVPNVNMQHSVMIEAVENHMPETIIID 302 (701)
Q Consensus 259 ---a~~~~ip~~-------------~ig~~--------------------rr~~v~s~G~qQRV~IArAL~~~PdVIILD 302 (701)
+....+|.. ++... +..--.|+||+||+.|||||+.+|+.|++|
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLD 157 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLD 157 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeec
Confidence 001122221 11111 011125789999999999999999999999
Q ss_pred CCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeC--CeE
Q 005344 303 EIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILV--GGI 348 (701)
Q Consensus 303 EPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~--G~I 348 (701)
||+.+||+..++.+ .+.|..++++||+.+++-.++++.+++.. |+|
T Consensus 158 EPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRv 213 (259)
T COG4525 158 EPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRV 213 (259)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCcee
Confidence 99999999999765 67899999999999999999999999985 556
No 258
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.87 E-value=1.2e-21 Score=198.64 Aligned_cols=133 Identities=20% Similarity=0.254 Sum_probs=101.9
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc------cccC----CCCCC---------------CC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE------IGGD----GDVPH---------------SG 268 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E------Ia~~----~~ip~---------------~~ 268 (701)
+.+|++++|+||||||||||+++|+|++.|++|. +.+++.+- .+.. ..++. ..
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~ 85 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGG--VILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPD 85 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccC
Confidence 6689999999999999999999999999999886 44443210 0000 00000 00
Q ss_pred Cch----------hh----------hccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cC
Q 005344 269 IGR----------AR----------RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RG 320 (701)
Q Consensus 269 ig~----------~r----------r~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~G 320 (701)
... .. ...-.|+|++||++||++++.+|++||+||||++||+.++..+ .+ .|
T Consensus 86 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~ 165 (230)
T TIGR01184 86 LSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165 (230)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC
Confidence 000 00 1112477999999999999999999999999999999998554 23 48
Q ss_pred CEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 321 VQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 321 vtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
.++|++||+.+.+..+||+++++.+|++
T Consensus 166 ~tii~~sH~~~~~~~~~d~v~~l~~G~i 193 (230)
T TIGR01184 166 VTVLMVTHDVDEALLLSDRVVMLTNGPA 193 (230)
T ss_pred CEEEEEeCCHHHHHHhcCEEEEEeCCcE
Confidence 9999999999999999999999999998
No 259
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.87 E-value=1.7e-21 Score=195.10 Aligned_cols=149 Identities=14% Similarity=0.157 Sum_probs=111.1
Q ss_pred EEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-----------
Q 005344 191 QVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN----------- 256 (701)
Q Consensus 191 eI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~----------- 256 (701)
.+.+++++|+. ...+++++ +.+|++++|+|||||||||||++|+|++.|+.|. +.+++..
T Consensus 2 ~~~~~~~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~--i~~~g~~~~~~~~~~~~~ 75 (218)
T cd03290 2 QVTNGYFSWGS----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGK--VHWSNKNESEPSFEATRS 75 (218)
T ss_pred eeeeeEEecCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCe--EEECCcccccccccccch
Confidence 47889999973 24688888 8999999999999999999999999999988885 3443321
Q ss_pred ----ccccCCCCCC---------------C------------CCchh-------------hhccCCChhHHHHHHHHHHH
Q 005344 257 ----EIGGDGDVPH---------------S------------GIGRA-------------RRMQVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 257 ----EIa~~~~ip~---------------~------------~ig~~-------------rr~~v~s~G~qQRV~IArAL 292 (701)
.+++....+. . ++... ......++|++||++||+++
T Consensus 76 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral 155 (218)
T cd03290 76 RNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARAL 155 (218)
T ss_pred hhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHH
Confidence 0111000000 0 00000 01123577999999999999
Q ss_pred ccCCCEEEEcCCCCcccHHHHHH---------HHhcCCEEEEEEcChhHHHHhcCcEEEEeCC
Q 005344 293 NHMPETIIIDEIGTELEALAAST---------IAQRGVQLVGTAHGMTIDNIVKNPSLQILVG 346 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~~a~~~---------l~e~GvtVIiTTHd~~l~~~l~drvlvl~~G 346 (701)
+.+|++||+||||++||+.++.. +++.|.|+|++||+.+.+. .||+++.+.+|
T Consensus 156 ~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G 217 (218)
T cd03290 156 YQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDG 217 (218)
T ss_pred hhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCC
Confidence 99999999999999999997642 2345899999999999886 69999998877
No 260
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.1e-21 Score=220.15 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=117.7
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc----------------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK---------------- 247 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk---------------- 247 (701)
..++++++|++.|+ .+|+++ +.+|++++|+||||||||||+++|+|++.|+.|+
T Consensus 263 ~~~l~~~~l~~~~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 335 (510)
T PRK09700 263 ETVFEVRNVTSRDR-------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDA 335 (510)
T ss_pred CcEEEEeCccccCC-------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHH
Confidence 44789999998653 368887 8999999999999999999999999999998775
Q ss_pred ---EEEEEcCCc---cc-ccC---C--CCCC-----------------------------CCCc-h--hhhccCCChhHH
Q 005344 248 ---RVVIVDTSN---EI-GGD---G--DVPH-----------------------------SGIG-R--ARRMQVPNVNMQ 283 (701)
Q Consensus 248 ---rViiVd~~~---EI-a~~---~--~ip~-----------------------------~~ig-~--~rr~~v~s~G~q 283 (701)
+++++.+.. .+ ... . .+.. .++. . .+...-.|+|||
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 415 (510)
T PRK09700 336 VKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQ 415 (510)
T ss_pred HHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHH
Confidence 123333321 00 000 0 0000 0000 0 001112467999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 284 HSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 284 QRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
||++||++++++|++||+||||++||+.+...+ ++.|.+||++||+.+++..+||+++++.+|++.
T Consensus 416 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 416 QKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999998544 456999999999999999999999999999984
No 261
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.6e-21 Score=196.55 Aligned_cols=159 Identities=23% Similarity=0.313 Sum_probs=118.3
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC-----CCCCcEEEEEcCCcc---
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA-----DDHMKRVVIVDTSNE--- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs-----p~~GkrViiVd~~~E--- 257 (701)
++++++|++.|+. ..+++++ +.+|++++|+||||||||||+++|+|++. ++.|+ +.+++.+-
T Consensus 3 ~l~~~~v~~~~~~-----~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~--v~~~g~~i~~~ 75 (250)
T PRK14266 3 RIEVENLNTYFDD-----AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGH--IYLDGVDIYDP 75 (250)
T ss_pred EEEEEeEEEEeCC-----eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccE--EEECCEEcccc
Confidence 5789999999973 3588888 89999999999999999999999999864 25664 33333210
Q ss_pred ----------cccCC----CCC------------CCCC-c-h-----------------------hhhccCCChhHHHHH
Q 005344 258 ----------IGGDG----DVP------------HSGI-G-R-----------------------ARRMQVPNVNMQHSV 286 (701)
Q Consensus 258 ----------Ia~~~----~ip------------~~~i-g-~-----------------------~rr~~v~s~G~qQRV 286 (701)
+++.. .++ ..+. . . .......++|++||+
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 76 AVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRL 155 (250)
T ss_pred cccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHH
Confidence 10000 000 0000 0 0 001122577999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||++++.+|++||+|||+++||+.+...+ ...|.++|++||+...+..+|++++++..|++ +..++.
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i--~~~g~~ 229 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEI--IESGLT 229 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeE--EEeCCH
Confidence 999999999999999999999999988554 13489999999999999999999999999998 444554
No 262
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.1e-21 Score=220.18 Aligned_cols=161 Identities=15% Similarity=0.137 Sum_probs=119.7
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC-CCCCc---------------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA-DDHMK--------------- 247 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs-p~~Gk--------------- 247 (701)
..++++++|+++|+.. +...+++++ +.+|++++|+||||||||||+|+|+|+++ |++|+
T Consensus 257 ~~~l~~~~l~~~~~~~--~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 257 EVILEVRNLTAWDPVN--PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred CceEEEecCccccccc--cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHH
Confidence 3468999999998421 123578887 89999999999999999999999999998 47765
Q ss_pred ----EEEEEcCCcc---c-ccC--------C---CCCC-------------------CCCc-h--hhhccCCChhHHHHH
Q 005344 248 ----RVVIVDTSNE---I-GGD--------G---DVPH-------------------SGIG-R--ARRMQVPNVNMQHSV 286 (701)
Q Consensus 248 ----rViiVd~~~E---I-a~~--------~---~ip~-------------------~~ig-~--~rr~~v~s~G~qQRV 286 (701)
.++++.+... + ... . .... .++. . .+...-.|+|||||+
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv 414 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA 414 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHH
Confidence 1233333210 0 000 0 0000 0000 0 001122467999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+||++++.+|++||+||||++||+.++..+ ++.|.|||++||+.+++..+||+++++.+|++.
T Consensus 415 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~ 484 (506)
T PRK13549 415 VLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484 (506)
T ss_pred HHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999998554 456999999999999999999999999999984
No 263
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.87 E-value=9.2e-22 Score=219.83 Aligned_cols=154 Identities=15% Similarity=0.139 Sum_probs=118.9
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE------ 257 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E------ 257 (701)
+.+++++||++++. .+++++ +.+|++++|+||||||||||+++|+|+++|++|+ +.+++.+-
T Consensus 248 ~~~i~~~~l~~~~~-------~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~i~~~~~~ 318 (491)
T PRK10982 248 EVILEVRNLTSLRQ-------PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGT--ITLHGKKINNHNAN 318 (491)
T ss_pred CcEEEEeCcccccC-------cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccE--EEECCEECCCCCHH
Confidence 45789999988632 478887 9999999999999999999999999999998886 44443110
Q ss_pred ------cccCCC-------CCC------------------CCC-ch---------------------hhhccCCChhHHH
Q 005344 258 ------IGGDGD-------VPH------------------SGI-GR---------------------ARRMQVPNVNMQH 284 (701)
Q Consensus 258 ------Ia~~~~-------ip~------------------~~i-g~---------------------~rr~~v~s~G~qQ 284 (701)
+++... ++. .++ .. .....-.|+||||
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQ 398 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHH
Confidence 111000 000 000 00 0011224779999
Q ss_pred HHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 285 SVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 285 RV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
|++||++++.+|++||+||||++||+.++..+ .+.|.|||++||+.+++..+||+++.+.+|++.
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEE
Confidence 99999999999999999999999999998554 567999999999999999999999999999984
No 264
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.9e-21 Score=198.90 Aligned_cols=160 Identities=19% Similarity=0.159 Sum_probs=118.5
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-----CCCcEEEEEcCCcc--
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-----DHMKRVVIVDTSNE-- 257 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-----~~GkrViiVd~~~E-- 257 (701)
..+.+++++++|++ ..+++++ +.+|++++|+|+||||||||+++|+|++.| +.|+ +.+++.+-
T Consensus 7 ~~~~~~~~~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~--i~~~g~~i~~ 79 (261)
T PRK14263 7 IVMDCKLDKIFYGN-----FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGH--VHFLGQDVYG 79 (261)
T ss_pred ceEEEEeEEEEeCC-----EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceE--EEECCEeccc
Confidence 35678899999974 3588888 999999999999999999999999999976 4664 33333210
Q ss_pred -----------cccCC---CCCCC------C-------Cc-h--------hhh--------------ccCCChhHHHHHH
Q 005344 258 -----------IGGDG---DVPHS------G-------IG-R--------ARR--------------MQVPNVNMQHSVM 287 (701)
Q Consensus 258 -----------Ia~~~---~ip~~------~-------ig-~--------~rr--------------~~v~s~G~qQRV~ 287 (701)
++... .+... . .. . .+. ....++|++||++
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~ 159 (261)
T PRK14263 80 KGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLC 159 (261)
T ss_pred cccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 00000 00000 0 00 0 000 1125779999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEe--------CCeEEEEec
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQIL--------VGGIESVTL 353 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~--------~G~I~~V~l 353 (701)
||++++.+|++||+||||++||+.++..+ ...|.++|++||+.+++..+||+++++. .|++ +..
T Consensus 160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i--~~~ 237 (261)
T PRK14263 160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYL--VEM 237 (261)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceE--EEe
Confidence 99999999999999999999999998554 1347899999999999999999999996 7888 545
Q ss_pred CcH
Q 005344 354 GDE 356 (701)
Q Consensus 354 gd~ 356 (701)
++.
T Consensus 238 g~~ 240 (261)
T PRK14263 238 GPT 240 (261)
T ss_pred CCH
Confidence 554
No 265
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.87 E-value=1.1e-21 Score=228.11 Aligned_cols=162 Identities=16% Similarity=0.237 Sum_probs=124.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.++++|++++|+.. ...+|+++ |++||.++|+|+||||||||+|.|.|++.|..|+
T Consensus 471 ~I~~~nvsf~y~~~---~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 471 EIEFENVSFRYGPD---DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred eEEEEEEEEEeCCC---CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 57899999999853 34688888 9999999999999999999999999999999885
Q ss_pred EEEEEcCCccccc-------CCCCCCCC------------Cchh-------hhcc------CCChhHHHHHHHHHHHccC
Q 005344 248 RVVIVDTSNEIGG-------DGDVPHSG------------IGRA-------RRMQ------VPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 rViiVd~~~EIa~-------~~~ip~~~------------ig~~-------rr~~------v~s~G~qQRV~IArAL~~~ 295 (701)
.|++|.|.+.+-. ....|... .... -.+. -.|+|+|||++|||++.++
T Consensus 548 ~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 548 QVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred heeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 3444444422100 00001100 0000 0111 2578999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 296 PETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||+||||++||..+.+.+ ...|+|+|+++|....+ ..||++++|+.|+| +..|+-
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti-~~adrIiVl~~Gki--v~~gs~ 691 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI-RSADRIIVLDQGKI--VEQGSH 691 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHh-hhccEEEEccCCce--eccCCH
Confidence 999999999999999988655 23579999999999887 58999999999999 666665
No 266
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=2e-21 Score=200.01 Aligned_cols=135 Identities=18% Similarity=0.176 Sum_probs=101.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------EEEEEcCCcccccC-----------CCC-C----------
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIGGD-----------GDV-P---------- 265 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------rViiVd~~~EIa~~-----------~~i-p---------- 265 (701)
+.+|++++|+|||||||||||++|+|++.|+.|. +|.++.+....... ... .
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~ 101 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK 101 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHH
Confidence 6789999999999999999999999999998874 34455443221000 000 0
Q ss_pred CCCCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHH
Q 005344 266 HSGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNI 335 (701)
Q Consensus 266 ~~~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~ 335 (701)
..++.. .+.....|+|++||++||++|+.+|++||+||||++||+.++..+ + +.|.++|++||+..++..
T Consensus 102 ~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 102 PLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred HcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 000100 011223578999999999999999999999999999999998544 2 348999999999999999
Q ss_pred hcCcEEEEeCCeE
Q 005344 336 VKNPSLQILVGGI 348 (701)
Q Consensus 336 l~drvlvl~~G~I 348 (701)
+||+++++..+..
T Consensus 182 ~~d~i~~l~~~~~ 194 (246)
T cd03237 182 LADRLIVFEGEPS 194 (246)
T ss_pred hCCEEEEEcCCCe
Confidence 9999999966543
No 267
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=1.7e-21 Score=193.07 Aligned_cols=140 Identities=20% Similarity=0.245 Sum_probs=105.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
++++++++++|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|+ +++++.+
T Consensus 1 ml~~~~l~~~~~~-----~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~--v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 1 MLDVIELDFDYHD-----QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE--ILFERQSIKKDLCTYQ 73 (200)
T ss_pred CEEEEEEEEEeCC-----eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCee--EEECCCccccCHHHHH
Confidence 3689999999973 3688888 8999999999999999999999999999999886 5555431
Q ss_pred -ccccCC----CCCCC--------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcC
Q 005344 257 -EIGGDG----DVPHS--------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303 (701)
Q Consensus 257 -EIa~~~----~ip~~--------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDE 303 (701)
.+++.. ..+.. ++.. .+.....++|++||++||++++++|++||+||
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDE 153 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDE 153 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 011100 00110 0000 00111247799999999999999999999999
Q ss_pred CCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHH
Q 005344 304 IGTELEALAASTI-------AQRGVQLVGTAHGMTIDNI 335 (701)
Q Consensus 304 PtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~ 335 (701)
|+++||+.++..+ ++.|.++|++||+...++.
T Consensus 154 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 154 PLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred CCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence 9999999998554 3568999999999887754
No 268
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.87 E-value=1.9e-21 Score=217.67 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=119.7
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-CCCc---------------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-DHMK--------------- 247 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-~~Gk--------------- 247 (701)
.++++++|++++|+.. +...+++++ +.+|++++|+|||||||||||++|+|++.| ++|.
T Consensus 255 ~~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~ 332 (500)
T TIGR02633 255 DVILEARNLTCWDVIN--PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQ 332 (500)
T ss_pred CceEEEeCCccccccc--ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHH
Confidence 4578999999998410 123578888 899999999999999999999999999985 6665
Q ss_pred ----EEEEEcCCcc---c-cc--------CCCCCCC----CCch---------------------hhhccCCChhHHHHH
Q 005344 248 ----RVVIVDTSNE---I-GG--------DGDVPHS----GIGR---------------------ARRMQVPNVNMQHSV 286 (701)
Q Consensus 248 ----rViiVd~~~E---I-a~--------~~~ip~~----~ig~---------------------~rr~~v~s~G~qQRV 286 (701)
+++++.+... + .. ....... .+.. .+.....|+|||||+
T Consensus 333 ~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 412 (500)
T TIGR02633 333 AIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKA 412 (500)
T ss_pred HHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHH
Confidence 1223332210 0 00 0000000 0000 001123477999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEE
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIES 350 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~ 350 (701)
+||++++++|++||+||||++||+.++..+ ++.|.+||++||+.+++..+||+++++.+|++..
T Consensus 413 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred HHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998543 5569999999999999999999999999999843
No 269
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5.1e-21 Score=205.10 Aligned_cols=165 Identities=18% Similarity=0.304 Sum_probs=122.4
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC-----CCCCc-------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA-----DDHMK------------- 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs-----p~~Gk------------- 247 (701)
++++++++++|.. +...+|+++ |.+|++++|+|||||||||||++|+|+.. |+.|.
T Consensus 80 ~i~~~nls~~y~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 80 VFEIRNFNFWYMN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred eEEEEeeEEEecC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 6789999999963 134589988 99999999999999999999999999985 34564
Q ss_pred -------EEEEEcCCcccccCC-----CC-CCC-CCc-h------------------------hhhccCCChhHHHHHHH
Q 005344 248 -------RVVIVDTSNEIGGDG-----DV-PHS-GIG-R------------------------ARRMQVPNVNMQHSVMI 288 (701)
Q Consensus 248 -------rViiVd~~~EIa~~~-----~i-p~~-~ig-~------------------------~rr~~v~s~G~qQRV~I 288 (701)
++.++.+...+.... .+ +.. ... . .......|+|+|||++|
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 233343332110000 00 000 000 0 00111247799999999
Q ss_pred HHHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 289 EAVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 289 ArAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
|||++.+|++||+||||++||+.+...+ ...+.|+|++||+++.+..+||+++++.+|++ +..|++..
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i--~e~g~~~~ 310 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWI--EEAGETKT 310 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCHHH
Confidence 9999999999999999999999988554 23479999999999999999999999999999 55666633
No 270
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.8e-21 Score=199.31 Aligned_cols=160 Identities=23% Similarity=0.274 Sum_probs=121.7
Q ss_pred hhccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------EEEEEcC
Q 005344 184 AIRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDT 254 (701)
Q Consensus 184 ~ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------rViiVd~ 254 (701)
++....|+++|++++|+ .+.+|.++ |++|+.++|+|||||||||||+.++|...|++|. +.+-.+.
T Consensus 26 ~~~~~li~l~~v~v~r~-----gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~ 100 (257)
T COG1119 26 EINEPLIELKNVSVRRN-----GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGET 100 (257)
T ss_pred CCCcceEEecceEEEEC-----CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcc
Confidence 34556799999999998 45899999 9999999999999999999999999999998653 1111111
Q ss_pred ----CcccccC--------------------C-----CCCCCCCch-------------------hhhccCCChhHHHHH
Q 005344 255 ----SNEIGGD--------------------G-----DVPHSGIGR-------------------ARRMQVPNVNMQHSV 286 (701)
Q Consensus 255 ----~~EIa~~--------------------~-----~ip~~~ig~-------------------~rr~~v~s~G~qQRV 286 (701)
+..|+.+ + ++.+..... .+.+...|-|+|+|+
T Consensus 101 ~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrv 180 (257)
T COG1119 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRV 180 (257)
T ss_pred hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHH
Confidence 0011100 0 001100000 023334577999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHHH-------H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAASTI-------A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+||||++++|++||||||++|||..+++.+ + ..+.++|++||..+++-...++++.+.+|++
T Consensus 181 LiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v 251 (257)
T COG1119 181 LIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEV 251 (257)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCce
Confidence 999999999999999999999999999655 2 2378999999999999999999999999998
No 271
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.86 E-value=2.9e-21 Score=222.76 Aligned_cols=160 Identities=16% Similarity=0.246 Sum_probs=123.7
Q ss_pred ccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEcCC
Q 005344 186 RNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVDTS 255 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd~~ 255 (701)
.+.++++.||+++|+. ..+|+++ |.+|++++|+|||||||||||++|+|++.|+.|. +|+++++.
T Consensus 316 ~~~~l~~~~l~~~~~~-----~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~ 390 (635)
T PRK11147 316 GKIVFEMENVNYQIDG-----KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQH 390 (635)
T ss_pred CCceEEEeeeEEEECC-----eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCc
Confidence 3457899999999973 3588888 8999999999999999999999999999998874 35566653
Q ss_pred cc-ccc---------CC--CCC-C------------CCCc-h--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCc
Q 005344 256 NE-IGG---------DG--DVP-H------------SGIG-R--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307 (701)
Q Consensus 256 ~E-Ia~---------~~--~ip-~------------~~ig-~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsg 307 (701)
.. +.. .. ... . +++. . .......|+|+|||++||++++.+|++||+||||++
T Consensus 391 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~ 470 (635)
T PRK11147 391 RAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTND 470 (635)
T ss_pred ccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 21 100 00 000 0 0110 0 112234688999999999999999999999999999
Q ss_pred ccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEe-CCeEEE
Q 005344 308 LEALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQIL-VGGIES 350 (701)
Q Consensus 308 LD~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~-~G~I~~ 350 (701)
||+.+...+ .+.+.+||++|||..++..+||+++.+. +|++..
T Consensus 471 LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~ 518 (635)
T PRK11147 471 LDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGR 518 (635)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEE
Confidence 999998655 3446699999999999999999999998 798743
No 272
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.86 E-value=1.4e-21 Score=191.32 Aligned_cols=158 Identities=23% Similarity=0.337 Sum_probs=120.8
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.|++.++++..+.. .+...+|+++ |+.||.++|+||+||||||||-.++|+..|++|.
T Consensus 6 ii~~~~l~ktvg~~-~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 6 IIEVHHLSKTVGQG-EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred eeehhhhhhhhcCC-CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 46788888888742 3556789988 8999999999999999999999999999999873
Q ss_pred ----EEEEEcCCcccc----cCC--CCCCC------------------CCchhhhcc----CCChhHHHHHHHHHHHccC
Q 005344 248 ----RVVIVDTSNEIG----GDG--DVPHS------------------GIGRARRMQ----VPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 ----rViiVd~~~EIa----~~~--~ip~~------------------~ig~~rr~~----v~s~G~qQRV~IArAL~~~ 295 (701)
+|++|+|+-.+- ... .+|-. .+|.-.++. -.++|+||||+||||++.+
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence 455555542110 000 00000 001111221 2478999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 296 PETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
|++|+.||||.+||......+ ++.|.|+|++|||..++ .-|++.+.+..|++
T Consensus 165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA-~Rc~R~~r~~~G~l 224 (228)
T COG4181 165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA-ARCDRQLRLRSGRL 224 (228)
T ss_pred CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH-Hhhhheeeeeccee
Confidence 999999999999999887554 67899999999999987 47999999999998
No 273
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.7e-21 Score=202.71 Aligned_cols=161 Identities=25% Similarity=0.293 Sum_probs=117.4
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC-----CCCCc-------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA-----DDHMK------------- 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs-----p~~Gk------------- 247 (701)
++.+.||+++|+. ..+|+++ |.+|++++|+|+|||||||||++|+|++. |+.|.
T Consensus 45 ~l~i~nl~~~~~~-----~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 45 KLSVEDLDVYYGD-----DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred eEEEEEEEEEeCC-----eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 5889999999973 3588887 89999999999999999999999999986 45664
Q ss_pred -------EEEEEcCCccccc--------CCCCCC-----------CCCc--hh---------h--------------hcc
Q 005344 248 -------RVVIVDTSNEIGG--------DGDVPH-----------SGIG--RA---------R--------------RMQ 276 (701)
Q Consensus 248 -------rViiVd~~~EIa~--------~~~ip~-----------~~ig--~~---------r--------------r~~ 276 (701)
+++++.+...+.. .....+ .... .. + ...
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 1233333211000 000000 0000 00 0 011
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcE-EEEeCCeEE
Q 005344 277 VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPS-LQILVGGIE 349 (701)
Q Consensus 277 v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drv-lvl~~G~I~ 349 (701)
-.++|++||++||++|+++|++||+|||+++||+.++..+ . ..+.++|++||+.+.+..+||++ +++..|++
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i- 278 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGEL- 278 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEE-
Confidence 2577999999999999999999999999999999998554 1 22589999999999999999997 46789998
Q ss_pred EEecCcH
Q 005344 350 SVTLGDE 356 (701)
Q Consensus 350 ~V~lgd~ 356 (701)
+..++.
T Consensus 279 -~~~g~~ 284 (305)
T PRK14264 279 -VEYDDT 284 (305)
T ss_pred -EEeCCH
Confidence 445554
No 274
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.86 E-value=2e-21 Score=192.19 Aligned_cols=143 Identities=24% Similarity=0.294 Sum_probs=103.7
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------- 256 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------- 256 (701)
+++.+|++.|+. ..+++++ +.+|++++|+||||||||||+++|+|++.|+.|. +.+++.+
T Consensus 1 l~~~~l~~~~~~-----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~~~~~~~~~~~ 73 (198)
T TIGR01189 1 LAARNLACSRGE-----RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGE--VRWNGTALAEQRDEPHR 73 (198)
T ss_pred CEEEEEEEEECC-----EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccE--EEECCEEcccchHHhhh
Confidence 468899999973 3688888 8999999999999999999999999999999885 3444321
Q ss_pred ccccCC----CCCCC---------------------------CCchh--hhccCCChhHHHHHHHHHHHccCCCEEEEcC
Q 005344 257 EIGGDG----DVPHS---------------------------GIGRA--RRMQVPNVNMQHSVMIEAVENHMPETIIIDE 303 (701)
Q Consensus 257 EIa~~~----~ip~~---------------------------~ig~~--rr~~v~s~G~qQRV~IArAL~~~PdVIILDE 303 (701)
.+++.. ..+.. ++... ....-.|+|++||++||++++.+|++||+||
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 153 (198)
T TIGR01189 74 NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDE 153 (198)
T ss_pred heEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 011100 00000 00000 0111247799999999999999999999999
Q ss_pred CCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEE
Q 005344 304 IGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSL 341 (701)
Q Consensus 304 PtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvl 341 (701)
|+++||+.+...+ ++.|.++|++||+... ..|++++
T Consensus 154 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~--~~~~~~~ 196 (198)
T TIGR01189 154 PTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG--LVEAREL 196 (198)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc--ccceEEe
Confidence 9999999988544 4568999999998743 3445443
No 275
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.86 E-value=3.5e-21 Score=242.09 Aligned_cols=163 Identities=18% Similarity=0.163 Sum_probs=126.9
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
.++++++|+|+|++ +...+|+++ |.+|++++|+||||||||||+|+|+|++.|++|. +.+++.+
T Consensus 1936 ~~L~v~nLsK~Y~~---~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~--I~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257 1936 DILRLNELTKVYSG---TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGD--ATVAGKSILTNISDV 2010 (2272)
T ss_pred ceEEEEEEEEEECC---CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccE--EEECCEECcchHHHH
Confidence 46899999999973 124689998 9999999999999999999999999999999886 4444321
Q ss_pred --ccccCCC----CCC-------------CCCc------------------h--hhhccCCChhHHHHHHHHHHHccCCC
Q 005344 257 --EIGGDGD----VPH-------------SGIG------------------R--ARRMQVPNVNMQHSVMIEAVENHMPE 297 (701)
Q Consensus 257 --EIa~~~~----ip~-------------~~ig------------------~--~rr~~v~s~G~qQRV~IArAL~~~Pd 297 (701)
.++++.. .+. .++. . .+...-.|+|+|||++||+|++++|+
T Consensus 2011 r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~ 2090 (2272)
T TIGR01257 2011 HQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP 2090 (2272)
T ss_pred hhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1111100 000 0000 0 01112357899999999999999999
Q ss_pred EEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 298 TIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 298 VIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
+||+||||+|||+.+++.+ ++.|.+||+|||++++++.+||++++|.+|++ +..|+..
T Consensus 2091 VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i--~~~Gs~q 2155 (2272)
T TIGR01257 2091 LVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAF--QCLGTIQ 2155 (2272)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCHH
Confidence 9999999999999999654 45699999999999999999999999999998 5566663
No 276
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.6e-21 Score=189.40 Aligned_cols=161 Identities=22% Similarity=0.386 Sum_probs=124.8
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
+.|.++|++|.||. ..+|-|+ ..+|+.+.++||+|+|||||+|.+.-+.-|.+|. ..|.+..
T Consensus 1 msirv~~in~~yg~-----~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~--l~ia~~~fd~s~~~~ 73 (242)
T COG4161 1 MSIQLNGINCFYGA-----HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT--LNIAGNHFDFSKTPS 73 (242)
T ss_pred CceEEccccccccc-----chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCe--EEecccccccccCcc
Confidence 35789999999983 4788888 6789999999999999999999999888888885 2222110
Q ss_pred c--c-------c----cCCCCCCC--------------CCch-------------------hhhcc-CCChhHHHHHHHH
Q 005344 257 E--I-------G----GDGDVPHS--------------GIGR-------------------ARRMQ-VPNVNMQHSVMIE 289 (701)
Q Consensus 257 E--I-------a----~~~~ip~~--------------~ig~-------------------~rr~~-v~s~G~qQRV~IA 289 (701)
+ | + .+...||. ++.. ++++. -.++|+||||+||
T Consensus 74 ~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaia 153 (242)
T COG4161 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIA 153 (242)
T ss_pred HHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHH
Confidence 0 0 0 00122332 1100 01121 1478999999999
Q ss_pred HHHccCCCEEEEcCCCCcccHHHH-------HHHHhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 290 AVENHMPETIIIDEIGTELEALAA-------STIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 290 rAL~~~PdVIILDEPtsgLD~~a~-------~~l~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
|||+|.|+||++||||.+||++-. +++.+.|+|-+++||..+.+...+.+++.|..|+| |+.|+..
T Consensus 154 ralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~i--ve~g~a~ 226 (242)
T COG4161 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHI--VEQGDAS 226 (242)
T ss_pred HHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCee--Eeecchh
Confidence 999999999999999999999865 44578899999999999999999999999999999 8888874
No 277
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.86 E-value=3.5e-21 Score=223.97 Aligned_cols=163 Identities=17% Similarity=0.219 Sum_probs=123.8
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
..++++|++++|+.. ...+|+++ +++|+.++|+|+||||||||++.|+|++.|+.|.
T Consensus 476 ~~I~~~~vsf~y~~~---~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 552 (710)
T TIGR03796 476 GYVELRNITFGYSPL---EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLA 552 (710)
T ss_pred CeEEEEEEEEecCCC---CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHH
Confidence 358999999999842 34689998 9999999999999999999999999999999885
Q ss_pred -EEEEEcCCccccc--------CC--CCCCC---------CCch---------h----hhccCCChhHHHHHHHHHHHcc
Q 005344 248 -RVVIVDTSNEIGG--------DG--DVPHS---------GIGR---------A----RRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 -rViiVd~~~EIa~--------~~--~ip~~---------~ig~---------~----rr~~v~s~G~qQRV~IArAL~~ 294 (701)
+|+++.|...+-. .+ ..... ++.. . ..-...|+||+||++||||+..
T Consensus 553 ~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 553 NSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred hheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 2334443321100 00 00000 0000 0 0011257899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+||||++||..+...+ .+.+.|+|++||..+.+.. +|+++++.+|++ +..|+.
T Consensus 633 ~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl~~G~i--~~~G~~ 695 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVLERGKV--VQRGTH 695 (710)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEeCCEE--EEecCH
Confidence 9999999999999999988554 5679999999999998865 999999999999 555654
No 278
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.86 E-value=7.2e-21 Score=215.95 Aligned_cols=158 Identities=20% Similarity=0.260 Sum_probs=121.9
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEcCCc
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVDTSN 256 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd~~~ 256 (701)
+.++++.+|+++|+. ..+|+++ |.+|++++|+|||||||||||++|+|++.|++|. +|+++.+..
T Consensus 320 ~~~l~~~~l~~~~~~-----~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~ 394 (552)
T TIGR03719 320 DKVIEAENLSKGFGD-----KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSR 394 (552)
T ss_pred CeEEEEeeEEEEECC-----eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCc
Confidence 457999999999973 3588888 8999999999999999999999999999998874 356666642
Q ss_pred c-cc-cC--------C----CCCC-----------CCCch---hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcc
Q 005344 257 E-IG-GD--------G----DVPH-----------SGIGR---ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTEL 308 (701)
Q Consensus 257 E-Ia-~~--------~----~ip~-----------~~ig~---~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgL 308 (701)
. .. .. . .... .++.. .+...-.|+|||||++||++++++|++||+||||++|
T Consensus 395 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~L 474 (552)
T TIGR03719 395 DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDL 474 (552)
T ss_pred cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 1 10 00 0 0000 01100 0112235789999999999999999999999999999
Q ss_pred cHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeC-CeEE
Q 005344 309 EALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILV-GGIE 349 (701)
Q Consensus 309 D~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~-G~I~ 349 (701)
|+.++..+ .+.+.+||++||+.+++..+||+++++.. |++.
T Consensus 475 D~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 475 DVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 99998665 34345899999999999999999999987 4663
No 279
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.86 E-value=8.1e-21 Score=199.55 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=119.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----EEEEEcCCccccc
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-----RVVIVDTSNEIGG 260 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-----rViiVd~~~EIa~ 260 (701)
.++++++++. + ..+|+++ +.+|++++|+|+||||||||+++|+|+++|+.|+ +|.++.+...+..
T Consensus 39 ~l~i~nls~~-~------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~ 111 (282)
T cd03291 39 NLFFSNLCLV-G------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111 (282)
T ss_pred eEEEEEEEEe-c------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc
Confidence 4679999885 2 2588888 8999999999999999999999999999999885 2556665432210
Q ss_pred C--------C-CCCC---------CCCchh-h------------hccCCChhHHHHHHHHHHHccCCCEEEEcCCCCccc
Q 005344 261 D--------G-DVPH---------SGIGRA-R------------RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELE 309 (701)
Q Consensus 261 ~--------~-~ip~---------~~ig~~-r------------r~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD 309 (701)
. . .... .++... . .....|+|++||++||++++.+|++||+|||+++||
T Consensus 112 ~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD 191 (282)
T cd03291 112 GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191 (282)
T ss_pred cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 0 0 0000 001000 0 012467899999999999999999999999999999
Q ss_pred HHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 310 ALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 310 ~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+.+...+ ...|.+||++||+...+. .||+++++.+|++ +..++.
T Consensus 192 ~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i--~~~g~~ 242 (282)
T cd03291 192 VFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSS--YFYGTF 242 (282)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCEE--EEECCH
Confidence 9987533 124889999999999885 7999999999998 445554
No 280
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.86 E-value=5.9e-21 Score=221.41 Aligned_cols=160 Identities=19% Similarity=0.303 Sum_probs=122.6
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC----------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS---------- 255 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~---------- 255 (701)
.++++||+++|+.. ...+|+++ +++|+.++|+|+||||||||++.|+|++.|++|+ +.+|+.
T Consensus 451 ~I~~~nvsf~Y~~~---~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~--I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 451 AIEVDRVTFRYRPD---GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS--VFYDGQDLAGLDVQAV 525 (686)
T ss_pred eEEEEEEEEEcCCC---CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE--EEECCEEcCcCCHHHH
Confidence 58899999999631 34689998 9999999999999999999999999999999986 455543
Q ss_pred ----------ccccc--------CCC-CCC---------CCCchh-hh------c------cCCChhHHHHHHHHHHHcc
Q 005344 256 ----------NEIGG--------DGD-VPH---------SGIGRA-RR------M------QVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 256 ----------~EIa~--------~~~-ip~---------~~ig~~-rr------~------~v~s~G~qQRV~IArAL~~ 294 (701)
..+-. .+. ... .++... .. . .-.|+|||||++||||+..
T Consensus 526 r~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~ 605 (686)
T TIGR03797 526 RRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR 605 (686)
T ss_pred HhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 21100 000 000 000000 00 0 1247899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+||||++||+.+.+.+ .+.+.|+|++||..+.+. .+|+++++.+|++ ++.|+.
T Consensus 606 ~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~-~~D~Iivl~~G~i--v~~G~~ 668 (686)
T TIGR03797 606 KPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIR-NADRIYVLDAGRV--VQQGTY 668 (686)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHH-cCCEEEEEECCEE--EEECCH
Confidence 9999999999999999988655 455899999999998886 4999999999999 556665
No 281
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.86 E-value=4.1e-21 Score=196.96 Aligned_cols=143 Identities=18% Similarity=0.263 Sum_probs=104.8
Q ss_pred eeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-----------ccccCCC----CCC----
Q 005344 209 IICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-----------EIGGDGD----VPH---- 266 (701)
Q Consensus 209 ~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-----------EIa~~~~----ip~---- 266 (701)
+|+++ +.+|++++|+|+||||||||+++|+|++++ .|. +.+++.. .+++... .+.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~--i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGS--IQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeE--EEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 56666 889999999999999999999999999864 564 3333321 0110000 000
Q ss_pred --------C------------------CCch--hhhccCCChhHHHHHHHHHHHcc-------CCCEEEEcCCCCcccHH
Q 005344 267 --------S------------------GIGR--ARRMQVPNVNMQHSVMIEAVENH-------MPETIIIDEIGTELEAL 311 (701)
Q Consensus 267 --------~------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~-------~PdVIILDEPtsgLD~~ 311 (701)
. ++.. .....-.|+|++||++||++++. +|++||+|||+++||+.
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~ 167 (248)
T PRK03695 88 QYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVA 167 (248)
T ss_pred HHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHH
Confidence 0 0000 00112247799999999999997 67999999999999999
Q ss_pred HHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 312 AASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 312 a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++..+ ++.|.|+|++||+.+++..+||+++++.+|++ +..+..
T Consensus 168 ~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i--~~~g~~ 217 (248)
T PRK03695 168 QQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKL--LASGRR 217 (248)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEECCH
Confidence 88544 44689999999999999999999999999998 444444
No 282
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.86 E-value=5.4e-21 Score=213.06 Aligned_cols=154 Identities=18% Similarity=0.286 Sum_probs=123.9
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc-------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE------- 257 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E------- 257 (701)
..+++.|++|+|+ ...+|+++ +.+||+++|+|.||||||||+|+|+|.+.|++|. +++++...
T Consensus 7 ~ll~~~~i~K~Fg-----gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~--I~~~G~~~~~~sp~~ 79 (500)
T COG1129 7 PLLELRGISKSFG-----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE--ILIDGKPVAFSSPRD 79 (500)
T ss_pred ceeeeecceEEcC-----CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCce--EEECCEEccCCCHHH
Confidence 4678999999998 45899998 9999999999999999999999999999999997 66665421
Q ss_pred ------------cc-----------cCCCCCCCCCc---hh----------hhc----------cCCChhHHHHHHHHHH
Q 005344 258 ------------IG-----------GDGDVPHSGIG---RA----------RRM----------QVPNVNMQHSVMIEAV 291 (701)
Q Consensus 258 ------------Ia-----------~~~~ip~~~ig---~~----------rr~----------~v~s~G~qQRV~IArA 291 (701)
+. +.+..|....+ .. .++ .-.+.++||.|.||+|
T Consensus 80 A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArA 159 (500)
T COG1129 80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARA 159 (500)
T ss_pred HHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHH
Confidence 00 01111211111 00 111 1135699999999999
Q ss_pred HccCCCEEEEcCCCCcccHHHHH-------HHHhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 292 ENHMPETIIIDEIGTELEALAAS-------TIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 292 L~~~PdVIILDEPtsgLD~~a~~-------~l~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+..++++||+||||+.|+..... .++++|+++|++||.++++..+||++.+|.+|++
T Consensus 160 l~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~ 223 (500)
T COG1129 160 LSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRV 223 (500)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEE
Confidence 99999999999999999998774 3478999999999999999999999999999997
No 283
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=2.4e-21 Score=200.66 Aligned_cols=145 Identities=22% Similarity=0.293 Sum_probs=111.5
Q ss_pred ceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----------ccccC-C-----------
Q 005344 208 EIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN----------EIGGD-G----------- 262 (701)
Q Consensus 208 ~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~----------EIa~~-~----------- 262 (701)
.++.|+ |.+|++++++|+||+||||+||+|.|++.|++|+ +-|.+.. .++.. +
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~--v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGK--VRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCe--EEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 356666 7899999999999999999999999999999997 4443321 01000 0
Q ss_pred -----------CCCC-------------CCCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH
Q 005344 263 -----------DVPH-------------SGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI 316 (701)
Q Consensus 263 -----------~ip~-------------~~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l 316 (701)
.+|. .+++. ..++.-.|.|++.|+-||++|.|.|+||++||||-|||+.++..+
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i 195 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence 0000 01111 112233578999999999999999999999999999999998554
Q ss_pred --------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 317 --------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 317 --------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
.+++.||+.|||+++-+..+|++++.++.|++ +.-|+-
T Consensus 196 r~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gql--v~dg~l 241 (325)
T COG4586 196 REFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQL--VFDGTL 241 (325)
T ss_pred HHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcE--eecccH
Confidence 46799999999999999999999999999998 545544
No 284
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.86 E-value=9.1e-21 Score=190.66 Aligned_cols=141 Identities=19% Similarity=0.130 Sum_probs=104.5
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEE-EcCCcc-cccC-CCCCCC-------------CCch------
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVI-VDTSNE-IGGD-GDVPHS-------------GIGR------ 271 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrVii-Vd~~~E-Ia~~-~~ip~~-------------~ig~------ 271 (701)
+.+|++++|+||||||||||+++|+|++.|++|. +. +++..- +... ...+.. +...
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~--i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~ 87 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGD--FIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHF 87 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCC--EEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHH
Confidence 6689999999999999999999999999999998 32 343210 1100 001110 0000
Q ss_pred -----------hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHH
Q 005344 272 -----------ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDN 334 (701)
Q Consensus 272 -----------~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~ 334 (701)
.....-.++|||||++||++++++|++||+|||++++|+.+...+ . ..+.++|++||++..+.
T Consensus 88 ~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~ 167 (213)
T PRK15177 88 CYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIK 167 (213)
T ss_pred HHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHH
Confidence 011123477999999999999999999999999999999887433 1 23578999999999999
Q ss_pred HhcCcEEEEeCCeEEEEecCcHHH
Q 005344 335 IVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 335 ~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
.+||+++++.+|++ +..++...
T Consensus 168 ~~~d~i~~l~~G~i--~~~~~~~~ 189 (213)
T PRK15177 168 EHCHAFGVLLHGKI--TMCEDLAQ 189 (213)
T ss_pred HhcCeeEEEECCeE--EEeCCHHH
Confidence 99999999999998 44555433
No 285
>PLN03073 ABC transporter F family; Provisional
Probab=99.86 E-value=6.6e-21 Score=222.59 Aligned_cols=159 Identities=14% Similarity=0.179 Sum_probs=123.0
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEcCCc
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVDTSN 256 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd~~~ 256 (701)
..++++.+|+++|+. ...+|+++ |.+|++++|+||||||||||||+|+|++.|+.|. +|+++++..
T Consensus 506 ~~~L~~~~ls~~y~~----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~ 581 (718)
T PLN03073 506 PPIISFSDASFGYPG----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHH 581 (718)
T ss_pred CceEEEEeeEEEeCC----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccc
Confidence 357899999999962 23578888 8999999999999999999999999999998874 356666542
Q ss_pred cccc-C---------CCCCC------------CCCch---hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHH
Q 005344 257 EIGG-D---------GDVPH------------SGIGR---ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEAL 311 (701)
Q Consensus 257 EIa~-~---------~~ip~------------~~ig~---~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~ 311 (701)
.... . ...+. .++.. .+.....|+|||||++||++++++|++||+||||++||+.
T Consensus 582 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~ 661 (718)
T PLN03073 582 VDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLD 661 (718)
T ss_pred cccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 1000 0 00000 11110 1122346889999999999999999999999999999999
Q ss_pred HHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 312 AASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 312 a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+...+ .+.+.+||++||+..++..+||+++++.+|++.
T Consensus 662 s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 662 AVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 88655 333459999999999999999999999999983
No 286
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.86 E-value=4.7e-21 Score=217.64 Aligned_cols=162 Identities=15% Similarity=0.197 Sum_probs=120.8
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.++++|++++|+. +...+|+++ +++|+.++|+|+||||||||++.|+|++.|+.|+
T Consensus 341 ~i~~~~vsf~y~~---~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 417 (582)
T PRK11176 341 DIEFRNVTFTYPG---KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRN 417 (582)
T ss_pred eEEEEEEEEecCC---CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHh
Confidence 5899999999963 134688988 8999999999999999999999999999999885
Q ss_pred EEEEEcCCcccc--------cCCCCCCC------------CCchh-h------hc------cCCChhHHHHHHHHHHHcc
Q 005344 248 RVVIVDTSNEIG--------GDGDVPHS------------GIGRA-R------RM------QVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 rViiVd~~~EIa--------~~~~ip~~------------~ig~~-r------r~------~v~s~G~qQRV~IArAL~~ 294 (701)
+|++++|...+- ..+..+.. ++... . .. .-.|+|++||++|||++..
T Consensus 418 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 418 QVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred hceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 223333321110 00000000 00000 0 00 1257899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+||||++||+.+...+ . ..+.|+|++||+.+... .||+++.+.+|++ ++.|+.
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i--~e~g~~ 562 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEI--VERGTH 562 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEE--EEeCCH
Confidence 9999999999999999988655 2 25799999999998775 5999999999998 555554
No 287
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.86 E-value=1.3e-20 Score=214.17 Aligned_cols=158 Identities=19% Similarity=0.256 Sum_probs=121.4
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEcCCc
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVDTSN 256 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd~~~ 256 (701)
+.++++.+|++.|+. ..+|+++ |.+|++++|+||||||||||+++|+|++.|+.|. +|+++.+..
T Consensus 322 ~~~l~~~~l~~~~~~-----~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~ 396 (556)
T PRK11819 322 DKVIEAENLSKSFGD-----RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSR 396 (556)
T ss_pred CeEEEEEeEEEEECC-----eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCch
Confidence 457999999999973 3588888 9999999999999999999999999999998874 355666542
Q ss_pred -cccc-C--------C----CCCC-----------CCCch---hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcc
Q 005344 257 -EIGG-D--------G----DVPH-----------SGIGR---ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTEL 308 (701)
Q Consensus 257 -EIa~-~--------~----~ip~-----------~~ig~---~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgL 308 (701)
.+.. . . .... .++.. .+...-.|+||+||++||++++.+|++||+||||++|
T Consensus 397 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~L 476 (556)
T PRK11819 397 DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDL 476 (556)
T ss_pred hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 1100 0 0 0000 01110 0112335789999999999999999999999999999
Q ss_pred cHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeC-CeEE
Q 005344 309 EALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILV-GGIE 349 (701)
Q Consensus 309 D~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~-G~I~ 349 (701)
|+.++..+ .+.+.++|++||+.+++..+||+++++.+ |.+.
T Consensus 477 D~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 477 DVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 99998665 33334899999999999999999999986 6663
No 288
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.86 E-value=4.3e-21 Score=214.26 Aligned_cols=159 Identities=19% Similarity=0.214 Sum_probs=116.6
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-CCCc---------------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-DHMK--------------- 247 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-~~Gk--------------- 247 (701)
+.+++++|+++.|+. ..+|+++ +.+|++++|+||||||||||+|+|+|++++ +.|+
T Consensus 258 ~~~l~~~~l~~~~~~-----~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~ 332 (490)
T PRK10938 258 EPRIVLNNGVVSYND-----RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIW 332 (490)
T ss_pred CceEEEeceEEEECC-----eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHH
Confidence 457999999999973 3588888 899999999999999999999999998765 4554
Q ss_pred ----EEEEEcCCccccc-C----------CCCC---------C------------CCCch-h--hhccCCChhHHHHHHH
Q 005344 248 ----RVVIVDTSNEIGG-D----------GDVP---------H------------SGIGR-A--RRMQVPNVNMQHSVMI 288 (701)
Q Consensus 248 ----rViiVd~~~EIa~-~----------~~ip---------~------------~~ig~-~--rr~~v~s~G~qQRV~I 288 (701)
+++++.+...... . .... . .++.. . +...-.|+|||||++|
T Consensus 333 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 412 (490)
T PRK10938 333 DIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALI 412 (490)
T ss_pred HHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHH
Confidence 1333332210000 0 0000 0 00000 0 0112247799999999
Q ss_pred HHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcC-CEEEEEEcChhHHHH-hcCcEEEEeCCeEEE
Q 005344 289 EAVENHMPETIIIDEIGTELEALAASTI-------AQRG-VQLVGTAHGMTIDNI-VKNPSLQILVGGIES 350 (701)
Q Consensus 289 ArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~G-vtVIiTTHd~~l~~~-l~drvlvl~~G~I~~ 350 (701)
|++++.+|++||+||||++||+.++..+ ++.| .+||++||+.+++.. +||+++++.+|++..
T Consensus 413 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~ 483 (490)
T PRK10938 413 VRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYR 483 (490)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEE
Confidence 9999999999999999999999998655 3344 579999999999976 699999999999743
No 289
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.85 E-value=1e-20 Score=190.96 Aligned_cols=140 Identities=20% Similarity=0.284 Sum_probs=103.5
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------------EEEEEcCCccccc---C--------C------C
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------------RVVIVDTSNEIGG---D--------G------D 263 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------------rViiVd~~~EIa~---~--------~------~ 263 (701)
+.+|++++|+|+||||||||+++|+|++.|++|. +++++.+...... . . .
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~ 82 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGW 82 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccccc
Confidence 5689999999999999999999999999998874 2344433321100 0 0 0
Q ss_pred CCCCCCch-------hhh----------ccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hhc
Q 005344 264 VPHSGIGR-------ARR----------MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQR 319 (701)
Q Consensus 264 ip~~~ig~-------~rr----------~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~ 319 (701)
........ ... ..-.|+||+||++|+++++++|++||+|||+++||+.++..+ ++.
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~ 162 (223)
T TIGR03771 83 LRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA 162 (223)
T ss_pred ccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 00000000 001 112467999999999999999999999999999999998544 456
Q ss_pred CCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 320 GVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 320 GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|.|+|++||+.+.+..+||+++++ +|++. ..++.
T Consensus 163 ~~tvii~sH~~~~~~~~~d~i~~l-~G~i~--~~~~~ 196 (223)
T TIGR03771 163 GTAILMTTHDLAQAMATCDRVVLL-NGRVI--ADGTP 196 (223)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEE-CCEEE--eecCH
Confidence 999999999999999999999998 89983 34443
No 290
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.85 E-value=7.8e-21 Score=214.81 Aligned_cols=158 Identities=18% Similarity=0.284 Sum_probs=125.7
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEcCCcc
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVDTSNE 257 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd~~~E 257 (701)
.+|.+.+|++.|+ ...+++++ +.+|+.+||||+||||||||||+|+|.+.|+.|. +|.++.|...
T Consensus 2 ~~i~~~~ls~~~g-----~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~ 76 (530)
T COG0488 2 SMITLENLSLAYG-----DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP 76 (530)
T ss_pred ceEEEeeeEEeeC-----CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCC
Confidence 4688999999997 35788888 8999999999999999999999999999998874 6777776532
Q ss_pred cccC---------CC----------------CCC-----------------------------CCCch---hhhccCCCh
Q 005344 258 IGGD---------GD----------------VPH-----------------------------SGIGR---ARRMQVPNV 280 (701)
Q Consensus 258 Ia~~---------~~----------------ip~-----------------------------~~ig~---~rr~~v~s~ 280 (701)
.... +. .+. .+++. ...+.-.|+
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSG 156 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSG 156 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCH
Confidence 2100 00 000 01111 123344688
Q ss_pred hHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH----Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEE
Q 005344 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI----AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESV 351 (701)
Q Consensus 281 G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V 351 (701)
|+|.|++||++|..+||+|+|||||++||..+..-+ .+ .| ++|++|||..+.+.+|+.++-+..|.+...
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y 231 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPY 231 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEe
Confidence 999999999999999999999999999999998544 33 46 999999999999999999999999988654
No 291
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.85 E-value=8.1e-21 Score=204.73 Aligned_cols=186 Identities=19% Similarity=0.276 Sum_probs=137.0
Q ss_pred ccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC-----C------------
Q 005344 186 RNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADD-----H------------ 245 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~-----~------------ 245 (701)
.+..+.+.||++.|... .|...+++++ |..||.++|+|.+|||||-+.+.|.++++.. +
T Consensus 3 ~~~lL~v~nLsV~f~~~-~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 3 TMPLLSIRNLSVAFHQE-GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred CCcceeeeccEEEEecC-CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 34567899999999743 3566789998 8999999999999999999999999999752 1
Q ss_pred ----------CcEEEEEcCCcccccC-----------CCCCCCC------------------Cch-hhhc----cCCChh
Q 005344 246 ----------MKRVVIVDTSNEIGGD-----------GDVPHSG------------------IGR-ARRM----QVPNVN 281 (701)
Q Consensus 246 ----------GkrViiVd~~~EIa~~-----------~~ip~~~------------------ig~-~rr~----~v~s~G 281 (701)
|.+|..|++.+..... ....|.+ +.. .+++ .-.|+|
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGG 161 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGG 161 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcc
Confidence 2345555554321100 0000001 110 0111 124789
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEec
Q 005344 282 MQHSVMIEAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTL 353 (701)
Q Consensus 282 ~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~l 353 (701)
++||||||+||+.+|++||.||||++||+..+.++ ++.|..++++|||+.++..++|++++|..|.+ |+.
T Consensus 162 qRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i--vE~ 239 (534)
T COG4172 162 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI--VET 239 (534)
T ss_pred hhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE--eec
Confidence 99999999999999999999999999999887554 56799999999999999999999999999999 778
Q ss_pred CcHHHHhhhhHHHHhhccCCCcceeeeee
Q 005344 354 GDEEAKKRKVQKTILERKGPPTFTCAVEM 382 (701)
Q Consensus 354 gd~~a~~r~~qe~Iler~~~p~f~~~vev 382 (701)
|..+ .++..+.+||.+.++..
T Consensus 240 ~~t~--------~lF~~PqHpYTr~Ll~a 260 (534)
T COG4172 240 GTTE--------TLFAAPQHPYTRKLLAA 260 (534)
T ss_pred CcHH--------HHhhCCCChHHHHHHhc
Confidence 7763 34455555555544443
No 292
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.85 E-value=1.5e-20 Score=236.52 Aligned_cols=163 Identities=17% Similarity=0.176 Sum_probs=125.1
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN------- 256 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~------- 256 (701)
...+++++|+++|+. +...+++++ +.+|++++|+|||||||||||++|+|++.|++|+ +++++.+
T Consensus 926 ~~~L~I~nLsK~y~~---~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~--I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP---SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGT--VLVGGKDIETNLDA 1000 (2272)
T ss_pred CceEEEEeEEEEecC---CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceE--EEECCEECcchHHH
Confidence 347899999999962 134689998 8999999999999999999999999999999886 4444321
Q ss_pred ---ccccCC----CCCCC-------------CC------------------chh--hhccCCChhHHHHHHHHHHHccCC
Q 005344 257 ---EIGGDG----DVPHS-------------GI------------------GRA--RRMQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 257 ---EIa~~~----~ip~~-------------~i------------------g~~--rr~~v~s~G~qQRV~IArAL~~~P 296 (701)
.++.+. ..+.. +. ... +...-.|+|||||++||+|++.+|
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~P 1080 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA 1080 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 011110 00000 00 000 011225789999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 297 ETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++||+||||++||+.+++.+ ...|.+||+|||++++++.+||+++++.+|++ +..|+.
T Consensus 1081 kVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL--~~~Gs~ 1144 (2272)
T TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRL--YCSGTP 1144 (2272)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEecCH
Confidence 99999999999999998655 23589999999999999999999999999998 445555
No 293
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.85 E-value=1.4e-20 Score=214.23 Aligned_cols=160 Identities=17% Similarity=0.206 Sum_probs=119.6
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.++++|+++.|.. ...+|+++ +++|+.++|+||+|||||||++.|+|++ |+.|+
T Consensus 349 ~i~~~~vsf~~~~----~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~ 423 (588)
T PRK11174 349 TIEAEDLEILSPD----GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRK 423 (588)
T ss_pred eEEEEeeEEeccC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHh
Confidence 4889999976642 24689988 8999999999999999999999999999 88875
Q ss_pred EEEEEcCCcccccC-------CCCCCC------------CC---------chh----hhccCCChhHHHHHHHHHHHccC
Q 005344 248 RVVIVDTSNEIGGD-------GDVPHS------------GI---------GRA----RRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 rViiVd~~~EIa~~-------~~ip~~------------~i---------g~~----rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
+|.++.|...+-.. -..+.. ++ |.. .+-.-.|+|||||++||||+..+
T Consensus 424 ~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~ 503 (588)
T PRK11174 424 HLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP 503 (588)
T ss_pred heEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence 23444443221000 000100 00 000 00012578999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 296 PETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||+||||++||..+.+.+ . ..+.|+|++||..+.+. .+|+++++.+|++ ++.|+-
T Consensus 504 ~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i--~e~G~~ 567 (588)
T PRK11174 504 CQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQI--VQQGDY 567 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hCCEEEEEeCCeE--eecCCH
Confidence 999999999999999998665 2 25899999999998875 5999999999998 556654
No 294
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.85 E-value=1.7e-20 Score=213.78 Aligned_cols=159 Identities=17% Similarity=0.242 Sum_probs=121.0
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC-----------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT----------- 254 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~----------- 254 (701)
.+++++++++|+. ...+|+++ +++|+.++|+|+||||||||++.|+|++.|+.|. +.+|+
T Consensus 340 ~i~~~~v~f~y~~----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~--I~idg~~i~~~~~~~l 413 (592)
T PRK10790 340 RIDIDNVSFAYRD----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE--IRLDGRPLSSLSHSVL 413 (592)
T ss_pred eEEEEEEEEEeCC----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce--EEECCEEhhhCCHHHH
Confidence 5889999999973 23589998 9999999999999999999999999999999886 44444
Q ss_pred ---------Ccccc---------cCCCCCC---------CCCchh-h------------hccCCChhHHHHHHHHHHHcc
Q 005344 255 ---------SNEIG---------GDGDVPH---------SGIGRA-R------------RMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 255 ---------~~EIa---------~~~~ip~---------~~ig~~-r------------r~~v~s~G~qQRV~IArAL~~ 294 (701)
...+- ....... .++... . .-...|+|++||++||||+..
T Consensus 414 ~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~ 493 (592)
T PRK10790 414 RQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ 493 (592)
T ss_pred HhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 32110 0000000 000000 0 011257899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+||||++||+.+.+.+ . ..++|+|++||...... .||+++++.+|++ +..|+.
T Consensus 494 ~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i--~~~G~~ 558 (592)
T PRK10790 494 TPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQA--VEQGTH 558 (592)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEE--EEEcCH
Confidence 9999999999999999998655 2 24799999999998876 5999999999999 555554
No 295
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.85 E-value=1.8e-20 Score=217.56 Aligned_cols=162 Identities=15% Similarity=0.194 Sum_probs=122.3
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.++++|++++|+.. ...+|+++ +++|+.++|+|+||||||||++.|+|++.|+.|.
T Consensus 463 ~I~~~~vsf~Y~~~---~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 463 EIEFRNVSFAYPGQ---ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539 (694)
T ss_pred eEEEEEEEEEeCCC---CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHh
Confidence 58899999999731 34589998 9999999999999999999999999999999985
Q ss_pred EEEEEcCCccccc--------CC--CCCC---------CCCc---------hh----hhccCCChhHHHHHHHHHHHccC
Q 005344 248 RVVIVDTSNEIGG--------DG--DVPH---------SGIG---------RA----RRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 rViiVd~~~EIa~--------~~--~ip~---------~~ig---------~~----rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
.|++++|...+-. .+ .... .++. .. ..-...|+||+||++|||++..+
T Consensus 540 ~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~ 619 (694)
T TIGR03375 540 NIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619 (694)
T ss_pred ccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 2333333321100 00 0000 0000 00 00113578999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 296 PETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||+||||++||+.+.+.+ ...+.|+|++||..+.. ..||+++++.+|++ ++.|+.
T Consensus 620 p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~-~~~D~iivl~~G~i--~e~G~~ 683 (694)
T TIGR03375 620 PPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLL-DLVDRIIVMDNGRI--VADGPK 683 (694)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HhCCEEEEEeCCEE--EeeCCH
Confidence 999999999999999998655 23479999999999987 57999999999999 656665
No 296
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.85 E-value=1.6e-20 Score=219.22 Aligned_cols=161 Identities=15% Similarity=0.255 Sum_probs=121.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
.++++|++++|+.. ....+|+++ +++|+.++|+||||||||||++.|+|++.|++|+ +.+|+.+
T Consensus 478 ~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~--I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 478 LIEFQDVSFSYPNR--PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ--VLLDGVPLVQYDHHYL 553 (711)
T ss_pred eEEEEEEEEECCCC--CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE--EEECCEEHHhcCHHHH
Confidence 58999999999731 124689998 9999999999999999999999999999999886 4555421
Q ss_pred --ccccCCCC----------------CCC------------CCch---------h----hhccCCChhHHHHHHHHHHHc
Q 005344 257 --EIGGDGDV----------------PHS------------GIGR---------A----RRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 257 --EIa~~~~i----------------p~~------------~ig~---------~----rr~~v~s~G~qQRV~IArAL~ 293 (701)
.++...+. +.. ++.. . ..-...|+|||||++|||++.
T Consensus 554 r~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 554 HRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred HhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 01100000 000 0000 0 001125789999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHHH----hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 294 HMPETIIIDEIGTELEALAASTIA----QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l~----e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
.+|++||+||||++||+.....+. ..+.|+|++||..+... .+|+++++.+|++ ++.|+.
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~i--ve~Gt~ 697 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-RADQILVLKKGSV--VEMGTH 697 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-hCCEEEEEECCEE--EEeeCH
Confidence 999999999999999998876652 35789999999999875 5999999999999 556664
No 297
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.85 E-value=2e-20 Score=213.32 Aligned_cols=161 Identities=18% Similarity=0.255 Sum_probs=121.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.+++++++++|+. ...+|+++ +++|+.++|+|+||||||||++.|+|++.|+.|.
T Consensus 334 ~I~~~~vsf~y~~----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 409 (588)
T PRK13657 334 AVEFDDVSFSYDN----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRR 409 (588)
T ss_pred eEEEEEEEEEeCC----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHh
Confidence 5899999999972 23589998 8999999999999999999999999999999885
Q ss_pred EEEEEcCCccccc--------CC--CCCCC---------CCch---------h----hhccCCChhHHHHHHHHHHHccC
Q 005344 248 RVVIVDTSNEIGG--------DG--DVPHS---------GIGR---------A----RRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 rViiVd~~~EIa~--------~~--~ip~~---------~ig~---------~----rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
+|.++.+...+-. .+ ..... ++.. . ..-...|+|++||++|||++.++
T Consensus 410 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 410 NIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred heEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 3444444322100 00 00000 0000 0 00012578999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 296 PETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||+||||++||+.+...+ . ..++|+|++||+.+... .+|+++.+.+|++ +..|+.
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i--~~~g~~ 553 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRV--VESGSF 553 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEE--EEeCCH
Confidence 999999999999999998655 2 24799999999998874 6999999999998 445554
No 298
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.85 E-value=2.2e-20 Score=211.27 Aligned_cols=162 Identities=17% Similarity=0.259 Sum_probs=120.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.++++|++++|+. +...+++++ +++|+.++|+||||||||||+++|+|++.|+.|.
T Consensus 316 ~i~~~~v~~~y~~---~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 316 HLSVENVTIVPPG---GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred eEEEEEEEEEcCC---CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 5899999999963 134688888 8999999999999999999999999999999885
Q ss_pred EEEEEcCCccccc--------CCC--CCCC---------CCch---------h----hhccCCChhHHHHHHHHHHHccC
Q 005344 248 RVVIVDTSNEIGG--------DGD--VPHS---------GIGR---------A----RRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 rViiVd~~~EIa~--------~~~--ip~~---------~ig~---------~----rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
.+.++++...+-. ... .... ++.. . ..-...|+||+||++|||++..+
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 2333333321100 000 0000 0000 0 01112578999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 296 PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||+||||++||+.+...+ ...|.|+|++||+.+.. ..||+++.+.+|++ +..|+.
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~i~~l~~G~i--~~~g~~ 537 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDKILVLQDGRI--ARFGER 537 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEE--EeeCCH
Confidence 999999999999999988655 22589999999999876 46999999999998 555554
No 299
>PRK13409 putative ATPase RIL; Provisional
Probab=99.84 E-value=3e-20 Score=212.96 Aligned_cols=155 Identities=18% Similarity=0.215 Sum_probs=117.7
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----EEEEEcCCccc
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-----RVVIVDTSNEI 258 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-----rViiVd~~~EI 258 (701)
..++++.+++++|+.. .|+++ +.+|++++|+||||||||||+|+|+|++.|+.|. ++.++.+....
T Consensus 338 ~~~l~~~~ls~~~~~~------~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~ 411 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF------SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKP 411 (590)
T ss_pred ceEEEEcceEEEECCE------EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccC
Confidence 3468999999999732 35554 8999999999999999999999999999999885 24555554221
Q ss_pred ccC---------C--CCC----------CCCCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHH
Q 005344 259 GGD---------G--DVP----------HSGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST 315 (701)
Q Consensus 259 a~~---------~--~ip----------~~~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~ 315 (701)
... . ... ..++.. .+...-.|+|+|||++||++++++|++||+||||++||+.++..
T Consensus 412 ~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~ 491 (590)
T PRK13409 412 DYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLA 491 (590)
T ss_pred CCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 100 0 000 001110 01223368899999999999999999999999999999999855
Q ss_pred H-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 316 I-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 316 l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+ + +.|.++|++|||..++..+||+++++. |++
T Consensus 492 l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~ 531 (590)
T PRK13409 492 VAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEP 531 (590)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccc
Confidence 4 2 348999999999999999999999985 455
No 300
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=1.6e-20 Score=185.57 Aligned_cols=139 Identities=17% Similarity=0.187 Sum_probs=102.5
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc-------c
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------I 258 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------I 258 (701)
++++++++++|+. ..+++ + +.+|++++|+|+||||||||+++|+|++.|+.|. +++++.+- +
T Consensus 1 ~l~~~~l~~~~~~-----~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 1 MLSLHQLQFNIEQ-----KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGN--IYYKNCNINNIAKPYC 72 (195)
T ss_pred CeEEEEeeEEECC-----cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE--EEECCcccChhhhhhE
Confidence 3679999999973 23343 6 8899999999999999999999999999999987 55555320 1
Q ss_pred ccCCC---C-CCC--------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCC
Q 005344 259 GGDGD---V-PHS--------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306 (701)
Q Consensus 259 a~~~~---i-p~~--------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPts 306 (701)
++... + +.. ++.. .+...-.|+|++||++|+++++.+|++||+|||++
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~ 152 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVET 152 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 11100 0 000 0000 00111246799999999999999999999999999
Q ss_pred cccHHHHHHH-------HhcCCEEEEEEcChhHHHH
Q 005344 307 ELEALAASTI-------AQRGVQLVGTAHGMTIDNI 335 (701)
Q Consensus 307 gLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~ 335 (701)
+||+.+...+ .+.|.++|++||+...+..
T Consensus 153 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 153 NLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 9999998544 3468999999999876643
No 301
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.84 E-value=2.1e-20 Score=217.51 Aligned_cols=161 Identities=14% Similarity=0.230 Sum_probs=121.6
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.+++++++++|+. ...+|+++ +++|+.++|+|+||||||||++.|+|++.|+.|+
T Consensus 473 ~I~~~~vsf~y~~----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 548 (708)
T TIGR01193 473 DIVINDVSYSYGY----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548 (708)
T ss_pred cEEEEEEEEEcCC----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHH
Confidence 5889999999972 34689998 9999999999999999999999999999999885
Q ss_pred EEEEEcCCccccc--------CCCCCCC------------CCchh-h------hc------cCCChhHHHHHHHHHHHcc
Q 005344 248 RVVIVDTSNEIGG--------DGDVPHS------------GIGRA-R------RM------QVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 rViiVd~~~EIa~--------~~~ip~~------------~ig~~-r------r~------~v~s~G~qQRV~IArAL~~ 294 (701)
+|+++.|...+-. .+..+.. ++... . .+ ...|+||+||++||||+.+
T Consensus 549 ~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 549 FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred heEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 2334444322100 0000110 00000 0 01 1247899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH----Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI----AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l----~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+||||++||......+ .+ .|.|+|++||..+.+ ..+|+++++.+|++ +..|+.
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~-~~~D~i~~l~~G~i--~~~G~~ 692 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVA-KQSDKIIVLDHGKI--IEQGSH 692 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHH-HcCCEEEEEECCEE--EEECCH
Confidence 9999999999999999987554 22 479999999999987 56999999999998 555654
No 302
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.84 E-value=1.6e-20 Score=211.24 Aligned_cols=151 Identities=17% Similarity=0.196 Sum_probs=113.8
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN------- 256 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~------- 256 (701)
..++++.++++ .+|+++ +.+|++++|+||||||||||+++|+|+++|+.|. +.+++.+
T Consensus 266 ~~~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~--i~~~g~~i~~~~~~ 333 (510)
T PRK15439 266 APVLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGR--IMLNGKEINALSTA 333 (510)
T ss_pred CceEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcE--EEECCEECCCCCHH
Confidence 34678888873 136676 8999999999999999999999999999998775 3333210
Q ss_pred -----ccccCCC-------CC-----------------C-----------------CCCc-h--hhhccCCChhHHHHHH
Q 005344 257 -----EIGGDGD-------VP-----------------H-----------------SGIG-R--ARRMQVPNVNMQHSVM 287 (701)
Q Consensus 257 -----EIa~~~~-------ip-----------------~-----------------~~ig-~--~rr~~v~s~G~qQRV~ 287 (701)
.+++... ++ . .++. . .+...-.|+|||||++
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHH
Confidence 0111100 00 0 0000 0 0011224779999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
||++++.+|++||+||||++||+.++..+ ++.|.+||++||+.+++..+||+++++.+|++.
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~ 482 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEIS 482 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999998554 446999999999999999999999999999984
No 303
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.84 E-value=2.7e-20 Score=212.74 Aligned_cols=161 Identities=16% Similarity=0.198 Sum_probs=120.3
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.+++++++++|+. ...+++++ +++|+.++|+||||||||||++.|+|++.|+.|.
T Consensus 334 ~i~~~~v~~~y~~----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 409 (585)
T TIGR01192 334 AVEFRHITFEFAN----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRK 409 (585)
T ss_pred eEEEEEEEEECCC----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHh
Confidence 5889999999973 23578888 8999999999999999999999999999999885
Q ss_pred EEEEEcCCcccccC-------CCCCCC------------CCch---------h----hhccCCChhHHHHHHHHHHHccC
Q 005344 248 RVVIVDTSNEIGGD-------GDVPHS------------GIGR---------A----RRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 rViiVd~~~EIa~~-------~~ip~~------------~ig~---------~----rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
.+.++++...+-.. ...+.. ++.. . ..-...|+|++||++|||++..+
T Consensus 410 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 410 SIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred heEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 12233332211000 000000 0000 0 01112478999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 296 PETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||+||||++||+.+.+.+ ...|.|+|++||+.+... .||+++.+.+|++ +..|+.
T Consensus 490 p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i--~~~g~~ 553 (585)
T TIGR01192 490 APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRL--IEKGSF 553 (585)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEE--EEECCH
Confidence 999999999999999998655 235899999999999885 5999999999998 445554
No 304
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=2e-20 Score=209.69 Aligned_cols=152 Identities=19% Similarity=0.217 Sum_probs=113.3
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
..+++.+|++ .+++++ +.+|++++|+||||||||||+++|+|++.|+.|.
T Consensus 256 ~~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~ 325 (501)
T PRK10762 256 VRLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGL 325 (501)
T ss_pred cEEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHH
Confidence 4567777763 246776 8999999999999999999999999999998775
Q ss_pred --EEEEEcCCcc---c-ccC--------CCC----------CC-------------CCCc-h--hhhccCCChhHHHHHH
Q 005344 248 --RVVIVDTSNE---I-GGD--------GDV----------PH-------------SGIG-R--ARRMQVPNVNMQHSVM 287 (701)
Q Consensus 248 --rViiVd~~~E---I-a~~--------~~i----------p~-------------~~ig-~--~rr~~v~s~G~qQRV~ 287 (701)
.|+++.+... + ... ... .. .++. . .+...-.|+|||||++
T Consensus 326 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~ 405 (501)
T PRK10762 326 ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVA 405 (501)
T ss_pred HCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHH
Confidence 1333333210 0 000 000 00 0000 0 0011224779999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
||++++.+|++||+||||++||+.++..+ ++.|.+||++||+.+++..+||+++++.+|++.
T Consensus 406 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 474 (501)
T PRK10762 406 IARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRIS 474 (501)
T ss_pred HHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 99999999999999999999999998544 456999999999999999999999999999984
No 305
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.84 E-value=3.1e-20 Score=211.74 Aligned_cols=163 Identities=15% Similarity=0.205 Sum_probs=121.9
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
..++++|++++|+.. ...+|+++ +++|+.++|+||||||||||++.|+|++.|++|+
T Consensus 337 ~~i~~~~v~f~y~~~---~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r 413 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ---PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR 413 (574)
T ss_pred CeEEEEEEEEECCCC---CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHH
Confidence 358899999999631 23589998 8999999999999999999999999999999886
Q ss_pred -EEEEEcCCcccccC-------CCCCC------------CCCchh-h-----------hccCCChhHHHHHHHHHHHccC
Q 005344 248 -RVVIVDTSNEIGGD-------GDVPH------------SGIGRA-R-----------RMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 -rViiVd~~~EIa~~-------~~ip~------------~~ig~~-r-----------r~~v~s~G~qQRV~IArAL~~~ 295 (701)
.|.++.+...+-.. ...+. .++... . .-...|+|++||++|||++..+
T Consensus 414 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~ 493 (574)
T PRK11160 414 QAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493 (574)
T ss_pred hheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 13333333211000 00000 001000 0 1122578999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 296 PETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||+||||++||+.+.+.+ ...|.|+|+++|..+.+. .+|+++++.+|++ ++.|+.
T Consensus 494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~-~~d~i~~l~~G~i--~~~g~~ 557 (574)
T PRK11160 494 APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLE-QFDRICVMDNGQI--IEQGTH 557 (574)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHH-hCCEEEEEeCCeE--EEeCCH
Confidence 999999999999999998655 235899999999999886 4999999999998 555554
No 306
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.4e-20 Score=209.15 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=114.5
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
..+++.++++ . .+++++ |.+|++++|+||||||||||+++|+|+++|++|. +++++..
T Consensus 256 ~~l~~~~~~~--~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~--i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 256 VRLRLDGLKG--P-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQ--VYLDGKPIDIRSPRD 324 (501)
T ss_pred cEEEEecccc--C-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCce--EEECCEECCCCCHHH
Confidence 3567777762 1 367777 8999999999999999999999999999988876 3444311
Q ss_pred ----ccccCC-------CCCC-------------------------------------CCCc-h--hhhccCCChhHHHH
Q 005344 257 ----EIGGDG-------DVPH-------------------------------------SGIG-R--ARRMQVPNVNMQHS 285 (701)
Q Consensus 257 ----EIa~~~-------~ip~-------------------------------------~~ig-~--~rr~~v~s~G~qQR 285 (701)
.+++.. .++. .++. . .+.....|+|||||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQK 404 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHH
Confidence 010000 0000 0000 0 00112247799999
Q ss_pred HHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEE
Q 005344 286 VMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIES 350 (701)
Q Consensus 286 V~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~ 350 (701)
++||++++.+|++||+||||++||+.++..+ ++.|.+||++|||.+++..+||+++++.+|++..
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAG 476 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999998554 5669999999999999999999999999999843
No 307
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.84 E-value=1.9e-20 Score=194.02 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=109.8
Q ss_pred EeEEEEECcccccccceeccc--cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEE-----------EcCCcc--
Q 005344 193 IGLTCRVGRAVAGSAEIICDL--VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVI-----------VDTSNE-- 257 (701)
Q Consensus 193 ~nLs~rygr~v~G~~~~L~dl--I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrVii-----------Vd~~~E-- 257 (701)
.+|+++|+.. ..+++++ +.+|++++|+|||||||||||++|+|+++|+.|+ +. +++...
T Consensus 4 ~~~~~~y~~~----~~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~--I~~~~~~~~~~~~~~g~~~~~ 77 (255)
T cd03236 4 DEPVHRYGPN----SFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGK--FDDPPDWDEILDEFRGSELQN 77 (255)
T ss_pred cCcceeecCc----chhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCce--EeeccccchhhhhccCchhhh
Confidence 3688999732 2467776 7899999999999999999999999999999997 32 333210
Q ss_pred -----------ccc----CCCCCCC-------------------------CCchh--hhccCCChhHHHHHHHHHHHccC
Q 005344 258 -----------IGG----DGDVPHS-------------------------GIGRA--RRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 258 -----------Ia~----~~~ip~~-------------------------~ig~~--rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
++. ....+.. ++... ....-.++|++||++||++++.+
T Consensus 78 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 78 YFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARD 157 (255)
T ss_pred hhHHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 000 0000100 00000 01112467999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 296 PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
|+++|+|||+++||+.++..+ ++.|.++|+++|+.+.+..+||+++.+. |++
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~ 216 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEP 216 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCC
Confidence 999999999999999987433 4468999999999999999999999885 544
No 308
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=6.8e-20 Score=187.68 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=119.2
Q ss_pred cceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--ccc-CCCCCC--------------
Q 005344 207 AEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE--IGG-DGDVPH-------------- 266 (701)
Q Consensus 207 ~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E--Ia~-~~~ip~-------------- 266 (701)
..+|+|+ +.+|+.++|+|+||||||||||.|+|.++|+.|+ +.+.++-- +.. .+..|.
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~--v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~ 117 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK--VKVTGKVAPLIELGAGFDPELTGRENIYLRGLIL 117 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCce--EEEcceEehhhhcccCCCcccchHHHHHHHHHHh
Confidence 4678988 8999999999999999999999999999999998 55555411 100 011111
Q ss_pred -----------------CCCchhhhccC--CChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcC
Q 005344 267 -----------------SGIGRARRMQV--PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRG 320 (701)
Q Consensus 267 -----------------~~ig~~rr~~v--~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~G 320 (701)
..+|....+.+ -|.||+.|++++.+...+||+||+||..+-.|+.-++.+ .+.+
T Consensus 118 G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~ 197 (249)
T COG1134 118 GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN 197 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcC
Confidence 12222222222 366999999999999999999999999999999887543 4678
Q ss_pred CEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHHHhhhh
Q 005344 321 VQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKV 363 (701)
Q Consensus 321 vtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a~~r~~ 363 (701)
.++|+++|+++.+..+||+++++..|.+ ...|+++......
T Consensus 198 ~tiv~VSHd~~~I~~~Cd~~i~l~~G~i--~~~G~~~~vi~~Y 238 (249)
T COG1134 198 KTIVLVSHDLGAIKQYCDRAIWLEHGQI--RMEGSPEEVIPAY 238 (249)
T ss_pred CEEEEEECCHHHHHHhcCeeEEEeCCEE--EEcCCHHHHHHHH
Confidence 9999999999999999999999999999 6678876554433
No 309
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.84 E-value=4.8e-20 Score=214.22 Aligned_cols=160 Identities=22% Similarity=0.319 Sum_probs=121.8
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--c------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--E------ 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--E------ 257 (701)
.+++++++++|+. +...+|+++ +++|+.++|+|+||||||||+++|+|++.|+.|+ +.+|+.+ +
T Consensus 455 ~i~~~~vsf~y~~---~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~--I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 455 AITFENIRFRYAP---DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ--VLVDGVDLAIADPAWL 529 (694)
T ss_pred eEEEEEEEEEcCC---CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce--EEECCEehhhCCHHHH
Confidence 5899999999963 134588888 8999999999999999999999999999999986 5555431 0
Q ss_pred ---cccCCC----------------CCCC------------CCch---------h----hhccCCChhHHHHHHHHHHHc
Q 005344 258 ---IGGDGD----------------VPHS------------GIGR---------A----RRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 258 ---Ia~~~~----------------ip~~------------~ig~---------~----rr~~v~s~G~qQRV~IArAL~ 293 (701)
++.... .+.. ++.. . ..-.-.|+|++||++|||++.
T Consensus 530 r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall 609 (694)
T TIGR01846 530 RRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV 609 (694)
T ss_pred HHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH
Confidence 110000 0000 0000 0 001125789999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 294 HMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
.+|++||+||||++||+.+...+ ...|.|+|++||..+.+.. ||+++++.+|++ +..|+.
T Consensus 610 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i--~~~g~~ 675 (694)
T TIGR01846 610 GNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQI--AESGRH 675 (694)
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEE--EEeCCH
Confidence 99999999999999999998655 2358999999999998865 999999999999 555654
No 310
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=2.9e-20 Score=221.80 Aligned_cols=163 Identities=20% Similarity=0.331 Sum_probs=128.5
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc-------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE------- 257 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E------- 257 (701)
..++++|++++|+.. ....+|+++ |++|+.++|+||+||||||++..|.|++.|+.|. +++|+.+-
T Consensus 349 g~ief~nV~FsYPsR--pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~--V~idG~di~~~~~~~ 424 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSR--PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE--VLIDGEDIRNLNLKW 424 (1228)
T ss_pred cceEEEEEEecCCCC--CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce--EEEcCccchhcchHH
Confidence 468999999999842 245688988 9999999999999999999999999999999998 77776531
Q ss_pred ----cccCCCCCCC---------CCch---------------------------------hhhccCCChhHHHHHHHHHH
Q 005344 258 ----IGGDGDVPHS---------GIGR---------------------------------ARRMQVPNVNMQHSVMIEAV 291 (701)
Q Consensus 258 ----Ia~~~~ip~~---------~ig~---------------------------------~rr~~v~s~G~qQRV~IArA 291 (701)
|+.....|.. ..|. .+.. .+++|||||++|||+
T Consensus 425 lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~-qLSGGQKQRIAIARa 503 (1228)
T KOG0055|consen 425 LRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV-QLSGGQKQRIAIARA 503 (1228)
T ss_pred HHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC-CCChHHHHHHHHHHH
Confidence 1100111100 0000 0011 157899999999999
Q ss_pred HccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 292 ENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 292 L~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
++.+|+||+|||||++||+.+.+.. ...|.|-|+++|.++.+.. +|.++++++|+| |+.|+.++
T Consensus 504 lv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~I--vE~G~h~E 573 (1228)
T KOG0055|consen 504 LVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKI--VEQGTHDE 573 (1228)
T ss_pred HHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEE--EEecCHHH
Confidence 9999999999999999999987533 4569999999999999987 999999999999 77777643
No 311
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.9e-20 Score=183.69 Aligned_cols=178 Identities=22% Similarity=0.319 Sum_probs=131.8
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---cc--
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---EI-- 258 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---EI-- 258 (701)
.+.+++.+|++.|+.. +|| +++ +.+||+++|+|.+||||||||++|++-+.|+.|. |.|..... ++
T Consensus 4 ~PLL~V~~lsk~Yg~~-~gc----~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~-v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 4 KPLLSVSGLSKLYGPG-KGC----RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGT-VTYRMRDGQPRDLYT 77 (258)
T ss_pred CcceeehhhhhhhCCC-cCc----cccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCe-EEEEcCCCCchhHhh
Confidence 4567899999999842 333 344 7899999999999999999999999999999886 22322110 00
Q ss_pred --------------ccCCCCCCC----------CCch--------------------hh-------hc----cCCChhHH
Q 005344 259 --------------GGDGDVPHS----------GIGR--------------------AR-------RM----QVPNVNMQ 283 (701)
Q Consensus 259 --------------a~~~~ip~~----------~ig~--------------------~r-------r~----~v~s~G~q 283 (701)
+....-|.- ++|. .. +. ...++|||
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMq 157 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQ 157 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHH
Confidence 000000100 1110 00 11 11367999
Q ss_pred HHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCc
Q 005344 284 HSVMIEAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGD 355 (701)
Q Consensus 284 QRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd 355 (701)
||+.||+.|+..|.++++||||.|||+..+..+ .+-|.+++++|||+..+..++++.++|..|++ ++.|-
T Consensus 158 QRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~v--ve~GL 235 (258)
T COG4107 158 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQV--VESGL 235 (258)
T ss_pred HHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCE--ecccc
Confidence 999999999999999999999999999887544 56799999999999999999999999999998 55544
Q ss_pred HHHHhhhhHHHHhhccCCCcceeee
Q 005344 356 EEAKKRKVQKTILERKGPPTFTCAV 380 (701)
Q Consensus 356 ~~a~~r~~qe~Iler~~~p~f~~~v 380 (701)
. +.+++.+.+|+.+.++
T Consensus 236 T--------DrvLDDP~hPYTQLLV 252 (258)
T COG4107 236 T--------DRVLDDPHHPYTQLLV 252 (258)
T ss_pred c--------cccccCCCCchHHHHH
Confidence 3 4577888888876554
No 312
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.83 E-value=5.4e-20 Score=208.15 Aligned_cols=162 Identities=17% Similarity=0.232 Sum_probs=120.8
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.++++|++++|... ...+|+++ +++|+.++|+|+||||||||++.|+|++.|+.|+
T Consensus 330 ~i~~~~v~f~y~~~---~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~ 406 (571)
T TIGR02203 330 DVEFRNVTFRYPGR---DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406 (571)
T ss_pred eEEEEEEEEEcCCC---CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHh
Confidence 58899999999631 23578888 8999999999999999999999999999999886
Q ss_pred EEEEEcCCccccc--------CC---CCCCC---------CCchh-hhc------------cCCChhHHHHHHHHHHHcc
Q 005344 248 RVVIVDTSNEIGG--------DG---DVPHS---------GIGRA-RRM------------QVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 rViiVd~~~EIa~--------~~---~ip~~---------~ig~~-rr~------------~v~s~G~qQRV~IArAL~~ 294 (701)
+|.+++|...+-. .+ ..... ++... .++ ...|+|++||++|||++..
T Consensus 407 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred hceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 1333333321100 00 00000 11000 011 1257899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHHH------hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTIA------QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l~------e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+||||++||..+.+.+. ..+.|+|++||+.... ..||+++.+.+|++ +..|..
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~-~~~D~ii~l~~g~i--~~~g~~ 551 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTI-EKADRIVVMDDGRI--VERGTH 551 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHH-HhCCEEEEEeCCEE--EeeCCH
Confidence 99999999999999999987662 2579999999999876 56999999999998 444444
No 313
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.83 E-value=1.7e-20 Score=184.21 Aligned_cols=124 Identities=22% Similarity=0.386 Sum_probs=90.0
Q ss_pred cceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-------------ccccCCCCC-----
Q 005344 207 AEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------------EIGGDGDVP----- 265 (701)
Q Consensus 207 ~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------------EIa~~~~ip----- 265 (701)
..+|+++ +.+|++++|+||||||||||+++|+|++.|+.|. +.+++.+ .+++....+
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~--i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGA--VLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcee--EEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 3467776 8899999999999999999999999999998885 3343311 011100000
Q ss_pred CC-------------CCchh--------------------hhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHH
Q 005344 266 HS-------------GIGRA--------------------RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALA 312 (701)
Q Consensus 266 ~~-------------~ig~~--------------------rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a 312 (701)
.. ..... +...-.|+|++||++||++++.+|++||+||||++||+.+
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 162 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAG 162 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 00 00000 0111246799999999999999999999999999999999
Q ss_pred HHHH-------HhcCCEEEEEEcChhH
Q 005344 313 ASTI-------AQRGVQLVGTAHGMTI 332 (701)
Q Consensus 313 ~~~l-------~e~GvtVIiTTHd~~l 332 (701)
+..+ ++.|.++|++||+.++
T Consensus 163 ~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 163 REQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 8554 4558999999998764
No 314
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.83 E-value=2e-20 Score=206.00 Aligned_cols=155 Identities=23% Similarity=0.237 Sum_probs=123.6
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc-------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE------- 257 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E------- 257 (701)
..+++.+++|+|+. ..+.+++ +.+|++.+|+|.||+|||||+++|.|++.|++|+ +++++...
T Consensus 3 ~~l~~~~itK~f~~-----~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~Ge--I~v~G~~v~~~sP~d 75 (501)
T COG3845 3 PALEMRGITKRFPG-----VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE--IRVDGKEVRIKSPRD 75 (501)
T ss_pred ceEEEeccEEEcCC-----EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcce--EEECCEEeccCCHHH
Confidence 35789999999993 4677787 8999999999999999999999999999999998 77777521
Q ss_pred -----cccC----CCCCCC----------------CCch--h--------hhc----------cCCChhHHHHHHHHHHH
Q 005344 258 -----IGGD----GDVPHS----------------GIGR--A--------RRM----------QVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 258 -----Ia~~----~~ip~~----------------~ig~--~--------rr~----------~v~s~G~qQRV~IArAL 292 (701)
|+.. ..++.+ .++. . +++ .-.+.|+||||.|..+|
T Consensus 76 A~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaL 155 (501)
T COG3845 76 AIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKAL 155 (501)
T ss_pred HHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHH
Confidence 1000 000100 0000 0 111 12356999999999999
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 293 NHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
..+|++||+||||+-|.|....++ ++.|++||++||-++++..+||++-++..|++.
T Consensus 156 yr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 156 YRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 999999999999999999888544 788999999999999999999999999999973
No 315
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.83 E-value=5.1e-20 Score=209.60 Aligned_cols=162 Identities=17% Similarity=0.216 Sum_probs=120.7
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.+++++++++|+. +...+|+++ +++|+.++|+||||||||||+++|+|++.|+.|+
T Consensus 313 ~I~~~~v~~~y~~---~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 313 ELDVNIRQFTYPQ---TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred cEEEEEEEEECCC---CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHh
Confidence 4789999999973 134588888 8999999999999999999999999999999886
Q ss_pred EEEEEcCCcccccC-------CCCCCC------------CCch---------h----hhccCCChhHHHHHHHHHHHccC
Q 005344 248 RVVIVDTSNEIGGD-------GDVPHS------------GIGR---------A----RRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 rViiVd~~~EIa~~-------~~ip~~------------~ig~---------~----rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
.+.++.+...+-.. ...+.. ++.. . ..-...|+|++||++|||++..+
T Consensus 390 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~ 469 (569)
T PRK10789 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN 469 (569)
T ss_pred heEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 12333332211000 000000 0000 0 00112578999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 296 PETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||+||||++||+.+...+ ...|.|+|++||..+... .+|+++++.+|++ ++.|+.
T Consensus 470 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i--~~~g~~ 533 (569)
T PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHI--AQRGNH 533 (569)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEE--EEecCH
Confidence 999999999999999998655 236899999999998875 5999999999998 555654
No 316
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.83 E-value=7.3e-20 Score=207.29 Aligned_cols=155 Identities=12% Similarity=0.173 Sum_probs=117.7
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC----------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS---------- 255 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~---------- 255 (701)
.++++|++++|+. ...+|+++ +++|+.++|+||||||||||++.|+|++.|+.|. +.+++.
T Consensus 322 ~i~~~~v~f~y~~----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~--i~~~g~~~~~~~~~~~ 395 (547)
T PRK10522 322 TLELRNVTFAYQD----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE--ILLDGKPVTAEQPEDY 395 (547)
T ss_pred eEEEEEEEEEeCC----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE--EEECCEECCCCCHHHH
Confidence 5889999999972 23589988 8999999999999999999999999999999885 444432
Q ss_pred ----------cccccC--CCC-C------------CCCCchhhh-------ccCCChhHHHHHHHHHHHccCCCEEEEcC
Q 005344 256 ----------NEIGGD--GDV-P------------HSGIGRARR-------MQVPNVNMQHSVMIEAVENHMPETIIIDE 303 (701)
Q Consensus 256 ----------~EIa~~--~~i-p------------~~~ig~~rr-------~~v~s~G~qQRV~IArAL~~~PdVIILDE 303 (701)
..+-.. ... + ..+++.... -.-.|+|++||++|||++..+|++||+||
T Consensus 396 ~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE 475 (547)
T PRK10522 396 RKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475 (547)
T ss_pred hhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 111000 000 0 001111000 01357899999999999999999999999
Q ss_pred CCCcccHHHHHHH----H----hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEE
Q 005344 304 IGTELEALAASTI----A----QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIES 350 (701)
Q Consensus 304 PtsgLD~~a~~~l----~----e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~ 350 (701)
||++||+.+...+ . ..|.|+|++||..+.. ..||+++++.+|++..
T Consensus 476 ~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~-~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 476 WAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYF-IHADRLLEMRNGQLSE 529 (547)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHH-HhCCEEEEEECCEEEE
Confidence 9999999988543 1 2489999999999775 5799999999999843
No 317
>PLN03073 ABC transporter F family; Provisional
Probab=99.83 E-value=2.4e-20 Score=217.90 Aligned_cols=158 Identities=15% Similarity=0.194 Sum_probs=120.2
Q ss_pred ccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcC---CCCCCcEEEEEcCCc---
Q 005344 186 RNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARML---ADDHMKRVVIVDTSN--- 256 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlL---sp~~GkrViiVd~~~--- 256 (701)
+..+|++.||+++|+. ..+|+++ |..|+.++|+|+||||||||||+|+|.. .|..|+ |.++++..
T Consensus 174 ~~~~I~i~nls~~y~~-----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~-I~~~~Q~~~g~ 247 (718)
T PLN03073 174 AIKDIHMENFSISVGG-----RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQ-ILHVEQEVVGD 247 (718)
T ss_pred CceeEEEceEEEEeCC-----CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCE-EEEEeccCCCC
Confidence 3346899999999973 3589998 9999999999999999999999999864 344454 55555421
Q ss_pred cc---------------------ccCC--------------------CCCCC----------------------------
Q 005344 257 EI---------------------GGDG--------------------DVPHS---------------------------- 267 (701)
Q Consensus 257 EI---------------------a~~~--------------------~ip~~---------------------------- 267 (701)
.+ +... ..+..
T Consensus 248 ~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~ 327 (718)
T PLN03073 248 DTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASI 327 (718)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 00 0000 00000
Q ss_pred ----CCc---hhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH----HhcCCEEEEEEcChhHHHHh
Q 005344 268 ----GIG---RARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI----AQRGVQLVGTAHGMTIDNIV 336 (701)
Q Consensus 268 ----~ig---~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~e~GvtVIiTTHd~~l~~~l 336 (701)
++. ..+...-.|+|++||++||++|+++|++||+||||++||+.+...+ .+.|.++|++||+..++..+
T Consensus 328 L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~ 407 (718)
T PLN03073 328 LAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTV 407 (718)
T ss_pred HHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHh
Confidence 000 0011233578999999999999999999999999999999998655 55689999999999999999
Q ss_pred cCcEEEEeCCeEE
Q 005344 337 KNPSLQILVGGIE 349 (701)
Q Consensus 337 ~drvlvl~~G~I~ 349 (701)
||+++.+.+|++.
T Consensus 408 ~d~i~~l~~g~i~ 420 (718)
T PLN03073 408 VTDILHLHGQKLV 420 (718)
T ss_pred CCEEEEEECCEEE
Confidence 9999999999984
No 318
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=2.7e-20 Score=183.53 Aligned_cols=134 Identities=16% Similarity=0.106 Sum_probs=97.5
Q ss_pred ceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc------cccCC---CCCCCCCch---h
Q 005344 208 EIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE------IGGDG---DVPHSGIGR---A 272 (701)
Q Consensus 208 ~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E------Ia~~~---~ip~~~ig~---~ 272 (701)
.+++++ +.+|++++|+||||||||||||+|.+ +.|. +.+..... +.+.. .+...+++. .
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~--v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~ 82 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGK--ARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLG 82 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCc--EEECCcccccccccEEEEhHHHHHHHcCCCccccC
Confidence 467776 88999999999999999999999863 3454 22222100 10000 001112211 1
Q ss_pred hhccCCChhHHHHHHHHHHHccC--CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 005344 273 RRMQVPNVNMQHSVMIEAVENHM--PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI 343 (701)
Q Consensus 273 rr~~v~s~G~qQRV~IArAL~~~--PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl 343 (701)
......++|++||++|+++++.+ |++||+|||+++||+.....+ ++.|.+||++||+.+++. .||+++.+
T Consensus 83 ~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~~d~i~~l 161 (176)
T cd03238 83 QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-SADWIIDF 161 (176)
T ss_pred CCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEE
Confidence 23344688999999999999999 999999999999999988544 346999999999999874 79999999
Q ss_pred eCCeE
Q 005344 344 LVGGI 348 (701)
Q Consensus 344 ~~G~I 348 (701)
.+|..
T Consensus 162 ~~g~~ 166 (176)
T cd03238 162 GPGSG 166 (176)
T ss_pred CCCCC
Confidence 87653
No 319
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.83 E-value=8.5e-20 Score=206.94 Aligned_cols=161 Identities=16% Similarity=0.225 Sum_probs=120.3
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC-----------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT----------- 254 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~----------- 254 (701)
.+++++++++|+.. ....+|+++ +++|+.++|+|+||||||||++.|+|++.|..|. +.+++
T Consensus 337 ~i~~~~v~f~y~~~--~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~--I~i~g~~i~~~~~~~~ 412 (576)
T TIGR02204 337 EIEFEQVNFAYPAR--PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR--ILLDGVDLRQLDPAEL 412 (576)
T ss_pred eEEEEEEEEECCCC--CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE--EEECCEEHHhcCHHHH
Confidence 58899999999731 113588888 8999999999999999999999999999999886 44443
Q ss_pred ---------CcccccC-------CCCCCC------------CCch---------h----hhccCCChhHHHHHHHHHHHc
Q 005344 255 ---------SNEIGGD-------GDVPHS------------GIGR---------A----RRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 255 ---------~~EIa~~-------~~ip~~------------~ig~---------~----rr~~v~s~G~qQRV~IArAL~ 293 (701)
...+-.. ...+.. ++.. . ..-...|+|++||++|||++.
T Consensus 413 ~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~ 492 (576)
T TIGR02204 413 RARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL 492 (576)
T ss_pred HHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 2211000 000000 0000 0 011125789999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 294 HMPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
.+|++||+||||++||..+.+.+ . ..+.|+|++||+..... .+|+++.+.+|++ +..|..
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~--~~~g~~ 558 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRI--VAQGTH 558 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEE--EeeecH
Confidence 99999999999999999998655 2 25899999999998874 6999999999998 444443
No 320
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.83 E-value=8.2e-20 Score=207.45 Aligned_cols=159 Identities=11% Similarity=0.165 Sum_probs=119.0
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--c-----
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--E----- 257 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--E----- 257 (701)
..++++|++++|+........+|+++ +++|+.++|+||||||||||++.|+|++.|+.|. +.+++.+ +
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~--i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGE--ILLDGAAVSADSRDD 413 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEECCEECCCCCHHH
Confidence 35889999999973200112588888 8999999999999999999999999999999987 5555431 0
Q ss_pred ----cccCCC-------------CCC------------CCCchh-hh-------ccCCChhHHHHHHHHHHHccCCCEEE
Q 005344 258 ----IGGDGD-------------VPH------------SGIGRA-RR-------MQVPNVNMQHSVMIEAVENHMPETII 300 (701)
Q Consensus 258 ----Ia~~~~-------------ip~------------~~ig~~-rr-------~~v~s~G~qQRV~IArAL~~~PdVII 300 (701)
++.... .+. .++... .. ....|+|++||++|||++..+|+++|
T Consensus 414 ~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ili 493 (555)
T TIGR01194 414 YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILL 493 (555)
T ss_pred HHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 110000 000 000000 00 11357899999999999999999999
Q ss_pred EcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 301 IDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 301 LDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+||||++||+...+.+ +..|.|+|++||+.+.. ..||+++++.+|++.
T Consensus 494 lDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 494 FDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF-ELADQIIKLAAGCIV 549 (555)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-HhCCEEEEEECCEEE
Confidence 9999999999998543 13589999999999876 489999999999983
No 321
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.82 E-value=1e-19 Score=210.97 Aligned_cols=151 Identities=17% Similarity=0.228 Sum_probs=116.8
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEcCCccc
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVDTSNEI 258 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd~~~EI 258 (701)
.++++||+++|+. ...+++++ +++|++++|+||||||||||+++|+|+++++.|. ++.++.+...+
T Consensus 451 ~i~~~nv~~~~~~----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l 526 (659)
T TIGR00954 451 GIKFENIPLVTPN----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYM 526 (659)
T ss_pred eEEEEeeEEECCC----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCC
Confidence 5899999999852 23688888 8999999999999999999999999999988774 46677765422
Q ss_pred cc--------CCC------CCC------------CCCchh-hh----------ccCCChhHHHHHHHHHHHccCCCEEEE
Q 005344 259 GG--------DGD------VPH------------SGIGRA-RR----------MQVPNVNMQHSVMIEAVENHMPETIII 301 (701)
Q Consensus 259 a~--------~~~------ip~------------~~ig~~-rr----------~~v~s~G~qQRV~IArAL~~~PdVIIL 301 (701)
.. .+. .+. .++... .+ ....|+|||||++|||++.++|++||+
T Consensus 527 ~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illL 606 (659)
T TIGR00954 527 TLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAIL 606 (659)
T ss_pred CCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 10 000 000 011100 00 124688999999999999999999999
Q ss_pred cCCCCcccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEe
Q 005344 302 DEIGTELEALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQIL 344 (701)
Q Consensus 302 DEPtsgLD~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~ 344 (701)
||||++||+.....+ .+.|.|+|++||+.+.. ..||+++++.
T Consensus 607 DEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~-~~~d~il~l~ 652 (659)
T TIGR00954 607 DECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW-KYHEYLLYMD 652 (659)
T ss_pred eCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH-HhCCEEEEEe
Confidence 999999999988655 45699999999999987 5799999886
No 322
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.8e-19 Score=201.91 Aligned_cols=165 Identities=15% Similarity=0.232 Sum_probs=122.0
Q ss_pred hccceEEEE--eEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------
Q 005344 185 IRNRKMQVI--GLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------ 247 (701)
Q Consensus 185 ir~~~IeI~--nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------ 247 (701)
-+...+++. +|+++|+. +..++.++ +++|+.++|+|+||||||||++.|+|+++|+.|.
T Consensus 314 ~~~~~~ei~~~~l~~~y~~----g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~ 389 (559)
T COG4988 314 ANEPPIEISLENLSFRYPD----GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLS 389 (559)
T ss_pred ccCCCceeeecceEEecCC----CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccC
Confidence 343445555 99999984 23788888 8999999999999999999999999999999885
Q ss_pred ------EEEEEcCCcccccC---CC--CCCC--------------CC--------chhhhc----cCCChhHHHHHHHHH
Q 005344 248 ------RVVIVDTSNEIGGD---GD--VPHS--------------GI--------GRARRM----QVPNVNMQHSVMIEA 290 (701)
Q Consensus 248 ------rViiVd~~~EIa~~---~~--ip~~--------------~i--------g~~rr~----~v~s~G~qQRV~IAr 290 (701)
++.+|.+++.+-.. .. +.+. ++ |..... .-.|+|++||+++||
T Consensus 390 ~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 390 PEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALAR 469 (559)
T ss_pred HHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHH
Confidence 23444443322100 00 0000 00 000000 114789999999999
Q ss_pred HHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 291 VENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 291 AL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|+.++++++|+||||++||+++...+ ..++.|+|++||....+ .-+|+++++.+|++ +..|..
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~-~~~D~I~vld~G~l--~~~g~~ 538 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDA-ADADRIVVLDNGRL--VEQGTH 538 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHH-hcCCEEEEecCCce--eccCCH
Confidence 99999999999999999999998655 34579999999998876 57899999999999 656665
No 323
>PLN03211 ABC transporter G-25; Provisional
Probab=99.82 E-value=7.5e-20 Score=212.13 Aligned_cols=161 Identities=21% Similarity=0.269 Sum_probs=119.1
Q ss_pred EEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC--CCc--------------EEEE
Q 005344 191 QVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADD--HMK--------------RVVI 251 (701)
Q Consensus 191 eI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~--~Gk--------------rVii 251 (701)
.+.+++++|+. ..+|+++ +++|++++|+|||||||||||++|+|.+.++ .|+ ++++
T Consensus 70 ~~~~l~~~~~~-----~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~y 144 (659)
T PLN03211 70 KISDETRQIQE-----RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGF 144 (659)
T ss_pred ccccccccCCC-----CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEE
Confidence 35567788863 4689998 9999999999999999999999999999874 453 2444
Q ss_pred EcCCccccc------------CCCCCC-----------------CCCchhh-------hccCCChhHHHHHHHHHHHccC
Q 005344 252 VDTSNEIGG------------DGDVPH-----------------SGIGRAR-------RMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 252 Vd~~~EIa~------------~~~ip~-----------------~~ig~~r-------r~~v~s~G~qQRV~IArAL~~~ 295 (701)
+.+...+.. ....+. .++.... ...-.|+|||||++||++++.+
T Consensus 145 v~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~ 224 (659)
T PLN03211 145 VTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 224 (659)
T ss_pred ECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhC
Confidence 444321100 000010 0110000 0112578999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChh-HHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 296 PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMT-IDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~-l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
|++|++||||++||..++..+ ++.|.|||+++|+.+ .+..++|+++.+.+|++ +..|+.+.
T Consensus 225 P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~i--v~~G~~~~ 293 (659)
T PLN03211 225 PSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRC--LFFGKGSD 293 (659)
T ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcE--EEECCHHH
Confidence 999999999999999998544 457999999999998 47889999999999998 55666643
No 324
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.82 E-value=1.2e-19 Score=195.90 Aligned_cols=181 Identities=15% Similarity=0.192 Sum_probs=132.6
Q ss_pred ccceEEEEeEEEEECccc---c---cccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc
Q 005344 186 RNRKMQVIGLTCRVGRAV---A---GSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN 256 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v---~---G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~ 256 (701)
....++.++|.+.|.... . ....+++++ +..|+.++|+|.+|||||||-++|.+++++. |. +.+++..
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~--I~F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GE--IRFDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ce--EEECCcc
Confidence 445678999998885321 1 112456776 8899999999999999999999999999877 54 3333321
Q ss_pred cc--------------cc------CCCCCCC---------------CC------------------chhhhcc---CCCh
Q 005344 257 EI--------------GG------DGDVPHS---------------GI------------------GRARRMQ---VPNV 280 (701)
Q Consensus 257 EI--------------a~------~~~ip~~---------------~i------------------g~~rr~~---v~s~ 280 (701)
-- +. -...|.+ .+ ....+.. -.|+
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 00 00 0011111 11 1111111 1378
Q ss_pred hHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEe
Q 005344 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVT 352 (701)
Q Consensus 281 G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~ 352 (701)
|++||++||||++.+|++|++||||++||...+..+ .+.|.+-++++||+..+..+||++++|.+|+| |+
T Consensus 430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gki--VE 507 (534)
T COG4172 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKI--VE 507 (534)
T ss_pred chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEE--ee
Confidence 999999999999999999999999999999887544 56799999999999999999999999999999 88
Q ss_pred cCcHHHHhhhhHHHHhhccCCCcceee
Q 005344 353 LGDEEAKKRKVQKTILERKGPPTFTCA 379 (701)
Q Consensus 353 lgd~~a~~r~~qe~Iler~~~p~f~~~ 379 (701)
.|+.+ .+++.+..+|.+.+
T Consensus 508 ~G~~~--------~if~~P~~~YT~~L 526 (534)
T COG4172 508 QGPTE--------AVFANPQHEYTRAL 526 (534)
T ss_pred eCCHH--------HHhcCCCcHHHHHH
Confidence 88884 46666666665543
No 325
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.82 E-value=8.8e-20 Score=194.91 Aligned_cols=131 Identities=23% Similarity=0.316 Sum_probs=97.8
Q ss_pred EEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------ccccC----CCCCCC-------------CCch----
Q 005344 222 VIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---------EIGGD----GDVPHS-------------GIGR---- 271 (701)
Q Consensus 222 IIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---------EIa~~----~~ip~~-------------~ig~---- 271 (701)
|+||||||||||||+|+|++.|++|+ +.+++.+ .+++. ..+++. ....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~--I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGS--IMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceE--EEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 68999999999999999999999886 4444321 01110 011110 0000
Q ss_pred ------hhh----------ccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEE
Q 005344 272 ------ARR----------MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------A-QRGVQLVGTA 327 (701)
Q Consensus 272 ------~rr----------~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTT 327 (701)
... ..-.|+|||||++||++++.+|++||+|||+++||+..+..+ . +.|.|+|++|
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivT 158 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVT 158 (325)
T ss_pred HHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 001 112478999999999999999999999999999999998554 2 3489999999
Q ss_pred cChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 328 HGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 328 Hd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|+.+++..+||++++|.+|++ +..++.
T Consensus 159 Hd~~e~~~~~d~i~vl~~G~i--~~~g~~ 185 (325)
T TIGR01187 159 HDQEEAMTMSDRIAIMRKGKI--AQIGTP 185 (325)
T ss_pred CCHHHHHHhCCEEEEEECCEE--EEEcCH
Confidence 999999999999999999998 444554
No 326
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.81 E-value=2.2e-19 Score=203.92 Aligned_cols=161 Identities=20% Similarity=0.320 Sum_probs=122.4
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
..++++++++.|+. ...+|+++ +++|+.++|+||+|||||||++.|+|++.|+.|+ +.+|+.+
T Consensus 327 ~~I~f~~vsf~y~~----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~--I~idg~dI~~i~~~~ 400 (567)
T COG1132 327 GSIEFENVSFSYPG----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGE--ILIDGIDIRDISLDS 400 (567)
T ss_pred CeEEEEEEEEEcCC----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCe--EEECCEehhhcCHHH
Confidence 34889999999983 34789988 8999999999999999999999999999999887 5555431
Q ss_pred ---ccccCCCC----------------CCC-------------------CC--chhhhc----cCCChhHHHHHHHHHHH
Q 005344 257 ---EIGGDGDV----------------PHS-------------------GI--GRARRM----QVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 257 ---EIa~~~~i----------------p~~-------------------~i--g~~rr~----~v~s~G~qQRV~IArAL 292 (701)
.++...+- +.. .+ |..... .-.|+|||||++||||+
T Consensus 401 lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARal 480 (567)
T COG1132 401 LRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARAL 480 (567)
T ss_pred HHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHH
Confidence 01100000 000 00 000000 12467999999999999
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 293 NHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
..+|++||+||||+++|+.+...+ ...|.|+|+++|..+.+.. +|+++++.+|++ ++.|+.+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i--~e~G~h~ 548 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRI--VERGTHE 548 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEE--EEecCHH
Confidence 999999999999999999987544 2356799999999988877 999999999998 6666663
No 327
>PRK13409 putative ATPase RIL; Provisional
Probab=99.81 E-value=7.7e-20 Score=209.63 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=110.3
Q ss_pred eEEEEECcccccccceeccc--cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEE-----------EcCCc----
Q 005344 194 GLTCRVGRAVAGSAEIICDL--VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVI-----------VDTSN---- 256 (701)
Q Consensus 194 nLs~rygr~v~G~~~~L~dl--I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrVii-----------Vd~~~---- 256 (701)
.++++|+. ...+|+++ +.+|++++|+||||||||||||+|+|++.|+.|+ +. +++..
T Consensus 78 ~~~~~yg~----~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~--i~~~~~~~~~~~~~~G~~l~~~ 151 (590)
T PRK13409 78 EPVHRYGV----NGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGD--YEEEPSWDEVLKRFRGTELQNY 151 (590)
T ss_pred CceEEecC----CceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcc--ccCCCcHHHHHHHhCChHHHHH
Confidence 37899983 22467777 8999999999999999999999999999999887 32 33221
Q ss_pred ---------ccc----cCCCCCCC-------------------------CCch--hhhccCCChhHHHHHHHHHHHccCC
Q 005344 257 ---------EIG----GDGDVPHS-------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 257 ---------EIa----~~~~ip~~-------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~P 296 (701)
.++ .....|.. ++.. .+...-.|+||+||++||++++.+|
T Consensus 152 ~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p 231 (590)
T PRK13409 152 FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDA 231 (590)
T ss_pred HHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 000 00011100 0000 0112235789999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCC
Q 005344 297 ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVG 346 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G 346 (701)
++||+||||++||+..+..+ ++ |.++|+++|+++++..++|+++++..+
T Consensus 232 ~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 232 DFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999988544 34 999999999999999999999998753
No 328
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.3e-19 Score=199.41 Aligned_cols=160 Identities=16% Similarity=0.287 Sum_probs=123.9
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccc-----
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEI----- 258 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EI----- 258 (701)
+..|++.|+++.|+. ..++|+++ |.+|+.++|+|+|||||||+||+|.+.+. .+|+ +.||+.+--
T Consensus 349 ~~~I~F~dV~f~y~~----k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~--I~IdG~dik~~~~~ 421 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGP----KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGS--ILIDGQDIKEVSLE 421 (591)
T ss_pred CCcEEEEeeEEEeCC----CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCc--EEECCeeHhhhChH
Confidence 334889999999994 35699999 99999999999999999999999999998 6776 566654210
Q ss_pred ---ccCCCCCCC-------------------------------CC---------ch----hhhccCCChhHHHHHHHHHH
Q 005344 259 ---GGDGDVPHS-------------------------------GI---------GR----ARRMQVPNVNMQHSVMIEAV 291 (701)
Q Consensus 259 ---a~~~~ip~~-------------------------------~i---------g~----~rr~~v~s~G~qQRV~IArA 291 (701)
...+.+||. ++ |. -.+-...++|+|||++|||+
T Consensus 422 SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 422 SLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARA 501 (591)
T ss_pred HhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHH
Confidence 000112221 00 00 01222357899999999999
Q ss_pred HccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 292 ENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 292 L~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+..+|+++++||||++||..+-+++ ...|.|+|++.|+.+++. -+|.++++.+|++. +.|.-
T Consensus 502 ~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~-~~DkI~~l~nG~v~--e~gth 569 (591)
T KOG0057|consen 502 FLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLK-DFDKIIVLDNGTVK--EYGTH 569 (591)
T ss_pred HhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHh-cCCEEEEEECCeeE--EeccH
Confidence 9999999999999999999988665 356999999999999984 68999999999994 34444
No 329
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.81 E-value=1.8e-19 Score=202.70 Aligned_cols=149 Identities=14% Similarity=0.222 Sum_probs=111.7
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC----------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS---------- 255 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~---------- 255 (701)
.++++|++++|+.. ...+|+++ +++|+.++|+||||||||||++.|+|++.|+.|+ +.+++.
T Consensus 320 ~i~~~~v~f~y~~~---~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~--I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 320 SLEFSGLSVAYPGR---RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS--IAVNGVPLADADADSW 394 (529)
T ss_pred eEEEEEEEEECCCC---CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE--EEECCEehhhCCHHHH
Confidence 58899999999731 23589988 8999999999999999999999999999999885 444443
Q ss_pred ----------cccccC-------CCCCCC------------CCch---------h----hhccCCChhHHHHHHHHHHHc
Q 005344 256 ----------NEIGGD-------GDVPHS------------GIGR---------A----RRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 256 ----------~EIa~~-------~~ip~~------------~ig~---------~----rr~~v~s~G~qQRV~IArAL~ 293 (701)
..+-.. ...+.. ++.. . ..-...|+|++||++|||++.
T Consensus 395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~ 474 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL 474 (529)
T ss_pred HhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh
Confidence 211000 000000 0000 0 001125789999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEE
Q 005344 294 HMPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQI 343 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl 343 (701)
++|++||+||||++||+.+.+.+ . ..|.|+|++||+.+... .||+++++
T Consensus 475 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 475 RDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 99999999999999999998655 2 25899999999998874 68988764
No 330
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.81 E-value=3.2e-19 Score=206.51 Aligned_cols=163 Identities=16% Similarity=0.201 Sum_probs=121.8
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
.+++++|++++|+.. .+...+++++ +.+|++++|+||||||||||+++|+|+++|+.|+ +.+++.+
T Consensus 3 ~~l~~~nl~~~y~~~-~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~--i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 3 ALLELKDIRRSYPSG-EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT--YRVAGQDVATLDADA 79 (648)
T ss_pred cEEEEeeEEEEeCCC-CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE--EEECCEEcCcCCHHH
Confidence 368999999999621 1224588888 8999999999999999999999999999998885 4444321
Q ss_pred -------ccccC----CCCCCC-------------CCchh----------h----------hccCCChhHHHHHHHHHHH
Q 005344 257 -------EIGGD----GDVPHS-------------GIGRA----------R----------RMQVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 257 -------EIa~~----~~ip~~-------------~ig~~----------r----------r~~v~s~G~qQRV~IArAL 292 (701)
.+++. ..+++. +.... + ...-.+.||+||++||+++
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL 159 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARAL 159 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHH
Confidence 01110 001110 00000 0 1112467999999999999
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 293 NHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+.+|++||+|||+++||+.+++.+ ++.|.++|++||+.+.+. .||+++.+.+|++. ..++.
T Consensus 160 ~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~--~~g~~ 227 (648)
T PRK10535 160 MNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIV--RNPPA 227 (648)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEE--eecCc
Confidence 999999999999999999998654 446999999999999886 69999999999984 44444
No 331
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2e-19 Score=205.16 Aligned_cols=161 Identities=19% Similarity=0.300 Sum_probs=123.7
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
.++++||++.|+.. -...+|+|+ |++|++++|+||+|+||||++..|-+++.|++|+ +.+|+.+
T Consensus 465 ~IeF~~VsFaYP~R--p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~--IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTR--PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGR--ILLDGVPISDINHKYL 540 (716)
T ss_pred eEEEEEeeeecCCC--CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe--EEECCeehhhcCHHHH
Confidence 57899999999742 245689999 9999999999999999999999999999999997 6666642
Q ss_pred --ccccCCCCCCC-----------C--------Cchh----------------hhcc------CCChhHHHHHHHHHHHc
Q 005344 257 --EIGGDGDVPHS-----------G--------IGRA----------------RRMQ------VPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 257 --EIa~~~~ip~~-----------~--------ig~~----------------rr~~------v~s~G~qQRV~IArAL~ 293 (701)
.|+..++-|.. + +..+ -.+. -.++|||||++|||||.
T Consensus 541 r~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred HHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 11111111110 0 0000 0111 14789999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 294 HMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
.+|.||||||.|++||+++-..+ .-.|.|||.++|-++.+ ..+|.|+++.+|++ ++.|.-
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV-~~Ad~Ivvi~~G~V--~E~G~h 686 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTV-RHADQIVVIDKGRV--VEMGTH 686 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHh-hhccEEEEEcCCeE--EecccH
Confidence 99999999999999999886433 23579999999999988 47899999999999 666643
No 332
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3e-19 Score=198.31 Aligned_cols=160 Identities=14% Similarity=0.207 Sum_probs=122.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-----c---
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-----E--- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-----E--- 257 (701)
.++++|++++|... ...+|+++ +.+||.++|+|++|||||||+..|+|.+.|+.|+ +.+.+.. +
T Consensus 336 ~l~~~~vsF~y~~~---~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~--i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 336 ALELRNVSFTYPGQ---QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGS--ITLNGVEIASLDEQAL 410 (573)
T ss_pred eeeeccceeecCCC---ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCe--eeECCcChhhCChhhH
Confidence 68899999999843 44689998 9999999999999999999999999999999886 4444321 0
Q ss_pred ---cccCCCCCC----------------------------CCCchh---------hhcc----CCChhHHHHHHHHHHHc
Q 005344 258 ---IGGDGDVPH----------------------------SGIGRA---------RRMQ----VPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 258 ---Ia~~~~ip~----------------------------~~ig~~---------rr~~----v~s~G~qQRV~IArAL~ 293 (701)
+.....-+| .++... ..++ -.|+|++||++|||++.
T Consensus 411 ~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL 490 (573)
T COG4987 411 RETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALL 490 (573)
T ss_pred HHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHH
Confidence 000000000 001000 0111 24789999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 294 HMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++..++|+||||.|||+.+.+++ .-+|+|+|++||....+ ..||+++++.+|++ ++.|+.
T Consensus 491 ~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~l-e~~drIivl~~Gki--ie~G~~ 556 (573)
T COG4987 491 HDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGL-ERMDRIIVLDNGKI--IEEGTH 556 (573)
T ss_pred cCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccH-hhcCEEEEEECCee--eecCCH
Confidence 99999999999999999998665 34699999999999887 47999999999998 666665
No 333
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=1.1e-19 Score=177.50 Aligned_cols=143 Identities=17% Similarity=0.334 Sum_probs=112.4
Q ss_pred cccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc-----------cccCCC-------
Q 005344 205 GSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-----------IGGDGD------- 263 (701)
Q Consensus 205 G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-----------Ia~~~~------- 263 (701)
+.+.+|+++ +.+|++++|+||+|||||||+|++|.+++|++|. +++.+... +.++..
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~--l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGT--LLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCce--EEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 356788887 8999999999999999999999999999999997 66665421 111110
Q ss_pred -------CCCC------------------CCch---hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHH
Q 005344 264 -------VPHS------------------GIGR---ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST 315 (701)
Q Consensus 264 -------ip~~------------------~ig~---~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~ 315 (701)
+|.. +++. .++..-.++|++||++|+|-|...|++|++||||++||+.+.+.
T Consensus 92 tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ 171 (223)
T COG4619 92 TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRN 171 (223)
T ss_pred chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHH
Confidence 0110 0000 01112257899999999999999999999999999999998855
Q ss_pred H--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 316 I--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 316 l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+ ++..+.++.+|||.+.+-..+++++.+..|.+.
T Consensus 172 ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 172 IEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred HHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 4 578899999999999999999999999999873
No 334
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.81 E-value=2e-19 Score=202.35 Aligned_cols=137 Identities=17% Similarity=0.252 Sum_probs=102.0
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------E
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-----------------R 248 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-----------------r 248 (701)
.++++|++++|+. ...+|+++ +++|+.++|+||+|||||||++.|+|++.|++|. +
T Consensus 334 ~I~~~~vsf~Y~~----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~ 409 (529)
T TIGR02868 334 TLELRDLSFGYPG----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRR 409 (529)
T ss_pred eEEEEEEEEecCC----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhh
Confidence 5889999999973 23589998 8999999999999999999999999999999886 2
Q ss_pred EEEEcCCcccccC-------CCCCCC------------CCchh-h------hc------cCCChhHHHHHHHHHHHccCC
Q 005344 249 VVIVDTSNEIGGD-------GDVPHS------------GIGRA-R------RM------QVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 249 ViiVd~~~EIa~~-------~~ip~~------------~ig~~-r------r~------~v~s~G~qQRV~IArAL~~~P 296 (701)
|.+|+|...+-.. -..+.. ++... . .. .-.|+||+||++||||+..+|
T Consensus 410 i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~ 489 (529)
T TIGR02868 410 ISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA 489 (529)
T ss_pred eEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC
Confidence 3344443221000 000000 00000 0 00 125789999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcC
Q 005344 297 ETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHG 329 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd 329 (701)
++||+||||++||..+...+ . ..+.|+|++||.
T Consensus 490 ~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 490 PILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 99999999999999998655 2 248999999996
No 335
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.80 E-value=2.6e-19 Score=202.49 Aligned_cols=159 Identities=15% Similarity=0.219 Sum_probs=126.2
Q ss_pred hccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCC-------cEEEEEcC
Q 005344 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHM-------KRVVIVDT 254 (701)
Q Consensus 185 ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~G-------krViiVd~ 254 (701)
..+..+++.++++.|+. ...+++++ |..|+.++|+||||+||||||+.|+|.+.|.+| .+++|++|
T Consensus 317 ~g~~vl~~~~~~~~y~~----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q 392 (530)
T COG0488 317 LGKLVLEFENVSKGYDG----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQ 392 (530)
T ss_pred CCCeeEEEeccccccCC----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEe
Confidence 45667899999999973 24688888 899999999999999999999999999988876 35788888
Q ss_pred Cccc-ccC--------CCCCC------------CCCch---hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccH
Q 005344 255 SNEI-GGD--------GDVPH------------SGIGR---ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEA 310 (701)
Q Consensus 255 ~~EI-a~~--------~~ip~------------~~ig~---~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~ 310 (701)
...- ... ...+. +.+.. .......|+|+|.|+++|+++...|.+|||||||+.||.
T Consensus 393 ~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi 472 (530)
T COG0488 393 HRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDI 472 (530)
T ss_pred hhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCH
Confidence 6421 100 00110 01110 123445789999999999999999999999999999999
Q ss_pred HHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 311 LAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 311 ~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
.+...+ ....-+||++|||..+++.+|++++.+.. .+
T Consensus 473 ~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~ 513 (530)
T COG0488 473 ESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KV 513 (530)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ce
Confidence 998665 45577999999999999999999999987 55
No 336
>PLN03232 ABC transporter C family member; Provisional
Probab=99.79 E-value=1e-18 Score=218.07 Aligned_cols=161 Identities=15% Similarity=0.242 Sum_probs=123.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------- 257 (701)
.++++|++++|.. +...+|+++ |++|+.++|+|++|||||||+++|.|++.|++|+ +.+|+.+-
T Consensus 1234 ~I~f~nVsf~Y~~---~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~--I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1234 SIKFEDVHLRYRP---GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGR--IMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred cEEEEEEEEEECC---CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCce--EEECCEEhhhCCHHHH
Confidence 5889999999952 234689999 9999999999999999999999999999999986 55554310
Q ss_pred ---cccCCCC-------------CCC--------------CCchh-hh------c------cCCChhHHHHHHHHHHHcc
Q 005344 258 ---IGGDGDV-------------PHS--------------GIGRA-RR------M------QVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 258 ---Ia~~~~i-------------p~~--------------~ig~~-rr------~------~v~s~G~qQRV~IArAL~~ 294 (701)
++...+- +.. ++... .. . .-.|+|||||++||||+..
T Consensus 1309 R~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr 1388 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388 (1495)
T ss_pred HhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh
Confidence 0000000 000 00000 00 0 1246799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 295 MPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
+|++||+||+|+++|..+.+.+ . ..++|+|+++|..+.+.. +|+++++.+|+| ++.|+.+
T Consensus 1389 ~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~i--vE~Gt~~ 1454 (1495)
T PLN03232 1389 RSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQV--LEYDSPQ 1454 (1495)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEE--EEECCHH
Confidence 9999999999999999987555 2 258999999999998865 999999999999 6677763
No 337
>PLN03130 ABC transporter C family member; Provisional
Probab=99.79 E-value=1.5e-18 Score=217.54 Aligned_cols=162 Identities=14% Similarity=0.240 Sum_probs=123.7
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------- 257 (701)
.++++|++++|.. +...+|+++ |++|+.++|+|++|||||||+++|.|++.|+.|+ +.+|+.+-
T Consensus 1237 ~I~f~nVsf~Y~~---~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~--I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1237 SIKFEDVVLRYRP---ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR--ILIDGCDISKFGLMDL 1311 (1622)
T ss_pred cEEEEEEEEEeCC---CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCce--EEECCEecccCCHHHH
Confidence 5899999999963 234689998 9999999999999999999999999999999986 55555320
Q ss_pred ---cccCCCCCC-------------C--------------CCchh-hh------c------cCCChhHHHHHHHHHHHcc
Q 005344 258 ---IGGDGDVPH-------------S--------------GIGRA-RR------M------QVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 258 ---Ia~~~~ip~-------------~--------------~ig~~-rr------~------~v~s~G~qQRV~IArAL~~ 294 (701)
++...+-|. . ++... .. . .-.|+|||||++||||+..
T Consensus 1312 R~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr 1391 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR 1391 (1622)
T ss_pred HhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 110000000 0 00000 00 0 1246799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 295 MPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
+|++||+||+|+++|..+...+ . ..|+|+|+++|..+.+.. ||++++|.+|+| ++.|+.+.
T Consensus 1392 ~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~I--vE~Gt~~e 1458 (1622)
T PLN03130 1392 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRV--VEFDTPEN 1458 (1622)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEE--EEeCCHHH
Confidence 9999999999999999987554 2 248999999999998865 899999999999 66777643
No 338
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=6.7e-19 Score=177.67 Aligned_cols=166 Identities=20% Similarity=0.275 Sum_probs=130.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccc------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIG------ 259 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa------ 259 (701)
|+.+.++++.|.+.......+|+++ |.+|+++.|||.||||||||++.|+|-+.+++|+ +.|++.+--.
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~--I~Idg~dVtk~~~~~R 78 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQ--ILIDGVDVTKKSVAKR 78 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCce--EEECceecccCCHHHH
Confidence 3567788888876555566788888 8999999999999999999999999999999998 7777752110
Q ss_pred -----------cCCCCCCC-------------------------------------CCch----hhhccCCChhHHHHHH
Q 005344 260 -----------GDGDVPHS-------------------------------------GIGR----ARRMQVPNVNMQHSVM 287 (701)
Q Consensus 260 -----------~~~~ip~~-------------------------------------~ig~----~rr~~v~s~G~qQRV~ 287 (701)
..+..+.. ++|. ..+++..|+|++|-+.
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQals 158 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALS 158 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHH
Confidence 00000100 1111 1245567899999999
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+.+|-.+.|++|++||-|++|||.....+ .+.+.|.+++||.+..+-.+.++.++++.|+|.--..+++
T Consensus 159 L~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~~ 235 (263)
T COG1101 159 LLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEE 235 (263)
T ss_pred HHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEccccc
Confidence 99999999999999999999999988543 5679999999999999999999999999999853324444
No 339
>cd02645 R3H_AAA R3H domain of a group of proteins with unknown function, who also contain a AAA-ATPase (AAA) domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA or ssRNA in a sequence-specific manner.
Probab=99.79 E-value=1.8e-19 Score=148.76 Aligned_cols=60 Identities=63% Similarity=0.870 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcCCCeeeecCCCChHHHHHHHHHHHHcCCceeeccCCCCceeEEec
Q 005344 596 DALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655 (701)
Q Consensus 596 ~al~e~~~ai~~~v~~~~~~vel~pr~~~i~~~q~~l~~~y~l~~~~~g~~~~~r~~i~p 655 (701)
+|||||+.||+||+.++|+||+|.|+++++|++||+++++|+|.|+|+|+||+|||+|+|
T Consensus 1 ~al~ea~~aa~~V~~~~~~~veL~Pm~~~eRri~H~~v~~~~l~s~S~G~ep~RrvvI~p 60 (60)
T cd02645 1 DALEEARLAIEQVVIPKGEPVELLPRSAYIRRLQHDLVERYQLRSESFGSEPNRRLRILP 60 (60)
T ss_pred CHHHHHHHHHHHHHhcCCceEEcCCCCHHHHHHHHHHHHHCCCeEEEecCCCCcEEEEeC
Confidence 499999999999999988999999999999999999999999999999999999999998
No 340
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=4.5e-19 Score=176.70 Aligned_cols=160 Identities=19% Similarity=0.298 Sum_probs=122.5
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccC---
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGD--- 261 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~--- 261 (701)
..+++.+|+++|+.+ .+|+++ +.+|+.-+||||||+||||+|-.|+|...|+.|+ +++++..++...
T Consensus 4 ~iL~~~~vsVsF~GF-----~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~--v~f~g~~dl~~~~e~ 76 (249)
T COG4674 4 IILYLDGVSVSFGGF-----KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGE--VLFDGDTDLTKLPEH 76 (249)
T ss_pred ceEEEeceEEEEcce-----eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcce--EEEcCchhhccCCHH
Confidence 467899999999954 788888 8999999999999999999999999999999998 788874333210
Q ss_pred -------C---CCCCC-------------------------------------------CCchh--hhccCCChhHHHHH
Q 005344 262 -------G---DVPHS-------------------------------------------GIGRA--RRMQVPNVNMQHSV 286 (701)
Q Consensus 262 -------~---~ip~~-------------------------------------------~ig~~--rr~~v~s~G~qQRV 286 (701)
+ ..|.. +++.. +.-...+-|+||++
T Consensus 77 ~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwL 156 (249)
T COG4674 77 RIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWL 156 (249)
T ss_pred HHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhh
Confidence 0 00100 00000 00112355999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHH---H---HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAAST---I---AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~---l---~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
.|.+.++++|++|++|||.+|+.-..... + ...+++|+++-|||.++..+++++-+++.|.+ ...|+-
T Consensus 157 EIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~V--L~EGsl 230 (249)
T COG4674 157 EIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSV--LAEGSL 230 (249)
T ss_pred hhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccce--eecccH
Confidence 99999999999999999999985544322 1 34578999999999999999999999999998 434443
No 341
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.78 E-value=1.5e-18 Score=215.75 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=116.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC-Cc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT-SN-------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~-~~-------- 256 (701)
.++++||+++|+.. ....+|+++ +++|+.++|+||||||||||+++|+|++.|+.|. +++++ .+
T Consensus 382 ~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~--I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR--KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGD--IIINDSHNLKDINLKW 457 (1466)
T ss_pred cEEEEEEEEEcCCC--CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCe--EEEeCCcchhhCCHHH
Confidence 58899999999731 123589998 9999999999999999999999999999999997 66632 21
Q ss_pred ---ccccCCCCCC-----------CC------------------------------------------------------
Q 005344 257 ---EIGGDGDVPH-----------SG------------------------------------------------------ 268 (701)
Q Consensus 257 ---EIa~~~~ip~-----------~~------------------------------------------------------ 268 (701)
.++....-+. .+
T Consensus 458 lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 537 (1466)
T PTZ00265 458 WRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537 (1466)
T ss_pred HHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhc
Confidence 1111000000 00
Q ss_pred --------------------Cchh-------------hhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHH
Q 005344 269 --------------------IGRA-------------RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST 315 (701)
Q Consensus 269 --------------------ig~~-------------rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~ 315 (701)
+... ..-.-.|+|||||++||||++++|++||+||||++||+.....
T Consensus 538 ~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred ccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 0000 0011257799999999999999999999999999999998854
Q ss_pred H-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCe
Q 005344 316 I-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 316 l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~ 347 (701)
+ .+ .|.|+|+++|+.+.+ ..||+++++.+|+
T Consensus 618 i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 618 VQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNRE 656 (1466)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCc
Confidence 4 22 489999999999988 5899999999974
No 342
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.78 E-value=6.8e-19 Score=174.03 Aligned_cols=165 Identities=19% Similarity=0.272 Sum_probs=120.8
Q ss_pred EEEEeEEEEECccc----ccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccccc--
Q 005344 190 MQVIGLTCRVGRAV----AGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGG-- 260 (701)
Q Consensus 190 IeI~nLs~rygr~v----~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~-- 260 (701)
+++.||++.|.... .....+++.+ +++|+.++|||.||||||||.|+|+|+++|++|+ +.+++..-.-+
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~--il~n~~~L~~~Dy 82 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGE--ILINDHPLHFGDY 82 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCce--EEECCccccccch
Confidence 45667776653110 1123455555 7899999999999999999999999999999997 55554321000
Q ss_pred ---------C------CCCCCCCCch--------------h-h---------h-----------ccCCChhHHHHHHHHH
Q 005344 261 ---------D------GDVPHSGIGR--------------A-R---------R-----------MQVPNVNMQHSVMIEA 290 (701)
Q Consensus 261 ---------~------~~ip~~~ig~--------------~-r---------r-----------~~v~s~G~qQRV~IAr 290 (701)
. ..-|...+|. . + . .+..+.|++|||++||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 0 0111111111 0 0 0 1123459999999999
Q ss_pred HHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 291 VENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 291 AL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
||..+|++||.||...+||...+..+ .+.|++-|.++.+...+..++|.+++|+.|.+ |+.|.+..
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~v--vE~G~t~~ 236 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEV--VERGSTAD 236 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCce--eecCChhh
Confidence 99999999999999999999887544 45699999999999999999999999999999 87888743
No 343
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.4e-18 Score=180.78 Aligned_cols=132 Identities=22% Similarity=0.286 Sum_probs=104.3
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc----------------------EEEEEcCCcccccCCCCCCC----
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------------RVVIVDTSNEIGGDGDVPHS---- 267 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------------rViiVd~~~EIa~~~~ip~~---- 267 (701)
+....+++|.|++|||||||+|+|+|++.|+.|. +|+||+|.. ..+||+
T Consensus 21 ~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDA-----RLFpH~tVrg 95 (352)
T COG4148 21 LPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDA-----RLFPHYTVRG 95 (352)
T ss_pred CCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecc-----ccccceEEec
Confidence 4444899999999999999999999999999874 344444432 123332
Q ss_pred ---------------------CCch-hhhc-cCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------
Q 005344 268 ---------------------GIGR-ARRM-QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------- 316 (701)
Q Consensus 268 ---------------------~ig~-~rr~-~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------- 316 (701)
+++. ..++ .-.|+|+||||+|+|||...|++|++|||.+.||..-..++
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~ 175 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLR 175 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHH
Confidence 1111 0122 23588999999999999999999999999999998777554
Q ss_pred HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEE
Q 005344 317 AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIES 350 (701)
Q Consensus 317 ~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~ 350 (701)
.+..+-|+++||.++++..++|++++|.+|++..
T Consensus 176 ~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A 209 (352)
T COG4148 176 DEINIPILYVSHSLDEVLRLADRVVVLENGKVKA 209 (352)
T ss_pred HhcCCCEEEEecCHHHHHhhhheEEEecCCeEEe
Confidence 4568999999999999999999999999999843
No 344
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.77 E-value=3.3e-18 Score=212.84 Aligned_cols=162 Identities=15% Similarity=0.240 Sum_probs=118.5
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC----------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD---------------------- 243 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp---------------------- 243 (701)
.+++++|+++|... ....+|+++ +++|+.++|+||+|||||||++.|.|++.|
T Consensus 1165 ~I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR--PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred eEEEEEEEEECCCC--CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 48899999999631 123689998 999999999999999999999999999998
Q ss_pred --------------------------------CCCcEEEEEcCCc-----------ccccCCCCCC--------------
Q 005344 244 --------------------------------DHMKRVVIVDTSN-----------EIGGDGDVPH-------------- 266 (701)
Q Consensus 244 --------------------------------~~GkrViiVd~~~-----------EIa~~~~ip~-------------- 266 (701)
+.|+ +.+|+.+ .++...+-|.
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~--I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGK--ILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK 1320 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCe--EEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCC
Confidence 3565 4454431 0111000000
Q ss_pred --C------------CCchh-h------hc------cCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH---
Q 005344 267 --S------------GIGRA-R------RM------QVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI--- 316 (701)
Q Consensus 267 --~------------~ig~~-r------r~------~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--- 316 (701)
. ++... . .+ .-.|+|||||++|||||+.+|++|||||||++||..+.+.+
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 0 00000 0 01 12578999999999999999999999999999999987554
Q ss_pred -Hh----cCCEEEEEEcChhHHHHhcCcEEEEeC----CeEEEEecCcH
Q 005344 317 -AQ----RGVQLVGTAHGMTIDNIVKNPSLQILV----GGIESVTLGDE 356 (701)
Q Consensus 317 -~e----~GvtVIiTTHd~~l~~~l~drvlvl~~----G~I~~V~lgd~ 356 (701)
.+ .|.|+|+++|..+.+. .||+++++.+ |++. ++.|.-
T Consensus 1401 L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv-~e~Gth 1447 (1466)
T PTZ00265 1401 IVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFV-QAHGTH 1447 (1466)
T ss_pred HHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEE-EEecCH
Confidence 22 4899999999998875 6999999998 8851 234544
No 345
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.77 E-value=2.6e-18 Score=197.88 Aligned_cols=152 Identities=18% Similarity=0.234 Sum_probs=112.1
Q ss_pred ccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC---CCc---------------EEEEEcCCccccc----
Q 005344 206 SAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADD---HMK---------------RVVIVDTSNEIGG---- 260 (701)
Q Consensus 206 ~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~---~Gk---------------rViiVd~~~EIa~---- 260 (701)
.+.+|+++ +++|++++|+|||||||||||++|+|...+. .|+ .++++.+.+.+-.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 45688888 8999999999999999999999999998764 453 1234443321100
Q ss_pred --------CCCCCC-----------------CCCchh--hhcc------CCChhHHHHHHHHHHHccCCCEEEEcCCCCc
Q 005344 261 --------DGDVPH-----------------SGIGRA--RRMQ------VPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307 (701)
Q Consensus 261 --------~~~ip~-----------------~~ig~~--rr~~------v~s~G~qQRV~IArAL~~~PdVIILDEPtsg 307 (701)
.-..+. .++... .... -.++|+|||+.||++++.+|+++++||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 000010 011110 1111 2578999999999999999999999999999
Q ss_pred ccHHHHHHH-------HhcCCEEEEEEcChh-HHHHhcCcEEEEeCCeEEEEecCcHHHH
Q 005344 308 LEALAASTI-------AQRGVQLVGTAHGMT-IDNIVKNPSLQILVGGIESVTLGDEEAK 359 (701)
Q Consensus 308 LD~~a~~~l-------~e~GvtVIiTTHd~~-l~~~l~drvlvl~~G~I~~V~lgd~~a~ 359 (701)
||+.++..+ ++.|.|+|+++|+.. .+..++|+++++.+|++ +..|+....
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~--v~~G~~~~~ 254 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRV--AYLGSPDQA 254 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeE--EEECCHHHH
Confidence 999998544 456999999999985 67889999999999998 556776443
No 346
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5.8e-18 Score=172.25 Aligned_cols=163 Identities=21% Similarity=0.267 Sum_probs=126.1
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcC--CCCCCcEEEEEcCCccc----
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARML--ADDHMKRVVIVDTSNEI---- 258 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlL--sp~~GkrViiVd~~~EI---- 258 (701)
.+++|+||.+++.. .+++|+++ |..|++.+|+||||||||||.+.|+|.- ..+.|+ +++++.+-.
T Consensus 2 ~~L~I~dLhv~v~~----~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~--I~~~GedI~~l~~ 75 (251)
T COG0396 2 MMLEIKDLHVEVEG----KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE--ILFDGEDILELSP 75 (251)
T ss_pred ceeEEeeeEEEecC----chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecce--EEECCcccccCCH
Confidence 46899999999982 24899998 9999999999999999999999999985 445677 666665311
Q ss_pred ---ccC---------CCCCCC----------------------------------CCch---hhhccC-CChhHHHHHHH
Q 005344 259 ---GGD---------GDVPHS----------------------------------GIGR---ARRMQV-PNVNMQHSVMI 288 (701)
Q Consensus 259 ---a~~---------~~ip~~----------------------------------~ig~---~rr~~v-~s~G~qQRV~I 288 (701)
+.. ..+|-. ++.. .+...+ .|+|+++|.-|
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHH
Confidence 000 000000 0000 001111 36799999999
Q ss_pred HHHHccCCCEEEEcCCCCcccHHHHHH-------HHhcCCEEEEEEcChhHHHHhc-CcEEEEeCCeEEEEecCcHHH
Q 005344 289 EAVENHMPETIIIDEIGTELEALAAST-------IAQRGVQLVGTAHGMTIDNIVK-NPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 289 ArAL~~~PdVIILDEPtsgLD~~a~~~-------l~e~GvtVIiTTHd~~l~~~l~-drvlvl~~G~I~~V~lgd~~a 358 (701)
..+++++|++.|||||-||||..+.+. +++.|.+++++||...+++.+. |.+.++.+|+| |..|+++-
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrI--v~sG~~el 231 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRI--VKSGDPEL 231 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEE--EecCCHHH
Confidence 999999999999999999999999854 4678999999999999998886 99999999999 88898843
No 347
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.77 E-value=4e-18 Score=211.44 Aligned_cols=165 Identities=21% Similarity=0.201 Sum_probs=118.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC---CCCCc--------------E
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA---DDHMK--------------R 248 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs---p~~Gk--------------r 248 (701)
.++++||++.|+.. .+...+|+++ +.+|++++|+|||||||||||++|+|++. +++|. +
T Consensus 759 ~l~~~nl~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 759 IFHWRNLTYEVKIK-KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred eEEEEeeEEEecCC-CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 57899999999521 1345789999 99999999999999999999999999987 45564 1
Q ss_pred EEEEcCCccc-ccC-----------CCCCCC-----------------CCchhhh--cc----CCChhHHHHHHHHHHHc
Q 005344 249 VVIVDTSNEI-GGD-----------GDVPHS-----------------GIGRARR--MQ----VPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 249 ViiVd~~~EI-a~~-----------~~ip~~-----------------~ig~~rr--~~----v~s~G~qQRV~IArAL~ 293 (701)
++++.|.... ... ...+.. ++..... .. -.|+|||||+.||++|+
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHH
Confidence 3333332110 000 000000 0000001 11 25789999999999999
Q ss_pred cCCC-EEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHH-HHhcCcEEEEeCC-eEEEEecCcH
Q 005344 294 HMPE-TIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTID-NIVKNPSLQILVG-GIESVTLGDE 356 (701)
Q Consensus 294 ~~Pd-VIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~-~~l~drvlvl~~G-~I~~V~lgd~ 356 (701)
.+|+ +|++||||++||..++..+ ++.|.|||+|+|+.+.. ...+|+++++..| ++ +..|+.
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~i--v~~G~~ 988 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQT--VYFGDL 988 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEE--EEECCc
Confidence 9997 9999999999999998544 56799999999999863 4679999999987 77 445554
No 348
>PTZ00243 ABC transporter; Provisional
Probab=99.77 E-value=4.7e-18 Score=212.65 Aligned_cols=162 Identities=15% Similarity=0.222 Sum_probs=122.8
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--cc---
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE--IG--- 259 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E--Ia--- 259 (701)
..|+++||+++|.. +...+|+++ |.+|+.++|+|++|||||||++.|.|++.|++|. +.+|+.+- +.
T Consensus 1307 G~I~f~nVsf~Y~~---~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~--I~IDG~di~~i~l~~ 1381 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE---GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGE--IRVNGREIGAYGLRE 1381 (1560)
T ss_pred CeEEEEEEEEEeCC---CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEECCEEcccCCHHH
Confidence 35899999999963 234589999 9999999999999999999999999999999886 55555320 00
Q ss_pred ---cCCCCCCC------------------------------CCchh-h------hc------cCCChhHHHHHHHHHHHc
Q 005344 260 ---GDGDVPHS------------------------------GIGRA-R------RM------QVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 260 ---~~~~ip~~------------------------------~ig~~-r------r~------~v~s~G~qQRV~IArAL~ 293 (701)
..+.+||. ++... . .. .-.|+|||||++||||+.
T Consensus 1382 LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL 1461 (1560)
T PTZ00243 1382 LRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALL 1461 (1560)
T ss_pred HHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHh
Confidence 00000110 00000 0 00 124779999999999999
Q ss_pred cC-CCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 294 HM-PETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 294 ~~-PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
++ |++|||||||+++|....+.+ . ..++|+|+++|..+.+. .||++++|.+|+| ++.|...
T Consensus 1462 ~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~-~~DrIlVLd~G~V--vE~Gt~~ 1529 (1560)
T PTZ00243 1462 KKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA-QYDKIIVMDHGAV--AEMGSPR 1529 (1560)
T ss_pred cCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH-hCCEEEEEECCEE--EEECCHH
Confidence 96 899999999999999987554 2 25899999999998875 6899999999999 6677763
No 349
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.77 E-value=6e-18 Score=211.60 Aligned_cols=161 Identities=15% Similarity=0.210 Sum_probs=122.7
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------- 257 (701)
.++++|++++|.. +...+|+++ |++|+.++|+|++|||||||++.|.|++.|+.|+ +.+|+.+-
T Consensus 1284 ~I~f~nVsf~Y~~---~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~--I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE---DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGE--IIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred cEEEEEEEEEeCC---CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCe--EEECCEEccccCHHHH
Confidence 5899999999973 123689998 9999999999999999999999999999999886 55555310
Q ss_pred ---cccCCCC-------------CCC--------------CC---------chhhhc----cCCChhHHHHHHHHHHHcc
Q 005344 258 ---IGGDGDV-------------PHS--------------GI---------GRARRM----QVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 258 ---Ia~~~~i-------------p~~--------------~i---------g~~rr~----~v~s~G~qQRV~IArAL~~ 294 (701)
++...+- |.. ++ |....+ .-.|+|||||++||||+..
T Consensus 1359 R~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred HhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence 1100000 000 00 000000 1246799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 295 MPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
+|++||+||||+++|..+...+ . ..++|+|+++|..+.+. -+|++++|.+|+| ++.|+.+
T Consensus 1439 ~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~-~~DrIlVld~G~I--vE~G~~~ 1504 (1522)
T TIGR00957 1439 KTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIM-DYTRVIVLDKGEV--AEFGAPS 1504 (1522)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEE--EEECCHH
Confidence 9999999999999999987544 2 25899999999998876 4899999999999 6677763
No 350
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.76 E-value=6.8e-18 Score=211.13 Aligned_cols=162 Identities=15% Similarity=0.209 Sum_probs=123.5
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----EEEEEcCCccccc
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-----RVVIVDTSNEIGG 260 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-----rViiVd~~~EIa~ 260 (701)
.++++++++.|+.. ...+|+++ +++|+.++|+||||||||||+++|+|++.|..|. +|.++.|..-+..
T Consensus 636 ~i~~~~~~~~~~~~---~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~ 712 (1522)
T TIGR00957 636 SITVHNATFTWARD---LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQN 712 (1522)
T ss_pred cEEEEEeEEEcCCC---CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccC
Confidence 68899999999731 23588888 8999999999999999999999999999999885 3566666532210
Q ss_pred C--------C-CCCCC---------CC---------chh----hhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCccc
Q 005344 261 D--------G-DVPHS---------GI---------GRA----RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELE 309 (701)
Q Consensus 261 ~--------~-~ip~~---------~i---------g~~----rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD 309 (701)
. + ..... .+ |.. .+-.-.|+|||||++||||+..+|+++|+|||+++||
T Consensus 713 ~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD 792 (1522)
T TIGR00957 713 DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792 (1522)
T ss_pred CcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 0 0 00000 00 000 0111257899999999999999999999999999999
Q ss_pred HHHHHHH----H-----hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 310 ALAASTI----A-----QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 310 ~~a~~~l----~-----e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+...+.+ . .+|.|+|++||+...+.. +|+++.+.+|++ +..|+.
T Consensus 793 ~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i--~~~g~~ 845 (1522)
T TIGR00957 793 AHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKI--SEMGSY 845 (1522)
T ss_pred HHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeE--EeeCCH
Confidence 9988554 1 247899999999998876 999999999998 445554
No 351
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.76 E-value=7.1e-18 Score=171.36 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=62.6
Q ss_pred CChhHHHHHHHHHHHccCC--CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE-----
Q 005344 278 PNVNMQHSVMIEAVENHMP--ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI----- 343 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~~~P--dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl----- 343 (701)
.|+||+||++||++++.+| ++||+||||++||+.++..+ ++.|.++|++||+.+++. +||+++++
T Consensus 138 LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l~~~~~ 216 (226)
T cd03270 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDIGPGAG 216 (226)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEeCCCcc
Confidence 5779999999999999998 59999999999999988544 456999999999999875 89999999
Q ss_pred -eCCeE
Q 005344 344 -LVGGI 348 (701)
Q Consensus 344 -~~G~I 348 (701)
..|+|
T Consensus 217 ~~~G~i 222 (226)
T cd03270 217 VHGGEI 222 (226)
T ss_pred ccCCEE
Confidence 78887
No 352
>PLN03232 ABC transporter C family member; Provisional
Probab=99.75 E-value=1.1e-17 Score=208.99 Aligned_cols=163 Identities=16% Similarity=0.157 Sum_probs=123.7
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------EEEEEcCCcccc
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSNEIG 259 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------rViiVd~~~EIa 259 (701)
.++++|++++|+.. ....+|+++ +++|+.++|+||+|||||||++.|+|.+.|..|. .|.++.|..-+-
T Consensus 614 ~I~~~~vsF~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 614 AISIKNGYFSWDSK--TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIF 691 (1495)
T ss_pred cEEEEeeEEEcCCC--CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccc
Confidence 58899999999731 124579988 9999999999999999999999999999998763 577887764331
Q ss_pred cC--------CC-CCC---------CCCch-------hhhc------cCCChhHHHHHHHHHHHccCCCEEEEcCCCCcc
Q 005344 260 GD--------GD-VPH---------SGIGR-------ARRM------QVPNVNMQHSVMIEAVENHMPETIIIDEIGTEL 308 (701)
Q Consensus 260 ~~--------~~-ip~---------~~ig~-------~rr~------~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgL 308 (701)
.. +. ... .++.. ...+ .-.|+|||||++||||+..+|+++|+|||+++|
T Consensus 692 ~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaL 771 (1495)
T PLN03232 692 NATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSAL 771 (1495)
T ss_pred cccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 10 00 000 00000 0011 125789999999999999999999999999999
Q ss_pred cHHHHHHH-----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 309 EALAASTI-----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 309 D~~a~~~l-----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|+...+.+ . ..|.|+|++||..+.. ..+|+++++.+|++ ++.|+.
T Consensus 772 D~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l-~~aD~Ii~L~~G~i--~~~Gt~ 823 (1495)
T PLN03232 772 DAHVAHQVFDSCMKDELKGKTRVLVTNQLHFL-PLMDRIILVSEGMI--KEEGTF 823 (1495)
T ss_pred CHHHHHHHHHHHhhhhhcCCEEEEEECChhhH-HhCCEEEEEeCCEE--EEecCH
Confidence 99877544 1 2579999999999876 46999999999999 555654
No 353
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.75 E-value=1.6e-17 Score=207.32 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=120.5
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC----------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS---------- 255 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~---------- 255 (701)
.++++||+++|.. +...+|+++ |++|+.++|+|++|||||||+++|+|++. .+|. +.+|+.
T Consensus 1217 ~I~f~nVs~~Y~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~--I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGE--IQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred eEEEEEEEEEeCC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcE--EEECCEEcccCCHHHH
Confidence 5889999999973 235689998 99999999999999999999999999997 5675 455543
Q ss_pred ----------cccccC----CCCCCC--------------CCchh-hhc------c------CCChhHHHHHHHHHHHcc
Q 005344 256 ----------NEIGGD----GDVPHS--------------GIGRA-RRM------Q------VPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 256 ----------~EIa~~----~~ip~~--------------~ig~~-rr~------~------v~s~G~qQRV~IArAL~~ 294 (701)
+.+-.. ...|.. ++... ..+ . ..|+|+||+++||||+..
T Consensus 1291 R~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred HhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence 211000 000000 00000 000 0 247799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|+||||||||+++|..+...+ . ..++|+|+++|.++.+.. +|++++|.+|+| ++.|.+
T Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~i--vE~g~p 1435 (1490)
T TIGR01271 1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSV--KQYDSI 1435 (1490)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEE--EEeCCH
Confidence 9999999999999999987555 2 358999999999988864 999999999999 667776
No 354
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.75 E-value=1.3e-17 Score=199.33 Aligned_cols=161 Identities=20% Similarity=0.298 Sum_probs=125.5
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------- 257 (701)
.++++||+++|+.. -...+++++ +..|+.++|+||+||||||.+-+|-+.+.|+.|+ +.+|+.+-
T Consensus 987 ~I~~~~V~F~YPsR--P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~--V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR--PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGK--VKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EEEEeeeEeeCCCC--CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe--EEECCcccccCCHHHH
Confidence 47899999999832 245688998 8999999999999999999999999999999997 77776521
Q ss_pred ---cccCCCCCCC-----------C--------Cchh----------------hhcc------CCChhHHHHHHHHHHHc
Q 005344 258 ---IGGDGDVPHS-----------G--------IGRA----------------RRMQ------VPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 258 ---Ia~~~~ip~~-----------~--------ig~~----------------rr~~------v~s~G~qQRV~IArAL~ 293 (701)
++..++-|.. + +-.+ -.+. -+++|||||++||||++
T Consensus 1063 R~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAil 1142 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAIL 1142 (1228)
T ss_pred HHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHH
Confidence 1111111110 0 0000 0111 24789999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 294 HMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
.+|++|+|||-|++||.++-+-+ +..|.|.|+++|-++.+ .-||.++++.+|+| ++.|+-
T Consensus 1143 RnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTI-qnaD~I~Vi~~G~V--vE~GtH 1208 (1228)
T KOG0055|consen 1143 RNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTI-QNADVIAVLKNGKV--VEQGTH 1208 (1228)
T ss_pred cCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhh-hcCCEEEEEECCEE--EecccH
Confidence 99999999999999999886433 45699999999999988 57999999999999 767665
No 355
>PLN03130 ABC transporter C family member; Provisional
Probab=99.74 E-value=1.6e-17 Score=208.43 Aligned_cols=163 Identities=17% Similarity=0.162 Sum_probs=123.5
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCC-Cc-----EEEEEcCCcccc
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDH-MK-----RVVIVDTSNEIG 259 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~-Gk-----rViiVd~~~EIa 259 (701)
.++++|++++|+.. ....+|+++ +++|+.++|+||+|||||||++.|+|.+.+.. |. +|.|+.|..-+.
T Consensus 614 ~I~~~nvsf~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lf 691 (1622)
T PLN03130 614 AISIKNGYFSWDSK--AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIF 691 (1622)
T ss_pred ceEEEeeEEEccCC--CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccC
Confidence 58899999999731 123579988 89999999999999999999999999999998 63 577887764331
Q ss_pred cC-------CCCCCC-----------CC---------chhh----hccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcc
Q 005344 260 GD-------GDVPHS-----------GI---------GRAR----RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTEL 308 (701)
Q Consensus 260 ~~-------~~ip~~-----------~i---------g~~r----r~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgL 308 (701)
.. .+.+.. ++ |... +-.-.|+|||||++||||+..+|+++|+|||+++|
T Consensus 692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL 771 (1622)
T PLN03130 692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771 (1622)
T ss_pred CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 10 000000 00 0000 11125789999999999999999999999999999
Q ss_pred cHHHHHHH-----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 309 EALAASTI-----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 309 D~~a~~~l-----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|+...+.+ . ..|.|+|++||...... .+|+++++.+|++ ++.|..
T Consensus 772 D~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i--~e~Gt~ 823 (1622)
T PLN03130 772 DAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMI--KEEGTY 823 (1622)
T ss_pred CHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEE--EEeCCH
Confidence 99876543 1 25899999999998764 6999999999999 455554
No 356
>PLN03140 ABC transporter G family member; Provisional
Probab=99.74 E-value=2.1e-17 Score=205.44 Aligned_cols=166 Identities=17% Similarity=0.142 Sum_probs=118.3
Q ss_pred eEEEEeEEEEECccc--------ccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC--CCCc--------
Q 005344 189 KMQVIGLTCRVGRAV--------AGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD--DHMK-------- 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v--------~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp--~~Gk-------- 247 (701)
.+..+||++.+.... .+...+|+++ +++|++++|+|||||||||||++|+|...+ ..|.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 578899998875211 1234689998 999999999999999999999999999763 3443
Q ss_pred -------EEEEEcCCccccc------------CCCCCC-----------------CCCchhhhc-------cCCChhHHH
Q 005344 248 -------RVVIVDTSNEIGG------------DGDVPH-----------------SGIGRARRM-------QVPNVNMQH 284 (701)
Q Consensus 248 -------rViiVd~~~EIa~------------~~~ip~-----------------~~ig~~rr~-------~v~s~G~qQ 284 (701)
.++++.|....-. ....+. .++...... .-.|+||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerk 1026 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK 1026 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHH
Confidence 1344444321100 000010 011100011 125789999
Q ss_pred HHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChh-HHHHhcCcEEEEeC-CeEEEEecCc
Q 005344 285 SVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMT-IDNIVKNPSLQILV-GGIESVTLGD 355 (701)
Q Consensus 285 RV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~-l~~~l~drvlvl~~-G~I~~V~lgd 355 (701)
|+.||++|+.+|++|++||||++||+.++..+ ++.|.|||+|+|+.+ .+..++|+++++.. |++ +..|+
T Consensus 1027 RvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~--v~~G~ 1104 (1470)
T PLN03140 1027 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV--IYSGP 1104 (1470)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE--EEECC
Confidence 99999999999999999999999999998544 567999999999998 46678999999986 777 44454
Q ss_pred H
Q 005344 356 E 356 (701)
Q Consensus 356 ~ 356 (701)
.
T Consensus 1105 ~ 1105 (1470)
T PLN03140 1105 L 1105 (1470)
T ss_pred c
Confidence 3
No 357
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.74 E-value=1.3e-17 Score=199.04 Aligned_cols=161 Identities=17% Similarity=0.254 Sum_probs=125.8
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccc------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEI------ 258 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EI------ 258 (701)
..+.+.+|++.|+.. ..+++++ |++||+++++|+|||||||++++|.|..+|++|. +++.+..--
T Consensus 563 ~~~~~~~L~k~y~~~----~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~--a~i~g~~i~~~~~~~ 636 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGK----DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGE--ALIKGHDITVSTDFQ 636 (885)
T ss_pred ceEEEcceeeeecch----hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcce--EEEecCccccccchh
Confidence 467789999999854 1278887 9999999999999999999999999999999997 555433110
Q ss_pred ---ccCCCCCCC-------------------------CCch-------------h--hhccCCChhHHHHHHHHHHHccC
Q 005344 259 ---GGDGDVPHS-------------------------GIGR-------------A--RRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 259 ---a~~~~ip~~-------------------------~ig~-------------~--rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
...+..|+. ++.. . ......++|+++|+.+|.+++.+
T Consensus 637 ~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~ 716 (885)
T KOG0059|consen 637 QVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGD 716 (885)
T ss_pred hhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcC
Confidence 011223332 1100 0 11223467999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 296 PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++|++|||++|+||.+++.+ ++.|..+|+|||.+++++.+|+++.+|..|++.. .|..
T Consensus 717 p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~c--iGs~ 782 (885)
T KOG0059|consen 717 PSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRC--IGSP 782 (885)
T ss_pred CCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEE--ecCh
Confidence 999999999999999999665 5556699999999999999999999999999944 4555
No 358
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.73 E-value=2.3e-17 Score=205.95 Aligned_cols=146 Identities=14% Similarity=0.110 Sum_probs=110.6
Q ss_pred ceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----EEEEEcCCcccccC-------CCCCCC-----
Q 005344 208 EIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-----RVVIVDTSNEIGGD-------GDVPHS----- 267 (701)
Q Consensus 208 ~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-----rViiVd~~~EIa~~-------~~ip~~----- 267 (701)
.+|+++ +.+|+.++|+|||||||||||++|+|++.|+.|. +|.|+.+...+... -..+..
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~ 519 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYT 519 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHH
Confidence 478887 8899999999999999999999999999999885 35566655322100 000000
Q ss_pred ------CCchh-------h------hccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHH-------hcCC
Q 005344 268 ------GIGRA-------R------RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIA-------QRGV 321 (701)
Q Consensus 268 ------~ig~~-------r------r~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~-------e~Gv 321 (701)
++... . +-.-.++|||||++||||+..+|+++|+|||+++||+.....+. ..|.
T Consensus 520 ~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~ 599 (1490)
T TIGR01271 520 SVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNK 599 (1490)
T ss_pred HHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 00000 0 11235789999999999999999999999999999999985552 2489
Q ss_pred EEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 322 QLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 322 tVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|+|++||+...+.. ||+++.+.+|++ +..|..
T Consensus 600 tvilvtH~~~~~~~-ad~ii~l~~g~i--~~~g~~ 631 (1490)
T TIGR01271 600 TRILVTSKLEHLKK-ADKILLLHEGVC--YFYGTF 631 (1490)
T ss_pred eEEEEeCChHHHHh-CCEEEEEECCEE--EEEcCH
Confidence 99999999998865 999999999998 444554
No 359
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.72 E-value=5.9e-17 Score=179.10 Aligned_cols=158 Identities=19% Similarity=0.258 Sum_probs=116.6
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.+.++++++-=.. ..+.+++++ +.+|+.++||||+|||||||.|.|.|...|.+|.
T Consensus 334 ~L~Ve~l~~~PPg---~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~ 410 (580)
T COG4618 334 ALSVERLTAAPPG---QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410 (580)
T ss_pred eeeEeeeeecCCC---CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcc
Confidence 3678888873331 234688998 8999999999999999999999999999998864
Q ss_pred EEEEEcCCccccc-C--CCCCCCC-------------------------Cchhhhc----cCCChhHHHHHHHHHHHccC
Q 005344 248 RVVIVDTSNEIGG-D--GDVPHSG-------------------------IGRARRM----QVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 rViiVd~~~EIa~-~--~~ip~~~-------------------------ig~~rr~----~v~s~G~qQRV~IArAL~~~ 295 (701)
+|+|.+|.-|+-. . ..+.+++ -|..... ...|+|+|||+++|||+..+
T Consensus 411 hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~ 490 (580)
T COG4618 411 HIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGD 490 (580)
T ss_pred ccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCC
Confidence 4455544432200 0 0000000 0000000 02467999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHH-------HHHhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEE
Q 005344 296 PETIIIDEIGTELEALAAS-------TIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIES 350 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~-------~l~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~ 350 (701)
|.++++|||-++||...-. .++.+|.++|+++|-.+.. ..+|++++|.+|++..
T Consensus 491 P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L-~~~Dkilvl~~G~~~~ 551 (580)
T COG4618 491 PFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSAL-ASVDKILVLQDGRIAA 551 (580)
T ss_pred CcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHH-hhcceeeeecCChHHh
Confidence 9999999999999987653 3378899999999998887 5789999999999854
No 360
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.6e-17 Score=164.74 Aligned_cols=136 Identities=24% Similarity=0.299 Sum_probs=100.0
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccc------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIG------ 259 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa------ 259 (701)
+++.++|++.-+ ...++.++ +..|+.+-|.||||||||||||+|+|++.|+.|. +++.+.+--.
T Consensus 2 ~L~a~~L~~~R~-----e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~--v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 2 MLEAENLSCERG-----ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGE--VYWQGEPIQNVRESYH 74 (209)
T ss_pred cchhhhhhhccC-----cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCe--EEecCCCCccchhhHH
Confidence 456677777665 34677777 8899999999999999999999999999999998 6666432100
Q ss_pred -cCCCCCC--------------------------C---------CCchhh--hccCCChhHHHHHHHHHHHccCCCEEEE
Q 005344 260 -GDGDVPH--------------------------S---------GIGRAR--RMQVPNVNMQHSVMIEAVENHMPETIII 301 (701)
Q Consensus 260 -~~~~ip~--------------------------~---------~ig~~r--r~~v~s~G~qQRV~IArAL~~~PdVIIL 301 (701)
.+-.+-| . ++.... .+...|.|||+|++||+..+..+++.|+
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiL 154 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWIL 154 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceee
Confidence 0000000 0 000000 1122467999999999999999999999
Q ss_pred cCCCCcccHHHHHHH-------HhcCCEEEEEEcChh
Q 005344 302 DEIGTELEALAASTI-------AQRGVQLVGTAHGMT 331 (701)
Q Consensus 302 DEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~ 331 (701)
|||+++||......+ +.+|--||+|||..-
T Consensus 155 DEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 155 DEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred cCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 999999999988554 567889999999653
No 361
>PTZ00243 ABC transporter; Provisional
Probab=99.70 E-value=8.1e-17 Score=201.73 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=112.4
Q ss_pred cceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----EEEEEcCCcccccC-------CCCCC-----
Q 005344 207 AEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-----RVVIVDTSNEIGGD-------GDVPH----- 266 (701)
Q Consensus 207 ~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-----rViiVd~~~EIa~~-------~~ip~----- 266 (701)
..+|+++ +.+|++++|+|||||||||||++|+|++.|+.|. +|.++.+...+... ...+.
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~ 752 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARL 752 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHH
Confidence 3578877 8899999999999999999999999999998884 56777776433110 00000
Q ss_pred ------CCC---------ch----hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcC
Q 005344 267 ------SGI---------GR----ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRG 320 (701)
Q Consensus 267 ------~~i---------g~----~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~G 320 (701)
.++ |. ..+..-.|+|||||++||||+..+|+++|+|||+++||+.....+ ...|
T Consensus 753 ~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~ 832 (1560)
T PTZ00243 753 ADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAG 832 (1560)
T ss_pred HHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCC
Confidence 000 00 011223578999999999999999999999999999999876433 2258
Q ss_pred CEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 321 VQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 321 vtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
.|+|++||+.+.+. .+|+++.+.+|++ +..|..+
T Consensus 833 ~TvIlvTH~~~~~~-~ad~ii~l~~G~i--~~~G~~~ 866 (1560)
T PTZ00243 833 KTRVLATHQVHVVP-RADYVVALGDGRV--EFSGSSA 866 (1560)
T ss_pred CEEEEEeCCHHHHH-hCCEEEEEECCEE--EEecCHH
Confidence 99999999999985 6999999999998 4455543
No 362
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.70 E-value=7.9e-17 Score=200.05 Aligned_cols=150 Identities=16% Similarity=0.152 Sum_probs=108.0
Q ss_pred cceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcC----CCCCCc-----------------EEEEEcCCcccc---
Q 005344 207 AEIICDL---VEGGGSILVIGPPGVGKTTLIREIARML----ADDHMK-----------------RVVIVDTSNEIG--- 259 (701)
Q Consensus 207 ~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlL----sp~~Gk-----------------rViiVd~~~EIa--- 259 (701)
+.+|+++ +++|++++|+||||||||||||+|+|++ .+..|. .++++.+....-
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 3567777 8899999999999999999999999986 345553 134444432110
Q ss_pred ---------cCCCCCC----------------------CCCchhhhc-------cCCChhHHHHHHHHHHHccCCCEEEE
Q 005344 260 ---------GDGDVPH----------------------SGIGRARRM-------QVPNVNMQHSVMIEAVENHMPETIII 301 (701)
Q Consensus 260 ---------~~~~ip~----------------------~~ig~~rr~-------~v~s~G~qQRV~IArAL~~~PdVIIL 301 (701)
.....|. .++...... .-.|+|||||+.||++++.+|+++++
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlll 233 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW 233 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEE
Confidence 0000000 000000000 11478999999999999999999999
Q ss_pred cCCCCcccHHHHHHH-------Hh-cCCEEEEEEcCh-hHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 302 DEIGTELEALAASTI-------AQ-RGVQLVGTAHGM-TIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 302 DEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~-~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
||||++||+.++..+ ++ .|.++|+++|+. +.+..++|+++++.+|++ +..|+...
T Consensus 234 DEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~i--v~~G~~~~ 297 (1394)
T TIGR00956 234 DNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQ--IYFGPADK 297 (1394)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeE--EEECCHHH
Confidence 999999999998544 43 599999999996 678889999999999998 55566543
No 363
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.70 E-value=1.2e-16 Score=160.48 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=100.9
Q ss_pred eEEEEeEEEEECcccccccceec-cccccCCEEEEEcCCCCcHHHHHHHHHhcC-CCCCCc-----------------EE
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIIC-DLVEGGGSILVIGPPGVGKTTLIREIARML-ADDHMK-----------------RV 249 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~-dlI~~GeiilIIGPNGSGKTTLLR~IaGlL-sp~~Gk-----------------rV 249 (701)
.++++|+. .|.. ...+. ....+|++++|+|||||||||||++|++.+ .+..+. .|
T Consensus 5 ~i~l~nf~-~y~~-----~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFRE-----EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEV 78 (213)
T ss_pred EEEEECCc-CcCC-----ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEE
Confidence 45677776 4432 12222 113458899999999999999999999644 222111 12
Q ss_pred EEEcCCccccc----CCCC-----------CCCCCchh--hhccCCChhHHHHHHHHHHHcc----------CCCEEEEc
Q 005344 250 VIVDTSNEIGG----DGDV-----------PHSGIGRA--RRMQVPNVNMQHSVMIEAVENH----------MPETIIID 302 (701)
Q Consensus 250 iiVd~~~EIa~----~~~i-----------p~~~ig~~--rr~~v~s~G~qQRV~IArAL~~----------~PdVIILD 302 (701)
.++.+..+... ...+ ++..+... ....-.++|++|+++|++++++ +|++||+|
T Consensus 79 ~~~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllD 158 (213)
T cd03279 79 SFTFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFID 158 (213)
T ss_pred EEEEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEe
Confidence 22222111100 0000 00001100 1122357799999999999975 57899999
Q ss_pred CCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 303 EIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 303 EPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
||+++||+.....+ ++.|.++|++||+.+++..++++++++.+|+.
T Consensus 159 Ep~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 159 EGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 99999999887544 34589999999999999999999999999874
No 364
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.69 E-value=1.5e-16 Score=158.92 Aligned_cols=129 Identities=12% Similarity=0.213 Sum_probs=90.3
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCC------------------------cEEEEEcCCcccccCCCCCCCCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHM------------------------KRVVIVDTSNEIGGDGDVPHSGI 269 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~G------------------------krViiVd~~~EIa~~~~ip~~~i 269 (701)
+.+| +++|+||||||||||+++|++++.+..+ .+|.++.+...... ...+...+
T Consensus 20 ~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~-~~~~~~~~ 97 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY-SIISQGDV 97 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce-eEEehhhH
Confidence 5677 9999999999999999999999755421 23444444322210 00000000
Q ss_pred ------ch--hhhccCCChhHHHHHHHHHHHc----cCCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChh
Q 005344 270 ------GR--ARRMQVPNVNMQHSVMIEAVEN----HMPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMT 331 (701)
Q Consensus 270 ------g~--~rr~~v~s~G~qQRV~IArAL~----~~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~ 331 (701)
.. .+...-.++|++||++|+++++ ..|+++|+|||+++||+.....+ . ..+.++|++||+.+
T Consensus 98 ~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~ 177 (197)
T cd03278 98 SEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKG 177 (197)
T ss_pred HHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 00 1122335789999999999986 45699999999999999988554 1 23789999999999
Q ss_pred HHHHhcCcEEEEeC
Q 005344 332 IDNIVKNPSLQILV 345 (701)
Q Consensus 332 l~~~l~drvlvl~~ 345 (701)
++. +||+++.+..
T Consensus 178 ~~~-~~d~v~~~~~ 190 (197)
T cd03278 178 TME-AADRLYGVTM 190 (197)
T ss_pred HHh-hcceEEEEEe
Confidence 874 7999887763
No 365
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.68 E-value=4.4e-16 Score=177.11 Aligned_cols=148 Identities=19% Similarity=0.321 Sum_probs=111.7
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEcCCc
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVDTSN 256 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd~~~ 256 (701)
+..+.++||++.-+. ....|+++ +.+|+.++|.|+||||||||+|+|+|+-+-..|+ .+.+++|++
T Consensus 390 ~~~i~~~nl~l~~p~----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~P 465 (604)
T COG4178 390 DHGITLENLSLRTPD----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRP 465 (604)
T ss_pred cceeEEeeeeEECCC----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCC
Confidence 678899999998873 33678877 8999999999999999999999999999877664 345556554
Q ss_pred ccccC-----CCCCCC----------------CCch--------hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCc
Q 005344 257 EIGGD-----GDVPHS----------------GIGR--------ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307 (701)
Q Consensus 257 EIa~~-----~~ip~~----------------~ig~--------~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsg 307 (701)
.+..- -.+|.. +++. .+--.++++|+|||+++||++.|+|+++++||-|++
T Consensus 466 Y~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA 545 (604)
T COG4178 466 YLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA 545 (604)
T ss_pred CCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc
Confidence 33110 001111 1111 011235788999999999999999999999999999
Q ss_pred ccHHHHHHH----Hh--cCCEEEEEEcChhHHHHhcC
Q 005344 308 LEALAASTI----AQ--RGVQLVGTAHGMTIDNIVKN 338 (701)
Q Consensus 308 LD~~a~~~l----~e--~GvtVIiTTHd~~l~~~l~d 338 (701)
||......+ ++ .++++|.++|...+......
T Consensus 546 LDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 546 LDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred cChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhh
Confidence 999988554 44 59999999998877655444
No 366
>PLN03140 ABC transporter G family member; Provisional
Probab=99.67 E-value=2.5e-16 Score=195.91 Aligned_cols=151 Identities=18% Similarity=0.190 Sum_probs=110.9
Q ss_pred cceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC---CCc---------------EEEEEcCCcccc------
Q 005344 207 AEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADD---HMK---------------RVVIVDTSNEIG------ 259 (701)
Q Consensus 207 ~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~---~Gk---------------rViiVd~~~EIa------ 259 (701)
..+|+++ +++|++++|+|||||||||||++|+|.+.++ .|+ .++++.+....-
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 3578888 8999999999999999999999999999876 453 245555442110
Q ss_pred -------cCCCCC----------C-------------------------------------CCCchhh-------hccCC
Q 005344 260 -------GDGDVP----------H-------------------------------------SGIGRAR-------RMQVP 278 (701)
Q Consensus 260 -------~~~~ip----------~-------------------------------------~~ig~~r-------r~~v~ 278 (701)
.+.... . .++.... ...-.
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 000000 0 0010000 01124
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcCh-hHHHHhcCcEEEEeCCeEE
Q 005344 279 NVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGM-TIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 279 s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~-~l~~~l~drvlvl~~G~I~ 349 (701)
|+|||||+.||++++.+|+++++||||+|||..++..+ ++ .|.|+|+++|+. ..+..++|+++++.+|++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i- 416 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI- 416 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE-
Confidence 67999999999999999999999999999999998544 33 589999999985 577889999999999998
Q ss_pred EEecCcHHHH
Q 005344 350 SVTLGDEEAK 359 (701)
Q Consensus 350 ~V~lgd~~a~ 359 (701)
+..|.....
T Consensus 417 -vy~G~~~~~ 425 (1470)
T PLN03140 417 -VYQGPRDHI 425 (1470)
T ss_pred -EEeCCHHHH
Confidence 556665443
No 367
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=2.3e-16 Score=154.73 Aligned_cols=154 Identities=23% Similarity=0.341 Sum_probs=114.6
Q ss_pred eEEEEeEEEEECccccccc--ceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc------
Q 005344 189 KMQVIGLTCRVGRAVAGSA--EIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE------ 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~--~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E------ 257 (701)
.+.+++++|.|--...++. .+++++ ++.||++++-||+|+|||||||+|-+-+.|++|+ +.+.-..+
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~--I~v~H~g~~vdl~~ 81 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQ--ILVRHEGEWVDLVT 81 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCce--EEEEeCcchhhhhc
Confidence 5678888888853322332 467777 8999999999999999999999999999999998 44432211
Q ss_pred -------------cccC----CCCCCC-------------CCch----------hhhccC-----------CChhHHHHH
Q 005344 258 -------------IGGD----GDVPHS-------------GIGR----------ARRMQV-----------PNVNMQHSV 286 (701)
Q Consensus 258 -------------Ia~~----~~ip~~-------------~ig~----------~rr~~v-----------~s~G~qQRV 286 (701)
|++. .-+|.. ++.. ..++.+ .++|+||||
T Consensus 82 a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV 161 (235)
T COG4778 82 AEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRV 161 (235)
T ss_pred cChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheeh
Confidence 1110 111211 1110 012222 367999999
Q ss_pred HHHHHHccCCCEEEEcCCCCcccHHHHHH-------HHhcCCEEEEEEcChhHHHHhcCcEEEEe
Q 005344 287 MIEAVENHMPETIIIDEIGTELEALAAST-------IAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsgLD~~a~~~-------l~e~GvtVIiTTHd~~l~~~l~drvlvl~ 344 (701)
-|||.++.+-.+|++||||+.||+.++.. .+.+|..+|.+-||.+.-+.+||+++.+.
T Consensus 162 NIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 162 NIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred hhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 99999999999999999999999988743 26789999999999999999999987764
No 368
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.65 E-value=9.5e-16 Score=168.43 Aligned_cols=162 Identities=22% Similarity=0.338 Sum_probs=123.2
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccc-----
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEI----- 258 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EI----- 258 (701)
...++++|+++.|.. .+.+|+|+ +.+|+.++|+||+|+||||+||.+-+.....+|. +.+|+.+--
T Consensus 535 ~G~i~fsnvtF~Y~p----~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGs--I~iDgqdIrnvt~~ 608 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDP----GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGS--ITIDGQDIRNVTQS 608 (790)
T ss_pred CCeEEEEEeEEecCC----CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCce--EEEcCchHHHHHHH
Confidence 346789999999983 46889998 8999999999999999999999999999888886 666654210
Q ss_pred ---ccCCCCCCC-----------------CCch-------------hhhccC--------------CChhHHHHHHHHHH
Q 005344 259 ---GGDGDVPHS-----------------GIGR-------------ARRMQV--------------PNVNMQHSVMIEAV 291 (701)
Q Consensus 259 ---a~~~~ip~~-----------------~ig~-------------~rr~~v--------------~s~G~qQRV~IArA 291 (701)
...+-+|+- ..+. .+.+++ .++|+||||+|||+
T Consensus 609 SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARt 688 (790)
T KOG0056|consen 609 SLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIART 688 (790)
T ss_pred HHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHH
Confidence 000111210 0000 011122 36799999999999
Q ss_pred HccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 292 ENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 292 L~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
+...|.+|++||.|++||...-+.+ .-.+.|-|+++|.++.+ .-+|.++++.+|+| ++.|.-+
T Consensus 689 iLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTi-vnAD~ILvi~~G~I--vErG~He 757 (790)
T KOG0056|consen 689 ILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTI-VNADLILVISNGRI--VERGRHE 757 (790)
T ss_pred HhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehhe-ecccEEEEEeCCeE--eecCcHH
Confidence 9999999999999999998776555 23488999999998876 46899999999999 6666553
No 369
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.65 E-value=9.8e-16 Score=176.70 Aligned_cols=165 Identities=19% Similarity=0.256 Sum_probs=118.8
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC---CCcEEEEEcC--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADD---HMKRVVIVDT-------- 254 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~---~GkrViiVd~-------- 254 (701)
.+...++++.........+.+|+++ +++|++++|+||+||||||||++|+|..... +|. +.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~--ilvNG~~~~~~~~ 102 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGE--ILLNGRPRDSRSF 102 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEE--EEECCccCchhhh
Confidence 3456777777654322356789999 8999999999999999999999999999753 343 44444
Q ss_pred ---------Cccccc------------CCCCCC-----------------CCCchhhhccC-------CChhHHHHHHHH
Q 005344 255 ---------SNEIGG------------DGDVPH-----------------SGIGRARRMQV-------PNVNMQHSVMIE 289 (701)
Q Consensus 255 ---------~~EIa~------------~~~ip~-----------------~~ig~~rr~~v-------~s~G~qQRV~IA 289 (701)
.+-... .-..|. .++...+...+ .++|+++|++||
T Consensus 103 ~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia 182 (613)
T KOG0061|consen 103 RKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIA 182 (613)
T ss_pred hheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHH
Confidence 321100 000111 01111111111 467999999999
Q ss_pred HHHccCCCEEEEcCCCCcccHHHHH-------HHHhcCCEEEEEEcChh-HHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 290 AVENHMPETIIIDEIGTELEALAAS-------TIAQRGVQLVGTAHGMT-IDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 290 rAL~~~PdVIILDEPtsgLD~~a~~-------~l~e~GvtVIiTTHd~~-l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
.=+.++|.+|++||||+|||...+. .+++.|.+||+|-|... .+-.+-|+++.+..|++ +-.|.+.
T Consensus 183 ~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~--vy~G~~~ 256 (613)
T KOG0061|consen 183 LELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEV--VYSGSPR 256 (613)
T ss_pred HHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcE--EEecCHH
Confidence 9999999999999999999999883 34677999999999874 45567789999999988 6677773
No 370
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.64 E-value=1.3e-15 Score=147.11 Aligned_cols=136 Identities=19% Similarity=0.301 Sum_probs=101.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCC---Cc---------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDH---MK--------------- 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~---Gk--------------- 247 (701)
++.++|++.+.+ ...+|-++ |.+||++-|+||+|||||||+.-++|.+.+.. |+
T Consensus 2 ~l~l~nvsl~l~-----g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRLP-----GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecCC-----CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 467889988776 34566666 99999999999999999999999999998763 32
Q ss_pred -EEEEEcCCcccccCCCCCCCCCch-------------hhh-------------------ccCCChhHHHHHHHHHHHcc
Q 005344 248 -RVVIVDTSNEIGGDGDVPHSGIGR-------------ARR-------------------MQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 -rViiVd~~~EIa~~~~ip~~~ig~-------------~rr-------------------~~v~s~G~qQRV~IArAL~~ 294 (701)
+++++.+.. -.+||..++. +++ -...++|++.||++.|+|..
T Consensus 77 Rq~GiLFQD~-----lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla 151 (213)
T COG4136 77 RQIGILFQDA-----LLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA 151 (213)
T ss_pred hheeeeeccc-----ccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHh
Confidence 222222221 1223332221 111 01246799999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHH
Q 005344 295 MPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDN 334 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~ 334 (701)
.|+.+++|||++.||..-+..+ ...|+-.|.+|||...+.
T Consensus 152 ~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 152 QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 9999999999999999887443 667999999999987664
No 371
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.63 E-value=4.3e-15 Score=155.13 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=62.2
Q ss_pred CChhHHHHHHHHHHHccC---CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE----
Q 005344 278 PNVNMQHSVMIEAVENHM---PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI---- 343 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~~~---PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl---- 343 (701)
.|+|++||+.||+++..+ |+++|+|||+++||+.....+ .+.|.++|+++|+.+++. .+|+++.+
T Consensus 170 LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ii~Lgp~~ 248 (261)
T cd03271 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWIIDLGPEG 248 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCc
Confidence 477999999999999996 799999999999999998544 456999999999999986 69999999
Q ss_pred --eCCeE
Q 005344 344 --LVGGI 348 (701)
Q Consensus 344 --~~G~I 348 (701)
..|+|
T Consensus 249 g~~~G~i 255 (261)
T cd03271 249 GDGGGQV 255 (261)
T ss_pred CCCCCEE
Confidence 67777
No 372
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=3.3e-16 Score=173.31 Aligned_cols=158 Identities=16% Similarity=0.222 Sum_probs=109.6
Q ss_pred ccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhc---CCCCCCcEEEEEcCC----
Q 005344 186 RNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARM---LADDHMKRVVIVDTS---- 255 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGl---Lsp~~GkrViiVd~~---- 255 (701)
+..-|.+.+++..|| .+.+|.+- +..|.-++|+|+||+|||||||+|+.- .-+.. +.+...+..
T Consensus 77 ~~~Di~~~~fdLa~G-----~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~ve-qE~~g~~t~~~~~ 150 (582)
T KOG0062|consen 77 KSKDIHIDNFDLAYG-----GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVE-QEVRGDDTEALQS 150 (582)
T ss_pred cccceeeeeeeeeec-----chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCch-hheeccchHHHhh
Confidence 334466788888888 34667654 889999999999999999999999981 10110 001111110
Q ss_pred ---------------cccccC---CCCC---CCCCchh-----hhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCccc
Q 005344 256 ---------------NEIGGD---GDVP---HSGIGRA-----RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELE 309 (701)
Q Consensus 256 ---------------~EIa~~---~~ip---~~~ig~~-----rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD 309 (701)
.++... ..+. -.++|-. ..+.-.|+|.+.|++||||+..+||+|+|||||+.||
T Consensus 151 ~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLD 230 (582)
T KOG0062|consen 151 VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLD 230 (582)
T ss_pred hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccch
Confidence 000000 0000 0011111 1223357899999999999999999999999999999
Q ss_pred HHHHHH----HHhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 310 ALAAST----IAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 310 ~~a~~~----l~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
..+..- +...+.|+|+++||.++.+.+|..|+-++.-++.
T Consensus 231 v~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~ 274 (582)
T KOG0062|consen 231 VVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLD 274 (582)
T ss_pred hHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhh
Confidence 999844 4667899999999999999999999888776664
No 373
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.62 E-value=3.1e-15 Score=166.42 Aligned_cols=155 Identities=21% Similarity=0.219 Sum_probs=114.2
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccc-------
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIG------- 259 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa------- 259 (701)
+.+.++++.|.+ ..+++|. +..|+.++|+|+|||||||+|++|+|-..|..-. +.+..-..++.
T Consensus 76 vk~~sls~s~~g-----~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~-~d~y~ls~e~~ps~~~av 149 (614)
T KOG0927|consen 76 VKIESLSLSFHG-----VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEH-IDFYLLSREIEPSEKQAV 149 (614)
T ss_pred ceeeeeeeccCC-----ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcc-cchhhhcccCCCchHHHH
Confidence 458899999873 4788888 8899999999999999999999999998875421 11111111110
Q ss_pred -----------------------cCCCCCC--------------------------CCCch-----hhhccCCChhHHHH
Q 005344 260 -----------------------GDGDVPH--------------------------SGIGR-----ARRMQVPNVNMQHS 285 (701)
Q Consensus 260 -----------------------~~~~ip~--------------------------~~ig~-----~rr~~v~s~G~qQR 285 (701)
.+.+..+ .+++- .+...-.|+|++.|
T Consensus 150 ~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR 229 (614)
T KOG0927|consen 150 QAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMR 229 (614)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHH
Confidence 0000000 01110 01122247799999
Q ss_pred HHHHHHHccCCCEEEEcCCCCcccHHHHHHH----HhcCC-EEEEEEcChhHHHHhcCcEEEEeCCeEEE
Q 005344 286 VMIEAVENHMPETIIIDEIGTELEALAASTI----AQRGV-QLVGTAHGMTIDNIVKNPSLQILVGGIES 350 (701)
Q Consensus 286 V~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~e~Gv-tVIiTTHd~~l~~~l~drvlvl~~G~I~~ 350 (701)
++||++|..+|++|+|||||++||..+..-+ ++... ++|+++|..+.++.+|..|+-+..+...+
T Consensus 230 ~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~ 299 (614)
T KOG0927|consen 230 AALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIY 299 (614)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceee
Confidence 9999999999999999999999999998544 55555 89999999999999999999999988533
No 374
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.62 E-value=4.3e-15 Score=158.02 Aligned_cols=221 Identities=15% Similarity=0.184 Sum_probs=135.7
Q ss_pred cCCCCeEEEEEeCC-CceEEecCCCceeeccccCCHHHHHHHHHHHhcccc----cCCCccc---cccchhhhhccceEE
Q 005344 120 RELGDLIEVVMDLG-RKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSD----DNRSGID---RSLHRISAIRNRKMQ 191 (701)
Q Consensus 120 ~~~~~l~EI~L~~G-R~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs~----d~R~Gi~---rtghRIs~ir~~~Ie 191 (701)
.+++++.||.++.+ ..|+. ..++........++.+++..+++.++.++. ..++.+. ++++||..+..+...
T Consensus 2 l~d~~v~eI~in~~~~v~v~-~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~p~~~~~l~~g~Rv~~~~~p~~~ 80 (308)
T TIGR02788 2 LDDEDVTEICINRPGEVWVE-GPGGWQRFDVPDLTFSHLMRLARAIASFSKQSISEENPILSATLPGGERVQIVIPPACE 80 (308)
T ss_pred CCCCCcEEEEEcCCCEEEEE-ECCcEEEecCccCCHHHHHHHHHHHHHHhCCcccCCCceEEEECCCCeEEEEECCCccc
Confidence 45789999999985 45544 344433333345899999999999987652 1233332 567888765543211
Q ss_pred EE--eEEEEECcccc---------ccc---------------c------------eeccccccCCEEEEEcCCCCcHHHH
Q 005344 192 VI--GLTCRVGRAVA---------GSA---------------E------------IICDLVEGGGSILVIGPPGVGKTTL 233 (701)
Q Consensus 192 I~--nLs~rygr~v~---------G~~---------------~------------~L~dlI~~GeiilIIGPNGSGKTTL 233 (701)
-. .+++|...... |.. . .|+-.+..|++++|+||+|||||||
T Consensus 81 ~~~~~i~IRk~~~~~~sl~~l~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 81 NDTVSITIRKPSLVDFSLDDYEEKGFFDTVRAQSGTLSDNDEQLLELLDAGDIKEFLRLAIASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred CCCceEEEECCCCCCCCHHHHHHcCCcccccccccccchhhHHHHHhhhhHHHHHHHHHHhhCCCEEEEECCCCCCHHHH
Confidence 11 33444322110 100 0 0111266799999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchh-hhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHH
Q 005344 234 IREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRA-RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALA 312 (701)
Q Consensus 234 LR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~-rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a 312 (701)
+++|++.++++. +++++++..|+.... +. .+... .............-.+..+|.++|++|++|||++. ++..
T Consensus 161 l~al~~~~~~~~--~iv~ied~~El~~~~--~~-~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~gE~r~~-e~~~ 234 (308)
T TIGR02788 161 LKSLVDEIPKDE--RIITIEDTREIFLPH--PN-YVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIILGELRGD-EAFD 234 (308)
T ss_pred HHHHHccCCccc--cEEEEcCccccCCCC--CC-EEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEEEeccCCH-HHHH
Confidence 999999998764 457787776664321 10 00000 00000111223345677889999999999999963 4433
Q ss_pred HHHHHhcCCE-EEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 313 ASTIAQRGVQ-LVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 313 ~~~l~e~Gvt-VIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
.......|.. ++.|+|+.+.... .+++..+..|.+
T Consensus 235 ~l~a~~~g~~~~i~T~Ha~~~~~~-~~Rl~~l~~~~~ 270 (308)
T TIGR02788 235 FIRAVNTGHPGSITTLHAGSPEEA-FEQLALMVKSSQ 270 (308)
T ss_pred HHHHHhcCCCeEEEEEeCCCHHHH-HHHHHHHhhccc
Confidence 3333457764 6999999996554 777777767665
No 375
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.61 E-value=2.2e-15 Score=150.02 Aligned_cols=126 Identities=13% Similarity=0.216 Sum_probs=87.6
Q ss_pred cccC-CEEEEEcCCCCcHHHHHHHHH--------hcCCCCCC-cEEEEEcCCcccccCCCCCCCCCch--hhhccCCChh
Q 005344 214 VEGG-GSILVIGPPGVGKTTLIREIA--------RMLADDHM-KRVVIVDTSNEIGGDGDVPHSGIGR--ARRMQVPNVN 281 (701)
Q Consensus 214 I~~G-eiilIIGPNGSGKTTLLR~Ia--------GlLsp~~G-krViiVd~~~EIa~~~~ip~~~ig~--~rr~~v~s~G 281 (701)
+..| ++++|+||||||||||||.|+ |...|... ..+.++++.-. ..+... ...+...+.|
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~--------~lg~~~~l~~~~s~fs~g 95 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFA--------DIGDEQSIEQSLSTFSSH 95 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEE--------ecCchhhhhcCcchHHHH
Confidence 5567 479999999999999999999 54444321 12222222110 111000 1122234569
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 282 MQHSVMIEAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 282 ~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
|+++..++++ +.+|+++++|||++++|+.....+ .+.|.++|++||+.. ...++++++.+.+|.+.
T Consensus 96 ~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~-l~~~~d~~~~l~~g~l~ 169 (200)
T cd03280 96 MKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGE-LKAYAYKREGVENASME 169 (200)
T ss_pred HHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHH-HHHHHhcCCCeEEEEEE
Confidence 9999988866 589999999999999999875332 446899999999854 55789999999988873
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.61 E-value=7.7e-15 Score=148.33 Aligned_cols=68 Identities=12% Similarity=0.013 Sum_probs=56.1
Q ss_pred CCChhHHHHHHHHHHHcc----CCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeC
Q 005344 277 VPNVNMQHSVMIEAVENH----MPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILV 345 (701)
Q Consensus 277 v~s~G~qQRV~IArAL~~----~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~ 345 (701)
..+.|++||++|+++++. .|+++++|||+++||+.....+ ...+.++|++||+. .+..+||+++.+..
T Consensus 127 ~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 127 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN-NMFELADRLVGIYK 204 (212)
T ss_pred hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH-HHHHhCCEEEEEEe
Confidence 357799999999999864 4799999999999999998655 23467899999995 45579999988864
No 377
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.60 E-value=7e-15 Score=149.38 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=55.4
Q ss_pred CChhHHHHHHHHHHHcc----CCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeC
Q 005344 278 PNVNMQHSVMIEAVENH----MPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILV 345 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~~----~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~ 345 (701)
.++||+||++||++++. .|+++|+|||+++||+.+...+ . ..+.++|+++|..+ +..+||+++.+..
T Consensus 159 lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d~i~~l~~ 235 (243)
T cd03272 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVADKFYGVKF 235 (243)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCCEEEEEEE
Confidence 57799999999999963 5899999999999999998554 2 23788888888865 5579999988763
No 378
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.60 E-value=1.4e-14 Score=176.80 Aligned_cols=160 Identities=16% Similarity=0.297 Sum_probs=124.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--ccc----
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--EIG---- 259 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--EIa---- 259 (701)
.|+++|++.||.. +...+|+++ |++||.+||+|++|||||||+.+|-|+..+..|+ +.||+-+ .++
T Consensus 1138 ~I~f~~~~~RYrp---~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~--I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRP---NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGE--ILIDGVDISKIGLHDL 1212 (1381)
T ss_pred eEEEEEeEEEeCC---CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCe--EEEcCeecccccHHHH
Confidence 5789999999984 456789999 9999999999999999999999999999999897 6777642 111
Q ss_pred --cCCCCCC----------CCCchh---------------------h----hc--cC------CChhHHHHHHHHHHHcc
Q 005344 260 --GDGDVPH----------SGIGRA---------------------R----RM--QV------PNVNMQHSVMIEAVENH 294 (701)
Q Consensus 260 --~~~~ip~----------~~ig~~---------------------r----r~--~v------~s~G~qQRV~IArAL~~ 294 (701)
...-+|| .+++.. . .+ .+ .|.||||.+++|||+..
T Consensus 1213 RsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr 1292 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR 1292 (1381)
T ss_pred HhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc
Confidence 0011111 011100 0 00 01 24599999999999999
Q ss_pred CCCEEEEcCCCCcccHHHH----HHHHh--cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAA----STIAQ--RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~----~~l~e--~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+.+|||+||.|++.|+.+- +++++ .++|||.++|..+.+. =+|++++|..|++ ++.+.+
T Consensus 1293 ~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVm-d~DrVlVld~G~v--~EfdsP 1357 (1381)
T KOG0054|consen 1293 KSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVM-DSDRVLVLDAGRV--VEFDSP 1357 (1381)
T ss_pred cCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhh-hcCeEEEeeCCeE--eecCCh
Confidence 9999999999999999875 44443 4899999999998773 5899999999999 777777
No 379
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.60 E-value=1.3e-15 Score=169.47 Aligned_cols=161 Identities=16% Similarity=0.210 Sum_probs=118.1
Q ss_pred hccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEcC
Q 005344 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVDT 254 (701)
Q Consensus 185 ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd~ 254 (701)
+-.+.+.+.|+++.|.. ...+++++ +..+.-++++|||||||||||+.+.|.+.|..|. ++..+.+
T Consensus 385 ~p~pvi~~~nv~F~y~~----~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Q 460 (614)
T KOG0927|consen 385 IPPPVIMVQNVSFGYSD----NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQ 460 (614)
T ss_pred CCCCeEEEeccccCCCC----cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhh
Confidence 34567788899998873 22566666 8888999999999999999999999999998874 1111122
Q ss_pred Cc--ccccC--------CCCCC-------------CCCc-h--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcc
Q 005344 255 SN--EIGGD--------GDVPH-------------SGIG-R--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTEL 308 (701)
Q Consensus 255 ~~--EIa~~--------~~ip~-------------~~ig-~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgL 308 (701)
.. +.... ..++. +++. . ...+...|.|+|.||++|+.+...|.+|||||||++|
T Consensus 461 h~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhL 540 (614)
T KOG0927|consen 461 HLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHL 540 (614)
T ss_pred hhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCC
Confidence 11 00000 00010 0111 0 0122335779999999999999999999999999999
Q ss_pred cHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 309 EALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 309 D~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
|......+ .+..-+||+++||.-++..+++.++...+|.+.
T Consensus 541 Di~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~ 585 (614)
T KOG0927|consen 541 DIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVT 585 (614)
T ss_pred CchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCcee
Confidence 99988655 344668999999999999999999999988873
No 380
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.59 E-value=1.6e-15 Score=140.22 Aligned_cols=91 Identities=21% Similarity=0.426 Sum_probs=65.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc-----------cccCCC----CCCC-----------
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-----------IGGDGD----VPHS----------- 267 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-----------Ia~~~~----ip~~----------- 267 (701)
+.+|++++|+|+||||||||+++|+|++.++.|. +.+++.+- ++.... .+..
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~--i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~ 85 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGS--ILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERI 85 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHESEEE--EEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHH
T ss_pred EcCCCEEEEEccCCCccccceeeecccccccccc--cccccccccccccccccccccccccccccccccccccccccccc
Confidence 6689999999999999999999999999998876 56664311 000000 0000
Q ss_pred -------CCch--hhhc----cCCChhHHHHHHHHHHHccCCCEEEEcCCCC
Q 005344 268 -------GIGR--ARRM----QVPNVNMQHSVMIEAVENHMPETIIIDEIGT 306 (701)
Q Consensus 268 -------~ig~--~rr~----~v~s~G~qQRV~IArAL~~~PdVIILDEPts 306 (701)
++.. ...+ ...+.|+|||++||+++..+|++||+||||+
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 86 EEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 0000 0112 4467899999999999999999999999985
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.59 E-value=7.8e-15 Score=147.24 Aligned_cols=131 Identities=14% Similarity=0.112 Sum_probs=88.5
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHH----hcCCCCCCc---------------EEEEEcCCcc---ccc------CCCC-
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIA----RMLADDHMK---------------RVVIVDTSNE---IGG------DGDV- 264 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~Ia----GlLsp~~Gk---------------rViiVd~~~E---Ia~------~~~i- 264 (701)
+.+| +++|+|||||||||||++|. |...++.+. .|.++.+... +.. ...+
T Consensus 20 ~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~ 98 (204)
T cd03240 20 FFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVI 98 (204)
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhcee
Confidence 4555 99999999999999999995 777665441 2333332220 000 0000
Q ss_pred --CCCCCch--hhhccCCChhHHHH------HHHHHHHccCCCEEEEcCCCCcccHHHHH-HH-------Hhc-CCEEEE
Q 005344 265 --PHSGIGR--ARRMQVPNVNMQHS------VMIEAVENHMPETIIIDEIGTELEALAAS-TI-------AQR-GVQLVG 325 (701)
Q Consensus 265 --p~~~ig~--~rr~~v~s~G~qQR------V~IArAL~~~PdVIILDEPtsgLD~~a~~-~l-------~e~-GvtVIi 325 (701)
+...+.. .....-.+.|++|+ ++++++++.+|++||+|||+++||+..+. .+ .+. |.++|+
T Consensus 99 ~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iii 178 (204)
T cd03240 99 FCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIV 178 (204)
T ss_pred eechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEE
Confidence 0000000 01223457799996 67889999999999999999999998876 44 233 789999
Q ss_pred EEcChhHHHHhcCcEEEEeCC
Q 005344 326 TAHGMTIDNIVKNPSLQILVG 346 (701)
Q Consensus 326 TTHd~~l~~~l~drvlvl~~G 346 (701)
+||+.++.. .+|+++.+...
T Consensus 179 itH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 179 ITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred EEecHHHHh-hCCEEEEEeeC
Confidence 999998875 69999887644
No 382
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5.7e-15 Score=160.58 Aligned_cols=168 Identities=18% Similarity=0.273 Sum_probs=123.8
Q ss_pred hhccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEc
Q 005344 184 AIRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVD 253 (701)
Q Consensus 184 ~ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd 253 (701)
.+.-+.+-+.++++.|. |...++..+ |.-..-++|+||||+||||||+.|.|-+.|..|. +|++++
T Consensus 581 ~L~PPvLGlH~VtFgy~----gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~Fd 656 (807)
T KOG0066|consen 581 KLNPPVLGLHDVTFGYP----GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFD 656 (807)
T ss_pred CCCCCeeecccccccCC----CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechh
Confidence 35556777889999996 355666666 6667789999999999999999999999998773 588888
Q ss_pred CCcccc--c----------CCCCCCC----CCch------hh--hccCCChhHHHHHHHHHHHccCCCEEEEcCCCCccc
Q 005344 254 TSNEIG--G----------DGDVPHS----GIGR------AR--RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELE 309 (701)
Q Consensus 254 ~~~EIa--~----------~~~ip~~----~ig~------~r--r~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD 309 (701)
+...-+ + ...+|+. .+|. +. .+.-+++|++.||++|-.-+..||||||||||++||
T Consensus 657 Qh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLD 736 (807)
T KOG0066|consen 657 QHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD 736 (807)
T ss_pred hhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcc
Confidence 752110 0 0122221 1111 11 222357899999999988889999999999999999
Q ss_pred HHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 310 ALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 310 ~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+.+...+ .+..-.||+++||..++.......+++.+.+|..+ .|+-
T Consensus 737 IESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eI-dGdF 786 (807)
T KOG0066|consen 737 IESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQGIDEI-DGDF 786 (807)
T ss_pred hhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccCChhhc-cccH
Confidence 9988554 55677899999999888777777788877776544 3443
No 383
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.7e-14 Score=157.07 Aligned_cols=163 Identities=20% Similarity=0.297 Sum_probs=124.0
Q ss_pred hccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccc---
Q 005344 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEI--- 258 (701)
Q Consensus 185 ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EI--- 258 (701)
.+...+.+.++++.|.. .+.+|.++ +..|+.++|+|++|+||||++|.|-+.+.+.+|. +.+|+..--
T Consensus 258 ~~~g~v~F~~V~F~y~~----~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~--I~id~qdir~vt 331 (497)
T COG5265 258 VRLGAVAFINVSFAYDP----RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS--ITIDGQDIRDVT 331 (497)
T ss_pred cccceEEEEEEEeeccc----cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce--EEEcchhHHHhH
Confidence 34445678899999973 46788888 8999999999999999999999999999999997 666665210
Q ss_pred -----ccCCCCCCC-----------------C-----C------------------ch----hhhccCCChhHHHHHHHH
Q 005344 259 -----GGDGDVPHS-----------------G-----I------------------GR----ARRMQVPNVNMQHSVMIE 289 (701)
Q Consensus 259 -----a~~~~ip~~-----------------~-----i------------------g~----~rr~~v~s~G~qQRV~IA 289 (701)
...+-+|+- . + |. ..+--..++|+||||+||
T Consensus 332 q~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaia 411 (497)
T COG5265 332 QQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIA 411 (497)
T ss_pred HHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHH
Confidence 000111210 0 0 00 001112477999999999
Q ss_pred HHHccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 290 AVENHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 290 rAL~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++..+|.++++||.|++||...-+++ ...|.|-++++|-++.+ .-+|.++++.+|+| ++.|.-
T Consensus 412 r~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti-~~adeiivl~~g~i--~erg~h 481 (497)
T COG5265 412 RTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTI-IDADEIIVLDNGRI--VERGTH 481 (497)
T ss_pred HHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhc-cCCceEEEeeCCEE--EecCcH
Confidence 999999999999999999999887655 45799999999998876 45899999999999 655554
No 384
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.58 E-value=8.4e-15 Score=160.47 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=99.9
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc----EEEEEcCCcccccCCCC----------------CC------C
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----RVVIVDTSNEIGGDGDV----------------PH------S 267 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----rViiVd~~~EIa~~~~i----------------p~------~ 267 (701)
+..||+++++||||-|||||++.|||.+.|+.|. +|.+=+|.-.-...+.+ .+ +
T Consensus 364 i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl 443 (591)
T COG1245 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPL 443 (591)
T ss_pred eecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCcc
Confidence 7889999999999999999999999999999883 34433332110000000 00 0
Q ss_pred CCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHH--------HHhcCCEEEEEEcChhHHHHhc
Q 005344 268 GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST--------IAQRGVQLVGTAHGMTIDNIVK 337 (701)
Q Consensus 268 ~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~--------l~e~GvtVIiTTHd~~l~~~l~ 337 (701)
.+.. .+..+-+|+|+.|||+||++|..+.|+.++|||.+.||.+.+.. +.+.+.+.+++-||.-+++.++
T Consensus 444 ~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvs 523 (591)
T COG1245 444 NLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVS 523 (591)
T ss_pred chHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhh
Confidence 1111 12344568899999999999999999999999999999988722 2567899999999999999999
Q ss_pred CcEEEEe
Q 005344 338 NPSLQIL 344 (701)
Q Consensus 338 drvlvl~ 344 (701)
|+++++.
T Consensus 524 Dr~ivF~ 530 (591)
T COG1245 524 DRLIVFE 530 (591)
T ss_pred ceEEEEe
Confidence 9999885
No 385
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.54 E-value=6.9e-14 Score=170.81 Aligned_cols=165 Identities=17% Similarity=0.223 Sum_probs=125.3
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----EEEEEcCCccc
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-----RVVIVDTSNEI 258 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-----rViiVd~~~EI 258 (701)
+..+++.+.++.++.. +....|+|+ +++|+.++|+|+.|||||+||.+|.|.+...+|. .+.|+.|..=|
T Consensus 516 ~~~i~i~~~sfsW~~~--~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI 593 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE--SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWI 593 (1381)
T ss_pred CceEEEeeeeEecCCC--CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHh
Confidence 4467899999998852 344478888 8999999999999999999999999999988874 35666665311
Q ss_pred c------------------------cCC------CCCCC---CCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCC
Q 005344 259 G------------------------GDG------DVPHS---GIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305 (701)
Q Consensus 259 a------------------------~~~------~ip~~---~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPt 305 (701)
. .|. .+|.- .+|. +=-..|+|||||+.+|||+-.+.|+.++|.|.
T Consensus 594 ~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE--rGinLSGGQKqRIsLARAVY~~adIYLLDDpl 671 (1381)
T KOG0054|consen 594 QNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGE--RGINLSGGQKQRISLARAVYQDADIYLLDDPL 671 (1381)
T ss_pred hCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecC--CccCCcHhHHHHHHHHHHHhccCCEEEEcCcc
Confidence 1 010 00110 0111 11125789999999999999999999999999
Q ss_pred CcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 306 TELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 306 sgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
+++|+...+.+ .-+++|+|++||..... ..+|.+++|.+|+| +..|+-++
T Consensus 672 SAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L-~~ad~Iivl~~G~I--~~~Gty~e 728 (1381)
T KOG0054|consen 672 SAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFL-PHADQIIVLKDGKI--VESGTYEE 728 (1381)
T ss_pred hhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhh-hhCCEEEEecCCeE--ecccCHHH
Confidence 99999988655 34589999999977665 57999999999999 55666543
No 386
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=99.54 E-value=1.3e-13 Score=148.13 Aligned_cols=224 Identities=19% Similarity=0.239 Sum_probs=143.9
Q ss_pred HHHHHHHcHHHHHHHHhhccCCCCeEEEEEeC-CCceEEecCCCceeeccccCCHHHHHHHHHHHhcccc----cCCCcc
Q 005344 101 LELFLELLPSRMRRELCMHRELGDLIEVVMDL-GRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSD----DNRSGI 175 (701)
Q Consensus 101 l~~ll~~LP~~ir~~l~~~~~~~~l~EI~L~~-GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs~----d~R~Gi 175 (701)
.++..+.|-..++..|..+.++++++||.+|. +..|+.+.+.+.... ..++.++++.++..++.+.. +.++.+
T Consensus 7 ~~~~~~~~~~~l~~~l~~~l~D~~V~eI~iN~~~~v~v~~~g~~~~~~--~~l~~~~~~~~i~~lA~~~~~~~~~~~P~l 84 (323)
T PRK13833 7 HPRLVRKLQDALGDQLCVALDDATVVEIMLNPDGKLFIERLGHGVAPA--GEMSAAAAEVVIGSVAHALQSEADDERPII 84 (323)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCcEEEEECCCCEEEEEECCceEEec--CcCCHHHHHHHHHHHHHHhCCccCCCCceE
Confidence 34455555566666677788889999999997 677777765443332 34899999999999987652 234443
Q ss_pred c---c-ccchhhhhccceEEEEeEEEEECccc---------cc-----ccceeccccccCCEEEEEcCCCCcHHHHHHHH
Q 005344 176 D---R-SLHRISAIRNRKMQVIGLTCRVGRAV---------AG-----SAEIICDLVEGGGSILVIGPPGVGKTTLIREI 237 (701)
Q Consensus 176 ~---r-tghRIs~ir~~~IeI~nLs~rygr~v---------~G-----~~~~L~dlI~~GeiilIIGPNGSGKTTLLR~I 237 (701)
. + +++|+.++..+...=..+++|-.... .| ....|..++..+.+++|.|++||||||||+.|
T Consensus 85 ~~~Lp~~g~Ri~~~~pp~~~~~~~~IRk~~~~~~tl~~lv~~g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL 164 (323)
T PRK13833 85 SGELPIGGHRFEGLLPPVVSGPAFTIRRRASRLIPLDDYVTSKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAV 164 (323)
T ss_pred EEEeCCCCEEEEEEcCCCCCCceEEEECcCCCCCCHHHHHHcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHH
Confidence 2 3 67899864433211123444432110 01 11223333667789999999999999999999
Q ss_pred HhcCCC-CCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH
Q 005344 238 ARMLAD-DHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI 316 (701)
Q Consensus 238 aGlLsp-~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l 316 (701)
++.+.. ..+.+++.+++..|+... +...- .+.. ..+....-++..+|.++||+|+++|.... ++...-.+
T Consensus 165 ~~~i~~~~~~~rivtiEd~~El~~~----~~n~v---~l~~-~~~~~~~~lv~~aLR~~PD~IivGEiRg~-ea~~~l~a 235 (323)
T PRK13833 165 IAEIVASAPEDRLVILEDTAEIQCA----AENAV---ALHT-SDTVDMARLLKSTMRLRPDRIIVGEVRDG-AALTLLKA 235 (323)
T ss_pred HHHHhcCCCCceEEEecCCcccccC----CCCEE---Eecc-CCCcCHHHHHHHHhCCCCCEEEEeecCCH-HHHHHHHH
Confidence 998741 124688999988887531 11110 1111 11233456677899999999999999955 45444455
Q ss_pred HhcCCE-EEEEEcChhHHHH
Q 005344 317 AQRGVQ-LVGTAHGMTIDNI 335 (701)
Q Consensus 317 ~e~Gvt-VIiTTHd~~l~~~ 335 (701)
.+.|.. .+.|.|..+..+.
T Consensus 236 ~~tGh~G~itTiHA~s~~~a 255 (323)
T PRK13833 236 WNTGHPGGVTTIHSNTAMSA 255 (323)
T ss_pred HcCCCCceEEEECCCCHHHH
Confidence 677875 7888898765543
No 387
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=99.53 E-value=1.5e-13 Score=147.36 Aligned_cols=223 Identities=19% Similarity=0.244 Sum_probs=144.0
Q ss_pred HHHHHHcHHHHHHHHhhccCCCCeEEEEEeC-CCceEEecCCCceeeccccCCHHHHHHHHHHHhcccc----cCCCccc
Q 005344 102 ELFLELLPSRMRRELCMHRELGDLIEVVMDL-GRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSD----DNRSGID 176 (701)
Q Consensus 102 ~~ll~~LP~~ir~~l~~~~~~~~l~EI~L~~-GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs~----d~R~Gi~ 176 (701)
++..+.|-..++..|..+.+++.++||++|. |+.|+.+.+...... ..++.++++.+++.++.++. ...+.+.
T Consensus 12 ~~~~~~~~~~~~~~l~~~l~Dp~v~EI~iN~~~~V~v~~~g~~~~~~--~~~~~~~~~~~~~~lA~~~g~~~~~~~P~l~ 89 (319)
T PRK13894 12 ERAKKKLERDMGPELLAALNDPKTVEIMLNADGKLWQERLGEPMRCI--GTLRVAQAQAIIETIAGYHGKEVTRSKPILE 89 (319)
T ss_pred HHHHHHHHHHHhHHHHHHhcCCCceEEEEcCCCEEEEEECCcEEecC--CCCCHHHHHHHHHHHHHHcCCcccCCCceEE
Confidence 4566666677776678888899999999997 888888866543322 24889999999999987763 2334432
Q ss_pred ---c-ccchhhhhccceEEEEeEEEEECccc---------ccc-----cceeccccccCCEEEEEcCCCCcHHHHHHHHH
Q 005344 177 ---R-SLHRISAIRNRKMQVIGLTCRVGRAV---------AGS-----AEIICDLVEGGGSILVIGPPGVGKTTLIREIA 238 (701)
Q Consensus 177 ---r-tghRIs~ir~~~IeI~nLs~rygr~v---------~G~-----~~~L~dlI~~GeiilIIGPNGSGKTTLLR~Ia 238 (701)
+ .|+|+.+.-.+...=..+++|..+.. .|. ...|...+..+.+++|.|++|||||||++.|+
T Consensus 90 ~~lp~~G~Rv~~~~~p~~~g~~~~IRk~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~ 169 (319)
T PRK13894 90 GELPLDGSRFAGQLPPVVPAPTFAIRKKAVAIFTLDQYVERGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAII 169 (319)
T ss_pred EEcCCCCEEEEEEcCCcCCCcEEEEECCCCCCCCHHHHHhcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHH
Confidence 3 56888754332211112444432211 011 12233336788999999999999999999999
Q ss_pred hcCC-CCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHH
Q 005344 239 RMLA-DDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIA 317 (701)
Q Consensus 239 GlLs-p~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~ 317 (701)
+.+. .....+++++++..|+... +.+.-. +. ...+....-++..+|.++||+||++|.... ++...-...
T Consensus 170 ~~~~~~~~~~rivtIEd~~El~~~----~~~~v~---~~-~~~~~~~~~ll~~aLR~~PD~IivGEiR~~-Ea~~~l~A~ 240 (319)
T PRK13894 170 NEMVIQDPTERVFIIEDTGEIQCA----AENYVQ---YH-TSIDVNMTALLKTTLRMRPDRILVGEVRGP-EALDLLMAW 240 (319)
T ss_pred HhhhhcCCCceEEEEcCCCccccC----CCCEEE---Ee-cCCCCCHHHHHHHHhcCCCCEEEEeccCCH-HHHHHHHHH
Confidence 8752 1224678999998887532 111100 00 011122345678899999999999999965 444444556
Q ss_pred hcCCE-EEEEEcChhHHHH
Q 005344 318 QRGVQ-LVGTAHGMTIDNI 335 (701)
Q Consensus 318 e~Gvt-VIiTTHd~~l~~~ 335 (701)
+.|.. .+.|.|..+....
T Consensus 241 ~tGh~G~~tTiHa~s~~~a 259 (319)
T PRK13894 241 NTGHEGGAATLHANNAKAG 259 (319)
T ss_pred HcCCCceEEEECCCCHHHH
Confidence 77874 7888887765543
No 388
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.52 E-value=1.1e-13 Score=142.43 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=54.8
Q ss_pred CChhHHHHHHHHHHHc----cCCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEe
Q 005344 278 PNVNMQHSVMIEAVEN----HMPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQIL 344 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~----~~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~ 344 (701)
.+.|++|+++||++++ ..|+++|+|||+++||+.....+ . ..|.++|++||..+..+ .||+++.+.
T Consensus 167 lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~-~~d~v~~~~ 242 (251)
T cd03273 167 LSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFN-NANVLFRTR 242 (251)
T ss_pred cCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEE
Confidence 4679999999999997 47899999999999999988554 1 25899999999965554 699987654
No 389
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.52 E-value=1.2e-14 Score=146.79 Aligned_cols=185 Identities=16% Similarity=0.235 Sum_probs=131.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCC--------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDH-------------------- 245 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~-------------------- 245 (701)
.+.|.||++.+.. ..|-..+++.+ +.+||+-+++|.+|||||-..+.|+|..+..-
T Consensus 3 LLDIrnL~IE~~T-sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 3 LLDIRNLTIEFKT-SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred cccccceEEEEec-CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 3567888888863 24556778877 89999999999999999999999999987531
Q ss_pred ------CcEEEEEcCCcc--------ccc--CCCCCCC----------CCch------hhhccC-------------CCh
Q 005344 246 ------MKRVVIVDTSNE--------IGG--DGDVPHS----------GIGR------ARRMQV-------------PNV 280 (701)
Q Consensus 246 ------GkrViiVd~~~E--------Ia~--~~~ip~~----------~ig~------~rr~~v-------------~s~ 280 (701)
|+.|.++++... ++. ...+|.. ++.. ..+.++ ...
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe 161 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE 161 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence 122333333211 100 0111211 1100 011111 123
Q ss_pred hHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEe
Q 005344 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVT 352 (701)
Q Consensus 281 G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~ 352 (701)
|+-|+||||.|++..|.+||.||||+.+|+..+..+ .+.|.++++++||+..+..+||++-++..|.- ++
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~--~E 239 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQT--VE 239 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccc--cc
Confidence 888999999999999999999999999999887544 35699999999999999999999999999964 44
Q ss_pred cCcHHHHhhhhHHHHhhccCCCcceeeeeeee
Q 005344 353 LGDEEAKKRKVQKTILERKGPPTFTCAVEMIS 384 (701)
Q Consensus 353 lgd~~a~~r~~qe~Iler~~~p~f~~~vev~~ 384 (701)
.+.. +.+++.+.+|+.+.++...+
T Consensus 240 Sa~~--------e~l~~~PhHPYTqALi~a~P 263 (330)
T COG4170 240 SAPS--------EELVTMPHHPYTQALIRAIP 263 (330)
T ss_pred ccch--------hHHhcCCCCchHHHHHHhCc
Confidence 4333 45677888888877766553
No 390
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.51 E-value=1e-13 Score=142.56 Aligned_cols=67 Identities=7% Similarity=0.050 Sum_probs=56.5
Q ss_pred CChhHHHHHHHHHHHccC----CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeC
Q 005344 278 PNVNMQHSVMIEAVENHM----PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILV 345 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~~~----PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~ 345 (701)
.+.|++|+++|+++++.+ |+++|+|||+++||+.....+ ++.|.++|++||+.++. .+||+++.+..
T Consensus 156 LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~~~ 233 (247)
T cd03275 156 LSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALVGVYR 233 (247)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEEEEEe
Confidence 467999999999999875 899999999999999877543 33489999999998776 57999887763
No 391
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=99.50 E-value=2.2e-13 Score=144.75 Aligned_cols=209 Identities=21% Similarity=0.293 Sum_probs=133.5
Q ss_pred HHhhccCCCCeEEEEEeC-CCceEEecCCCceeeccccCCHHHHHHHHHHHhccccc----CCCccc---c-ccchhhhh
Q 005344 115 ELCMHRELGDLIEVVMDL-GRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDD----NRSGID---R-SLHRISAI 185 (701)
Q Consensus 115 ~l~~~~~~~~l~EI~L~~-GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs~d----~R~Gi~---r-tghRIs~i 185 (701)
.|..+.+++++.||.+|. +..|+.+.+.+.. ... .++.+++..+++.++.++.. .++.+. + +++|+...
T Consensus 9 ~l~~~l~d~~v~eI~in~~~~v~v~~~g~~~~-~~~-~~s~~~~~~l~~~la~~~g~~~~~~~P~~~~~lp~~g~R~~~~ 86 (299)
T TIGR02782 9 EIAAALDDPGVVEIMLNPDGRLWVERLGSGMS-PLG-EMSPADAQRIIGLVADYLGTEVDRDKPIVEGELPLDGSRFEGL 86 (299)
T ss_pred HHHHHhcCCCceEEEEcCCCeEEEEECCceEE-ecC-CCCHHHHHHHHHHHHHHhCCeecCCCCEEEEEECCCCEEEEEE
Confidence 355566788999999998 6677777654433 222 28999999999999876632 233332 2 56788743
Q ss_pred ccceEEEEeEEEEECcccc---------cc-----cceeccccccCCEEEEEcCCCCcHHHHHHHHHhcCCC-CCCcEEE
Q 005344 186 RNRKMQVIGLTCRVGRAVA---------GS-----AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLAD-DHMKRVV 250 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v~---------G~-----~~~L~dlI~~GeiilIIGPNGSGKTTLLR~IaGlLsp-~~GkrVi 250 (701)
..+...=..+++|...... |. ...|..++..+.+++|.|++|||||||+++|++.+.. ..+.+++
T Consensus 87 ~~p~~~g~~i~IRk~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~ 166 (299)
T TIGR02782 87 IPPVVAAPSFAIRKKAVAVFTLDDYVEAGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVV 166 (299)
T ss_pred ecCccCCcEEEEECcCCCCCCHHHHHhcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEE
Confidence 3322111234444321110 10 1123333667789999999999999999999999865 2357899
Q ss_pred EEcCCcccccCCCCCCCCCchhhhccCC-ChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCE-EEEEEc
Q 005344 251 IVDTSNEIGGDGDVPHSGIGRARRMQVP-NVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQ-LVGTAH 328 (701)
Q Consensus 251 iVd~~~EIa~~~~ip~~~ig~~rr~~v~-s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~Gvt-VIiTTH 328 (701)
++++..|+... +.+.- .+... ..+ -..-++..+|.++||+|+++|+... ++...-...+.|.. ++.|.|
T Consensus 167 tiEd~~El~~~----~~~~v---~~~~~~~~~-~~~~~l~~aLR~~pD~iivGEiR~~-ea~~~l~a~~tGh~G~~tTiH 237 (299)
T TIGR02782 167 IIEDTRELQCA----APNVV---QLRTSDDAI-SMTRLLKATLRLRPDRIIVGEVRGG-EALDLLKAWNTGHPGGIATIH 237 (299)
T ss_pred EECCchhhcCC----CCCEE---EEEecCCCC-CHHHHHHHHhcCCCCEEEEeccCCH-HHHHHHHHHHcCCCCeEEeec
Confidence 99998887532 11110 01111 111 2345678899999999999999954 44444455678876 788889
Q ss_pred ChhHHH
Q 005344 329 GMTIDN 334 (701)
Q Consensus 329 d~~l~~ 334 (701)
..+..+
T Consensus 238 a~~~~~ 243 (299)
T TIGR02782 238 ANNAKA 243 (299)
T ss_pred cCCHHH
Confidence 776544
No 392
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.50 E-value=7.1e-14 Score=139.33 Aligned_cols=136 Identities=16% Similarity=0.136 Sum_probs=84.0
Q ss_pred eeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcC-CCCCCcEEEEEcC-CcccccCC-CCCCCCCchhhhccC--CChhH
Q 005344 209 IICDL-VEGGGSILVIGPPGVGKTTLIREIARML-ADDHMKRVVIVDT-SNEIGGDG-DVPHSGIGRARRMQV--PNVNM 282 (701)
Q Consensus 209 ~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlL-sp~~GkrViiVd~-~~EIa~~~-~ip~~~ig~~rr~~v--~s~G~ 282 (701)
+..++ +..|+.++|+|||||||||||++|++.. -...|. ++.. ...+.... .+.+..........+ ...++
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~---~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~ 96 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGC---FVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAEL 96 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCC---CccccccccCCcCEEEEEecCcccccCCceeHHHHH
Confidence 34566 7788999999999999999999999432 222232 1111 11121110 001111110000111 12244
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 283 QHSVMIEAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 283 qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+ ++..+..+..+|+++|+|||++++|+.....+ .+.|.++|++||+.++.. .++++..+..+.+.
T Consensus 97 ~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~ 169 (202)
T cd03243 97 L-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELAD-LPEQVPGVKNLHME 169 (202)
T ss_pred H-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHH-HhhcCCCeEEEEEE
Confidence 4 46666677889999999999999999765322 456899999999988776 55566666677663
No 393
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.50 E-value=1e-13 Score=139.75 Aligned_cols=160 Identities=24% Similarity=0.283 Sum_probs=118.9
Q ss_pred hhccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc---
Q 005344 184 AIRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE--- 257 (701)
Q Consensus 184 ~ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E--- 257 (701)
+.++-.|++.|+.+.|.. ..+++-|+ +..|.-.+++|.||+||||||++|+|---...|. +.|.+..-
T Consensus 8 ~~~~~aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~--v~VlgrsaFhD 81 (291)
T KOG2355|consen 8 AVSDFAIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGV--VQVLGRSAFHD 81 (291)
T ss_pred hcccceEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCe--EEEcCcCcccc
Confidence 456778899999999973 44677776 8899999999999999999999999964333232 33322210
Q ss_pred --------ccc-----------CCCCCCC-CC--------------------------chhhhccCCChhHHHHHHHHHH
Q 005344 258 --------IGG-----------DGDVPHS-GI--------------------------GRARRMQVPNVNMQHSVMIEAV 291 (701)
Q Consensus 258 --------Ia~-----------~~~ip~~-~i--------------------------g~~rr~~v~s~G~qQRV~IArA 291 (701)
..+ .+.+|-. ++ ...-+|.-.+.|+++||.|++-
T Consensus 82 t~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMG 161 (291)
T KOG2355|consen 82 TSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMG 161 (291)
T ss_pred ccccccCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHh
Confidence 000 0111210 01 1111222346699999999999
Q ss_pred HccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 292 ENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 292 L~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
|.+.=+||++||.|-.||+.++..+ .++|.||++.||-.+-.+.+.++++.+..|++.
T Consensus 162 LL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~ 227 (291)
T KOG2355|consen 162 LLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLV 227 (291)
T ss_pred cccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeee
Confidence 9999999999999999999998543 567999999999999999999999999999983
No 394
>PRK13764 ATPase; Provisional
Probab=99.48 E-value=9e-13 Score=151.28 Aligned_cols=216 Identities=21% Similarity=0.302 Sum_probs=142.8
Q ss_pred CCeEEEEEeCCCceEEecCC-Cce---eeccccCCHHHHHHHHHHHhccccc--------CCCcc---ccccchhhhhcc
Q 005344 123 GDLIEVVMDLGRKPLARFPS-GDW---VISEQIVKHEDLKHAISKVGDFSDD--------NRSGI---DRSLHRISAIRN 187 (701)
Q Consensus 123 ~~l~EI~L~~GR~p~~r~~~-~~~---~l~~~~vt~edl~~~i~~I~~fs~d--------~R~Gi---~rtghRIs~ir~ 187 (701)
++.-.|+|..|.||.++.+. |.+ .+.+.+++.++++.+++.+.++... ..++. ..+++|+...+.
T Consensus 142 ~~asdvhL~~g~pp~~r~~~~G~~~l~~i~~~~lt~~~l~~la~~i~~~~~~~~~~~~e~~~p~~~~~~~~~~Rv~i~~~ 221 (602)
T PRK13764 142 EETMSVHLKEGVPPMAKKGKPGEWKLVKIRDEPLTEEELEEIAREILERAKRDPDGFIEIERRGATVVQLGNYRIVIARP 221 (602)
T ss_pred CCceeEEEcCCCCcEEEEecCCceEEEECCCCCCCHHHHHHHHHHHHHHhcccccccceeecCcccccCCCCEEEEEEcc
Confidence 56788999999999999863 322 3555689999999999999654321 11221 124578776555
Q ss_pred ceEEEEeEEEEECccc-------ccccc-eeccccccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccc
Q 005344 188 RKMQVIGLTCRVGRAV-------AGSAE-IICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIG 259 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v-------~G~~~-~L~dlI~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa 259 (701)
+.. .+++++.-+.. .+... ++..+...+++++|.||+|||||||+++|+..+. ..++.|..+++..|+.
T Consensus 222 p~~--~~~~itirrp~~~~~Le~l~l~~~l~~~l~~~~~~ILIsG~TGSGKTTll~AL~~~i~-~~~riV~TiEDp~El~ 298 (602)
T PRK13764 222 PFS--DGIEITAVRPVVKLSLEDYNLSEKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYA-DMGKIVKTMESPRDLQ 298 (602)
T ss_pred Ccc--ccEEEEEEccCCCCCHHHhCCCHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHh-hCCCEEEEECCCcccc
Confidence 432 23333321111 01111 1122245678899999999999999999999986 4567777888887875
Q ss_pred cCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEc-----------
Q 005344 260 GDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAH----------- 328 (701)
Q Consensus 260 ~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTH----------- 328 (701)
....+.+. ......+ ......+|.++||+|++||+....+......++..|..++.|.|
T Consensus 299 ~~~~i~q~--------~~~~~~~--~~~~~~lLR~rPD~IivGEiRd~Et~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl 368 (602)
T PRK13764 299 VPPEITQY--------SKLEGSM--EETADILLLVRPDYTIYDEMRKTEDFKIFADMRLAGVGMVGVVHATRPIDAIQRF 368 (602)
T ss_pred CCCcceEE--------eeccccH--HHHHHHHHhhCCCEEEECCCCCHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHH
Confidence 32211111 0111111 12223457899999999999987777776677778999999999
Q ss_pred ----ChhHHHHhcCcEEEEeCCeEEEE
Q 005344 329 ----GMTIDNIVKNPSLQILVGGIESV 351 (701)
Q Consensus 329 ----d~~l~~~l~drvlvl~~G~I~~V 351 (701)
++..+..++|.++.+.+|++..+
T Consensus 369 ~~~v~lg~i~~iID~IV~I~~G~I~~v 395 (602)
T PRK13764 369 IGRVELGMIPQIVDTVIFIEDGEVSKV 395 (602)
T ss_pred HhhhhhchHHHhhcEEEEEeCCEEEEE
Confidence 55666678888888888888544
No 395
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=99.47 E-value=7e-13 Score=142.96 Aligned_cols=214 Identities=18% Similarity=0.170 Sum_probs=132.2
Q ss_pred HHhhccCCCCeEEEEEeC-CCceEEecCCCceeeccccCCHHHHHHHHHHHhcccc----cCCCccc---cccchhhhhc
Q 005344 115 ELCMHRELGDLIEVVMDL-GRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSD----DNRSGID---RSLHRISAIR 186 (701)
Q Consensus 115 ~l~~~~~~~~l~EI~L~~-GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs~----d~R~Gi~---rtghRIs~ir 186 (701)
.|..+.++++++||.+|. +..|+.+ .++........++.++++.++..++.+.. ...+.+. ++|+|+....
T Consensus 14 ~l~~ll~d~~vtEI~iN~~~~v~v~~-~G~~~~~~~~~~~~~~~~~l~~~ia~~~~~~i~~~~P~l~~~Lp~G~Rv~~~~ 92 (332)
T PRK13900 14 PLKNIFAEDGVNEISINKPGEVWVEK-KGDIRCEQIPELDLSHLKALGRLVAQATEQKISEEKPLLSATLPNGYRIQIVF 92 (332)
T ss_pred hHHHHhcCCCCEEEEECCCCEEEEEE-CCcEEEecCCCCCHHHHHHHHHHHHHHcCCcccCCCceEEEEcCCCeEEEEEc
Confidence 466677789999999998 5555544 33333333345899999999999987652 1233332 5678887554
Q ss_pred cceEEE--EeEEEEECccc---------cccc--------------------------ceeccccccCCEEEEEcCCCCc
Q 005344 187 NRKMQV--IGLTCRVGRAV---------AGSA--------------------------EIICDLVEGGGSILVIGPPGVG 229 (701)
Q Consensus 187 ~~~IeI--~nLs~rygr~v---------~G~~--------------------------~~L~dlI~~GeiilIIGPNGSG 229 (701)
.+...- ..+++|-.... .|.. ..|...+..+.+++|.|++|||
T Consensus 93 ~p~~~~~~~~~~IRk~~~~~~sl~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~~v~~~~nili~G~tgSG 172 (332)
T PRK13900 93 PPACEIGQIVYSIRKPSGMQLTLDDYEKMGAFDETATESLVDEDDVILNELLAEKKIKEFLEHAVISKKNIIISGGTSTG 172 (332)
T ss_pred CCcccCCCceEEEECCCCCCCCHHHHHhcCCCCcccccccccchhhhhhhhhhhHHHHHHHHHHHHcCCcEEEECCCCCC
Confidence 332111 12333322110 0100 1122225678899999999999
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCC-CCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcc
Q 005344 230 KTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHS-GIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTEL 308 (701)
Q Consensus 230 KTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~-~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgL 308 (701)
|||||++|+..+++. .+|+++++..|+.... .+.. .+- ..............-.+..+|.++||+||++|....
T Consensus 173 KTTll~aL~~~ip~~--~ri~tiEd~~El~l~~-~~n~~~~~-~~~~~~~~~~~~~~~ll~~~LR~~PD~IivGEiR~~- 247 (332)
T PRK13900 173 KTTFTNAALREIPAI--ERLITVEDAREIVLSN-HPNRVHLL-ASKGGQGRAKVTTQDLIEACLRLRPDRIIVGELRGA- 247 (332)
T ss_pred HHHHHHHHHhhCCCC--CeEEEecCCCcccccc-CCCEEEEE-ecCCCCCcCcCcHHHHHHHHhccCCCeEEEEecCCH-
Confidence 999999999999764 7889999888875311 0110 000 000001111222345677899999999999999954
Q ss_pred cHHHHHHHHhcCCE-EEEEEcChhHHH
Q 005344 309 EALAASTIAQRGVQ-LVGTAHGMTIDN 334 (701)
Q Consensus 309 D~~a~~~l~e~Gvt-VIiTTHd~~l~~ 334 (701)
++...-...+.|.. ++.|.|..+..+
T Consensus 248 ea~~~l~a~~tGh~G~~tTiHa~s~~~ 274 (332)
T PRK13900 248 EAFSFLRAINTGHPGSISTLHADSPAM 274 (332)
T ss_pred HHHHHHHHHHcCCCcEEEEEecCCHHH
Confidence 45555555778875 888889776543
No 396
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.46 E-value=4e-13 Score=145.48 Aligned_cols=181 Identities=12% Similarity=0.195 Sum_probs=127.2
Q ss_pred HHHHHHHhccccc-CCCccccccchhhhhccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHH
Q 005344 158 KHAISKVGDFSDD-NRSGIDRSLHRISAIRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTL 233 (701)
Q Consensus 158 ~~~i~~I~~fs~d-~R~Gi~rtghRIs~ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTL 233 (701)
+-.++.|..++.+ ..+++.+ .|-+.... .+++.|+.+.|... .--+..+ |.+||++.|+|.||||||||
T Consensus 293 qvA~~kiakle~~~~~a~~~~-~q~~p~~~--~lelrnvrfay~~~----~FhvgPiNl~ikrGelvFliG~NGsGKST~ 365 (546)
T COG4615 293 QVAFNKIAKLELAPYKADFPR-PQAFPDWK--TLELRNVRFAYQDN----AFHVGPINLTIKRGELVFLIGGNGSGKSTL 365 (546)
T ss_pred HHHHHHHHHhhcCCccccCCC-CCcCCccc--ceeeeeeeeccCcc----cceecceeeEEecCcEEEEECCCCCcHHHH
Confidence 3445555555532 2233332 24455544 47888998888631 1123333 89999999999999999999
Q ss_pred HHHHHhcCCCCCCcEEEEEcCCccccc------------------------CCCCCCCC-C-------chhhhccC----
Q 005344 234 IREIARMLADDHMKRVVIVDTSNEIGG------------------------DGDVPHSG-I-------GRARRMQV---- 277 (701)
Q Consensus 234 LR~IaGlLsp~~GkrViiVd~~~EIa~------------------------~~~ip~~~-i-------g~~rr~~v---- 277 (701)
++.+.|++.|++|. +++|+..--+. ....+... + ..+....+
T Consensus 366 ~~LLtGL~~PqsG~--I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~ 443 (546)
T COG4615 366 AMLLTGLYQPQSGE--ILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGR 443 (546)
T ss_pred HHHHhcccCCCCCc--eeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCc
Confidence 99999999999999 88887632110 00000000 0 00001111
Q ss_pred -----CChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEe
Q 005344 278 -----PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQIL 344 (701)
Q Consensus 278 -----~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~ 344 (701)
.|.|+|+|+++-.|+.-+-+++++||=-...||.-++.+ ++.|+||+++|||-.-. ..+|+.+.+.
T Consensus 444 fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-~~ADrll~~~ 522 (546)
T COG4615 444 FSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHADRLLEMR 522 (546)
T ss_pred ccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-hhHHHHHHHh
Confidence 356999999999999999999999999999999998654 78999999999996654 5789999999
Q ss_pred CCeE
Q 005344 345 VGGI 348 (701)
Q Consensus 345 ~G~I 348 (701)
+|++
T Consensus 523 ~G~~ 526 (546)
T COG4615 523 NGQL 526 (546)
T ss_pred cCce
Confidence 9998
No 397
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.46 E-value=3.3e-13 Score=130.43 Aligned_cols=124 Identities=16% Similarity=0.213 Sum_probs=84.4
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCc-hhhhccCCChhHHHHHHHHHHHc
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIG-RARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig-~~rr~~v~s~G~qQRV~IArAL~ 293 (701)
.++.+++|+|||||||||+++.++-.+-...++-.. ..++..-...+...+. ..... -.+.|+++++.+++++.
T Consensus 19 ~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~i~~~~-~lS~G~~~~~~la~~L~ 93 (162)
T cd03227 19 GEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRR----RSGVKAGCIVAAVSAELIFTRL-QLSGGEKELSALALILA 93 (162)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc----cCcccCCCcceeeEEEEehhee-eccccHHHHHHHHHHHH
Confidence 345699999999999999999987776544432101 1111000001110000 00011 15779999999999998
Q ss_pred c----CCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEe
Q 005344 294 H----MPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQIL 344 (701)
Q Consensus 294 ~----~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~ 344 (701)
. +|+++|+|||++++|+.....+ ...|.++|++||+.++.. .+|+++.+.
T Consensus 94 ~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~~l~ 154 (162)
T cd03227 94 LASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE-LADKLIHIK 154 (162)
T ss_pred hcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEEEEE
Confidence 7 7899999999999999887443 233789999999999886 478887765
No 398
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.45 E-value=4.8e-13 Score=133.85 Aligned_cols=125 Identities=9% Similarity=0.081 Sum_probs=82.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCC-----C-------------cEEEEEcCCcccccCCCCCCCCC----------
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDH-----M-------------KRVVIVDTSNEIGGDGDVPHSGI---------- 269 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~-----G-------------krViiVd~~~EIa~~~~ip~~~i---------- 269 (701)
.+.+|+||||+||||||.+|.-.+.... | ..|.+..+..... ..+....
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~l~ 98 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLD---ANPLCVLSQDMARSFLT 98 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCcc---CCcCCHHHHHHHHHHhc
Confidence 3779999999999999999985443221 1 1121111110000 0000000
Q ss_pred -c--hhhhccCCChhHHHHHHHHHHH----ccCCCEEEEcCCCCcccHHHHHHH-------Hhc---CCEEEEEEcChhH
Q 005344 270 -G--RARRMQVPNVNMQHSVMIEAVE----NHMPETIIIDEIGTELEALAASTI-------AQR---GVQLVGTAHGMTI 332 (701)
Q Consensus 270 -g--~~rr~~v~s~G~qQRV~IArAL----~~~PdVIILDEPtsgLD~~a~~~l-------~e~---GvtVIiTTHd~~l 332 (701)
. ......-.+.|++|+++|++++ +++|+++|+|||++++|......+ ... +.++|+++|+++.
T Consensus 99 ~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~ 178 (198)
T cd03276 99 SNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG 178 (198)
T ss_pred cccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc
Confidence 0 0112233577999999999999 589999999999999999887433 222 3589999999999
Q ss_pred HHHhcCcEEEEeCC
Q 005344 333 DNIVKNPSLQILVG 346 (701)
Q Consensus 333 ~~~l~drvlvl~~G 346 (701)
+..+ |++.++..+
T Consensus 179 i~~~-d~v~~~~~~ 191 (198)
T cd03276 179 LASS-DDVKVFRMK 191 (198)
T ss_pred cccc-cceeEEEec
Confidence 8776 888777654
No 399
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.45 E-value=9.4e-13 Score=147.84 Aligned_cols=157 Identities=18% Similarity=0.279 Sum_probs=115.6
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc----------EEEEEc
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------RVVIVD 253 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------rViiVd 253 (701)
+..+++.++++.-+.. +..+++++ |.+|++++|.||||||||.|+|.++|+.+..+|+ .+.+++
T Consensus 431 Dn~i~~e~v~l~tPt~---g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflP 507 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN---GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLP 507 (659)
T ss_pred cceEEeeeeeecCCCC---CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEec
Confidence 3467888888866531 33466777 8999999999999999999999999999866552 366777
Q ss_pred CCcccccC---C--CCC------CC-------------------------CCc---hhhhccCCChhHHHHHHHHHHHcc
Q 005344 254 TSNEIGGD---G--DVP------HS-------------------------GIG---RARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 254 ~~~EIa~~---~--~ip------~~-------------------------~ig---~~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
|++....- . -+| .. ++. ....+++.|+|+|||+++||.+.+
T Consensus 508 QrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~ 587 (659)
T KOG0060|consen 508 QRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYH 587 (659)
T ss_pred CCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhc
Confidence 76432100 0 001 00 111 013456789999999999999999
Q ss_pred CCCEEEEcCCCCcccHHHH----HHHHhcCCEEEEEEcChhHHHHhcCcEEEEeCCe
Q 005344 295 MPETIIIDEIGTELEALAA----STIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~----~~l~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~ 347 (701)
.|++-|+||-|+++|...- +.+.+.|+|.|-++|-.++. .+.|.++.+..++
T Consensus 588 kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~-kfHd~~L~~~g~g 643 (659)
T KOG0060|consen 588 KPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLW-KFHDYVLRMDGRG 643 (659)
T ss_pred CCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHH-hhhhEEEEecCCC
Confidence 9999999999999887655 34478899999999988876 5677777776443
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.44 E-value=5.2e-13 Score=131.73 Aligned_cols=121 Identities=15% Similarity=0.179 Sum_probs=84.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCCCC-----cEEEEEcCCcc---------cccC---CCCCCCCCchhhhccCCChh
Q 005344 219 SILVIGPPGVGKTTLIREIARMLADDHM-----KRVVIVDTSNE---------IGGD---GDVPHSGIGRARRMQVPNVN 281 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp~~G-----krViiVd~~~E---------Ia~~---~~ip~~~ig~~rr~~v~s~G 281 (701)
+.+|+||||+|||++|.+|.-.+.-... ..+.++.+... +... ..+|+ .+...+.+.|
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~-----~~~~~~LS~G 98 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQ-----GKVEQILSGG 98 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecC-----CcCcccCCHH
Confidence 8999999999999999999765532210 10111011000 0000 01121 1234458999
Q ss_pred HHHHHHHHHHHc----cCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeC
Q 005344 282 MQHSVMIEAVEN----HMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILV 345 (701)
Q Consensus 282 ~qQRV~IArAL~----~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~ 345 (701)
++++++|+++++ .+|+++|+|||++++|+.....+ .+.|.++|+++|+.+... .+|+++.+..
T Consensus 99 e~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 99 EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 999999999986 68999999999999999988543 345799999999998775 7998887764
No 401
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.2e-12 Score=146.67 Aligned_cols=158 Identities=20% Similarity=0.182 Sum_probs=116.6
Q ss_pred ccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc-----
Q 005344 186 RNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE----- 257 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E----- 257 (701)
....+++.+++.. ..++|+ +.+||+++|.|--|+|+|-|+++|.|..++..|. +.+++..-
T Consensus 260 ~~~~l~v~~l~~~---------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~--i~l~G~~v~~~sp 328 (500)
T COG1129 260 GEPVLEVRNLSGG---------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGE--ILLDGKPVRIRSP 328 (500)
T ss_pred CCcEEEEecCCCC---------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCce--EEECCEEccCCCH
Confidence 3445566666542 124454 8899999999999999999999999988888776 55555410
Q ss_pred -------cccC-------CCCCCC------------------CCchh----------h-----------hccCCChhHHH
Q 005344 258 -------IGGD-------GDVPHS------------------GIGRA----------R-----------RMQVPNVNMQH 284 (701)
Q Consensus 258 -------Ia~~-------~~ip~~------------------~ig~~----------r-----------r~~v~s~G~qQ 284 (701)
+++. +.+... -+... + ...-+|+|.||
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQ 408 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQ 408 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhh
Confidence 0100 000000 00000 0 11225789999
Q ss_pred HHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecC
Q 005344 285 SVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLG 354 (701)
Q Consensus 285 RV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lg 354 (701)
+|.|++.|..+|++||+||||.|.|+-+..++ +..|++||++|-++.++..+||++++|..|++.....+
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999998544 78899999999999999999999999999999654333
No 402
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=1.8e-12 Score=155.30 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=64.9
Q ss_pred CChhHHHHHHHHHHHcc---CCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE----
Q 005344 278 PNVNMQHSVMIEAVENH---MPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI---- 343 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~~---~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl---- 343 (701)
.|+||+||+.||++|+. +|+++|+|||+++||+.....+ .+.|.|||+++|+.+++. .+|+++.+
T Consensus 829 LSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii~Lgp~~ 907 (924)
T TIGR00630 829 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADYIIDLGPEG 907 (924)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCc
Confidence 46799999999999997 5999999999999999998544 456999999999999885 69999999
Q ss_pred --eCCeEEEEecCcH
Q 005344 344 --LVGGIESVTLGDE 356 (701)
Q Consensus 344 --~~G~I~~V~lgd~ 356 (701)
..|++ +..|.+
T Consensus 908 G~~gG~i--v~~G~~ 920 (924)
T TIGR00630 908 GDGGGTI--VASGTP 920 (924)
T ss_pred cCCCCEE--EEeCCH
Confidence 67877 445554
No 403
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.43 E-value=5.5e-14 Score=138.76 Aligned_cols=140 Identities=20% Similarity=0.290 Sum_probs=103.3
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-------ccc----cC--CCCCC-------------C
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------EIG----GD--GDVPH-------------S 267 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------EIa----~~--~~ip~-------------~ 267 (701)
+..|+++-+||||||||||||-.++|+++- +|. +.+++.+ |++ +. ...|- .
T Consensus 22 v~aGe~~HliGPNGaGKSTLLA~lAGm~~~-sGs--i~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP 98 (248)
T COG4138 22 VRAGEILHLVGPNGAGKSTLLARMAGMTSG-SGS--IQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQP 98 (248)
T ss_pred cccceEEEEECCCCccHHHHHHHHhCCCCC-Cce--EEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCc
Confidence 788999999999999999999999999864 465 5566542 111 00 00000 0
Q ss_pred ---------------CCchh--hhccCCChhHHHHHHHHHHHcc-----C--CCEEEEcCCCCcccHHHHH-------HH
Q 005344 268 ---------------GIGRA--RRMQVPNVNMQHSVMIEAVENH-----M--PETIIIDEIGTELEALAAS-------TI 316 (701)
Q Consensus 268 ---------------~ig~~--rr~~v~s~G~qQRV~IArAL~~-----~--PdVIILDEPtsgLD~~a~~-------~l 316 (701)
+++.+ +...-.++|+-|||-+|++..+ + .+++++|||-++||+.... .+
T Consensus 99 ~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~ 178 (248)
T COG4138 99 DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178 (248)
T ss_pred hHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHH
Confidence 11110 1223357899999999987654 3 3699999999999997663 34
Q ss_pred HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 317 AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 317 ~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
+..|.+||++.||++-.-..+|+++.+..|.+ +..|..++
T Consensus 179 c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l--~~~G~~~e 218 (248)
T COG4138 179 CQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKL--LASGRREE 218 (248)
T ss_pred HhCCcEEEEeccchhhHHHHHHHHHHHhcCeE--Eeecchhh
Confidence 78899999999999999999999999999998 55666644
No 404
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=99.42 E-value=1.7e-12 Score=140.72 Aligned_cols=210 Identities=16% Similarity=0.178 Sum_probs=130.9
Q ss_pred HhhccCCCCeEEEEEeC-CCceEEecCCCceeeccccCCHHHHHHHHHHHhccccc----CCCccc---cccchhhhhcc
Q 005344 116 LCMHRELGDLIEVVMDL-GRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDD----NRSGID---RSLHRISAIRN 187 (701)
Q Consensus 116 l~~~~~~~~l~EI~L~~-GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs~d----~R~Gi~---rtghRIs~ir~ 187 (701)
|..+.++++|+||++|. |..|+.+.+. .... +.+++.++++.++..++.+... ..+-+. ++|+|+...-.
T Consensus 14 l~~~l~Dp~V~EI~iN~~~~V~v~~~g~-~~~~-~~~l~~~~~~~l~~~~a~~~~~~~~~~~Pil~a~LpdG~Rv~~v~p 91 (344)
T PRK13851 14 VLEWLDDPRTEEVAINRPGEAFVRQAGV-FTKF-PLPLSYDDLEDIAILAGALRKQDVGPRNPLCATELPGGERLQICLP 91 (344)
T ss_pred HHHHhcCCCCEEEEECCCCeEEEEECCE-EEEc-CCCCCHHHHHHHHHHHHHhcCCccccCCcEEEEECCCCeEEEEEec
Confidence 55667789999999997 8888776433 2223 2359999999999888776632 233332 56788875432
Q ss_pred ceEEE--EeEEEEECcccc------------c---------------------------ccceeccccccCCEEEEEcCC
Q 005344 188 RKMQV--IGLTCRVGRAVA------------G---------------------------SAEIICDLVEGGGSILVIGPP 226 (701)
Q Consensus 188 ~~IeI--~nLs~rygr~v~------------G---------------------------~~~~L~dlI~~GeiilIIGPN 226 (701)
+...- ..+++|...... + ....|..++..+.+++|.||+
T Consensus 92 P~~~~g~~sitIRk~~~~~~tl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~nilI~G~t 171 (344)
T PRK13851 92 PTVPSGTVSLTIRRPSSRVSELKEVSSRYDASRWNQWQERRKRRDQLDEAILRHYDNGDLEAFLHACVVGRLTMLLCGPT 171 (344)
T ss_pred ccccCCceEEEEEccCCCCCCHHHHHhhhcccccccccccccccchhhhhhhhccccHHHHHHHHHHHHcCCeEEEECCC
Confidence 22110 123333221100 0 001122237788999999999
Q ss_pred CCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCC-chh-hhccCCChhHHHHHHHHHHHccCCCEEEEcCC
Q 005344 227 GVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGI-GRA-RRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304 (701)
Q Consensus 227 GSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~i-g~~-rr~~v~s~G~qQRV~IArAL~~~PdVIILDEP 304 (701)
|||||||+++|++.++++ .+++.+++..|+.. ++... ... ..-.....+....-++..+|.++||+|+++|.
T Consensus 172 GSGKTTll~aLl~~i~~~--~rivtiEd~~El~l----~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~IivGEi 245 (344)
T PRK13851 172 GSGKTTMSKTLISAIPPQ--ERLITIEDTLELVI----PHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEM 245 (344)
T ss_pred CccHHHHHHHHHcccCCC--CCEEEECCCccccC----CCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEEEEee
Confidence 999999999999999865 56788888888743 22110 000 00001112334456778899999999999999
Q ss_pred CCcccHHHHHHHHhcCCE-EEEEEcChhHHH
Q 005344 305 GTELEALAASTIAQRGVQ-LVGTAHGMTIDN 334 (701)
Q Consensus 305 tsgLD~~a~~~l~e~Gvt-VIiTTHd~~l~~ 334 (701)
... ++...-.....|.. ++.|.|..+...
T Consensus 246 R~~-ea~~~l~a~~tGh~G~ltTiHa~s~~~ 275 (344)
T PRK13851 246 RDD-AAWAYLSEVVSGHPGSISTIHGANPVQ 275 (344)
T ss_pred CcH-HHHHHHHHHHhCCCcEEECCCCCCHHH
Confidence 955 34444444566764 778888765543
No 405
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.41 E-value=1.6e-12 Score=130.44 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=75.0
Q ss_pred ceeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-CCCcEEEEEcCC-cccccCCCCCCCCCchhhhccCCC-hhHH
Q 005344 208 EIICDL-VEGGGSILVIGPPGVGKTTLIREIARMLAD-DHMKRVVIVDTS-NEIGGDGDVPHSGIGRARRMQVPN-VNMQ 283 (701)
Q Consensus 208 ~~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-~~GkrViiVd~~-~EIa~~~~ip~~~ig~~rr~~v~s-~G~q 283 (701)
.+.+++ +..|++++|+||||||||||+|.|++...- ..|..| ... -.++....++.......-...... ....
T Consensus 15 ~v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v---~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~ 91 (199)
T cd03283 15 RVANDIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPV---CASSFELPPVKIFTSIRVSDDLRDGISYFYAEL 91 (199)
T ss_pred eecceEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEE---ecCccCcccceEEEeccchhccccccChHHHHH
Confidence 456677 788899999999999999999999986621 134322 111 011100011111110000000000 1112
Q ss_pred HHHHHHHHHcc--CCCEEEEcCCCCcccHHHHHH--------HHhcCCEEEEEEcChhHHHHh
Q 005344 284 HSVMIEAVENH--MPETIIIDEIGTELEALAAST--------IAQRGVQLVGTAHGMTIDNIV 336 (701)
Q Consensus 284 QRV~IArAL~~--~PdVIILDEPtsgLD~~a~~~--------l~e~GvtVIiTTHd~~l~~~l 336 (701)
.++.-+..... +|++||+|||++++|+..... +.+.|.++|++||+.+++..+
T Consensus 92 ~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 92 RRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 33333333334 999999999999999886632 245689999999999988765
No 406
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=99.41 E-value=5.7e-12 Score=137.84 Aligned_cols=212 Identities=18% Similarity=0.156 Sum_probs=129.4
Q ss_pred CCCeEEEEEeCCCceEEecCCCceeeccccCCHHHHHHHHHHHhccc------ccCCCc--------------cccc-cc
Q 005344 122 LGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS------DDNRSG--------------IDRS-LH 180 (701)
Q Consensus 122 ~~~l~EI~L~~GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs------~d~R~G--------------i~rt-gh 180 (701)
+.++.||+++.|+++..+..++...++.+.++++++..++..+.... ...+-+ ++.+ ..
T Consensus 21 ~~~~SDI~l~~g~~v~ir~~G~l~~~~~~~l~~~~~~~~i~~i~~~~~~~~l~~~~~vd~a~~~~~~~~g~~~l~~g~~~ 100 (372)
T TIGR02525 21 RHEVSDIHLQGGSPIVVERHGRQVPASSFPLDNLELERLVDEVFGPEIKPTVKSGAPVDRAIQLRGDENGRYGLGRGERV 100 (372)
T ss_pred hCCCceEEEcCCCCeEEEECCeEEECCCCCCCHHHHHHHHHHHhHHHHHHHHhccCCcccceecccccccceeccCCceE
Confidence 47899999999999999988877777767899999999999985321 001111 1100 01
Q ss_pred hh--hhhccc---eEEEEeEEEEECcc-c-----cccc-ceeccccccCCEEEEEcCCCCcHHHHHHHHHhcCCCC-CCc
Q 005344 181 RI--SAIRNR---KMQVIGLTCRVGRA-V-----AGSA-EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADD-HMK 247 (701)
Q Consensus 181 RI--s~ir~~---~IeI~nLs~rygr~-v-----~G~~-~~L~dlI~~GeiilIIGPNGSGKTTLLR~IaGlLsp~-~Gk 247 (701)
|| +.+.-. .-....+++|.-.. . .|.. .+++.++..+..++|.||+||||||+|++|++.+... .+.
T Consensus 101 rfR~n~~~~~~~~~~~~~~i~iR~~~~~~~~l~~lgl~~~~~~~l~~~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~ 180 (372)
T TIGR02525 101 RFRCNFIQATIGKLETAISLTLRVIPSDIPDLKQMGIEPDLFNSLLPAAGLGLICGETGSGKSTLAASIYQHCGETYPDR 180 (372)
T ss_pred EEEEEEecccccccCCCceEEEEeCCCcCCCHHHcCCCHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 22 111000 00001233333210 0 0111 1222235567799999999999999999999988532 246
Q ss_pred EEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEE
Q 005344 248 RVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTA 327 (701)
Q Consensus 248 rViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTT 327 (701)
+|+.+++..|+..... + .+......++........-++..+|.++||+|+++|.....++.++..+++.|+.++.|.
T Consensus 181 ~IvtiEdp~E~~~~~~--~-~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~vGEiRd~et~~~al~aa~TGH~v~tTl 257 (372)
T TIGR02525 181 KIVTYEDPIEYILGSP--D-DLLPPAQSQIGRDVDSFANGIRLALRRAPKIIGVGEIRDLETFQAAVLAGQSGHFCLGTL 257 (372)
T ss_pred eEEEEecCchhccCCC--c-eeecccccccCCCccCHHHHHHHhhccCCCEEeeCCCCCHHHHHHHHHHHhcCCcEEEee
Confidence 7888988877643211 0 000000111111111223566789999999999999997666666667789999999999
Q ss_pred cChhHHHHh
Q 005344 328 HGMTIDNIV 336 (701)
Q Consensus 328 Hd~~l~~~l 336 (701)
|..+..+.+
T Consensus 258 Ha~s~~~ai 266 (372)
T TIGR02525 258 HVKSPGEAI 266 (372)
T ss_pred CCCCHHHHH
Confidence 988766543
No 407
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.41 E-value=8.9e-13 Score=144.79 Aligned_cols=144 Identities=17% Similarity=0.227 Sum_probs=105.3
Q ss_pred eEEEEECcccccccceeccc--cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC------------cccc
Q 005344 194 GLTCRVGRAVAGSAEIICDL--VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS------------NEIG 259 (701)
Q Consensus 194 nLs~rygr~v~G~~~~L~dl--I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~------------~EIa 259 (701)
.+..|||-. . -.|..+ ..+|++++|+|+||.||||.+++|+|.+.|.-|+. +.. .|++
T Consensus 79 e~vHRYg~N---g-FkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~----~~pp~wdeVi~~FrGtELq 150 (591)
T COG1245 79 EVVHRYGVN---G-FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY----EDPPSWDEVIKRFRGTELQ 150 (591)
T ss_pred cceeeccCC---c-eEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC----CCCCCHHHHHHHhhhhHHH
Confidence 356788732 1 234455 67899999999999999999999999999987640 110 0110
Q ss_pred ------------------cCCCCCCC-------------------------CCch--hhhccCCChhHHHHHHHHHHHcc
Q 005344 260 ------------------GDGDVPHS-------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 260 ------------------~~~~ip~~-------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
+...+|.. ++.. .+...-+|+|+-||++||+++..
T Consensus 151 ~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~r 230 (591)
T COG1245 151 NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLR 230 (591)
T ss_pred HHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhc
Confidence 00111110 1110 12233468899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHH-------HHHhcCCEEEEEEcChhHHHHhcCcEEEEeC
Q 005344 295 MPETIIIDEIGTELEALAAS-------TIAQRGVQLVGTAHGMTIDNIVKNPSLQILV 345 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~-------~l~e~GvtVIiTTHd~~l~~~l~drvlvl~~ 345 (701)
+.|+.++|||++-||+..+. ++++.+..||++-||+...+.++|-+.++..
T Consensus 231 dADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 231 DADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred cCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 99999999999999998873 3455689999999999999999999888763
No 408
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=99.41 E-value=4.9e-12 Score=136.86 Aligned_cols=228 Identities=19% Similarity=0.242 Sum_probs=140.2
Q ss_pred HHHHHHHHcHHHHH--HHHhhccCCCCeEEEEEeC-CCceEEecCCCceeeccccCCHHHHHHHHHHHhcccc----cCC
Q 005344 100 ELELFLELLPSRMR--RELCMHRELGDLIEVVMDL-GRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSD----DNR 172 (701)
Q Consensus 100 ~l~~ll~~LP~~ir--~~l~~~~~~~~l~EI~L~~-GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs~----d~R 172 (701)
+..++.+.+-.++. ..|..+.++++++||.+|. +..|+.+ +++.+.......+.+++..++++++.+.. ...
T Consensus 37 ~~~~~~~~l~~~~~G~g~L~~ll~d~~VtdI~vng~~~v~v~~-~~~~~~~~~~f~~~~~~~~l~~~la~~~g~~l~~~~ 115 (340)
T TIGR03819 37 EVLAAARALRRELVGAGPLEPLLADPGVTDVLVNGPDEVWVDR-GEGLERTDVRFPDEAAVRRLAQRLAAAAGRRLDDAQ 115 (340)
T ss_pred HHHHHHHHHHHHHhCccchHHHHhCCCCEEEEEcCCCEEEEEE-CCeEEEcCCCcCCHHHHHHHHHHHHHHcCCcccCCC
Confidence 34445554444331 2355566788999999997 4466654 55544444445789999999999976652 233
Q ss_pred Cccc---cccchhhhhccceEE-EEeEEEEECcccc---------c-----ccceeccccccCCEEEEEcCCCCcHHHHH
Q 005344 173 SGID---RSLHRISAIRNRKMQ-VIGLTCRVGRAVA---------G-----SAEIICDLVEGGGSILVIGPPGVGKTTLI 234 (701)
Q Consensus 173 ~Gi~---rtghRIs~ir~~~Ie-I~nLs~rygr~v~---------G-----~~~~L~dlI~~GeiilIIGPNGSGKTTLL 234 (701)
+.+. ++++||..+..+.-. =..+++|..+... | ....|+.++..+.+++|.|++|||||||+
T Consensus 116 P~~d~~l~~g~Rv~~~~~pvs~~g~~i~IR~~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 116 PWVDGRLPDGTRLHAVLPPVATDGTCLSLRVPRPRTFTLDELVASGTFPPGVARLLRAIVAARLAFLISGGTGSGKTTLL 195 (340)
T ss_pred CeeEeECCCCEEEEEEecCccCCCcEEEEEeeCCccCCHHHHHHcCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH
Confidence 4443 356888755432100 0123444322110 1 01223334677889999999999999999
Q ss_pred HHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCch-hhhcc-C-CChhHHHHHHHHHHHccCCCEEEEcCCCCcccHH
Q 005344 235 REIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGR-ARRMQ-V-PNVNMQHSVMIEAVENHMPETIIIDEIGTELEAL 311 (701)
Q Consensus 235 R~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~-~rr~~-v-~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~ 311 (701)
+.+++++.++ .+++++++..|+... +.++-. ..+.. . ...+....-++..+|.++||+|+++|.... ++.
T Consensus 196 ~al~~~i~~~--~riv~iEd~~El~~~----~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~IivGEiRg~-Ea~ 268 (340)
T TIGR03819 196 SALLALVAPD--ERIVLVEDAAELRPD----HPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRIVVGEVRGA-EVV 268 (340)
T ss_pred HHHHccCCCC--CcEEEECCcceecCC----CCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeEEEeCcCcH-HHH
Confidence 9999999876 456888888887532 111100 00000 0 112233455778899999999999999954 454
Q ss_pred HHHHHHhcCCE-EEEEEcChhHHHH
Q 005344 312 AASTIAQRGVQ-LVGTAHGMTIDNI 335 (701)
Q Consensus 312 a~~~l~e~Gvt-VIiTTHd~~l~~~ 335 (701)
..-...+.|.. .+.|.|..+..+.
T Consensus 269 ~~l~a~~tGh~G~~tTiHA~s~~~~ 293 (340)
T TIGR03819 269 DLLAALNTGHDGGAGTLHANSPADV 293 (340)
T ss_pred HHHHHHHcCCCceEEeeCCCCHHHH
Confidence 44455678886 7888898765543
No 409
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=99.40 E-value=8.6e-13 Score=136.66 Aligned_cols=211 Identities=18% Similarity=0.201 Sum_probs=127.2
Q ss_pred HhhccCCCCeEEEEEeCCCceEEecCCCceeeccccCCHHHHHHHHHHHhcccc----cCCCcc----ccccchhhhhcc
Q 005344 116 LCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSD----DNRSGI----DRSLHRISAIRN 187 (701)
Q Consensus 116 l~~~~~~~~l~EI~L~~GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs~----d~R~Gi----~rtghRIs~ir~ 187 (701)
|+.+.+++++.||.++.+........++........++.+++..+++.+..+.. ..++.. ...++|+.....
T Consensus 4 l~~~l~d~~~sdI~i~~~~~v~v~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~~~~~~~R~~i~~~ 83 (270)
T PF00437_consen 4 LEPLLDDPEVSDIHINGPDEVWVKRIGGWVRSPVRFLSEEELERLIRRLASAAGREINERNPIQDGELPGDGIRVRITTP 83 (270)
T ss_dssp HHHHHHHTTECEEEEESTTEEEEEETTEEEEEESTTCGHHHHHHHHHHHHHHTTHHHHCCSSEEEEEECTTSEEEEEEET
T ss_pred hhHhhCCCCCEEEEEECCCeEEEEEcCcEEEEeCCCCCHHHHHHHHHHHHHHhhhhHHhhCcceeeEEeeCCeEEEEEEc
Confidence 444455689999999986654443344434444556899999999999976552 122222 225666653322
Q ss_pred ceEEEEeEEEEECccc------cccc--------ceeccccccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEc
Q 005344 188 RKMQVIGLTCRVGRAV------AGSA--------EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVD 253 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v------~G~~--------~~L~dlI~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd 253 (701)
+...-..+++|..... .+.. ..|...+..+.+++|.|++||||||+++.++..+.+. ..++++++
T Consensus 84 p~~~~~~~~iR~~~~~~~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~iE 162 (270)
T PF00437_consen 84 PVSGGPTIVIRKFSSKPFSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-DERIVTIE 162 (270)
T ss_dssp TTSTSEEEEEEEETSS--CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEEE
T ss_pred CCcCCcccceeccccccccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc-ccceEEec
Confidence 2111134555532111 0000 1122225568999999999999999999999999877 67889999
Q ss_pred CCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEE-EEEEcChhH
Q 005344 254 TSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQL-VGTAHGMTI 332 (701)
Q Consensus 254 ~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtV-IiTTHd~~l 332 (701)
+..|+... +..... +.....+....-++..+|.++||+|+++|+.+...... ..+.+.|..+ +.|.|..+.
T Consensus 163 d~~E~~l~----~~~~~~---~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~-~~a~~tGh~~~~tT~Ha~s~ 234 (270)
T PF00437_consen 163 DPPELRLP----GPNQIQ---IQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEA-IQAANTGHLGSLTTLHANSA 234 (270)
T ss_dssp SSS-S--S----CSSEEE---EEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHH-HHHHHTT-EEEEEEEE-SSH
T ss_pred cccceeec----ccceEE---EEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHH-HHhhccCCceeeeeeecCCH
Confidence 88887432 211110 00002223344567789999999999999997754444 6778999999 999998765
Q ss_pred HHH
Q 005344 333 DNI 335 (701)
Q Consensus 333 ~~~ 335 (701)
.+.
T Consensus 235 ~~~ 237 (270)
T PF00437_consen 235 EDA 237 (270)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 410
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.6e-12 Score=144.48 Aligned_cols=168 Identities=14% Similarity=0.144 Sum_probs=122.3
Q ss_pred hhccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------EEEEEc
Q 005344 184 AIRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------RVVIVD 253 (701)
Q Consensus 184 ~ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------rViiVd 253 (701)
.+..+.+++..+++.|.- +....+.++ ++...-++++|+||+||||+++++.+.+.|..|. +|.++.
T Consensus 357 ~~~~p~l~i~~V~f~y~p---~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~ 433 (582)
T KOG0062|consen 357 VLSPPNLRISYVAFEYTP---SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFA 433 (582)
T ss_pred cCCCCeeEEEeeeccCCC---cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchh
Confidence 355667888899988873 222345555 4555678999999999999999999999887652 334433
Q ss_pred CCcccc---------------cCCCCCC--------CCCch---hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCc
Q 005344 254 TSNEIG---------------GDGDVPH--------SGIGR---ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE 307 (701)
Q Consensus 254 ~~~EIa---------------~~~~ip~--------~~ig~---~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsg 307 (701)
|. ++. ..+..+. +++.. ...+.-+|+||+-||++|++..++|.+|||||||+.
T Consensus 434 Qh-hvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNh 512 (582)
T KOG0062|consen 434 QH-HVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNH 512 (582)
T ss_pred Hh-hhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCcc
Confidence 32 110 0011000 11111 012445789999999999999999999999999999
Q ss_pred ccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCc
Q 005344 308 LEALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGD 355 (701)
Q Consensus 308 LD~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd 355 (701)
||..+...+ ..-+-.||++|||.+++..+|+.+++..+|++..++-+-
T Consensus 513 LD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 513 LDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccH
Confidence 999988555 455678999999999999999999999999998765443
No 411
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.40 E-value=3.8e-12 Score=159.29 Aligned_cols=78 Identities=17% Similarity=0.148 Sum_probs=66.2
Q ss_pred CChhHHHHHHHHHHHc---cCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEe---
Q 005344 278 PNVNMQHSVMIEAVEN---HMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQIL--- 344 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~---~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~--- 344 (701)
.|+||+||++||++|+ ++|+++|+||||++||+.....+ ++.|.|||+++|+++++ .++|+++.|.
T Consensus 810 LSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~g 888 (1809)
T PRK00635 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEG 888 (1809)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCC
Confidence 4679999999999997 69999999999999999998544 56799999999999998 7999999995
Q ss_pred ---CCeEEEEecCcHHH
Q 005344 345 ---VGGIESVTLGDEEA 358 (701)
Q Consensus 345 ---~G~I~~V~lgd~~a 358 (701)
.|++ +..++++.
T Consensus 889 g~~~G~i--v~~Gtpee 903 (1809)
T PRK00635 889 GNLGGYL--LASCSPEE 903 (1809)
T ss_pred CCCCCEE--EEeCCHHH
Confidence 5666 44565543
No 412
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=99.40 E-value=1.2e-12 Score=140.31 Aligned_cols=225 Identities=20% Similarity=0.301 Sum_probs=149.2
Q ss_pred HHhhccCCCCeEEEEEeC-CCceEEecCCCceeeccccCCHHHHHHHHHHHhccc----ccCCCccc---cccchhhhhc
Q 005344 115 ELCMHRELGDLIEVVMDL-GRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS----DDNRSGID---RSLHRISAIR 186 (701)
Q Consensus 115 ~l~~~~~~~~l~EI~L~~-GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs----~d~R~Gi~---rtghRIs~ir 186 (701)
.|+.+..++.+.||+++. ++.|+.+ +++....+-...++.++..++++++.-- ++..+.+. +.|+||++.-
T Consensus 49 ~Le~ll~dd~i~dImVn~~~~v~v~~-~~~~~~t~irf~d~~~l~~ii~ria~~vgrriD~~~P~~darLpdGsRvna~~ 127 (355)
T COG4962 49 PLEPLLADDDIEDIMVNGPGRVFVER-KGGLEPTDIRFLDEAALLRIIQRIAAAVGRRIDESQPIVDARLPDGSRLNANS 127 (355)
T ss_pred cchhhhcCCCceeEEecCCCcEEEEe-cCccccCCcccCCHHHHHHHHHHHHHHhCCccccCCceeeeeCCCCceEEeec
Confidence 455566788999999997 6777777 5555544444678899999999986422 34445442 5778886322
Q ss_pred ------cceEEEEeEEE---------EECcccccccceeccccccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEE
Q 005344 187 ------NRKMQVIGLTC---------RVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVI 251 (701)
Q Consensus 187 ------~~~IeI~nLs~---------rygr~v~G~~~~L~dlI~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrVii 251 (701)
.+.+.|..+.+ .|+......+..|+.++..+.+++|.|.+||||||||+++++.++++. ||+.
T Consensus 128 pPva~dGp~lsIRKf~k~~ltl~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~e--RvIt 205 (355)
T COG4962 128 PPVAIDGPTLSIRKFPKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDE--RVIT 205 (355)
T ss_pred CccccCCCcccccccccccccHHHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcc--cEEE
Confidence 22222322221 112111122334444467778999999999999999999999998874 8899
Q ss_pred EcCCcccccCCCCCCCCCchh--hhccCC-ChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEc
Q 005344 252 VDTSNEIGGDGDVPHSGIGRA--RRMQVP-NVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAH 328 (701)
Q Consensus 252 Vd~~~EIa~~~~ip~~~ig~~--rr~~v~-s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTH 328 (701)
+.+..|++. +|..+-.. +.-.+. .+....+-++.-+|.++||.||+.|.. |-++... .+.+.|.|
T Consensus 206 iEDtaELql----~~ph~vrL~TR~~n~Eg~gevtm~dLvkn~LRmRPDRIiVGEVR-G~Ea~dL-------L~AmnTGH 273 (355)
T COG4962 206 IEDTAELQL----AHPHVVRLETRPPNVEGTGEVTMRDLVKNALRMRPDRIIVGEVR-GVEALDL-------LQAMNTGH 273 (355)
T ss_pred Eeehhhhcc----CCCceEEEeecCCCCCCcceEEHHHHHHHHhhcCccceEEEEec-CccHHHH-------HHHhccCC
Confidence 988888754 33222111 111111 112234455677899999999999998 6676665 45677889
Q ss_pred ChhHHHHhcCcEEEEeCCeEEEEecCcHHHHhhhhHHHHhhc
Q 005344 329 GMTIDNIVKNPSLQILVGGIESVTLGDEEAKKRKVQKTILER 370 (701)
Q Consensus 329 d~~l~~~l~drvlvl~~G~I~~V~lgd~~a~~r~~qe~Iler 370 (701)
+|++.++|.+++.....+++..+.+.
T Consensus 274 ----------------dG~~~TlHans~~ea~~rle~l~~~~ 299 (355)
T COG4962 274 ----------------DGGMGTLHANSPREALTRLEQLIAEG 299 (355)
T ss_pred ----------------CCcceeeccCCHHHHHHHHHHHHHhh
Confidence 89999999999887777766655543
No 413
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=99.39 E-value=7e-12 Score=135.48 Aligned_cols=210 Identities=18% Similarity=0.250 Sum_probs=127.1
Q ss_pred CCeEEEEEeCCCceEEecCCCceeeccccCCHHHHHHHHHHHhccccc---CCCccc------cccch--hhhhccceEE
Q 005344 123 GDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDD---NRSGID------RSLHR--ISAIRNRKMQ 191 (701)
Q Consensus 123 ~~l~EI~L~~GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs~d---~R~Gi~------rtghR--Is~ir~~~Ie 191 (701)
....+|++..+.++..|..++...+...+++.+++..++..+..+... .+.|-. ..++| ++.+....
T Consensus 12 ~~aSDIhi~~~~~v~~R~~G~l~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~r~R~~~~~~~~-- 89 (343)
T TIGR01420 12 NGASDIHLTAGSPPAMRIDGDLVRIEFEPLTPEDTQKLLREILSEKQREEFEENGELDFSYSLPGVSRFRVNAFKQRG-- 89 (343)
T ss_pred CCCcEEEEECCCeEEEEECCEEEEcCCCCCCHHHHHHHHHHHhHHHHHhhhcccCcEEEEEEcCCCcEEEEEEeecCC--
Confidence 567889999999888888877776666678999999999888644311 111210 11222 22221100
Q ss_pred EEeEEEEECccc------ccccceeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCC
Q 005344 192 VIGLTCRVGRAV------AGSAEIICDL-VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDV 264 (701)
Q Consensus 192 I~nLs~rygr~v------~G~~~~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~i 264 (701)
-..+.+|.-... .|..+.+..+ ...+++++|.||+||||||+|+.|++.+....+.+|+++.+..|+......
T Consensus 90 g~~~viR~~~~~~~~l~~lg~~~~l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~ 169 (343)
T TIGR01420 90 GVALVLRLIPSKIPTFEELGLPPVLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKR 169 (343)
T ss_pred CeEEEEEcCCCCCCCHHHcCCCHHHHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCcc
Confidence 011222221100 0111222222 346789999999999999999999998865545678888877665321110
Q ss_pred CCCCCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChhHHHHhcCcE
Q 005344 265 PHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPS 340 (701)
Q Consensus 265 p~~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~l~~~l~drv 340 (701)
. + .....+.....-..-+++.+|.++||+|++||++..........+++.|..++.|.|..+....+ +++
T Consensus 170 ~---~--i~q~evg~~~~~~~~~l~~~lr~~pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~Ha~~~~~~~-~Rl 239 (343)
T TIGR01420 170 S---L--INQREVGLDTLSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLHTNSAAQTI-ERI 239 (343)
T ss_pred c---e--EEccccCCCCcCHHHHHHHhhccCCCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEcCCCHHHHH-HHH
Confidence 0 0 00011111112234567889999999999999994444443445578899999999998776543 444
No 414
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.37 E-value=8.1e-12 Score=149.94 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=66.1
Q ss_pred CChhHHHHHHHHHHHccCC---CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE----
Q 005344 278 PNVNMQHSVMIEAVENHMP---ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI---- 343 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~~~P---dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl---- 343 (701)
.|+|++||+.||++++.+| +++|+|||+++||+.....+ .+.|.|||+++|+.+++. .+|+++.+
T Consensus 831 LSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~Lgp~~ 909 (943)
T PRK00349 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLGPEG 909 (943)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEecCCc
Confidence 4679999999999999999 99999999999999988544 456999999999999985 79999999
Q ss_pred --eCCeEEEEecCcH
Q 005344 344 --LVGGIESVTLGDE 356 (701)
Q Consensus 344 --~~G~I~~V~lgd~ 356 (701)
..|++ +..|..
T Consensus 910 G~~~G~I--v~~Gt~ 922 (943)
T PRK00349 910 GDGGGEI--VATGTP 922 (943)
T ss_pred CCCCCEE--EEeCCH
Confidence 67888 556665
No 415
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.34 E-value=8.5e-13 Score=158.93 Aligned_cols=166 Identities=18% Similarity=0.227 Sum_probs=107.5
Q ss_pred EEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC--CCc---------------EEE
Q 005344 191 QVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADD--HMK---------------RVV 250 (701)
Q Consensus 191 eI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~--~Gk---------------rVi 250 (701)
...++++..... .+..++|+++ +.+|-.++|+|++||||||||+.|+|-..-. .|. +++
T Consensus 789 ~w~dl~~~~~~q-G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~G 867 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQ-GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSG 867 (1391)
T ss_pred EEEeCCcccccc-ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccc
Confidence 345555555322 1456789998 9999999999999999999999999976321 122 223
Q ss_pred EEcCCcc-cc-----------cCCCCCCCCCchhh--------------------hccC----CChhHHHHHHHHHHHcc
Q 005344 251 IVDTSNE-IG-----------GDGDVPHSGIGRAR--------------------RMQV----PNVNMQHSVMIEAVENH 294 (701)
Q Consensus 251 iVd~~~E-Ia-----------~~~~ip~~~ig~~r--------------------r~~v----~s~G~qQRV~IArAL~~ 294 (701)
|+.|.+. +. +.-..|+ .++..+ ..+. ++.++|+|+.|+-=|+.
T Consensus 868 YvqQ~DiH~~~~TVrESL~fSA~LRlp~-~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA 946 (1391)
T KOG0065|consen 868 YVEQQDIHSPELTVRESLRFSAALRLPK-EVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVA 946 (1391)
T ss_pred eeecccccCcccchHHHHHHHHHHcCCC-cCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEec
Confidence 3333211 00 0000000 011000 0111 34588999999988999
Q ss_pred CC-CEEEEcCCCCcccHHHH-------HHHHhcCCEEEEEEcChhH-HHHhcCcEEEEeCCeEEEEecCcHHHH
Q 005344 295 MP-ETIIIDEIGTELEALAA-------STIAQRGVQLVGTAHGMTI-DNIVKNPSLQILVGGIESVTLGDEEAK 359 (701)
Q Consensus 295 ~P-dVIILDEPtsgLD~~a~-------~~l~e~GvtVIiTTHd~~l-~~~l~drvlvl~~G~I~~V~lgd~~a~ 359 (701)
+| -+|+|||||+|||+.++ +.++..|.+|+.|-|..+. +-..-|+.+.|..|+= .|-.|+....
T Consensus 947 ~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGq-tVY~G~lG~~ 1019 (1391)
T KOG0065|consen 947 NPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQ-TVYFGPLGEN 1019 (1391)
T ss_pred CCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCe-EEEecCcccc
Confidence 99 89999999999999998 3447889999999998752 3344577777776662 2445555333
No 416
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.33 E-value=9.9e-12 Score=126.79 Aligned_cols=137 Identities=17% Similarity=0.129 Sum_probs=89.0
Q ss_pred eeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-CCCcEEEEEcCCc-ccccCC-CCCCCCCchhhhccCCChhH
Q 005344 209 IICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-DHMKRVVIVDTSN-EIGGDG-DVPHSGIGRARRMQVPNVNM 282 (701)
Q Consensus 209 ~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-~~GkrViiVd~~~-EIa~~~-~ip~~~ig~~rr~~v~s~G~ 282 (701)
+.+++ ..++++++|.||||+||||||+.|+-..-- ..|- +++... .+.... .+...++... ...-.+.++
T Consensus 19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~---~vpa~~~~~~~~~~il~~~~l~d~-~~~~lS~~~ 94 (222)
T cd03285 19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGC---FVPCDSADIPIVDCILARVGASDS-QLKGVSTFM 94 (222)
T ss_pred EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCC---CcCcccEEEeccceeEeeeccccc-hhcCcChHH
Confidence 34455 346789999999999999999998732100 0110 111110 110000 0111111111 122346788
Q ss_pred HHHHHHHHHH--ccCCCEEEEcCC---CCcccHHHHHH-----HHh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEE
Q 005344 283 QHSVMIEAVE--NHMPETIIIDEI---GTELEALAAST-----IAQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIES 350 (701)
Q Consensus 283 qQRV~IArAL--~~~PdVIILDEP---tsgLD~~a~~~-----l~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~ 350 (701)
+++..+++++ +.+|+++|+||| |+++|..+... +.+ .|.++|++||. ..+..+|+++..+..|.+..
T Consensus 95 ~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~ 172 (222)
T cd03285 95 AEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTA 172 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEE
Confidence 9999999888 789999999999 88899987632 233 58999999996 66677899988888888743
No 417
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=99.31 E-value=4.3e-11 Score=130.42 Aligned_cols=214 Identities=18% Similarity=0.190 Sum_probs=127.0
Q ss_pred CCCeEEEEEeCCCceEEecCCCceeeccccCCHHHHHHHHHHHhcc------cc----cCCCcc-ccc----cchhhhhc
Q 005344 122 LGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDF------SD----DNRSGI-DRS----LHRISAIR 186 (701)
Q Consensus 122 ~~~l~EI~L~~GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~f------s~----d~R~Gi-~rt----ghRIs~ir 186 (701)
..+..+|++..|.++..+..+....+....++++++..++..+... .. +..-.+ +.. ..|++...
T Consensus 15 ~~~aSDIhi~~~~~i~~ri~G~l~~~~~~~l~~~~~~~li~~l~~~~~~~~~~~~~di~~~~~~~~~~~~~~~~Rv~~~~ 94 (358)
T TIGR02524 15 RLGASDITIQTGEAIFAEVYGRLLKITNRELSNAELGDLINAIYGPNATTQILRGEDIDTHYEFRPNRGERFRYRINATA 94 (358)
T ss_pred HCCCcEEEEECCCceEEEECCEEEEecCCCCCHHHHHHHHHHHhhHHHHHHHHhCCCcccccccccCCCCeEEEEEEeEe
Confidence 3678999999999888887776666666679999999988877321 10 000001 111 12343322
Q ss_pred cc--eEEEEeEEEEECcc-c-----ccccceeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC--CCcEEEEEcCC
Q 005344 187 NR--KMQVIGLTCRVGRA-V-----AGSAEIICDL-VEGGGSILVIGPPGVGKTTLIREIARMLADD--HMKRVVIVDTS 255 (701)
Q Consensus 187 ~~--~IeI~nLs~rygr~-v-----~G~~~~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~--~GkrViiVd~~ 255 (701)
.. ...-..+++|.-.. . .|....+... ..+++.++|+||+||||||+|++|++.+.+. .+.+|+.+++.
T Consensus 95 ~~~~~~~g~~~vlR~l~~~~~~l~~l~~~~~~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edp 174 (358)
T TIGR02524 95 CHVDGHDAIQITIRAIPAEPPKLSKLDLPAAIIDAIAPQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAP 174 (358)
T ss_pred cccCCCCceEEEEEecCCCCCCHHHcCCCHHHHHHHhccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 10 00011233333111 0 0111111111 3478999999999999999999999998543 45678888777
Q ss_pred cccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChhHHHH
Q 005344 256 NEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335 (701)
Q Consensus 256 ~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~l~~~ 335 (701)
.|+..... ... .+......+........-.+..+|.++|++|+++|+.....+.++..+++.|..++.|.|..+....
T Consensus 175 iE~~~~~~-~~~-~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~ 252 (358)
T TIGR02524 175 IEFVYDEI-ETI-SASVCQSEIPRHLNNFAAGVRNALRRKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAET 252 (358)
T ss_pred ceEecccc-ccc-cceeeeeeccccccCHHHHHHHHhccCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHH
Confidence 66532210 000 0000011111111223455667899999999999999655555566678899999999999887665
Q ss_pred hc
Q 005344 336 VK 337 (701)
Q Consensus 336 l~ 337 (701)
+.
T Consensus 253 i~ 254 (358)
T TIGR02524 253 IR 254 (358)
T ss_pred HH
Confidence 44
No 418
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.30 E-value=1.9e-11 Score=129.03 Aligned_cols=203 Identities=19% Similarity=0.294 Sum_probs=138.4
Q ss_pred CCeEEEEEeCCCceEEecCCCceeeccccCCHHHHHHHHHHHhc------ccc----cC---CCccccccchhhhhccce
Q 005344 123 GDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGD------FSD----DN---RSGIDRSLHRISAIRNRK 189 (701)
Q Consensus 123 ~~l~EI~L~~GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~------fs~----d~---R~Gi~rtghRIs~ir~~~ 189 (701)
.+...|+|..|-||..|..+....++..++|+++....+..+-+ |.. |. -+|+.| .|++.+..+.
T Consensus 15 ~~aSDiHL~~G~pp~~Ri~G~l~~~~~p~lt~~~~~~l~~~il~~~q~~~~~~~~E~Dfs~~~~~~~R--fRvN~f~qr~ 92 (353)
T COG2805 15 NGASDLHLSAGLPPRIRIDGELRPINYPPLTAEDVQSLLREILNDDQRKILEENGELDFSYTLPGVAR--FRVNAFKQRG 92 (353)
T ss_pred cCCCchhhccCCCceEEecCceeecCCCCCCHHHHHHHHHHHhCHHHHHHHHHhcceeEEEecCCcce--EEeehhhhcC
Confidence 34566999999999999988888888555999999988888731 111 11 122222 5666555442
Q ss_pred ---EEEEeEEEEECcc-cccccceecccc-ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccC---
Q 005344 190 ---MQVIGLTCRVGRA-VAGSAEIICDLV-EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGD--- 261 (701)
Q Consensus 190 ---IeI~nLs~rygr~-v~G~~~~L~dlI-~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~--- 261 (701)
+-+.-+...+... ..|..+++.+++ .+.+.+++.||+||||||+|-.|...+......+|+.+++.-|....
T Consensus 93 ~~a~vlR~Ip~~i~~~e~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skk 172 (353)
T COG2805 93 GYALVLRLIPSKIPTLEELGLPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKK 172 (353)
T ss_pred CcEEEEeccCccCCCHHHcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchH
Confidence 2233333222211 123345566663 45679999999999999999999999988877889999887665322
Q ss_pred CCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChhHHHH
Q 005344 262 GDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335 (701)
Q Consensus 262 ~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~l~~~ 335 (701)
..+.+.. +.......--++.+||..+||||++.|...-.....+-++++.|.-|+.|.|..+.+..
T Consensus 173 slI~QRE--------vG~dT~sF~~aLraALReDPDVIlvGEmRD~ETi~~ALtAAETGHLV~~TLHT~sA~~t 238 (353)
T COG2805 173 SLINQRE--------VGRDTLSFANALRAALREDPDVILVGEMRDLETIRLALTAAETGHLVFGTLHTNSAAKT 238 (353)
T ss_pred hhhhHHH--------hcccHHHHHHHHHHHhhcCCCEEEEeccccHHHHHHHHHHHhcCCEEEEecccccHHHH
Confidence 1111112 22223334567888999999999999999655566667779999999999999887754
No 419
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.27 E-value=1.4e-11 Score=124.81 Aligned_cols=70 Identities=11% Similarity=0.040 Sum_probs=54.2
Q ss_pred CChhHHHHHHHHHHH----ccCCCEEEEcCCCCcccHHHHHHH-------Hhc-C-CEEEEEEcChhHHHHhcC--cEEE
Q 005344 278 PNVNMQHSVMIEAVE----NHMPETIIIDEIGTELEALAASTI-------AQR-G-VQLVGTAHGMTIDNIVKN--PSLQ 342 (701)
Q Consensus 278 ~s~G~qQRV~IArAL----~~~PdVIILDEPtsgLD~~a~~~l-------~e~-G-vtVIiTTHd~~l~~~l~d--rvlv 342 (701)
.+.||||++.+++++ +.+|+++|+|||+++||+.....+ .+. | .++|++||++.....+++ ++++
T Consensus 127 LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~ 206 (213)
T cd03277 127 QSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLC 206 (213)
T ss_pred ccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEE
Confidence 467999998877554 479999999999999999988544 334 5 579999999877666666 5666
Q ss_pred EeCCe
Q 005344 343 ILVGG 347 (701)
Q Consensus 343 l~~G~ 347 (701)
+.+|+
T Consensus 207 l~~g~ 211 (213)
T cd03277 207 VYNGP 211 (213)
T ss_pred EecCc
Confidence 66664
No 420
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.26 E-value=1.5e-11 Score=136.98 Aligned_cols=156 Identities=16% Similarity=0.283 Sum_probs=105.7
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCC-------cEEEEEcCCcccc
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHM-------KRVVIVDTSNEIG 259 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~G-------krViiVd~~~EIa 259 (701)
|.++|+-+-.+ .+.-++..+ |++|-.++|+||||||||.|.|+|.|+.+-..| .++.|++|++...
T Consensus 482 I~lenIpvItP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms 557 (728)
T KOG0064|consen 482 IILENIPVITP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMS 557 (728)
T ss_pred eEEecCceecc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccC
Confidence 45555544333 222345555 899999999999999999999999999877655 3567777775432
Q ss_pred cC---CCC--CC-------CCCch-------------------------hhhccCCChhHHHHHHHHHHHccCCCEEEEc
Q 005344 260 GD---GDV--PH-------SGIGR-------------------------ARRMQVPNVNMQHSVMIEAVENHMPETIIID 302 (701)
Q Consensus 260 ~~---~~i--p~-------~~ig~-------------------------~rr~~v~s~G~qQRV~IArAL~~~PdVIILD 302 (701)
.- .++ |. .+++. .+..++.++|+|||+.+||..-|+|++-++|
T Consensus 558 ~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLD 637 (728)
T KOG0064|consen 558 GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLD 637 (728)
T ss_pred cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhh
Confidence 10 000 00 01110 1233467889999999999999999999999
Q ss_pred CCCCcc--cHHHH--HHHHhcCCEEEEEEcChhHHHHhcCcEEEE-eCCeEEE
Q 005344 303 EIGTEL--EALAA--STIAQRGVQLVGTAHGMTIDNIVKNPSLQI-LVGGIES 350 (701)
Q Consensus 303 EPtsgL--D~~a~--~~l~e~GvtVIiTTHd~~l~~~l~drvlvl-~~G~I~~ 350 (701)
|-|++. |.+.. +.++..|++++-+||..++.. +.+..+.. -.|+++.
T Consensus 638 EcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk-~h~~ll~~dg~g~~q~ 689 (728)
T KOG0064|consen 638 ECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWK-YHTHLLEFDGEGGWQF 689 (728)
T ss_pred hhhcccccchHHHHHHHHHhcCceEEEeecCccHHH-HHHHHHhccCCCCeee
Confidence 999975 44443 445778999999999988764 33333333 3455543
No 421
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.26 E-value=3.5e-11 Score=120.35 Aligned_cols=120 Identities=18% Similarity=0.283 Sum_probs=81.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCC
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPE 297 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~Pd 297 (701)
+.++|.||+||||||+++.|++.+.+..+.+|+.+.+..|....... .......+........-+++.++.++|+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~-----~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKR-----SLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCcc-----ceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 47899999999999999999999876555667777776554211100 0000001111111223467889999999
Q ss_pred EEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChhHHHHhcCcEEEE
Q 005344 298 TIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQI 343 (701)
Q Consensus 298 VIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~l~~~l~drvlvl 343 (701)
+|++||++..........++..|..++.|+|..+... ..++++.+
T Consensus 77 ~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~~~-~~~Rl~~l 121 (198)
T cd01131 77 VILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAAK-TIDRIIDV 121 (198)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcHHH-HHhHHHhh
Confidence 9999999866555555566788999999999998765 45666544
No 422
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.25 E-value=3.2e-11 Score=121.72 Aligned_cols=126 Identities=16% Similarity=0.140 Sum_probs=77.1
Q ss_pred eeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCC-CCCcEEEEEcCC-cccccCC-CCCCCCCch--hhhccCCCh
Q 005344 209 IICDL---VEGGGSILVIGPPGVGKTTLIREIARMLAD-DHMKRVVIVDTS-NEIGGDG-DVPHSGIGR--ARRMQVPNV 280 (701)
Q Consensus 209 ~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp-~~GkrViiVd~~-~EIa~~~-~ip~~~ig~--~rr~~v~s~ 280 (701)
+.+++ +..|++++|+||||+||||+++.|+++.-- ..|. +++.. ..+.... .+...+... .+.....+.
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~---~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~ 94 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGC---FVPAEYATLPIFNRLLSRLSNDDSMERNLSTFAS 94 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCC---CcchhhcCccChhheeEecCCccccchhhhHHHH
Confidence 44555 556799999999999999999999865411 1121 11110 0110000 000001110 001111234
Q ss_pred hHHHHHHHHHHHccCCCEEEEcCCCCcccHHHH--------HHHHhcCCEEEEEEcChhHHHHhcC
Q 005344 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAA--------STIAQRGVQLVGTAHGMTIDNIVKN 338 (701)
Q Consensus 281 G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~--------~~l~e~GvtVIiTTHd~~l~~~l~d 338 (701)
|+++. ..+..++..|+++|+|||+.++|+... +.+.+.|.++|++||+.++++.+++
T Consensus 95 e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 95 EMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhc
Confidence 66654 455567889999999999999988643 2335679999999999999987764
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.22 E-value=7.6e-11 Score=119.53 Aligned_cols=113 Identities=17% Similarity=0.216 Sum_probs=72.8
Q ss_pred cccC--CEEEEEcCCCCcHHHHHHHHHh--cCCCCCCc-------EEEEEcCCcccccCCCCCCCCCchhhh-ccCCC--
Q 005344 214 VEGG--GSILVIGPPGVGKTTLIREIAR--MLADDHMK-------RVVIVDTSNEIGGDGDVPHSGIGRARR-MQVPN-- 279 (701)
Q Consensus 214 I~~G--eiilIIGPNGSGKTTLLR~IaG--lLsp~~Gk-------rViiVd~~~EIa~~~~ip~~~ig~~rr-~~v~s-- 279 (701)
+..+ ..++|.||||+|||||||.|+. ++. ..|. ++.++++-.. .++.... ..-.+
T Consensus 24 l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la-~~G~~v~a~~~~~~~~d~i~~----------~l~~~~si~~~~S~f 92 (213)
T cd03281 24 IGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA-HIGSFVPADSATIGLVDKIFT----------RMSSRESVSSGQSAF 92 (213)
T ss_pred ecCCCceEEEEECCCCCChHHHHHHHHHHHHHH-hCCCeeEcCCcEEeeeeeeee----------eeCCccChhhccchH
Confidence 4444 6899999999999999999983 332 3343 2233332110 0111000 00011
Q ss_pred hhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHH--------HHHHhc---CCEEEEEEcChhHHHHhc
Q 005344 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAA--------STIAQR---GVQLVGTAHGMTIDNIVK 337 (701)
Q Consensus 280 ~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~--------~~l~e~---GvtVIiTTHd~~l~~~l~ 337 (701)
.-+-+++.++++++..|.++|+|||++++|+... +.+.+. +.++|++||+.+++..+.
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 1345788889899999999999999999998542 222343 358999999999887654
No 424
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.22 E-value=3.9e-11 Score=118.47 Aligned_cols=120 Identities=22% Similarity=0.329 Sum_probs=80.8
Q ss_pred ceeccccccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCC-Cchhhhcc--CCChhHHH
Q 005344 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSG-IGRARRMQ--VPNVNMQH 284 (701)
Q Consensus 208 ~~L~dlI~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~-ig~~rr~~--v~s~G~qQ 284 (701)
..|+..+..|++++|+||||||||||+++|+++++++.| ++.+++..|+.. ++.. ++.....+ ........
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~--~i~ied~~E~~~----~~~~~~~~~~~~~~~~~~~~~~~ 89 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDER--IITIEDTAELQL----PHPNWVRLVTRPGNVEGSGEVTM 89 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCC--EEEECCccccCC----CCCCEEEEEEecCCCCCCCccCH
Confidence 345555889999999999999999999999999987654 467777666532 1111 11000000 01112333
Q ss_pred HHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCE-EEEEEcChhHHH
Q 005344 285 SVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQ-LVGTAHGMTIDN 334 (701)
Q Consensus 285 RV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~Gvt-VIiTTHd~~l~~ 334 (701)
.-++..++.++||+|+++|.... ++.+.......|.. ++.|.|..+..+
T Consensus 90 ~~~l~~~lR~~pd~i~igEir~~-ea~~~~~a~~tGh~g~~~T~Ha~s~~~ 139 (186)
T cd01130 90 ADLLRSALRMRPDRIIVGEVRGG-EALDLLQAMNTGHPGGMTTIHANSAEE 139 (186)
T ss_pred HHHHHHHhccCCCEEEEEccCcH-HHHHHHHHHhcCCCCceeeecCCCHHH
Confidence 45667788899999999999965 34444445688888 888889776544
No 425
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1e-11 Score=135.63 Aligned_cols=168 Identities=19% Similarity=0.237 Sum_probs=111.0
Q ss_pred ccchhhhhccc-eEEEEeEEEEECcccccccceecc--c-cccCCEEEEEcCCCCcHHHHHHHHHhc-CCCCCCcEEEEE
Q 005344 178 SLHRISAIRNR-KMQVIGLTCRVGRAVAGSAEIICD--L-VEGGGSILVIGPPGVGKTTLIREIARM-LADDHMKRVVIV 252 (701)
Q Consensus 178 tghRIs~ir~~-~IeI~nLs~rygr~v~G~~~~L~d--l-I~~GeiilIIGPNGSGKTTLLR~IaGl-Lsp~~GkrViiV 252 (701)
++.+...+.+. -|.|.+.+++... ..++.+ + |-.|.-++|+||||-||||||+.|+.- ++.-...-|.+.
T Consensus 252 s~~q~A~lEna~DIKiEnF~ISA~G-----k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlC 326 (807)
T KOG0066|consen 252 SGTQLAQLENAMDIKIENFDISAQG-----KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLC 326 (807)
T ss_pred hhhHHHHHhhcccceeeeeeeeccc-----ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEee
Confidence 33444455543 3677788776542 234433 3 778999999999999999999999863 221111222222
Q ss_pred ------cCCcccc---------------------------------------------cCCCCCC-----CCCchh----
Q 005344 253 ------DTSNEIG---------------------------------------------GDGDVPH-----SGIGRA---- 272 (701)
Q Consensus 253 ------d~~~EIa---------------------------------------------~~~~ip~-----~~ig~~---- 272 (701)
+...-|. ....-+. .++|-.
T Consensus 327 EQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ 406 (807)
T KOG0066|consen 327 EQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQ 406 (807)
T ss_pred eeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHh
Confidence 2221110 0000000 012211
Q ss_pred -hhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHH----HHHhcCCEEEEEEcChhHHHHhcCcEEEEeCCe
Q 005344 273 -RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAS----TIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 273 -rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~----~l~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~ 347 (701)
+...-.++|.+.||.+||||.+.|-+|+|||||+.||..+.. .+.-...|+++++||..+.+.+|+.++-+...+
T Consensus 407 ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qk 486 (807)
T KOG0066|consen 407 ERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQK 486 (807)
T ss_pred cCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhh
Confidence 112234779999999999999999999999999999998873 334456899999999999999999999888777
Q ss_pred EEE
Q 005344 348 IES 350 (701)
Q Consensus 348 I~~ 350 (701)
+.+
T Consensus 487 Lhy 489 (807)
T KOG0066|consen 487 LHY 489 (807)
T ss_pred hhh
Confidence 643
No 426
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.21 E-value=1.8e-10 Score=125.84 Aligned_cols=137 Identities=24% Similarity=0.424 Sum_probs=99.0
Q ss_pred ceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcC--------CCCCCcEEEEEcCCcccccC---------------
Q 005344 208 EIICDL---VEGGGSILVIGPPGVGKTTLIREIARML--------ADDHMKRVVIVDTSNEIGGD--------------- 261 (701)
Q Consensus 208 ~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlL--------sp~~GkrViiVd~~~EIa~~--------------- 261 (701)
.+++|+ +++|+.++|+|++|+||||+||+|+|.. .|++|+ +-+.... ++.+
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~--v~vp~nt-~~a~iPge~Ep~f~~~til 473 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGK--VEVPKNT-VSALIPGEYEPEFGEVTIL 473 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCc--eeccccc-hhhccCcccccccCchhHH
Confidence 467777 8999999999999999999999999954 456665 3333221 1110
Q ss_pred -------CCC-------CCCCCchh----hhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------
Q 005344 262 -------GDV-------PHSGIGRA----RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI------- 316 (701)
Q Consensus 262 -------~~i-------p~~~ig~~----rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l------- 316 (701)
+++ ...+++.+ +.+.-++.|++.|+-||.+++..|.++++||-.+.||..++..+
T Consensus 474 ehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisel 553 (593)
T COG2401 474 EHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISEL 553 (593)
T ss_pred HHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHH
Confidence 000 00111111 12233567999999999999999999999999999999987433
Q ss_pred -HhcCCEEEEEEcChhHHHHh-cCcEEEEeCCe
Q 005344 317 -AQRGVQLVGTAHGMTIDNIV-KNPSLQILVGG 347 (701)
Q Consensus 317 -~e~GvtVIiTTHd~~l~~~l-~drvlvl~~G~ 347 (701)
++.|.|++++||..++.+.+ -|.++...-|.
T Consensus 554 aRe~giTlivvThrpEv~~AL~PD~li~vgYg~ 586 (593)
T COG2401 554 AREAGITLIVVTHRPEVGNALRPDTLILVGYGK 586 (593)
T ss_pred HHHhCCeEEEEecCHHHHhccCCceeEEeeccc
Confidence 46799999999999999888 46665555454
No 427
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=1.6e-10 Score=121.03 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=58.3
Q ss_pred CChhHHHHHHHHHHHcc----CCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCe
Q 005344 278 PNVNMQHSVMIEAVENH----MPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~~----~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~ 347 (701)
.++|++|+++++++++. .|+++|+|||+++||+.....+ ...+.++|++||+.... .++|+++.+..|+
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~l~~~~ 249 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFLVEKEV 249 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEEEEEec
Confidence 46799999999986554 9999999999999999988654 23478999999999865 6899999888764
No 428
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.19 E-value=8.5e-11 Score=116.12 Aligned_cols=108 Identities=14% Similarity=0.244 Sum_probs=64.0
Q ss_pred EEEEcCCCCcHHHHHHHHH-hcCCCCCCc-------EEEEEcCCcccccCCCCCCCCCchhhhcc--CCChhHHHHHHHH
Q 005344 220 ILVIGPPGVGKTTLIREIA-RMLADDHMK-------RVVIVDTSNEIGGDGDVPHSGIGRARRMQ--VPNVNMQHSVMIE 289 (701)
Q Consensus 220 ilIIGPNGSGKTTLLR~Ia-GlLsp~~Gk-------rViiVd~~~EIa~~~~ip~~~ig~~rr~~--v~s~G~qQRV~IA 289 (701)
++|.||||+|||||||.|+ ..+-...|. ++.+++.-- ...+........ -.+.++++ ++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il--------~~~~~~d~~~~~~s~fs~~~~~---l~ 70 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIF--------TRIGASDSLAQGLSTFMVEMKE---TA 70 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEE--------EEeCCCCchhccccHHHHHHHH---HH
Confidence 6899999999999999998 322222232 222222110 011111100111 11234444 44
Q ss_pred HHHcc--CCCEEEEcCCCCcccHHHHHH--------HHh-cCCEEEEEEcChhHHHHhcCc
Q 005344 290 AVENH--MPETIIIDEIGTELEALAAST--------IAQ-RGVQLVGTAHGMTIDNIVKNP 339 (701)
Q Consensus 290 rAL~~--~PdVIILDEPtsgLD~~a~~~--------l~e-~GvtVIiTTHd~~l~~~l~dr 339 (701)
+++.. +|+++|+|||++++|+..... +.+ .|.++|++||+.++.. +++.
T Consensus 71 ~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~-~~~~ 130 (185)
T smart00534 71 NILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTK-LADE 130 (185)
T ss_pred HHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHH-Hhhc
Confidence 44444 999999999999999985422 234 4899999999997554 5543
No 429
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.17 E-value=1.5e-10 Score=117.64 Aligned_cols=125 Identities=17% Similarity=0.202 Sum_probs=71.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCC-CCCcEEEEEcC-CcccccC-CCCCCCCCchhhhccC-CChhHHHHHHHHHHH-
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLAD-DHMKRVVIVDT-SNEIGGD-GDVPHSGIGRARRMQV-PNVNMQHSVMIEAVE- 292 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp-~~GkrViiVd~-~~EIa~~-~~ip~~~ig~~rr~~v-~s~G~qQRV~IArAL- 292 (701)
++++|+||||+|||||||.|++..-. ..|. +++. ...+... ..+++... ...+.. .+.-+.....++.++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~---~vp~~~~~i~~~~~i~~~~~~--~~~ls~g~s~f~~e~~~l~~~l~ 105 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGS---FVPASKAEIGVVDRIFTRIGA--SDDLAGGRSTFMVEMVETANILN 105 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCC---eeccccceecceeeEeccCCc--hhhhccCcchHHHHHHHHHHHHH
Confidence 79999999999999999999864311 1121 1211 1111111 01111111 001100 111122233444444
Q ss_pred -ccCCCEEEEcCC---CCcccHHHH-----HHHHhc-CCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 293 -NHMPETIIIDEI---GTELEALAA-----STIAQR-GVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 293 -~~~PdVIILDEP---tsgLD~~a~-----~~l~e~-GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+.+|.++|+||| |+++|..+. +.+.+. +.++|++||+.++. .+++.+..+..|.+
T Consensus 106 ~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~-~l~~~~~~v~~~~~ 170 (216)
T cd03284 106 NATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELT-ELEGKLPRVKNFHV 170 (216)
T ss_pred hCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHH-HHhhcCCCeEEEEE
Confidence 469999999999 888897653 233555 89999999997654 46666555556665
No 430
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=2.8e-10 Score=121.97 Aligned_cols=209 Identities=20% Similarity=0.256 Sum_probs=132.9
Q ss_pred hccCCCCeEEEEEeC-CCceEEecCCCceeeccccCCHHHHHHHHHHHhccccc----CCCccc---cccchhhhhccce
Q 005344 118 MHRELGDLIEVVMDL-GRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDD----NRSGID---RSLHRISAIRNRK 189 (701)
Q Consensus 118 ~~~~~~~l~EI~L~~-GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs~d----~R~Gi~---rtghRIs~ir~~~ 189 (701)
....++.++||.++. |..++..-..+.+.-.....+.+++..++.+++.++.. .++-+. +.|+|+.....+.
T Consensus 20 p~l~D~~iedI~~n~~~~v~v~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~gk~is~~~Pi~~~~lp~g~Ri~i~~~~~ 99 (312)
T COG0630 20 PLLRDPRIEDIVVNGPGPVYVEHKGGGSYVTNIPFLTEEELDSLAIRLAQRSGKPISEANPILDATLPDGSRIQIVLGPE 99 (312)
T ss_pred hhhcCCCceEEEecCCceEEEEEcCCcceeccCccCCHHHHHHHHHHHHHHcCCCCCCCCCceEeEcCCCcEEEEEeCCC
Confidence 345678899999997 62333322222332334457889999999999887742 233332 4578886433333
Q ss_pred EEEEe--EEEEECccc---------ccc-----cceeccccccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEc
Q 005344 190 MQVIG--LTCRVGRAV---------AGS-----AEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVD 253 (701)
Q Consensus 190 IeI~n--Ls~rygr~v---------~G~-----~~~L~dlI~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd 253 (701)
....+ +++|-.... .|. ...|+..++.+..+.|+|++||||||+|+++..++++. .+++.++
T Consensus 100 v~~~~~s~~IRk~~~~~~t~~~l~~~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~--~rivtIE 177 (312)
T COG0630 100 VSPNGSSFTIRKFSDEPITPEDLIEYGTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPE--ERIVTIE 177 (312)
T ss_pred cCCCCCcEEEEcCCCCCCCHHHHhhcCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCch--hcEEEEe
Confidence 33332 333222111 011 11233448899999999999999999999999999987 5678898
Q ss_pred CCcccccCCCCCCCCCch-hhhccC-CChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChh
Q 005344 254 TSNEIGGDGDVPHSGIGR-ARRMQV-PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331 (701)
Q Consensus 254 ~~~EIa~~~~ip~~~ig~-~rr~~v-~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~ 331 (701)
+..|+.. ||.++-. .-+-.. .+....-.-.+.+++.++||.||++|.. +-++...-.....|+..+.|.|..+
T Consensus 178 dt~E~~~----~~~n~~~l~~r~~~~~~~~v~~~dll~aalR~rPd~IivgEvr-g~e~~~~~~a~~tGh~~isT~ha~s 252 (312)
T COG0630 178 DTPELKL----PHENWVQLVTREGESGSSEVSLEDLLRAALRQRPDYIIVGELR-GREAFVLFQAMQTGHGTISTIHADS 252 (312)
T ss_pred ccccccC----CCCCEEEEEecCCCCCccccCHHHHHHHHHhcCCCeEEEeeee-cHHHHHHHHHHhcCCCceeEEecCC
Confidence 8888743 3322211 000000 0223445677889999999999999998 4455555566788888888989765
Q ss_pred HH
Q 005344 332 ID 333 (701)
Q Consensus 332 l~ 333 (701)
..
T Consensus 253 ~~ 254 (312)
T COG0630 253 PE 254 (312)
T ss_pred HH
Confidence 43
No 431
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.13 E-value=5.9e-10 Score=124.04 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=123.4
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccc-----
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEI----- 258 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EI----- 258 (701)
...+++.+|++.-.+ ....++++ +..||+++|.|=.|-|-+.|+.+|+|+.++..|+ +.+++..-+
T Consensus 255 ~~vL~V~~L~v~~~~----~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~--I~l~G~~v~~~~~~ 328 (501)
T COG3845 255 EVVLEVEDLSVKDRR----GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGR--ILLNGKDVLGRLSP 328 (501)
T ss_pred CeEEEEeeeEeecCC----CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCce--EEECCEeccccCCH
Confidence 456889999987653 24678888 8999999999999999999999999999877777 566554321
Q ss_pred -----ccCCCCCC---------------------------CCCc---h----------hhhccC-----------CChhH
Q 005344 259 -----GGDGDVPH---------------------------SGIG---R----------ARRMQV-----------PNVNM 282 (701)
Q Consensus 259 -----a~~~~ip~---------------------------~~ig---~----------~rr~~v-----------~s~G~ 282 (701)
.+.+.+|. ...+ . .+.+++ +|+|.
T Consensus 329 ~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGN 408 (501)
T COG3845 329 RERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGN 408 (501)
T ss_pred HHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcc
Confidence 01111111 0000 0 012222 46799
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEE
Q 005344 283 QHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIES 350 (701)
Q Consensus 283 qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~ 350 (701)
||++.+||=+..+|++||+.+||.|||..+.+.+ ++.|..|++++-+++++..+||++.+|..|++..
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 9999999999999999999999999999998554 6789999999999999999999999999999943
No 432
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=99.04 E-value=1.1e-09 Score=114.58 Aligned_cols=113 Identities=24% Similarity=0.312 Sum_probs=83.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHcc
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
..+++++|.|++||||||+++.+...+.+ .+.+|+.+++..|+...+ +.+..+. ...|.-..-++..+|.+
T Consensus 78 ~~~GlilisG~tGSGKTT~l~all~~i~~-~~~~iitiEdp~E~~~~~-~~q~~v~-------~~~~~~~~~~l~~~lR~ 148 (264)
T cd01129 78 KPHGIILVTGPTGSGKTTTLYSALSELNT-PEKNIITVEDPVEYQIPG-INQVQVN-------EKAGLTFARGLRAILRQ 148 (264)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhhhCC-CCCeEEEECCCceecCCC-ceEEEeC-------CcCCcCHHHHHHHHhcc
Confidence 35679999999999999999999877754 456789999887764321 1111111 12234456677889999
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChhHHHHh
Q 005344 295 MPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIV 336 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~l~~~l 336 (701)
+||+|+++|+.....+.+...++..|..++.|.|..+..+.+
T Consensus 149 ~PD~i~vgEiR~~e~a~~~~~aa~tGh~v~tTlHa~~~~~ai 190 (264)
T cd01129 149 DPDIIMVGEIRDAETAEIAVQAALTGHLVLSTLHTNDAPGAI 190 (264)
T ss_pred CCCEEEeccCCCHHHHHHHHHHHHcCCcEEEEeccCCHHHHH
Confidence 999999999997766666677788999999999987765543
No 433
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=1.5e-09 Score=113.50 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=56.5
Q ss_pred CChhHHHHHHHHHHHc---------cCCCEEEEcCCCCcccHHHHHHH----HhcCCEEEEEEcChhHHHHhc---CcEE
Q 005344 278 PNVNMQHSVMIEAVEN---------HMPETIIIDEIGTELEALAASTI----AQRGVQLVGTAHGMTIDNIVK---NPSL 341 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~---------~~PdVIILDEPtsgLD~~a~~~l----~e~GvtVIiTTHd~~l~~~l~---drvl 341 (701)
.+.|++++++++++++ .+|+++++|||+++||+..+..+ .+.+ ++++++|+......+| ..++
T Consensus 184 lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~~~~~~~~~~~~~i~ 262 (270)
T cd03242 184 GSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDLADFDALWLRRAQIF 262 (270)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCchhccchhccCccEE
Confidence 4679999999999975 69999999999999999998655 3334 6788888777777776 5678
Q ss_pred EEeCCeE
Q 005344 342 QILVGGI 348 (701)
Q Consensus 342 vl~~G~I 348 (701)
.+..|++
T Consensus 263 ~l~~g~i 269 (270)
T cd03242 263 RVDAGTL 269 (270)
T ss_pred EEeCcEE
Confidence 8888875
No 434
>PRK13695 putative NTPase; Provisional
Probab=99.01 E-value=2.1e-09 Score=104.64 Aligned_cols=132 Identities=23% Similarity=0.221 Sum_probs=81.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEE-EEcCCc-cc---ccC----------CCCCCCCC-ch---hhhccCCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVV-IVDTSN-EI---GGD----------GDVPHSGI-GR---ARRMQVPN 279 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp~~GkrVi-iVd~~~-EI---a~~----------~~ip~~~i-g~---~rr~~v~s 279 (701)
.++|+|+||||||||++.|++.+.+ .|..+. ++.+.. +. .+. ..+.+.+. +. ......++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ls 80 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLE 80 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehH
Confidence 4789999999999999999988765 355443 332210 00 000 00001111 00 01111234
Q ss_pred hhHHHHHHHHHHHccCCCEEEEcCCCC--cccHHHH---HHHHhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEe
Q 005344 280 VNMQHSVMIEAVENHMPETIIIDEIGT--ELEALAA---STIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVT 352 (701)
Q Consensus 280 ~G~qQRV~IArAL~~~PdVIILDEPts--gLD~~a~---~~l~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~ 352 (701)
.+++....+......+|++||+|||+. .+|.... ..+.+.|.++|+++|+. ....+++++..+.+|+|..++
T Consensus 81 gle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~-~~~~~~~~i~~~~~~~i~~~~ 157 (174)
T PRK13695 81 DLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR-SVHPFVQEIKSRPGGRVYELT 157 (174)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch-hhHHHHHHHhccCCcEEEEEc
Confidence 456666666655667999999999653 4454333 33457899999999984 445778899999999986653
No 435
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.97 E-value=3.9e-09 Score=108.22 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=68.9
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHh-cCCCCCCcEEEEEcC-CcccccCCCCCCCCCchhhhcc-CCCh--hHHHHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIAR-MLADDHMKRVVIVDT-SNEIGGDGDVPHSGIGRARRMQ-VPNV--NMQHSVMI 288 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaG-lLsp~~GkrViiVd~-~~EIa~~~~ip~~~ig~~rr~~-v~s~--G~qQRV~I 288 (701)
+..|++++|+||||+||||+++.|++ .+.+..|. ++.. ...+.....+ ...++..+.+. -.|. .+-+++.-
T Consensus 28 ~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~---~v~a~~~~~~~~~~i-~~~~~~~d~~~~~~StF~~e~~~~~~ 103 (222)
T cd03287 28 AEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGS---FVPASSATLSIFDSV-LTRMGASDSIQHGMSTFMVELSETSH 103 (222)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC---EEEcCceEEeccceE-EEEecCccccccccchHHHHHHHHHH
Confidence 56789999999999999999999999 55556665 2222 1122111110 00111111110 0111 11222222
Q ss_pred HHHHccCCCEEEEcCCCCcccHHHH--------HHHHhc-CCEEEEEEcChhHHHHh
Q 005344 289 EAVENHMPETIIIDEIGTELEALAA--------STIAQR-GVQLVGTAHGMTIDNIV 336 (701)
Q Consensus 289 ArAL~~~PdVIILDEPtsgLD~~a~--------~~l~e~-GvtVIiTTHd~~l~~~l 336 (701)
..-.+..+.++|+|||++|.++... +.+.+. +.++|++||+.++....
T Consensus 104 il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 104 ILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 2233468999999999776653332 233555 89999999999887644
No 436
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.93 E-value=1.3e-09 Score=129.35 Aligned_cols=117 Identities=16% Similarity=0.228 Sum_probs=76.4
Q ss_pred cccC-CEEEEEcCCCCcHHHHHHHHHhc-CCCCCCcEEEEEcCC--cccccCCCCCCCCCchh----hhccCCChhHHHH
Q 005344 214 VEGG-GSILVIGPPGVGKTTLIREIARM-LADDHMKRVVIVDTS--NEIGGDGDVPHSGIGRA----RRMQVPNVNMQHS 285 (701)
Q Consensus 214 I~~G-eiilIIGPNGSGKTTLLR~IaGl-Lsp~~GkrViiVd~~--~EIa~~~~ip~~~ig~~----rr~~v~s~G~qQR 285 (701)
+..+ +.++|+||||+|||||||.|++. +-+..|- +|+.. ..+.....+ ...++.. ..+...+.+|++.
T Consensus 318 l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~---~Vpa~~~~~~~~~d~i-~~~i~~~~si~~~LStfS~~m~~~ 393 (771)
T TIGR01069 318 LKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI---PIPANEHSEIPYFEEI-FADIGDEQSIEQNLSTFSGHMKNI 393 (771)
T ss_pred eCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---CccCCccccccchhhe-eeecChHhHHhhhhhHHHHHHHHH
Confidence 5555 79999999999999999999998 3334442 22221 112111000 0111111 1122235688887
Q ss_pred HHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHH
Q 005344 286 VMIEAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNI 335 (701)
Q Consensus 286 V~IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~ 335 (701)
+.|...+ ..|.++|+|||++|+|+.....+ .+.|.++|+|||+.++...
T Consensus 394 ~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 394 SAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred HHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 7766544 68999999999999998876433 4569999999999887543
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.93 E-value=6e-09 Score=123.85 Aligned_cols=122 Identities=16% Similarity=0.249 Sum_probs=78.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcC-CCCCCcEEEEEcCC--cccccCCCCCCCCCchh----hhccCCChhHHHHHHHH
Q 005344 217 GGSILVIGPPGVGKTTLIREIARML-ADDHMKRVVIVDTS--NEIGGDGDVPHSGIGRA----RRMQVPNVNMQHSVMIE 289 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlL-sp~~GkrViiVd~~--~EIa~~~~ip~~~ig~~----rr~~v~s~G~qQRV~IA 289 (701)
+.+++|.|||++||||+||.++... -...|- +|+-. ..+.....+ ...+|.. ......+.+|++++.|+
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~---~vpa~~~~~i~~~~~i-~~~ig~~~si~~~lStfS~~m~~~~~Il 402 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGL---PIPANEPSEIPVFKEI-FADIGDEQSIEQSLSTFSGHMTNIVRIL 402 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCC---CcccCCCccccccceE-EEecCCccchhhchhHHHHHHHHHHHHH
Confidence 4688999999999999999996441 111221 22221 111111000 0111211 11222356899988888
Q ss_pred HHHccCCCEEEEcCCCCcccHHHHHH--------HHhcCCEEEEEEcChhHHHHhcCcEEEE
Q 005344 290 AVENHMPETIIIDEIGTELEALAAST--------IAQRGVQLVGTAHGMTIDNIVKNPSLQI 343 (701)
Q Consensus 290 rAL~~~PdVIILDEPtsgLD~~a~~~--------l~e~GvtVIiTTHd~~l~~~l~drvlvl 343 (701)
+++ ..|.++|+|||++|+|+..... +.+.|.++|+|||+.++....++...+.
T Consensus 403 ~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~ 463 (782)
T PRK00409 403 EKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVE 463 (782)
T ss_pred HhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeE
Confidence 776 7899999999999999876532 2467999999999999888877755443
No 438
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=7.4e-09 Score=108.16 Aligned_cols=202 Identities=16% Similarity=0.248 Sum_probs=138.5
Q ss_pred EEEEEeCCCceEEecCCCceeeccccCCHHHHHHHHHHH------hcccccCCCccc---c--ccchhhhhccce---EE
Q 005344 126 IEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKV------GDFSDDNRSGID---R--SLHRISAIRNRK---MQ 191 (701)
Q Consensus 126 ~EI~L~~GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I------~~fs~d~R~Gi~---r--tghRIs~ir~~~---Ie 191 (701)
..+.+-.|-||..+..+....+.+.++|.++...++..+ ..|...+...|. + +-+|++++-.+. +-
T Consensus 20 SDlfIt~g~Ppsmkv~g~~tpi~q~pLt~eq~~~i~~~iM~~~q~~eF~~~~EcNfai~~~~~gRfRvnAf~qr~~~g~V 99 (375)
T COG5008 20 SDLFITAGFPPSMKVDGKLTPITQEPLTGEQTMAIAFSIMSAKQREEFEETHECNFAISARDIGRFRVNAFYQRGLAGLV 99 (375)
T ss_pred cceEEEcCCCcceeecCceeecCCCCCCHHHHHHHHHHHhhHHHHHHHHhcccceEEEEcCCCceEEeehhhhcCcchhh
Confidence 346778899999998888888888999999988877766 345554444442 2 236677654432 12
Q ss_pred EEeEEEEECccc-ccccceeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCC
Q 005344 192 VIGLTCRVGRAV-AGSAEIICDL-VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGI 269 (701)
Q Consensus 192 I~nLs~rygr~v-~G~~~~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~i 269 (701)
+.-++-++...- .+-.++|+++ +.+.+.+.|+|++||||||.|-.+.|.-...+--+|+.|++.-|.... ++..+
T Consensus 100 lRrI~~~IPt~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIEDPIEfih~---h~~CI 176 (375)
T COG5008 100 LRRIETKIPTFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIEDPIEFIHK---HKRCI 176 (375)
T ss_pred hhhhhccCCcHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCCCceEEecChHHHHhc---cccee
Confidence 333333333211 1334678888 888889999999999999999999998866554457777776554211 11111
Q ss_pred chhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChhH
Q 005344 270 GRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTI 332 (701)
Q Consensus 270 g~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~l 332 (701)
--.+..++. ..--.+++.-+|.+.||||++.|+.+-..-.-+..+++.|.-+++|.|..+.
T Consensus 177 vTQREvGvD--Tesw~~AlkNtlRQapDvI~IGEvRsretMeyAi~fAeTGHLcmaTLHAN~a 237 (375)
T COG5008 177 VTQREVGVD--TESWEVALKNTLRQAPDVILIGEVRSRETMEYAIQFAETGHLCMATLHANNA 237 (375)
T ss_pred EEeeeeccc--hHHHHHHHHHHHhcCCCeEEEeecccHhHHHHHHHHHhcCceEEEEeccCCc
Confidence 111111121 2344688889999999999999999876666677789999999999998753
No 439
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.87 E-value=1.9e-08 Score=89.05 Aligned_cols=111 Identities=25% Similarity=0.378 Sum_probs=70.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~P 296 (701)
+.+++|+||+||||||+++.|+..+.... ..+.+++............. .................+..+..+....|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 57899999999999999999999987553 33566655422111000000 00000011123345666788888888889
Q ss_pred CEEEEcCCCCcccHHHHHHH-------------HhcCCEEEEEEcC
Q 005344 297 ETIIIDEIGTELEALAASTI-------------AQRGVQLVGTAHG 329 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l-------------~e~GvtVIiTTHd 329 (701)
++|++||+..-.+....... ...+..+|+++|.
T Consensus 80 ~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 80 DVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 99999999987666654321 3457888888884
No 440
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.85 E-value=6.1e-09 Score=114.37 Aligned_cols=129 Identities=19% Similarity=0.173 Sum_probs=94.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----EEEEEcCCcc--ccc------------CCCCCCC--------C
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMK-----RVVIVDTSNE--IGG------------DGDVPHS--------G 268 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-----rViiVd~~~E--Ia~------------~~~ip~~--------~ 268 (701)
..+++..+|.||.|||||+++++|.++|+.|. .|.+..+.-. ..+ ...-|++ .
T Consensus 366 dSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ 445 (592)
T KOG0063|consen 366 DSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQ 445 (592)
T ss_pred CceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhh
Confidence 34689999999999999999999999998774 2334443210 000 0000110 0
Q ss_pred Cch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHH--------HHhcCCEEEEEEcChhHHHHhcC
Q 005344 269 IGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAST--------IAQRGVQLVGTAHGMTIDNIVKN 338 (701)
Q Consensus 269 ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~--------l~e~GvtVIiTTHd~~l~~~l~d 338 (701)
+.. ...++-.++|++|||+++.++-...++.++|||..-||.+.+.. +...+.|..++-||.-.+..++|
T Consensus 446 ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYlad 525 (592)
T KOG0063|consen 446 IENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLAD 525 (592)
T ss_pred HHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcc
Confidence 000 11234468899999999999999999999999999999988733 35678999999999999999999
Q ss_pred cEEEEe
Q 005344 339 PSLQIL 344 (701)
Q Consensus 339 rvlvl~ 344 (701)
++++..
T Consensus 526 rvivf~ 531 (592)
T KOG0063|consen 526 RVIVFE 531 (592)
T ss_pred eeEEEe
Confidence 998875
No 441
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.84 E-value=5.3e-09 Score=101.37 Aligned_cols=125 Identities=16% Similarity=0.126 Sum_probs=74.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccc----cC--CCCCCC---CCchh----hhccCCChhHHH-
Q 005344 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIG----GD--GDVPHS---GIGRA----RRMQVPNVNMQH- 284 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa----~~--~~ip~~---~ig~~----rr~~v~s~G~qQ- 284 (701)
+++|.||||+|||||.-.++-... ..|.++.|+....... .+ -+++.. ..+.. ......+.++++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 478999999999999887654432 3467777775431110 00 001100 00000 001112445555
Q ss_pred -----HHHHHHHHccCCCEEEEcCCCCccc---HHHH-------HHHHhcCCEEEEEEcChhH---------HHHhcCcE
Q 005344 285 -----SVMIEAVENHMPETIIIDEIGTELE---ALAA-------STIAQRGVQLVGTAHGMTI---------DNIVKNPS 340 (701)
Q Consensus 285 -----RV~IArAL~~~PdVIILDEPtsgLD---~~a~-------~~l~e~GvtVIiTTHd~~l---------~~~l~drv 340 (701)
..+...+...+|++||+|||+..+| .... ..+++.|+++|+++|.... +..++|.+
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~i 159 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGV 159 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEE
Confidence 5555666778999999999999888 4333 2335679999999998764 44555555
Q ss_pred EEEe
Q 005344 341 LQIL 344 (701)
Q Consensus 341 lvl~ 344 (701)
+.+.
T Consensus 160 i~l~ 163 (187)
T cd01124 160 IRLR 163 (187)
T ss_pred EEEE
Confidence 5443
No 442
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.84 E-value=1.2e-08 Score=94.68 Aligned_cols=114 Identities=27% Similarity=0.261 Sum_probs=70.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCC----CCCCC-CCchh----hhccCCChhHHHHHHHH
Q 005344 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDG----DVPHS-GIGRA----RRMQVPNVNMQHSVMIE 289 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~----~ip~~-~ig~~----rr~~v~s~G~qQRV~IA 289 (701)
+++|.|+||+|||||+..+++.... .|..|++++......... ..... ..... ............+.+.+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 4789999999999999999999876 466677777643221000 00000 00000 00111223344566778
Q ss_pred HHHccCCCEEEEcCCCCcccH----------HHHHHH-------HhcCCEEEEEEcChhHH
Q 005344 290 AVENHMPETIIIDEIGTELEA----------LAASTI-------AQRGVQLVGTAHGMTID 333 (701)
Q Consensus 290 rAL~~~PdVIILDEPtsgLD~----------~a~~~l-------~e~GvtVIiTTHd~~l~ 333 (701)
.+...+|++||+||++.-++. .....+ .+.|+++|+++|.....
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 888899999999999954333 222222 34699999999976544
No 443
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=98.83 E-value=1.7e-08 Score=114.35 Aligned_cols=110 Identities=25% Similarity=0.363 Sum_probs=81.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccC-CChhHHHHHHHHHHHcc
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV-PNVNMQHSVMIEAVENH 294 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v-~s~G~qQRV~IArAL~~ 294 (701)
++++++|.||+||||||+|+.+...+... +.+|+.+++..|....+ +.+ .++ ...|.-..-++..+|.+
T Consensus 241 ~~GlilitGptGSGKTTtL~a~L~~l~~~-~~~iiTiEDpvE~~~~~-~~q--------~~v~~~~g~~f~~~lr~~LR~ 310 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNTP-ERNILTVEDPVEYQIEG-IGQ--------IQVNPKIGLTFAAGLRAILRQ 310 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHhccCCC-CCcEEEEcCCeeeecCC-Cce--------EEEccccCccHHHHHHHHHhc
Confidence 45689999999999999999887777543 56788888876653221 111 111 12345556778889999
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChhHHHH
Q 005344 295 MPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~l~~~ 335 (701)
+||+|+++|+.....+..+..++..|..|+.|.|..+....
T Consensus 311 dPDvI~vGEiRd~eta~~a~~aa~tGHlvlsTlHa~sa~~a 351 (486)
T TIGR02533 311 DPDIIMVGEIRDLETAQIAIQASLTGHLVLSTLHTNDAAGA 351 (486)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCcEEEEECCCCHHHH
Confidence 99999999999666666666778899999999998776543
No 444
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=98.81 E-value=9e-09 Score=113.53 Aligned_cols=204 Identities=20% Similarity=0.324 Sum_probs=126.2
Q ss_pred CCCeEEEEEeCCCceEEecC-CCce---eeccccCCHHHHHHHHHHHhcccccCCCcc---ccccchhhhhccceEEEE-
Q 005344 122 LGDLIEVVMDLGRKPLARFP-SGDW---VISEQIVKHEDLKHAISKVGDFSDDNRSGI---DRSLHRISAIRNRKMQVI- 193 (701)
Q Consensus 122 ~~~l~EI~L~~GR~p~~r~~-~~~~---~l~~~~vt~edl~~~i~~I~~fs~d~R~Gi---~rtghRIs~ir~~~IeI~- 193 (701)
.++.--++|..|-+|.+.-+ -|.| -+++++++++|++.+.+.|-........+| .+.|.-|-++||..+.|.
T Consensus 147 d~~TMSvHLKeg~~P~aK~GkpG~~k~v~l~d~pl~~~ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn~RIvIar 226 (604)
T COG1855 147 DEETMSVHLKEGVPPMAKKGKPGEWKLVRLSDKPLTREELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRNYRIVIAR 226 (604)
T ss_pred CCcceEEeeccCCCcccccCCCCcEEEEEcCCccCCHHHHHHHHHHHHHHHhhCcCceEEEccCCceEEEeccEEEEEec
Confidence 35677899999999999865 3443 367899999999999999864332221333 245555555666554432
Q ss_pred -----eEEEEECccc-------cccc-ceeccccccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccccc
Q 005344 194 -----GLTCRVGRAV-------AGSA-EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGG 260 (701)
Q Consensus 194 -----nLs~rygr~v-------~G~~-~~L~dlI~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~ 260 (701)
++.+..-|.+ .+.. .+.+.+.+..+-++|.||||+|||||..++|-.+.. .|+-|-.+.....+..
T Consensus 227 PPfSd~~EITavRPvvk~~ledY~L~dkl~eRL~eraeGILIAG~PGaGKsTFaqAlAefy~~-~GkiVKTmEsPRDl~v 305 (604)
T COG1855 227 PPFSDRWEITAVRPVVKLSLEDYGLSDKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYAS-QGKIVKTMESPRDLQV 305 (604)
T ss_pred CCCCCceEEEEEeeeEEechhhcCCCHHHHHHHHhhhcceEEecCCCCChhHHHHHHHHHHHh-cCcEEeeccCcccccC
Confidence 1111111110 0011 111222455789999999999999999999999874 5774444444333322
Q ss_pred CCCCCCCCCchhhhccCCChhHHHHHHHH-HHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChhHHHHhc
Q 005344 261 DGDVPHSGIGRARRMQVPNVNMQHSVMIE-AVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVK 337 (701)
Q Consensus 261 ~~~ip~~~ig~~rr~~v~s~G~qQRV~IA-rAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~l~~~l~ 337 (701)
...+.|.. ...+.|.. .+ ..|.-+||+-|.||...--|..--..++-.|+.++.+.|....++.+.
T Consensus 306 ~~eITQYs--------~l~g~me~---t~DiLLLvRPDYTIyDEmR~t~DF~vyaDmRLAGVGMVGVVHATrpIDAiQ 372 (604)
T COG1855 306 SPEITQYS--------PLEGDMEK---TADILLLVRPDYTIYDEMRKTEDFQVYADLRLAGVGMVGVVHATRPIDAIQ 372 (604)
T ss_pred Chhhhhcc--------cccCchhh---hccEEEEecCCceehhhhhcccceEEeeeeecccCceEeEEecCChhHHHH
Confidence 11111110 01111111 11 134579999999999998888777777888999999999876555443
No 445
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.78 E-value=2.4e-08 Score=112.05 Aligned_cols=111 Identities=25% Similarity=0.359 Sum_probs=85.2
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccC-CChhHHHHHHHHHHHc
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV-PNVNMQHSVMIEAVEN 293 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v-~s~G~qQRV~IArAL~ 293 (701)
.+.+++++.||+||||||+|..+...+... .++|+.+++.-|+...+ +. +.++ ...|+-.--++.+.|.
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~~-~~nI~TiEDPVE~~~~g-I~--------Q~qVN~k~gltfa~~LRa~LR 325 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNTP-ERNIITIEDPVEYQLPG-IN--------QVQVNPKIGLTFARALRAILR 325 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcCC-CceEEEeeCCeeeecCC-cc--------eeecccccCCCHHHHHHHHhc
Confidence 345799999999999999999999988643 46689999887764321 11 1222 2346666778889999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChhHHHH
Q 005344 294 HMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~l~~~ 335 (701)
++||||+++|+.....++.+-.++..|..|+.|.|..+....
T Consensus 326 qDPDvImVGEIRD~ETAeiavqAalTGHLVlSTlHtnda~~a 367 (500)
T COG2804 326 QDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTNDAPGA 367 (500)
T ss_pred cCCCeEEEeccCCHHHHHHHHHHHhcCCeEeeecccCchHHH
Confidence 999999999999666666666778899999999998776543
No 446
>cd02644 R3H_jag R3H domain found in proteins homologous to Bacillus subtilus Jag, which is associated with SpoIIIJ. SpoIIIJ is necessary for the third stage of sporulation. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=98.75 E-value=1.4e-08 Score=85.92 Aligned_cols=57 Identities=21% Similarity=0.170 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCCeeeecCCCChHHHHHHHHHHHHcC-CceeeccCCCCceeEEecC
Q 005344 599 EEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQ-LAAENSGTELNPRLQILPL 656 (701)
Q Consensus 599 ~e~~~ai~~~v~~~~~~vel~pr~~~i~~~q~~l~~~y~-l~~~~~g~~~~~r~~i~p~ 656 (701)
+-|+.|+++ |...|++|+|-|-++.-|+++|++++.|. |.++|+|+||+|+|.|+|.
T Consensus 10 ~~A~~~a~~-v~~tg~~~~l~PM~~~eRrivH~~~~~~~~l~T~S~G~~~~R~vvI~~~ 67 (67)
T cd02644 10 RLAERAAEK-VRRTGKPVKLEPMNAYERRIIHDALANDEDVETESEGEGPYRRVVISPK 67 (67)
T ss_pred HHHHHHHHH-HHHHCCeeEeCCCCHHHHHHHHHHHHhCCCceEEeecCCCCeEEEEEeC
Confidence 457888888 55579999999999999999999999999 9999999999999999984
No 447
>PRK10436 hypothetical protein; Provisional
Probab=98.75 E-value=4.4e-08 Score=110.30 Aligned_cols=110 Identities=25% Similarity=0.346 Sum_probs=82.7
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCC-ChhHHHHHHHHHHHc
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVP-NVNMQHSVMIEAVEN 293 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~-s~G~qQRV~IArAL~ 293 (701)
.++++++|.||+||||||+|..+...+... +++|+.+++..|+...+ +.+ .++. ..|.-..-+|..+|.
T Consensus 216 ~~~GliLvtGpTGSGKTTtL~a~l~~~~~~-~~~i~TiEDPvE~~l~g-i~Q--------~~v~~~~g~~f~~~lr~~LR 285 (462)
T PRK10436 216 QPQGLILVTGPTGSGKTVTLYSALQTLNTA-QINICSVEDPVEIPLAG-INQ--------TQIHPKAGLTFQRVLRALLR 285 (462)
T ss_pred hcCCeEEEECCCCCChHHHHHHHHHhhCCC-CCEEEEecCCccccCCC-cce--------EeeCCccCcCHHHHHHHHhc
Confidence 466799999999999999999888877543 57889999887763321 111 1121 224445677888999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChhHHH
Q 005344 294 HMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDN 334 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~l~~ 334 (701)
++||+|+++|+.....+..+-.++..|..|+.|.|..+...
T Consensus 286 ~dPDvI~vGEIRD~eta~~al~AA~TGHlVlsTlHa~~a~~ 326 (462)
T PRK10436 286 QDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTSE 326 (462)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHcCCcEEEeeccCChHH
Confidence 99999999999966656656667889999999999877654
No 448
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.73 E-value=6.3e-08 Score=99.46 Aligned_cols=127 Identities=20% Similarity=0.216 Sum_probs=70.8
Q ss_pred eEEEEeEEEEECcccccccceeccccccCCEEEEEcCCCCcHHHH-HHHHHhcCCCCCCcEEEEEcCCcccc-------c
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDLVEGGGSILVIGPPGVGKTTL-IREIARMLADDHMKRVVIVDTSNEIG-------G 260 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dlI~~GeiilIIGPNGSGKTTL-LR~IaGlLsp~~GkrViiVd~~~EIa-------~ 260 (701)
.+.+.+|++.++ +-+.+|++++|+|+|||||||| ++.+++.+.+ |.+++++....... .
T Consensus 7 ~~~~~~ld~~l~-----------ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e~~~~~~~~~~~~ 73 (230)
T PRK08533 7 ELSRDELHKRLG-----------GGIPAGSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSTQLTTTEFIKQMMS 73 (230)
T ss_pred EEEEeeeehhhC-----------CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHH
Confidence 445666666554 2267899999999999999999 6888887654 56677776432110 0
Q ss_pred CCC-C-CCCCCchhh--hc-cCCChhHHHHHHHHHHH----ccCCCEEEEcCCCCcc----cHHHHHH-------HHhcC
Q 005344 261 DGD-V-PHSGIGRAR--RM-QVPNVNMQHSVMIEAVE----NHMPETIIIDEIGTEL----EALAAST-------IAQRG 320 (701)
Q Consensus 261 ~~~-i-p~~~ig~~r--r~-~v~s~G~qQRV~IArAL----~~~PdVIILDEPtsgL----D~~a~~~-------l~e~G 320 (701)
.+. + +....+... .. ...+.+..++..+..++ ..+|+++++|||++.+ |+...+. +++.|
T Consensus 74 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g 153 (230)
T PRK08533 74 LGYDINKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLN 153 (230)
T ss_pred hCCchHHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCC
Confidence 000 0 000000000 00 01112222233333222 3479999999999988 6554432 24568
Q ss_pred CEEEEEEc
Q 005344 321 VQLVGTAH 328 (701)
Q Consensus 321 vtVIiTTH 328 (701)
.++++|+|
T Consensus 154 ~tvi~t~~ 161 (230)
T PRK08533 154 KVIILTAN 161 (230)
T ss_pred CEEEEEec
Confidence 87766544
No 449
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.70 E-value=4.9e-08 Score=99.93 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=68.2
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC-CCcEEEEEcCC-cccccCCCCCCCCCchhhhccC-CCh--hHHHHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADD-HMKRVVIVDTS-NEIGGDGDVPHSGIGRARRMQV-PNV--NMQHSVMI 288 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~-~GkrViiVd~~-~EIa~~~~ip~~~ig~~rr~~v-~s~--G~qQRV~I 288 (701)
..++++++|.||||+||||+++.++...--. .|- +|+-. ..+.....+ ...++..+.+.. .+. .+-+++.-
T Consensus 27 ~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~---~vpa~~~~i~~~~~i-~~~~~~~d~~~~~~StF~~e~~~~~~ 102 (218)
T cd03286 27 ATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM---DVPAKSMRLSLVDRI-FTRIGARDDIMKGESTFMVELSETAN 102 (218)
T ss_pred ecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC---ccCccccEeccccEE-EEecCcccccccCcchHHHHHHHHHH
Confidence 3467899999999999999999998863211 121 11111 011100000 000111111100 111 11222222
Q ss_pred HHHHccCCCEEEEcCCCCcccHHHHH--------HHHhc-CCEEEEEEcChhHHHHhc
Q 005344 289 EAVENHMPETIIIDEIGTELEALAAS--------TIAQR-GVQLVGTAHGMTIDNIVK 337 (701)
Q Consensus 289 ArAL~~~PdVIILDEPtsgLD~~a~~--------~l~e~-GvtVIiTTHd~~l~~~l~ 337 (701)
..-.+.+|.++++|||+.|.++.... .+.+. |.++|++||+.++...++
T Consensus 103 il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 103 ILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 22334789999999999888777642 33444 899999999999887765
No 450
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=98.69 E-value=6.8e-08 Score=111.24 Aligned_cols=111 Identities=23% Similarity=0.357 Sum_probs=82.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccC-CChhHHHHHHHHHHHc
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV-PNVNMQHSVMIEAVEN 293 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v-~s~G~qQRV~IArAL~ 293 (701)
.+..+++|.||+||||||+|..+...+... .++|+.+++..|....+ +.+ +++ .+.|.-..-++..+|.
T Consensus 314 ~~~Glilv~G~tGSGKTTtl~a~l~~~~~~-~~~i~tiEdpvE~~~~~-~~q--------~~v~~~~g~~~~~~l~~~LR 383 (564)
T TIGR02538 314 KPQGMVLVTGPTGSGKTVSLYTALNILNTE-EVNISTAEDPVEINLPG-INQ--------VNVNPKIGLTFAAALRSFLR 383 (564)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHhhCCC-CceEEEecCCceecCCC-ceE--------EEeccccCCCHHHHHHHHhc
Confidence 356799999999999999999998888543 56788888887764321 111 112 1234556677889999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChhHHHH
Q 005344 294 HMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNI 335 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~l~~~ 335 (701)
++||+|+++|+.....+..+-.++..|..|+.|.|..+....
T Consensus 384 ~dPDvI~vGEiRd~eta~~a~~aa~tGHlv~tTlHa~~a~~~ 425 (564)
T TIGR02538 384 QDPDIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPET 425 (564)
T ss_pred cCCCEEEeCCCCCHHHHHHHHHHHHcCCcEEEEeccCCHHHH
Confidence 999999999999555555556678899999999998776543
No 451
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=5e-08 Score=117.65 Aligned_cols=80 Identities=13% Similarity=0.100 Sum_probs=68.2
Q ss_pred ccCCChhHHHHHHHHHHHccCC--CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE--
Q 005344 275 MQVPNVNMQHSVMIEAVENHMP--ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI-- 343 (701)
Q Consensus 275 ~~v~s~G~qQRV~IArAL~~~P--dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl-- 343 (701)
..-+|+||+||+.||+++.++| +++||||||++||+.....+ ++.|.|||+++|+.+++. +||+++.|
T Consensus 485 ~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi~Lgp 563 (924)
T TIGR00630 485 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYVIDIGP 563 (924)
T ss_pred cCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEEEEecc
Confidence 3446889999999999999986 89999999999999988544 567999999999999986 89999999
Q ss_pred ----eCCeEEEEecCcHH
Q 005344 344 ----LVGGIESVTLGDEE 357 (701)
Q Consensus 344 ----~~G~I~~V~lgd~~ 357 (701)
..|+| +..+...
T Consensus 564 gaG~~~G~I--v~~g~~~ 579 (924)
T TIGR00630 564 GAGIHGGEV--VASGTPE 579 (924)
T ss_pred cccCCCCEE--eeccCHH
Confidence 78888 5455543
No 452
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.68 E-value=5.3e-08 Score=117.61 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=69.1
Q ss_pred hccCCChhHHHHHHHHHHHccCC--CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE-
Q 005344 274 RMQVPNVNMQHSVMIEAVENHMP--ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI- 343 (701)
Q Consensus 274 r~~v~s~G~qQRV~IArAL~~~P--dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl- 343 (701)
...-+|+|++||+.||++|.++| +++||||||++||+.....+ ++.|.|||+++|+.+++. .||+++.|
T Consensus 486 ~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi~Lg 564 (943)
T PRK00349 486 SAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYIVDIG 564 (943)
T ss_pred chhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEec
Confidence 34446889999999999999987 99999999999999998544 567999999999999886 69999999
Q ss_pred -----eCCeEEEEecCcHHH
Q 005344 344 -----LVGGIESVTLGDEEA 358 (701)
Q Consensus 344 -----~~G~I~~V~lgd~~a 358 (701)
..|++ +..++...
T Consensus 565 pgaG~~~G~i--v~~g~~~e 582 (943)
T PRK00349 565 PGAGVHGGEV--VASGTPEE 582 (943)
T ss_pred cccCCCCCEE--eeccCHHH
Confidence 88888 55555533
No 453
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.64 E-value=1.4e-07 Score=94.60 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=44.0
Q ss_pred CCChhHHHHHHHHHHHc----cCCCEEEEcCCCCcccHHHHHHH----Hhc--CCEEEEEEcChhHHHHhcCcE
Q 005344 277 VPNVNMQHSVMIEAVEN----HMPETIIIDEIGTELEALAASTI----AQR--GVQLVGTAHGMTIDNIVKNPS 340 (701)
Q Consensus 277 v~s~G~qQRV~IArAL~----~~PdVIILDEPtsgLD~~a~~~l----~e~--GvtVIiTTHd~~l~~~l~drv 340 (701)
..|+|++..++||..++ ....++|+||+.++||...+..+ .+. +.++|+|||........ +..
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a-~~~ 208 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA-DKL 208 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT--SEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 46889999999886654 35689999999999999998655 333 48999999998877654 443
No 454
>smart00393 R3H Putative single-stranded nucleic acids-binding domain.
Probab=98.63 E-value=1.1e-07 Score=82.43 Aligned_cols=64 Identities=31% Similarity=0.290 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCeeeecCCCChHHHHHHHHHHHHcCCceeeccCCCCceeEEec
Q 005344 592 LEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655 (701)
Q Consensus 592 ~~~~~al~e~~~ai~~~v~~~~~~vel~pr~~~i~~~q~~l~~~y~l~~~~~g~~~~~r~~i~p 655 (701)
....++|++....+.+.|.+.+++++|.|-+++-|++.|++++.|+|.++|+|.||+|+|.|+|
T Consensus 15 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~pm~~~~R~~iH~~a~~~~l~s~S~g~g~~R~vvv~~ 78 (79)
T smart00393 15 PRRREELIELELEIARFVKSTKESVELPPMNSYERKIVHELAEKYGLESESFGEGPKRRVVISK 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCeEEcCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCcEEEEEe
Confidence 3456789999999999999999999999999999999999999999999999999999999987
No 455
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.59 E-value=1.3e-07 Score=115.17 Aligned_cols=149 Identities=21% Similarity=0.227 Sum_probs=101.6
Q ss_pred ceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCC---C---------------cEEEEEcCCcc-cc------
Q 005344 208 EIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDH---M---------------KRVVIVDTSNE-IG------ 259 (701)
Q Consensus 208 ~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~---G---------------krViiVd~~~E-Ia------ 259 (701)
.+|+|+ +++|+.++++|||||||||||++++|-+.... | +.++++.+.+- ++
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 466666 89999999999999999999999999875431 2 12333333210 00
Q ss_pred ------cCCCCCCC---CCchh-------------------hh-------ccCCChhHHHHHHHHHHHccCCCEEEEcCC
Q 005344 260 ------GDGDVPHS---GIGRA-------------------RR-------MQVPNVNMQHSVMIEAVENHMPETIIIDEI 304 (701)
Q Consensus 260 ------~~~~ip~~---~ig~~-------------------rr-------~~v~s~G~qQRV~IArAL~~~PdVIILDEP 304 (701)
.|.. +.. ++.+. .. ..--++|+|+||.++-+++..+.++..||+
T Consensus 209 TldFa~rck~-~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 209 TLDFAARCKG-PGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred hhhHHHhccC-CccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 0100 100 01000 00 111367999999999999999999999999
Q ss_pred CCcccHHHHHHH--------HhcCCEEEEEEcCh-hHHHHhcCcEEEEeCCeEEEEecCcHHHH
Q 005344 305 GTELEALAASTI--------AQRGVQLVGTAHGM-TIDNIVKNPSLQILVGGIESVTLGDEEAK 359 (701)
Q Consensus 305 tsgLD~~a~~~l--------~e~GvtVIiTTHd~-~l~~~l~drvlvl~~G~I~~V~lgd~~a~ 359 (701)
++|||..++-++ ...+.|++++.|.. ...-.+-|.+++|.+|.+ |-.|.....
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~--iy~Gp~d~~ 349 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQ--IYQGPRDEV 349 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccce--EEeccHHHH
Confidence 999999887443 33577888877654 455667899999999998 556655443
No 456
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.58 E-value=8.1e-08 Score=92.61 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=42.8
Q ss_pred ChhHHHHHHHHHHHccCC---CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHH
Q 005344 279 NVNMQHSVMIEAVENHMP---ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTID 333 (701)
Q Consensus 279 s~G~qQRV~IArAL~~~P---dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~ 333 (701)
+.|+++.+.+...+...+ .+|++|||-.+|.+..++.+ ...+.++|+|||...++
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 568999877777776655 89999999999999998665 22479999999987654
No 457
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.54 E-value=3.1e-07 Score=93.57 Aligned_cols=117 Identities=19% Similarity=0.181 Sum_probs=70.6
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHh-cCCCCCCcEEEEEcCCcccccC-CCCCCCCC--------chh-------hhcc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIAR-MLADDHMKRVVIVDTSNEIGGD-GDVPHSGI--------GRA-------RRMQ 276 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaG-lLsp~~GkrViiVd~~~EIa~~-~~ip~~~i--------g~~-------rr~~ 276 (701)
+..|.+++|.|+||||||||...++- .+. .|.++.|+......... ......++ +.. ....
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence 77889999999999999999999853 233 47788888764321100 00000000 000 0111
Q ss_pred CCChhHHHHHHHHHHHc--cCCCEEEEcCCCCc---ccHHHHHH-------HHhcCCEEEEEEcChhH
Q 005344 277 VPNVNMQHSVMIEAVEN--HMPETIIIDEIGTE---LEALAAST-------IAQRGVQLVGTAHGMTI 332 (701)
Q Consensus 277 v~s~G~qQRV~IArAL~--~~PdVIILDEPtsg---LD~~a~~~-------l~e~GvtVIiTTHd~~l 332 (701)
..+.++.+.+.....++ .+|+++|+|||+.. .|...... +++.|.++++++|....
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAF 167 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcC
Confidence 12234455555554444 39999999999953 34433322 25679999999997654
No 458
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.54 E-value=6.5e-07 Score=104.82 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=62.0
Q ss_pred CChhHHHHHHHHHHHccCC---CEEEEcCCCCcccHHHHHH-------HHhcCCEEEEEEcChhHHHHhcCcEEEEeC--
Q 005344 278 PNVNMQHSVMIEAVENHMP---ETIIIDEIGTELEALAAST-------IAQRGVQLVGTAHGMTIDNIVKNPSLQILV-- 345 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~~~P---dVIILDEPtsgLD~~a~~~-------l~e~GvtVIiTTHd~~l~~~l~drvlvl~~-- 345 (701)
+|+|+.||+-||.=|.... -+.||||||+||-....+. +...|-|||++-|+++.+ ..+|.++-+-.
T Consensus 823 LSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVI-k~AD~IIDLGPeG 901 (935)
T COG0178 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVI-KTADWIIDLGPEG 901 (935)
T ss_pred ccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceE-eecCEEEEcCCCC
Confidence 4679999999999888765 8999999999997766543 367899999999999987 46788877653
Q ss_pred ----CeEEEEecCcHHH
Q 005344 346 ----GGIESVTLGDEEA 358 (701)
Q Consensus 346 ----G~I~~V~lgd~~a 358 (701)
|.| |..|.++.
T Consensus 902 G~~GG~i--va~GTPee 916 (935)
T COG0178 902 GDGGGEI--VASGTPEE 916 (935)
T ss_pred CCCCceE--EEecCHHH
Confidence 335 66777744
No 459
>cd02325 R3H R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=98.47 E-value=3.3e-07 Score=72.89 Aligned_cols=57 Identities=30% Similarity=0.320 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCC-CeeeecCCCChHHHHHHHHHHHHcCCceeeccCCCCceeEEec
Q 005344 599 EEVRLAIEYIVIPG-GEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655 (701)
Q Consensus 599 ~e~~~ai~~~v~~~-~~~vel~pr~~~i~~~q~~l~~~y~l~~~~~g~~~~~r~~i~p 655 (701)
++.+.+++..+... +..+++.|.++..|+++|+|++.|+|.++|.|.+++|++.|++
T Consensus 2 ~~~~~~l~~f~~~~~~~~~~~~p~~~~~R~~vH~la~~~~L~s~s~g~~~~r~v~i~~ 59 (59)
T cd02325 2 EEREEELEAFAKDAAGKSLELPPMNSYERKLIHDLAEYYGLKSESEGEGPNRRVVITK 59 (59)
T ss_pred hHHHHHHHHHHHhhcCCeEEcCCCCHHHHHHHHHHHHHCCCEEEEecCCCCcEEEEeC
Confidence 46778888888888 9999999999999999999999999999999999999999975
No 460
>PF01424 R3H: R3H domain; InterPro: IPR001374 The R3H motif: a domain that binds single-stranded nucleic acids. The most prominent feature of the R3H motif is the presence of an invariant arginine residue and a highly conserved histidine residue that are separated by three residues. The motif also displays a conserved pattern of hydrophobic residues, prolines and glycines. The R3H motif is present in proteins from a diverse range of organisms that includes Eubacteria, green plants, fungi and various groups of metazoans. Intriguingly, it has not yet been identified in Archaea and Escherichia coli. The sequences that contain the R3H domain, many of which are hypothetical proteins predicted from genome sequencing projects, can be grouped into eight families on the basis of similarities outside the R3H region. Three of the families contain ATPase domains either upstream (families II and VII) or downstream of the R3H domain (family VIII). The N-terminal part of members of family VII contains an SF1 helicase domain5. The C-terminal part of family VIII contains an SF2 DEAH helicase domain5. The ATPase domain in the members of family II is similar to the stage-III sporulation protein AA (S3AA_BACSU), the proteasome ATPase, bacterial transcription-termination factor r and the mitochondrial F1-ATPase b subunit (the F5 helicase family5). Family VI contains Cys-rich repeats6, as well as a ring-type zinc finger upstream of the R3H domain. JAG bacterial proteins (family I) contain a KH domain N-terminal to the R3H domain. The functions of other domains in R3H proteins support the notion that the R3H domain might be involved in interactions with single-stranded nucleic acids [].; GO: 0003676 nucleic acid binding; PDB: 1WHR_A 1MSZ_A 1UG8_A 3GKU_B 2CPM_A.
Probab=98.45 E-value=3.3e-07 Score=75.78 Aligned_cols=59 Identities=25% Similarity=0.317 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCCeeeecCCCChHHHHHHHHHHHHcCCceeeccCCCCceeEEec
Q 005344 597 ALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESYQLAAENSGTELNPRLQILP 655 (701)
Q Consensus 597 al~e~~~ai~~~v~~~~~~vel~pr~~~i~~~q~~l~~~y~l~~~~~g~~~~~r~~i~p 655 (701)
.|++....+.+.++..+++++|.|-++.-|++.|++++.|+|.|.|.|.+|+|+|.|++
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~f~pm~~~~R~~iH~~a~~~gL~s~S~g~~~~R~vvv~k 62 (63)
T PF01424_consen 4 ELEKIEEKLIEFFLSSGESLEFPPMNSFERKLIHELAEYYGLKSKSEGEGPNRRVVVSK 62 (63)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEC--SHHHHHHHHHHHHCTEEEEEESSSSSSEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEEe
Confidence 34444445555566667799999999999999999999999999999999999999986
No 461
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.43 E-value=5.9e-07 Score=113.75 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=66.3
Q ss_pred cCCChhHHHHHHHHHHHccCC--CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEe--
Q 005344 276 QVPNVNMQHSVMIEAVENHMP--ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQIL-- 344 (701)
Q Consensus 276 ~v~s~G~qQRV~IArAL~~~P--dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~-- 344 (701)
.-.|+||+||++||+++..+| +++||||||++||+.....+ ++.|.|||+++|+.++ ..+||+++.+.
T Consensus 475 ~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~v-i~~aDrVi~L~pG 553 (1809)
T PRK00635 475 ATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQM-ISLADRIIDIGPG 553 (1809)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH-HHhCCEEEEEcCC
Confidence 446889999999999999999 89999999999999988544 5679999999999995 47999999996
Q ss_pred ----CCeEEEEecCcHH
Q 005344 345 ----VGGIESVTLGDEE 357 (701)
Q Consensus 345 ----~G~I~~V~lgd~~ 357 (701)
.|++ +..++..
T Consensus 554 ag~~gG~I--v~~G~~~ 568 (1809)
T PRK00635 554 AGIFGGEV--LFNGSPR 568 (1809)
T ss_pred cccCCCEE--EEecCHH
Confidence 5566 4445543
No 462
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.39 E-value=1e-06 Score=92.01 Aligned_cols=138 Identities=17% Similarity=0.208 Sum_probs=89.2
Q ss_pred ceeccc--cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-E-EEE-EcCCc-c-------c-----ccCCCCCCC--
Q 005344 208 EIICDL--VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-R-VVI-VDTSN-E-------I-----GGDGDVPHS-- 267 (701)
Q Consensus 208 ~~L~dl--I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-r-Vii-Vd~~~-E-------I-----a~~~~ip~~-- 267 (701)
.+++.+ +..|+.++|+||+|||||||++.|++.+....+. . +++ +.++. + + ....+.+..
T Consensus 5 ~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~ 84 (249)
T cd01128 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERH 84 (249)
T ss_pred hheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHH
Confidence 355555 7789999999999999999999999988764322 1 222 33321 1 1 000000100
Q ss_pred ---------------CCc--------hhhhc------------cCCChhH--------HHHHHHHHHHccCCCEEEEcCC
Q 005344 268 ---------------GIG--------RARRM------------QVPNVNM--------QHSVMIEAVENHMPETIIIDEI 304 (701)
Q Consensus 268 ---------------~ig--------~~rr~------------~v~s~G~--------qQRV~IArAL~~~PdVIILDEP 304 (701)
..| ...++ ..+++|+ +|++.+|+++..++.+.++ +
T Consensus 85 ~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~ 162 (249)
T cd01128 85 VQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--A 162 (249)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--e
Confidence 000 00000 0135677 9999999998789999999 8
Q ss_pred CCcccHHH------HHHHHhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 305 GTELEALA------ASTIAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 305 tsgLD~~a------~~~l~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
|..+|... ...+...+-+.|+.+|.+.... ..+.+.++..|.+
T Consensus 163 T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~-~~paI~vl~s~sr 211 (249)
T cd01128 163 TALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERR-IFPAIDILKSGTR 211 (249)
T ss_pred eheecCCCcccchHHHHHhcCCCcEEEEchHHhhCC-CCCeEEEcCCCCc
Confidence 88877321 2344446789999999887764 6678888888876
No 463
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.39 E-value=1.8e-06 Score=96.90 Aligned_cols=136 Identities=20% Similarity=0.231 Sum_probs=84.4
Q ss_pred ceeccc--cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-ccccC--CCCCCCCCchhhhcc-----C
Q 005344 208 EIICDL--VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-EIGGD--GDVPHSGIGRARRMQ-----V 277 (701)
Q Consensus 208 ~~L~dl--I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-EIa~~--~~ip~~~ig~~rr~~-----v 277 (701)
.+++++ +.+|+.++|+|+||+|||||+++|+++..++.|. |.++.++. ++... ..+....+. +..- -
T Consensus 147 ~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gv-I~~~Gerg~ev~e~~~~~l~~~~l~--r~v~vv~~~~ 223 (438)
T PRK07721 147 RAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNV-IALIGERGREVREFIERDLGPEGLK--RSIVVVATSD 223 (438)
T ss_pred hhhheeeeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEE-EEEEecCCccHHHHHHhhcChhhhc--CeEEEEECCC
Confidence 466666 7899999999999999999999999999887653 33333332 22210 000000000 0000 0
Q ss_pred CChhHHHHHHHH---HHHc---cCCC-EEEEc-----------------CC--CCcccHHHHHHH-------H--hcCC-
Q 005344 278 PNVNMQHSVMIE---AVEN---HMPE-TIIID-----------------EI--GTELEALAASTI-------A--QRGV- 321 (701)
Q Consensus 278 ~s~G~qQRV~IA---rAL~---~~Pd-VIILD-----------------EP--tsgLD~~a~~~l-------~--e~Gv- 321 (701)
.+.+++.++..+ .|.. +.-+ +|++| || +.|+|+.....+ . +.|.
T Consensus 224 ~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsI 303 (438)
T PRK07721 224 QPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSI 303 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCe
Confidence 123444433322 2221 2233 45566 75 568999887544 2 2575
Q ss_pred ----EEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 322 ----QLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 322 ----tVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
||++.+|+++. .+|+.+..+.+|.|
T Consensus 304 T~~~TVlv~~hdm~e--~i~d~v~~i~dG~I 332 (438)
T PRK07721 304 TAFYTVLVDGDDMNE--PIADTVRGILDGHF 332 (438)
T ss_pred eeEEEEEEECCCCCc--hhhhhEEEecCEEE
Confidence 99999999984 89999999999998
No 464
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.33 E-value=1.4e-06 Score=87.20 Aligned_cols=35 Identities=3% Similarity=0.080 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCC-----CcccHHHHHHH
Q 005344 282 MQHSVMIEAVENHMPETIIIDEIG-----TELEALAASTI 316 (701)
Q Consensus 282 ~qQRV~IArAL~~~PdVIILDEPt-----sgLD~~a~~~l 316 (701)
++++..||+++.++|+++++|||+ ++||+...+.+
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~ 196 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQA 196 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHH
Confidence 567789999999999999999999 99999998766
No 465
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.31 E-value=2.2e-06 Score=95.89 Aligned_cols=150 Identities=17% Similarity=0.132 Sum_probs=93.7
Q ss_pred EEEeEEEEECcccccccceeccc--cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC-cccccC-C-CCC
Q 005344 191 QVIGLTCRVGRAVAGSAEIICDL--VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS-NEIGGD-G-DVP 265 (701)
Q Consensus 191 eI~nLs~rygr~v~G~~~~L~dl--I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~-~EIa~~-~-~ip 265 (701)
+...++..|.. +..+++.+ +.+|+.++|+|++|+|||||+++|++...++.|. +.++.++ .|.... . ...
T Consensus 132 ~r~~i~~~l~T----GiraID~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gv-I~~iGerg~ev~e~~~~~l~ 206 (432)
T PRK06793 132 EREEITDVFET----GIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINV-ISLVGERGREVKDFIRKELG 206 (432)
T ss_pred heechhhccCC----CCEEEeccceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEE-EEeCCCCcccHHHHHHHHhh
Confidence 34455555542 23567766 8899999999999999999999999999887653 4445444 222100 0 000
Q ss_pred CCCCchh---hhccCCChhHHHHHHHHHHHc-------cCCCEEEEcCCCCcccHHHHHHH-----HhcCCEEEEEEcCh
Q 005344 266 HSGIGRA---RRMQVPNVNMQHSVMIEAVEN-------HMPETIIIDEIGTELEALAASTI-----AQRGVQLVGTAHGM 330 (701)
Q Consensus 266 ~~~ig~~---rr~~v~s~G~qQRV~IArAL~-------~~PdVIILDEPtsgLD~~a~~~l-----~e~GvtVIiTTHd~ 330 (701)
..++... ....-.+.+++.++..+++.. .++-+|++|++|...|+...-.+ -..|.+..+.+|-.
T Consensus 207 ~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l~ 286 (432)
T PRK06793 207 EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMK 286 (432)
T ss_pred hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccch
Confidence 0011100 001113468999998888776 68999999999999998743222 12477777777755
Q ss_pred hHHHHhcCcEEEEeCCeEE
Q 005344 331 TIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 331 ~l~~~l~drvlvl~~G~I~ 349 (701)
.+.+..+. ...|.|.
T Consensus 287 ~L~ERag~----~~~GSiT 301 (432)
T PRK06793 287 KLLERSGK----TQKGSIT 301 (432)
T ss_pred hHHHHhcc----CCCcceE
Confidence 55554443 2455553
No 466
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.29 E-value=9.2e-07 Score=97.63 Aligned_cols=131 Identities=12% Similarity=0.179 Sum_probs=94.5
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcE---------EEEEcCCcccccC------------------CCCCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKR---------VVIVDTSNEIGGD------------------GDVPH 266 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gkr---------ViiVd~~~EIa~~------------------~~ip~ 266 (701)
...|++.+++|-||-||||-++.++|-++|.-|+. +.++-+ .|++.. ..+|.
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frg-selq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRG-SELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhh-HHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 56899999999999999999999999999987641 011111 111100 00111
Q ss_pred C-------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH---
Q 005344 267 S-------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI--- 316 (701)
Q Consensus 267 ~-------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--- 316 (701)
. .++. .+.....++|+-||.+||++-++..|+.++|||.+.||+..+...
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~ 255 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT 255 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH
Confidence 0 0000 012334678999999999999999999999999999999877322
Q ss_pred ----HhcCCEEEEEEcChhHHHHhcCcEEEEeC
Q 005344 317 ----AQRGVQLVGTAHGMTIDNIVKNPSLQILV 345 (701)
Q Consensus 317 ----~e~GvtVIiTTHd~~l~~~l~drvlvl~~ 345 (701)
.+-..-+|++-||++..+.+.|-+..+..
T Consensus 256 IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 256 IRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred HHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 34467799999999999999999887763
No 467
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.24 E-value=3.6e-06 Score=75.62 Aligned_cols=102 Identities=25% Similarity=0.391 Sum_probs=60.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
.+..++|.||+|+|||||++.++..+... +..+.+++......... .... ... ..+...........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~~~~~------~~~~----~~~--~~~~~~~~~~~~~~ 84 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLEGLV------VAEL----FGH--FLVRLLFELAEKAK 84 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhhhhhH------HHHH----hhh--hhHhHHHHhhccCC
Confidence 36799999999999999999999988633 34456665432111000 0000 000 02334445566678
Q ss_pred CCEEEEcCCCCcccHHHHHH----HH--------hcCCEEEEEEcChh
Q 005344 296 PETIIIDEIGTELEALAAST----IA--------QRGVQLVGTAHGMT 331 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~----l~--------e~GvtVIiTTHd~~ 331 (701)
+.+|++||.-.. +...... +. ..++.+|++++...
T Consensus 85 ~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 85 PGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 999999999743 2222211 21 24778888887543
No 468
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.22 E-value=2.9e-06 Score=97.79 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=60.0
Q ss_pred CCChhHHHHHHHHHHHccC----CCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCC
Q 005344 277 VPNVNMQHSVMIEAVENHM----PETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVG 346 (701)
Q Consensus 277 v~s~G~qQRV~IArAL~~~----PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G 346 (701)
..++|+++|++||++++.. |++||+|||++++|...+..+ ...|.+||++||+...+. +||+++.+..|
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k~ 518 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEKE 518 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEEc
Confidence 4688999999999999885 699999999999999988544 235899999999999885 89999999875
No 469
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.18 E-value=3.9e-06 Score=103.09 Aligned_cols=74 Identities=8% Similarity=-0.049 Sum_probs=64.5
Q ss_pred hccCCChhHHHHHHHHHHHcc----------CCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHh
Q 005344 274 RMQVPNVNMQHSVMIEAVENH----------MPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIV 336 (701)
Q Consensus 274 r~~v~s~G~qQRV~IArAL~~----------~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l 336 (701)
.+...|+|+++++.||++|+. +|++||+|||+++||+.....+ ...|.+|++|||+..+...+
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhh
Confidence 445679999999999999986 7999999999999999987443 45789999999999999999
Q ss_pred cCcEEEEeCCe
Q 005344 337 KNPSLQILVGG 347 (701)
Q Consensus 337 ~drvlvl~~G~ 347 (701)
+++++++..|+
T Consensus 1027 ~~~i~v~~~~~ 1037 (1042)
T TIGR00618 1027 PHRILVKKTNA 1037 (1042)
T ss_pred CCEEEEEECCC
Confidence 99999997653
No 470
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.16 E-value=1.2e-05 Score=81.12 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=46.9
Q ss_pred HHccCCCEEEEcCCCCcccHHHHHH-------HHhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEec
Q 005344 291 VENHMPETIIIDEIGTELEALAAST-------IAQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTL 353 (701)
Q Consensus 291 AL~~~PdVIILDEPtsgLD~~a~~~-------l~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~l 353 (701)
-..+.--+.|||||-++|-+.-+.+ +++.|.++|+.||..-+...=.-.++.+..+++..+..
T Consensus 142 ~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~~~~f 211 (233)
T COG3910 142 NRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGIEERDF 211 (233)
T ss_pred HHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCccccch
Confidence 3446678999999999999987743 36789999999998766555555677777777654433
No 471
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.14 E-value=2.6e-06 Score=87.38 Aligned_cols=114 Identities=21% Similarity=0.237 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcC-----------CCCCCcEEEEEcCCcc---cc--------cCCCCCCC-----CC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARML-----------ADDHMKRVVIVDTSNE---IG--------GDGDVPHS-----GI 269 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlL-----------sp~~GkrViiVd~~~E---Ia--------~~~~ip~~-----~i 269 (701)
|...+|+||+|+|||||+-.++--+ .+..+.+|+|+..... +. ..+..+.. .-
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 5677999999999999999997532 2233456888875421 10 00000000 00
Q ss_pred chhhhccCCC-----hhHHHHHHHHHHHccCCCEEEEcCCCC------cccHHHHHHH--------HhcCCEEEEEEcCh
Q 005344 270 GRARRMQVPN-----VNMQHSVMIEAVENHMPETIIIDEIGT------ELEALAASTI--------AQRGVQLVGTAHGM 330 (701)
Q Consensus 270 g~~rr~~v~s-----~G~qQRV~IArAL~~~PdVIILDEPts------gLD~~a~~~l--------~e~GvtVIiTTHd~ 330 (701)
+....+.... .-......+..+..++|++||+| |.+ +.|......+ .+.|+++|+++|..
T Consensus 81 g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 81 GRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred cCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 0000000000 01111222333456899999999 543 4676655322 35699999999965
Q ss_pred h
Q 005344 331 T 331 (701)
Q Consensus 331 ~ 331 (701)
.
T Consensus 160 K 160 (239)
T cd01125 160 K 160 (239)
T ss_pred c
Confidence 3
No 472
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.10 E-value=9.6e-06 Score=79.93 Aligned_cols=106 Identities=31% Similarity=0.432 Sum_probs=58.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCCC--------------CcEEE----EEcCCcc-cccCCCCCCCCCchhhhccCCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLADDH--------------MKRVV----IVDTSNE-IGGDGDVPHSGIGRARRMQVPN 279 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp~~--------------GkrVi----iVd~~~E-Ia~~~~ip~~~ig~~rr~~v~s 279 (701)
.++|.|+||+||||++.-|+..+.... |++++ -+++..+ +-+........+|. +.|.-
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGk---Y~V~v 83 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGK---YGVNV 83 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccce---EEeeH
Confidence 678999999999999999998776541 22222 1121111 00000001111111 11111
Q ss_pred hhHHHHHHH---HHHHccCCCEEEEcCCCCcccHHHH------HHHHhcCCEEEEEEcCh
Q 005344 280 VNMQHSVMI---EAVENHMPETIIIDEIGTELEALAA------STIAQRGVQLVGTAHGM 330 (701)
Q Consensus 280 ~G~qQRV~I---ArAL~~~PdVIILDEPtsgLD~~a~------~~l~e~GvtVIiTTHd~ 330 (701)
..-.++++ .+|+ ...|+||+||++ .++.... +++...+.-+|+|.|-.
T Consensus 84 -~~le~i~~~al~rA~-~~aDvIIIDEIG-pMElks~~f~~~ve~vl~~~kpliatlHrr 140 (179)
T COG1618 84 -EGLEEIAIPALRRAL-EEADVIIIDEIG-PMELKSKKFREAVEEVLKSGKPLIATLHRR 140 (179)
T ss_pred -HHHHHHhHHHHHHHh-hcCCEEEEeccc-chhhccHHHHHHHHHHhcCCCcEEEEEecc
Confidence 11123333 3333 347999999998 5555544 34466788899999954
No 473
>PRK04296 thymidine kinase; Provisional
Probab=98.09 E-value=4e-05 Score=76.49 Aligned_cols=123 Identities=16% Similarity=0.219 Sum_probs=67.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC--cccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHcc
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS--NEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~--~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
|.++++.||+|+||||++..++..+.. .|++|.++... ..........+.++... ...+.....-.+. +.. ...
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~-~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~-~~~~~~~~~~~~~-~~~-~~~ 77 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE-RGMKVLVFKPAIDDRYGEGKVVSRIGLSRE-AIPVSSDTDIFEL-IEE-EGE 77 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH-cCCeEEEEeccccccccCCcEecCCCCccc-ceEeCChHHHHHH-HHh-hCC
Confidence 678999999999999999877766543 47888877431 11110000111111110 0111111110000 111 345
Q ss_pred CCCEEEEcCCCCcccHH---H-HHHHHhcCCEEEEEEcChh----------HHHHhcCcEEEEe
Q 005344 295 MPETIIIDEIGTELEAL---A-ASTIAQRGVQLVGTAHGMT----------IDNIVKNPSLQIL 344 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~---a-~~~l~e~GvtVIiTTHd~~----------l~~~l~drvlvl~ 344 (701)
++++|++||.-. ++.. . .+.++..|+++|++.++.+ .+..++|.+..+.
T Consensus 78 ~~dvviIDEaq~-l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~ 140 (190)
T PRK04296 78 KIDCVLIDEAQF-LDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK 140 (190)
T ss_pred CCCEEEEEcccc-CCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEee
Confidence 789999999953 4433 2 2334778999999999833 3334566665443
No 474
>PRK10869 recombination and repair protein; Provisional
Probab=98.09 E-value=8.6e-06 Score=93.93 Aligned_cols=69 Identities=10% Similarity=0.095 Sum_probs=59.4
Q ss_pred CCChhHHHHHHHHHHHcc----CCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCC
Q 005344 277 VPNVNMQHSVMIEAVENH----MPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVG 346 (701)
Q Consensus 277 v~s~G~qQRV~IArAL~~----~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G 346 (701)
+.++|+++|++||++++. .|+++|+|||++++|......+ ...+.+||++||+..++ .+||+.+.+..+
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEecc
Confidence 468999999999999997 5899999999999999988544 23579999999999877 699998888764
No 475
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.07 E-value=1.6e-05 Score=96.08 Aligned_cols=114 Identities=18% Similarity=0.287 Sum_probs=65.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcC-CCCCCcEEEEEcCC-cccccCCCCCCCCCchhhhc-cCCChhHHHHHHHHHHH
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARML-ADDHMKRVVIVDTS-NEIGGDGDVPHSGIGRARRM-QVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlL-sp~~GkrViiVd~~-~EIa~~~~ip~~~ig~~rr~-~v~s~G~qQRV~IArAL 292 (701)
.+.+++|.|||++||||+||.++-.. -...|. +|+-. .++.....+ ...+|..+.+ .-.|.-|.....++.++
T Consensus 606 ~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~---~VPa~~a~i~~~d~I-~triga~d~i~~g~STF~~E~~~~~~il 681 (854)
T PRK05399 606 ERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS---FVPAESARIGIVDRI-FTRIGASDDLASGRSTFMVEMTETANIL 681 (854)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC---ceeccceEecccCee-eeccCcccccccCcccHHHHHHHHHHHH
Confidence 45789999999999999999986542 111232 22211 111111000 0112211111 11233344555566666
Q ss_pred cc--CCCEEEEcCC---CCcccHHHH-----HHHHhc-CCEEEEEEcChhHH
Q 005344 293 NH--MPETIIIDEI---GTELEALAA-----STIAQR-GVQLVGTAHGMTID 333 (701)
Q Consensus 293 ~~--~PdVIILDEP---tsgLD~~a~-----~~l~e~-GvtVIiTTHd~~l~ 333 (701)
.+ .+.++|+||| |+.+|-.+. +.+.+. |..+|++||..++.
T Consensus 682 ~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~ 733 (854)
T PRK05399 682 NNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELT 733 (854)
T ss_pred HhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHH
Confidence 55 8999999999 667786554 233555 68999999986554
No 476
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.06 E-value=1.5e-05 Score=90.43 Aligned_cols=182 Identities=23% Similarity=0.329 Sum_probs=89.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCC-cEEEEEcCCcc-cccCCCCCCCCCchhhhccCC--ChhHHHHHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHM-KRVVIVDTSNE-IGGDGDVPHSGIGRARRMQVP--NVNMQHSVMIE 289 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~G-krViiVd~~~E-Ia~~~~ip~~~ig~~rr~~v~--s~G~qQRV~IA 289 (701)
+..|++++|+|||||||||++..|++.+....| ++|++++.... ++....+.. + .+.+.+. .........+.
T Consensus 253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~--~--AeilGVpv~~~~~~~Dl~~a 328 (484)
T PRK06995 253 LDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRI--Y--GKILGVPVHAVKDAADLRLA 328 (484)
T ss_pred ccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHH--H--HHHhCCCeeccCCchhHHHH
Confidence 456899999999999999999999998866655 57888876532 211110000 0 0111111 00111123333
Q ss_pred HHHccCCCEEEEcCCCCc-ccHHHH---HHHHhcC--C-E-EEE--EEcChhHHHHhcCcEEEEeCCeEEEEecCcHHHH
Q 005344 290 AVENHMPETIIIDEIGTE-LEALAA---STIAQRG--V-Q-LVG--TAHGMTIDNIVKNPSLQILVGGIESVTLGDEEAK 359 (701)
Q Consensus 290 rAL~~~PdVIILDEPtsg-LD~~a~---~~l~e~G--v-t-VIi--TTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a~ 359 (701)
..-..+-+++++|.++.. -|.... ..+.... + + +++ +++...+.+.+...--....|-| ++.-|+...
T Consensus 329 L~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~~~~~g~I--lTKlDet~~ 406 (484)
T PRK06995 329 LSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRGPGLAGCI--LTKLDEAAS 406 (484)
T ss_pred HHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhccCCCCEEE--EeCCCCccc
Confidence 444456678888887633 232211 1222211 1 1 111 22443333222211112224444 556666666
Q ss_pred hhhhHHHHhhccCCCcceeeeeeeecceeEEEcchhhhHHHHhh
Q 005344 360 KRKVQKTILERKGPPTFTCAVEMISRTECRVHHRLDATVDAILA 403 (701)
Q Consensus 360 ~r~~qe~Iler~~~p~f~~~vev~~r~~~~v~~~v~~avd~lL~ 403 (701)
...+...+.+...+-.|-...+-++.+. ...+....++.++.
T Consensus 407 ~G~~l~i~~~~~lPI~yvt~GQ~VPeDL--~~a~~~~lv~~ll~ 448 (484)
T PRK06995 407 LGGALDVVIRYKLPLHYVSNGQRVPEDL--HLANKKFLLHRAFC 448 (484)
T ss_pred chHHHHHHHHHCCCeEEEecCCCChhhh--ccCCHHHHHHHHhc
Confidence 6666566666666655555444443321 12234445555554
No 477
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.02 E-value=1.1e-05 Score=91.02 Aligned_cols=128 Identities=22% Similarity=0.288 Sum_probs=73.6
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCC-CCCCCCCchhhhccCC-ChhHHHHHHHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDG-DVPHSGIGRARRMQVP-NVNMQHSVMIEAV 291 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~-~ip~~~ig~~rr~~v~-s~G~qQRV~IArA 291 (701)
+.+|++++|.|+||+|||||+..++..+... |.+|+|+.......... .....++.. ..+.+. .... .-.+..+
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EEs~~qi~~ra~rlg~~~-~~l~~~~e~~~--~~I~~~i 166 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEESLQQIKMRAIRLGLPE-PNLYVLSETNW--EQICANI 166 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcCCHHHHHHHHHHcCCCh-HHeEEcCCCCH--HHHHHHH
Confidence 6789999999999999999999998877654 45688887642211000 000001110 011111 1111 1222334
Q ss_pred HccCCCEEEEcCCCCcc----c-----HHHH--------HHHHhcCCEEEEEEcChhH--------HHHhcCcEEEEeC
Q 005344 292 ENHMPETIIIDEIGTEL----E-----ALAA--------STIAQRGVQLVGTAHGMTI--------DNIVKNPSLQILV 345 (701)
Q Consensus 292 L~~~PdVIILDEPtsgL----D-----~~a~--------~~l~e~GvtVIiTTHd~~l--------~~~l~drvlvl~~ 345 (701)
...+|+++|+|.+.+-. + .... +.+++.|+++++|+|.... ++.++|.++.+..
T Consensus 167 ~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~ 245 (454)
T TIGR00416 167 EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG 245 (454)
T ss_pred HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEec
Confidence 45689999999986411 1 1111 1236789999999995442 4455666655543
No 478
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=3.8e-06 Score=92.58 Aligned_cols=162 Identities=26% Similarity=0.364 Sum_probs=84.3
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCC-cEEEEEcCCcc-cccCCCCCCCCCchhhhccC-----CChhHHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHM-KRVVIVDTSNE-IGGDGDVPHSGIGRARRMQV-----PNVNMQHSV 286 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~G-krViiVd~~~E-Ia~~~~ip~~~ig~~rr~~v-----~s~G~qQRV 286 (701)
+..|++++|+||||+||||++..|++.+....| ++|.++..... ++....+.. + .+.+++ .+.+. +
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~--~--a~~~gv~~~~~~~~~~---l 206 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRI--F--GKILGVPVHAVKDGGD---L 206 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHH--H--HHHcCCceEecCCccc---H
Confidence 778999999999999999999999987644434 57777765432 211110000 0 001111 11111 1
Q ss_pred HHHHHHccCCCEEEEcCCCCc-ccHHHHHHHH---hcC--CE-EEE--E-EcChhH---HHHhcCcE------EEEeCCe
Q 005344 287 MIEAVENHMPETIIIDEIGTE-LEALAASTIA---QRG--VQ-LVG--T-AHGMTI---DNIVKNPS------LQILVGG 347 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPtsg-LD~~a~~~l~---e~G--vt-VIi--T-THd~~l---~~~l~drv------lvl~~G~ 347 (701)
..+.....+.++||+|+++.. .|....+.+. ... .. +++ . +|...+ +..++.-. +....|-
T Consensus 207 ~~~l~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~ 286 (374)
T PRK14722 207 QLALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGC 286 (374)
T ss_pred HHHHHHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEE
Confidence 122233467899999999864 4554443332 111 11 222 1 233222 22222110 0112455
Q ss_pred EEEEecCcHHHHhhhhHHHHhhccCCCcceeeeeeee
Q 005344 348 IESVTLGDEEAKKRKVQKTILERKGPPTFTCAVEMIS 384 (701)
Q Consensus 348 I~~V~lgd~~a~~r~~qe~Iler~~~p~f~~~vev~~ 384 (701)
| ++.-|+......+...+.+...+-.|-...+-++
T Consensus 287 I--~TKlDEt~~~G~~l~~~~~~~lPi~yvt~Gq~VP 321 (374)
T PRK14722 287 I--LTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVP 321 (374)
T ss_pred E--EeccccCCCccHHHHHHHHHCcCeEEEecCCCCC
Confidence 5 5666776666666666666655555544444443
No 479
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.01 E-value=1.2e-05 Score=91.56 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=59.8
Q ss_pred cCCChhHHHHHHHHHHHc----------cCCCEEEEcCCC-CcccHHHHHHH----Hh-cCCEEEEEEcChhHHHHhcCc
Q 005344 276 QVPNVNMQHSVMIEAVEN----------HMPETIIIDEIG-TELEALAASTI----AQ-RGVQLVGTAHGMTIDNIVKNP 339 (701)
Q Consensus 276 ~v~s~G~qQRV~IArAL~----------~~PdVIILDEPt-sgLD~~a~~~l----~e-~GvtVIiTTHd~~l~~~l~dr 339 (701)
.-.|+|++|+++||++++ .+|++||+|||+ ++||+.....+ .+ .|.++|++||+..+. ..+|+
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~-~~~d~ 545 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDP-QKFDR 545 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhch-hhhhc
Confidence 346889999999998887 589999999998 68999988554 22 588999999997766 46788
Q ss_pred EEEEeC-CeEEE
Q 005344 340 SLQILV-GGIES 350 (701)
Q Consensus 340 vlvl~~-G~I~~ 350 (701)
++.+.. |+...
T Consensus 546 ~~~l~~~~~~~~ 557 (562)
T PHA02562 546 HLKMEKVGRFSV 557 (562)
T ss_pred EEEEEEECCeeE
Confidence 888876 66643
No 480
>PRK03918 chromosome segregation protein; Provisional
Probab=97.99 E-value=2.1e-05 Score=94.35 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=59.1
Q ss_pred hccCCChhHHHH------HHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcE
Q 005344 274 RMQVPNVNMQHS------VMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPS 340 (701)
Q Consensus 274 r~~v~s~G~qQR------V~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drv 340 (701)
.....++|++++ ++|+++++..|+++|+||||++||+..+..+ ...|.+||++||+..+. .+||++
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~~d~~ 863 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DAADYV 863 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-HhCCeE
Confidence 344578999994 5555678889999999999999999887544 34578999999999865 579999
Q ss_pred EEEe-CCeEEE
Q 005344 341 LQIL-VGGIES 350 (701)
Q Consensus 341 lvl~-~G~I~~ 350 (701)
+.+. .++...
T Consensus 864 ~~l~~~~~~s~ 874 (880)
T PRK03918 864 IRVSLEGGVSK 874 (880)
T ss_pred EEEEecCCeeE
Confidence 8887 344433
No 481
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.97 E-value=7.1e-05 Score=77.54 Aligned_cols=108 Identities=19% Similarity=0.308 Sum_probs=55.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC--C------CCCCcEEEEEcCCcccccCCCCCCCCCchhhhc-cCCCh---hHHHH
Q 005344 218 GSILVIGPPGVGKTTLIREIARML--A------DDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRM-QVPNV---NMQHS 285 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL--s------p~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~-~v~s~---G~qQR 285 (701)
.+++|.|||.+||||+||.|+-.. + |-..-.+.++|. |- . .++..+.. .-.+. .+++-
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~---I~-----t--~~~~~d~~~~~~S~F~~E~~~~ 113 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDR---IF-----T--RIGDDDSIESGLSTFMAEMKRL 113 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SE---EE-----E--EES---SSTTSSSHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccE---EE-----e--ecccccccccccccHHHhHHHH
Confidence 489999999999999999987432 2 211111111111 10 0 00000000 00111 22222
Q ss_pred HHHHHHHccCCCEEEEcCCCCcccHHHH--------HHHHh-cCCEEEEEEcChhHHHHh
Q 005344 286 VMIEAVENHMPETIIIDEIGTELEALAA--------STIAQ-RGVQLVGTAHGMTIDNIV 336 (701)
Q Consensus 286 V~IArAL~~~PdVIILDEPtsgLD~~a~--------~~l~e-~GvtVIiTTHd~~l~~~l 336 (701)
-.|.. .+..-.++|+||++.|=++... +.+.+ .+..+|++||..++....
T Consensus 114 ~~il~-~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~~ 172 (235)
T PF00488_consen 114 SSILR-NATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAELL 172 (235)
T ss_dssp HHHHH-H--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGHH
T ss_pred Hhhhh-hcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHHh
Confidence 22211 2345678999999887665544 33355 589999999998876543
No 482
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.97 E-value=7.9e-05 Score=89.72 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=45.4
Q ss_pred ccCCCEEEEcCCCCcc-cHHHHHH-------HHhcCCEEEEEEcChhHHH---------HhcCcEEEEeCCeE
Q 005344 293 NHMPETIIIDEIGTEL-EALAAST-------IAQRGVQLVGTAHGMTIDN---------IVKNPSLQILVGGI 348 (701)
Q Consensus 293 ~~~PdVIILDEPtsgL-D~~a~~~-------l~e~GvtVIiTTHd~~l~~---------~l~drvlvl~~G~I 348 (701)
..+|.+|++|||..+| |+..... +++.|.++|++||+.+.+. ..|+..+.+.+|.+
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a 722 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAA 722 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccc
Confidence 5799999999999999 6766533 3567999999999998765 46888888888876
No 483
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.94 E-value=2.5e-05 Score=86.82 Aligned_cols=101 Identities=20% Similarity=0.297 Sum_probs=61.1
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~ 293 (701)
+..+..++|.||||||||||++.+++.+... ++.+... ++ ... .+......-+-.+..+..
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~~l~~~----fi~i~~s-~l------~~k--------~~ge~~~~lr~lf~~A~~ 236 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT----FIRVVGS-EF------VQK--------YLGEGPRMVRDVFRLARE 236 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcCCC----EEEEehH-HH------HHH--------hcchhHHHHHHHHHHHHh
Confidence 4566789999999999999999999976422 2222221 11 000 011111122345566777
Q ss_pred cCCCEEEEcCCC----------CcccHHHHHHH-----------HhcCCEEEEEEcChhHH
Q 005344 294 HMPETIIIDEIG----------TELEALAASTI-----------AQRGVQLVGTAHGMTID 333 (701)
Q Consensus 294 ~~PdVIILDEPt----------sgLD~~a~~~l-----------~e~GvtVIiTTHd~~l~ 333 (701)
+.|.+|++||+- ++.|....+.+ ...++.+|++||..+.+
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 899999999953 33444333222 12467899999976544
No 484
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.91 E-value=3e-05 Score=87.28 Aligned_cols=126 Identities=22% Similarity=0.367 Sum_probs=71.9
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCC-CCCCCCCchhhhccC-CChhHHHHHHHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDG-DVPHSGIGRARRMQV-PNVNMQHSVMIEAV 291 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~-~ip~~~ig~~rr~~v-~s~G~qQRV~IArA 291 (701)
+.+|.+++|.|+||+|||||+..++..... .|.+|+|+.......... .....++... .+.+ ...... -.+..+
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~-~g~~vlYvs~Ees~~qi~~ra~rlg~~~~-~l~~~~e~~l~--~i~~~i 152 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAA-AGGKVLYVSGEESASQIKLRAERLGLPSD-NLYLLAETNLE--AILATI 152 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEccccHHHHHHHHHHcCCChh-cEEEeCCCCHH--HHHHHH
Confidence 667899999999999999999999987753 467788887643211000 0000011000 0111 111111 223333
Q ss_pred HccCCCEEEEcCCCCcc----c-----HHHH--------HHHHhcCCEEEEEEcChh--------HHHHhcCcEEEE
Q 005344 292 ENHMPETIIIDEIGTEL----E-----ALAA--------STIAQRGVQLVGTAHGMT--------IDNIVKNPSLQI 343 (701)
Q Consensus 292 L~~~PdVIILDEPtsgL----D-----~~a~--------~~l~e~GvtVIiTTHd~~--------l~~~l~drvlvl 343 (701)
...+|++||+|++.+-. + .... ..+++.|+++|++.|-.. .++.++|-++.+
T Consensus 153 ~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~~~ag~~~lehlvD~Vi~l 229 (446)
T PRK11823 153 EEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEGAIAGPRVLEHMVDTVLYF 229 (446)
T ss_pred HhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCCCcCCcchhhhhCeEEEEE
Confidence 45689999999986422 1 1111 123677999999999432 244555555544
No 485
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.88 E-value=6.9e-05 Score=75.88 Aligned_cols=39 Identities=33% Similarity=0.392 Sum_probs=30.8
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHh-cCCCCCCcEEEEEcC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIAR-MLADDHMKRVVIVDT 254 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaG-lLsp~~GkrViiVd~ 254 (701)
+.+|++++|.|+||||||||+..++. .+. .|..++++..
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~--~g~~~~~is~ 56 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLR--DGDPVIYVTT 56 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEEc
Confidence 77899999999999999999987663 222 3667777765
No 486
>PRK01156 chromosome segregation protein; Provisional
Probab=97.86 E-value=5e-05 Score=91.82 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=60.5
Q ss_pred ccCCChhHHHHHHH------HHHHccCCCEEEEcCCCCcccHHHHHHH--------Hhc-C-CEEEEEEcChhHHHHhcC
Q 005344 275 MQVPNVNMQHSVMI------EAVENHMPETIIIDEIGTELEALAASTI--------AQR-G-VQLVGTAHGMTIDNIVKN 338 (701)
Q Consensus 275 ~~v~s~G~qQRV~I------ArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~-G-vtVIiTTHd~~l~~~l~d 338 (701)
....|+|++++++| |++++.+|+++++||||++||......+ ... | .++|++||+..++ .+||
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~d 877 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVAD 877 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-HhcC
Confidence 34578999999875 4788899999999999999999986443 122 3 4899999999987 5899
Q ss_pred cEEEEe-CCeEEEE
Q 005344 339 PSLQIL-VGGIESV 351 (701)
Q Consensus 339 rvlvl~-~G~I~~V 351 (701)
+++.+. .|++..|
T Consensus 878 ~ii~~~~~~~~s~v 891 (895)
T PRK01156 878 VAYEVKKSSGSSKV 891 (895)
T ss_pred eEEEEEecCCeeEE
Confidence 998887 5776544
No 487
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.85 E-value=5.2e-05 Score=83.66 Aligned_cols=112 Identities=26% Similarity=0.396 Sum_probs=64.9
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCC-CCCCCCCchhhhccC-CChhHHHHHHHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDG-DVPHSGIGRARRMQV-PNVNMQHSVMIEAV 291 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~-~ip~~~ig~~rr~~v-~s~G~qQRV~IArA 291 (701)
+.+|.+++|.|+||+|||||+..++..+... |.+|.|+.......... .....++.. ..+.+ ..... .-.+..+
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EEs~~qi~~Ra~rlg~~~-~~l~l~~e~~l--e~I~~~i 154 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEESPEQIKLRADRLGIST-ENLYLLAETNL--EDILASI 154 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCcCHHHHHHHHHHcCCCc-ccEEEEccCcH--HHHHHHH
Confidence 6778999999999999999999999887654 45688886542111000 000000000 00101 11111 1123334
Q ss_pred HccCCCEEEEcCCCC----ccc-----HHHH--------HHHHhcCCEEEEEEcC
Q 005344 292 ENHMPETIIIDEIGT----ELE-----ALAA--------STIAQRGVQLVGTAHG 329 (701)
Q Consensus 292 L~~~PdVIILDEPts----gLD-----~~a~--------~~l~e~GvtVIiTTHd 329 (701)
...+|++||+|++.+ .+| .... +.+++.|+++|++.|-
T Consensus 155 ~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghv 209 (372)
T cd01121 155 EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHV 209 (372)
T ss_pred HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 557999999999843 221 1111 1236789999999994
No 488
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.84 E-value=3.9e-05 Score=69.53 Aligned_cols=68 Identities=32% Similarity=0.498 Sum_probs=44.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccC-CCE
Q 005344 220 ILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHM-PET 298 (701)
Q Consensus 220 ilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~-PdV 298 (701)
++|.||+||||||+++.++..+. ..++.++....... ...+....-+-.+..+.... |.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----FPFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----SEEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----cccccccccccccc---------------ccccccccccccccccccccccee
Confidence 58999999999999999999973 45566665432211 01111222234444455555 999
Q ss_pred EEEcCCCC
Q 005344 299 IIIDEIGT 306 (701)
Q Consensus 299 IILDEPts 306 (701)
|++||.-.
T Consensus 62 l~iDe~d~ 69 (132)
T PF00004_consen 62 LFIDEIDK 69 (132)
T ss_dssp EEEETGGG
T ss_pred eeeccchh
Confidence 99999854
No 489
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=2.8e-05 Score=87.39 Aligned_cols=128 Identities=16% Similarity=0.265 Sum_probs=74.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCC-CCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLAD-DHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPE 297 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp-~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~Pd 297 (701)
.+.|.||+|+|||+|+++|+..+.. ..+.+|.|+....-... +.. .+ ..... -.+......+++
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~--------~~~--~~--~~~~~---~~f~~~~~~~~d 196 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND--------LVD--SM--KEGKL---NEFREKYRKKVD 196 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH--------HHH--HH--hcccH---HHHHHHHHhcCC
Confidence 5899999999999999999987642 23567787764321100 000 00 00000 011112224799
Q ss_pred EEEEcCCCCcccHHH-HH-------HHHhcCCEEEEEE-cChhHHHHhcCcEEE-EeCCeEEEEecCcHHHHhh
Q 005344 298 TIIIDEIGTELEALA-AS-------TIAQRGVQLVGTA-HGMTIDNIVKNPSLQ-ILVGGIESVTLGDEEAKKR 361 (701)
Q Consensus 298 VIILDEPtsgLD~~a-~~-------~l~e~GvtVIiTT-Hd~~l~~~l~drvlv-l~~G~I~~V~lgd~~a~~r 361 (701)
+||+||+...++... .. .+.+.|.++|+++ |.......+.+++.. +..|-+..+...+.+.+..
T Consensus 197 vLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 197 VLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred EEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 999999987655332 11 2345677888877 777776666666553 4455565555556544443
No 490
>PRK09183 transposase/IS protein; Provisional
Probab=97.83 E-value=2.3e-05 Score=82.19 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=32.8
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
+..|++++|+||+|||||||+.+|+..... .|.+|.++..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~-~G~~v~~~~~ 138 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR-AGIKVRFTTA 138 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeH
Confidence 788999999999999999999999776543 4666766653
No 491
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.83 E-value=1.7e-05 Score=73.17 Aligned_cols=30 Identities=33% Similarity=0.549 Sum_probs=25.9
Q ss_pred eeccc---cccCCEEEEEcCCCCcHHHHHHHHH
Q 005344 209 IICDL---VEGGGSILVIGPPGVGKTTLIREIA 238 (701)
Q Consensus 209 ~L~dl---I~~GeiilIIGPNGSGKTTLLR~Ia 238 (701)
+|+++ +.+|++++|+||+|||||||++++.
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 45555 6678999999999999999999986
No 492
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.82 E-value=4.5e-05 Score=94.00 Aligned_cols=73 Identities=10% Similarity=-0.001 Sum_probs=63.2
Q ss_pred hccCCChhHHHHHHHHHHHcc--------CCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcC
Q 005344 274 RMQVPNVNMQHSVMIEAVENH--------MPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKN 338 (701)
Q Consensus 274 r~~v~s~G~qQRV~IArAL~~--------~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~d 338 (701)
...-.|+|++++++|+++|.+ +|++||+||||++||+.....+ ...|.+|+++||...+.+.+..
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~ 1025 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPV 1025 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccc
Confidence 445578999999999999996 8999999999999999998543 5679999999999999888888
Q ss_pred cEEEEeCC
Q 005344 339 PSLQILVG 346 (701)
Q Consensus 339 rvlvl~~G 346 (701)
++.+...+
T Consensus 1026 qi~V~k~~ 1033 (1047)
T PRK10246 1026 QIKVKKIN 1033 (1047)
T ss_pred eEEEEECC
Confidence 88777653
No 493
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.77 E-value=3.8e-05 Score=96.59 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=54.2
Q ss_pred CCChhHHH------HHHHHHHHccCCCEEEEcCCCCcccHHHHHHH----H--------hcCCEEEEEEcChhHHHHhcC
Q 005344 277 VPNVNMQH------SVMIEAVENHMPETIIIDEIGTELEALAASTI----A--------QRGVQLVGTAHGMTIDNIVKN 338 (701)
Q Consensus 277 v~s~G~qQ------RV~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~--------e~GvtVIiTTHd~~l~~~l~d 338 (701)
-.++|+++ |++||++++.+|++||+||||++||+.....+ . ..|.+||++||+..++..+|.
T Consensus 1199 ~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~ 1278 (1311)
T TIGR00606 1199 RCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGR 1278 (1311)
T ss_pred CCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhh
Confidence 46889999 99999999999999999999999999987543 1 238899999999999988874
No 494
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.75 E-value=2.1e-05 Score=88.87 Aligned_cols=45 Identities=13% Similarity=0.299 Sum_probs=36.3
Q ss_pred ceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 208 EIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 208 ~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
.+|+++ +.+|++++|+||+||||||||| +++..|+.|.. +.+++.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~-I~ldg~ 67 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYE-FFLDAT 67 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCE-EEECCE
Confidence 457776 7899999999999999999999 77787877732 555654
No 495
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.73 E-value=0.00011 Score=82.64 Aligned_cols=102 Identities=22% Similarity=0.336 Sum_probs=61.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~ 293 (701)
+..+..++|.||||||||||+++|++.+... .+.+... ++. ...+| .....-+-.+..+..
T Consensus 214 i~~p~gVLL~GPPGTGKT~LAraIA~el~~~----fi~V~~s-eL~------~k~~G--------e~~~~vr~lF~~A~~ 274 (438)
T PTZ00361 214 IKPPKGVILYGPPGTGKTLLAKAVANETSAT----FLRVVGS-ELI------QKYLG--------DGPKLVRELFRVAEE 274 (438)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCCC----EEEEecc-hhh------hhhcc--------hHHHHHHHHHHHHHh
Confidence 4566789999999999999999999987432 2333322 111 00011 111122344556667
Q ss_pred cCCCEEEEcCCC----------CcccHHHHHHH-----------HhcCCEEEEEEcChhHHH
Q 005344 294 HMPETIIIDEIG----------TELEALAASTI-----------AQRGVQLVGTAHGMTIDN 334 (701)
Q Consensus 294 ~~PdVIILDEPt----------sgLD~~a~~~l-----------~e~GvtVIiTTHd~~l~~ 334 (701)
+.|.+|++||+- ++.+....+.+ ...++.||++||..+.++
T Consensus 275 ~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LD 336 (438)
T PTZ00361 275 NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLD 336 (438)
T ss_pred CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhh
Confidence 899999999952 22333222211 134788999999877654
No 496
>PF13173 AAA_14: AAA domain
Probab=97.72 E-value=0.00028 Score=65.59 Aligned_cols=112 Identities=23% Similarity=0.339 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~P 296 (701)
+.+++|.||.|||||||++.++..+. ...++++++-..... ......+ -....+.. ....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~-------------~~~~~~~---~~~~~~~~-~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRD-------------RRLADPD---LLEYFLEL-IKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHH-------------HHHhhhh---hHHHHHHh-hccCC
Confidence 57899999999999999999997665 234456655332110 0000000 00111111 12367
Q ss_pred CEEEEcCCCCcccHHHH-HHHHhcC--CEEEEEEcChhHHHHhcCcEEEEeCCeEEE
Q 005344 297 ETIIIDEIGTELEALAA-STIAQRG--VQLVGTAHGMTIDNIVKNPSLQILVGGIES 350 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~-~~l~e~G--vtVIiTTHd~~l~~~l~drvlvl~~G~I~~ 350 (701)
.+|++||...--|.... +.+.+.+ ..+++|+........ .......|++..
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~---~~~~~l~gr~~~ 116 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSK---DIAESLAGRVIE 116 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhh---cccccCCCeEEE
Confidence 89999999865554433 3444444 799999886655422 222334565543
No 497
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.71 E-value=5.6e-05 Score=81.74 Aligned_cols=92 Identities=23% Similarity=0.237 Sum_probs=53.7
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc-cccCCCCC----CCCCchhhhccCCChhHHHHHHHH
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-IGGDGDVP----HSGIGRARRMQVPNVNMQHSVMIE 289 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-Ia~~~~ip----~~~ig~~rr~~v~s~G~qQRV~IA 289 (701)
.++++++|+||||+||||++..|++.+.+. |.+|.+++.... .+...... ..+++........+......-.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 357899999999999999999999999865 567888775421 11000000 001110000000111111122344
Q ss_pred HHHccCCCEEEEcCCCCc
Q 005344 290 AVENHMPETIIIDEIGTE 307 (701)
Q Consensus 290 rAL~~~PdVIILDEPtsg 307 (701)
.++..+-|++|+|=|+..
T Consensus 191 ~~~~~~~D~ViIDTaGr~ 208 (318)
T PRK10416 191 AAKARGIDVLIIDTAGRL 208 (318)
T ss_pred HHHhCCCCEEEEeCCCCC
Confidence 566788899999988853
No 498
>PRK00064 recF recombination protein F; Reviewed
Probab=97.69 E-value=0.00011 Score=80.43 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=59.5
Q ss_pred cCCChhHHHHHHHHHHHc---------cCCCEEEEcCCCCcccHHHHHHH----HhcCCEEEEEEcChhHHHHhc--CcE
Q 005344 276 QVPNVNMQHSVMIEAVEN---------HMPETIIIDEIGTELEALAASTI----AQRGVQLVGTAHGMTIDNIVK--NPS 340 (701)
Q Consensus 276 ~v~s~G~qQRV~IArAL~---------~~PdVIILDEPtsgLD~~a~~~l----~e~GvtVIiTTHd~~l~~~l~--drv 340 (701)
...|.|+|+++.+++.++ ..|++|++|||+++||+..+..+ .+.+.++++|+|+.+....++ .++
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~~i 351 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENAKI 351 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccCcE
Confidence 456889999999999885 68999999999999999988655 233679999999987766654 367
Q ss_pred EEEeCCeE
Q 005344 341 LQILVGGI 348 (701)
Q Consensus 341 lvl~~G~I 348 (701)
+.+..|++
T Consensus 352 ~~v~~G~i 359 (361)
T PRK00064 352 FHVEQGKI 359 (361)
T ss_pred EEEeCCEE
Confidence 88888876
No 499
>PRK06893 DNA replication initiation factor; Validated
Probab=97.68 E-value=0.00029 Score=72.24 Aligned_cols=87 Identities=10% Similarity=0.196 Sum_probs=51.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCC
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPE 297 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~Pd 297 (701)
-.+.|.||+|||||+|+++|+..+... |.++.|+.-.. .. .. .. . .+ ....+++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~-~~--------------~~-----~~--~-~~--~~~~~~d 93 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSK-SQ--------------YF-----SP--A-VL--ENLEQQD 93 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHH-hh--------------hh-----hH--H-HH--hhcccCC
Confidence 367899999999999999999876432 44455554321 00 00 00 0 01 1124789
Q ss_pred EEEEcCCCCcc-cHHHH-------HHHHhcCCEEEEEEcCh
Q 005344 298 TIIIDEIGTEL-EALAA-------STIAQRGVQLVGTAHGM 330 (701)
Q Consensus 298 VIILDEPtsgL-D~~a~-------~~l~e~GvtVIiTTHd~ 330 (701)
+|++||+.... +.... ..+.+.|.++|++|++.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 99999998632 22221 22345677776666654
No 500
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.66 E-value=0.00013 Score=86.88 Aligned_cols=72 Identities=28% Similarity=0.441 Sum_probs=48.4
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~ 293 (701)
+..+..++|.||||||||||++.|++.+. ..++.++.. ++. ... ......+-+-.+..+..
T Consensus 209 i~~~~giLL~GppGtGKT~laraia~~~~----~~~i~i~~~-~i~------~~~--------~g~~~~~l~~lf~~a~~ 269 (733)
T TIGR01243 209 IEPPKGVLLYGPPGTGKTLLAKAVANEAG----AYFISINGP-EIM------SKY--------YGESEERLREIFKEAEE 269 (733)
T ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhC----CeEEEEecH-HHh------ccc--------ccHHHHHHHHHHHHHHh
Confidence 66778999999999999999999999763 334445433 111 000 11112233445666777
Q ss_pred cCCCEEEEcCC
Q 005344 294 HMPETIIIDEI 304 (701)
Q Consensus 294 ~~PdVIILDEP 304 (701)
..|.+|++||+
T Consensus 270 ~~p~il~iDEi 280 (733)
T TIGR01243 270 NAPSIIFIDEI 280 (733)
T ss_pred cCCcEEEeehh
Confidence 89999999995
Done!