Query 005344
Match_columns 701
No_of_seqs 522 out of 3883
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 22:41:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 100.0 8.4E-28 2.9E-32 249.7 17.6 164 187-358 5-230 (275)
2 3tui_C Methionine import ATP-b 100.0 1.7E-27 5.7E-32 256.9 19.1 170 183-357 18-249 (366)
3 3fvq_A Fe(3+) IONS import ATP- 99.9 2E-27 6.8E-32 255.7 18.2 160 189-357 4-224 (359)
4 4g1u_C Hemin import ATP-bindin 99.9 5E-27 1.7E-31 242.4 18.2 162 188-358 10-234 (266)
5 3rlf_A Maltose/maltodextrin im 99.9 5E-27 1.7E-31 254.4 18.0 160 189-357 3-219 (381)
6 1b0u_A Histidine permease; ABC 99.9 6.7E-27 2.3E-31 240.6 17.6 161 187-356 4-237 (262)
7 3tif_A Uncharacterized ABC tra 99.9 5.4E-27 1.9E-31 237.5 16.7 159 189-349 1-224 (235)
8 1ji0_A ABC transporter; ATP bi 99.9 8.7E-27 3E-31 236.5 17.6 163 187-356 4-223 (240)
9 2olj_A Amino acid ABC transpor 99.9 1.1E-26 3.8E-31 239.7 18.1 159 189-356 24-243 (263)
10 2pcj_A ABC transporter, lipopr 99.9 8.1E-27 2.8E-31 234.4 16.5 153 188-348 3-217 (224)
11 1vpl_A ABC transporter, ATP-bi 99.9 1.5E-26 5E-31 237.8 18.0 160 188-356 14-230 (256)
12 1v43_A Sugar-binding transport 99.9 2E-26 6.9E-31 248.9 18.2 167 182-357 4-227 (372)
13 2yyz_A Sugar ABC transporter, 99.9 3.8E-26 1.3E-30 245.8 19.1 160 189-357 3-219 (359)
14 1g6h_A High-affinity branched- 99.9 2.3E-26 7.8E-31 235.6 16.5 155 188-349 6-232 (257)
15 1z47_A CYSA, putative ABC-tran 99.9 2.8E-26 9.4E-31 246.5 17.8 163 185-356 10-230 (355)
16 2onk_A Molybdate/tungstate ABC 99.9 4.8E-26 1.6E-30 231.8 17.7 156 189-356 1-211 (240)
17 1g29_1 MALK, maltose transport 99.9 3.9E-26 1.3E-30 246.6 17.6 160 189-357 3-225 (372)
18 2it1_A 362AA long hypothetical 99.9 4.4E-26 1.5E-30 245.5 17.4 160 189-357 3-219 (362)
19 2yz2_A Putative ABC transporte 99.9 6.7E-26 2.3E-30 233.4 17.0 166 189-356 2-222 (266)
20 1oxx_K GLCV, glucose, ABC tran 99.9 4.4E-26 1.5E-30 244.5 15.9 159 189-356 3-225 (353)
21 3d31_A Sulfate/molybdate ABC t 99.9 6.2E-26 2.1E-30 243.1 16.6 158 189-356 1-212 (348)
22 2ihy_A ABC transporter, ATP-bi 99.9 6.3E-26 2.2E-30 235.8 14.7 163 185-356 17-247 (279)
23 2nq2_C Hypothetical ABC transp 99.9 1.3E-25 4.5E-30 230.0 16.1 155 189-347 4-206 (253)
24 2ff7_A Alpha-hemolysin translo 99.9 2.2E-25 7.4E-30 227.5 17.1 162 189-356 7-227 (247)
25 2d2e_A SUFC protein; ABC-ATPas 99.9 1.7E-25 5.7E-30 228.4 15.0 159 189-356 3-228 (250)
26 2pze_A Cystic fibrosis transme 99.9 3.3E-25 1.1E-29 223.4 16.8 162 189-356 6-213 (229)
27 2ixe_A Antigen peptide transpo 99.9 2.4E-25 8.1E-30 230.2 16.1 164 188-356 15-240 (271)
28 1mv5_A LMRA, multidrug resista 99.9 2.5E-25 8.4E-30 226.0 14.5 160 189-357 1-222 (243)
29 2zu0_C Probable ATP-dependent 99.9 3.5E-25 1.2E-29 228.4 15.4 159 186-349 17-244 (267)
30 3nh6_A ATP-binding cassette SU 99.9 4.5E-25 1.5E-29 232.7 16.0 163 188-357 52-273 (306)
31 2cbz_A Multidrug resistance-as 99.9 4.6E-25 1.6E-29 223.6 15.4 162 189-356 3-212 (237)
32 2pjz_A Hypothetical protein ST 99.9 2.3E-24 7.9E-29 222.4 17.9 161 189-356 1-210 (263)
33 2ghi_A Transport protein; mult 99.9 1.7E-24 5.7E-29 222.5 15.7 163 188-356 16-237 (260)
34 2qi9_C Vitamin B12 import ATP- 99.9 1.8E-24 6.2E-29 221.4 15.5 156 189-356 4-217 (249)
35 1sgw_A Putative ABC transporte 99.9 4E-25 1.4E-29 221.7 7.6 155 187-348 8-210 (214)
36 3gd7_A Fusion complex of cysti 99.9 2E-24 6.9E-29 234.6 13.1 161 189-358 19-239 (390)
37 2bbs_A Cystic fibrosis transme 99.9 2.8E-23 9.4E-28 217.3 13.9 158 189-356 40-242 (290)
38 3b5x_A Lipid A export ATP-bind 99.9 2.2E-22 7.6E-27 227.5 18.8 163 188-356 340-562 (582)
39 4a82_A Cystic fibrosis transme 99.9 6.5E-23 2.2E-27 231.8 14.4 164 188-357 338-560 (578)
40 3qf4_B Uncharacterized ABC tra 99.9 7.9E-23 2.7E-27 232.1 14.6 163 189-358 354-575 (598)
41 3qf4_A ABC transporter, ATP-bi 99.9 1.1E-22 3.6E-27 230.7 14.5 165 188-358 340-563 (587)
42 3b60_A Lipid A export ATP-bind 99.9 2.3E-22 8E-27 227.3 15.6 163 188-356 340-562 (582)
43 3ozx_A RNAse L inhibitor; ATP 99.9 6.6E-22 2.3E-26 222.7 17.0 155 186-346 266-462 (538)
44 2yl4_A ATP-binding cassette SU 99.9 6.1E-22 2.1E-26 224.5 16.4 156 190-348 342-559 (595)
45 1yqt_A RNAse L inhibitor; ATP- 99.9 1.5E-21 5.2E-26 219.6 17.6 156 187-348 285-482 (538)
46 1yqt_A RNAse L inhibitor; ATP- 99.9 7.2E-22 2.5E-26 222.2 13.7 153 190-346 21-234 (538)
47 3bk7_A ABC transporter ATP-bin 99.9 2.3E-21 7.8E-26 221.2 16.6 156 187-348 355-552 (607)
48 3bk7_A ABC transporter ATP-bin 99.9 1.5E-21 5E-26 222.8 14.2 150 193-346 95-304 (607)
49 3j16_B RLI1P; ribosome recycli 99.8 4.4E-21 1.5E-25 218.9 13.3 142 214-357 375-555 (608)
50 3j16_B RLI1P; ribosome recycli 99.8 3.3E-21 1.1E-25 220.0 11.0 150 194-347 82-298 (608)
51 2iw3_A Elongation factor 3A; a 99.8 4.3E-21 1.5E-25 228.1 10.2 72 277-348 901-976 (986)
52 3ozx_A RNAse L inhibitor; ATP 99.8 1.1E-20 3.8E-25 212.7 12.9 150 194-347 4-214 (538)
53 3g5u_A MCG1178, multidrug resi 99.8 1.8E-20 6E-25 229.4 14.0 163 189-357 1030-1254(1284)
54 3g5u_A MCG1178, multidrug resi 99.8 1.5E-20 5.3E-25 229.8 12.9 165 188-357 386-609 (1284)
55 2iw3_A Elongation factor 3A; a 99.8 9.3E-20 3.2E-24 216.8 14.7 156 189-349 435-624 (986)
56 4f4c_A Multidrug resistance pr 99.8 6.2E-20 2.1E-24 225.1 13.2 162 189-357 1076-1300(1321)
57 2pt7_A CAG-ALFA; ATPase, prote 99.8 5.5E-20 1.9E-24 195.1 10.1 222 113-347 33-291 (330)
58 4f4c_A Multidrug resistance pr 99.8 1.5E-19 5E-24 221.8 13.8 164 189-357 415-637 (1321)
59 3ux8_A Excinuclease ABC, A sub 99.8 1.9E-19 6.4E-24 206.6 13.8 79 277-358 202-295 (670)
60 3ux8_A Excinuclease ABC, A sub 99.7 7E-18 2.4E-22 193.6 13.5 78 277-357 543-636 (670)
61 3jvv_A Twitching mobility prot 99.7 9E-18 3.1E-22 180.3 10.2 216 123-346 13-246 (356)
62 4gp7_A Metallophosphoesterase; 99.7 6.6E-19 2.3E-23 168.6 0.4 121 214-336 6-165 (171)
63 4aby_A DNA repair protein RECN 99.7 2.4E-16 8E-21 169.1 16.2 71 278-349 296-378 (415)
64 2vf7_A UVRA2, excinuclease ABC 99.7 9E-17 3.1E-21 189.1 12.4 76 278-356 731-822 (842)
65 2npi_A Protein CLP1; CLP1-PCF1 99.7 1.6E-17 5.6E-22 183.9 2.5 140 214-358 135-335 (460)
66 3pih_A Uvrabc system protein A 99.6 6.4E-16 2.2E-20 183.3 15.2 79 277-358 805-899 (916)
67 1ye8_A Protein THEP1, hypothet 99.6 2.1E-16 7.4E-21 153.5 8.0 126 219-349 2-158 (178)
68 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 6.7E-16 2.3E-20 165.6 12.6 70 278-348 280-362 (365)
69 3b85_A Phosphate starvation-in 99.6 1E-17 3.5E-22 167.0 -1.5 125 206-335 12-163 (208)
70 2r6f_A Excinuclease ABC subuni 99.6 9E-16 3.1E-20 182.0 14.5 76 278-356 846-937 (972)
71 2ygr_A Uvrabc system protein A 99.6 1.1E-15 3.8E-20 181.6 14.7 76 278-356 864-955 (993)
72 2eyu_A Twitching motility prot 99.6 6.2E-16 2.1E-20 159.0 5.2 125 208-344 15-146 (261)
73 2ehv_A Hypothetical protein PH 99.6 1.7E-15 6E-20 149.4 5.4 134 209-344 22-206 (251)
74 2oap_1 GSPE-2, type II secreti 99.5 3.7E-14 1.3E-18 159.0 12.4 212 116-333 135-370 (511)
75 2ewv_A Twitching motility prot 99.5 3.5E-15 1.2E-19 160.6 3.9 209 123-343 25-256 (372)
76 1tf7_A KAIC; homohexamer, hexa 99.5 1.1E-14 3.6E-19 162.8 6.5 132 214-347 278-444 (525)
77 1cr0_A DNA primase/helicase; R 99.5 7.6E-14 2.6E-18 143.5 10.9 139 209-348 24-237 (296)
78 3thx_A DNA mismatch repair pro 99.5 8.2E-14 2.8E-18 165.8 10.6 134 207-350 649-804 (934)
79 4a74_A DNA repair and recombin 99.5 7.7E-14 2.7E-18 136.0 8.6 136 212-347 20-201 (231)
80 2o8b_B DNA mismatch repair pro 99.4 9.7E-14 3.3E-18 166.6 9.9 153 187-349 748-930 (1022)
81 1e69_A Chromosome segregation 99.4 5.9E-13 2E-17 139.7 14.1 73 278-351 220-304 (322)
82 3b9q_A Chloroplast SRP recepto 99.4 9.4E-14 3.2E-18 145.8 7.6 131 214-348 97-284 (302)
83 2w0m_A SSO2452; RECA, SSPF, un 99.4 1.1E-13 3.8E-18 134.3 7.5 132 214-346 20-192 (235)
84 2gza_A Type IV secretion syste 99.4 1.8E-13 6.1E-18 146.6 8.0 222 116-346 29-302 (361)
85 1tq4_A IIGP1, interferon-induc 99.4 7.8E-15 2.7E-19 160.6 -3.6 123 218-340 70-247 (413)
86 1znw_A Guanylate kinase, GMP k 99.4 3.2E-15 1.1E-19 146.5 -6.6 139 206-344 8-202 (207)
87 2og2_A Putative signal recogni 99.4 7.2E-13 2.5E-17 142.6 9.1 131 214-347 154-340 (359)
88 3thx_B DNA mismatch repair pro 99.4 8.9E-13 3E-17 156.7 9.7 119 207-334 660-800 (918)
89 1ewq_A DNA mismatch repair pro 99.3 8.1E-13 2.8E-17 154.5 8.7 123 207-334 566-702 (765)
90 3qkt_A DNA double-strand break 99.3 2.3E-12 7.8E-17 136.3 10.2 66 278-344 249-327 (339)
91 2cvh_A DNA repair and recombin 99.3 7.3E-12 2.5E-16 121.3 9.6 129 214-346 17-185 (220)
92 1tf7_A KAIC; homohexamer, hexa 99.3 4.1E-12 1.4E-16 142.0 8.7 138 207-346 25-210 (525)
93 2v9p_A Replication protein E1; 99.2 1.3E-14 4.5E-19 153.0 -12.5 139 190-356 102-261 (305)
94 1n0w_A DNA repair protein RAD5 99.2 3.2E-11 1.1E-15 118.5 9.5 121 214-334 21-178 (243)
95 1wb9_A DNA mismatch repair pro 99.2 1E-11 3.5E-16 145.9 6.6 138 207-349 595-748 (800)
96 3aez_A Pantothenate kinase; tr 99.2 6.6E-13 2.3E-17 140.0 -4.1 97 214-310 87-209 (312)
97 1pzn_A RAD51, DNA repair and r 99.2 4.2E-11 1.5E-15 127.8 8.4 120 214-333 128-289 (349)
98 2i3b_A HCR-ntpase, human cance 99.1 3.2E-12 1.1E-16 125.6 -0.8 133 217-355 1-172 (189)
99 3sop_A Neuronal-specific septi 99.1 1.3E-11 4.5E-16 127.4 3.3 110 219-332 4-152 (270)
100 2obl_A ESCN; ATPase, hydrolase 99.1 1.7E-12 5.7E-17 139.0 -4.1 143 189-348 45-244 (347)
101 3ec2_A DNA replication protein 99.1 1.7E-11 5.8E-16 116.7 2.4 101 214-330 35-143 (180)
102 1z6g_A Guanylate kinase; struc 99.1 1.1E-12 3.7E-17 130.4 -6.8 100 209-313 12-163 (218)
103 2dpy_A FLII, flagellum-specifi 99.1 1.8E-12 6.2E-17 142.7 -5.8 142 189-348 131-333 (438)
104 2cpm_A Sperm-associated antige 99.1 1.2E-10 4.2E-15 103.3 6.9 68 590-657 4-74 (94)
105 1nlf_A Regulatory protein REPA 99.1 7.6E-11 2.6E-15 120.5 6.1 117 214-333 27-184 (279)
106 2kjq_A DNAA-related protein; s 99.1 1.1E-10 3.8E-15 110.0 6.6 82 216-329 35-124 (149)
107 1f2t_B RAD50 ABC-ATPase; DNA d 99.0 4.6E-10 1.6E-14 106.5 9.6 69 275-344 55-136 (148)
108 1rj9_A FTSY, signal recognitio 99.0 8.4E-10 2.9E-14 116.0 10.3 113 216-330 101-258 (304)
109 2jeo_A Uridine-cytidine kinase 99.0 8.1E-11 2.8E-15 118.3 1.1 131 206-340 11-176 (245)
110 1p9r_A General secretion pathw 98.9 3E-10 1E-14 124.5 4.3 114 209-331 158-272 (418)
111 1pui_A ENGB, probable GTP-bind 98.9 4.5E-10 1.5E-14 107.9 2.1 122 189-316 3-189 (210)
112 2qnr_A Septin-2, protein NEDD5 98.8 2.7E-10 9.3E-15 119.0 -1.4 126 193-331 2-168 (301)
113 3pih_A Uvrabc system protein A 98.8 4.4E-09 1.5E-13 125.1 8.1 80 276-358 463-557 (916)
114 3lda_A DNA repair protein RAD5 98.8 8.2E-09 2.8E-13 112.6 8.9 116 214-330 175-328 (400)
115 1s96_A Guanylate kinase, GMP k 98.8 1.4E-08 4.7E-13 101.8 9.5 112 214-335 13-145 (219)
116 2qag_C Septin-7; cell cycle, c 98.7 1.3E-09 4.3E-14 119.6 0.6 134 189-331 11-178 (418)
117 3szr_A Interferon-induced GTP- 98.7 5.5E-09 1.9E-13 119.3 4.8 106 219-333 47-199 (608)
118 3asz_A Uridine kinase; cytidin 98.7 3.9E-11 1.3E-15 116.6 -11.2 112 215-330 4-161 (211)
119 4ad8_A DNA repair protein RECN 98.7 1.5E-08 5E-13 113.1 8.0 67 278-346 398-473 (517)
120 2px0_A Flagellar biosynthesis 98.7 4.7E-09 1.6E-13 109.8 3.2 127 215-348 103-244 (296)
121 2ygr_A Uvrabc system protein A 98.7 2.2E-08 7.4E-13 119.7 9.1 80 276-358 520-614 (993)
122 2r6f_A Excinuclease ABC subuni 98.7 1.8E-08 6.2E-13 120.0 7.5 78 276-356 503-595 (972)
123 1lw7_A Transcriptional regulat 98.7 1.5E-09 5.2E-14 115.6 -1.7 32 214-245 165-198 (365)
124 3e70_C DPA, signal recognition 98.6 6.2E-08 2.1E-12 102.9 9.5 131 215-347 127-305 (328)
125 2vf7_A UVRA2, excinuclease ABC 98.6 2.9E-08 9.9E-13 117.3 7.0 78 276-356 378-470 (842)
126 1sxj_E Activator 1 40 kDa subu 98.6 6.9E-08 2.4E-12 100.5 8.8 121 219-343 38-188 (354)
127 2dr3_A UPF0273 protein PH0284; 98.6 7.9E-08 2.7E-12 94.3 8.6 130 214-344 20-195 (247)
128 1htw_A HI0065; nucleotide-bind 98.6 1.5E-08 5.1E-13 96.9 1.9 45 208-255 21-68 (158)
129 2zr9_A Protein RECA, recombina 98.5 2.3E-07 7.7E-12 99.3 9.2 115 214-331 58-199 (349)
130 3kta_B Chromosome segregation 98.5 4.3E-07 1.5E-11 88.2 9.4 73 275-348 62-146 (173)
131 2o5v_A DNA replication and rep 98.4 2.5E-07 8.4E-12 99.6 8.0 74 277-356 265-351 (359)
132 2yhs_A FTSY, cell division pro 98.4 3E-07 1E-11 103.0 8.0 38 214-252 290-327 (503)
133 1vma_A Cell division protein F 98.4 1.2E-07 4.1E-12 99.9 4.3 89 214-306 101-197 (306)
134 1ls1_A Signal recognition part 98.4 2.8E-07 9.7E-12 96.1 6.3 100 216-316 97-202 (295)
135 3auy_A DNA double-strand break 98.3 9.3E-07 3.2E-11 94.5 9.5 75 276-351 279-367 (371)
136 2ce7_A Cell division protein F 98.3 9.5E-07 3.2E-11 98.4 8.5 97 218-333 50-167 (476)
137 2r6a_A DNAB helicase, replicat 98.3 6.5E-07 2.2E-11 98.3 6.7 133 214-348 200-401 (454)
138 1sq5_A Pantothenate kinase; P- 98.2 8.1E-08 2.8E-12 100.3 -3.1 33 215-247 78-112 (308)
139 3euj_A Chromosome partition pr 98.2 9.7E-07 3.3E-11 98.6 5.1 45 208-255 18-65 (483)
140 3hr8_A Protein RECA; alpha and 98.2 2.8E-06 9.7E-11 91.4 8.4 41 214-255 58-98 (356)
141 1fnn_A CDC6P, cell division co 98.2 2.5E-06 8.4E-11 89.1 7.6 117 219-336 46-175 (389)
142 1w1w_A Structural maintenance 98.1 2.9E-06 1E-10 92.1 8.1 68 276-344 332-410 (430)
143 1zp6_A Hypothetical protein AT 98.1 1.4E-06 4.9E-11 82.7 5.0 38 214-255 6-43 (191)
144 3c8u_A Fructokinase; YP_612366 98.1 8.2E-07 2.8E-11 86.8 2.7 40 214-254 19-58 (208)
145 3tr0_A Guanylate kinase, GMP k 98.1 1.6E-06 5.5E-11 83.1 3.9 29 214-242 4-32 (205)
146 2xau_A PRE-mRNA-splicing facto 98.1 1.2E-06 4.1E-11 102.7 3.4 139 209-347 101-270 (773)
147 2qm8_A GTPase/ATPase; G protei 98.0 1.5E-07 5.1E-12 99.9 -4.7 53 190-247 30-85 (337)
148 1qhl_A Protein (cell division 98.0 2.7E-07 9.1E-12 93.4 -3.3 57 185-254 5-62 (227)
149 2x8a_A Nuclear valosin-contain 98.0 6.2E-06 2.1E-10 84.8 6.8 79 209-306 35-114 (274)
150 3b9p_A CG5977-PA, isoform A; A 98.0 1.3E-05 4.5E-10 81.6 9.1 73 216-307 53-125 (297)
151 1udx_A The GTP-binding protein 98.0 1.7E-06 5.9E-11 94.8 2.7 108 214-327 154-305 (416)
152 2ius_A DNA translocase FTSK; n 97.9 1.3E-05 4.5E-10 90.1 8.6 54 214-267 164-221 (512)
153 3lnc_A Guanylate kinase, GMP k 97.9 3.1E-06 1.1E-10 83.6 3.0 29 214-242 24-53 (231)
154 3a00_A Guanylate kinase, GMP k 97.9 3.7E-06 1.3E-10 80.7 3.5 31 217-247 1-31 (186)
155 1lvg_A Guanylate kinase, GMP k 97.9 3.4E-06 1.2E-10 82.2 3.0 28 215-242 2-29 (198)
156 2qby_A CDC6 homolog 1, cell di 97.9 2.3E-06 7.8E-11 88.7 1.7 39 216-254 44-84 (386)
157 3h4m_A Proteasome-activating n 97.9 1.8E-05 6.1E-10 79.9 7.7 72 215-305 49-120 (285)
158 3k1j_A LON protease, ATP-depen 97.9 3.6E-06 1.2E-10 95.7 2.6 42 206-247 46-90 (604)
159 3uie_A Adenylyl-sulfate kinase 97.9 4E-06 1.4E-10 81.2 2.5 41 214-255 22-62 (200)
160 3cf0_A Transitional endoplasmi 97.9 1.8E-05 6.2E-10 81.8 7.5 73 214-305 46-118 (301)
161 2j41_A Guanylate kinase; GMP, 97.9 6.1E-06 2.1E-10 79.0 3.6 31 214-244 3-33 (207)
162 3nwj_A ATSK2; P loop, shikimat 97.8 3.2E-06 1.1E-10 86.5 1.3 50 189-242 17-73 (250)
163 2z4s_A Chromosomal replication 97.8 4.5E-06 1.5E-10 91.5 2.5 99 217-330 130-237 (440)
164 1ypw_A Transitional endoplasmi 97.8 2.2E-05 7.5E-10 92.5 8.4 106 209-333 229-353 (806)
165 2qag_B Septin-6, protein NEDD5 97.8 3.4E-06 1.2E-10 92.9 0.5 44 191-241 18-66 (427)
166 2b8t_A Thymidine kinase; deoxy 97.8 6E-05 2E-09 76.1 9.3 111 215-332 10-128 (223)
167 1kgd_A CASK, peripheral plasma 97.8 1.2E-05 4.2E-10 76.7 4.0 28 216-243 4-31 (180)
168 3kl4_A SRP54, signal recogniti 97.8 1.4E-05 4.9E-10 88.0 4.7 95 216-316 96-203 (433)
169 3kta_A Chromosome segregation 97.7 2.7E-05 9.4E-10 73.5 5.8 33 214-247 24-56 (182)
170 2r8r_A Sensor protein; KDPD, P 97.7 1.7E-05 5.9E-10 80.6 4.5 105 219-328 8-125 (228)
171 3bos_A Putative DNA replicatio 97.7 3.1E-05 1.1E-09 74.9 6.0 38 216-254 51-88 (242)
172 4b4t_L 26S protease subunit RP 97.7 6.7E-05 2.3E-09 82.8 9.4 73 214-305 212-284 (437)
173 1u0l_A Probable GTPase ENGC; p 97.7 1.3E-05 4.6E-10 83.3 3.7 34 214-247 166-199 (301)
174 1zu4_A FTSY; GTPase, signal re 97.7 2.7E-05 9.3E-10 82.3 5.9 41 214-255 102-142 (320)
175 1ixz_A ATP-dependent metallopr 97.7 2.2E-05 7.5E-10 78.4 5.0 23 220-242 52-74 (254)
176 1v5w_A DMC1, meiotic recombina 97.7 5.7E-05 1.9E-09 80.1 8.4 43 214-256 119-166 (343)
177 4eun_A Thermoresistant glucoki 97.7 1.7E-05 5.7E-10 76.8 3.9 35 215-255 27-61 (200)
178 2z43_A DNA repair and recombin 97.7 4.7E-05 1.6E-09 79.8 7.4 118 214-331 104-259 (324)
179 1iy2_A ATP-dependent metallopr 97.7 2.2E-05 7.6E-10 79.8 4.7 23 220-242 76-98 (278)
180 4b4t_J 26S protease regulatory 97.7 5.6E-05 1.9E-09 82.7 8.1 72 215-305 180-251 (405)
181 2bdt_A BH3686; alpha-beta prot 97.7 1.8E-05 6.1E-10 75.4 3.5 33 217-254 2-34 (189)
182 4b4t_K 26S protease regulatory 97.6 8.2E-05 2.8E-09 81.9 8.4 71 215-304 204-274 (428)
183 1lv7_A FTSH; alpha/beta domain 97.6 0.00011 3.6E-09 73.5 8.5 68 218-304 46-113 (257)
184 4a1f_A DNAB helicase, replicat 97.6 5.1E-05 1.7E-09 81.1 6.5 114 214-328 43-164 (338)
185 1u94_A RECA protein, recombina 97.6 0.0001 3.5E-09 79.1 8.9 113 214-330 60-200 (356)
186 2bbw_A Adenylate kinase 4, AK4 97.6 1.6E-05 5.4E-10 79.5 2.3 32 216-247 26-60 (246)
187 1l8q_A Chromosomal replication 97.6 2.8E-05 9.5E-10 80.5 4.1 37 217-254 37-73 (324)
188 3tau_A Guanylate kinase, GMP k 97.6 3.2E-05 1.1E-09 75.6 4.3 29 215-243 6-34 (208)
189 4fcw_A Chaperone protein CLPB; 97.6 2.9E-05 9.9E-10 79.1 3.9 35 218-253 48-82 (311)
190 1xwi_A SKD1 protein; VPS4B, AA 97.6 0.00015 5E-09 76.1 9.2 72 216-305 44-115 (322)
191 2qz4_A Paraplegin; AAA+, SPG7, 97.6 0.00011 3.8E-09 72.7 7.7 72 216-306 38-109 (262)
192 3d8b_A Fidgetin-like protein 1 97.6 0.00019 6.6E-09 76.1 10.0 70 216-304 116-185 (357)
193 4b4t_H 26S protease regulatory 97.6 0.00011 3.9E-09 81.6 8.2 73 214-305 240-312 (467)
194 4b4t_I 26S protease regulatory 97.5 0.00012 4E-09 80.8 7.8 73 214-305 213-285 (437)
195 2rcn_A Probable GTPase ENGC; Y 97.5 3.8E-05 1.3E-09 82.7 3.8 34 214-247 212-246 (358)
196 1kag_A SKI, shikimate kinase I 97.5 4E-05 1.4E-09 71.5 3.3 27 216-242 3-29 (173)
197 3io5_A Recombination and repai 97.5 0.00032 1.1E-08 74.8 10.5 116 214-331 26-173 (333)
198 1jbk_A CLPB protein; beta barr 97.5 0.00017 5.9E-09 66.4 7.4 27 216-242 42-68 (195)
199 1t9h_A YLOQ, probable GTPase E 97.5 1.9E-05 6.6E-10 83.3 1.1 34 214-247 170-203 (307)
200 3cr8_A Sulfate adenylyltranfer 97.5 3.5E-05 1.2E-09 87.4 3.2 44 214-257 366-409 (552)
201 2yv5_A YJEQ protein; hydrolase 97.5 5E-05 1.7E-09 79.2 3.9 33 214-247 162-194 (302)
202 4e22_A Cytidylate kinase; P-lo 97.5 3E-05 1E-09 78.4 1.9 35 210-244 20-57 (252)
203 3m6a_A ATP-dependent protease 97.5 3.2E-05 1.1E-09 87.0 2.3 29 216-244 107-135 (543)
204 1rz3_A Hypothetical protein rb 97.5 5.4E-05 1.9E-09 73.5 3.4 38 214-252 19-56 (201)
205 2e87_A Hypothetical protein PH 97.4 0.00027 9.2E-09 75.0 8.9 111 216-331 166-293 (357)
206 4b4t_M 26S protease regulatory 97.4 0.00015 5.3E-09 79.9 7.3 71 215-304 213-283 (434)
207 1knq_A Gluconate kinase; ALFA/ 97.4 5E-05 1.7E-09 71.3 2.9 34 216-255 7-40 (175)
208 2vp4_A Deoxynucleoside kinase; 97.4 7.9E-05 2.7E-09 74.0 3.9 27 214-240 17-43 (230)
209 3vaa_A Shikimate kinase, SK; s 97.4 6.5E-05 2.2E-09 72.6 3.2 34 208-241 13-49 (199)
210 1in4_A RUVB, holliday junction 97.4 2.4E-05 8.1E-10 82.2 -0.4 25 218-242 52-76 (334)
211 1xp8_A RECA protein, recombina 97.4 0.00035 1.2E-08 75.2 8.7 41 214-255 71-111 (366)
212 1w1w_A Structural maintenance 97.3 9.3E-05 3.2E-09 80.3 3.8 32 214-245 23-54 (430)
213 2p65_A Hypothetical protein PF 97.3 0.00021 7E-09 66.1 5.5 27 217-243 43-69 (187)
214 3syl_A Protein CBBX; photosynt 97.3 0.0006 2.1E-08 69.4 9.5 26 217-242 67-92 (309)
215 2f1r_A Molybdopterin-guanine d 97.3 3.1E-05 1.1E-09 74.8 -0.1 27 218-244 3-29 (171)
216 1d2n_A N-ethylmaleimide-sensit 97.3 0.00037 1.3E-08 70.2 7.8 70 217-304 64-133 (272)
217 1njg_A DNA polymerase III subu 97.3 0.00017 5.8E-09 68.6 4.9 25 219-243 47-71 (250)
218 1nij_A Hypothetical protein YJ 97.3 7.2E-05 2.5E-09 78.4 2.4 32 218-252 5-36 (318)
219 3tqc_A Pantothenate kinase; bi 97.3 9.1E-05 3.1E-09 78.6 3.1 35 219-254 94-130 (321)
220 2pez_A Bifunctional 3'-phospho 97.3 0.0001 3.6E-09 69.6 3.1 38 216-254 4-41 (179)
221 2orw_A Thymidine kinase; TMTK, 97.3 0.00026 8.8E-09 68.6 5.8 108 216-331 2-114 (184)
222 3cf2_A TER ATPase, transitiona 97.2 0.00042 1.4E-08 81.8 8.3 101 214-333 235-353 (806)
223 3eie_A Vacuolar protein sortin 97.2 0.00023 7.8E-09 74.1 5.4 71 216-305 50-120 (322)
224 3n70_A Transport activator; si 97.2 0.00063 2.2E-08 62.7 7.8 88 214-328 21-114 (145)
225 2qp9_X Vacuolar protein sortin 97.2 0.00022 7.6E-09 75.7 5.0 71 217-306 84-154 (355)
226 2zan_A Vacuolar protein sortin 97.2 0.00047 1.6E-08 75.5 7.8 73 216-306 166-238 (444)
227 3hu3_A Transitional endoplasmi 97.2 0.00057 1.9E-08 76.2 8.5 71 215-304 236-306 (489)
228 3bh0_A DNAB-like replicative h 97.2 0.00033 1.1E-08 73.3 6.0 114 214-328 65-189 (315)
229 3ney_A 55 kDa erythrocyte memb 97.2 0.00018 6.2E-09 71.3 3.9 28 215-242 17-44 (197)
230 2qt1_A Nicotinamide riboside k 97.2 0.00018 6E-09 69.6 3.5 37 214-255 18-54 (207)
231 2dhr_A FTSH; AAA+ protein, hex 97.2 0.00024 8.2E-09 79.6 4.9 24 219-242 66-89 (499)
232 1m7g_A Adenylylsulfate kinase; 97.2 0.00012 4E-09 71.4 2.1 41 214-254 22-62 (211)
233 3dm5_A SRP54, signal recogniti 97.1 0.00096 3.3E-08 73.8 9.4 91 217-313 100-201 (443)
234 1xx6_A Thymidine kinase; NESG, 97.1 0.0008 2.7E-08 66.1 7.8 109 215-331 6-119 (191)
235 3llm_A ATP-dependent RNA helic 97.1 0.00072 2.5E-08 67.0 7.5 26 214-239 73-98 (235)
236 3vfd_A Spastin; ATPase, microt 97.1 0.00082 2.8E-08 71.7 8.2 71 216-305 147-217 (389)
237 2r62_A Cell division protease 97.1 0.00019 6.3E-09 71.9 2.9 24 218-241 45-68 (268)
238 3t15_A Ribulose bisphosphate c 97.1 0.00024 8.2E-09 73.4 3.8 24 218-241 37-60 (293)
239 2qgz_A Helicase loader, putati 97.1 0.00032 1.1E-08 73.3 4.8 38 217-254 152-189 (308)
240 2q6t_A DNAB replication FORK h 97.1 0.0012 4.2E-08 72.1 9.5 111 214-328 197-318 (444)
241 1svm_A Large T antigen; AAA+ f 97.1 0.00021 7.2E-09 77.4 2.9 34 208-241 157-193 (377)
242 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00063 2.2E-08 72.6 6.3 27 214-240 120-146 (331)
243 2chg_A Replication factor C sm 97.0 0.0016 5.6E-08 61.2 8.5 23 219-241 40-62 (226)
244 1cke_A CK, MSSA, protein (cyti 97.0 0.00028 9.6E-09 68.6 3.2 25 217-241 5-29 (227)
245 2v1u_A Cell division control p 97.0 0.00046 1.6E-08 71.5 4.9 39 216-254 43-86 (387)
246 3co5_A Putative two-component 97.0 0.00066 2.3E-08 62.5 5.4 29 214-242 24-52 (143)
247 2dy1_A Elongation factor G; tr 97.0 0.00043 1.5E-08 79.8 5.0 115 214-332 6-138 (665)
248 1oix_A RAS-related protein RAB 97.0 0.0004 1.4E-08 66.2 3.8 25 219-243 31-55 (191)
249 3pvs_A Replication-associated 97.0 0.0013 4.4E-08 72.5 8.2 30 213-242 44-75 (447)
250 1ni3_A YCHF GTPase, YCHF GTP-b 96.9 0.00045 1.6E-08 75.2 4.4 52 295-348 139-202 (392)
251 2qor_A Guanylate kinase; phosp 96.9 0.00043 1.5E-08 67.0 3.2 29 214-242 9-37 (204)
252 1jjv_A Dephospho-COA kinase; P 96.9 0.00047 1.6E-08 66.4 3.4 21 219-239 4-24 (206)
253 2yvu_A Probable adenylyl-sulfa 96.9 0.00051 1.7E-08 65.2 3.5 39 215-254 11-49 (186)
254 3t34_A Dynamin-related protein 96.9 0.0032 1.1E-07 66.6 10.1 28 219-246 36-65 (360)
255 2o5v_A DNA replication and rep 96.9 0.00064 2.2E-08 73.1 4.6 27 214-241 24-50 (359)
256 2www_A Methylmalonic aciduria 96.9 0.00044 1.5E-08 73.6 3.3 36 217-253 74-109 (349)
257 2f9l_A RAB11B, member RAS onco 96.9 0.00053 1.8E-08 65.4 3.5 24 219-242 7-30 (199)
258 3gku_A Probable RNA-binding pr 96.9 0.00058 2E-08 69.3 3.9 144 488-657 66-210 (225)
259 2if2_A Dephospho-COA kinase; a 96.8 0.00055 1.9E-08 65.7 3.5 21 219-239 3-23 (204)
260 3lxx_A GTPase IMAP family memb 96.8 0.0068 2.3E-07 59.8 11.2 27 219-245 31-57 (239)
261 2zts_A Putative uncharacterize 96.8 0.0022 7.7E-08 62.5 7.7 41 214-254 27-67 (251)
262 1sxj_C Activator 1 40 kDa subu 96.8 0.00032 1.1E-08 73.2 1.6 38 208-245 32-74 (340)
263 2p67_A LAO/AO transport system 96.8 0.00059 2E-08 72.1 3.3 46 208-254 44-92 (341)
264 1ypw_A Transitional endoplasmi 96.8 0.0003 1E-08 82.9 1.1 72 214-304 508-579 (806)
265 1qvr_A CLPB protein; coiled co 96.7 0.0025 8.6E-08 75.2 8.4 102 217-331 191-310 (854)
266 3cmw_A Protein RECA, recombina 96.7 0.0035 1.2E-07 79.1 10.0 114 214-329 380-519 (1706)
267 2j9r_A Thymidine kinase; TK1, 96.7 0.0032 1.1E-07 63.4 7.6 110 215-332 26-140 (214)
268 3pfi_A Holliday junction ATP-d 96.6 0.006 2.1E-07 63.0 9.8 24 218-241 56-79 (338)
269 3cm0_A Adenylate kinase; ATP-b 96.6 0.0009 3.1E-08 63.0 3.1 26 216-241 3-28 (186)
270 3kb2_A SPBC2 prophage-derived 96.6 0.00081 2.8E-08 62.0 2.7 24 219-242 3-26 (173)
271 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.001 3.6E-08 62.2 3.5 25 217-241 23-47 (149)
272 1qhx_A CPT, protein (chloramph 96.6 0.0012 4E-08 61.7 3.8 26 217-242 3-28 (178)
273 1q57_A DNA primase/helicase; d 96.6 0.0054 1.8E-07 67.8 9.6 42 214-255 239-280 (503)
274 3u61_B DNA polymerase accessor 96.6 0.0094 3.2E-07 61.3 10.8 88 218-331 49-147 (324)
275 3cmu_A Protein RECA, recombina 96.6 0.004 1.4E-07 79.6 9.5 89 214-305 1424-1515(2050)
276 4eaq_A DTMP kinase, thymidylat 96.6 0.0014 4.8E-08 65.5 4.4 30 214-243 23-52 (229)
277 3t61_A Gluconokinase; PSI-biol 96.6 0.00075 2.6E-08 64.9 2.2 25 217-241 18-42 (202)
278 1sxj_A Activator 1 95 kDa subu 96.6 0.0071 2.4E-07 67.3 10.3 35 217-255 77-111 (516)
279 1hqc_A RUVB; extended AAA-ATPa 96.6 0.0065 2.2E-07 62.0 9.3 24 218-241 39-62 (324)
280 3cmw_A Protein RECA, recombina 96.5 0.0041 1.4E-07 78.6 9.1 113 214-329 729-868 (1706)
281 1jr3_A DNA polymerase III subu 96.5 0.0015 5E-08 67.9 4.3 25 219-243 40-64 (373)
282 1odf_A YGR205W, hypothetical 3 96.5 0.001 3.4E-08 69.3 2.9 29 216-244 30-58 (290)
283 2c9o_A RUVB-like 1; hexameric 96.5 0.0012 4.2E-08 72.3 3.7 72 216-305 62-136 (456)
284 3pxg_A Negative regulator of g 96.5 0.0019 6.4E-08 71.2 4.9 27 216-242 200-226 (468)
285 2gj8_A MNME, tRNA modification 96.5 0.0014 4.6E-08 61.5 3.2 26 216-241 3-28 (172)
286 1np6_A Molybdopterin-guanine d 96.5 0.0013 4.6E-08 63.6 3.2 35 218-253 7-41 (174)
287 3lw7_A Adenylate kinase relate 96.4 0.0015 5E-08 59.7 3.3 19 219-237 3-21 (179)
288 1kht_A Adenylate kinase; phosp 96.4 0.0017 5.9E-08 60.8 3.7 26 217-242 3-28 (192)
289 4dcu_A GTP-binding protein ENG 96.4 0.0035 1.2E-07 68.6 6.6 23 218-240 24-46 (456)
290 1r6b_X CLPA protein; AAA+, N-t 96.4 0.0081 2.8E-07 69.6 9.9 27 216-242 206-232 (758)
291 3ice_A Transcription terminati 96.4 0.00065 2.2E-08 74.4 0.7 50 189-242 133-199 (422)
292 2wji_A Ferrous iron transport 96.4 0.0016 5.6E-08 60.1 3.3 24 219-242 5-28 (165)
293 2rhm_A Putative kinase; P-loop 96.4 0.0017 5.7E-08 61.2 3.3 26 216-241 4-29 (193)
294 3pxi_A Negative regulator of g 96.3 0.0062 2.1E-07 70.8 8.5 76 219-315 523-598 (758)
295 2ffh_A Protein (FFH); SRP54, s 96.3 0.0018 6.1E-08 71.2 3.7 39 216-255 97-135 (425)
296 2v54_A DTMP kinase, thymidylat 96.3 0.0024 8E-08 60.9 4.1 26 216-241 3-28 (204)
297 1ly1_A Polynucleotide kinase; 96.3 0.002 6.7E-08 59.8 3.4 22 218-239 3-24 (181)
298 2w58_A DNAI, primosome compone 96.3 0.0022 7.4E-08 61.4 3.8 35 218-253 55-89 (202)
299 2jaq_A Deoxyguanosine kinase; 96.3 0.0017 5.7E-08 61.6 3.0 24 219-242 2-25 (205)
300 3e1s_A Exodeoxyribonuclease V, 96.3 0.0081 2.8E-07 68.2 9.0 112 208-328 196-314 (574)
301 1y63_A LMAJ004144AAA protein; 96.3 0.0023 8E-08 61.0 3.8 27 215-241 8-34 (184)
302 1j8m_F SRP54, signal recogniti 96.3 0.0013 4.6E-08 68.6 2.2 38 217-255 98-135 (297)
303 3bgw_A DNAB-like replicative h 96.2 0.0054 1.8E-07 67.5 6.9 114 214-328 194-318 (444)
304 3cmu_A Protein RECA, recombina 96.2 0.0094 3.2E-07 76.3 9.8 111 214-330 380-520 (2050)
305 3trf_A Shikimate kinase, SK; a 96.2 0.0026 8.8E-08 59.9 3.6 25 217-241 5-29 (185)
306 2wjg_A FEOB, ferrous iron tran 96.2 0.0025 8.6E-08 59.3 3.4 22 219-240 9-30 (188)
307 3iij_A Coilin-interacting nucl 96.2 0.0023 7.9E-08 60.2 3.2 27 215-241 9-35 (180)
308 4ag6_A VIRB4 ATPase, type IV s 96.2 0.0028 9.6E-08 67.6 4.2 41 216-257 34-74 (392)
309 1xjc_A MOBB protein homolog; s 96.2 0.0022 7.6E-08 62.1 3.1 36 218-254 5-40 (169)
310 1via_A Shikimate kinase; struc 96.2 0.0018 6.1E-08 60.8 2.3 23 219-241 6-28 (175)
311 2zej_A Dardarin, leucine-rich 96.1 0.0022 7.6E-08 60.3 2.8 23 219-241 4-26 (184)
312 2c95_A Adenylate kinase 1; tra 96.1 0.0029 1E-07 59.7 3.6 27 215-241 7-33 (196)
313 2p5t_B PEZT; postsegregational 96.1 0.0018 6.1E-08 65.2 2.2 27 216-242 31-57 (253)
314 2plr_A DTMP kinase, probable t 96.1 0.0029 1E-07 60.2 3.5 28 216-243 3-30 (213)
315 1q3t_A Cytidylate kinase; nucl 96.1 0.0031 1.1E-07 62.4 3.8 28 214-241 13-40 (236)
316 1w4r_A Thymidine kinase; type 96.1 0.011 3.7E-07 58.7 7.5 108 215-332 18-129 (195)
317 3qks_A DNA double-strand break 96.1 0.003 1E-07 61.9 3.5 24 218-241 24-47 (203)
318 1r6b_X CLPA protein; AAA+, N-t 96.1 0.014 4.7E-07 67.6 9.5 32 219-254 490-521 (758)
319 1sxj_D Activator 1 41 kDa subu 96.0 0.0021 7.2E-08 66.2 2.3 29 214-242 53-83 (353)
320 1nks_A Adenylate kinase; therm 96.0 0.0031 1.1E-07 59.0 3.3 34 219-253 3-36 (194)
321 1tev_A UMP-CMP kinase; ploop, 96.0 0.0034 1.1E-07 58.9 3.4 25 217-241 3-27 (196)
322 2ze6_A Isopentenyl transferase 96.0 0.0033 1.1E-07 63.6 3.5 24 219-242 3-26 (253)
323 2wwf_A Thymidilate kinase, put 96.0 0.0037 1.3E-07 59.8 3.7 28 215-242 8-35 (212)
324 1ega_A Protein (GTP-binding pr 96.0 0.0027 9.4E-08 65.9 2.9 25 217-241 8-32 (301)
325 3cf2_A TER ATPase, transitiona 96.0 0.0047 1.6E-07 73.0 5.1 71 216-305 510-580 (806)
326 1vht_A Dephospho-COA kinase; s 95.9 0.0039 1.3E-07 60.6 3.6 23 217-239 4-26 (218)
327 2bwj_A Adenylate kinase 5; pho 95.9 0.0034 1.2E-07 59.4 3.1 27 215-241 10-36 (199)
328 1qvr_A CLPB protein; coiled co 95.9 0.0083 2.8E-07 70.8 6.8 37 218-255 589-625 (854)
329 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0022 7.4E-08 69.2 1.7 29 214-242 19-49 (359)
330 1gtv_A TMK, thymidylate kinase 95.9 0.0016 5.5E-08 62.5 0.7 34 219-253 2-35 (214)
331 1sxj_B Activator 1 37 kDa subu 95.9 0.0084 2.9E-07 60.6 6.0 24 219-242 44-67 (323)
332 1nn5_A Similar to deoxythymidy 95.9 0.0042 1.4E-07 59.5 3.6 28 215-242 7-34 (215)
333 2vli_A Antibiotic resistance p 95.9 0.0031 1.1E-07 59.0 2.4 27 216-242 4-30 (183)
334 1ojl_A Transcriptional regulat 95.9 0.017 5.7E-07 60.0 8.1 39 214-253 22-60 (304)
335 1zd8_A GTP:AMP phosphotransfer 95.8 0.0047 1.6E-07 60.5 3.5 26 216-241 6-31 (227)
336 1aky_A Adenylate kinase; ATP:A 95.8 0.0053 1.8E-07 59.8 3.8 26 216-241 3-28 (220)
337 1uf9_A TT1252 protein; P-loop, 95.8 0.005 1.7E-07 58.4 3.5 24 217-240 8-31 (203)
338 1zuh_A Shikimate kinase; alpha 95.7 0.0056 1.9E-07 56.9 3.6 24 218-241 8-31 (168)
339 3pxi_A Negative regulator of g 95.7 0.0061 2.1E-07 70.8 4.6 95 216-331 200-302 (758)
340 1yrb_A ATP(GTP)binding protein 95.7 0.006 2.1E-07 60.4 3.9 37 217-255 14-50 (262)
341 2orv_A Thymidine kinase; TP4A 95.7 0.039 1.3E-06 56.3 10.0 108 216-331 18-127 (234)
342 2cdn_A Adenylate kinase; phosp 95.7 0.0062 2.1E-07 58.4 3.8 25 217-241 20-44 (201)
343 3fb4_A Adenylate kinase; psych 95.7 0.0057 2E-07 59.1 3.4 23 219-241 2-24 (216)
344 3dl0_A Adenylate kinase; phosp 95.6 0.0058 2E-07 59.1 3.4 23 219-241 2-24 (216)
345 1gvn_B Zeta; postsegregational 95.6 0.0048 1.7E-07 63.7 3.0 26 217-242 33-58 (287)
346 2z0h_A DTMP kinase, thymidylat 95.6 0.006 2E-07 57.6 3.4 33 219-252 2-34 (197)
347 2i1q_A DNA repair and recombin 95.6 0.0094 3.2E-07 61.8 5.1 43 214-256 95-152 (322)
348 2pbr_A DTMP kinase, thymidylat 95.6 0.0062 2.1E-07 57.1 3.4 24 219-242 2-25 (195)
349 1qf9_A UMP/CMP kinase, protein 95.6 0.0059 2E-07 57.1 3.2 24 218-241 7-30 (194)
350 3ake_A Cytidylate kinase; CMP 95.6 0.0051 1.7E-07 58.6 2.8 23 219-241 4-26 (208)
351 2r44_A Uncharacterized protein 95.6 0.0029 1E-07 65.4 1.1 29 214-242 43-71 (331)
352 3k53_A Ferrous iron transport 95.6 0.0058 2E-07 61.8 3.2 23 219-241 5-27 (271)
353 1z2a_A RAS-related protein RAB 95.6 0.007 2.4E-07 54.7 3.5 23 219-241 7-29 (168)
354 1kao_A RAP2A; GTP-binding prot 95.6 0.0072 2.5E-07 54.2 3.5 23 219-241 5-27 (167)
355 2ce2_X GTPase HRAS; signaling 95.6 0.0067 2.3E-07 54.2 3.3 23 219-241 5-27 (166)
356 2ged_A SR-beta, signal recogni 95.5 0.0071 2.4E-07 56.6 3.5 24 218-241 49-72 (193)
357 1e6c_A Shikimate kinase; phosp 95.5 0.0059 2E-07 56.5 2.9 24 218-241 3-26 (173)
358 2nzj_A GTP-binding protein REM 95.5 0.0065 2.2E-07 55.4 3.1 23 219-241 6-28 (175)
359 2dyk_A GTP-binding protein; GT 95.5 0.0076 2.6E-07 54.2 3.5 23 219-241 3-25 (161)
360 2erx_A GTP-binding protein DI- 95.5 0.0076 2.6E-07 54.5 3.5 22 219-240 5-26 (172)
361 1u8z_A RAS-related protein RAL 95.5 0.0076 2.6E-07 54.1 3.5 23 219-241 6-28 (168)
362 1ukz_A Uridylate kinase; trans 95.5 0.0072 2.5E-07 57.8 3.5 25 217-241 15-39 (203)
363 1ex7_A Guanylate kinase; subst 95.5 0.0068 2.3E-07 59.4 3.3 24 219-242 3-26 (186)
364 3r20_A Cytidylate kinase; stru 95.5 0.0058 2E-07 62.0 2.8 25 217-241 9-33 (233)
365 1zak_A Adenylate kinase; ATP:A 95.5 0.0063 2.2E-07 59.3 3.0 26 217-242 5-30 (222)
366 2iyv_A Shikimate kinase, SK; t 95.5 0.0062 2.1E-07 57.3 2.8 24 218-241 3-26 (184)
367 1z0j_A RAB-22, RAS-related pro 95.5 0.0083 2.8E-07 54.3 3.5 23 219-241 8-30 (170)
368 2pt5_A Shikimate kinase, SK; a 95.4 0.0079 2.7E-07 55.5 3.4 23 219-241 2-24 (168)
369 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0075 2.6E-07 60.9 3.5 38 216-254 3-40 (260)
370 3umf_A Adenylate kinase; rossm 95.4 0.0079 2.7E-07 60.3 3.5 28 214-241 26-53 (217)
371 1ek0_A Protein (GTP-binding pr 95.4 0.0087 3E-07 54.0 3.5 23 219-241 5-27 (170)
372 3p32_A Probable GTPase RV1496/ 95.4 0.008 2.7E-07 63.7 3.6 37 218-255 80-116 (355)
373 1g16_A RAS-related protein SEC 95.4 0.0077 2.6E-07 54.5 3.0 23 219-241 5-27 (170)
374 1wms_A RAB-9, RAB9, RAS-relate 95.4 0.0091 3.1E-07 54.7 3.5 23 219-241 9-31 (177)
375 3q72_A GTP-binding protein RAD 95.4 0.0062 2.1E-07 55.2 2.4 23 219-241 4-26 (166)
376 1z08_A RAS-related protein RAB 95.4 0.0092 3.1E-07 54.1 3.5 23 219-241 8-30 (170)
377 3q85_A GTP-binding protein REM 95.4 0.0079 2.7E-07 54.7 3.1 23 219-241 4-26 (169)
378 1ky3_A GTP-binding protein YPT 95.4 0.0092 3.1E-07 54.6 3.5 23 219-241 10-32 (182)
379 4ad8_A DNA repair protein RECN 95.3 0.0048 1.7E-07 68.7 1.9 27 214-241 58-84 (517)
380 1c1y_A RAS-related protein RAP 95.3 0.0093 3.2E-07 53.8 3.5 22 219-240 5-26 (167)
381 3tw8_B RAS-related protein RAB 95.3 0.0073 2.5E-07 55.2 2.6 22 219-240 11-32 (181)
382 3clv_A RAB5 protein, putative; 95.3 0.0092 3.1E-07 55.2 3.3 23 219-241 9-31 (208)
383 1r2q_A RAS-related protein RAB 95.3 0.0093 3.2E-07 53.8 3.2 22 219-240 8-29 (170)
384 2fn4_A P23, RAS-related protei 95.3 0.0097 3.3E-07 54.4 3.3 22 219-240 11-32 (181)
385 1w36_D RECD, exodeoxyribonucle 95.2 0.016 5.3E-07 66.2 5.6 40 216-255 163-205 (608)
386 3be4_A Adenylate kinase; malar 95.2 0.01 3.5E-07 57.9 3.6 25 217-241 5-29 (217)
387 2lkc_A Translation initiation 95.2 0.012 4.1E-07 53.9 3.8 26 216-241 7-32 (178)
388 3bc1_A RAS-related protein RAB 95.2 0.011 3.6E-07 54.7 3.5 23 219-241 13-35 (195)
389 2wsm_A Hydrogenase expression/ 95.2 0.011 3.9E-07 56.8 3.8 35 218-254 31-65 (221)
390 1svi_A GTP-binding protein YSX 95.2 0.0092 3.2E-07 55.8 3.0 23 218-240 24-46 (195)
391 3t1o_A Gliding protein MGLA; G 95.2 0.011 3.6E-07 55.0 3.4 25 219-243 16-40 (198)
392 4dsu_A GTPase KRAS, isoform 2B 95.2 0.01 3.5E-07 54.8 3.3 23 219-241 6-28 (189)
393 1m2o_B GTP-binding protein SAR 95.2 0.011 3.6E-07 56.1 3.4 23 218-240 24-46 (190)
394 1ofh_A ATP-dependent HSL prote 95.1 0.008 2.7E-07 60.6 2.6 25 217-241 50-74 (310)
395 2xb4_A Adenylate kinase; ATP-b 95.1 0.011 3.6E-07 58.3 3.4 23 219-241 2-24 (223)
396 3pqc_A Probable GTP-binding pr 95.1 0.01 3.4E-07 55.1 3.0 24 218-241 24-47 (195)
397 3uk6_A RUVB-like 2; hexameric 95.1 0.0086 2.9E-07 62.3 2.8 27 217-243 70-96 (368)
398 1upt_A ARL1, ADP-ribosylation 95.1 0.012 4.1E-07 53.4 3.5 23 218-240 8-30 (171)
399 2hxs_A RAB-26, RAS-related pro 95.1 0.012 4.3E-07 53.8 3.6 23 219-241 8-30 (178)
400 1e4v_A Adenylate kinase; trans 95.1 0.01 3.6E-07 57.5 3.2 23 219-241 2-24 (214)
401 1mky_A Probable GTP-binding pr 95.1 0.0097 3.3E-07 64.8 3.3 23 219-241 182-204 (439)
402 2qby_B CDC6 homolog 3, cell di 95.1 0.017 5.7E-07 60.2 4.9 37 217-253 45-88 (384)
403 2oil_A CATX-8, RAS-related pro 95.1 0.012 4.1E-07 55.1 3.5 23 219-241 27-49 (193)
404 3sr0_A Adenylate kinase; phosp 95.1 0.011 3.9E-07 58.4 3.4 23 219-241 2-24 (206)
405 2y8e_A RAB-protein 6, GH09086P 95.1 0.011 3.7E-07 54.0 3.0 23 219-241 16-38 (179)
406 2a9k_A RAS-related protein RAL 95.1 0.012 4.2E-07 54.0 3.5 23 219-241 20-42 (187)
407 1z0f_A RAB14, member RAS oncog 95.1 0.013 4.3E-07 53.5 3.5 23 219-241 17-39 (179)
408 1ak2_A Adenylate kinase isoenz 95.0 0.013 4.5E-07 57.8 3.8 26 216-241 15-40 (233)
409 2cxx_A Probable GTP-binding pr 95.0 0.011 3.6E-07 54.9 2.9 23 219-241 3-25 (190)
410 1r8s_A ADP-ribosylation factor 95.0 0.012 4.1E-07 53.2 3.2 22 219-240 2-23 (164)
411 2ohf_A Protein OLA1, GTP-bindi 95.0 0.0097 3.3E-07 64.9 3.0 31 210-240 15-45 (396)
412 1g5t_A COB(I)alamin adenosyltr 95.0 0.024 8.1E-07 56.3 5.5 126 217-345 28-179 (196)
413 2efe_B Small GTP-binding prote 95.0 0.013 4.3E-07 53.9 3.3 23 219-241 14-36 (181)
414 1nrj_B SR-beta, signal recogni 95.0 0.013 4.4E-07 56.1 3.5 24 218-241 13-36 (218)
415 2iut_A DNA translocase FTSK; n 95.0 0.072 2.5E-06 60.7 10.0 53 214-267 211-268 (574)
416 2g6b_A RAS-related protein RAB 95.0 0.014 4.7E-07 53.6 3.5 23 219-241 12-34 (180)
417 1uj2_A Uridine-cytidine kinase 95.0 0.012 4.2E-07 58.8 3.4 38 218-255 23-64 (252)
418 3e2i_A Thymidine kinase; Zn-bi 94.9 0.048 1.6E-06 55.1 7.6 109 215-332 26-140 (219)
419 3a8t_A Adenylate isopentenyltr 94.9 0.053 1.8E-06 58.0 8.4 27 216-242 39-65 (339)
420 1fzq_A ADP-ribosylation factor 94.9 0.0095 3.3E-07 55.9 2.4 23 218-240 17-39 (181)
421 3con_A GTPase NRAS; structural 94.9 0.014 4.8E-07 54.4 3.5 23 219-241 23-45 (190)
422 3hws_A ATP-dependent CLP prote 94.9 0.011 3.9E-07 62.1 3.2 26 216-241 50-75 (363)
423 3tlx_A Adenylate kinase 2; str 94.9 0.014 4.6E-07 58.5 3.5 26 216-241 28-53 (243)
424 1um8_A ATP-dependent CLP prote 94.9 0.016 5.4E-07 61.3 4.1 26 216-241 71-96 (376)
425 2bme_A RAB4A, RAS-related prot 94.9 0.013 4.4E-07 54.2 3.0 23 219-241 12-34 (186)
426 3b1v_A Ferrous iron uptake tra 94.9 0.013 4.6E-07 60.1 3.3 23 219-241 5-27 (272)
427 4dzz_A Plasmid partitioning pr 94.9 0.031 1E-06 53.0 5.6 95 219-321 3-100 (206)
428 3nbx_X ATPase RAVA; AAA+ ATPas 94.8 0.0091 3.1E-07 66.9 2.2 29 214-242 38-66 (500)
429 2v3c_C SRP54, signal recogniti 94.8 0.0058 2E-07 67.2 0.6 37 218-255 100-136 (432)
430 3tkl_A RAS-related protein RAB 94.8 0.014 4.9E-07 54.3 3.2 23 219-241 18-40 (196)
431 2bov_A RAla, RAS-related prote 94.8 0.016 5.3E-07 54.6 3.5 23 219-241 16-38 (206)
432 2qtf_A Protein HFLX, GTP-bindi 94.8 0.013 4.3E-07 62.9 3.1 24 219-242 181-204 (364)
433 1moz_A ARL1, ADP-ribosylation 94.8 0.0087 3E-07 55.2 1.6 23 217-239 18-40 (183)
434 1vg8_A RAS-related protein RAB 94.8 0.016 5.5E-07 54.6 3.5 23 219-241 10-32 (207)
435 3kkq_A RAS-related protein M-R 94.8 0.016 5.6E-07 53.5 3.5 23 219-241 20-42 (183)
436 2gf9_A RAS-related protein RAB 94.8 0.015 5.2E-07 54.4 3.2 23 219-241 24-46 (189)
437 2bjv_A PSP operon transcriptio 94.8 0.026 9E-07 56.3 5.2 40 214-254 26-65 (265)
438 1f6b_A SAR1; gtpases, N-termin 94.8 0.0099 3.4E-07 56.8 2.0 32 208-239 14-47 (198)
439 1m7b_A RND3/RHOE small GTP-bin 94.7 0.015 5E-07 54.4 3.0 23 219-241 9-31 (184)
440 1mh1_A RAC1; GTP-binding, GTPa 94.7 0.017 5.8E-07 53.1 3.5 22 219-240 7-28 (186)
441 1a5t_A Delta prime, HOLB; zinc 94.7 0.097 3.3E-06 54.7 9.6 30 214-243 18-50 (334)
442 3auy_A DNA double-strand break 94.7 0.014 4.9E-07 62.1 3.3 22 218-239 26-47 (371)
443 1ltq_A Polynucleotide kinase; 94.7 0.016 5.3E-07 59.0 3.4 23 218-240 3-25 (301)
444 2gf0_A GTP-binding protein DI- 94.7 0.017 5.6E-07 54.1 3.3 22 219-240 10-31 (199)
445 3ihw_A Centg3; RAS, centaurin, 94.7 0.017 5.7E-07 54.6 3.3 22 219-240 22-43 (184)
446 2fg5_A RAB-22B, RAS-related pr 94.6 0.017 6E-07 54.3 3.3 23 219-241 25-47 (192)
447 3t5g_A GTP-binding protein RHE 94.6 0.018 6E-07 53.2 3.3 21 219-239 8-28 (181)
448 1zbd_A Rabphilin-3A; G protein 94.6 0.017 5.7E-07 54.6 3.2 23 219-241 10-32 (203)
449 1ksh_A ARF-like protein 2; sma 94.6 0.017 5.7E-07 53.7 3.1 25 217-241 18-42 (186)
450 3bwd_D RAC-like GTP-binding pr 94.6 0.019 6.5E-07 52.7 3.5 23 219-241 10-32 (182)
451 1x3s_A RAS-related protein RAB 94.6 0.019 6.6E-07 53.3 3.5 23 219-241 17-39 (195)
452 3lxw_A GTPase IMAP family memb 94.6 0.018 6.1E-07 57.8 3.4 23 219-241 23-45 (247)
453 3dz8_A RAS-related protein RAB 94.6 0.017 5.8E-07 54.2 3.0 23 219-241 25-47 (191)
454 1z06_A RAS-related protein RAB 94.5 0.02 6.9E-07 53.5 3.5 23 219-241 22-44 (189)
455 3oes_A GTPase rhebl1; small GT 94.5 0.019 6.6E-07 54.5 3.3 23 219-241 26-48 (201)
456 3cph_A RAS-related protein SEC 94.5 0.019 6.4E-07 54.4 3.2 24 218-241 21-44 (213)
457 2a5j_A RAS-related protein RAB 94.5 0.021 7.1E-07 53.7 3.5 23 219-241 23-45 (191)
458 2xtp_A GTPase IMAP family memb 94.5 0.019 6.4E-07 57.2 3.3 24 218-241 23-46 (260)
459 2grj_A Dephospho-COA kinase; T 94.5 0.02 6.7E-07 56.0 3.4 24 218-241 13-36 (192)
460 2cjw_A GTP-binding protein GEM 94.5 0.019 6.5E-07 54.6 3.2 22 219-240 8-29 (192)
461 2atv_A RERG, RAS-like estrogen 94.5 0.02 6.7E-07 54.1 3.3 22 219-240 30-51 (196)
462 1zd9_A ADP-ribosylation factor 94.5 0.021 7.3E-07 53.6 3.5 24 218-241 23-46 (188)
463 2hf9_A Probable hydrogenase ni 94.5 0.023 7.8E-07 54.8 3.7 34 218-253 39-72 (226)
464 3iby_A Ferrous iron transport 94.5 0.019 6.4E-07 58.3 3.2 23 219-241 3-25 (256)
465 1tue_A Replication protein E1; 94.4 0.015 5E-07 58.6 2.4 28 214-241 55-82 (212)
466 1iqp_A RFCS; clamp loader, ext 94.4 0.015 5.3E-07 58.8 2.6 29 214-242 41-71 (327)
467 2bcg_Y Protein YP2, GTP-bindin 94.4 0.019 6.4E-07 54.5 3.0 23 219-241 10-32 (206)
468 2iwr_A Centaurin gamma 1; ANK 94.4 0.016 5.4E-07 53.3 2.4 22 219-240 9-30 (178)
469 3reg_A RHO-like small GTPase; 94.4 0.022 7.5E-07 53.5 3.5 23 219-241 25-47 (194)
470 2qen_A Walker-type ATPase; unk 94.4 0.016 5.6E-07 58.9 2.7 29 213-241 27-55 (350)
471 2p5s_A RAS and EF-hand domain 94.4 0.022 7.6E-07 53.9 3.5 23 219-241 30-52 (199)
472 3iev_A GTP-binding protein ERA 94.4 0.019 6.6E-07 59.6 3.3 23 218-240 11-33 (308)
473 3cbq_A GTP-binding protein REM 94.4 0.014 4.8E-07 55.7 2.0 22 219-240 25-46 (195)
474 1zj6_A ADP-ribosylation factor 94.4 0.021 7.3E-07 53.3 3.2 22 218-239 17-38 (187)
475 2f6r_A COA synthase, bifunctio 94.4 0.02 6.8E-07 58.8 3.3 22 218-239 76-97 (281)
476 2h92_A Cytidylate kinase; ross 94.3 0.021 7.1E-07 55.2 3.1 25 217-241 3-27 (219)
477 1wf3_A GTP-binding protein; GT 94.3 0.022 7.4E-07 59.3 3.4 22 219-240 9-30 (301)
478 4bas_A ADP-ribosylation factor 94.3 0.019 6.4E-07 53.7 2.6 24 218-241 18-41 (199)
479 3c5c_A RAS-like protein 12; GD 94.3 0.023 7.9E-07 53.5 3.3 23 219-241 23-45 (187)
480 2h17_A ADP-ribosylation factor 94.3 0.02 6.9E-07 53.3 2.8 23 218-240 22-44 (181)
481 2o52_A RAS-related protein RAB 94.3 0.022 7.6E-07 54.2 3.1 22 219-240 27-48 (200)
482 3a1s_A Iron(II) transport prot 94.2 0.024 8.1E-07 57.5 3.5 23 219-241 7-29 (258)
483 4edh_A DTMP kinase, thymidylat 94.2 0.028 9.4E-07 55.8 3.9 36 216-252 5-40 (213)
484 2h57_A ADP-ribosylation factor 94.2 0.017 5.8E-07 54.1 2.2 24 218-241 22-45 (190)
485 2f7s_A C25KG, RAS-related prot 94.2 0.024 8.3E-07 54.2 3.4 23 219-241 27-49 (217)
486 1g41_A Heat shock protein HSLU 94.2 0.02 7E-07 63.3 3.2 25 218-242 51-75 (444)
487 2ew1_A RAS-related protein RAB 94.2 0.022 7.7E-07 54.8 3.0 23 219-241 28-50 (201)
488 1sky_E F1-ATPase, F1-ATP synth 94.2 0.016 5.4E-07 64.7 2.2 35 209-243 141-177 (473)
489 1g8p_A Magnesium-chelatase 38 94.2 0.013 4.3E-07 60.4 1.3 26 217-242 45-70 (350)
490 2il1_A RAB12; G-protein, GDP, 94.2 0.021 7.3E-07 53.8 2.8 22 219-240 28-49 (192)
491 2q3h_A RAS homolog gene family 94.1 0.026 8.8E-07 53.2 3.3 23 218-240 21-43 (201)
492 2fv8_A H6, RHO-related GTP-bin 94.1 0.026 8.9E-07 53.9 3.3 23 219-241 27-49 (207)
493 1gwn_A RHO-related GTP-binding 94.1 0.024 8.2E-07 54.7 3.0 23 219-241 30-52 (205)
494 3zvl_A Bifunctional polynucleo 94.1 0.026 8.9E-07 61.3 3.6 26 216-241 257-282 (416)
495 3i8s_A Ferrous iron transport 94.1 0.025 8.5E-07 57.7 3.3 23 219-241 5-27 (274)
496 2qag_A Septin-2, protein NEDD5 94.1 0.02 6.8E-07 61.1 2.6 24 219-242 39-62 (361)
497 2fh5_B SR-beta, signal recogni 94.1 0.028 9.6E-07 53.6 3.5 23 219-241 9-31 (214)
498 2qu8_A Putative nucleolar GTP- 94.1 0.023 7.9E-07 55.3 2.9 23 218-240 30-52 (228)
499 3crm_A TRNA delta(2)-isopenten 94.0 0.027 9.3E-07 59.8 3.6 25 218-242 6-30 (323)
500 2j37_W Signal recognition part 94.0 0.022 7.6E-07 63.9 3.0 37 217-254 101-137 (504)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.95 E-value=8.4e-28 Score=249.66 Aligned_cols=164 Identities=20% Similarity=0.334 Sum_probs=126.3
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE------ 257 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E------ 257 (701)
..+++++||+++|+. ...+|+++ +.+|++++|+||||||||||+|+|+|++.|++|. +.+++.+-
T Consensus 5 ~~~l~i~~ls~~y~~----~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~--I~~~G~~i~~~~~~ 78 (275)
T 3gfo_A 5 DYILKVEELNYNYSD----GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGR--ILFDNKPIDYSRKG 78 (275)
T ss_dssp CEEEEEEEEEEECTT----SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEE--EEETTEECCCSHHH
T ss_pred CcEEEEEEEEEEECC----CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeE--EEECCEECCccccc
Confidence 457899999999973 23589998 8999999999999999999999999999998875 44444211
Q ss_pred -------cccCCCCC-----CC-------------------------------CCchh--hhccCCChhHHHHHHHHHHH
Q 005344 258 -------IGGDGDVP-----HS-------------------------------GIGRA--RRMQVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 258 -------Ia~~~~ip-----~~-------------------------------~ig~~--rr~~v~s~G~qQRV~IArAL 292 (701)
+++....+ .. ++... +...-.|+|||||++||+|+
T Consensus 79 ~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL 158 (275)
T 3gfo_A 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL 158 (275)
T ss_dssp HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHH
Confidence 11110000 00 00000 11122578999999999999
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 293 NHMPETIIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
+++|++||+||||++||+.++..+ + +.|.|||++||+++++..+||+++++.+|++ +..|+...
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i--~~~g~~~~ 230 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV--ILQGNPKE 230 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEE--EEEECHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEECCHHH
Confidence 999999999999999999998544 3 4599999999999999999999999999999 55666543
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.95 E-value=1.7e-27 Score=256.85 Aligned_cols=170 Identities=18% Similarity=0.249 Sum_probs=127.9
Q ss_pred hhhccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---
Q 005344 183 SAIRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--- 256 (701)
Q Consensus 183 s~ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--- 256 (701)
....+.+|+++||+++|+.. .+...+|+++ |.+|++++|+||||||||||+|+|+|++.|++|+ +.+++.+
T Consensus 18 ~~~~~~mi~v~~ls~~y~~~-~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~--I~i~G~~i~~ 94 (366)
T 3tui_C 18 DDDDKHMIKLSNITKVFHQG-TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS--VLVDGQELTT 94 (366)
T ss_dssp -----CCEEEEEEEEEEECS-SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE--EEETTEECSS
T ss_pred CCCCCceEEEEeEEEEeCCC-CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceE--EEECCEECCc
Confidence 34556689999999999732 1234689998 9999999999999999999999999999999876 4454421
Q ss_pred -----------ccccC----CCCCCC-------------------------------CCchh--hhccCCChhHHHHHHH
Q 005344 257 -----------EIGGD----GDVPHS-------------------------------GIGRA--RRMQVPNVNMQHSVMI 288 (701)
Q Consensus 257 -----------EIa~~----~~ip~~-------------------------------~ig~~--rr~~v~s~G~qQRV~I 288 (701)
.+++. ..++.. ++... +...-.|+|||||++|
T Consensus 95 ~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaI 174 (366)
T 3tui_C 95 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI 174 (366)
T ss_dssp CCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 01111 001110 00000 1112357899999999
Q ss_pred HHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 289 EAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 289 ArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
|+||+++|++||+||||++||+..+..+ ++.|+|||++||+++++..+||++++|.+|++ +..|+..
T Consensus 175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~i--v~~g~~~ 249 (366)
T 3tui_C 175 ARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL--IEQDTVS 249 (366)
T ss_dssp HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEE--EECCBHH
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEEcCHH
Confidence 9999999999999999999999988544 24599999999999999999999999999999 6677663
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.95 E-value=2e-27 Score=255.73 Aligned_cols=160 Identities=19% Similarity=0.210 Sum_probs=125.7
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------- 257 (701)
+++++||+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|++|+ +.+++..-
T Consensus 4 ~l~i~~ls~~y~~-----~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~--I~i~G~~i~~~~~~~~ 76 (359)
T 3fvq_A 4 ALHIGHLSKSFQN-----TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE--ISLSGKTIFSKNTNLP 76 (359)
T ss_dssp CEEEEEEEEEETT-----EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEE--EEETTEEEESSSCBCC
T ss_pred EEEEEeEEEEECC-----EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcE--EEECCEECcccccccc
Confidence 6899999999983 4789998 8999999999999999999999999999999886 55544211
Q ss_pred -----cccC----CCCCCCC-------------Cch--------------------hhhccCCChhHHHHHHHHHHHccC
Q 005344 258 -----IGGD----GDVPHSG-------------IGR--------------------ARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 258 -----Ia~~----~~ip~~~-------------ig~--------------------~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
+++. ..+|+.. ... .+...-.|+||||||+||+||+++
T Consensus 77 ~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~ 156 (359)
T 3fvq_A 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPD 156 (359)
T ss_dssp GGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 1111 1112210 000 011123578999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 296 PETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
|++||+||||++||+..+..+ ++.|+|+|++|||++++..+||++++|.+|+| +..|++.
T Consensus 157 P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i--~~~g~~~ 224 (359)
T 3fvq_A 157 PELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRI--LQTASPH 224 (359)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEE--EEEECHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEE--EEEeCHH
Confidence 999999999999999988544 35699999999999999999999999999999 4455553
No 4
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.95 E-value=5e-27 Score=242.38 Aligned_cols=162 Identities=20% Similarity=0.328 Sum_probs=125.2
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC---------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS--------- 255 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~--------- 255 (701)
.++++++|+++|+. ..+|+++ +.+|++++|+||||||||||+|+|+|++.|++|. +.+++.
T Consensus 10 ~~l~~~~l~~~~~~-----~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~--I~~~g~~~~~~~~~~ 82 (266)
T 4g1u_C 10 ALLEASHLHYHVQQ-----QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGE--CHLLGQNLNSWQPKA 82 (266)
T ss_dssp CEEEEEEEEEEETT-----EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCE--EEETTEETTTSCHHH
T ss_pred ceEEEEeEEEEeCC-----eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE--EEECCEECCcCCHHH
Confidence 46899999999983 4789998 8999999999999999999999999999999886 445443
Q ss_pred -----------cccccC---------CCCCCC---------------CCch--hhhccCCChhHHHHHHHHHHHcc----
Q 005344 256 -----------NEIGGD---------GDVPHS---------------GIGR--ARRMQVPNVNMQHSVMIEAVENH---- 294 (701)
Q Consensus 256 -----------~EIa~~---------~~ip~~---------------~ig~--~rr~~v~s~G~qQRV~IArAL~~---- 294 (701)
..+... ...... ++.. .+...-.|+|||||++||+||++
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~ 162 (266)
T 4g1u_C 83 LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQP 162 (266)
T ss_dssp HHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCS
T ss_pred HhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 111000 000000 0000 01122357899999999999999
Q ss_pred --CCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 295 --MPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 295 --~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
+|++||+||||++||+.++..+ ++ .|+|+|++||+++++..+||+++++.+|++ +..++.+.
T Consensus 163 ~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i--~~~g~~~~ 234 (266)
T 4g1u_C 163 QPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKL--VACGTPEE 234 (266)
T ss_dssp SCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEE--EEEECHHH
T ss_pred CCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEE--EEEcCHHH
Confidence 9999999999999999988544 33 368999999999999999999999999999 55566543
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.94 E-value=5e-27 Score=254.40 Aligned_cols=160 Identities=19% Similarity=0.289 Sum_probs=125.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------- 257 (701)
+++++||+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|++|+ +++++..-
T Consensus 3 ~l~~~~l~~~yg~-----~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~--I~i~G~~~~~~~~~~r 75 (381)
T 3rlf_A 3 SVQLQNVTKAWGE-----VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTPPAER 75 (381)
T ss_dssp CEEEEEEEEEETT-----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE--EEETTEECTTCCGGGS
T ss_pred EEEEEeEEEEECC-----EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeE--EEECCEECCCCCHHHC
Confidence 5899999999983 4789998 8999999999999999999999999999999886 44444210
Q ss_pred -cccC----CCCCCCCC-------------ch--------------------hhhccCCChhHHHHHHHHHHHccCCCEE
Q 005344 258 -IGGD----GDVPHSGI-------------GR--------------------ARRMQVPNVNMQHSVMIEAVENHMPETI 299 (701)
Q Consensus 258 -Ia~~----~~ip~~~i-------------g~--------------------~rr~~v~s~G~qQRV~IArAL~~~PdVI 299 (701)
+++. ..+|+..+ .. .+...-.|+|||||++||+||+.+|++|
T Consensus 76 ~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lL 155 (381)
T 3rlf_A 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155 (381)
T ss_dssp CEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEE
T ss_pred CEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEE
Confidence 1110 11222110 00 0111225789999999999999999999
Q ss_pred EEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 300 IIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 300 ILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
|+||||++||+..+..+ ++.|+|+|++|||++++..+||++++|.+|++ +..+++.
T Consensus 156 LLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i--~~~g~~~ 219 (381)
T 3rlf_A 156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV--AQVGKPL 219 (381)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEE--EEEECHH
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEE--EEEeCHH
Confidence 99999999999987544 34599999999999999999999999999999 4455553
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.94 E-value=6.7e-27 Score=240.58 Aligned_cols=161 Identities=25% Similarity=0.325 Sum_probs=123.6
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE------ 257 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E------ 257 (701)
+.+++++||+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|+.|. +.+++.+-
T Consensus 4 ~~~l~i~~l~~~y~~-----~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~--i~~~g~~~~~~~~~ 76 (262)
T 1b0u_A 4 ENKLHVIDLHKRYGG-----HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA--IIVNGQNINLVRDK 76 (262)
T ss_dssp -CCEEEEEEEEEETT-----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE--EEETTEECCEEECT
T ss_pred CceEEEeeEEEEECC-----EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE--EEECCEEccccccc
Confidence 346899999999973 3689988 8999999999999999999999999999998776 44443210
Q ss_pred ------------------cccC----CCCCCC--------------------------------CCchh---hhccCCCh
Q 005344 258 ------------------IGGD----GDVPHS--------------------------------GIGRA---RRMQVPNV 280 (701)
Q Consensus 258 ------------------Ia~~----~~ip~~--------------------------------~ig~~---rr~~v~s~ 280 (701)
+++. ..++.. ++... +...-.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSg 156 (262)
T 1b0u_A 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG 156 (262)
T ss_dssp TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCH
T ss_pred cccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCH
Confidence 1110 000000 11000 01122578
Q ss_pred hHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEec
Q 005344 281 NMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTL 353 (701)
Q Consensus 281 G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~l 353 (701)
|||||++||+|++++|++||+||||++||+.++..+ ++.|.|||++||+++++..+||+++++.+|++ +..
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i--~~~ 234 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI--EEE 234 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE--EEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEe
Confidence 999999999999999999999999999999998544 44599999999999999999999999999998 444
Q ss_pred CcH
Q 005344 354 GDE 356 (701)
Q Consensus 354 gd~ 356 (701)
++.
T Consensus 235 g~~ 237 (262)
T 1b0u_A 235 GDP 237 (262)
T ss_dssp ECH
T ss_pred CCH
Confidence 544
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.94 E-value=5.4e-27 Score=237.49 Aligned_cols=159 Identities=14% Similarity=0.190 Sum_probs=119.5
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
+++++||+++|+.. .....+|+++ +.+|++++|+||||||||||||+|+|++.|++|.
T Consensus 1 ~l~~~~l~~~y~~~-~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (235)
T 3tif_A 1 MVKLKNVTKTYKMG-EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79 (235)
T ss_dssp CEEEEEEEEEEEET-TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEeCCC-CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 47899999999732 0123589988 9999999999999999999999999999998775
Q ss_pred ----EEEEEcCCcccccC-------------C---CCCC-------------CCCch---hhhccCCChhHHHHHHHHHH
Q 005344 248 ----RVVIVDTSNEIGGD-------------G---DVPH-------------SGIGR---ARRMQVPNVNMQHSVMIEAV 291 (701)
Q Consensus 248 ----rViiVd~~~EIa~~-------------~---~ip~-------------~~ig~---~rr~~v~s~G~qQRV~IArA 291 (701)
.|+++.|...+... . .... .++.. .+...-.|+|||||++||+|
T Consensus 80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 14444443211000 0 0000 01100 01122357899999999999
Q ss_pred HccCCCEEEEcCCCCcccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 292 ENHMPETIIIDEIGTELEALAASTI-------AQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 292 L~~~PdVIILDEPtsgLD~~a~~~l-------~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
++++|++||+||||++||+..+..+ ++ .|.|||++||+++.+ .+||+++++.+|++.
T Consensus 160 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 160 LANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE 224 (235)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEE
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEE
Confidence 9999999999999999999998544 33 499999999999965 789999999999984
No 8
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=8.7e-27 Score=236.48 Aligned_cols=163 Identities=20% Similarity=0.218 Sum_probs=124.2
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc----------------
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK---------------- 247 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk---------------- 247 (701)
..++++++|+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|++|+
T Consensus 4 ~~~l~~~~l~~~y~~-----~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA-----IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78 (240)
T ss_dssp SEEEEEEEEEEEETT-----EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred CceEEEEeEEEEECC-----eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHH
Confidence 447899999999973 3689988 8999999999999999999999999999998774
Q ss_pred ---EEEEEcCCccccc---------CCCCCCCC--------------C-chh----hhccCCChhHHHHHHHHHHHccCC
Q 005344 248 ---RVVIVDTSNEIGG---------DGDVPHSG--------------I-GRA----RRMQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 248 ---rViiVd~~~EIa~---------~~~ip~~~--------------i-g~~----rr~~v~s~G~qQRV~IArAL~~~P 296 (701)
+|+++.+...+-. ....+... + +.. +...-.|+|||||++||+|++++|
T Consensus 79 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 158 (240)
T 1ji0_A 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRP 158 (240)
T ss_dssp HHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred HhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 1344443321100 00000000 0 000 011235789999999999999999
Q ss_pred CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 297 ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 297 dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++||+||||++||+.++..+ ++.|.|+|++||+.+.+..+||+++++.+|++ +..++.
T Consensus 159 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i--~~~g~~ 223 (240)
T 1ji0_A 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQI--VLEGKA 223 (240)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEE--EEEEEH
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE--EEEcCH
Confidence 99999999999999998554 34699999999999999999999999999998 434444
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.94 E-value=1.1e-26 Score=239.71 Aligned_cols=159 Identities=24% Similarity=0.314 Sum_probs=123.3
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------- 257 (701)
+++++||+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|+.|+ +.+++.+-
T Consensus 24 ~l~i~~l~~~y~~-----~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~--I~~~g~~i~~~~~~~~ 96 (263)
T 2olj_A 24 MIDVHQLKKSFGS-----LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE--IIIDGINLKAKDTNLN 96 (263)
T ss_dssp SEEEEEEEEEETT-----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE--EEETTEESSSTTCCHH
T ss_pred eEEEEeEEEEECC-----EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcE--EEECCEECCCccccHH
Confidence 6999999999973 3689988 8999999999999999999999999999998776 44444210
Q ss_pred -----cccCC----CCCCC--------------CCchh--------------------hhccCCChhHHHHHHHHHHHcc
Q 005344 258 -----IGGDG----DVPHS--------------GIGRA--------------------RRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 258 -----Ia~~~----~ip~~--------------~ig~~--------------------rr~~v~s~G~qQRV~IArAL~~ 294 (701)
+++.. .++.. ++... +...-.|+|||||++||+|+++
T Consensus 97 ~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~ 176 (263)
T 2olj_A 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAM 176 (263)
T ss_dssp HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred HHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHC
Confidence 11100 00100 00000 0111257899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+||||++||+.++..+ ++.|.|||++||+++.+..+||+++++.+|++ +..++.
T Consensus 177 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i--~~~g~~ 243 (263)
T 2olj_A 177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYI--IEEGKP 243 (263)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEE--EEEECH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEE--EEECCH
Confidence 9999999999999999998544 34599999999999999999999999999998 444544
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.94 E-value=8.1e-27 Score=234.42 Aligned_cols=153 Identities=20% Similarity=0.261 Sum_probs=119.0
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
.+++++||+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|++|+ +.+++.+
T Consensus 3 ~~l~~~~l~~~y~~-----~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 3 EILRAENIKKVIRG-----YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGK--VFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEEETT-----EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEE--EEETTEECCSSCHHH
T ss_pred cEEEEEeEEEEECC-----EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE--EEECCEECCCCCHHH
Confidence 36899999999973 4689988 8999999999999999999999999999998875 4444321
Q ss_pred -------ccccCC----CCCCC-------------CCc------------------h--hhhccCCChhHHHHHHHHHHH
Q 005344 257 -------EIGGDG----DVPHS-------------GIG------------------R--ARRMQVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 257 -------EIa~~~----~ip~~-------------~ig------------------~--~rr~~v~s~G~qQRV~IArAL 292 (701)
.+++.. .++.. +.. . .+...-.|+|||||++||+|+
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral 155 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL 155 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHT
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 011110 00110 000 0 001112578999999999999
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 293 NHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
+++|++||+||||++||+.++..+ ++.|.++|++||+.+++ .+||+++++.+|++
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i 217 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKV 217 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEE
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEE
Confidence 999999999999999999988544 34599999999999987 79999999999998
No 11
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=1.5e-26 Score=237.82 Aligned_cols=160 Identities=27% Similarity=0.347 Sum_probs=123.6
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-------- 256 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-------- 256 (701)
.+++++||+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|++|. +.+++.+
T Consensus 14 ~~l~i~~l~~~y~~-----~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~--I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK-----KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI--VTVFGKNVVEEPHEV 86 (256)
T ss_dssp CCEEEEEEEEEETT-----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE--EEETTEETTTCHHHH
T ss_pred CeEEEEEEEEEECC-----EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceE--EEECCEECCccHHHH
Confidence 46889999999973 3689988 8999999999999999999999999999998875 4444321
Q ss_pred --ccccCC----CCCCC-------------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCC
Q 005344 257 --EIGGDG----DVPHS-------------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPE 297 (701)
Q Consensus 257 --EIa~~~----~ip~~-------------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~Pd 297 (701)
.+++.. .++.. ++.. .+...-.|+|||||++||+|++++|+
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 166 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPR 166 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCS
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 011110 00000 0000 01112357899999999999999999
Q ss_pred EEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 298 TIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 298 VIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||+||||++||+.++..+ ++.|.|||++||+++++..+||+++++.+|++ +..++.
T Consensus 167 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i--~~~g~~ 230 (256)
T 1vpl_A 167 LAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTI--VETGTV 230 (256)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEE--EEEEEH
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEE--EEecCH
Confidence 9999999999999998554 44699999999999999999999999999998 434444
No 12
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.94 E-value=2e-26 Score=248.93 Aligned_cols=167 Identities=20% Similarity=0.268 Sum_probs=125.7
Q ss_pred hhhhccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--
Q 005344 182 ISAIRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-- 256 (701)
Q Consensus 182 Is~ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-- 256 (701)
|+.++..++++++|+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|++|+ +.+++..
T Consensus 4 ~~~~~M~~l~~~~l~~~y~~-----~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~--I~i~g~~i~ 76 (372)
T 1v43_A 4 IEVIKMVEVKLENLTKRFGN-----FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR--IYFGDRDVT 76 (372)
T ss_dssp --CCCCCCEEEEEEEEEETT-----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE--EEETTEECT
T ss_pred ccceeeeeEEEEEEEEEECC-----EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceE--EEECCEECC
Confidence 44445335899999999973 3688888 8999999999999999999999999999999876 4444321
Q ss_pred -------ccccC----CCCCCC-------------------------------CCch--hhhccCCChhHHHHHHHHHHH
Q 005344 257 -------EIGGD----GDVPHS-------------------------------GIGR--ARRMQVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 257 -------EIa~~----~~ip~~-------------------------------~ig~--~rr~~v~s~G~qQRV~IArAL 292 (701)
.+++. ..+|+. ++.. .+...-.|+|||||++||+||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAI 156 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 01110 011111 0000 011123578999999999999
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 293 NHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
+.+|++||+|||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|.+|++. ..+++.
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~--~~g~~~ 227 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL--QIGSPT 227 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE--EEECHH
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE--EeCCHH
Confidence 999999999999999999998554 234999999999999999999999999999994 345553
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.94 E-value=3.8e-26 Score=245.76 Aligned_cols=160 Identities=20% Similarity=0.282 Sum_probs=123.9
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
+++++||+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|++|+ +.+++.+
T Consensus 3 ~l~~~~l~~~y~~-----~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~--I~i~g~~i~~~~~~~r 75 (359)
T 2yyz_A 3 SIRVVNLKKYFGK-----VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE--IYFDDVLVNDIPPKYR 75 (359)
T ss_dssp CEEEEEEEEEETT-----EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE--EEETTEECTTSCGGGT
T ss_pred EEEEEEEEEEECC-----EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccE--EEECCEECCCCChhhC
Confidence 4889999999973 3688888 8999999999999999999999999999999876 4444321
Q ss_pred ccccC----CCCCCC-------------CCc------------------h--hhhccCCChhHHHHHHHHHHHccCCCEE
Q 005344 257 EIGGD----GDVPHS-------------GIG------------------R--ARRMQVPNVNMQHSVMIEAVENHMPETI 299 (701)
Q Consensus 257 EIa~~----~~ip~~-------------~ig------------------~--~rr~~v~s~G~qQRV~IArAL~~~PdVI 299 (701)
.+++. ..+|+. +.. . .+...-.|+|||||++||+||+.+|++|
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lL 155 (359)
T 2yyz_A 76 EVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVL 155 (359)
T ss_dssp TEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 11110 111111 000 0 0111225789999999999999999999
Q ss_pred EEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 300 IIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 300 ILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
|+|||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|.+|++. ..+++.
T Consensus 156 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~--~~g~~~ 219 (359)
T 2yyz_A 156 LFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLV--QYGTPD 219 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE--EEECHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE--EeCCHH
Confidence 99999999999998554 234999999999999999999999999999994 445553
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.94 E-value=2.3e-26 Score=235.60 Aligned_cols=155 Identities=21% Similarity=0.237 Sum_probs=120.6
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC----------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT---------- 254 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~---------- 254 (701)
.+++++||+++|+. ..+|+++ +.+|++++|+||||||||||+|+|+|++.|++|. +.+++
T Consensus 6 ~~l~i~~l~~~y~~-----~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~--i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 6 EILRTENIVKYFGE-----FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR--VYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEEETT-----EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEE--EEETTEECTTCCHHH
T ss_pred cEEEEeeeEEEECC-----EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEECCEECCCCCHHH
Confidence 36899999999973 3689988 8999999999999999999999999999998775 44433
Q ss_pred -----------Cccccc---------CCCCC-CCC-----------Cch---h-----------------hhccCCChhH
Q 005344 255 -----------SNEIGG---------DGDVP-HSG-----------IGR---A-----------------RRMQVPNVNM 282 (701)
Q Consensus 255 -----------~~EIa~---------~~~ip-~~~-----------ig~---~-----------------rr~~v~s~G~ 282 (701)
...+.. ..... ..+ ... . +...-.|+||
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 158 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQ 158 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHH
Confidence 211100 00000 000 000 0 0111257899
Q ss_pred HHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 283 QHSVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 283 qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
|||++||+|++++|++||+||||++||+.++..+ ++.|.|||++||+++++..+||+++++.+|++.
T Consensus 159 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 159 MKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999998554 445999999999999999999999999999983
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.94 E-value=2.8e-26 Score=246.50 Aligned_cols=163 Identities=20% Similarity=0.259 Sum_probs=125.7
Q ss_pred hccceEEEEeEEEEE-Ccccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----
Q 005344 185 IRNRKMQVIGLTCRV-GRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---- 256 (701)
Q Consensus 185 ir~~~IeI~nLs~ry-gr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---- 256 (701)
-...+++++||+++| +. ..+|+++ +.+|++++|+||||||||||||+|+|++.|++|+ +.+++..
T Consensus 10 ~~~~~l~~~~l~~~y~g~-----~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~--I~i~g~~i~~~ 82 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGG-----ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD--VWIGGKRVTDL 82 (355)
T ss_dssp -CCEEEEEEEEEECCTTS-----TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE--EEETTEECTTC
T ss_pred CCCceEEEEEEEEEEcCC-----CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccE--EEECCEECCcC
Confidence 345678999999999 62 3688888 8999999999999999999999999999999886 4554421
Q ss_pred -----ccccC----CCCCCCC-------------Cc------------------h--hhhccCCChhHHHHHHHHHHHcc
Q 005344 257 -----EIGGD----GDVPHSG-------------IG------------------R--ARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 257 -----EIa~~----~~ip~~~-------------ig------------------~--~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
.+++. ..+|+.. +. . .+...-.|+|||||++||+||+.
T Consensus 83 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~ 162 (355)
T 1z47_A 83 PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP 162 (355)
T ss_dssp CGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred ChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 11111 1112210 00 0 01112257899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+|||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|.+|++. ..+++
T Consensus 163 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~--~~g~~ 230 (355)
T 1z47_A 163 RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVE--QFGTP 230 (355)
T ss_dssp CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEE--EEECH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEE--EEcCH
Confidence 9999999999999999998554 234999999999999999999999999999994 34554
No 16
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.94 E-value=4.8e-26 Score=231.79 Aligned_cols=156 Identities=17% Similarity=0.286 Sum_probs=120.4
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
+++++||+++|+. +|+++ +.+ ++++|+||||||||||||+|+|++.|++|. +.+++.+
T Consensus 1 ml~~~~l~~~y~~-------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRLGN-------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGE--VRLNGADITPLPPERR 70 (240)
T ss_dssp CCEEEEEEEEETT-------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEE--EEETTEECTTSCTTTS
T ss_pred CEEEEEEEEEeCC-------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEECCEECCcCchhhC
Confidence 3689999999972 48887 889 999999999999999999999999999887 5665521
Q ss_pred ccccCCC----CCCC--------CC---c--h-h-------h----------hccCCChhHHHHHHHHHHHccCCCEEEE
Q 005344 257 EIGGDGD----VPHS--------GI---G--R-A-------R----------RMQVPNVNMQHSVMIEAVENHMPETIII 301 (701)
Q Consensus 257 EIa~~~~----ip~~--------~i---g--~-~-------r----------r~~v~s~G~qQRV~IArAL~~~PdVIIL 301 (701)
.+++... ++.. .. + . . . ...-.|+|||||++||+|++++|++||+
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllL 150 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLL 150 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEE
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1221100 0110 00 0 0 0 0 1112478999999999999999999999
Q ss_pred cCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 302 DEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 302 DEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||||++||+.++..+ + +.|.|||++||+.+.+..+||+++++.+|++ +..++.
T Consensus 151 DEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i--~~~g~~ 211 (240)
T 2onk_A 151 DEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRI--VEKGKL 211 (240)
T ss_dssp ESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEE--EEEECH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEECCH
Confidence 999999999998554 2 3499999999999999999999999999998 444444
No 17
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.94 E-value=3.9e-26 Score=246.56 Aligned_cols=160 Identities=19% Similarity=0.290 Sum_probs=124.4
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
+++++||+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|++|+ +.+++..
T Consensus 3 ~l~~~~l~~~y~~-----~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~--I~i~g~~~~~~~~~~~ 75 (372)
T 1g29_1 3 GVRLVDVWKVFGE-----VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ--IYIGDKLVADPEKGIF 75 (372)
T ss_dssp EEEEEEEEEEETT-----EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE--EEETTEEEEEGGGTEE
T ss_pred EEEEEeEEEEECC-----EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccE--EEECCEECcccccccc
Confidence 5899999999973 3688888 8999999999999999999999999999999876 4444321
Q ss_pred ------ccccC----CCCCCCC-------------Cchh--------------------hhccCCChhHHHHHHHHHHHc
Q 005344 257 ------EIGGD----GDVPHSG-------------IGRA--------------------RRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 257 ------EIa~~----~~ip~~~-------------ig~~--------------------rr~~v~s~G~qQRV~IArAL~ 293 (701)
.+++. ..+|+.. .... +...-.|+|||||++||+||+
T Consensus 76 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~ 155 (372)
T 1g29_1 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIV 155 (372)
T ss_dssp CCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHH
T ss_pred CCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHh
Confidence 11111 1122210 0000 011125789999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 294 HMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
.+|++||+|||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|.+|++. ..+++.
T Consensus 156 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~--~~g~~~ 225 (372)
T 1g29_1 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ--QVGSPD 225 (372)
T ss_dssp TCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE--EEECHH
T ss_pred cCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEE--EeCCHH
Confidence 99999999999999999998544 234999999999999999999999999999994 445553
No 18
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.94 E-value=4.4e-26 Score=245.47 Aligned_cols=160 Identities=22% Similarity=0.312 Sum_probs=124.3
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
+++++||+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++.|++|+ +.+++.+
T Consensus 3 ~l~~~~l~~~y~~-----~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~--I~i~g~~i~~~~~~~r 75 (362)
T 2it1_A 3 EIKLENIVKKFGN-----FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK--IYFDEKDVTELPPKDR 75 (362)
T ss_dssp CEEEEEEEEESSS-----SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE--EEETTEECTTSCGGGT
T ss_pred EEEEEeEEEEECC-----EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceE--EEECCEECCcCCHhHC
Confidence 4889999999973 3688888 8999999999999999999999999999999876 4454421
Q ss_pred ccccC----CCCCCCC-------------Cch--------------------hhhccCCChhHHHHHHHHHHHccCCCEE
Q 005344 257 EIGGD----GDVPHSG-------------IGR--------------------ARRMQVPNVNMQHSVMIEAVENHMPETI 299 (701)
Q Consensus 257 EIa~~----~~ip~~~-------------ig~--------------------~rr~~v~s~G~qQRV~IArAL~~~PdVI 299 (701)
.+++. ..+|+.. ... .+...-.|+|||||++||+||+++|++|
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 155 (362)
T 2it1_A 76 NVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVL 155 (362)
T ss_dssp TEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 11111 1112210 000 0011225789999999999999999999
Q ss_pred EEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 300 IIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 300 ILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
|+|||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|.+|++. ..+++.
T Consensus 156 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~--~~g~~~ 219 (362)
T 2it1_A 156 LLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEIL--QVGTPD 219 (362)
T ss_dssp EEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE--EEECHH
T ss_pred EEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE--EEcCHH
Confidence 99999999999998554 234999999999999999999999999999994 445553
No 19
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.93 E-value=6.7e-26 Score=233.44 Aligned_cols=166 Identities=19% Similarity=0.252 Sum_probs=124.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc---------------EEE
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK---------------RVV 250 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk---------------rVi 250 (701)
+++++||+++|+........+|+++ +.+|++++|+||||||||||||+|+|++.|++|. +|+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 5899999999972100003588888 8999999999999999999999999999998764 245
Q ss_pred EEcCCcc--cccC--------C--C-CCC-------------CCCc--hh--hhccCCChhHHHHHHHHHHHccCCCEEE
Q 005344 251 IVDTSNE--IGGD--------G--D-VPH-------------SGIG--RA--RRMQVPNVNMQHSVMIEAVENHMPETII 300 (701)
Q Consensus 251 iVd~~~E--Ia~~--------~--~-ip~-------------~~ig--~~--rr~~v~s~G~qQRV~IArAL~~~PdVII 300 (701)
++.+... +... . . .+. .++. .. +...-.|+|||||++||+|++++|++||
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll 161 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILI 161 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 5555421 1000 0 0 010 0111 10 1112357899999999999999999999
Q ss_pred EcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 301 IDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 301 LDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||||++||+.++..+ ++.|.|||++||+.+.+..+||+++++.+|++ +..++.
T Consensus 162 LDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i--~~~g~~ 222 (266)
T 2yz2_A 162 LDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKK--VFDGTR 222 (266)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEE--EEEEEH
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 9999999999998554 34599999999999999999999999999998 434444
No 20
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.93 E-value=4.4e-26 Score=244.53 Aligned_cols=159 Identities=19% Similarity=0.253 Sum_probs=123.1
Q ss_pred eEEEEeEEEEECcccccccc--eeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-------
Q 005344 189 KMQVIGLTCRVGRAVAGSAE--IICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~--~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~------- 256 (701)
+++++||+++|+. .. +|+++ +.+|++++|+||||||||||||+|+|++.|++|+ +.+++..
T Consensus 3 ~l~i~~l~~~y~~-----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~--I~i~g~~i~~~~~~ 75 (353)
T 1oxx_K 3 RIIVKNVSKVFKK-----GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE--LYFDDRLVASNGKL 75 (353)
T ss_dssp CEEEEEEEEEEGG-----GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEE--EEETTEEEEETTEE
T ss_pred EEEEEeEEEEECC-----EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE--EEECCEECcccccc
Confidence 5899999999973 35 88888 8999999999999999999999999999999876 4444321
Q ss_pred -------ccccC----CCCCCC-------------CCchh--------------------hhccCCChhHHHHHHHHHHH
Q 005344 257 -------EIGGD----GDVPHS-------------GIGRA--------------------RRMQVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 257 -------EIa~~----~~ip~~-------------~ig~~--------------------rr~~v~s~G~qQRV~IArAL 292 (701)
.+++. ..+++. ++... +...-.|+|||||++||+||
T Consensus 76 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL 155 (353)
T 1oxx_K 76 IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARAL 155 (353)
T ss_dssp SSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred cCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 11110 111221 00000 01122578999999999999
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 293 NHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+.+|++||+|||+++||+..+..+ ++.|.|+|++||+.+++..+||++++|.+|++. ..+++
T Consensus 156 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~--~~g~~ 225 (353)
T 1oxx_K 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV--QVGKP 225 (353)
T ss_dssp TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE--EEECH
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE--EEcCH
Confidence 999999999999999999988544 234999999999999999999999999999994 34555
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.93 E-value=6.2e-26 Score=243.11 Aligned_cols=158 Identities=20% Similarity=0.306 Sum_probs=123.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
+++++||+++|+. . +|+++ +.+|++++|+||||||||||||+|+|++.|++|+ +.+++..
T Consensus 1 ml~~~~l~~~y~~-----~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~--I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 1 MIEIESLSRKWKN-----F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKH 72 (348)
T ss_dssp CEEEEEEEEECSS-----C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEE--EEETTEECTTSCHHHH
T ss_pred CEEEEEEEEEECC-----E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcE--EEECCEECCCCchhhC
Confidence 4789999999972 3 88888 8999999999999999999999999999999886 5555421
Q ss_pred ccccC----CCCCCCC----------------------------Cch--hhhccCCChhHHHHHHHHHHHccCCCEEEEc
Q 005344 257 EIGGD----GDVPHSG----------------------------IGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIID 302 (701)
Q Consensus 257 EIa~~----~~ip~~~----------------------------ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILD 302 (701)
.+++. ..+++.. +.. .+...-.|+|||||++||+||+++|++||+|
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD 152 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD 152 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 11111 1112210 000 0111225789999999999999999999999
Q ss_pred CCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 303 EIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 303 EPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|.+|++. ..+++
T Consensus 153 EP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~--~~g~~ 212 (348)
T 3d31_A 153 EPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI--QVGKP 212 (348)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE--EEECH
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE--EECCH
Confidence 99999999998554 235999999999999999999999999999994 34555
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.93 E-value=6.3e-26 Score=235.75 Aligned_cols=163 Identities=18% Similarity=0.169 Sum_probs=123.9
Q ss_pred hccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc----
Q 005344 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE---- 257 (701)
Q Consensus 185 ir~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E---- 257 (701)
+.+++++++||+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|+++|++|. +.+++.+-
T Consensus 17 ~~~~~l~~~~l~~~y~~-----~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~--I~~~g~~~~~~~ 89 (279)
T 2ihy_A 17 GSHMLIQLDQIGRMKQG-----KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT--VNLFGKMPGKVG 89 (279)
T ss_dssp --CEEEEEEEEEEEETT-----EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE--EEETTBCCC---
T ss_pred CCCceEEEEeEEEEECC-----EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeE--EEECCEEccccc
Confidence 34557999999999973 3689988 8999999999999999999999999999998876 45544210
Q ss_pred ---------cccC--------------------CCCCCCC----Cch---------h----------hhccCCChhHHHH
Q 005344 258 ---------IGGD--------------------GDVPHSG----IGR---------A----------RRMQVPNVNMQHS 285 (701)
Q Consensus 258 ---------Ia~~--------------------~~ip~~~----ig~---------~----------rr~~v~s~G~qQR 285 (701)
+++. ...+... ... . +...-.|+|||||
T Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqR 169 (279)
T 2ihy_A 90 YSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQR 169 (279)
T ss_dssp CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred CCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHH
Confidence 1110 0000000 000 0 0111257899999
Q ss_pred HHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEE--EEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 286 VMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQL--VGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 286 V~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtV--IiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++||+|++++|++||+||||++||+.++..+ ++.|.|| |++||+++.+..+||+++++.+|++ +..++.
T Consensus 170 v~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i--~~~g~~ 247 (279)
T 2ihy_A 170 VMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQS--IQQGAV 247 (279)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEE--EEEEEH
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEE--EEECCH
Confidence 9999999999999999999999999998554 3448999 9999999999999999999999998 444544
No 23
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.93 E-value=1.3e-25 Score=230.04 Aligned_cols=155 Identities=18% Similarity=0.178 Sum_probs=123.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----EEEEEcCCccccc
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-----RVVIVDTSNEIGG 260 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-----rViiVd~~~EIa~ 260 (701)
++++++|+++|+. ...+|+++ +.+|++++|+||||||||||||+|+|++.|++|. +|+++.+...+..
T Consensus 4 ~l~i~~l~~~y~~----~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~ 79 (253)
T 2nq2_C 4 ALSVENLGFYYQA----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPF 79 (253)
T ss_dssp EEEEEEEEEEETT----TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSS
T ss_pred eEEEeeEEEEeCC----CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCC
Confidence 6899999999971 23688888 8999999999999999999999999999999874 4678877543210
Q ss_pred C---------CCCCC---------------------CCCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcc
Q 005344 261 D---------GDVPH---------------------SGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTEL 308 (701)
Q Consensus 261 ~---------~~ip~---------------------~~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgL 308 (701)
. ...+. .++.. .+...-.|+|||||++||+|++++|++||+||||++|
T Consensus 80 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~L 159 (253)
T 2nq2_C 80 AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSAL 159 (253)
T ss_dssp CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTS
T ss_pred CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 0 00000 00100 0112235789999999999999999999999999999
Q ss_pred cHHHHHHH-------Hhc-CCEEEEEEcChhHHHHhcCcEEEEeCCe
Q 005344 309 EALAASTI-------AQR-GVQLVGTAHGMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 309 D~~a~~~l-------~e~-GvtVIiTTHd~~l~~~l~drvlvl~~G~ 347 (701)
|+.++..+ .+. |.|+|++||+.+.+..+||+++++.+|+
T Consensus 160 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe
Confidence 99998554 334 9999999999999999999999999998
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.93 E-value=2.2e-25 Score=227.49 Aligned_cols=162 Identities=20% Similarity=0.261 Sum_probs=120.6
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
-++++||+++|.. +...+|+++ +.+|++++|+||||||||||||+|+|++.|++|.
T Consensus 7 ~~~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 83 (247)
T 2ff7_A 7 DITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83 (247)
T ss_dssp EEEEEEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred ceeEEEEEEEeCC---CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHh
Confidence 4789999999931 124689988 8999999999999999999999999999998875
Q ss_pred EEEEEcCCcccccC------C-CCCCC------------CCch-hhh------------ccCCChhHHHHHHHHHHHccC
Q 005344 248 RVVIVDTSNEIGGD------G-DVPHS------------GIGR-ARR------------MQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 rViiVd~~~EIa~~------~-~ip~~------------~ig~-~rr------------~~v~s~G~qQRV~IArAL~~~ 295 (701)
+|+++.+...+-.. . ..+.. ++.. ..+ ..-.|+|||||++||+|++++
T Consensus 84 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 84 QVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp HEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 13333332211000 0 00000 0000 001 124688999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 296 PETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
|++||+||||++||+.+...+ ...|.|+|++||+++.+.. ||+++++.+|++ +..+..
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i--~~~g~~ 227 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKI--VEQGKH 227 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEE--EEEECH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEE--EEECCH
Confidence 999999999999999998554 1359999999999998865 999999999998 444444
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.93 E-value=1.7e-25 Score=228.36 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=119.1
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhc--CCCCCCcEEEEEcCCcc------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARM--LADDHMKRVVIVDTSNE------ 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGl--Lsp~~GkrViiVd~~~E------ 257 (701)
+++++||+++|+. ..+|+++ +.+|++++|+||||||||||+|+|+|+ +.|++|. +.+++.+-
T Consensus 3 ~l~~~~l~~~y~~-----~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~--I~~~g~~~~~~~~~ 75 (250)
T 2d2e_A 3 QLEIRDLWASIDG-----ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGE--ILLDGENILELSPD 75 (250)
T ss_dssp EEEEEEEEEEETT-----EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEE--EEETTEECTTSCHH
T ss_pred eEEEEeEEEEECC-----EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceE--EEECCEECCCCCHH
Confidence 5899999999973 4689988 899999999999999999999999998 7788776 55554310
Q ss_pred ------cccCCC----CCCC----------------------------------CCc-h--hhhccC-CChhHHHHHHHH
Q 005344 258 ------IGGDGD----VPHS----------------------------------GIG-R--ARRMQV-PNVNMQHSVMIE 289 (701)
Q Consensus 258 ------Ia~~~~----ip~~----------------------------------~ig-~--~rr~~v-~s~G~qQRV~IA 289 (701)
+++... ++.. ++. . .+...- .|+|||||++||
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iA 155 (250)
T 2d2e_A 76 ERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEIL 155 (250)
T ss_dssp HHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHH
T ss_pred HHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 111100 0000 010 0 001122 678999999999
Q ss_pred HHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHh-cCcEEEEeCCeEEEEecCcH
Q 005344 290 AVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIV-KNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 290 rAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l-~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++++|++||+||||++||+.++..+ .+.|.|||++||+.+++..+ ||+++++.+|++ +..++.
T Consensus 156 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i--~~~g~~ 228 (250)
T 2d2e_A 156 QLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRV--VATGGP 228 (250)
T ss_dssp HHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEE--EEEESH
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEE--EEEeCH
Confidence 999999999999999999999998554 23589999999999999888 599999999998 444554
No 26
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.93 E-value=3.3e-25 Score=223.42 Aligned_cols=162 Identities=16% Similarity=0.141 Sum_probs=123.6
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----EEEEEcCCccccc
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-----RVVIVDTSNEIGG 260 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-----rViiVd~~~EIa~ 260 (701)
++++++|+++|+. +...+|+++ +.+|++++|+||||||||||||+|+|++.|++|. +|.++.+...+..
T Consensus 6 ~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~ 82 (229)
T 2pze_A 6 EVVMENVTAFWEE---GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82 (229)
T ss_dssp EEEEEEEEECSST---TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCS
T ss_pred eEEEEEEEEEeCC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccC
Confidence 6899999999962 134688888 8999999999999999999999999999999875 3556666533210
Q ss_pred C--------CC-CCC---------CCCchh-h------------hccCCChhHHHHHHHHHHHccCCCEEEEcCCCCccc
Q 005344 261 D--------GD-VPH---------SGIGRA-R------------RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELE 309 (701)
Q Consensus 261 ~--------~~-ip~---------~~ig~~-r------------r~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD 309 (701)
. +. ... .++... . ...-.|+|||||++||+|++++|++||+||||++||
T Consensus 83 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD 162 (229)
T 2pze_A 83 GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 162 (229)
T ss_dssp BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSC
T ss_pred CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCC
Confidence 0 00 000 011000 0 013468899999999999999999999999999999
Q ss_pred HHHHHHHHh-------cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 310 ALAASTIAQ-------RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 310 ~~a~~~l~e-------~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+..+..+.+ .|.|+|++||+.+.+. .||+++++.+|++ +..+..
T Consensus 163 ~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i--~~~g~~ 213 (229)
T 2pze_A 163 VLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSS--YFYGTF 213 (229)
T ss_dssp HHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEE--EEEECH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEE--EEECCH
Confidence 999866521 3889999999999886 5999999999998 444444
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.93 E-value=2.4e-25 Score=230.25 Aligned_cols=164 Identities=13% Similarity=0.182 Sum_probs=121.9
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
.++++++|+++|+.. +...+|+++ +.+|++++|+||||||||||||+|+|++.|+.|.
T Consensus 15 ~~l~~~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 92 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNH--PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92 (271)
T ss_dssp CCEEEEEEEECCTTC--TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred ceEEEEEEEEEeCCC--CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHh
Confidence 368999999999731 124688888 8999999999999999999999999999998775
Q ss_pred -EEEEEcCCcccccC-------CCCCCCC-------------C---------ch----hhhccCCChhHHHHHHHHHHHc
Q 005344 248 -RVVIVDTSNEIGGD-------GDVPHSG-------------I---------GR----ARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 248 -rViiVd~~~EIa~~-------~~ip~~~-------------i---------g~----~rr~~v~s~G~qQRV~IArAL~ 293 (701)
+|+++.+...+... ....... + +. .+...-.|+||+||++||+||+
T Consensus 93 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 93 TQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred ccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 13344433211000 0000000 0 00 0111235789999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 294 HMPETIIIDEIGTELEALAASTI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++|++||+||||++||+.++..+ . +.|.|||++||+.+++.. ||+++++.+|++ +..+..
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i--~~~g~~ 240 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSV--CEQGTH 240 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEE--EEEECH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEE--EEECCH
Confidence 99999999999999999998654 1 238999999999999875 999999999998 444544
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.92 E-value=2.5e-25 Score=226.01 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=120.4
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------- 256 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------- 256 (701)
++++++|+++|+ +...+|+++ +.+|++++|+|||||||||||++|+|++.|++|. +.+++.+
T Consensus 1 ml~~~~l~~~y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 1 MLSARHVDFAYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE--ITIDGQPIDNISLENW 74 (243)
T ss_dssp CEEEEEEEECSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSC--EEETTEESTTTSCSCC
T ss_pred CEEEEEEEEEeC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE--EEECCEEhhhCCHHHH
Confidence 378999999994 134688888 8999999999999999999999999999999887 5555421
Q ss_pred --ccccCCCCCC---------------CCCchh---------------h------------hccCCChhHHHHHHHHHHH
Q 005344 257 --EIGGDGDVPH---------------SGIGRA---------------R------------RMQVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 257 --EIa~~~~ip~---------------~~ig~~---------------r------------r~~v~s~G~qQRV~IArAL 292 (701)
.+++....+. ...... . ...-.|+|||||++||+|+
T Consensus 75 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral 154 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154 (243)
T ss_dssp TTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred HhhEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHH
Confidence 0111000000 000000 0 0124678999999999999
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 293 NHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
+++|++||+||||++||+.++..+ ...|.|+|++||+.+.+. .||+++++.+|++ +..++..
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i--~~~g~~~ 222 (243)
T 1mv5_A 155 LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQI--TGSGKHN 222 (243)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEE--CCCSCHH
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEE--EEeCCHH
Confidence 999999999999999999876333 125999999999999886 5999999999998 5455543
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.92 E-value=3.5e-25 Score=228.40 Aligned_cols=159 Identities=17% Similarity=0.128 Sum_probs=118.9
Q ss_pred ccceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcC--CCCCCc-------------
Q 005344 186 RNRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARML--ADDHMK------------- 247 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlL--sp~~Gk------------- 247 (701)
...++++++|+++|+. ..+|+++ +.+|++++|+||||||||||||+|+|++ .|+.|+
T Consensus 17 ~~~~l~~~~l~~~y~~-----~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVED-----KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91 (267)
T ss_dssp ---CEEEEEEEEEETT-----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCH
T ss_pred CCceEEEEeEEEEECC-----EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCH
Confidence 3457899999999973 4689988 8999999999999999999999999994 566664
Q ss_pred ------EEEEEcCCcccc------------c------CC--CCCC-------------CCCc-h-hh-hcc-CCChhHHH
Q 005344 248 ------RVVIVDTSNEIG------------G------DG--DVPH-------------SGIG-R-AR-RMQ-VPNVNMQH 284 (701)
Q Consensus 248 ------rViiVd~~~EIa------------~------~~--~ip~-------------~~ig-~-~r-r~~-v~s~G~qQ 284 (701)
.|+++.+...+. . .+ .... .++. . .. ... -.|+||||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~Q 171 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKK 171 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHH
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHH
Confidence 134444432110 0 00 0000 0111 0 01 112 26889999
Q ss_pred HHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHh-cCcEEEEeCCeEE
Q 005344 285 SVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIV-KNPSLQILVGGIE 349 (701)
Q Consensus 285 RV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l-~drvlvl~~G~I~ 349 (701)
|++||+|++++|++||+||||++||+.++..+ ++.|.|||++||+.+++..+ ||+++++.+|++.
T Consensus 172 Rv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~ 244 (267)
T 2zu0_C 172 RNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 244 (267)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE
Confidence 99999999999999999999999999998655 23589999999999999886 9999999999983
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.92 E-value=4.5e-25 Score=232.67 Aligned_cols=163 Identities=21% Similarity=0.241 Sum_probs=123.4
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
..++++||+++|+. ...+|+++ |.+|++++|+||||||||||+++|+|++.|+.|.
T Consensus 52 ~~i~~~~vs~~y~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r 127 (306)
T 3nh6_A 52 GRIEFENVHFSYAD----GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLR 127 (306)
T ss_dssp CCEEEEEEEEESST----TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHH
T ss_pred CeEEEEEEEEEcCC----CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHh
Confidence 35889999999962 34689998 8999999999999999999999999999999875
Q ss_pred -EEEEEcCCcccccC-------CCCCCC------------CCchh-hh------------ccCCChhHHHHHHHHHHHcc
Q 005344 248 -RVVIVDTSNEIGGD-------GDVPHS------------GIGRA-RR------------MQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 -rViiVd~~~EIa~~-------~~ip~~------------~ig~~-rr------------~~v~s~G~qQRV~IArAL~~ 294 (701)
+|.++.|...+-.. ...+.. ++... .. -.-.|+||+||++||||++.
T Consensus 128 ~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 128 SHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp HTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred cceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 13344333211000 000000 00000 00 12368899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 295 MPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
+|++||+||||++||+.+...+ ...|.|+|++||+++.+.. ||++++|.+|+| +..|+..
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~i--v~~G~~~ 273 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCI--VERGRHE 273 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEE--EEEECHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEE--EEECCHH
Confidence 9999999999999999988654 2358999999999999976 999999999999 5566653
No 31
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.92 E-value=4.6e-25 Score=223.65 Aligned_cols=162 Identities=14% Similarity=0.174 Sum_probs=123.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----EEEEEcCCccccc
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-----RVVIVDTSNEIGG 260 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-----rViiVd~~~EIa~ 260 (701)
++++++|+++|+.. ...+|+++ +.+|++++|+||||||||||||+|+|++.|++|+ +|+++.+...+..
T Consensus 3 ~l~~~~l~~~y~~~---~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~ 79 (237)
T 2cbz_A 3 SITVRNATFTWARS---DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQN 79 (237)
T ss_dssp CEEEEEEEEESCTT---SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCS
T ss_pred eEEEEEEEEEeCCC---CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCC
Confidence 58899999999731 24688888 8999999999999999999999999999998875 2556666532210
Q ss_pred --------CC-CCCCC---------CCch-------------hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCccc
Q 005344 261 --------DG-DVPHS---------GIGR-------------ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELE 309 (701)
Q Consensus 261 --------~~-~ip~~---------~ig~-------------~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD 309 (701)
.. ..... .+.. .+...-.|+|||||++||+|++.+|++||+||||++||
T Consensus 80 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD 159 (237)
T 2cbz_A 80 DSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159 (237)
T ss_dssp EEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSC
T ss_pred cCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 00 00000 0000 01123468899999999999999999999999999999
Q ss_pred HHHHHHH---H------hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 310 ALAASTI---A------QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 310 ~~a~~~l---~------e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+..+..+ . ..|.|+|++||+.+.+. .||+++++.+|++ +..+..
T Consensus 160 ~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i--~~~g~~ 212 (237)
T 2cbz_A 160 AHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKI--SEMGSY 212 (237)
T ss_dssp HHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEE--EEEECH
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEE--EEeCCH
Confidence 9987554 1 24899999999999885 6999999999998 444444
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=2.3e-24 Score=222.42 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=120.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--------c
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--------E 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--------E 257 (701)
++++++|+++|+.. .+...+|+++ +. |++++|+||||||||||||+|+|++ |++|+ +.+++.+ .
T Consensus 1 ml~~~~l~~~y~~~-~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~--I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 1 MIQLKNVGITLSGK-GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN--IFINGMEVRKIRNYIR 75 (263)
T ss_dssp CEEEEEEEEEEEEE-TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEE--EEETTEEGGGCSCCTT
T ss_pred CEEEEEEEEEeCCC-CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcE--EEECCEECcchHHhhh
Confidence 47899999999730 0014688888 89 9999999999999999999999999 98876 4554421 1
Q ss_pred cc-cCCCCC--C---------------------------CCCc-h--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCC
Q 005344 258 IG-GDGDVP--H---------------------------SGIG-R--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEI 304 (701)
Q Consensus 258 Ia-~~~~ip--~---------------------------~~ig-~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEP 304 (701)
++ +....+ . .++. . .+...-.|+|||||++||+|++++|++||+|||
T Consensus 76 i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP 155 (263)
T 2pjz_A 76 YSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEP 155 (263)
T ss_dssp EEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred eEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 22 211000 0 0111 0 011123578999999999999999999999999
Q ss_pred CCcccHHHHHHH----HhcCCEEEEEEcChhHHHHhcC-cEEEEeCCeEEEEecCcH
Q 005344 305 GTELEALAASTI----AQRGVQLVGTAHGMTIDNIVKN-PSLQILVGGIESVTLGDE 356 (701)
Q Consensus 305 tsgLD~~a~~~l----~e~GvtVIiTTHd~~l~~~l~d-rvlvl~~G~I~~V~lgd~ 356 (701)
|++||+.++..+ .+...++|++||+.+.+..+|| +++.+.+|++ +..++.
T Consensus 156 ts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i--~~~g~~ 210 (263)
T 2pjz_A 156 FENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRL--QGPISV 210 (263)
T ss_dssp TTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEE--EEEEEH
T ss_pred ccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEE--EEecCH
Confidence 999999998655 2222299999999999999999 9999999998 444544
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.91 E-value=1.7e-24 Score=222.52 Aligned_cols=163 Identities=14% Similarity=0.197 Sum_probs=119.7
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
.++++++|+++|+.. ....+|+++ +.+|++++|+|||||||||||++|+|++.+ .|.
T Consensus 16 ~~l~i~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~ 92 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQ--TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIR 92 (260)
T ss_dssp CCEEEEEEEECCTTC--CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHH
T ss_pred CeEEEEEEEEEeCCC--CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHh
Confidence 468999999999731 013588888 899999999999999999999999999986 564
Q ss_pred -EEEEEcCCccccc--------CCCCCCC-----------CCchh-------------hhccCCChhHHHHHHHHHHHcc
Q 005344 248 -RVVIVDTSNEIGG--------DGDVPHS-----------GIGRA-------------RRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 -rViiVd~~~EIa~--------~~~ip~~-----------~ig~~-------------rr~~v~s~G~qQRV~IArAL~~ 294 (701)
+|.++.+...+-. .+..... ++... +...-.|+|||||++||+|+++
T Consensus 93 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~ 172 (260)
T 2ghi_A 93 SIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK 172 (260)
T ss_dssp TTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc
Confidence 1333333221100 0000000 00000 0112468899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 295 MPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+|++||+||||++||+.....+ ...|.|+|++||+.+.+. .||+++++.+|++ +..+..
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i--~~~g~~ 237 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKI--VEKGTH 237 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEE--EEEECH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEE--EEECCH
Confidence 9999999999999999998554 124899999999999886 5999999999998 444544
No 34
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.91 E-value=1.8e-24 Score=221.41 Aligned_cols=156 Identities=18% Similarity=0.237 Sum_probs=117.8
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
++++++|+++ .+|+++ +.+|++++|+||||||||||||+|+|++.|+ |.
T Consensus 4 ~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~ 73 (249)
T 2qi9_C 4 VMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLAL 73 (249)
T ss_dssp EEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHH
T ss_pred EEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhc
Confidence 5889999875 367887 8999999999999999999999999999998 85
Q ss_pred EEEEEcCCccccc---------CCCCCCC------------CCch--hhhccCCChhHHHHHHHHHHHccCCC-------
Q 005344 248 RVVIVDTSNEIGG---------DGDVPHS------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPE------- 297 (701)
Q Consensus 248 rViiVd~~~EIa~---------~~~ip~~------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~Pd------- 297 (701)
+++++.+...+.. ....... ++.. .+...-.|+|||||++||++++++|+
T Consensus 74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ 153 (249)
T 2qi9_C 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ 153 (249)
T ss_dssp HEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred eEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCe
Confidence 1333333221100 0000000 0000 01122357899999999999999999
Q ss_pred EEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 298 TIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 298 VIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
+||+||||++||+.++..+ .+.|.++|++||+.+++..+||+++++.+|++ +..+..
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i--~~~g~~ 217 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKM--LASGRR 217 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEE--EEEEEH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE--EEeCCH
Confidence 9999999999999998554 34599999999999999999999999999998 434444
No 35
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.91 E-value=4e-25 Score=221.71 Aligned_cols=155 Identities=13% Similarity=0.155 Sum_probs=114.1
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-------------EEE
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-------------RVV 250 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-------------rVi 250 (701)
..++++++|+++|+ . .+|+++ +.+|++++|+||||||||||||+|+|++.|+.|. .|.
T Consensus 8 ~~~l~~~~ls~~y~-----~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~ 81 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-----K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 81 (214)
T ss_dssp -CEEEEEEEEEESS-----S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEE
T ss_pred CceEEEEEEEEEeC-----C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEE
Confidence 34689999999997 3 688888 8999999999999999999999999999998775 133
Q ss_pred EEcCCcccccC-------------CCCCC-----------CCCch-hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCC
Q 005344 251 IVDTSNEIGGD-------------GDVPH-----------SGIGR-ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIG 305 (701)
Q Consensus 251 iVd~~~EIa~~-------------~~ip~-----------~~ig~-~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPt 305 (701)
++.+...+... ..... .++.. .+...-.|+|||||++||++++++|++||+||||
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 44443211000 00000 00100 0111235789999999999999999999999999
Q ss_pred CcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 306 TELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 306 sgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
++||+.++..+ ++.|.+||++||+.+++..+||+++. ..|+|
T Consensus 162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHK-YSTKI 210 (214)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGG-GBC--
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-eCCcc
Confidence 99999887544 34589999999999999888888763 35554
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.91 E-value=2e-24 Score=234.62 Aligned_cols=161 Identities=15% Similarity=0.197 Sum_probs=120.5
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-------- 257 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-------- 257 (701)
.++++||+++|+. +...+|+++ |.+|++++|+||||||||||||+|+|++. ++|+ +++++.+-
T Consensus 19 ~i~~~~l~~~y~~---~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~--I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 19 QMTVKDLTAKYTE---GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGE--IQIDGVSWDSITLEQW 92 (390)
T ss_dssp CEEEEEEEEESSS---SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEE--EEESSCBTTSSCHHHH
T ss_pred eEEEEEEEEEecC---CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeE--EEECCEECCcCChHHH
Confidence 5889999999952 234689988 89999999999999999999999999997 6665 45544310
Q ss_pred ---cccCC----CCC-----------C------------CCCch-hhhc-cC-----------CChhHHHHHHHHHHHcc
Q 005344 258 ---IGGDG----DVP-----------H------------SGIGR-ARRM-QV-----------PNVNMQHSVMIEAVENH 294 (701)
Q Consensus 258 ---Ia~~~----~ip-----------~------------~~ig~-~rr~-~v-----------~s~G~qQRV~IArAL~~ 294 (701)
+++.. .++ . .++.. ..+. .- .|+|||||++||+||++
T Consensus 93 rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 93 RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp HHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred hCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 11100 000 0 00100 0111 11 68999999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 295 MPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
+|++||+|||+++||+..+..+ . ..|.|+|++||+.+.+ ..||++++|.+|+| +..+++..
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i--~~~g~~~e 239 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKV--RQYDSILE 239 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEE--EEESSHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEE--EEECCHHH
Confidence 9999999999999999988655 2 3489999999998766 46999999999999 44566643
No 37
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.89 E-value=2.8e-23 Score=217.27 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=112.5
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----EEEEEcCCccccc
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-----RVVIVDTSNEIGG 260 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-----rViiVd~~~EIa~ 260 (701)
.+++++|++.+ ..+|+++ +.+|++++|+||||||||||||+|+|++.|+.|. +|.++.+...+..
T Consensus 40 ~l~~~~l~~~~-------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~ 112 (290)
T 2bbs_A 40 SLSFSNFSLLG-------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP 112 (290)
T ss_dssp ----------C-------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCS
T ss_pred eEEEEEEEEcC-------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCc
Confidence 57788888752 2578888 8999999999999999999999999999998775 3566766543210
Q ss_pred C------CCCCC-----------CCCch-hhh------------ccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccH
Q 005344 261 D------GDVPH-----------SGIGR-ARR------------MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEA 310 (701)
Q Consensus 261 ~------~~ip~-----------~~ig~-~rr------------~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~ 310 (701)
. ..... .++.. ... ..-.|+||+||++||++++++|++||+||||++||+
T Consensus 113 ~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~ 192 (290)
T 2bbs_A 113 GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192 (290)
T ss_dssp SBHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred ccHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCH
Confidence 0 00000 01100 000 134688999999999999999999999999999999
Q ss_pred HHHHHHHh-------cCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 311 LAASTIAQ-------RGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 311 ~a~~~l~e-------~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
..+..+.+ .|.++|++||+.+.+. .||+++++.+|++ +..++.
T Consensus 193 ~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i--~~~g~~ 242 (290)
T 2bbs_A 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSS--YFYGTF 242 (290)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEE--EEEECH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeE--EEeCCH
Confidence 99876622 3899999999999886 5999999999998 444554
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.88 E-value=2.2e-22 Score=227.48 Aligned_cols=163 Identities=15% Similarity=0.183 Sum_probs=122.7
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
..++++|++++|+.. ...+|+++ +++|++++|+||||||||||+++|+|++.|+.|+
T Consensus 340 ~~i~~~~v~~~y~~~---~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK---EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred CeEEEEEEEEEcCCC---CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHh
Confidence 368999999999731 24689988 8999999999999999999999999999999885
Q ss_pred -EEEEEcCCccccc--------CCCCCCC------------CCchh-hh------------ccCCChhHHHHHHHHHHHc
Q 005344 248 -RVVIVDTSNEIGG--------DGDVPHS------------GIGRA-RR------------MQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 248 -rViiVd~~~EIa~--------~~~ip~~------------~ig~~-rr------------~~v~s~G~qQRV~IArAL~ 293 (701)
++.++.|...+-. .+..+.. ++... .. -.-.|+|||||++||||+.
T Consensus 417 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 417 RHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred cCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 2333333321100 0000000 00000 00 1235789999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 294 HMPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++|++||+||||++||+.+...+ . ..|.|+|++||+.+.+. .||+++++.+|++ +..|+.
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i--~~~g~~ 562 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEI--IERGRH 562 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEE--EEECCH
Confidence 99999999999999999998554 1 24899999999999886 6999999999998 555655
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.88 E-value=6.5e-23 Score=231.85 Aligned_cols=164 Identities=21% Similarity=0.265 Sum_probs=123.6
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
..++++|++++|+. +...+|+++ +++|++++|+||||||||||+++|+|++.|+.|+
T Consensus 338 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r 414 (578)
T 4a82_A 338 GRIDIDHVSFQYND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 414 (578)
T ss_dssp CCEEEEEEEECSCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CeEEEEEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHh
Confidence 45899999999973 234689998 8999999999999999999999999999999875
Q ss_pred -EEEEEcCCcccccC-------CCCCCC------------CCch---------h----hhccCCChhHHHHHHHHHHHcc
Q 005344 248 -RVVIVDTSNEIGGD-------GDVPHS------------GIGR---------A----RRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 -rViiVd~~~EIa~~-------~~ip~~------------~ig~---------~----rr~~v~s~G~qQRV~IArAL~~ 294 (701)
+|.++.|...+-.. -..+.. ++.. . .+-.-.|+|||||++||||+.+
T Consensus 415 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 415 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred hheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 23444443211000 000000 0000 0 0011357899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 295 MPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
+|++||+||||++||+.+...+ ...|.|+|++||+++.+. .||+++++.+|++ +..|+.+
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~l~~G~i--~~~g~~~ 560 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHI--VETGTHR 560 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEE--EEEECHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEE--EEECCHH
Confidence 9999999999999999987554 235899999999999986 4999999999999 5566653
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=7.9e-23 Score=232.14 Aligned_cols=163 Identities=17% Similarity=0.279 Sum_probs=124.4
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.++++|++++|+. ...+|+++ +++|++++|+||||||||||+++|+|++.|+.|+
T Consensus 354 ~i~~~~v~~~y~~----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~ 429 (598)
T 3qf4_B 354 EIEFKNVWFSYDK----KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRS 429 (598)
T ss_dssp CEEEEEEECCSSS----SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEEEEEECCC----CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHh
Confidence 5899999999973 34689998 8999999999999999999999999999999875
Q ss_pred EEEEEcCCccccc--------CCC--CCCC---------CCch-hhhc------------cCCChhHHHHHHHHHHHccC
Q 005344 248 RVVIVDTSNEIGG--------DGD--VPHS---------GIGR-ARRM------------QVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 rViiVd~~~EIa~--------~~~--ip~~---------~ig~-~rr~------------~v~s~G~qQRV~IArAL~~~ 295 (701)
++.++.|...+-. .+. .... ++.. ...+ .-.|+|||||++||||+.++
T Consensus 430 ~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 430 SIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp HEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred ceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 2444444322100 000 0000 0000 0000 13588999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 296 PETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
|++||+||||++||+.+...+ ...|.|+|++||+.+.+.. ||+++++.+|++ +..|+.++
T Consensus 510 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i--~~~g~~~~ 575 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEI--VEMGKHDE 575 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSE--EECSCHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEE--EEECCHHH
Confidence 999999999999999988554 2359999999999999865 999999999999 66777643
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=1.1e-22 Score=230.72 Aligned_cols=165 Identities=15% Similarity=0.253 Sum_probs=124.3
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
..++++|++++|+. +...+|+++ +++|+.++|+||||||||||+++|+|++.|+.|+
T Consensus 340 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r 416 (587)
T 3qf4_A 340 GSVSFENVEFRYFE---NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416 (587)
T ss_dssp CCEEEEEEEECSSS---SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHH
T ss_pred CcEEEEEEEEEcCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHH
Confidence 35899999999963 234689998 9999999999999999999999999999999875
Q ss_pred -EEEEEcCCcccccC-------CCCCCC------------CC---------chh----hhccCCChhHHHHHHHHHHHcc
Q 005344 248 -RVVIVDTSNEIGGD-------GDVPHS------------GI---------GRA----RRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 -rViiVd~~~EIa~~-------~~ip~~------------~i---------g~~----rr~~v~s~G~qQRV~IArAL~~ 294 (701)
+|.++.|...+-.. -..+.. ++ |.. ++-.-.|+|||||++||||+.+
T Consensus 417 ~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 417 GHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp HHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred hheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 13333333211000 000000 00 000 0111357899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHHH
Q 005344 295 MPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEEA 358 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~a 358 (701)
+|++||+||||++||+.+...+ ...|.|+|++||+.+.+. .||+++++.+|++ +..|+.++
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i--~~~g~~~e 563 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKV--AGFGTHKE 563 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEE--EEEECHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEE--EEECCHHH
Confidence 9999999999999999988655 235899999999999985 8999999999999 65666543
No 42
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.88 E-value=2.3e-22 Score=227.33 Aligned_cols=163 Identities=15% Similarity=0.181 Sum_probs=122.4
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
..++++|++++|+.. ...+|+++ +++|++++|+||||||||||+++|+|++.|++|+
T Consensus 340 ~~i~~~~v~~~y~~~---~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b60_A 340 GDLEFRNVTFTYPGR---EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416 (582)
T ss_dssp CCEEEEEEEECSSSS---SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CcEEEEEEEEEcCCC---CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHH
Confidence 358999999999721 24689988 8999999999999999999999999999999875
Q ss_pred -EEEEEcCCccccc--------CCCCCCC------------CCchh-hh------------ccCCChhHHHHHHHHHHHc
Q 005344 248 -RVVIVDTSNEIGG--------DGDVPHS------------GIGRA-RR------------MQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 248 -rViiVd~~~EIa~--------~~~ip~~------------~ig~~-rr------------~~v~s~G~qQRV~IArAL~ 293 (701)
+|.++.|...+-. .+..+.. ++... .+ -.-.|+|||||++||||+.
T Consensus 417 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred hhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 1334433321100 0000100 00000 00 1235789999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 294 HMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
++|++||+||||++||+.+...+ ...|.|+|++||+.+.+. .||+++++.+|++ +..|+.
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i--~~~g~~ 562 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGII--VERGTH 562 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEE--EEEECH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEE--EEecCH
Confidence 99999999999999999998554 124999999999999886 6999999999998 555555
No 43
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.87 E-value=6.6e-22 Score=222.69 Aligned_cols=155 Identities=15% Similarity=0.178 Sum_probs=116.8
Q ss_pred ccceEEEEeEEEEECcccccccceec--cc-cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------EEEEEcCCc
Q 005344 186 RNRKMQVIGLTCRVGRAVAGSAEIIC--DL-VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------RVVIVDTSN 256 (701)
Q Consensus 186 r~~~IeI~nLs~rygr~v~G~~~~L~--dl-I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------rViiVd~~~ 256 (701)
....+++.++++.|+.. .+. ++ +.+|++++|+||||||||||+|+|+|++.|+.|. .+.++.+..
T Consensus 266 ~~~~l~~~~l~~~~~~~------~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~ 339 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGDF------QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRI 339 (538)
T ss_dssp CCEEEEECCEEEEETTE------EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSC
T ss_pred ccceEEEcceEEEECCE------EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhc
Confidence 34568899999999842 232 34 8999999999999999999999999999999885 344555432
Q ss_pred ccccC-----------CCC------------CCCCCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHH
Q 005344 257 EIGGD-----------GDV------------PHSGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEAL 311 (701)
Q Consensus 257 EIa~~-----------~~i------------p~~~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~ 311 (701)
..... ... ...++.. .+...-.|+|||||++||++|+++|++||+||||++||+.
T Consensus 340 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 340 FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp CCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred ccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 11000 000 0001110 0122346889999999999999999999999999999999
Q ss_pred HHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEeCC
Q 005344 312 AASTI--------AQRGVQLVGTAHGMTIDNIVKNPSLQILVG 346 (701)
Q Consensus 312 a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G 346 (701)
++..+ .+.|.+||++|||++++..+||++++|..+
T Consensus 420 ~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 420 ERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 88544 245999999999999999999999999863
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.87 E-value=6.1e-22 Score=224.46 Aligned_cols=156 Identities=15% Similarity=0.203 Sum_probs=118.3
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------E
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------R 248 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------r 248 (701)
++++||+++|+.. ....+|+++ +++|++++|+||||||||||+++|+|++.|++|+ +
T Consensus 342 i~~~~v~~~y~~~--~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~ 419 (595)
T 2yl4_A 342 LEFKNVHFAYPAR--PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSK 419 (595)
T ss_dssp EEEEEEEEECSSC--TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHS
T ss_pred EEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 8999999999731 123589988 9999999999999999999999999999998875 2
Q ss_pred EEEEcCCcccccC-------CCCCC-CCCchh------h---------h------c------cCCChhHHHHHHHHHHHc
Q 005344 249 VVIVDTSNEIGGD-------GDVPH-SGIGRA------R---------R------M------QVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 249 ViiVd~~~EIa~~-------~~ip~-~~ig~~------r---------r------~------~v~s~G~qQRV~IArAL~ 293 (701)
|.++.|...+-.. -..+. ...... + . . .-.|+|||||++||||++
T Consensus 420 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~ 499 (595)
T 2yl4_A 420 IGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL 499 (595)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHH
T ss_pred eEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHH
Confidence 3444443221000 00010 000000 0 0 0 235789999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 294 HMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
++|++||+||||++||+.+...+ ...|.|+|++||+.+.+. .||+++++.+|++
T Consensus 500 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i 559 (595)
T 2yl4_A 500 KNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKI 559 (595)
T ss_dssp HCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEE
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEE
Confidence 99999999999999999988554 124899999999999886 5999999999998
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.86 E-value=1.5e-21 Score=219.60 Aligned_cols=156 Identities=17% Similarity=0.156 Sum_probs=120.3
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----EEEEEcCCccc
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-----RVVIVDTSNEI 258 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-----rViiVd~~~EI 258 (701)
+..+++.+++++|+. ..++.+ +.+|++++|+||||||||||+|+|+|+++|+.|+ +|+++++....
T Consensus 285 ~~~l~~~~l~~~~~~------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~ 358 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKA 358 (538)
T ss_dssp CEEEEECCEEEEETT------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCC
T ss_pred CeEEEEeeEEEEECC------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcC
Confidence 457899999999973 134433 7899999999999999999999999999998874 47788775422
Q ss_pred ccCC----------------------CCCCCCCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHH
Q 005344 259 GGDG----------------------DVPHSGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAS 314 (701)
Q Consensus 259 a~~~----------------------~ip~~~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~ 314 (701)
.... .+...++.. .+...-.|+|+|||++||++++++|++||+||||++||+.++.
T Consensus 359 ~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~ 438 (538)
T 1yqt_A 359 DYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 438 (538)
T ss_dssp CCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHH
T ss_pred CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 1000 000111111 1122346889999999999999999999999999999999985
Q ss_pred HH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeC--CeE
Q 005344 315 TI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILV--GGI 348 (701)
Q Consensus 315 ~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~--G~I 348 (701)
.+ + +.|.+||++|||.+++..+||++++|.. |.+
T Consensus 439 ~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~ 482 (538)
T 1yqt_A 439 AVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKY 482 (538)
T ss_dssp HHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTE
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceE
Confidence 54 2 4599999999999999999999999985 444
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.86 E-value=7.2e-22 Score=222.22 Aligned_cols=153 Identities=17% Similarity=0.171 Sum_probs=110.4
Q ss_pred EEE-EeEEEEECcccccccceeccc--cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEE-------EEcCCc---
Q 005344 190 MQV-IGLTCRVGRAVAGSAEIICDL--VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVV-------IVDTSN--- 256 (701)
Q Consensus 190 IeI-~nLs~rygr~v~G~~~~L~dl--I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrVi-------iVd~~~--- 256 (701)
.++ +||+++|+. ...++.++ |.+|++++|+||||||||||||+|+|++.|+.|.... .+++..
T Consensus 21 ~~~~~~ls~~yg~----~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~ 96 (538)
T 1yqt_A 21 EQLEEDCVHRYGV----NAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQN 96 (538)
T ss_dssp ---CCCEEEECST----TCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHH
T ss_pred hhHhcCcEEEECC----ccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHH
Confidence 345 589999973 12367777 8999999999999999999999999999998887100 111110
Q ss_pred ----------ccccC-C---CCCC-------------------------CCCch--hhhccCCChhHHHHHHHHHHHccC
Q 005344 257 ----------EIGGD-G---DVPH-------------------------SGIGR--ARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 257 ----------EIa~~-~---~ip~-------------------------~~ig~--~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
.++.. + ..+. .++.. .+...-.|+|||||++||+||+++
T Consensus 97 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~ 176 (538)
T 1yqt_A 97 YFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRN 176 (538)
T ss_dssp HHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 00000 0 0000 00100 011223578999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCC
Q 005344 296 PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVG 346 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G 346 (701)
|++||+||||++||+..+..+ ++.|.+||++||+++++..+||+++++..|
T Consensus 177 P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 177 ATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999977443 456999999999999999999999998754
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.86 E-value=2.3e-21 Score=221.16 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=119.7
Q ss_pred cceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----EEEEEcCCccc
Q 005344 187 NRKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-----RVVIVDTSNEI 258 (701)
Q Consensus 187 ~~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-----rViiVd~~~EI 258 (701)
...+++.+++++|+. ..|+.+ +.+|++++|+||||||||||||+|+|++.|+.|. +|.++++....
T Consensus 355 ~~~l~~~~l~~~~~~------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~ 428 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKA 428 (607)
T ss_dssp CEEEEECCEEEECSS------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCC
T ss_pred ceEEEEeceEEEecc------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccC
Confidence 457899999999973 134433 7899999999999999999999999999998874 47788775432
Q ss_pred ccCCC-------C--CC-------------CCCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHH
Q 005344 259 GGDGD-------V--PH-------------SGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAS 314 (701)
Q Consensus 259 a~~~~-------i--p~-------------~~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~ 314 (701)
..... . .. .++.. .+...-+|+|+|||++||++|+++|++||+||||++||+.++.
T Consensus 429 ~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~ 508 (607)
T 3bk7_A 429 EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 508 (607)
T ss_dssp CCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHH
T ss_pred CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHH
Confidence 11000 0 00 01100 0122346889999999999999999999999999999999985
Q ss_pred HH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEeC--CeE
Q 005344 315 TI-------A-QRGVQLVGTAHGMTIDNIVKNPSLQILV--GGI 348 (701)
Q Consensus 315 ~l-------~-e~GvtVIiTTHd~~l~~~l~drvlvl~~--G~I 348 (701)
.+ . +.|.++|++|||.+++..+||+++++.. |.+
T Consensus 509 ~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~ 552 (607)
T 3bk7_A 509 AVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRH 552 (607)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTE
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceE
Confidence 44 2 4599999999999999999999999974 444
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.86 E-value=1.5e-21 Score=222.76 Aligned_cols=150 Identities=17% Similarity=0.186 Sum_probs=110.7
Q ss_pred EeEEEEECcccccccceeccc--cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEE-------EEcCCc-------
Q 005344 193 IGLTCRVGRAVAGSAEIICDL--VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVV-------IVDTSN------- 256 (701)
Q Consensus 193 ~nLs~rygr~v~G~~~~L~dl--I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrVi-------iVd~~~------- 256 (701)
+||+++|+.. ..+|.++ +.+|++++|+||||||||||||+|+|++.|+.|.... .+++..
T Consensus 95 ~~ls~~yg~~----~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~ 170 (607)
T 3bk7_A 95 EDCVHRYGVN----AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER 170 (607)
T ss_dssp GSEEEECSTT----CCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECCC----CeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhh
Confidence 7889999731 2367777 8999999999999999999999999999999887100 111110
Q ss_pred ------ccccC-CC---CCC-------------------------CCCch--hhhccCCChhHHHHHHHHHHHccCCCEE
Q 005344 257 ------EIGGD-GD---VPH-------------------------SGIGR--ARRMQVPNVNMQHSVMIEAVENHMPETI 299 (701)
Q Consensus 257 ------EIa~~-~~---ip~-------------------------~~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVI 299 (701)
.++.. +. .+. .++.. .+...-.|+|||||++||+||+++|++|
T Consensus 171 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lL 250 (607)
T 3bk7_A 171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFY 250 (607)
T ss_dssp HHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 00000 00 000 01100 0122235889999999999999999999
Q ss_pred EEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCC
Q 005344 300 IIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVG 346 (701)
Q Consensus 300 ILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G 346 (701)
|+||||++||+..+..+ .+.|.|||++||+++++..+||+++++..+
T Consensus 251 lLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 251 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999987443 456999999999999999999999999754
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.4e-21 Score=218.92 Aligned_cols=142 Identities=16% Similarity=0.132 Sum_probs=106.6
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----EEEEEcCCcccccCC--------CCCCC-------------
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK-----RVVIVDTSNEIGGDG--------DVPHS------------- 267 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk-----rViiVd~~~EIa~~~--------~ip~~------------- 267 (701)
+.+|++++|+||||||||||+|+|+|++.|+.|+ .+.++.+........ .....
T Consensus 375 ~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 454 (608)
T 3j16_B 375 FSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKP 454 (608)
T ss_dssp CCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHH
T ss_pred cccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3445899999999999999999999999999885 466776642111000 00000
Q ss_pred -CCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHh
Q 005344 268 -GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIV 336 (701)
Q Consensus 268 -~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l 336 (701)
++.. .+...-+|+|+|||++||++|+++|++||+||||++||+.++..+ .+.|.|||++|||++++..+
T Consensus 455 l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~ 534 (608)
T 3j16_B 455 LRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534 (608)
T ss_dssp HTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 0100 012234688999999999999999999999999999999887543 34699999999999999999
Q ss_pred cCcEEEEeC--CeEEEEecCcHH
Q 005344 337 KNPSLQILV--GGIESVTLGDEE 357 (701)
Q Consensus 337 ~drvlvl~~--G~I~~V~lgd~~ 357 (701)
||+++++.. |++ +..+.+.
T Consensus 535 aDrvivl~~~~g~~--~~~g~p~ 555 (608)
T 3j16_B 535 ADKVIVFEGIPSKN--AHARAPE 555 (608)
T ss_dssp CSEEEECEEETTTE--EECCCCE
T ss_pred CCEEEEEeCCCCeE--EecCChH
Confidence 999999985 666 4455553
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.3e-21 Score=219.95 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=108.9
Q ss_pred eEEEEECcccccccceeccc--cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEE---------EEEcCCc------
Q 005344 194 GLTCRVGRAVAGSAEIICDL--VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRV---------VIVDTSN------ 256 (701)
Q Consensus 194 nLs~rygr~v~G~~~~L~dl--I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrV---------iiVd~~~------ 256 (701)
+++++|+.. ...++.+ +.+|++++|+||||||||||||+|+|++.|+.|+-. .++.+..
T Consensus 82 ~~~~~Y~~~----~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~ 157 (608)
T 3j16_B 82 HVTHRYSAN----SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFT 157 (608)
T ss_dssp TEEEECSTT----SCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHH
T ss_pred CeEEEECCC----ceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhh
Confidence 467888732 2345554 889999999999999999999999999999998610 0111110
Q ss_pred -----ccc------cCCCCCC------------------------------CCCch--hhhccCCChhHHHHHHHHHHHc
Q 005344 257 -----EIG------GDGDVPH------------------------------SGIGR--ARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 257 -----EIa------~~~~ip~------------------------------~~ig~--~rr~~v~s~G~qQRV~IArAL~ 293 (701)
++. ....++. .++.. .+...-.|+|||||++||+||+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~ 237 (608)
T 3j16_B 158 KMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCV 237 (608)
T ss_dssp HHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHH
Confidence 000 0000000 00000 0122346889999999999999
Q ss_pred cCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCe
Q 005344 294 HMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~ 347 (701)
++|++||+||||++||+..+..+ ++.|.+||+++|+++++..+||+++++..|.
T Consensus 238 ~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred hCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999987543 4569999999999999999999999998654
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.83 E-value=4.3e-21 Score=228.10 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=66.4
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 277 VPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 277 v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
-.|+|||||++||+++.++|++||+||||++||+.+...+ .+.|.+||++||+.+++..+||+++.+.+|++
T Consensus 901 ~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~I 976 (986)
T 2iw3_A 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRM 976 (986)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBC
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 4688999999999999999999999999999999998655 45578999999999999999999999999987
No 52
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.83 E-value=1.1e-20 Score=212.70 Aligned_cols=150 Identities=12% Similarity=0.094 Sum_probs=107.4
Q ss_pred eEEEEECcccccccceeccc--cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEE---------EEcCCcc-----
Q 005344 194 GLTCRVGRAVAGSAEIICDL--VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVV---------IVDTSNE----- 257 (701)
Q Consensus 194 nLs~rygr~v~G~~~~L~dl--I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrVi---------iVd~~~E----- 257 (701)
+.+.|||.. .--|..+ +.+|++++|+||||||||||||+|+|++.|+.|.... .+.+..-
T Consensus 4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 467888842 1234455 7899999999999999999999999999999886100 1111100
Q ss_pred ------------cccCCCCCCC-------------------------CCch--hhhccCCChhHHHHHHHHHHHccCCCE
Q 005344 258 ------------IGGDGDVPHS-------------------------GIGR--ARRMQVPNVNMQHSVMIEAVENHMPET 298 (701)
Q Consensus 258 ------------Ia~~~~ip~~-------------------------~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdV 298 (701)
++.....+.. ++.. .+...-.|+|||||++||+||+++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~i 159 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADV 159 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSE
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 0000000000 0000 012233688999999999999999999
Q ss_pred EEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCe
Q 005344 299 IIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 299 IILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~ 347 (701)
||+||||++||+..+..+ . ..|.+||+++|+++++..+||+++++..|.
T Consensus 160 lllDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 160 YIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999987544 1 239999999999999999999999997643
No 53
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.82 E-value=1.8e-20 Score=229.38 Aligned_cols=163 Identities=18% Similarity=0.252 Sum_probs=122.7
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.++++||+++|+.. ....+|+++ +.+|++++|+||||||||||+++|+|++.|+.|+
T Consensus 1030 ~i~~~~v~~~y~~~--~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR--PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp CEEEEEEEBCCSCG--GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred cEEEEEEEEECCCC--CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 58999999999732 123589998 9999999999999999999999999999998775
Q ss_pred EEEEEcCCccccc--------CCCCCCCCCch------h---------hh------------ccCCChhHHHHHHHHHHH
Q 005344 248 RVVIVDTSNEIGG--------DGDVPHSGIGR------A---------RR------------MQVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 248 rViiVd~~~EIa~--------~~~ip~~~ig~------~---------rr------------~~v~s~G~qQRV~IArAL 292 (701)
++.+|+|...+-. .+. +...... . .. -...|+|+|||++|||++
T Consensus 1108 ~i~~v~Q~~~l~~~ti~eNi~~~~-~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A 1108 QLGIVSQEPILFDCSIAENIAYGD-NSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp SCEEEESSCCCCSSBHHHHHTCCC-SSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred ceEEECCCCccccccHHHHHhccC-CCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence 2344444321100 000 0000000 0 00 013578999999999999
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 293 NHMPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
..+|++||+||||++||+.+...+ ...|.|+|++||+++.+.. ||++++|.+|++ ++.|+.+
T Consensus 1187 ~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i--~~~g~~~ 1254 (1284)
T 3g5u_A 1187 VRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKV--KEHGTHQ 1254 (1284)
T ss_dssp HHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEE--EEEECHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEE--EEECCHH
Confidence 999999999999999999987554 2358999999999999854 999999999999 5566653
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.82 E-value=1.5e-20 Score=229.85 Aligned_cols=165 Identities=16% Similarity=0.226 Sum_probs=123.5
Q ss_pred ceEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc-----------------
Q 005344 188 RKMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK----------------- 247 (701)
Q Consensus 188 ~~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk----------------- 247 (701)
..++++|++++|+.. ....+|+++ +++|+.++|+||||||||||+++|+|++.|+.|+
T Consensus 386 g~i~~~~v~~~y~~~--~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r 463 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR--KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463 (1284)
T ss_dssp CCEEEEEEEECCSST--TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CeEEEEEEEEEcCCC--CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHH
Confidence 358999999999731 123689998 9999999999999999999999999999999875
Q ss_pred -EEEEEcCCcccccC--------CC--CCCC---------CCch-hh------------hccCCChhHHHHHHHHHHHcc
Q 005344 248 -RVVIVDTSNEIGGD--------GD--VPHS---------GIGR-AR------------RMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 248 -rViiVd~~~EIa~~--------~~--ip~~---------~ig~-~r------------r~~v~s~G~qQRV~IArAL~~ 294 (701)
+|.++.|...+-.. +. .... ++.. .. +-.-.|+|||||++||||+..
T Consensus 464 ~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~ 543 (1284)
T 3g5u_A 464 EIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543 (1284)
T ss_dssp HHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH
T ss_pred hheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc
Confidence 23444443211000 00 0000 0000 00 011357899999999999999
Q ss_pred CCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 295 MPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
+|++||+||||++||+.+...+ ...|.|+|++||+++.+.. ||+++++.+|++ +..|+.+
T Consensus 544 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i--~~~g~~~ 609 (1284)
T 3g5u_A 544 NPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVI--VEQGNHD 609 (1284)
T ss_dssp CCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCC--CCEECHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEE--EEECCHH
Confidence 9999999999999999887544 3469999999999999865 999999999998 5556553
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.81 E-value=9.3e-20 Score=216.76 Aligned_cols=156 Identities=14% Similarity=0.164 Sum_probs=116.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHh-cCC--C-CCCcEEEEEcCCc-c-cc
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIAR-MLA--D-DHMKRVVIVDTSN-E-IG 259 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaG-lLs--p-~~GkrViiVd~~~-E-Ia 259 (701)
.+...+++++|+. ..+|+++ +.+|++++|+||||||||||||+|+| .+. + ....+++++++.. . ..
T Consensus 435 ~L~~~~ls~~yg~-----~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~ 509 (986)
T 2iw3_A 435 DLCNCEFSLAYGA-----KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHS 509 (986)
T ss_dssp EEEEEEEEEEETT-----EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCT
T ss_pred eeEEeeEEEEECC-----EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEccccccccc
Confidence 3556689999973 4688888 89999999999999999999999994 331 1 0112355665431 1 00
Q ss_pred cC-------CCC-----------CCCCCc-h--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--
Q 005344 260 GD-------GDV-----------PHSGIG-R--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-- 316 (701)
Q Consensus 260 ~~-------~~i-----------p~~~ig-~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-- 316 (701)
.. ... ...++. . .+...-.|+|||||++||++++++|++||+||||++||+.++..+
T Consensus 510 ~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~ 589 (986)
T 2iw3_A 510 DTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVN 589 (986)
T ss_dssp TSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence 00 000 001221 0 112334688999999999999999999999999999999998655
Q ss_pred --HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 317 --AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 317 --~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
.+.|.++|++||+.+++..+||+++.+.+|++.
T Consensus 590 ~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 590 YLNTCGITSITISHDSVFLDNVCEYIINYEGLKLR 624 (986)
T ss_dssp HHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeee
Confidence 447999999999999999999999999999983
No 56
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.81 E-value=6.2e-20 Score=225.08 Aligned_cols=162 Identities=19% Similarity=0.255 Sum_probs=123.4
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC----------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS---------- 255 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~---------- 255 (701)
.++++||+++|+.. ....+|+++ |++|+.++|+||+|||||||+++|.|++.|++|+ +.+|+.
T Consensus 1076 ~I~f~nVsf~Y~~~--~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~--I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER--PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE--IFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CEEEEEEEECCTTS--CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSE--EEETTEETTTBCHHHH
T ss_pred eEEEEEEEEeCCCC--CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCE--EEECCEEhhhCCHHHH
Confidence 58899999999631 234689998 9999999999999999999999999999999986 555543
Q ss_pred ----------cccc--------cCCCCC-CC------------CCchh-h------hc------cCCChhHHHHHHHHHH
Q 005344 256 ----------NEIG--------GDGDVP-HS------------GIGRA-R------RM------QVPNVNMQHSVMIEAV 291 (701)
Q Consensus 256 ----------~EIa--------~~~~ip-~~------------~ig~~-r------r~------~v~s~G~qQRV~IArA 291 (701)
+.+- ..+..| .. ++... . .. .-.|+|||||++||||
T Consensus 1152 R~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp HTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred HhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 2110 001001 00 00000 0 00 1247799999999999
Q ss_pred HccCCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 292 ENHMPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 292 L~~~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
+..+|++|||||||++||+.+-+.+ . ..|+|+|+++|.++.+ ..||++++|.+|+| ++.|+.+
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi-~~aD~I~Vld~G~I--vE~Gth~ 1300 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTV-MNADCIAVVSNGTI--IEKGTHT 1300 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTT-TTCSEEEEESSSSE--EEEECHH
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHH-HhCCEEEEEECCEE--EEECCHH
Confidence 9999999999999999999887554 2 2589999999999877 46999999999999 7777773
No 57
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.80 E-value=5.5e-20 Score=195.06 Aligned_cols=222 Identities=14% Similarity=0.148 Sum_probs=143.4
Q ss_pred HHHHhhccCCCCeEEEEEeCCCceEEecCCC-ceeeccc---cCCHHHHHHHHHHHhccccc-----CCCccc---cccc
Q 005344 113 RRELCMHRELGDLIEVVMDLGRKPLARFPSG-DWVISEQ---IVKHEDLKHAISKVGDFSDD-----NRSGID---RSLH 180 (701)
Q Consensus 113 r~~l~~~~~~~~l~EI~L~~GR~p~~r~~~~-~~~l~~~---~vt~edl~~~i~~I~~fs~d-----~R~Gi~---rtgh 180 (701)
...|..+..++.+.||+++.+..+.....++ ....... .++..++..++..++.+... ..+.+. ..+.
T Consensus 33 ~~~l~~~l~d~~v~dI~in~~~~v~v~~~g~~~~~~~~~~~~~lt~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 112 (330)
T 2pt7_A 33 EELFGDFLKMENITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLANGE 112 (330)
T ss_dssp HHHHHHHHTSSSEEEEEECSSSEEEEEETTSCEEEEECTTCGGGSHHHHHHHHHHHHHHTTCCCCSSSCCEEEEECTTSC
T ss_pred ccchHHHhcCCCCeEEEEcCCCEEEEEECCceEEEecCCcccCCCHHHHHHHHHHHHHHhCCCCCCCCCeeEEEEcCCCc
Confidence 3456666777899999999865444444444 4444332 58999999999998765421 111121 3456
Q ss_pred hhhhhccceEEE---EeEEEEECcccccccc------------------eeccc---cccCCEEEEEcCCCCcHHHHHHH
Q 005344 181 RISAIRNRKMQV---IGLTCRVGRAVAGSAE------------------IICDL---VEGGGSILVIGPPGVGKTTLIRE 236 (701)
Q Consensus 181 RIs~ir~~~IeI---~nLs~rygr~v~G~~~------------------~L~dl---I~~GeiilIIGPNGSGKTTLLR~ 236 (701)
|+..+.+....- ..++++.... +... +++++ +.+|++++|+||||||||||+++
T Consensus 113 Ri~~~l~~p~~~~~~~~~~ir~~~~--~~i~l~~l~~~g~~~~v~fy~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~ 190 (330)
T 2pt7_A 113 RVQIVLSPVTVNDETISISIRIPSK--TTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKS 190 (330)
T ss_dssp EEEEECTTTSSSTTCCEEEEECCCC--CCCCHHHHHHTTTTTTSTTHHHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHH
T ss_pred EEEEEEcCCccCCCCceEEEeCCCC--CCCCHHHHHhCCCcCchhhHHHHHhhhhhhccCCCEEEEECCCCCCHHHHHHH
Confidence 776544111000 0122221100 1111 45555 88999999999999999999999
Q ss_pred HHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH
Q 005344 237 IARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI 316 (701)
Q Consensus 237 IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l 316 (701)
|+|++.|+.|. +.+++..++.... .. ..++. +..+|++|+++|+++|.++|++||+|||++. +....-..
T Consensus 191 l~g~~~~~~g~--i~i~~~~e~~~~~-~~-~~i~~-----~~ggg~~~r~~la~aL~~~p~ilildE~~~~-e~~~~l~~ 260 (330)
T 2pt7_A 191 IMEFIPKEERI--ISIEDTEEIVFKH-HK-NYTQL-----FFGGNITSADCLKSCLRMRPDRIILGELRSS-EAYDFYNV 260 (330)
T ss_dssp GGGGSCTTSCE--EEEESSCCCCCSS-CS-SEEEE-----ECBTTBCHHHHHHHHTTSCCSEEEECCCCST-HHHHHHHH
T ss_pred HhCCCcCCCcE--EEECCeecccccc-ch-hEEEE-----EeCCChhHHHHHHHHhhhCCCEEEEcCCChH-HHHHHHHH
Confidence 99999998776 7777765543110 00 00110 1126899999999999999999999999974 22222122
Q ss_pred HhcC-CEEEEEEcChhHHHHhcCcEEEEeCCe
Q 005344 317 AQRG-VQLVGTAHGMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 317 ~e~G-vtVIiTTHd~~l~~~l~drvlvl~~G~ 347 (701)
...| .++|+|+|+.+ +...+|+++.+..|.
T Consensus 261 ~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 261 LCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp HHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred HhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 3345 47999999999 667889988887774
No 58
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.80 E-value=1.5e-19 Score=221.83 Aligned_cols=164 Identities=17% Similarity=0.229 Sum_probs=123.2
Q ss_pred eEEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc------------------
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK------------------ 247 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk------------------ 247 (701)
.++++|++++|+.. ....+|+++ +++|+.++|+||+|||||||++.|.|++.|..|.
T Consensus 415 ~I~~~nvsF~Y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 415 DITVENVHFTYPSR--PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CEEEEEEEECCSSS--TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred cEEEEEeeeeCCCC--CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhh
Confidence 58899999999732 234689998 9999999999999999999999999999999886
Q ss_pred EEEEEcCCcccccC-------CCCCCC------------CCch-------hhhc------cCCChhHHHHHHHHHHHccC
Q 005344 248 RVVIVDTSNEIGGD-------GDVPHS------------GIGR-------ARRM------QVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 248 rViiVd~~~EIa~~-------~~ip~~------------~ig~-------~rr~------~v~s~G~qQRV~IArAL~~~ 295 (701)
+|.+|.|..-+-.. -+.+.. ++.. ...+ .-.|+|||||++||||+..+
T Consensus 493 ~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~ 572 (1321)
T 4f4c_A 493 NVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRN 572 (1321)
T ss_dssp HEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTC
T ss_pred cccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccC
Confidence 24444443221000 000100 0000 0000 12578999999999999999
Q ss_pred CCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEeCCeEEEEecCcHH
Q 005344 296 PETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQILVGGIESVTLGDEE 357 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~~V~lgd~~ 357 (701)
|+++||||||++||+.+...+ ..+|.|+|++||..+.+ ..||++++|.+|+| ++.|+-+
T Consensus 573 ~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i-~~aD~Iivl~~G~i--ve~Gth~ 637 (1321)
T 4f4c_A 573 PKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTI-RNADLIISCKNGQV--VEVGDHR 637 (1321)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTT-TTCSEEEEEETTEE--EEEECHH
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHH-HhCCEEEEeeCCee--eccCCHH
Confidence 999999999999999875433 23699999999999987 57999999999999 6666653
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.80 E-value=1.9e-19 Score=206.64 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=67.6
Q ss_pred CCChhHHHHHHHHHHHccCCC--EEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE----
Q 005344 277 VPNVNMQHSVMIEAVENHMPE--TIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI---- 343 (701)
Q Consensus 277 v~s~G~qQRV~IArAL~~~Pd--VIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl---- 343 (701)
-.|+|||||++||+||+++|+ +||+||||++||+..+..+ ++.|.|||++|||++++. .||+++++
T Consensus 202 ~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l~~g~ 280 (670)
T 3ux8_A 202 TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGA 280 (670)
T ss_dssp GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEECSSS
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEecccc
Confidence 368899999999999999998 9999999999999887543 567999999999999876 59999999
Q ss_pred --eCCeEEEEecCcHHH
Q 005344 344 --LVGGIESVTLGDEEA 358 (701)
Q Consensus 344 --~~G~I~~V~lgd~~a 358 (701)
..|++ +..++.+.
T Consensus 281 ~~~~G~i--~~~g~~~~ 295 (670)
T 3ux8_A 281 GIHGGEV--VAAGTPEE 295 (670)
T ss_dssp GGGCCSE--EEEECHHH
T ss_pred cccCCEE--EEecCHHH
Confidence 78888 55555543
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.74 E-value=7e-18 Score=193.60 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=67.0
Q ss_pred CCChhHHHHHHHHHHHccCC---CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE---
Q 005344 277 VPNVNMQHSVMIEAVENHMP---ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI--- 343 (701)
Q Consensus 277 v~s~G~qQRV~IArAL~~~P---dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl--- 343 (701)
-.|+|||||++||+||+++| ++||+||||++||+.....+ ++.|.|||++||+++++. .||++++|
T Consensus 543 ~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~ 621 (670)
T 3ux8_A 543 TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPE 621 (670)
T ss_dssp GCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESS
T ss_pred hCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCC
Confidence 36889999999999999887 49999999999999988543 456999999999999875 69999999
Q ss_pred ---eCCeEEEEecCcHH
Q 005344 344 ---LVGGIESVTLGDEE 357 (701)
Q Consensus 344 ---~~G~I~~V~lgd~~ 357 (701)
..|+| +..|+++
T Consensus 622 ~g~~~G~i--~~~g~~~ 636 (670)
T 3ux8_A 622 GGDRGGQI--VAVGTPE 636 (670)
T ss_dssp SGGGCCEE--EEEECHH
T ss_pred cCCCCCEE--EEecCHH
Confidence 78998 5566653
No 61
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.72 E-value=9e-18 Score=180.31 Aligned_cols=216 Identities=16% Similarity=0.224 Sum_probs=138.4
Q ss_pred CCeEEEEEeCCCceEEecCCCceeeccccCCHHHHHHHHHHHhccc------ccCCC--cc-ccccc--hhhhhccceEE
Q 005344 123 GDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFS------DDNRS--GI-DRSLH--RISAIRNRKMQ 191 (701)
Q Consensus 123 ~~l~EI~L~~GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs------~d~R~--Gi-~rtgh--RIs~ir~~~Ie 191 (701)
.+...|++..|.++..+..+....+...+++.+++..++..+..-. ..... .+ .++++ |++.+....
T Consensus 13 ~~aSDIhi~~~~~~~~ri~G~l~~~~~~~~~~~~l~~~i~~i~~~~~~~~~~~~~~~d~~~~~~~~~r~Rv~~~~~~~-- 90 (356)
T 3jvv_A 13 QGASDLHLSAGLPPMIRVDGDVRRINLPPLEHKQVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVARFRVNAFNQNR-- 90 (356)
T ss_dssp TTCSEEEEETTBCCEEEETTEEEECSSCCBCHHHHHHHHHHHCCHHHHHHHHHHSCEEEEEEETTTEEEEEEEEEETT--
T ss_pred CCCceEEEECCCCEEEEECCEEEEecCCCCCHHHHHHHHHHHhcHhhhhhhhhcCCeeEEEEcCCCcEEEEEEEeeCC--
Confidence 4577899999999999987766666666789999999987764311 10000 01 12233 444443322
Q ss_pred EEeEEEEECccc------ccccceeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCC
Q 005344 192 VIGLTCRVGRAV------AGSAEIICDL-VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDV 264 (701)
Q Consensus 192 I~nLs~rygr~v------~G~~~~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~i 264 (701)
-.++++||-... .|...+++++ +.+|++++|+|||||||||||++|+|++.++.+.+|+.+.+..+.......
T Consensus 91 g~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~ 170 (356)
T 3jvv_A 91 GAGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK 170 (356)
T ss_dssp EEEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS
T ss_pred CcEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc
Confidence 245666763221 1122233444 567889999999999999999999999988766677777766554321100
Q ss_pred CCCCCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChhHHHHhcCcEEEEe
Q 005344 265 PHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNPSLQIL 344 (701)
Q Consensus 265 p~~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~l~~~l~drvlvl~ 344 (701)
.......+........-+|+++|+++|++|++|||+..........+++.|.++|+|+|+.+.+ ..+++++.+.
T Consensus 171 -----~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 171 -----CLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp -----SEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSHH-HHHHHHHHTS
T ss_pred -----cceeeeeeccccCCHHHHHHHHhhhCcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChHH-HHHHHHhhhc
Confidence 0000011111111223489999999999999999994322223344577899999999999988 6788887664
Q ss_pred CC
Q 005344 345 VG 346 (701)
Q Consensus 345 ~G 346 (701)
.|
T Consensus 245 ~~ 246 (356)
T 3jvv_A 245 PA 246 (356)
T ss_dssp CH
T ss_pred Cc
Confidence 43
No 62
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.71 E-value=6.6e-19 Score=168.57 Aligned_cols=121 Identities=12% Similarity=0.131 Sum_probs=81.3
Q ss_pred cccCCEEEEEcCCCCcHHHHHH------------HHHhcCCCCCCcEEEEEcCC--cccccC-CCCCCCCC-chhhhccC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIR------------EIARMLADDHMKRVVIVDTS--NEIGGD-GDVPHSGI-GRARRMQV 277 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR------------~IaGlLsp~~GkrViiVd~~--~EIa~~-~~ip~~~i-g~~rr~~v 277 (701)
+.+|++++|+||||||||||++ .+.|++.++.|. ..+... .+.... ......+. ........
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 83 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDEND--QTVTGAAFDVLHYIVSKRLQLGKLTVVDATNV 83 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTC--GGGHHHHHHHHHHHHHHHHHTTCCEEEESCCC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccc--hhhHHHHHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 5689999999999999999999 677766665443 111100 000000 00000000 00112223
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHH----------------HHHH-------HhcCCEEEEEEcChhHHH
Q 005344 278 PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALA----------------ASTI-------AQRGVQLVGTAHGMTIDN 334 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a----------------~~~l-------~e~GvtVIiTTHd~~l~~ 334 (701)
.+.|++|+++||+++..+|++|++|||+++||+.. ...+ ++.|.++|++||+++++.
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~ 163 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVE 163 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhh
Confidence 46799999999999999999999999999999983 2222 456999999999999886
Q ss_pred Hh
Q 005344 335 IV 336 (701)
Q Consensus 335 ~l 336 (701)
.+
T Consensus 164 ~~ 165 (171)
T 4gp7_A 164 EV 165 (171)
T ss_dssp HE
T ss_pred hh
Confidence 53
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.69 E-value=2.4e-16 Score=169.08 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=63.4
Q ss_pred CChhHHHHHHHHHHHccCC--CEEEEcCCCCcccHHHHHHH----Hh--cCCEEEEEEcChhHHHHhcCcEEEE----eC
Q 005344 278 PNVNMQHSVMIEAVENHMP--ETIIIDEIGTELEALAASTI----AQ--RGVQLVGTAHGMTIDNIVKNPSLQI----LV 345 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~~~P--dVIILDEPtsgLD~~a~~~l----~e--~GvtVIiTTHd~~l~~~l~drvlvl----~~ 345 (701)
.|+|+|||++||++++.+| ++||+||||++||+.....+ .+ .|.+||++||+..++. +||+++++ .+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hcCeEEEEEEeccC
Confidence 5899999999999999999 99999999999999998655 22 4899999999998875 69999999 89
Q ss_pred CeEE
Q 005344 346 GGIE 349 (701)
Q Consensus 346 G~I~ 349 (701)
|++.
T Consensus 375 G~~~ 378 (415)
T 4aby_A 375 GRTV 378 (415)
T ss_dssp TEEE
T ss_pred CceE
Confidence 9874
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.68 E-value=9e-17 Score=189.13 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=66.4
Q ss_pred CChhHHHHHHHHHHHccC---CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE----
Q 005344 278 PNVNMQHSVMIEAVENHM---PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI---- 343 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~~~---PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl---- 343 (701)
+|+|+|||++||++|+++ |++|||||||++||+.+...+ .+.|.+||+++|+++++ .+||+++.|
T Consensus 731 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~ 809 (842)
T 2vf7_A 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGA 809 (842)
T ss_dssp CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSS
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCC
Confidence 578999999999999996 799999999999999998554 46799999999999999 689999999
Q ss_pred --eCCeEEEEecCcH
Q 005344 344 --LVGGIESVTLGDE 356 (701)
Q Consensus 344 --~~G~I~~V~lgd~ 356 (701)
..|+| +..++.
T Consensus 810 g~~~G~I--v~~g~~ 822 (842)
T 2vf7_A 810 GEDGGRL--VAQGTP 822 (842)
T ss_dssp GGGCCSE--EEEECH
T ss_pred CCCCCEE--EEEcCH
Confidence 67888 445555
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.6e-17 Score=183.86 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=100.9
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCC-cEEEEEcCC--cccccC-CCC---CC--------CCCch-------
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHM-KRVVIVDTS--NEIGGD-GDV---PH--------SGIGR------- 271 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~G-krViiVd~~--~EIa~~-~~i---p~--------~~ig~------- 271 (701)
+.+|++++|+||||||||||+|+|+|++.++.| + ++++++. ..++.. +.. +. ..++.
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~-pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~ 213 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQ-PLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGAT 213 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCC-CEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCC
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcccccCCce-eEEEcCCccCCeeeeccchhhcccccccchhhhhcccccccCcc
Confidence 789999999999999999999999999998888 5 2233331 111110 000 00 00000
Q ss_pred --------hhhc--------cCCChhHHHHHHHHHH--HccCCCE----EEEcC-CCCcccHHHHHHH----HhcCCEEE
Q 005344 272 --------ARRM--------QVPNVNMQHSVMIEAV--ENHMPET----IIIDE-IGTELEALAASTI----AQRGVQLV 324 (701)
Q Consensus 272 --------~rr~--------~v~s~G~qQRV~IArA--L~~~PdV----IILDE-PtsgLD~~a~~~l----~e~GvtVI 324 (701)
...+ .-.++|++||++||++ ++.+|++ ||+|| |+++||+. ...+ .+.|.++|
T Consensus 214 ~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tvi 292 (460)
T 2npi_A 214 LLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIM 292 (460)
T ss_dssp SSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEE
T ss_pred hHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEE
Confidence 0001 1135699999999999 9999999 99999 99999987 3322 45589999
Q ss_pred EEEcChh------HHHHhcCc-----EEEEe-CCeEEEEecCcHHH
Q 005344 325 GTAHGMT------IDNIVKNP-----SLQIL-VGGIESVTLGDEEA 358 (701)
Q Consensus 325 iTTHd~~------l~~~l~dr-----vlvl~-~G~I~~V~lgd~~a 358 (701)
+++|+.. ++..+||+ ++++. .|++ + .++...
T Consensus 293 iVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~i--v-~g~~~~ 335 (460)
T 2npi_A 293 LVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGV--S-AVDDVY 335 (460)
T ss_dssp EEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTC--C-CCCHHH
T ss_pred EEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcE--E-ECCHHH
Confidence 9999988 77889999 99999 9998 4 555543
No 66
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.65 E-value=6.4e-16 Score=183.33 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=68.0
Q ss_pred CCChhHHHHHHHHHHHccCC---CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE---
Q 005344 277 VPNVNMQHSVMIEAVENHMP---ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI--- 343 (701)
Q Consensus 277 v~s~G~qQRV~IArAL~~~P---dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl--- 343 (701)
-+|+||+||++||++|+++| ++|||||||++||+.....+ .+.|.|||+++|+++++.. ||+++.|
T Consensus 805 ~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~ 883 (916)
T 3pih_A 805 TLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPE 883 (916)
T ss_dssp TCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCC
Confidence 35889999999999999875 79999999999999988544 4579999999999998865 9999999
Q ss_pred ---eCCeEEEEecCcHHH
Q 005344 344 ---LVGGIESVTLGDEEA 358 (701)
Q Consensus 344 ---~~G~I~~V~lgd~~a 358 (701)
..|+| +..|+++.
T Consensus 884 gg~~~G~I--v~~Gtpee 899 (916)
T 3pih_A 884 GGKEGGYI--VATGTPEE 899 (916)
T ss_dssp SGGGCCEE--EEEESHHH
T ss_pred CCCCCCEE--EEEcCHHH
Confidence 78888 66777643
No 67
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.64 E-value=2.1e-16 Score=153.50 Aligned_cols=126 Identities=19% Similarity=0.143 Sum_probs=83.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCC-CCc------------EEEEEcCCcccccCCCCCCCCCc----hhhhccCCChh
Q 005344 219 SILVIGPPGVGKTTLIREIARMLADD-HMK------------RVVIVDTSNEIGGDGDVPHSGIG----RARRMQVPNVN 281 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp~-~Gk------------rViiVd~~~EIa~~~~ip~~~ig----~~rr~~v~s~G 281 (701)
.++|+||||||||||+++|+|++... .|. +++++.+... .....+...... ..+.....|+|
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lSgG 80 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE-GKKKIFSSKFFTSKKLVGSYGVNVQYF 80 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT-CCEEEEEETTCCCSSEETTEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc-HHHHHHHhhcCCccccccccccCcCHH
Confidence 68999999999999999999997421 111 1111111000 000000000000 01112235679
Q ss_pred HHHHHHHHHH-----HccCCCEEEEcC--CCCcccHHHHHHH----HhcCCEEEEEE---cChhHHHHhcCcEEEEeCCe
Q 005344 282 MQHSVMIEAV-----ENHMPETIIIDE--IGTELEALAASTI----AQRGVQLVGTA---HGMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 282 ~qQRV~IArA-----L~~~PdVIILDE--PtsgLD~~a~~~l----~e~GvtVIiTT---Hd~~l~~~l~drvlvl~~G~ 347 (701)
|+||++||++ +..+|++||+|| |++++|+.....+ .+.+.++|+++ |+..++..+|++. +|+
T Consensus 81 ~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r~----~~~ 156 (178)
T 1ye8_A 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP----GAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCT----TCE
T ss_pred HHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhcC----CcE
Confidence 9999999996 999999999999 9999999887655 34577788888 4889999999872 456
Q ss_pred EE
Q 005344 348 IE 349 (701)
Q Consensus 348 I~ 349 (701)
+.
T Consensus 157 i~ 158 (178)
T 1ye8_A 157 LI 158 (178)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 68
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.64 E-value=6.7e-16 Score=165.65 Aligned_cols=70 Identities=16% Similarity=0.092 Sum_probs=63.3
Q ss_pred CChhHHHHHHHHHHHc------cCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEe
Q 005344 278 PNVNMQHSVMIEAVEN------HMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQIL 344 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~------~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~ 344 (701)
.|+|++||++||++++ ++|++||+||||++||+.....+ .+.|.|||++||++++ ...||+++++.
T Consensus 280 LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~~~~l~ 358 (365)
T 3qf7_A 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDRKLRIT 358 (365)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSCEEEEE
T ss_pred CCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEEEEEE
Confidence 6889999999999999 79999999999999999998554 4569999999999998 56799999999
Q ss_pred CCeE
Q 005344 345 VGGI 348 (701)
Q Consensus 345 ~G~I 348 (701)
+|++
T Consensus 359 ~G~i 362 (365)
T 3qf7_A 359 GGVV 362 (365)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 9987
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.64 E-value=1e-17 Score=166.99 Aligned_cols=125 Identities=16% Similarity=0.161 Sum_probs=78.2
Q ss_pred ccceeccccccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEE-EEc-C----CcccccCCCCCCCCC---ch--h--
Q 005344 206 SAEIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVV-IVD-T----SNEIGGDGDVPHSGI---GR--A-- 272 (701)
Q Consensus 206 ~~~~L~dlI~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrVi-iVd-~----~~EIa~~~~ip~~~i---g~--~-- 272 (701)
...+|+++ .+|++++|+|||||||||||++|+|+ .|++|.-.. .+. . ...+++....+...+ .. .
T Consensus 12 ~~~~l~~i-~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~ 89 (208)
T 3b85_A 12 QKHYVDAI-DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDA 89 (208)
T ss_dssp HHHHHHHH-HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHH
T ss_pred HHHHHHhc-cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHH
Confidence 34567774 88999999999999999999999999 998886211 011 1 011222111010001 00 0
Q ss_pred -----------hhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-H--hcCCEEEEEEcChhHHHH
Q 005344 273 -----------RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI-A--QRGVQLVGTAHGMTIDNI 335 (701)
Q Consensus 273 -----------rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-~--e~GvtVIiTTHd~~l~~~ 335 (701)
..+.. ..||+||++||++++++|++||+||||++ -......+ . +.|.++| +||+.+.++.
T Consensus 90 ~~~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 90 LRDMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp HTTTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred HHHhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 00111 34999999999999999999999999999 33333222 2 3489999 9999887653
No 70
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.63 E-value=9e-16 Score=181.95 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=65.5
Q ss_pred CChhHHHHHHHHHHHccCC---CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE----
Q 005344 278 PNVNMQHSVMIEAVENHMP---ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI---- 343 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~~~P---dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl---- 343 (701)
+|+|+|||++||++|+++| ++|||||||++||+.+...+ .+.|.|||+++|+++++. .||+++.|
T Consensus 846 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL~p~g 924 (972)
T 2r6f_A 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEG 924 (972)
T ss_dssp CCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEECSSS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEEcCCC
Confidence 5789999999999999875 99999999999999998554 457999999999999874 79999999
Q ss_pred --eCCeEEEEecCcH
Q 005344 344 --LVGGIESVTLGDE 356 (701)
Q Consensus 344 --~~G~I~~V~lgd~ 356 (701)
..|++ +..+++
T Consensus 925 G~~~G~I--v~~g~~ 937 (972)
T 2r6f_A 925 GDRGGQI--VAVGTP 937 (972)
T ss_dssp TTSCCSE--EEEESH
T ss_pred CCCCCEE--EEecCH
Confidence 67888 445555
No 71
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.63 E-value=1.1e-15 Score=181.64 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=65.4
Q ss_pred CChhHHHHHHHHHHHccCC---CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE----
Q 005344 278 PNVNMQHSVMIEAVENHMP---ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI---- 343 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~~~P---dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl---- 343 (701)
+|+|++||++||++|+++| ++|||||||++||+.+...+ ++.|.|||+++|+++++ ..||+++.|
T Consensus 864 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~g 942 (993)
T 2ygr_A 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWIIDLGPEG 942 (993)
T ss_dssp SCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEESSS
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCc
Confidence 5789999999999999865 99999999999999988554 45799999999999997 479999999
Q ss_pred --eCCeEEEEecCcH
Q 005344 344 --LVGGIESVTLGDE 356 (701)
Q Consensus 344 --~~G~I~~V~lgd~ 356 (701)
..|++ +..++.
T Consensus 943 g~~~G~I--v~~G~~ 955 (993)
T 2ygr_A 943 GAGGGTV--VAQGTP 955 (993)
T ss_dssp TTSCSEE--EEEECH
T ss_pred CCCCCEE--EEecCH
Confidence 57888 445555
No 72
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.58 E-value=6.2e-16 Score=159.01 Aligned_cols=125 Identities=21% Similarity=0.279 Sum_probs=87.0
Q ss_pred ceeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC-CCcEEEEEcCCcccccCCCCCCCCCch--hhhccCCChhHH
Q 005344 208 EIICDL-VEGGGSILVIGPPGVGKTTLIREIARMLADD-HMKRVVIVDTSNEIGGDGDVPHSGIGR--ARRMQVPNVNMQ 283 (701)
Q Consensus 208 ~~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~-~GkrViiVd~~~EIa~~~~ip~~~ig~--~rr~~v~s~G~q 283 (701)
.+|+++ +.+|++++|+||||||||||+++|+|++.++ .|. |.+....-+. . ++..... ...+... ...
T Consensus 15 ~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~-I~~~g~~i~~--~---~~~~~~~v~q~~~gl~--~~~ 86 (261)
T 2eyu_A 15 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYH-IITIEDPIEY--V---FKHKKSIVNQREVGED--TKS 86 (261)
T ss_dssp THHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCE-EEEEESSCCS--C---CCCSSSEEEEEEBTTT--BSC
T ss_pred HHHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCE-EEEcCCccee--e---cCCcceeeeHHHhCCC--HHH
Confidence 456666 8899999999999999999999999999887 676 3333332221 1 1110100 0111111 123
Q ss_pred HHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH---HhcCCEEEEEEcChhHHHHhcCcEEEEe
Q 005344 284 HSVMIEAVENHMPETIIIDEIGTELEALAASTI---AQRGVQLVGTAHGMTIDNIVKNPSLQIL 344 (701)
Q Consensus 284 QRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l---~e~GvtVIiTTHd~~l~~~l~drvlvl~ 344 (701)
.+++|+++++++|++|++|||+ |..+...+ ++.|.++++|+|+.+. ..++++++.+.
T Consensus 87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~~~g~~vl~t~H~~~~-~~~~dri~~l~ 146 (261)
T 2eyu_A 87 FADALRAALREDPDVIFVGEMR---DLETVETALRAAETGHLVFGTLHTNTA-IDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHHHTTCEEEEEECCSSH-HHHHHHHHHTS
T ss_pred HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHHccCCEEEEEeCcchH-HHHHHHHhhhc
Confidence 3899999999999999999999 66665332 4679999999999884 56777776554
No 73
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.55 E-value=1.7e-15 Score=149.44 Aligned_cols=134 Identities=16% Similarity=0.077 Sum_probs=80.4
Q ss_pred eeccccccCCEEEEEcCCCCcHHHHHHHHH--hcCCCCCCcEEEEEcCCcccc-------cCCCCCCC----------CC
Q 005344 209 IICDLVEGGGSILVIGPPGVGKTTLIREIA--RMLADDHMKRVVIVDTSNEIG-------GDGDVPHS----------GI 269 (701)
Q Consensus 209 ~L~dlI~~GeiilIIGPNGSGKTTLLR~Ia--GlLsp~~GkrViiVd~~~EIa-------~~~~ip~~----------~i 269 (701)
++.+-+.+|++++|+||||||||||+++|+ +++.+..+ ++++....... ..+..++. ..
T Consensus 22 ~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 99 (251)
T 2ehv_A 22 LIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEP--GVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDG 99 (251)
T ss_dssp GTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCC--EEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-
T ss_pred HhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCe--EEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEc
Confidence 344447899999999999999999999999 66444433 34554432110 00100000 00
Q ss_pred -chh------h---hccCCChhHHHHHHHHHHHccCCCEEEEcCCCCccc-----HHHHH-------HHHhcCCEEEEEE
Q 005344 270 -GRA------R---RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELE-----ALAAS-------TIAQRGVQLVGTA 327 (701)
Q Consensus 270 -g~~------r---r~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD-----~~a~~-------~l~e~GvtVIiTT 327 (701)
... . .+...+...........+..++|++|++|||++++| ...+. .+++.|+|+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vt 179 (251)
T 2ehv_A 100 VSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTT 179 (251)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred cccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 000 0 000112233333444445568999999999999987 33332 2366799999999
Q ss_pred cChhHH---------HHhc-CcEEEEe
Q 005344 328 HGMTID---------NIVK-NPSLQIL 344 (701)
Q Consensus 328 Hd~~l~---------~~l~-drvlvl~ 344 (701)
|+...+ ..+| |.++++.
T Consensus 180 H~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 180 EAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp CCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCCCCCcccccccChhhEeeeEEEEEe
Confidence 999887 5777 9999886
No 74
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.51 E-value=3.7e-14 Score=158.95 Aligned_cols=212 Identities=18% Similarity=0.174 Sum_probs=130.4
Q ss_pred HhhccCCCCeEEEEEeCCC-ceEEecCCCceeeccccCCHHHHHHHHHHHhcccc----cCCCccc---cccchhhhhcc
Q 005344 116 LCMHRELGDLIEVVMDLGR-KPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSD----DNRSGID---RSLHRISAIRN 187 (701)
Q Consensus 116 l~~~~~~~~l~EI~L~~GR-~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs~----d~R~Gi~---rtghRIs~ir~ 187 (701)
|..+..+++++||+++... ++...+...........++.+++..++++++.++. +.++-+. +.++|+...-.
T Consensus 135 l~~ll~d~~v~dI~in~~~~~v~v~~~~~g~~~~~~~~~~~~l~~li~~i~~~~g~~i~~~~P~~~~~lp~g~Rv~~~~~ 214 (511)
T 2oap_1 135 IDPLMEDTNVEDISCDGYNIPIFIYHQKYGNVETNIVLDQEKLDRMVLRLTQRSGKHISIANPIVDATLPDGSRLQATFG 214 (511)
T ss_dssp GHHHHHCTTEEEEEECSTTCCCEEEETTTEEEEESCCCCHHHHHHHHHHHHHHTTCCCBTTBCEEEEEETTTEEEEEECS
T ss_pred hHHHhcCCCceEEEEECCCCEEEEEEccCcEEecCccCCHHHHHHHHHHHHHHcCCCccccCcceeeecCCCeEEEEEEC
Confidence 3444557899999999844 55555544433333445799999999999976552 2223322 46788874321
Q ss_pred ceEEE--EeEEEEECcccc---------c--ccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEE
Q 005344 188 RKMQV--IGLTCRVGRAVA---------G--SAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVI 251 (701)
Q Consensus 188 ~~IeI--~nLs~rygr~v~---------G--~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrVii 251 (701)
+.+.. ..+++|.-+... | ...+++++ +..|++++|+|||||||||||++|+|+++++.|. +.
T Consensus 215 ~~~~~~G~~i~IR~~~~~~~~~~~l~~~G~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~gi--it 292 (511)
T 2oap_1 215 TEVTPRGSSFTIRKFTIEPLTPIDLIEKGTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKV--VS 292 (511)
T ss_dssp SSSCTTCSEEEEEECCCCCCCHHHHHHTTSSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCE--EE
T ss_pred CCccCCCCEEEEEecCCCCCChhhHHhcCCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCE--EE
Confidence 11111 134555422110 1 12344454 7899999999999999999999999999887654 78
Q ss_pred EcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChh
Q 005344 252 VDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331 (701)
Q Consensus 252 Vd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~ 331 (701)
+++..|+..... .+ +....+..+...+....-++..+|.++||+|+++|.+.. ++...-.....|..++.|.|..+
T Consensus 293 ied~~E~~~~~~-~~--v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgEir~~-E~~~~l~a~~tGh~~~sT~Ha~~ 368 (511)
T 2oap_1 293 IEDTREIKLYHE-NW--IAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVGEVRGR-EAQTLFQAMSTGHASYSTLHAGD 368 (511)
T ss_dssp EESSCCCCCCCS-SE--EEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEESCCCST-HHHHHHHHHHTTCEEEEEEECSS
T ss_pred EcCcccccCCCC-Ce--EEEEeecccccCCcCHHHHHHHhhccCCCeEEeCCcCHH-HHHHHHHhhcCCCCcccccccCC
Confidence 887776643210 00 000001111111122234466788899999999999854 45554445677988888889765
Q ss_pred HH
Q 005344 332 ID 333 (701)
Q Consensus 332 l~ 333 (701)
..
T Consensus 369 ~~ 370 (511)
T 2oap_1 369 IN 370 (511)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 75
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.51 E-value=3.5e-15 Score=160.63 Aligned_cols=209 Identities=18% Similarity=0.208 Sum_probs=125.3
Q ss_pred CCeEEEEEeCCCceEEecCCCceee-ccccCCHHHHHHHHHHHhcccc------cCCCc--cc-cccc--hhhhhccceE
Q 005344 123 GDLIEVVMDLGRKPLARFPSGDWVI-SEQIVKHEDLKHAISKVGDFSD------DNRSG--ID-RSLH--RISAIRNRKM 190 (701)
Q Consensus 123 ~~l~EI~L~~GR~p~~r~~~~~~~l-~~~~vt~edl~~~i~~I~~fs~------d~R~G--i~-rtgh--RIs~ir~~~I 190 (701)
.++.+|+++.|.++..+..+....+ ....++.+++..++..+.+... +.... +. .+++ |++.+.....
T Consensus 25 ~~asDIhi~~~~~v~~r~~G~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~d~~~~~~~~~r~Rv~~~~~~~g 104 (372)
T 2ewv_A 25 LGASDIHLTAGAPPAVRIDGYIKFLKDFPRLTPEDTQKLAYSVMSEKHRQKLEENGQVDFSFGVRGVGRFRANVFYQRGS 104 (372)
T ss_dssp HTCSEEEECSSSSCEEEETTEEEECTTSCCSCCSTTHHHHHTTCCSTTTTHHHHSSEEEEEEECSSSCEEEEEEECCSSS
T ss_pred CCCeEEEEEcCCeEEEEECCEEEEeccCCCCCHHHHHHHHHHHhChhhhhhhhhccceEEEEEcCCCcEEEEEEEecCCC
Confidence 4678999999998888877665555 4456888899999988754321 11111 11 1122 3332222110
Q ss_pred EEEeEEEEECc-cc-----ccccceeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC-CCcEEEEEcCCcccccCC
Q 005344 191 QVIGLTCRVGR-AV-----AGSAEIICDL-VEGGGSILVIGPPGVGKTTLIREIARMLADD-HMKRVVIVDTSNEIGGDG 262 (701)
Q Consensus 191 eI~nLs~rygr-~v-----~G~~~~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~-~GkrViiVd~~~EIa~~~ 262 (701)
..+.+|.-. .. .|...+|+++ +.+|++++|+||||||||||+++|+|++.++ .|. |.++++..++....
T Consensus 105 --~~~viR~l~~~~~~l~~lg~~~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~-I~~~e~~~e~~~~~ 181 (372)
T 2ewv_A 105 --VAAALRSLPAEIPEFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYH-IITIEDPIEYVFKH 181 (372)
T ss_dssp --CBEEECCBCSSCCCHHHHCCCSSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCE-EEEEESSCCSCCCC
T ss_pred --cEEEEEeCCcccCCHhHcCCCHHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcE-EEEecccHhhhhcc
Confidence 012222110 00 1112344555 6789999999999999999999999999886 554 55666543321100
Q ss_pred ---CCCCCCCchhhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChhHHHHhcCc
Q 005344 263 ---DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMTIDNIVKNP 339 (701)
Q Consensus 263 ---~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~l~~~l~dr 339 (701)
.+++..++. ... ..+.+|+.++.++|++|++|||+...........++.|.+++.|+|+.+ +...+++
T Consensus 182 ~~~~v~Q~~~g~----~~~----~~~~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~-~~~~~~r 252 (372)
T 2ewv_A 182 KKSIVNQREVGE----DTK----SFADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNT-AIDTIHR 252 (372)
T ss_dssp SSSEEEEEEBTT----TBS----CSHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCS-HHHHHHH
T ss_pred CceEEEeeecCC----CHH----HHHHHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcch-HHHHHHH
Confidence 011110110 011 1257899999999999999999933222222233567999999999977 4556666
Q ss_pred EEEE
Q 005344 340 SLQI 343 (701)
Q Consensus 340 vlvl 343 (701)
++.+
T Consensus 253 l~~l 256 (372)
T 2ewv_A 253 IVDI 256 (372)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6544
No 76
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.50 E-value=1.1e-14 Score=162.80 Aligned_cols=132 Identities=13% Similarity=0.106 Sum_probs=97.6
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEc-CCcccccCCCCCCCCCc--------hh----hhccCCCh
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVD-TSNEIGGDGDVPHSGIG--------RA----RRMQVPNV 280 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd-~~~EIa~~~~ip~~~ig--------~~----rr~~v~s~ 280 (701)
+.+|++++|+|+||||||||++.+++...+. |.+++++. +...-.........++. .. ....-.++
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 7889999999999999999999999999875 65555543 32210000000000110 00 01112478
Q ss_pred hHHHHHHHHHHHccCCCEEEEcCCCCcccHH-----HHHH-------HHhcCCEEEEEEcCh----------hHHHHhcC
Q 005344 281 NMQHSVMIEAVENHMPETIIIDEIGTELEAL-----AAST-------IAQRGVQLVGTAHGM----------TIDNIVKN 338 (701)
Q Consensus 281 G~qQRV~IArAL~~~PdVIILDEPtsgLD~~-----a~~~-------l~e~GvtVIiTTHd~----------~l~~~l~d 338 (701)
|++|++++++++..+|++||+| |+++||.. .+.. +++.|+++|+++|+. ..+..+||
T Consensus 357 g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D 435 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITD 435 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCS
T ss_pred HHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeee
Confidence 9999999999999999999999 99999987 5533 366799999999998 77788999
Q ss_pred cEEEEeCCe
Q 005344 339 PSLQILVGG 347 (701)
Q Consensus 339 rvlvl~~G~ 347 (701)
.++.+..|+
T Consensus 436 ~vi~L~~ge 444 (525)
T 1tf7_A 436 TIILLQYVE 444 (525)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999998875
No 77
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.48 E-value=7.6e-14 Score=143.48 Aligned_cols=139 Identities=19% Similarity=0.190 Sum_probs=89.4
Q ss_pred eeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---ccc----c-CCCCCCCC---C--c--
Q 005344 209 IICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---EIG----G-DGDVPHSG---I--G-- 270 (701)
Q Consensus 209 ~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---EIa----~-~~~ip~~~---i--g-- 270 (701)
.|+++ +.+|++++|+||||||||||++.|++.+.+..|.+|.++.... ++. . ....+... + +
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~ 103 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREII 103 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCC
Confidence 45555 8899999999999999999999999999888786677775431 110 0 01111000 0 0
Q ss_pred -h------------hhhc---cC---CChhH-HHHHHHHHHHccCCCEEEEcCCCC---c---ccH-HHHH-------HH
Q 005344 271 -R------------ARRM---QV---PNVNM-QHSVMIEAVENHMPETIIIDEIGT---E---LEA-LAAS-------TI 316 (701)
Q Consensus 271 -~------------~rr~---~v---~s~G~-qQRV~IArAL~~~PdVIILDEPts---g---LD~-~a~~-------~l 316 (701)
. ...+ .. .+.++ ++++. ++++.++|++||+|||+. + +|. .... .+
T Consensus 104 ~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~l 182 (296)
T 1cr0_A 104 ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGF 182 (296)
T ss_dssp HHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 0 0001 01 23343 56666 888999999999999998 4 344 3322 22
Q ss_pred -HhcCCEEEEEEcCh--h--------------------HHHHhcCcEEEEeCCeE
Q 005344 317 -AQRGVQLVGTAHGM--T--------------------IDNIVKNPSLQILVGGI 348 (701)
Q Consensus 317 -~e~GvtVIiTTHd~--~--------------------l~~~l~drvlvl~~G~I 348 (701)
++.|++||+++|+. + .+..+||.++++..|+.
T Consensus 183 a~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 183 AKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 34599999999995 4 67789999999988864
No 78
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.46 E-value=8.2e-14 Score=165.79 Aligned_cols=134 Identities=21% Similarity=0.203 Sum_probs=90.9
Q ss_pred cceeccc---cccCCEEEEEcCCCCcHHHHHHHH--------HhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhc
Q 005344 207 AEIICDL---VEGGGSILVIGPPGVGKTTLIREI--------ARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRM 275 (701)
Q Consensus 207 ~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~I--------aGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~ 275 (701)
..+++++ +.+|++++|+||||||||||||.| +|..-|..+..+.+++. + +...+... ...
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~---i-----~~~ig~~d-~l~ 719 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDC---I-----LARVGAGD-SQL 719 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSE---E-----EEECC-------
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHH---H-----HHhcCchh-hHH
Confidence 3466777 667899999999999999999999 56555543322222221 1 00111110 011
Q ss_pred cCCChhHHHHHHHHHHH--ccCCCEEEEcCCCCcccHHHHHHH--------Hh-cCCEEEEEEcChhHHHHhcCcEEEEe
Q 005344 276 QVPNVNMQHSVMIEAVE--NHMPETIIIDEIGTELEALAASTI--------AQ-RGVQLVGTAHGMTIDNIVKNPSLQIL 344 (701)
Q Consensus 276 ~v~s~G~qQRV~IArAL--~~~PdVIILDEPtsgLD~~a~~~l--------~e-~GvtVIiTTHd~~l~~~l~drvlvl~ 344 (701)
.-.+.++.++..+++++ +++|++||+||||+|+|+.....+ .+ .|.++|++||+.++. .+++++..+.
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ 798 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVN 798 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeE
Confidence 22455666777777777 899999999999999999765332 33 499999999998776 5899988888
Q ss_pred CCeEEE
Q 005344 345 VGGIES 350 (701)
Q Consensus 345 ~G~I~~ 350 (701)
+|.+..
T Consensus 799 ng~v~~ 804 (934)
T 3thx_A 799 NLHVTA 804 (934)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 998843
No 79
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.46 E-value=7.7e-14 Score=135.96 Aligned_cols=136 Identities=19% Similarity=0.206 Sum_probs=78.2
Q ss_pred cccccCCEEEEEcCCCCcHHHHHHHHHhcCCCCC-----CcEEEEEcCCccccc--CCCCC-CCCCchh---hhc---cC
Q 005344 212 DLVEGGGSILVIGPPGVGKTTLIREIARMLADDH-----MKRVVIVDTSNEIGG--DGDVP-HSGIGRA---RRM---QV 277 (701)
Q Consensus 212 dlI~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~-----GkrViiVd~~~EIa~--~~~ip-~~~ig~~---rr~---~v 277 (701)
+-+.+|++++|+||||||||||+++|+|.+.+.. +..++++++...... ...+. ..++... ..+ ..
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 99 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEec
Confidence 3378999999999999999999999999765521 234677776532110 00000 0011100 011 11
Q ss_pred CChhHH-HHHHHHHHH-------ccCCCEEEEcCCCCcccHH-------H---------HHH---H-HhcCCEEEEEEc-
Q 005344 278 PNVNMQ-HSVMIEAVE-------NHMPETIIIDEIGTELEAL-------A---------AST---I-AQRGVQLVGTAH- 328 (701)
Q Consensus 278 ~s~G~q-QRV~IArAL-------~~~PdVIILDEPtsgLD~~-------a---------~~~---l-~e~GvtVIiTTH- 328 (701)
.+...+ ..+..+..+ .++|++|++|||++.+|+. . ... + ++.|++||+++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 122222 212222222 4599999999999998872 1 111 1 456999999999
Q ss_pred ---ChhHHHHhcCcEEEEeCCe
Q 005344 329 ---GMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 329 ---d~~l~~~l~drvlvl~~G~ 347 (701)
+...+..++|.++.+..|+
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp C---------CCSEEEEEEECT
T ss_pred ccCcchhhHhhceEEEEEEecC
Confidence 5556888999998887653
No 80
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.45 E-value=9.7e-14 Score=166.65 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=97.6
Q ss_pred cceEEEEe-----EEEEECcccccccceeccc---ccc-------CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEE-
Q 005344 187 NRKMQVIG-----LTCRVGRAVAGSAEIICDL---VEG-------GGSILVIGPPGVGKTTLIREIARMLADDHMKRVV- 250 (701)
Q Consensus 187 ~~~IeI~n-----Ls~rygr~v~G~~~~L~dl---I~~-------GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrVi- 250 (701)
..++++.+ |++.|. +...+++++ +.+ |++++|+||||||||||||.| |++.+.. +++
T Consensus 748 ~~~l~i~~~rHP~l~~~~~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~a--qiG~ 820 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFF----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMA--QMGC 820 (1022)
T ss_dssp CCCEEEEEECCCC----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHH--TTTC
T ss_pred CceEEEEeccccEEEEEec----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHh--heeE
Confidence 34689999 998883 123577887 444 899999999999999999999 8875421 112
Q ss_pred EEcCCcc-cccCCCCCCCCCchhhhc--cC--CChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHH--------HHH
Q 005344 251 IVDTSNE-IGGDGDVPHSGIGRARRM--QV--PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAAS--------TIA 317 (701)
Q Consensus 251 iVd~~~E-Ia~~~~ip~~~ig~~rr~--~v--~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~--------~l~ 317 (701)
+|++... +.....+ ...+|..... .. .+.+|+ +++++++++.+|.+||+||||+|+|+.... .+.
T Consensus 821 ~Vpq~~~~l~v~d~I-~~rig~~d~~~~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~ 898 (1022)
T 2o8b_B 821 YVPAEVCRLTPIDRV-FTRLGASDRIMSGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELA 898 (1022)
T ss_dssp CEESSEEEECCCSBE-EEECC---------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred EeccCcCCCCHHHHH-HHHcCCHHHHhhchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHH
Confidence 4444321 1100000 0011111111 01 122444 589999999999999999999999987631 234
Q ss_pred hc-CCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 318 QR-GVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 318 e~-GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
+. |.++|++||+.+++..+++++.++ +|++.
T Consensus 899 ~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 899 ETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp HTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred hcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 44 999999999999999999988776 47763
No 81
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.44 E-value=5.9e-13 Score=139.70 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=59.2
Q ss_pred CChhHHHHHHHHHHHc----cCCCEEEEcCCCCcccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcE--EEEeC
Q 005344 278 PNVNMQHSVMIEAVEN----HMPETIIIDEIGTELEALAASTI----A--QRGVQLVGTAHGMTIDNIVKNPS--LQILV 345 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~----~~PdVIILDEPtsgLD~~a~~~l----~--e~GvtVIiTTHd~~l~~~l~drv--lvl~~ 345 (701)
.|.|+||+++||++++ ..|++||+|||+++||+.....+ . ..|.++|++||+... ..+||++ +.+.+
T Consensus 220 lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~-~~~~d~~~~v~~~~ 298 (322)
T 1e69_A 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIV-MEAADLLHGVTMVN 298 (322)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTG-GGGCSEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHH-HhhCceEEEEEEeC
Confidence 5779999999999997 57899999999999999988554 1 248899999999654 4679976 77777
Q ss_pred CeEEEE
Q 005344 346 GGIESV 351 (701)
Q Consensus 346 G~I~~V 351 (701)
|....+
T Consensus 299 g~s~~~ 304 (322)
T 1e69_A 299 GVSAIV 304 (322)
T ss_dssp SCEEEE
T ss_pred CEEEEE
Confidence 775433
No 82
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.43 E-value=9.4e-14 Score=145.82 Aligned_cols=131 Identities=18% Similarity=0.210 Sum_probs=91.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc--cc------------cCCCCCCC-C-Cc-------
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE--IG------------GDGDVPHS-G-IG------- 270 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E--Ia------------~~~~ip~~-~-ig------- 270 (701)
+.+|++++|+||||||||||++.|+|++.+++|+ | .+.+.+- .+ ..+.+++. . ..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~-V-~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e 174 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK-V-LMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSK 174 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCC-E-EEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCe-E-EEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHH
Confidence 6789999999999999999999999999988776 3 3333211 00 01111110 0 00
Q ss_pred -----hhh--------hccCCC--------hhHHHHHHHHHHHccCCC--EEEEcCCCCcccHHHH-HHHH-hcCCEEEE
Q 005344 271 -----RAR--------RMQVPN--------VNMQHSVMIEAVENHMPE--TIIIDEIGTELEALAA-STIA-QRGVQLVG 325 (701)
Q Consensus 271 -----~~r--------r~~v~s--------~G~qQRV~IArAL~~~Pd--VIILDEPtsgLD~~a~-~~l~-e~GvtVIi 325 (701)
... ..+... .- +|+++|++++.++|+ +|++| ||+++|+... ..+. ..|+++|+
T Consensus 175 ~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS-kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~ii 252 (302)
T 3b9q_A 175 AVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI-ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLI 252 (302)
T ss_dssp HHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH-HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEE
T ss_pred HHHHHHHcCCcchHHhcCCCCcchhHHHHHHH-HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEE
Confidence 000 000000 11 789999999999999 99999 9999999876 3444 46999999
Q ss_pred EEc---------ChhHHHHhcCcEEEEeCCeE
Q 005344 326 TAH---------GMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 326 TTH---------d~~l~~~l~drvlvl~~G~I 348 (701)
+|| ..+++..++.|+..+..|..
T Consensus 253 iThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 253 LTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 999 45677778889988888853
No 83
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.43 E-value=1.1e-13 Score=134.35 Aligned_cols=132 Identities=15% Similarity=0.049 Sum_probs=86.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc---cc----cCCCCCCC----CCchh----------
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE---IG----GDGDVPHS----GIGRA---------- 272 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E---Ia----~~~~ip~~----~ig~~---------- 272 (701)
+.+|++++|+||||||||||++.|++.+.+..|. |.++..... +. ..+..++. .+...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDP-CIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCC-EEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCe-EEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 6789999999999999999999999988766554 566654321 00 00100000 00000
Q ss_pred hhccCCChhHHHHHHHHHHHccCCC--EEEEcCCCCcc--cHHHHHH-------H-HhcCCEEEEEEcCh--------hH
Q 005344 273 RRMQVPNVNMQHSVMIEAVENHMPE--TIIIDEIGTEL--EALAAST-------I-AQRGVQLVGTAHGM--------TI 332 (701)
Q Consensus 273 rr~~v~s~G~qQRV~IArAL~~~Pd--VIILDEPtsgL--D~~a~~~-------l-~e~GvtVIiTTHd~--------~l 332 (701)
....-.+.++.++.+.+.+..++|+ +||+|||++.+ |+..... + ++.|+++|+++|+. ..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~ 178 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFG 178 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------C
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccc
Confidence 0001125566677777777778999 99999999776 8644322 2 45699999999998 45
Q ss_pred HHHhcCcEEEEeCC
Q 005344 333 DNIVKNPSLQILVG 346 (701)
Q Consensus 333 ~~~l~drvlvl~~G 346 (701)
+..+||.++.+...
T Consensus 179 ~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 179 VEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHCSEEEEEEEE
T ss_pred hheeeeEEEEEEEE
Confidence 78889999988754
No 84
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.41 E-value=1.8e-13 Score=146.60 Aligned_cols=222 Identities=16% Similarity=0.155 Sum_probs=130.0
Q ss_pred HhhccCCCCeEEEEEeCCCceEEecCCCceeeccccCCHHHHHHHHHHHhccccc----CCCccc---cccchhhhhccc
Q 005344 116 LCMHRELGDLIEVVMDLGRKPLARFPSGDWVISEQIVKHEDLKHAISKVGDFSDD----NRSGID---RSLHRISAIRNR 188 (701)
Q Consensus 116 l~~~~~~~~l~EI~L~~GR~p~~r~~~~~~~l~~~~vt~edl~~~i~~I~~fs~d----~R~Gi~---rtghRIs~ir~~ 188 (701)
|..+..++.+.||.++.+..+.....++........+|..++..++..++.+... ..+-+. ..+.||..+..+
T Consensus 29 l~~~l~d~~v~dI~in~~~~v~v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~Ri~~vl~p 108 (361)
T 2gza_A 29 LRPWLDDPQITEVCVNRPGEVFCERASAWEYYAVPNLDYEHLISLGTATARFVDQDISDSRPVLSAILPMGERIQIVRPP 108 (361)
T ss_dssp GHHHHSCTTEEEEEESSTTEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHHTTCCCSSSSCEEEEECTTSCEEEEECTT
T ss_pred HHHHhcCCCCEEEEEcCCCEEEEEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCCccCCCCCeEEEEcCCCcEEEEEecC
Confidence 3445567899999999843343333333333332459999999999998765421 111111 234676544311
Q ss_pred -------eEEEE-------------------eEEEE---ECccccccccee---------ccc---cccCCEEEEEcCCC
Q 005344 189 -------KMQVI-------------------GLTCR---VGRAVAGSAEII---------CDL---VEGGGSILVIGPPG 227 (701)
Q Consensus 189 -------~IeI~-------------------nLs~r---ygr~v~G~~~~L---------~dl---I~~GeiilIIGPNG 227 (701)
.+.+. +++++ |.. ....+| +++ +.+|++++|+||||
T Consensus 109 ~~~~~~~~~~ir~~~~~~itl~~l~~~g~f~~v~f~~~~Y~~---~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sG 185 (361)
T 2gza_A 109 ACEHGTISVTIRKPSFTRRTLEDYAQQGFFKHVRPMSKSLTP---FEQELLALKEAGDYMSFLRRAVQLERVIVVAGETG 185 (361)
T ss_dssp TBCTTCCEEEEECCCCCCCCHHHHHHTTTTSCCCCSCSCCCH---HHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSS
T ss_pred ccCCCCeEEEEEecCCCCCCHHHHHhcCCcCccccccccccc---hhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCC
Confidence 11111 11111 110 001222 555 88999999999999
Q ss_pred CcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhh-hccCC--ChhHHHHHHHHHHHccCCCEEEEcCC
Q 005344 228 VGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRAR-RMQVP--NVNMQHSVMIEAVENHMPETIIIDEI 304 (701)
Q Consensus 228 SGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~r-r~~v~--s~G~qQRV~IArAL~~~PdVIILDEP 304 (701)
||||||+++|+|++.++.|. +.+++..++.... .. ..++... .-... ..+...+..|+.++.+.|+++++||+
T Consensus 186 sGKSTll~~l~~~~~~~~g~--I~ie~~~e~~~~~-~~-~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~ 261 (361)
T 2gza_A 186 SGKTTLMKALMQEIPFDQRL--ITIEDVPELFLPD-HP-NHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAEL 261 (361)
T ss_dssp SCHHHHHHHHHTTSCTTSCE--EEEESSSCCCCTT-CS-SEEEEECC----------CCHHHHHHHHTTSCCSEEEESCC
T ss_pred CCHHHHHHHHHhcCCCCceE--EEECCccccCccc-cC-CEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCc
Confidence 99999999999999998776 7777655543110 00 0111100 00000 13445678888999999999999999
Q ss_pred CCcccHHHHHHHHhcCC-EEEEEEcChhHHHHhcCcEEEEeCC
Q 005344 305 GTELEALAASTIAQRGV-QLVGTAHGMTIDNIVKNPSLQILVG 346 (701)
Q Consensus 305 tsgLD~~a~~~l~e~Gv-tVIiTTHd~~l~~~l~drvlvl~~G 346 (701)
... ++.........|. +++.++|+.+ +...++++..+..+
T Consensus 262 r~~-~~~~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 262 RGG-EAYDFINVAASGHGGSITSCHAGS-CELTFERLALMVLQ 302 (361)
T ss_dssp CST-HHHHHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTT
T ss_pred hHH-HHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhc
Confidence 853 3322222234454 6899999976 55667777666554
No 85
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.40 E-value=7.8e-15 Score=160.58 Aligned_cols=123 Identities=12% Similarity=0.128 Sum_probs=80.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCCCcE------E---EEEcCCcccccC--CCCC-----CC---------CCchh
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDHMKR------V---VIVDTSNEIGGD--GDVP-----HS---------GIGRA 272 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~Gkr------V---iiVd~~~EIa~~--~~ip-----~~---------~ig~~ 272 (701)
.+++|+||||||||||+|+|+|++.++.|.- + .++.+....... .+.+ .. ++...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 3999999999999999999999999887741 0 122221110000 0000 00 00000
Q ss_pred hhccCCChh--HHHHHHHHHHHcc----------CCCEEEEcCCCCcccHHHHHHH-------H-----hcC----CEEE
Q 005344 273 RRMQVPNVN--MQHSVMIEAVENH----------MPETIIIDEIGTELEALAASTI-------A-----QRG----VQLV 324 (701)
Q Consensus 273 rr~~v~s~G--~qQRV~IArAL~~----------~PdVIILDEPtsgLD~~a~~~l-------~-----e~G----vtVI 324 (701)
......++| ++|++.|++++.+ +|+++++||||++||+..+..+ . +.| .+++
T Consensus 150 ~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iil 229 (413)
T 1tq4_A 150 DFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFL 229 (413)
T ss_dssp SEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEE
T ss_pred CCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 011114556 9999999999999 9999999999999999876433 1 223 5677
Q ss_pred EEEcChhH--HHHhcCcE
Q 005344 325 GTAHGMTI--DNIVKNPS 340 (701)
Q Consensus 325 iTTHd~~l--~~~l~drv 340 (701)
+++|..+. ++.++|.+
T Consensus 230 iSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 230 LSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp CCTTCTTSTTHHHHHHHH
T ss_pred EecCcCCccCHHHHHHHH
Confidence 88998775 66666555
No 86
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.39 E-value=3.2e-15 Score=146.48 Aligned_cols=139 Identities=14% Similarity=0.026 Sum_probs=74.7
Q ss_pred ccceeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC------------CC--cEEEEEcCCcccc-c---CCCC--
Q 005344 206 SAEIICDL-VEGGGSILVIGPPGVGKTTLIREIARMLADD------------HM--KRVVIVDTSNEIG-G---DGDV-- 264 (701)
Q Consensus 206 ~~~~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~------------~G--krViiVd~~~EIa-~---~~~i-- 264 (701)
...++++. +.+|++++|+||||||||||+|+|+|++... .+ ..+.++.+....- . ...+
T Consensus 8 ~~~~~~~~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~ 87 (207)
T 1znw_A 8 TKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLE 87 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred CCcCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCcee
Confidence 34566666 8999999999999999999999999998511 11 0112222211000 0 0000
Q ss_pred --------CCCCCchh---hhc-c-------CCChhHH-HHHHHHH---HHccCCCEEEEcCCCCcc----cHHHHHHH-
Q 005344 265 --------PHSGIGRA---RRM-Q-------VPNVNMQ-HSVMIEA---VENHMPETIIIDEIGTEL----EALAASTI- 316 (701)
Q Consensus 265 --------p~~~ig~~---rr~-~-------v~s~G~q-QRV~IAr---AL~~~PdVIILDEPtsgL----D~~a~~~l- 316 (701)
...+.... .+. . +...|.. .+-.... +++++|+++++|||++++ |+..+..+
T Consensus 88 ~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~ 167 (207)
T 1znw_A 88 WAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLD 167 (207)
T ss_dssp EEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHH
T ss_pred ehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 00000000 000 0 1111221 1111112 566789999999999887 66555333
Q ss_pred ------H-hcCCEEEEEEcChhHHHHhcCcEEEEe
Q 005344 317 ------A-QRGVQLVGTAHGMTIDNIVKNPSLQIL 344 (701)
Q Consensus 317 ------~-e~GvtVIiTTHd~~l~~~l~drvlvl~ 344 (701)
. +.|.++|++||+++++..+||+++++.
T Consensus 168 ~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 168 TARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 3 458999999999999999999988763
No 87
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.37 E-value=7.2e-13 Score=142.63 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=90.9
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-cc------------ccCCCCCCC-C-Cc------h-
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-EI------------GGDGDVPHS-G-IG------R- 271 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-EI------------a~~~~ip~~-~-ig------~- 271 (701)
+.+|++++|+||||||||||++.|+|++.+++|+ |.+..... .. ...+.+++. . .. .
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~-V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~ 232 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK-VLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 232 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCC-EEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCE-EEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHH
Confidence 6789999999999999999999999999988776 33333211 00 001111110 0 00 0
Q ss_pred -----h--------hhccCCC--------hhHHHHHHHHHHHccCCC--EEEEcCCCCcccHHHHH-HHH-hcCCEEEEE
Q 005344 272 -----A--------RRMQVPN--------VNMQHSVMIEAVENHMPE--TIIIDEIGTELEALAAS-TIA-QRGVQLVGT 326 (701)
Q Consensus 272 -----~--------rr~~v~s--------~G~qQRV~IArAL~~~Pd--VIILDEPtsgLD~~a~~-~l~-e~GvtVIiT 326 (701)
. +..+... +- +|+++|++++.++|+ +|++| ||+++|+.... .+. ..|+++|++
T Consensus 233 l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS-kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~t~iii 310 (359)
T 2og2_A 233 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELI-ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLIL 310 (359)
T ss_dssp HHHHHHTTCSEEEEECCCCSSCCHHHHHHHH-HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHhCCCHHHHHHhcCCChhhhhHHHHHH-HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCCeEEEE
Confidence 0 0000000 11 789999999999999 99999 99999998763 444 459999999
Q ss_pred Ec---------ChhHHHHhcCcEEEEeCCe
Q 005344 327 AH---------GMTIDNIVKNPSLQILVGG 347 (701)
Q Consensus 327 TH---------d~~l~~~l~drvlvl~~G~ 347 (701)
|| .++.+..++.|+..+..|.
T Consensus 311 ThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 311 TKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp ESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred ecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 99 3567777888888888885
No 88
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.36 E-value=8.9e-13 Score=156.67 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=78.3
Q ss_pred cceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC--------CCCCcEEEEEcCCcccccCCCCCCCCCchh--h
Q 005344 207 AEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLA--------DDHMKRVVIVDTSNEIGGDGDVPHSGIGRA--R 273 (701)
Q Consensus 207 ~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs--------p~~GkrViiVd~~~EIa~~~~ip~~~ig~~--r 273 (701)
..+++++ +.+|++++|+||||||||||||+|+++.- |.....+.+++ .+ +...+.... .
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d---~i-----~~~ig~~d~l~~ 731 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVD---GI-----FTRMGAADNIYK 731 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCS---EE-----EEEC--------
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHH---HH-----HHhCChHHHHHH
Confidence 4567777 67899999999999999999999986431 11111111111 11 011111110 1
Q ss_pred hccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH--------Hh-cCCEEEEEEcChhHHH
Q 005344 274 RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI--------AQ-RGVQLVGTAHGMTIDN 334 (701)
Q Consensus 274 r~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l--------~e-~GvtVIiTTHd~~l~~ 334 (701)
.....+.||++++.++++ +.+|++||+||||+|+|+.....+ .+ .|.++|++||+.+++.
T Consensus 732 ~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 732 GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp --CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence 111224588888888877 899999999999999999765332 23 5999999999987764
No 89
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.35 E-value=8.1e-13 Score=154.52 Aligned_cols=123 Identities=15% Similarity=0.185 Sum_probs=84.5
Q ss_pred cceeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcCC-CCCCcEEEEEcCC-cccccCCC-CCCCCCchhhhccCCChhH
Q 005344 207 AEIICDL-VEGGGSILVIGPPGVGKTTLIREIARMLA-DDHMKRVVIVDTS-NEIGGDGD-VPHSGIGRARRMQVPNVNM 282 (701)
Q Consensus 207 ~~~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlLs-p~~GkrViiVd~~-~EIa~~~~-ip~~~ig~~rr~~v~s~G~ 282 (701)
..+++++ +. |++++|+||||||||||||+|+|+.. +..|. +++.. ..++.... ++..+.... ...-.+.++
T Consensus 566 ~~vl~disl~-g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~---~vpa~~~~i~~v~~i~~~~~~~d~-l~~g~S~~~ 640 (765)
T 1ewq_A 566 EFVPNDLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGS---FVPAEEAHLPLFDGIYTRIGASDD-LAGGKSTFM 640 (765)
T ss_dssp CCCCEEEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTC---CBSSSEEEECCCSEEEEECCC-------CCSHHH
T ss_pred ceEeeeccCC-CcEEEEECCCCCChHHHHHHHHhhhhhcccCc---eeehhccceeeHHHhhccCCHHHH-HHhcccHHH
Confidence 4567788 77 99999999999999999999999863 45564 12211 11111100 011111110 111235688
Q ss_pred HHHHHHHHHH--ccCCCEEEEcCC---CCcccHHHHH-----HHHhcCCEEEEEEcChhHHH
Q 005344 283 QHSVMIEAVE--NHMPETIIIDEI---GTELEALAAS-----TIAQRGVQLVGTAHGMTIDN 334 (701)
Q Consensus 283 qQRV~IArAL--~~~PdVIILDEP---tsgLD~~a~~-----~l~e~GvtVIiTTHd~~l~~ 334 (701)
++++.+++++ +.+|++||+||| |+++|..+.. .+.+.|.++|++||+.++..
T Consensus 641 ~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 641 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 9999999999 899999999999 8899987642 23557999999999988764
No 90
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.33 E-value=2.3e-12 Score=136.30 Aligned_cols=66 Identities=11% Similarity=0.063 Sum_probs=55.3
Q ss_pred CChhHHH------HHHHHHHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEe
Q 005344 278 PNVNMQH------SVMIEAVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQIL 344 (701)
Q Consensus 278 ~s~G~qQ------RV~IArAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~ 344 (701)
.|+|+|| ++++|++++.+|++||+|||+++||+..+..+ ...|.++|++||+..+ ..+||+++.+.
T Consensus 249 lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~~d~~~~l~ 327 (339)
T 3qkt_A 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDAADHVIRIS 327 (339)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGGCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHhCCEEEEEE
Confidence 5789999 56777888889999999999999999887544 3568899999999765 56899988775
No 91
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.28 E-value=7.3e-12 Score=121.32 Aligned_cols=129 Identities=17% Similarity=0.100 Sum_probs=83.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccC---CCCCCCCCch---hhhccC--CChh--HH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGD---GDVPHSGIGR---ARRMQV--PNVN--MQ 283 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~---~~ip~~~ig~---~rr~~v--~s~G--~q 283 (701)
+.+|++++|+||||||||||++.|++ ..|..+++++........ ......++.. ...+.+ .+.+ ++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~----~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL----LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH----HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH----HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 77899999999999999999999999 235678888765411100 0000011100 011111 1223 24
Q ss_pred HHHHHHHHHccC-CCEEEEcCCCCcccHH--------HH-------HHH-HhcCCEEEEEEcChh-------------HH
Q 005344 284 HSVMIEAVENHM-PETIIIDEIGTELEAL--------AA-------STI-AQRGVQLVGTAHGMT-------------ID 333 (701)
Q Consensus 284 QRV~IArAL~~~-PdVIILDEPtsgLD~~--------a~-------~~l-~e~GvtVIiTTHd~~-------------l~ 333 (701)
+.+..++++... |++||+|||++.+|.. .. ..+ ++.|+++|+++|... .+
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~ 172 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTL 172 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHH
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcce
Confidence 566667777775 9999999999998752 11 122 355999999999765 45
Q ss_pred HHhcCcEEEEeCC
Q 005344 334 NIVKNPSLQILVG 346 (701)
Q Consensus 334 ~~l~drvlvl~~G 346 (701)
..+||.++.+...
T Consensus 173 ~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 173 GYRCKDILRLDKL 185 (220)
T ss_dssp HHTSSEEEEEEEC
T ss_pred eecCcEEEEEEEe
Confidence 6788888877644
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.28 E-value=4.1e-12 Score=141.98 Aligned_cols=138 Identities=17% Similarity=0.136 Sum_probs=91.4
Q ss_pred cceeccc----cccCCEEEEEcCCCCcHHHHHHH--HHhcCCCCCCcEEEEEcCCccc-------ccCCCCCCC-----C
Q 005344 207 AEIICDL----VEGGGSILVIGPPGVGKTTLIRE--IARMLADDHMKRVVIVDTSNEI-------GGDGDVPHS-----G 268 (701)
Q Consensus 207 ~~~L~dl----I~~GeiilIIGPNGSGKTTLLR~--IaGlLsp~~GkrViiVd~~~EI-------a~~~~ip~~-----~ 268 (701)
..+|+++ +.+|++++|+||||||||||+++ ++|+++|+.|. +++++.... ...+..++. .
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~--i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~ 102 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPG--VFVTFEETPQDIIKNARSFGWDLAKLVDEGK 102 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCE--EEEESSSCHHHHHHHHGGGTCCHHHHHHTTS
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCE--EEEEEeCCHHHHHHHHHHcCCChHHhhccCc
Confidence 4677777 67999999999999999999999 78999877775 677654310 001111110 0
Q ss_pred Cch------hhhccC-CChhHH-HHHHHHHHHc-cCCCEEEEcCCCC-----cccHHHHHHH-------HhcCCEEEEEE
Q 005344 269 IGR------ARRMQV-PNVNMQ-HSVMIEAVEN-HMPETIIIDEIGT-----ELEALAASTI-------AQRGVQLVGTA 327 (701)
Q Consensus 269 ig~------~rr~~v-~s~G~q-QRV~IArAL~-~~PdVIILDEPts-----gLD~~a~~~l-------~e~GvtVIiTT 327 (701)
+.. .....+ ...+.. ....+...+. .+|++|++|||++ ++|+..+..+ ++.|+|+|+++
T Consensus 103 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~it 182 (525)
T 1tf7_A 103 LFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTT 182 (525)
T ss_dssp EEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 000 000011 122222 2233444453 7999999999987 3587776433 56799999999
Q ss_pred cChhH---------HHHhcCcEEEEeCC
Q 005344 328 HGMTI---------DNIVKNPSLQILVG 346 (701)
Q Consensus 328 Hd~~l---------~~~l~drvlvl~~G 346 (701)
|+.+. +..+||+++++.+|
T Consensus 183 H~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 183 ERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp ECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred cCCCCccccccccceeeeeeEEEEEEEE
Confidence 99987 46779999999984
No 93
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.25 E-value=1.3e-14 Score=153.01 Aligned_cols=139 Identities=12% Similarity=0.107 Sum_probs=95.7
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCC
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH 266 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~ 266 (701)
|++++|+++|+ ..+|+++ |.+|++++|+||||||||||+++|+|++ .|+-++++.+...+-. +.+..
T Consensus 102 i~~~~vs~~y~------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~-~ti~~ 171 (305)
T 2v9p_A 102 FNYQNIELITF------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWL-ASLAD 171 (305)
T ss_dssp HHHTTCCHHHH------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGG-GGGTT
T ss_pred EEEEEEEEEcC------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCcccccc-ccHHH
Confidence 45678888875 2578888 8999999999999999999999999998 5774444444322210 00000
Q ss_pred CCC--c--------h-hhh-------ccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEc
Q 005344 267 SGI--G--------R-ARR-------MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAH 328 (701)
Q Consensus 267 ~~i--g--------~-~rr-------~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTH 328 (701)
..+ + . ... -.-.|+|+||| |++++.+|++|| |++||+.....+.. .+|
T Consensus 172 ~ni~~~~~~~~~~~~~i~~~L~~gldg~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-------ltH 237 (305)
T 2v9p_A 172 TRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-------LHS 237 (305)
T ss_dssp CSCEEEEEECHHHHHHHHHTTTGGGGTCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-------GTT
T ss_pred HhhccCccccHHHHHHHHHHhHccCCccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-------HhC
Confidence 000 0 0 001 11247799999 999999999999 99999988766642 289
Q ss_pred ChhHHHHhcCcEEEEeCCeEEEEecCcH
Q 005344 329 GMTIDNIVKNPSLQILVGGIESVTLGDE 356 (701)
Q Consensus 329 d~~l~~~l~drvlvl~~G~I~~V~lgd~ 356 (701)
....+ .++|++ ++.+|++ +..+..
T Consensus 238 ~~~~~-~~aD~i-vl~~G~i--v~~g~~ 261 (305)
T 2v9p_A 238 RVQTF-RFEQPC-TDESGEQ--PFNITD 261 (305)
T ss_dssp TEEEE-ECCCCC-CCC---C--CCCCCH
T ss_pred CHHHH-HhCCEE-EEeCCEE--EEeCCH
Confidence 88775 579999 9999998 555555
No 94
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.20 E-value=3.2e-11 Score=118.55 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=65.9
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHh--cCCCC---CCcEEEEEcCCccccc--C-CCCCCCCCchh---hhc---cCCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIAR--MLADD---HMKRVVIVDTSNEIGG--D-GDVPHSGIGRA---RRM---QVPN 279 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaG--lLsp~---~GkrViiVd~~~EIa~--~-~~ip~~~ig~~---rr~---~v~s 279 (701)
+.+|++++|+||||||||||++.|++ ++.+. .+..+++++....... . ......++... ..+ ...+
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 78899999999999999999999999 45442 2356788876542100 0 00000011100 011 1112
Q ss_pred hhHHHHH---HHHHHHccCCCEEEEcCCCCcccHH-------H-----HHH----H----HhcCCEEEEEEcChhHHH
Q 005344 280 VNMQHSV---MIEAVENHMPETIIIDEIGTELEAL-------A-----AST----I----AQRGVQLVGTAHGMTIDN 334 (701)
Q Consensus 280 ~G~qQRV---~IArAL~~~PdVIILDEPtsgLD~~-------a-----~~~----l----~e~GvtVIiTTHd~~l~~ 334 (701)
..+.... +...+..++|++||+|||++.+|.. . ... + ++.|++||+++|......
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 2222111 2222334689999999999998864 2 111 1 346999999999765443
No 95
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.19 E-value=1e-11 Score=145.87 Aligned_cols=138 Identities=16% Similarity=0.111 Sum_probs=80.9
Q ss_pred cceeccc-c-ccCCEEEEEcCCCCcHHHHHHHHHhcCCC-CCCcEEEEEcCC-cccccCC-CCCCCCCchh--hhccCCC
Q 005344 207 AEIICDL-V-EGGGSILVIGPPGVGKTTLIREIARMLAD-DHMKRVVIVDTS-NEIGGDG-DVPHSGIGRA--RRMQVPN 279 (701)
Q Consensus 207 ~~~L~dl-I-~~GeiilIIGPNGSGKTTLLR~IaGlLsp-~~GkrViiVd~~-~EIa~~~-~ip~~~ig~~--rr~~v~s 279 (701)
..+++++ + .+|++++|+||||||||||||+|+|+.-. ..|. +++.. ..++... .+...+.... ......+
T Consensus 595 ~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~---~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~ 671 (800)
T 1wb9_A 595 PFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS---YVPAQKVEIGPIDRIFTRVGAADDLASGRSTFM 671 (800)
T ss_dssp CCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC---CBSSSEEEECCCCEEEEEEC-----------CH
T ss_pred ceeeecccccCCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc---ccchhcccceeHHHHHhhCCHHHHHHhhhhhhh
Confidence 3456666 5 46899999999999999999999997522 2232 11111 0111100 0011111000 0000112
Q ss_pred hhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHH--------HHHh-cCCEEEEEEcChhHHHHhcCcEEEEeCCeEE
Q 005344 280 VNMQHSVMIEAVENHMPETIIIDEIGTELEALAAS--------TIAQ-RGVQLVGTAHGMTIDNIVKNPSLQILVGGIE 349 (701)
Q Consensus 280 ~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~--------~l~e-~GvtVIiTTHd~~l~~~l~drvlvl~~G~I~ 349 (701)
.+++ ++..+...+.+|++||+|||++|+|+.... .+.+ .|.++|++||+.++.. ++++...+.+|.+.
T Consensus 672 ~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~~ 748 (800)
T 1wb9_A 672 VEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHLD 748 (800)
T ss_dssp HHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEEE
T ss_pred HHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEEE
Confidence 3444 344444568899999999997777654332 2345 4999999999998765 77766556666653
No 96
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.18 E-value=6.6e-13 Score=139.98 Aligned_cols=97 Identities=20% Similarity=0.073 Sum_probs=70.0
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCC-cEEEEEcCCcccc---------cCC--CCCCC-CCchh--------
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHM-KRVVIVDTSNEIG---------GDG--DVPHS-GIGRA-------- 272 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~G-krViiVd~~~EIa---------~~~--~ip~~-~ig~~-------- 272 (701)
+.+|++++|+||||||||||+++|+|++.+..| .+|+++.+....- ... +.+.. .....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~ 166 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK 166 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC
Confidence 567999999999999999999999999988766 5678887653221 000 11110 00000
Q ss_pred -----hhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccH
Q 005344 273 -----RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEA 310 (701)
Q Consensus 273 -----rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~ 310 (701)
......|+|++||+.+|++++.+|++||+|||+..+|.
T Consensus 167 ~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 167 SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 01122467999999999999999999999999998864
No 97
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.15 E-value=4.2e-11 Score=127.77 Aligned_cols=120 Identities=16% Similarity=0.200 Sum_probs=78.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcC--CCCC---CcEEEEEcCCcccc--cCCCCC-CCCCch---hhhc---c-CC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARML--ADDH---MKRVVIVDTSNEIG--GDGDVP-HSGIGR---ARRM---Q-VP 278 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlL--sp~~---GkrViiVd~~~EIa--~~~~ip-~~~ig~---~rr~---~-v~ 278 (701)
+..|++++|+||||||||||++.|++.. .|+. |.++++|++..... ....++ ..++.. ...+ . ..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCC
Confidence 8899999999999999999999999998 5555 24678888754210 000000 001110 0011 1 11
Q ss_pred ChhHHHHHHHHHHHc-------cCCCEEEEcCCCCcccHHH------------HHH-------H-HhcCCEEEEEEcChh
Q 005344 279 NVNMQHSVMIEAVEN-------HMPETIIIDEIGTELEALA------------AST-------I-AQRGVQLVGTAHGMT 331 (701)
Q Consensus 279 s~G~qQRV~IArAL~-------~~PdVIILDEPtsgLD~~a------------~~~-------l-~e~GvtVIiTTHd~~ 331 (701)
+.++.+.+.++..+. .+|++||+|||++.+|+.. ... + .+.|+++|+|+|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 345677787887777 6899999999999998851 111 1 346999999999765
Q ss_pred HH
Q 005344 332 ID 333 (701)
Q Consensus 332 l~ 333 (701)
..
T Consensus 288 ~~ 289 (349)
T 1pzn_A 288 RP 289 (349)
T ss_dssp --
T ss_pred cc
Confidence 43
No 98
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.14 E-value=3.2e-12 Score=125.58 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=72.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc---------------EEEEEcCCcccccCCCCCCCCCchh---h--hcc
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMK---------------RVVIVDTSNEIGGDGDVPHSGIGRA---R--RMQ 276 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk---------------rViiVd~~~EIa~~~~ip~~~ig~~---r--r~~ 276 (701)
|++++|+||||||||||++.|+|++. +.|- +++++.+.. .+....+.....+.. . ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~Gi~~~g~~~~~~~~~~~~ig~~~~~~-~g~~~~l~~~~~~~~~~~~~~~v~ 78 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSGVPVDGFYTEEVRQGGRRIGFDVVTL-SGTRGPLSRVGLEPPPGKRECRVG 78 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTTCCCEEEECCEEETTSSEEEEEEEET-TSCEEEEEECCCCCCSSSCCEESS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCCEEEcCEecchhHhhhceEEEEEEec-ccceehhhcccccCCccccccccc
Confidence 67899999999999999999999987 6552 111111110 000000000000000 0 000
Q ss_pred ----CCChhHHHHH-HHHH---HHccCCCEEEEcC--CCCcccHHHHHHH---HhcCCEEEE--EE--cCh--hHHHHhc
Q 005344 277 ----VPNVNMQHSV-MIEA---VENHMPETIIIDE--IGTELEALAASTI---AQRGVQLVG--TA--HGM--TIDNIVK 337 (701)
Q Consensus 277 ----v~s~G~qQRV-~IAr---AL~~~PdVIILDE--PtsgLD~~a~~~l---~e~GvtVIi--TT--Hd~--~l~~~l~ 337 (701)
.++.|++..+ ++++ |+.++|++||+|| |+..+|......+ .+...++|+ ++ |+. .+++.++
T Consensus 79 ~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~ 158 (189)
T 2i3b_A 79 QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIR 158 (189)
T ss_dssp SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHHH
T ss_pred eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHHe
Confidence 1223444333 2232 4578999999999 6766777665444 344545553 23 886 5555555
Q ss_pred CcEEEEeCCeEEEEecCc
Q 005344 338 NPSLQILVGGIESVTLGD 355 (701)
Q Consensus 338 drvlvl~~G~I~~V~lgd 355 (701)
+. .+|+|..++..+
T Consensus 159 ~~----~~~~i~~~~~~n 172 (189)
T 2i3b_A 159 NR----KDVKVFNVTKEN 172 (189)
T ss_dssp TT----CCSEEEECCSSS
T ss_pred ec----CCcEEEEeChHh
Confidence 43 477875554433
No 99
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.13 E-value=1.3e-11 Score=127.44 Aligned_cols=110 Identities=17% Similarity=0.224 Sum_probs=67.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCCCCc---------------EEEEEcCCcccc---------cCCCCCCC-C-Cchh
Q 005344 219 SILVIGPPGVGKTTLIREIARMLADDHMK---------------RVVIVDTSNEIG---------GDGDVPHS-G-IGRA 272 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp~~Gk---------------rViiVd~~~EIa---------~~~~ip~~-~-ig~~ 272 (701)
+++|+||||||||||+++|+|++.|+.|. .+.++.+...+. +.+..... . ....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 57999999999999999999999988774 223332221100 00000000 0 0000
Q ss_pred ----------hhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH---HhcCCEEEEEEcChhH
Q 005344 273 ----------RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTI---AQRGVQLVGTAHGMTI 332 (701)
Q Consensus 273 ----------rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l---~e~GvtVIiTTHd~~l 332 (701)
....-.++|++||+++|++++. ++++|||+.+||+.....+ .+. +++|++.|-.+.
T Consensus 84 ~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 84 EKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADT 152 (270)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGG
T ss_pred HHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEecccc
Confidence 0112357799999999998776 9999999999988876444 445 889998886543
No 100
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.12 E-value=1.7e-12 Score=138.98 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=97.8
Q ss_pred eEEEEeEEEEECcccccccceeccc--cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC-cccccC-CCC
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL--VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS-NEIGGD-GDV 264 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl--I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~-~EIa~~-~~i 264 (701)
.+++.++++.|+. ...+|+++ |.+|+.++|+||||||||||+++|+|++.++.|. +.++.++ .++... +..
T Consensus 45 ~i~~~~l~~~~~t----g~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~-i~~~G~~~~ev~~~i~~~ 119 (347)
T 2obl_A 45 PLLRQVIDQPFIL----GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIV-LALIGERGREVNEFLALL 119 (347)
T ss_dssp STTCCCCCSEECC----SCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEE-EEEESCCHHHHHHHHTTS
T ss_pred CeeecccceecCC----CCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEE-EEEecccHHHHHHHHHhh
Confidence 4567788888872 24678887 8899999999999999999999999999988663 3333332 111000 000
Q ss_pred ------------CCCCC-------------chhhhc-----cC---------CChhHHHHHHHHHHHccCCCEEEEcCCC
Q 005344 265 ------------PHSGI-------------GRARRM-----QV---------PNVNMQHSVMIEAVENHMPETIIIDEIG 305 (701)
Q Consensus 265 ------------p~~~i-------------g~~rr~-----~v---------~s~G~qQRV~IArAL~~~PdVIILDEPt 305 (701)
.+.+. .....+ .+ .+.|+ |+++++ +++|++ +
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t 189 (347)
T 2obl_A 120 PQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------R 189 (347)
T ss_dssp CHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------B
T ss_pred hhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------c
Confidence 00000 000000 00 13466 788888 577777 8
Q ss_pred CcccHHHHHHH-------H--hcCC-----EEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 306 TELEALAASTI-------A--QRGV-----QLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 306 sgLD~~a~~~l-------~--e~Gv-----tVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
.|+|+.....+ . +.|. ||++++||++ +.+||+++.+.+|+|
T Consensus 190 ~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~I 244 (347)
T 2obl_A 190 GGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHI 244 (347)
T ss_dssp TTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEE
Confidence 99999998654 2 2476 8999999998 688999999999998
No 101
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.10 E-value=1.7e-11 Score=116.70 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=67.0
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~ 293 (701)
+.+|++++|+||||||||||+++|++.+.+..|..+.++.....+... .. .+.-.... . .....
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~--------~~--~~~~~~~~----~--~~~~~ 98 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL--------KH--LMDEGKDT----K--FLKTV 98 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH--------HH--HHHHTCCS----H--HHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--------HH--HhcCchHH----H--HHHHh
Confidence 567999999999999999999999999976667655554432111000 00 00000000 1 11223
Q ss_pred cCCCEEEEcCCCC-cccHHHHHHH-------HhcCCEEEEEEcCh
Q 005344 294 HMPETIIIDEIGT-ELEALAASTI-------AQRGVQLVGTAHGM 330 (701)
Q Consensus 294 ~~PdVIILDEPts-gLD~~a~~~l-------~e~GvtVIiTTHd~ 330 (701)
.+|++||+|||++ ++|......+ .+.|.++|+|||..
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 5899999999985 8898776443 34789999999964
No 102
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.09 E-value=1.1e-12 Score=130.40 Aligned_cols=100 Identities=17% Similarity=0.038 Sum_probs=60.5
Q ss_pred eeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC--------cccccCCCCCC-----------
Q 005344 209 IICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS--------NEIGGDGDVPH----------- 266 (701)
Q Consensus 209 ~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~--------~EIa~~~~ip~----------- 266 (701)
.|+++ +.+|++++|+||||||||||+++|+|++ | |. +.+... .+..+.+.+++
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~--i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NY--FYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TT--EEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--Cc--EEEeecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 35555 7789999999999999999999999998 5 55 333110 00000000000
Q ss_pred -----------CCCch--h---hhc-----cC----CChhHHHHHHH-----HHHHccCCCEEEEcCCCCcccHHHH
Q 005344 267 -----------SGIGR--A---RRM-----QV----PNVNMQHSVMI-----EAVENHMPETIIIDEIGTELEALAA 313 (701)
Q Consensus 267 -----------~~ig~--~---rr~-----~v----~s~G~qQRV~I-----ArAL~~~PdVIILDEPtsgLD~~a~ 313 (701)
...+. . ..+ .+ .++|++||++| +++++..|+++++|||++++|....
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~ 163 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQ 163 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCH
Confidence 00000 0 000 01 26799999999 7888889999999999999886443
No 103
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.09 E-value=1.8e-12 Score=142.73 Aligned_cols=142 Identities=16% Similarity=0.165 Sum_probs=97.7
Q ss_pred eEEEEeEEEEECcccccccceeccc--cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc--cccc----
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL--VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN--EIGG---- 260 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl--I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~--EIa~---- 260 (701)
.+++.++++.|+. ...+|+++ +.+|+.++|+|||||||||||++|+|+..++.|. +.+.+.. ++..
T Consensus 131 ~l~~~~v~~~~~t----g~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~--i~~~G~r~~ev~~~~~~ 204 (438)
T 2dpy_A 131 PLQRTPIEHVLDT----GVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIV--VGLIGERGREVKDFIEN 204 (438)
T ss_dssp TTTSCCCCSBCCC----SCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEE--EEEESCCHHHHHHHHHT
T ss_pred ceEEeccceecCC----CceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEE--EEEeceecHHHHHHHHh
Confidence 4667888888862 24578887 8899999999999999999999999999988763 3333321 1100
Q ss_pred ----------CCCCCCCC--Cc------h-----hh-----hccC---------CChhHHHHHHHHHHHccCCCEEEEcC
Q 005344 261 ----------DGDVPHSG--IG------R-----AR-----RMQV---------PNVNMQHSVMIEAVENHMPETIIIDE 303 (701)
Q Consensus 261 ----------~~~ip~~~--ig------~-----~r-----r~~v---------~s~G~qQRV~IArAL~~~PdVIILDE 303 (701)
...+++.. .. . .. ...+ .+.|+ ||++|| +.+|++
T Consensus 205 ~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~----- 275 (438)
T 2dpy_A 205 ILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA----- 275 (438)
T ss_dssp TTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC-----
T ss_pred hccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc-----
Confidence 00111100 00 0 00 0001 13466 899888 788887
Q ss_pred CCCcccHHHHHHH-------Hh----cCC-----EEEEEEcChhHHHHhcCcEEEEeCCeE
Q 005344 304 IGTELEALAASTI-------AQ----RGV-----QLVGTAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 304 PtsgLD~~a~~~l-------~e----~Gv-----tVIiTTHd~~l~~~l~drvlvl~~G~I 348 (701)
++++|+.....+ .+ .|. ||++++|+++ ..+||.++.+.+|.|
T Consensus 276 -t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~I 333 (438)
T 2dpy_A 276 -TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHI 333 (438)
T ss_dssp -SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEE
T ss_pred -cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEE
Confidence 999999988655 12 263 8999999998 678999999999998
No 104
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=1.2e-10 Score=103.34 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=62.4
Q ss_pred CChHHHHHHH-HHHHHHHHHhcCCCee-eecCCCChHHHHHHHHHHHHcCCceeeccCCCC-ceeEEecCc
Q 005344 590 PTLEEIDALE-EVRLAIEYIVIPGGEA-VELLPRRSEIVARQLELVESYQLAAENSGTELN-PRLQILPLR 657 (701)
Q Consensus 590 ~~~~~~~al~-e~~~ai~~~v~~~~~~-vel~pr~~~i~~~q~~l~~~y~l~~~~~g~~~~-~r~~i~p~~ 657 (701)
++++++++.. +.+.++++++...|++ |+|.|.+++.|+++|++++.|.|.++|+|+||+ |||.|||..
T Consensus 4 ~~~~e~~~yR~~re~~L~~la~~~g~~~v~L~PM~~~eRriIH~~l~~~gl~S~S~Geep~~R~VvI~~~~ 74 (94)
T 2cpm_A 4 GSSGQKVEFRKRMEKEVSDFIQDSGQIKKKFQPMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMIFKKE 74 (94)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHCSSCCEEECCCCCSSHHHHHHHHHHHHTCEEEEECSSSSCCEEEEECST
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCceEeCCCCHHHHHHHHHHHHHCCCEEEEecCCCCceEEEEEeCC
Confidence 4456677766 8999999999999997 999999999999999999999999999999998 999999963
No 105
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.08 E-value=7.6e-11 Score=120.48 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=72.0
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC---------CCcEEEEEcCCccccc-------CC-CCC---------CC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADD---------HMKRVVIVDTSNEIGG-------DG-DVP---------HS 267 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~---------~GkrViiVd~~~EIa~-------~~-~ip---------~~ 267 (701)
+.+|++++|+||||||||||++.|++.+... .+.+|+++........ .+ .+. ..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l 106 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGL 106 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHE
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCce
Confidence 6789999999999999999999999876542 1235667665422100 00 000 00
Q ss_pred CCch--hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCC--cccHHHH----------HHH-HhcCCEEEEEEcChhH
Q 005344 268 GIGR--ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT--ELEALAA----------STI-AQRGVQLVGTAHGMTI 332 (701)
Q Consensus 268 ~ig~--~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPts--gLD~~a~----------~~l-~e~GvtVIiTTHd~~l 332 (701)
.+.. .......+.|+.+++ ++++.+|++||+|||++ ++|.... ..+ ++.|++||+++|....
T Consensus 107 ~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 107 LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG 183 (279)
T ss_dssp EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 0000 011223456765544 56777999999999999 8876211 122 4669999999998765
Q ss_pred H
Q 005344 333 D 333 (701)
Q Consensus 333 ~ 333 (701)
.
T Consensus 184 ~ 184 (279)
T 1nlf_A 184 A 184 (279)
T ss_dssp -
T ss_pred c
Confidence 4
No 106
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.07 E-value=1.1e-10 Score=110.02 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=60.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
+|+.++|+||||||||||+++|++.+.+ .|.++++++...-.. . .+..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~------~------------------------~~~~~ 83 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL------T------------------------DAAFE 83 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC------C------------------------GGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH------H------------------------HHHhC
Confidence 7899999999999999999999999876 476677777642110 0 12457
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------HhcCCE-EEEEEcC
Q 005344 296 PETIIIDEIGTELEALAASTI-------AQRGVQ-LVGTAHG 329 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~e~Gvt-VIiTTHd 329 (701)
|++||+|||+. ++......+ .+.|.+ +|+|+|.
T Consensus 84 ~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 99999999997 443323222 566787 8888884
No 107
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.05 E-value=4.6e-10 Score=106.50 Aligned_cols=69 Identities=10% Similarity=0.034 Sum_probs=58.9
Q ss_pred ccCCChhHHHHHHHH------HHHccCCCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEE
Q 005344 275 MQVPNVNMQHSVMIE------AVENHMPETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSL 341 (701)
Q Consensus 275 ~~v~s~G~qQRV~IA------rAL~~~PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvl 341 (701)
..-.|+|++||++|| ++++.+|++||+||||++||+..+..+ .+.|.++|++||+.. ...+||+++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d~ii 133 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADHVI 133 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSEEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCCEEE
Confidence 345789999999876 788999999999999999999988554 345899999999995 567999999
Q ss_pred EEe
Q 005344 342 QIL 344 (701)
Q Consensus 342 vl~ 344 (701)
.+.
T Consensus 134 ~l~ 136 (148)
T 1f2t_B 134 RIS 136 (148)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 108
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.00 E-value=8.4e-10 Score=116.01 Aligned_cols=113 Identities=21% Similarity=0.227 Sum_probs=72.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc-ccc------------cCCCCCCC-CCc-----------
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN-EIG------------GDGDVPHS-GIG----------- 270 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~-EIa------------~~~~ip~~-~ig----------- 270 (701)
+|++++|+||||||||||++.|+|++.+++|+ |.+..... ..+ ..+.+++. +..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~-V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKK-VMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCC-EEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCE-EEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999999999998776 44433221 000 01111111 000
Q ss_pred -hhhhcc--------C-------CChhHHHHHHHHHHHccCCC--EEEEcCCCCcccHHHH-HHHH-hcCCEEEEEEcCh
Q 005344 271 -RARRMQ--------V-------PNVNMQHSVMIEAVENHMPE--TIIIDEIGTELEALAA-STIA-QRGVQLVGTAHGM 330 (701)
Q Consensus 271 -~~rr~~--------v-------~s~G~qQRV~IArAL~~~Pd--VIILDEPtsgLD~~a~-~~l~-e~GvtVIiTTHd~ 330 (701)
...... . .+...+|+++|++++...|+ ++++| ++++.+.... ..+. ..|.++|++||+.
T Consensus 180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 000000 0 01134789999999999999 77788 5556665543 4444 4599999999974
No 109
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.97 E-value=8.1e-11 Score=118.25 Aligned_cols=131 Identities=13% Similarity=0.080 Sum_probs=76.0
Q ss_pred ccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC----CCcEEEEEcCCcccccC----------CCCC--C
Q 005344 206 SAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADD----HMKRVVIVDTSNEIGGD----------GDVP--H 266 (701)
Q Consensus 206 ~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~----~GkrViiVd~~~EIa~~----------~~ip--~ 266 (701)
...+|+++ +.+|++++|+||||||||||+++|+|++... ..+.|+++++....... +... .
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~ 90 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDH 90 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTS
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCC
Confidence 44577777 7889999999999999999999999976211 12346677765311100 0000 0
Q ss_pred CC-Cc------hhh--------hccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcC-h
Q 005344 267 SG-IG------RAR--------RMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHG-M 330 (701)
Q Consensus 267 ~~-ig------~~r--------r~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd-~ 330 (701)
.. .. ... .....+.|+++|+.+ +++...|++||+|||....+.... ...+.+|++++|+ .
T Consensus 91 ~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~---~~~~~~i~v~th~~~ 166 (245)
T 2jeo_A 91 PDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEIR---DMFHLRLFVDTDSDV 166 (245)
T ss_dssp GGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHHH---TTCSEEEEEECCHHH
T ss_pred cccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHHH---HhcCeEEEEECCHHH
Confidence 00 00 000 111234578888766 467788999999999876665422 1248899999997 4
Q ss_pred hHHHHhcCcE
Q 005344 331 TIDNIVKNPS 340 (701)
Q Consensus 331 ~l~~~l~drv 340 (701)
.+...+++.+
T Consensus 167 ~~~r~~~r~~ 176 (245)
T 2jeo_A 167 RLSRRVLRDV 176 (245)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 110
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.94 E-value=3e-10 Score=124.46 Aligned_cols=114 Identities=25% Similarity=0.332 Sum_probs=76.3
Q ss_pred eeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHH
Q 005344 209 IICDL-VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVM 287 (701)
Q Consensus 209 ~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~ 287 (701)
+|+++ ..+|++++|+|||||||||||++|+|++.+..|. |.++.+..+.... .+.+..+. ...|.-..-.
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~-I~~~ed~ie~~~~-~~~q~~v~-------~~~g~~f~~~ 228 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERN-ILTVEDPIEFDID-GIGQTQVN-------PRVDMTFARG 228 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC-EEEEESSCCSCCS-SSEEEECB-------GGGTBCHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCE-EEEecccchhccC-CcceEEEc-------cccCcCHHHH
Confidence 45555 4578999999999999999999999999888766 5555554333111 11111111 0112223345
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHHHHHHhcCCEEEEEEcChh
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGMT 331 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~~~l~e~GvtVIiTTHd~~ 331 (701)
+..++.++|++++++|+...+.+...-.+...|..++.+.|..+
T Consensus 229 lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~ 272 (418)
T 1p9r_A 229 LRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNT 272 (418)
T ss_dssp HHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred HHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhh
Confidence 66788899999999999966655555555678888877778654
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.87 E-value=4.5e-10 Score=107.94 Aligned_cols=122 Identities=9% Similarity=0.051 Sum_probs=69.6
Q ss_pred eEEEEeEEEEECcccccccceeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcC-----CCCCCcE-----------EEE
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL-VEGGGSILVIGPPGVGKTTLIREIARML-----ADDHMKR-----------VVI 251 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlL-----sp~~Gkr-----------Vii 251 (701)
++++++|+++|+. .+++++ +.+|..++|+|+||||||||++.|+|.. .++.|.. +.+
T Consensus 3 ~l~~~~~~~~~~~------~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l 76 (210)
T 1pui_A 3 NLNYQQTHFVMSA------PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL 76 (210)
T ss_dssp --------CEEEE------SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE
T ss_pred chhhhhhhheeec------CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE
Confidence 4789999999972 466667 8889999999999999999999999987 6665531 223
Q ss_pred EcCCccc----------------ccC----CCCC--------CCCCch-------------------hhhccCCChhHHH
Q 005344 252 VDTSNEI----------------GGD----GDVP--------HSGIGR-------------------ARRMQVPNVNMQH 284 (701)
Q Consensus 252 Vd~~~EI----------------a~~----~~ip--------~~~ig~-------------------~rr~~v~s~G~qQ 284 (701)
+|+.... ... .... ...... ....+..+.|++|
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~ 156 (210)
T 1pui_A 77 VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARK 156 (210)
T ss_dssp EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHH
T ss_pred EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHH
Confidence 3432110 000 0000 000000 0011223567888
Q ss_pred H-HHHHHHHccCCCEEEEcCCCCcccHHHHHHH
Q 005344 285 S-VMIEAVENHMPETIIIDEIGTELEALAASTI 316 (701)
Q Consensus 285 R-V~IArAL~~~PdVIILDEPtsgLD~~a~~~l 316 (701)
+ +..+++++.+|.+++.|||++++|......+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l 189 (210)
T 1pui_A 157 AQLNMVREAVLAFNGDVQVETFSSLKKQGVDKL 189 (210)
T ss_dssp HHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHH
T ss_pred HHHHHHHHHHHhcCCCCceEEEeecCCCCHHHH
Confidence 7 7788888889988899999999998776554
No 112
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.82 E-value=2.7e-10 Score=119.02 Aligned_cols=126 Identities=16% Similarity=0.178 Sum_probs=56.1
Q ss_pred EeEEEEECcccccccceeccc-cccCCEEEEEcCCCCcHHHHHHHHHhc-CCCCCCc--------------EEEEEcCCc
Q 005344 193 IGLTCRVGRAVAGSAEIICDL-VEGGGSILVIGPPGVGKTTLIREIARM-LADDHMK--------------RVVIVDTSN 256 (701)
Q Consensus 193 ~nLs~rygr~v~G~~~~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGl-Lsp~~Gk--------------rViiVd~~~ 256 (701)
.+|++.|++ ..+++++ + .++|+|+||||||||++.|+|. +.++.|. .+.++.+..
T Consensus 2 ~~l~~~~~~-----~~~l~~~~~----~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 2 SNLPNQVHR-----KSVKKGFEF----TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp ---------------------CE----EEEEEEETTSSHHHHHHHHHC------------------------CEEEEC--
T ss_pred CCCcceECC-----EEEEcCCCE----EEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCC
Confidence 367888874 3566666 2 3499999999999999999997 6665541 011111110
Q ss_pred cc---------ccCCCCCC--CCCch-h--------hhccCCChhHHHHHHHHHHHccCCCEEEEcCCCCc-ccHHHHHH
Q 005344 257 EI---------GGDGDVPH--SGIGR-A--------RRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGTE-LEALAAST 315 (701)
Q Consensus 257 EI---------a~~~~ip~--~~ig~-~--------rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsg-LD~~a~~~ 315 (701)
.. .+.+.... ..... . ..+.-.++|++|++.++++++ +|++|||+++ ||+.....
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~ 148 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAF 148 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHH
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHH
Confidence 00 00000000 00000 0 011113456666665555543 9999999874 99987644
Q ss_pred HH----hcCCEEEEEEcChh
Q 005344 316 IA----QRGVQLVGTAHGMT 331 (701)
Q Consensus 316 l~----e~GvtVIiTTHd~~ 331 (701)
+. +.++++|++.||+.
T Consensus 149 l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 149 MKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHhcCCEEEEEEeCCCC
Confidence 42 23788888899864
No 113
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.81 E-value=4.4e-09 Score=125.12 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=67.9
Q ss_pred cCCChhHHHHHHHHHHHccCCC--EEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE---
Q 005344 276 QVPNVNMQHSVMIEAVENHMPE--TIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI--- 343 (701)
Q Consensus 276 ~v~s~G~qQRV~IArAL~~~Pd--VIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl--- 343 (701)
.-+|+|++||+.||++|.++|+ +|||||||++||+.....+ ++.|.|||+++||++++.. ||+++.|
T Consensus 463 ~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~-aD~ii~lgpg 541 (916)
T 3pih_A 463 TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN-ADHIIDIGPG 541 (916)
T ss_dssp GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT-CSEEEEEESS
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEEcCC
Confidence 3468899999999999999877 9999999999999887544 4569999999999998865 9999999
Q ss_pred ---eCCeEEEEecCcHHH
Q 005344 344 ---LVGGIESVTLGDEEA 358 (701)
Q Consensus 344 ---~~G~I~~V~lgd~~a 358 (701)
..|++ +..|+.+.
T Consensus 542 ag~~~G~i--v~~G~~~e 557 (916)
T 3pih_A 542 GGTNGGRV--VFQGTVDE 557 (916)
T ss_dssp SGGGCSEE--EEEECHHH
T ss_pred cccCCCEE--EEeechhh
Confidence 77888 55666544
No 114
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.79 E-value=8.2e-09 Score=112.56 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=66.2
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHH--HhcCCCCC---CcEEEEEcCCcccccC--C-CCCCCCCchh---hhc---cCCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREI--ARMLADDH---MKRVVIVDTSNEIGGD--G-DVPHSGIGRA---RRM---QVPN 279 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~I--aGlLsp~~---GkrViiVd~~~EIa~~--~-~ip~~~ig~~---rr~---~v~s 279 (701)
|.+|++++|+||||||||||++.| +++++++. +..++|+++....... . .....++... ..+ ...+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 889999999999999999999955 45555533 3567888876421100 0 0000111100 000 1111
Q ss_pred hhHHHHHHH----HHHHccCCCEEEEcCCCCcccHHHH-------------------HHH-HhcCCEEEEEEcCh
Q 005344 280 VNMQHSVMI----EAVENHMPETIIIDEIGTELEALAA-------------------STI-AQRGVQLVGTAHGM 330 (701)
Q Consensus 280 ~G~qQRV~I----ArAL~~~PdVIILDEPtsgLD~~a~-------------------~~l-~e~GvtVIiTTHd~ 330 (701)
...+.-.+ ..+..+.|++||+|||++.++.... ..+ ++.|++||+++|..
T Consensus 255 -~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 255 -ADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp -HHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred -hHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 22222222 2233468999999999988774211 112 45699999999973
No 115
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.78 E-value=1.4e-08 Score=101.80 Aligned_cols=112 Identities=16% Similarity=0.166 Sum_probs=66.6
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCC--CCCcEEEEEcCCcc----cccCCCCCCCC--Cchh-------hhccCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLAD--DHMKRVVIVDTSNE----IGGDGDVPHSG--IGRA-------RRMQVP 278 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp--~~GkrViiVd~~~E----Ia~~~~ip~~~--ig~~-------rr~~v~ 278 (701)
+++|++++|+||||||||||+++|+|+++| ..|. +.+.+... ..+.+.+++.. +... ....+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~--v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVS--VSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEEC--CCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEE--EEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 678999999999999999999999999985 3332 22333211 11111111110 0000 000000
Q ss_pred --ChhH-HHHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHh---cCCEEEEEEcChhHHHH
Q 005344 279 --NVNM-QHSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ---RGVQLVGTAHGMTIDNI 335 (701)
Q Consensus 279 --s~G~-qQRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e---~GvtVIiTTHd~~l~~~ 335 (701)
..|. ++. +. .....++++|+| ||+..+..+.+ .|++|++++|+.+.+..
T Consensus 91 ~~~yg~~~~~--v~-~~l~~G~illLD-----LD~~~~~~i~~~l~~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 91 GNYYGTSREA--IE-QVLATGVDVFLD-----IDWQGAQQIRQKMPHARSIFILPPSKIELDR 145 (219)
T ss_dssp TEEEEEEHHH--HH-HHHTTTCEEEEE-----CCHHHHHHHHHHCTTCEEEEEECSSHHHHHH
T ss_pred hccCCCCHHH--HH-HHHhcCCeEEEE-----ECHHHHHHHHHHccCCEEEEEECCCHHHHHH
Confidence 0121 222 22 334568999999 99999877743 58999999999887654
No 116
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.74 E-value=1.3e-09 Score=119.60 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=71.0
Q ss_pred eEEEEeEEEEECcccccccceeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc--------------EEEEEc
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIICDL-VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK--------------RVVIVD 253 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk--------------rViiVd 253 (701)
++.+.+|+++|++ ..+++++ + .++|+|+||||||||++.|+|...+..|. .+.++.
T Consensus 11 ~l~~~~l~~~y~~-----~~vl~~vsf----~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 11 YVGFANLPNQVYR-----KSVKRGFEF----TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp ----CCCCCCTTT-----TTCC-CCCE----EEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-
T ss_pred cEEEEecceeECC-----EEEecCCCE----EEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEE
Confidence 4678899998873 3567776 3 24999999999999999999998643220 011111
Q ss_pred CCcccc-cCCCCCCCCCchhh-------hc-----cCCChhHHHHHHHHHHHccCCC---EEEEcCCC-CcccHHHHHHH
Q 005344 254 TSNEIG-GDGDVPHSGIGRAR-------RM-----QVPNVNMQHSVMIEAVENHMPE---TIIIDEIG-TELEALAASTI 316 (701)
Q Consensus 254 ~~~EIa-~~~~ip~~~ig~~r-------r~-----~v~s~G~qQRV~IArAL~~~Pd---VIILDEPt-sgLD~~a~~~l 316 (701)
+..... ........+++... .+ .-.+.++++++.|++++..+|+ +|++|||| .++|+.....+
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~l 161 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFM 161 (418)
T ss_dssp -----CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHH
T ss_pred ecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHH
Confidence 110000 00000000111100 00 0001234456668888889999 99999998 68988764333
Q ss_pred --HhcCCEEEEEEcChh
Q 005344 317 --AQRGVQLVGTAHGMT 331 (701)
Q Consensus 317 --~e~GvtVIiTTHd~~ 331 (701)
...++.+|++.|-.+
T Consensus 162 k~L~~~v~iIlVinK~D 178 (418)
T 2qag_C 162 KRLHEKVNIIPLIAKAD 178 (418)
T ss_dssp HHHTTTSEEEEEEESTT
T ss_pred HHHhccCcEEEEEEccc
Confidence 224788888887544
No 117
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.71 E-value=5.5e-09 Score=119.27 Aligned_cols=106 Identities=16% Similarity=0.127 Sum_probs=57.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCC-CCCcEEEEEcCCc----------ccc-cCCCCCCC-CCchhhhccCCChhHHHH
Q 005344 219 SILVIGPPGVGKTTLIREIARMLAD-DHMKRVVIVDTSN----------EIG-GDGDVPHS-GIGRARRMQVPNVNMQHS 285 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp-~~GkrViiVd~~~----------EIa-~~~~ip~~-~ig~~rr~~v~s~G~qQR 285 (701)
.++|+|||||||||||++|+|++.| ++|. +.+++.. +.. ..+.+++. .+ .........
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~--vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l-------~~~~tv~e~ 117 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGI--VTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEI-------SDASEVEKE 117 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC---------CCCSCEEEEEEECSSSSCCEEEESCC---CCC-------CCHHHHHTT
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCe--EEEcCEEEEEecCCccccceeEEeeecccccC-------CCHHHHHHH
Confidence 4899999999999999999999978 6665 3333221 110 00111110 00 000011111
Q ss_pred HHHH-------------------HHHccCCCEEEEcCC------CCcccHHHHHHH---------HhcCCEEEEEEcChh
Q 005344 286 VMIE-------------------AVENHMPETIIIDEI------GTELEALAASTI---------AQRGVQLVGTAHGMT 331 (701)
Q Consensus 286 V~IA-------------------rAL~~~PdVIILDEP------tsgLD~~a~~~l---------~e~GvtVIiTTHd~~ 331 (701)
+..+ ....+.|+++++||| +++||+.....+ ...++.+++++|+.+
T Consensus 118 i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 118 INKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccch
Confidence 1111 112246999999999 999998776333 124789999999977
Q ss_pred HH
Q 005344 332 ID 333 (701)
Q Consensus 332 l~ 333 (701)
.+
T Consensus 198 ~a 199 (608)
T 3szr_A 198 IA 199 (608)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 118
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.71 E-value=3.9e-11 Score=116.59 Aligned_cols=112 Identities=21% Similarity=0.192 Sum_probs=69.5
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCC--------C--CC-CCchh------hhcc-
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDV--------P--HS-GIGRA------RRMQ- 276 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~i--------p--~~-~ig~~------rr~~- 276 (701)
.+|++++|+||||||||||+++|+|++.+ ++.++++...+...... . .. ..... ..+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE----RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLR 79 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG----GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC----CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence 46889999999999999999999999865 45677664322100000 0 00 00000 0000
Q ss_pred ---------CCChhH----HHHHHHHHHHccCCCEEEEcCCCCc-------ccHHHHHH----H----HhcCCEEEEEEc
Q 005344 277 ---------VPNVNM----QHSVMIEAVENHMPETIIIDEIGTE-------LEALAAST----I----AQRGVQLVGTAH 328 (701)
Q Consensus 277 ---------v~s~G~----qQRV~IArAL~~~PdVIILDEPtsg-------LD~~a~~~----l----~e~GvtVIiTTH 328 (701)
-.+.|+ +|++.++++++.+|.++++|||+++ ||+..... + .++|.+++.++|
T Consensus 80 ~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 80 GLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp TCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 012333 3566677788888888889999988 88754422 2 235888888888
Q ss_pred Ch
Q 005344 329 GM 330 (701)
Q Consensus 329 d~ 330 (701)
+.
T Consensus 160 ~~ 161 (211)
T 3asz_A 160 QY 161 (211)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 119
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.71 E-value=1.5e-08 Score=113.10 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=59.7
Q ss_pred CChhHHHHHHHHHHHccCC--CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEeCC
Q 005344 278 PNVNMQHSVMIEAVENHMP--ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQILVG 346 (701)
Q Consensus 278 ~s~G~qQRV~IArAL~~~P--dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl~~G 346 (701)
.|+|++||++||++++++| ++||+|||+++||+.+...+ ++ |.+||++||+..++. +||+++++..+
T Consensus 398 ~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~-~~d~~~~~~~~ 473 (517)
T 4ad8_A 398 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAA-RAHHHYKVEKQ 473 (517)
T ss_dssp SCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHH-HSSEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEEEEecc
Confidence 3999999999999999999 99999999999999987544 33 899999999999886 59999999654
No 120
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.70 E-value=4.7e-09 Score=109.80 Aligned_cols=127 Identities=14% Similarity=0.074 Sum_probs=76.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccC----CChhHHHHHHHHH
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV----PNVNMQHSVMIEA 290 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v----~s~G~qQRV~IAr 290 (701)
.+|++++|+|+|||||||+++.|++.+.+..|++|.+++....-... ..+... .....++ .......+.+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a--~eqL~~-~~~~~gl~~~~~~~~~~l~~al~- 178 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAA--VEQLKT-YAELLQAPLEVCYTKEEFQQAKE- 178 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTH--HHHHHH-HHTTTTCCCCBCSSHHHHHHHHH-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchH--HHHHHH-HHHhcCCCeEecCCHHHHHHHHH-
Confidence 46889999999999999999999999988779889988865311000 000000 0000111 011122344444
Q ss_pred HHccCCCEEEEcCCCCcccHHHH---HHH---H----hcCCEEEE-EEcChhHHHHhcCcEEEEeCCeE
Q 005344 291 VENHMPETIIIDEIGTELEALAA---STI---A----QRGVQLVG-TAHGMTIDNIVKNPSLQILVGGI 348 (701)
Q Consensus 291 AL~~~PdVIILDEPtsgLD~~a~---~~l---~----e~GvtVIi-TTHd~~l~~~l~drvlvl~~G~I 348 (701)
...+|++||+| |.++|.... .++ . ..++.+++ ++|+.+.+..+++.+..+..+++
T Consensus 179 -~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~gi 244 (296)
T 2px0_A 179 -LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQY 244 (296)
T ss_dssp -HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEE
T ss_pred -HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEE
Confidence 44899999999 555665432 222 1 12334444 47998888888877655555665
No 121
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.69 E-value=2.2e-08 Score=119.67 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=67.5
Q ss_pred cCCChhHHHHHHHHHHHccC--CCEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE---
Q 005344 276 QVPNVNMQHSVMIEAVENHM--PETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI--- 343 (701)
Q Consensus 276 ~v~s~G~qQRV~IArAL~~~--PdVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl--- 343 (701)
.-+|+|++||+.||++|.++ |++|||||||++||+.....+ ++.|.|||+++|+.+++. .||+++.|
T Consensus 520 ~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~Lgp~ 598 (993)
T 2ygr_A 520 ATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIVDIGPG 598 (993)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEEEECSS
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEEEecCc
Confidence 34688999999999999998 599999999999999887543 567999999999999876 79999999
Q ss_pred ---eCCeEEEEecCcHHH
Q 005344 344 ---LVGGIESVTLGDEEA 358 (701)
Q Consensus 344 ---~~G~I~~V~lgd~~a 358 (701)
..|++ +..|+...
T Consensus 599 aG~~gG~i--v~~G~~~e 614 (993)
T 2ygr_A 599 AGEHGGRI--VHSGPYDE 614 (993)
T ss_dssp SGGGCCSC--CEEECHHH
T ss_pred cccCCCEE--EEeeCHHH
Confidence 57777 44555543
No 122
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.67 E-value=1.8e-08 Score=120.01 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=65.9
Q ss_pred cCCChhHHHHHHHHHHHccCC--CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE---
Q 005344 276 QVPNVNMQHSVMIEAVENHMP--ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI--- 343 (701)
Q Consensus 276 ~v~s~G~qQRV~IArAL~~~P--dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl--- 343 (701)
.-+|+|++||+.||++|.++| ++|||||||++||+.....+ ++.|.|||+++|+.+++. .||+++.|
T Consensus 503 ~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~Lgpg 581 (972)
T 2r6f_A 503 GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPG 581 (972)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSS
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCC
Confidence 346889999999999999984 99999999999999877443 567999999999999876 69999999
Q ss_pred ---eCCeEEEEecCcH
Q 005344 344 ---LVGGIESVTLGDE 356 (701)
Q Consensus 344 ---~~G~I~~V~lgd~ 356 (701)
..|++ +..|+.
T Consensus 582 aG~~gG~i--v~~G~~ 595 (972)
T 2r6f_A 582 AGIHGGEV--VAAGTP 595 (972)
T ss_dssp SGGGCCSE--EEEECT
T ss_pred ccCCCCEE--EEecCH
Confidence 67887 444544
No 123
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.66 E-value=1.5e-09 Score=115.56 Aligned_cols=32 Identities=16% Similarity=0.408 Sum_probs=30.5
Q ss_pred ccc--CCEEEEEcCCCCcHHHHHHHHHhcCCCCC
Q 005344 214 VEG--GGSILVIGPPGVGKTTLIREIARMLADDH 245 (701)
Q Consensus 214 I~~--GeiilIIGPNGSGKTTLLR~IaGlLsp~~ 245 (701)
+.+ |+.++|+||||||||||+++|+|++.++.
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 778 99999999999999999999999999887
No 124
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.63 E-value=6.2e-08 Score=102.94 Aligned_cols=131 Identities=21% Similarity=0.220 Sum_probs=78.8
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc-c---------c---cCCCCCC-CCCc----------
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-I---------G---GDGDVPH-SGIG---------- 270 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-I---------a---~~~~ip~-~~ig---------- 270 (701)
.+|++++|+||||||||||++.|+|++.+++|+ |.+...... . + +...+++ .+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~-V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFS-VVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCC-EEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCE-EEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 568999999999999999999999999998776 444332110 0 0 0000010 0000
Q ss_pred --hhhh-----------ccCCChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHH-HHHH-hcCCEEEEEEcCh-----
Q 005344 271 --RARR-----------MQVPNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAA-STIA-QRGVQLVGTAHGM----- 330 (701)
Q Consensus 271 --~~rr-----------~~v~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~-~~l~-e~GvtVIiTTHd~----- 330 (701)
.... .+....-+.+...+++++..++.++++|..+ +.|.... +.+. ..|+++|++||..
T Consensus 206 ~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t-~~~~~~~~~~~~~~~~it~iilTKlD~~a~~ 284 (328)
T 3e70_C 206 HAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALA-GNAIVEQARQFNEAVKIDGIILTKLDADARG 284 (328)
T ss_dssp HHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGG-TTHHHHHHHHHHHHSCCCEEEEECGGGCSCC
T ss_pred HHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHH-HHHHHHHHHHHHHhcCCCEEEEeCcCCccch
Confidence 0000 0111123455556888888888999999766 5666654 3444 4699999999943
Q ss_pred ----hHHHHhcCcEEEEeCCe
Q 005344 331 ----TIDNIVKNPSLQILVGG 347 (701)
Q Consensus 331 ----~l~~~l~drvlvl~~G~ 347 (701)
+......-|+..+-.|.
T Consensus 285 G~~l~~~~~~~~pi~~i~~Ge 305 (328)
T 3e70_C 285 GAALSISYVIDAPILFVGVGQ 305 (328)
T ss_dssp HHHHHHHHHHTCCEEEEECSS
T ss_pred hHHHHHHHHHCCCEEEEeCCC
Confidence 23334445555555554
No 125
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.62 E-value=2.9e-08 Score=117.30 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=65.6
Q ss_pred cCCChhHHHHHHHHHHHccCC--CEEEEcCCCCcccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE---
Q 005344 276 QVPNVNMQHSVMIEAVENHMP--ETIIIDEIGTELEALAASTI-------AQRGVQLVGTAHGMTIDNIVKNPSLQI--- 343 (701)
Q Consensus 276 ~v~s~G~qQRV~IArAL~~~P--dVIILDEPtsgLD~~a~~~l-------~e~GvtVIiTTHd~~l~~~l~drvlvl--- 343 (701)
.-+|+|++||+.||++|.++| .+|||||||++||+.....+ ++.|.|||+++|+++++. .||+++.|
T Consensus 378 ~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii~lgpg 456 (842)
T 2vf7_A 378 PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR-RADWLVDVGPE 456 (842)
T ss_dssp GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT-TCSEEEEECSS
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH-hCCEEEEeCCC
Confidence 346889999999999999999 49999999999998877443 667999999999999775 69999999
Q ss_pred ---eCCeEEEEecCcH
Q 005344 344 ---LVGGIESVTLGDE 356 (701)
Q Consensus 344 ---~~G~I~~V~lgd~ 356 (701)
..|++ +..++.
T Consensus 457 aG~~~G~i--v~~g~~ 470 (842)
T 2vf7_A 457 AGEKGGEI--LYSGPP 470 (842)
T ss_dssp SGGGCCSE--EEEECG
T ss_pred cccCCCEE--EEecCH
Confidence 67777 444544
No 126
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=6.9e-08 Score=100.54 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=62.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh-cCCCCCCcEEEEEcCCccc------ccCCCCCCC---CCchhhhccCCCh-hHHHHHH
Q 005344 219 SILVIGPPGVGKTTLIREIAR-MLADDHMKRVVIVDTSNEI------GGDGDVPHS---GIGRARRMQVPNV-NMQHSVM 287 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaG-lLsp~~GkrViiVd~~~EI------a~~~~ip~~---~ig~~rr~~v~s~-G~qQRV~ 287 (701)
.++|.||||+|||||++.|++ ++.++.|. +.+++.... ..+..+++. .+... ....... -.+..+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~ 114 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYR--LKIDVRQFVTASNRKLELNVVSSPYHLEITPS-DMGNNDRIVIQELLK 114 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----CCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCe--EEecceeecccccccceeeeecccceEEecHh-hcCCcchHHHHHHHH
Confidence 489999999999999999999 77777765 333322100 000000000 00000 0000000 0111110
Q ss_pred HH------------HHHccCCCEEEEcCCCCcccHHHHHHHH------hcCCEEEEEEcChh-HHHHhcCcEEEE
Q 005344 288 IE------------AVENHMPETIIIDEIGTELEALAASTIA------QRGVQLVGTAHGMT-IDNIVKNPSLQI 343 (701)
Q Consensus 288 IA------------rAL~~~PdVIILDEPtsgLD~~a~~~l~------e~GvtVIiTTHd~~-l~~~l~drvlvl 343 (701)
-. ..+..+|++||+|||++ ||..+...+. ..++++|+++|+.. +...+..+...+
T Consensus 115 ~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~ 188 (354)
T 1sxj_E 115 EVAQMEQVDFQDSKDGLAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLI 188 (354)
T ss_dssp HHTTTTC------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEE
T ss_pred HHHHhccccccccccccCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEE
Confidence 00 01245899999999997 9998876552 24789999999864 223344444333
No 127
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.60 E-value=7.9e-08 Score=94.30 Aligned_cols=130 Identities=13% Similarity=0.131 Sum_probs=69.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccc-------ccCCCCCC-------C---C-----Cch
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEI-------GGDGDVPH-------S---G-----IGR 271 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EI-------a~~~~ip~-------~---~-----ig~ 271 (701)
+.+|++++|+||||||||||+..++....+. |.+++++...... ...+..++ . . ++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 98 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGK 98 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTTCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhccc
Confidence 7889999999999999999977665544333 4557777654211 00010000 0 0 000
Q ss_pred h---hhccCC-ChhHHH-HHHHHH-HHccCCCEEEEcCCCCcc--cHHHH--------HHHHhcCCEEEEEEcChhH---
Q 005344 272 A---RRMQVP-NVNMQH-SVMIEA-VENHMPETIIIDEIGTEL--EALAA--------STIAQRGVQLVGTAHGMTI--- 332 (701)
Q Consensus 272 ~---rr~~v~-s~G~qQ-RV~IAr-AL~~~PdVIILDEPtsgL--D~~a~--------~~l~e~GvtVIiTTHd~~l--- 332 (701)
. ...... .....+ .-.+.. +...+|+++++|+++.-+ |.... ..+++.|+++|+++|....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~ 178 (247)
T 2dr3_A 99 SKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERG 178 (247)
T ss_dssp --CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----C
T ss_pred ccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccc
Confidence 0 000000 011111 111222 223689999999999755 43211 1225679999999997664
Q ss_pred -----HHHhcCcEEEEe
Q 005344 333 -----DNIVKNPSLQIL 344 (701)
Q Consensus 333 -----~~~l~drvlvl~ 344 (701)
...++|.++.+.
T Consensus 179 ~~~~~~~~~~D~vi~L~ 195 (247)
T 2dr3_A 179 FGGPGVEHGVDGIIRLD 195 (247)
T ss_dssp CC-CCHHHHSSEEEEEE
T ss_pred ccccccceeEEEEEEEE
Confidence 234556655554
No 128
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.55 E-value=1.5e-08 Score=96.87 Aligned_cols=45 Identities=27% Similarity=0.183 Sum_probs=37.9
Q ss_pred ceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 208 EIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 208 ~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
.+++++ +.+|++++|+||||||||||+|+|+|++ |+.|. +.+++.
T Consensus 21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~--V~~~g~ 68 (158)
T 1htw_A 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGN--VKSPTY 68 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSC--CCCCTT
T ss_pred HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCe--EEECCE
Confidence 456665 7999999999999999999999999999 88887 444443
No 129
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.49 E-value=2.3e-07 Score=99.26 Aligned_cols=115 Identities=15% Similarity=0.188 Sum_probs=67.5
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccC-CChhHHHHHHHHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV-PNVNMQHSVMIEAVE 292 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v-~s~G~qQRV~IArAL 292 (701)
+.+|++++|.||||||||||+..++...... |.++.|++........ .....++... .+.+ ......+.+.++..+
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~~~~~~-~a~~lG~~~~-~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEHALDPE-YAKKLGVDTD-SLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH-HHHHTTCCGG-GCEEECCSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCcCHH-HHHHcCCCHH-HeEEecCCCHHHHHHHHHHH
Confidence 6689999999999999999998888766543 4567888765311100 0000111110 1100 111123334455555
Q ss_pred c--cCCCEEEEcCCCCcc----------cH----HHH------HHH----HhcCCEEEEEEcChh
Q 005344 293 N--HMPETIIIDEIGTEL----------EA----LAA------STI----AQRGVQLVGTAHGMT 331 (701)
Q Consensus 293 ~--~~PdVIILDEPtsgL----------D~----~a~------~~l----~e~GvtVIiTTHd~~ 331 (701)
+ ..|++||+||+++-+ |. .++ ..+ ++.|++||+++|-..
T Consensus 135 ~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 135 VRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 4 469999999999765 32 111 222 567999999999653
No 130
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.46 E-value=4.3e-07 Score=88.25 Aligned_cols=73 Identities=10% Similarity=0.053 Sum_probs=57.9
Q ss_pred ccCCChhHHHHHHHHHHHcc----CCCEEEEcCCCCcccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEE-
Q 005344 275 MQVPNVNMQHSVMIEAVENH----MPETIIIDEIGTELEALAASTI------AQRGVQLVGTAHGMTIDNIVKNPSLQI- 343 (701)
Q Consensus 275 ~~v~s~G~qQRV~IArAL~~----~PdVIILDEPtsgLD~~a~~~l------~e~GvtVIiTTHd~~l~~~l~drvlvl- 343 (701)
....|+|+||+++||++++. .|+++|+|||+++||+.+...+ ...+.++|++||+.... .+||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~~v~ 140 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKIIGVS 140 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEEEEE
Confidence 44579999999999999975 4699999999999999988554 12467899999997664 689998744
Q ss_pred -eCCeE
Q 005344 344 -LVGGI 348 (701)
Q Consensus 344 -~~G~I 348 (701)
.+|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 35543
No 131
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.44 E-value=2.5e-07 Score=99.59 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=61.4
Q ss_pred CCChhHHHHHHHHHHHc---------cCCCEEEEcCCCCcccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 005344 277 VPNVNMQHSVMIEAVEN---------HMPETIIIDEIGTELEALAASTI----AQRGVQLVGTAHGMTIDNIVKNPSLQI 343 (701)
Q Consensus 277 v~s~G~qQRV~IArAL~---------~~PdVIILDEPtsgLD~~a~~~l----~e~GvtVIiTTHd~~l~~~l~drvlvl 343 (701)
..|.||||+++||++|+ .+|++||+|||+++||+..+..+ .+.+.++|++||. +. .+++++.+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~~~i~~l 340 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GAALTLRA 340 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TCSEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cCCEEEEE
Confidence 46889999999999999 89999999999999999988655 3445678888884 33 89999999
Q ss_pred eCCeEEEEecCcH
Q 005344 344 LVGGIESVTLGDE 356 (701)
Q Consensus 344 ~~G~I~~V~lgd~ 356 (701)
..|++ +..+++
T Consensus 341 ~~G~i--~~~g~~ 351 (359)
T 2o5v_A 341 QAGRF--TPVADE 351 (359)
T ss_dssp ETTEE--EECCCT
T ss_pred ECCEE--EecCCH
Confidence 99998 444444
No 132
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.41 E-value=3e-07 Score=102.97 Aligned_cols=38 Identities=34% Similarity=0.464 Sum_probs=33.2
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEE
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiV 252 (701)
+..|++++|+|+||||||||++.|+|++.+.+|+ |.+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~-V~l~ 327 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKS-VMLA 327 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCC-EEEE
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCe-EEEe
Confidence 6789999999999999999999999999988776 4443
No 133
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.41 E-value=1.2e-07 Score=99.88 Aligned_cols=89 Identities=24% Similarity=0.285 Sum_probs=59.2
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc-cccCCCC----CCCCCchhhhccCCChhHHHHH--
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE-IGGDGDV----PHSGIGRARRMQVPNVNMQHSV-- 286 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E-Ia~~~~i----p~~~ig~~rr~~v~s~G~qQRV-- 286 (701)
..++++++|+|+|||||||+++.|++.+.+. |.+|.+++.... .+....+ ...++. .+...+.++.+++
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~---~~~~~s~~~~~~v~~ 176 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADTFRAAAIEQLKIWGERVGAT---VISHSEGADPAAVAF 176 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHHHHHHHHHHTCE---EECCSTTCCHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEccccccHHHHHHHHHHHHHcCCc---EEecCCccCHHHHHH
Confidence 4567899999999999999999999999876 455666654311 0000000 000000 0111244666777
Q ss_pred -HHHHHHccCCCEEEEcCCCC
Q 005344 287 -MIEAVENHMPETIIIDEIGT 306 (701)
Q Consensus 287 -~IArAL~~~PdVIILDEPts 306 (701)
++++++..+|+++|+|||+.
T Consensus 177 ~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 177 DAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHhcCCCEEEEECCCc
Confidence 78888999999999999985
No 134
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.38 E-value=2.8e-07 Score=96.08 Aligned_cols=100 Identities=14% Similarity=0.188 Sum_probs=63.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCC-CC----CCCCCchhhhccCCChhHHHHHHHHH
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDG-DV----PHSGIGRARRMQVPNVNMQHSVMIEA 290 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~-~i----p~~~ig~~rr~~v~s~G~qQRV~IAr 290 (701)
+|++++|+|+|||||||+++.|++.+.+. |.+|.+++....-.... .+ ...++.....-...+...-++.+++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 78899999999999999999999999876 45577776532110000 00 00000000000001222345678888
Q ss_pred HHccCCCEEEEcCC-CCcccHHHHHHH
Q 005344 291 VENHMPETIIIDEI-GTELEALAASTI 316 (701)
Q Consensus 291 AL~~~PdVIILDEP-tsgLD~~a~~~l 316 (701)
++..++|+||+||| +.++|......+
T Consensus 176 ~~~~~~D~viiDtpp~~~~d~~~~~~l 202 (295)
T 1ls1_A 176 ARLEARDLILVDTAGRLQIDEPLMGEL 202 (295)
T ss_dssp HHHHTCCEEEEECCCCSSCCHHHHHHH
T ss_pred HHhCCCCEEEEeCCCCccccHHHHHHH
Confidence 87789999999999 778898666554
No 135
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.35 E-value=9.3e-07 Score=94.48 Aligned_cols=75 Identities=19% Similarity=0.105 Sum_probs=59.3
Q ss_pred cCCChhHHHHHH------HHHHHccC-CCEEEEcCCCCcccHHHHHHH----Hh--cCCEEEEEEcChhHHHHhcCcEEE
Q 005344 276 QVPNVNMQHSVM------IEAVENHM-PETIIIDEIGTELEALAASTI----AQ--RGVQLVGTAHGMTIDNIVKNPSLQ 342 (701)
Q Consensus 276 ~v~s~G~qQRV~------IArAL~~~-PdVIILDEPtsgLD~~a~~~l----~e--~GvtVIiTTHd~~l~~~l~drvlv 342 (701)
...|+|++++++ +++++..+ |++||+|||+++||+..+..+ .+ .+.+||+|||+.. +..+||+++.
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~~~~ 357 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADVIIN 357 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCEEEE
Confidence 357899999885 46777889 999999999999999998655 22 3469999999987 4678999988
Q ss_pred Ee-CCeEEEE
Q 005344 343 IL-VGGIESV 351 (701)
Q Consensus 343 l~-~G~I~~V 351 (701)
+. .|++..|
T Consensus 358 l~k~~~~s~v 367 (371)
T 3auy_A 358 VKKDGNVSKV 367 (371)
T ss_dssp EEESSSCEEE
T ss_pred EEecCCeEEE
Confidence 87 4554333
No 136
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.30 E-value=9.5e-07 Score=98.42 Aligned_cols=97 Identities=23% Similarity=0.339 Sum_probs=63.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCC
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPE 297 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~Pd 297 (701)
..++|+||||+|||||+|+|++... ..++.+.... + .. +.+...+.+.+.+++.+....|.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~----~~f~~is~~~-~------~~--------~~~g~~~~~~r~lf~~A~~~~p~ 110 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEAN----VPFFHISGSD-F------VE--------LFVGVGAARVRDLFAQAKAHAPC 110 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHT----CCEEEEEGGG-T------TT--------CCTTHHHHHHHHHHHHHHHTCSE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC----CCeeeCCHHH-H------HH--------HHhcccHHHHHHHHHHHHhcCCC
Confidence 4589999999999999999999652 2234443221 1 11 01222456778889999999999
Q ss_pred EEEEcCCCC----------cccHHHH---HHH--------HhcCCEEEEEEcChhHH
Q 005344 298 TIIIDEIGT----------ELEALAA---STI--------AQRGVQLVGTAHGMTID 333 (701)
Q Consensus 298 VIILDEPts----------gLD~~a~---~~l--------~e~GvtVIiTTHd~~l~ 333 (701)
+|++||+.. +.|.... ..+ ...++.||++||..+.+
T Consensus 111 ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 111 IVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp EEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred EEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 999999932 2332221 222 13578999999987654
No 137
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.28 E-value=6.5e-07 Score=98.25 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=80.4
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc---c-----ccCCCCCCC-----CCchh--------
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE---I-----GGDGDVPHS-----GIGRA-------- 272 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E---I-----a~~~~ip~~-----~ig~~-------- 272 (701)
+.+|++++|.|+||+|||||+..|++...+..|..|.++..... + +....++.. .+...
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a 279 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMA 279 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 78899999999999999999999999887655767787764311 0 000011100 01000
Q ss_pred ------hhc---cC--CChhHHHHHHHHHHH--ccCCCEEEEcCCCCccc--------HHHH-------HHH-HhcCCEE
Q 005344 273 ------RRM---QV--PNVNMQHSVMIEAVE--NHMPETIIIDEIGTELE--------ALAA-------STI-AQRGVQL 323 (701)
Q Consensus 273 ------rr~---~v--~s~G~qQRV~IArAL--~~~PdVIILDEPtsgLD--------~~a~-------~~l-~e~GvtV 323 (701)
..+ .. .+.++.+ ..++.+ .++|++||+|+++.-.. .... +.+ ++.|++|
T Consensus 280 ~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~v 357 (454)
T 2r6a_A 280 MGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPV 357 (454)
T ss_dssp HHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeE
Confidence 000 11 1333333 333444 37899999999986442 1111 122 3679999
Q ss_pred EEEEc---------C--hh--------HHHHhcCcEEEEeCCeE
Q 005344 324 VGTAH---------G--MT--------IDNIVKNPSLQILVGGI 348 (701)
Q Consensus 324 IiTTH---------d--~~--------l~~~l~drvlvl~~G~I 348 (701)
|+++| + .. .+...+|.++.+..+..
T Consensus 358 i~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 358 IALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp EEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred EEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 99999 2 11 45667888888776654
No 138
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.18 E-value=8.1e-08 Score=100.27 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=30.8
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCC--CCCCc
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLA--DDHMK 247 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLs--p~~Gk 247 (701)
.+|++++|+||||||||||+++|+|++. |+.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 6789999999999999999999999988 88887
No 139
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.17 E-value=9.7e-07 Score=98.56 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=38.9
Q ss_pred ceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 208 EIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 208 ~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
.+|+++ +.+ ++++|+|||||||||||++|+|++.|+.|. +.+++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~--I~~~g~ 65 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTL--LNFRNT 65 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTT--CCCCCT
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCE--EEECCE
Confidence 356666 788 999999999999999999999999999998 556654
No 140
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.17 E-value=2.8e-06 Score=91.37 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=35.1
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
+..|++++|+||||||||||+..++..+.+.. .+|+|++..
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~g-g~VlyId~E 98 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMG-GVAAFIDAE 98 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTT-CCEEEEESS
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEEecc
Confidence 67899999999999999999999999887654 457888765
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.16 E-value=2.5e-06 Score=89.11 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=64.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCC--CCCchhhhccCCChh-HHHHHHHHHHHccC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPH--SGIGRARRMQVPNVN-MQHSVMIEAVENHM 295 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~--~~ig~~rr~~v~s~G-~qQRV~IArAL~~~ 295 (701)
+++|.||+|+|||||++.+++.+.+..+..+++++..........+.. ..++......-.+.. ....+.-.......
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 899999999999999999999987653455677764321100000000 000000000000111 11111111112346
Q ss_pred CCEEEEcCCCCcccHHHHHHH-------Hh---cCCEEEEEEcChhHHHHh
Q 005344 296 PETIIIDEIGTELEALAASTI-------AQ---RGVQLVGTAHGMTIDNIV 336 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l-------~e---~GvtVIiTTHd~~l~~~l 336 (701)
|.+|++||+. .+|......+ .. .++.+|+++|+..+...+
T Consensus 126 ~~vlilDE~~-~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 126 YMFLVLDDAF-NLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp CEEEEEETGG-GSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred eEEEEEECcc-ccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 8899999997 4476666444 22 488999999988655443
No 142
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.15 E-value=2.9e-06 Score=92.15 Aligned_cols=68 Identities=9% Similarity=0.096 Sum_probs=57.2
Q ss_pred cCCChhHHHHHHHHHHHc----cCCCEEEEcCCCCcccHHHHHHH----Hh---cCCEEEEEEcChhHHHHhcCcEEEEe
Q 005344 276 QVPNVNMQHSVMIEAVEN----HMPETIIIDEIGTELEALAASTI----AQ---RGVQLVGTAHGMTIDNIVKNPSLQIL 344 (701)
Q Consensus 276 ~v~s~G~qQRV~IArAL~----~~PdVIILDEPtsgLD~~a~~~l----~e---~GvtVIiTTHd~~l~~~l~drvlvl~ 344 (701)
...|+|+|++++||++++ ..|+++|+|||+++||+..+..+ .+ .|.++|+|||+.... ..||+++.+.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~~~~ 410 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALVGVY 410 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEEEEE
Confidence 347899999999999999 57999999999999999988655 22 378999999997654 5799988776
No 143
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.15 E-value=1.4e-06 Score=82.70 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=31.9
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
+.+|++++|+||||||||||++.|++. ++.|. +++++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~--i~i~~d 43 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PGVPK--VHFHSD 43 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCE--EEECTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCe--EEEccc
Confidence 567999999999999999999999998 45555 666654
No 144
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.12 E-value=8.2e-07 Score=86.75 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=33.1
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
..+|++++|+||||||||||+++|+|++.+. |..+++|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~~~g~v~~ 58 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GLPAEVVPM 58 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TCCEEEEES
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCceEEEec
Confidence 3578999999999999999999999999875 544555554
No 145
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.08 E-value=1.6e-06 Score=83.09 Aligned_cols=29 Identities=31% Similarity=0.660 Sum_probs=26.1
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
+.+|++++|+||||||||||+++|+|+++
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45799999999999999999999999974
No 146
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.07 E-value=1.2e-06 Score=102.70 Aligned_cols=139 Identities=15% Similarity=0.093 Sum_probs=83.4
Q ss_pred eeccccccCCEEEEEcCCCCcHHHHHHHHHhcCCCCC--CcEEEEEcCCccccc---------CCCCCCCCCch------
Q 005344 209 IICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDH--MKRVVIVDTSNEIGG---------DGDVPHSGIGR------ 271 (701)
Q Consensus 209 ~L~dlI~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~--GkrViiVd~~~EIa~---------~~~ip~~~ig~------ 271 (701)
.+..++..|++++|+|||||||||++..++....... |.+++++....+.+. .+......+|.
T Consensus 101 ~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~ 180 (773)
T 2xau_A 101 EFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN 180 (773)
T ss_dssp HHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE
T ss_pred HHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc
Confidence 3444477889999999999999999998876544332 555555543322210 00000001110
Q ss_pred ----hhhccCCChhHHHHHHHHHHHccCCCEEEEcCCCC-cccHHHH----HHHHh--cC-CEEEEE-EcChhHHHHhcC
Q 005344 272 ----ARRMQVPNVNMQHSVMIEAVENHMPETIIIDEIGT-ELEALAA----STIAQ--RG-VQLVGT-AHGMTIDNIVKN 338 (701)
Q Consensus 272 ----~rr~~v~s~G~qQRV~IArAL~~~PdVIILDEPts-gLD~~a~----~~l~e--~G-vtVIiT-THd~~l~~~l~d 338 (701)
.....+.+.|+.++.+++..+..++++||+||+.. ++|.... ..+.. .+ ..++++ ||+.+....+.+
T Consensus 181 ~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 181 KTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp ECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred ccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 11223446799999999888899999999999995 8886544 22221 13 345553 688765555554
Q ss_pred -cEEEEeCCe
Q 005344 339 -PSLQILVGG 347 (701)
Q Consensus 339 -rvlvl~~G~ 347 (701)
..++...|+
T Consensus 261 ~~~vi~v~gr 270 (773)
T 2xau_A 261 DAPLLAVPGR 270 (773)
T ss_dssp SCCEEECCCC
T ss_pred CCCcccccCc
Confidence 334444554
No 147
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.04 E-value=1.5e-07 Score=99.93 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=43.7
Q ss_pred EEEEeEEEEECcccccccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc
Q 005344 190 MQVIGLTCRVGRAVAGSAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247 (701)
Q Consensus 190 IeI~nLs~rygr~v~G~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk 247 (701)
+++.+++++|+. ..+++++ +.+|++++|+|+||||||||++.|+|++.++.|+
T Consensus 30 ie~~~~~~~~~~-----~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~ 85 (337)
T 2qm8_A 30 AESRRADHRAAV-----RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHK 85 (337)
T ss_dssp HTCSSHHHHHHH-----HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HeeCCcccccCh-----HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCE
Confidence 456677777752 3567776 7889999999999999999999999999988776
No 148
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.01 E-value=2.7e-07 Score=93.44 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=41.2
Q ss_pred hccceEEEEeEEEEECcccccccceeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 185 IRNRKMQVIGLTCRVGRAVAGSAEIICDL-VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 185 ir~~~IeI~nLs~rygr~v~G~~~~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
++-..+++.|+...++. ++ +.+ ++++|+|||||||||||++|+|++.|+.|. +.+++
T Consensus 5 ~k~~~l~l~~~~~~~~~----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~--i~~~g 62 (227)
T 1qhl_A 5 GKFRSLTLINWNGFFAR----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTL--LHFRN 62 (227)
T ss_dssp CEEEEEEEEEETTEEEE----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTT--C----
T ss_pred ceeeEEEEEeeecccCC----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCe--EEECC
Confidence 34445777887665541 33 444 788999999999999999999999999887 44544
No 149
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.01 E-value=6.2e-06 Score=84.84 Aligned_cols=79 Identities=23% Similarity=0.355 Sum_probs=47.6
Q ss_pred eeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHH
Q 005344 209 IICDL-VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVM 287 (701)
Q Consensus 209 ~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~ 287 (701)
+++++ +.....++|+||||||||||+++|++.+.+ + .+.++...-. ....+. ....-+..
T Consensus 35 ~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~--~--~i~i~g~~l~-------~~~~~~--------~~~~i~~v 95 (274)
T 2x8a_A 35 QFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL--N--FISVKGPELL-------NMYVGE--------SERAVRQV 95 (274)
T ss_dssp HHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC--E--EEEEETTTTC-------SSTTHH--------HHHHHHHH
T ss_pred HHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC--C--EEEEEcHHHH-------hhhhhH--------HHHHHHHH
Confidence 44444 222233999999999999999999999865 2 3556553211 000111 00111233
Q ss_pred HHHHHccCCCEEEEcCCCC
Q 005344 288 IEAVENHMPETIIIDEIGT 306 (701)
Q Consensus 288 IArAL~~~PdVIILDEPts 306 (701)
+..+....|.++++||.-.
T Consensus 96 f~~a~~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 96 FQRAKNSAPCVIFFDEVDA 114 (274)
T ss_dssp HHHHHHTCSEEEEEETCTT
T ss_pred HHHHHhcCCCeEeeehhhh
Confidence 4444567899999999864
No 150
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.00 E-value=1.3e-05 Score=81.56 Aligned_cols=73 Identities=23% Similarity=0.367 Sum_probs=51.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
.+..++|.||||||||||++.|++.+. ..++.+...... . ..+...+...+..+..+....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~----~~~~~i~~~~l~-------~--------~~~~~~~~~~~~~~~~~~~~~ 113 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS----ATFLNISAASLT-------S--------KYVGDGEKLVRALFAVARHMQ 113 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT----CEEEEEESTTTS-------S--------SSCSCHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC----CCeEEeeHHHHh-------h--------cccchHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999763 334444432111 0 012234556677788888889
Q ss_pred CCEEEEcCCCCc
Q 005344 296 PETIIIDEIGTE 307 (701)
Q Consensus 296 PdVIILDEPtsg 307 (701)
|.+|++||+..-
T Consensus 114 ~~vl~iDEid~l 125 (297)
T 3b9p_A 114 PSIIFIDEVDSL 125 (297)
T ss_dssp SEEEEEETGGGT
T ss_pred CcEEEeccHHHh
Confidence 999999999654
No 151
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.00 E-value=1.7e-06 Score=94.76 Aligned_cols=108 Identities=15% Similarity=0.258 Sum_probs=63.6
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC-------CCcEEEEE-----------cCCcccccCCCCCCCCCchh---
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADD-------HMKRVVIV-----------DTSNEIGGDGDVPHSGIGRA--- 272 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~-------~GkrViiV-----------d~~~EIa~~~~ip~~~ig~~--- 272 (701)
+..++.++|+|+|||||||||+.|++....- ....+.++ |....+..... ...++..
T Consensus 154 lk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~--~~~L~~~fl~ 231 (416)
T 1udx_A 154 LMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE--GKGLGLEFLR 231 (416)
T ss_dssp ECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGG--SCCSCHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhh--hhhhhHHHHH
Confidence 6678999999999999999999999984210 01122222 22211100000 0011100
Q ss_pred ---------hhccC-------CChhHHHHHHHHHHHccCCCEEEEcCCCCcccHHHH---H----HHHhcCCEEEEEE
Q 005344 273 ---------RRMQV-------PNVNMQHSVMIEAVENHMPETIIIDEIGTELEALAA---S----TIAQRGVQLVGTA 327 (701)
Q Consensus 273 ---------rr~~v-------~s~G~qQRV~IArAL~~~PdVIILDEPtsgLD~~a~---~----~l~e~GvtVIiTT 327 (701)
..+++ .+.++++++.+++++...|.+|++ +.+|.... . .+.+.|.+++.+|
T Consensus 232 ~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 232 HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVS 305 (416)
T ss_dssp HHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECC
T ss_pred HHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEE
Confidence 00111 235889999999999999999998 67776422 1 2234577777665
No 152
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.95 E-value=1.3e-05 Score=90.06 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=38.3
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHh--cCCCCCC-cEEEEEcCCc-ccccCCCCCCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIAR--MLADDHM-KRVVIVDTSN-EIGGDGDVPHS 267 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaG--lLsp~~G-krViiVd~~~-EIa~~~~ip~~ 267 (701)
+.++.+++|.|++||||||+|+.|+. +.....+ -+++++|-.. ++.....+||.
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl 221 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHL 221 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTB
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcc
Confidence 56688999999999999999999886 3333333 4677777653 44444556664
No 153
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.94 E-value=3.1e-06 Score=83.64 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=20.3
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHH-hcCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIA-RMLA 242 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~Ia-GlLs 242 (701)
+.+|++++|+||||||||||+++|+ ++++
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 7889999999999999999999999 9974
No 154
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.94 E-value=3.7e-06 Score=80.65 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=26.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMK 247 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk 247 (701)
|++++|+||||||||||+++|+|++.+..|.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 4689999999999999999999999765443
No 155
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.92 E-value=3.4e-06 Score=82.18 Aligned_cols=28 Identities=29% Similarity=0.647 Sum_probs=23.9
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
.+|+.++|+||||||||||+++|+|++.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4688999999999999999999999875
No 156
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.92 E-value=2.3e-06 Score=88.71 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=30.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCC--CcEEEEEcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDH--MKRVVIVDT 254 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~--GkrViiVd~ 254 (701)
.+.+++|.||+|+|||||++.+++.+.+.. +..+++++.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 357899999999999999999999875443 445666653
No 157
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.89 E-value=1.8e-05 Score=79.94 Aligned_cols=72 Identities=31% Similarity=0.404 Sum_probs=46.9
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHcc
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
..+..++|.||+|+|||||++.|+..+. ..++.+....... ...+ ......+-.+..+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~----~~~~~v~~~~~~~-------~~~~--------~~~~~~~~~~~~~~~~ 109 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN----ATFIRVVGSELVK-------KFIG--------EGASLVKDIFKLAKEK 109 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT----CEEEEEEGGGGCC-------CSTT--------HHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC----CCEEEEehHHHHH-------hccc--------hHHHHHHHHHHHHHHc
Confidence 4567899999999999999999998763 3444444321110 0011 1112234455666778
Q ss_pred CCCEEEEcCCC
Q 005344 295 MPETIIIDEIG 305 (701)
Q Consensus 295 ~PdVIILDEPt 305 (701)
.|.+|++||+-
T Consensus 110 ~~~vl~iDEid 120 (285)
T 3h4m_A 110 APSIIFIDEID 120 (285)
T ss_dssp CSEEEEEETTH
T ss_pred CCeEEEEECHH
Confidence 89999999984
No 158
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.88 E-value=3.6e-06 Score=95.66 Aligned_cols=42 Identities=24% Similarity=0.487 Sum_probs=35.5
Q ss_pred ccceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc
Q 005344 206 SAEIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247 (701)
Q Consensus 206 ~~~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk 247 (701)
...+++.+ +..|+.++|+||||||||||+++|++++.+..+.
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~ 90 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLE 90 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCE
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCC
Confidence 44566666 8899999999999999999999999999876533
No 159
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.88 E-value=4e-06 Score=81.20 Aligned_cols=41 Identities=34% Similarity=0.411 Sum_probs=34.3
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
..+|++++|+|||||||||+++.|++.+. ..|..++++++.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d 62 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGD 62 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCc
Confidence 56799999999999999999999999987 567644567654
No 160
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.88 E-value=1.8e-05 Score=81.84 Aligned_cols=73 Identities=19% Similarity=0.342 Sum_probs=47.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~ 293 (701)
+..+..++|.||||||||||+++|++.+. ..++.++....... . +.......+..+..+..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~----~~~i~v~~~~l~~~-------------~--~g~~~~~~~~~f~~a~~ 106 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKGPELLTM-------------W--FGESEANVREIFDKARQ 106 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT----CEEEEECHHHHHHH-------------H--HTTCTTHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC----CCEEEEEhHHHHhh-------------h--cCchHHHHHHHHHHHHh
Confidence 45678999999999999999999999863 33444443211100 0 00111223445666777
Q ss_pred cCCCEEEEcCCC
Q 005344 294 HMPETIIIDEIG 305 (701)
Q Consensus 294 ~~PdVIILDEPt 305 (701)
..|.+|++||+-
T Consensus 107 ~~p~il~iDEid 118 (301)
T 3cf0_A 107 AAPCVLFFDELD 118 (301)
T ss_dssp TCSEEEEECSTT
T ss_pred cCCeEEEEEChH
Confidence 889999999985
No 161
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.87 E-value=6.1e-06 Score=79.00 Aligned_cols=31 Identities=35% Similarity=0.462 Sum_probs=27.5
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADD 244 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~ 244 (701)
+.+|++++|+|||||||||+++.|++.+.++
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 4578999999999999999999999998654
No 162
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.85 E-value=3.2e-06 Score=86.53 Aligned_cols=50 Identities=28% Similarity=0.369 Sum_probs=32.4
Q ss_pred eEEEEeE-EEEECcccccccceeccc---ccc---CCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 189 KMQVIGL-TCRVGRAVAGSAEIICDL---VEG---GGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 189 ~IeI~nL-s~rygr~v~G~~~~L~dl---I~~---GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
++++.+| +++|+ +...+|+++ +.+ |++++|+|++||||||+++.|++.+.
T Consensus 17 ~l~~~~~~~~~~~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 17 LLETGSLLHSPFD----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEcceeeEEec----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999 99993 234688888 778 99999999999999999999999763
No 163
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.85 E-value=4.5e-06 Score=91.52 Aligned_cols=99 Identities=15% Similarity=0.248 Sum_probs=58.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCC-CCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADD-HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~-~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
+..++|.||+|+|||||+++|++.+... .+..+++++...... .+ ...+. ... ...+...+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~--------~~--~~~~~--~~~---~~~~~~~~~~~ 194 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN--------DL--VDSMK--EGK---LNEFREKYRKK 194 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH--------HH--HHHHH--TTC---HHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH--------HH--HHHHH--ccc---HHHHHHHhcCC
Confidence 4589999999999999999999987432 244556655321100 00 00000 000 11222333348
Q ss_pred CCEEEEcCCCCcccH-HHHH-------HHHhcCCEEEEEEcCh
Q 005344 296 PETIIIDEIGTELEA-LAAS-------TIAQRGVQLVGTAHGM 330 (701)
Q Consensus 296 PdVIILDEPtsgLD~-~a~~-------~l~e~GvtVIiTTHd~ 330 (701)
|++|++||+..-.+. ..+. .+.+.|..+|+++|..
T Consensus 195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 195 VDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp CSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 999999999754431 2222 2256789999999873
No 164
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.84 E-value=2.2e-05 Score=92.47 Aligned_cols=106 Identities=23% Similarity=0.310 Sum_probs=65.7
Q ss_pred eeccc-cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHH
Q 005344 209 IICDL-VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVM 287 (701)
Q Consensus 209 ~L~dl-I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~ 287 (701)
+++++ +..++.++|+||||||||||+++|++.+. ..++.++.. ++.. .. ......+-+..
T Consensus 229 ~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~----~~~i~v~~~-~l~~------~~--------~g~~~~~l~~v 289 (806)
T 1ypw_A 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGP-EIMS------KL--------AGESESNLRKA 289 (806)
T ss_dssp GGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT----CEEEEEEHH-HHSS------SS--------TTHHHHHHHHH
T ss_pred HHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC----CcEEEEEch-Hhhh------hh--------hhhHHHHHHHH
Confidence 34444 67889999999999999999999999874 334445432 1110 00 01112233455
Q ss_pred HHHHHccCCCEEEEcCCCCcc----------cHHHHHHH--------HhcCCEEEEEEcChhHH
Q 005344 288 IEAVENHMPETIIIDEIGTEL----------EALAASTI--------AQRGVQLVGTAHGMTID 333 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgL----------D~~a~~~l--------~e~GvtVIiTTHd~~l~ 333 (701)
+..+....|.+|++||+-..+ +......+ ...++.+|+++|..+.+
T Consensus 290 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred HHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 666777889999999993221 12222222 12367888899886543
No 165
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.79 E-value=3.4e-06 Score=92.88 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=33.8
Q ss_pred EEEeEEEEECcccccccceeccc---cccCCE--EEEEcCCCCcHHHHHHHHHhcC
Q 005344 191 QVIGLTCRVGRAVAGSAEIICDL---VEGGGS--ILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 191 eI~nLs~rygr~v~G~~~~L~dl---I~~Gei--ilIIGPNGSGKTTLLR~IaGlL 241 (701)
++.+ ++.|+. .. ++++ +.+|++ ++|+|||||||||||++|+|+.
T Consensus 18 ~~~~-~~~y~~-----~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 18 PLAG-HVGFDS-----LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CCCC-CC-CC-------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEee-EEEECC-----ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3445 667762 23 7777 899999 9999999999999999999985
No 166
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.78 E-value=6e-05 Score=76.06 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=62.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCC-CCCCCchhhhccCCChhHHHHHHHHHHHc
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDV-PHSGIGRARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~i-p~~~ig~~rr~~v~s~G~qQRV~IArAL~ 293 (701)
.+|.++++.|++|+||||++..++..+. ..|.+|.++.....-.+...+ .+.++.. ..+.+.... -.+..+..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~-~~g~kVli~~~~~d~r~~~~i~srlG~~~-~~~~~~~~~----~i~~~i~~ 83 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE-YADVKYLVFKPKIDTRSIRNIQSRTGTSL-PSVEVESAP----EILNYIMS 83 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCCGGGCSSCCCCCCCSS-CCEEESSTH----HHHHHHHS
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEEeccCchHHHHHHHhcCCCc-cccccCCHH----HHHHHHHH
Confidence 4688999999999999998877766554 346777777321110011111 1222111 011122211 12222222
Q ss_pred ----cCCCEEEEcCCCCcccHHH---HHHHHhcCCEEEEEEcChhH
Q 005344 294 ----HMPETIIIDEIGTELEALA---ASTIAQRGVQLVGTAHGMTI 332 (701)
Q Consensus 294 ----~~PdVIILDEPtsgLD~~a---~~~l~e~GvtVIiTTHd~~l 332 (701)
..+++|++||.-. ++... ...+++.|+.||++.|+.++
T Consensus 84 ~~~~~~~dvViIDEaQ~-l~~~~ve~l~~L~~~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQF-FDDRICEVANILAENGFVVIISGLDKNF 128 (223)
T ss_dssp TTSCTTCCEEEECSGGG-SCTHHHHHHHHHHHTTCEEEEECCSBCT
T ss_pred HhhCCCCCEEEEecCcc-CcHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 3599999999963 54433 24456779999999996543
No 167
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.77 E-value=1.2e-05 Score=76.73 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=25.8
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLAD 243 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp 243 (701)
.|++++|+||||||||||++.|++.+.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 5789999999999999999999998863
No 168
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.76 E-value=1.4e-05 Score=88.04 Aligned_cols=95 Identities=19% Similarity=0.113 Sum_probs=57.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccccc----------CCCCCCCCCchhhhccCCChhHHHH
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGG----------DGDVPHSGIGRARRMQVPNVNMQHS 285 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~----------~~~ip~~~ig~~rr~~v~s~G~qQR 285 (701)
++.+++++|+|||||||++..|++.+... |.+|.+++....-.. ...++..... ...+...-.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~-----~~~dp~~i~~ 169 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR-GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEP-----NNQNPIEIAK 169 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCT-----TCSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecCccchhHHHHHHHHHHhcCCceeecc-----ccCCHHHHHH
Confidence 46799999999999999999999999865 667877764321100 0011110000 0011111122
Q ss_pred HHHHHHHccCCCEEEEcCCCC-c--ccHHHHHHH
Q 005344 286 VMIEAVENHMPETIIIDEIGT-E--LEALAASTI 316 (701)
Q Consensus 286 V~IArAL~~~PdVIILDEPts-g--LD~~a~~~l 316 (701)
-+++.+...++|++|+|+|+. . .|.....++
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el 203 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEM 203 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCCccccCCHHHHHHH
Confidence 345555567999999999984 4 565554433
No 169
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.74 E-value=2.7e-05 Score=73.51 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=28.2
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk 247 (701)
+.+| +++|+||||||||||+++|.+++.+..+.
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 4556 99999999999999999999998765543
No 170
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.73 E-value=1.7e-05 Score=80.58 Aligned_cols=105 Identities=17% Similarity=0.236 Sum_probs=58.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc----cccc-CCCCCCCCCchhhhccCCChhHHHHHHHHHHHc
Q 005344 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN----EIGG-DGDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~----EIa~-~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~ 293 (701)
++.+.|++|+||||++-.++..+.. .|.+|.+++-.. +... ...++...... ... .........+..++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~-~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~---~~~-~~~~~~e~~l~~~L~ 82 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR-QGVRVMAGVVETHGRAETEALLNGLPQQPLLR---TEY-RGMTLEEMDLDALLK 82 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCTTCHHHHHHHTTSCBCCCEE---EEE-TTEEEEECCHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-CCCCEEEEEeCCCCChhHHHHhcCccccCcce---eec-CCcccccccHHHHHh
Confidence 5789999999999997777766653 466666555432 1111 11111110000 000 000000112334455
Q ss_pred cCCCEEEEcCCCCc-c-------cHHHHHHHHhcCCEEEEEEc
Q 005344 294 HMPETIIIDEIGTE-L-------EALAASTIAQRGVQLVGTAH 328 (701)
Q Consensus 294 ~~PdVIILDEPtsg-L-------D~~a~~~l~e~GvtVIiTTH 328 (701)
..|+++|+||++.. . -......+.+.|+.+|.|+|
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 78999999999852 1 12222345678999999997
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.73 E-value=3.1e-05 Score=74.87 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=30.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
.+..++|.||+|+|||||++.++..+... |..+.+++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~ 88 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPL 88 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEH
Confidence 46899999999999999999999887543 455666654
No 172
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=6.7e-05 Score=82.83 Aligned_cols=73 Identities=26% Similarity=0.450 Sum_probs=50.2
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~ 293 (701)
+.....++|.||||||||+|.++||+.+. ..++.+....-.. ..+| .....-+..+..|..
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~----~~~~~v~~s~l~s-------k~~G--------ese~~ir~~F~~A~~ 272 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG----ANFIFSPASGIVD-------KYIG--------ESARIIREMFAYAKE 272 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT----CEEEEEEGGGTCC-------SSSS--------HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC----CCEEEEehhhhcc-------ccch--------HHHHHHHHHHHHHHh
Confidence 33457899999999999999999999753 4455555432111 1111 112234567778888
Q ss_pred cCCCEEEEcCCC
Q 005344 294 HMPETIIIDEIG 305 (701)
Q Consensus 294 ~~PdVIILDEPt 305 (701)
+.|.||++||+-
T Consensus 273 ~~P~IifiDEiD 284 (437)
T 4b4t_L 273 HEPCIIFMDEVD 284 (437)
T ss_dssp SCSEEEEEECCC
T ss_pred cCCceeeeeccc
Confidence 999999999993
No 173
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.73 E-value=1.3e-05 Score=83.31 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=29.1
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk 247 (701)
+..|++++|+||||||||||||+|+|++.|+.|.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~ 199 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSE 199 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC---
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccccc
Confidence 4468999999999999999999999999999887
No 174
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.72 E-value=2.7e-05 Score=82.29 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=35.0
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
+.++++++|+|+|||||||++..|++.+.+. |.+|.+++..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~D 142 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAAD 142 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 5678999999999999999999999999876 5567777654
No 175
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.72 E-value=2.2e-05 Score=78.36 Aligned_cols=23 Identities=52% Similarity=0.933 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhcCC
Q 005344 220 ILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 220 ilIIGPNGSGKTTLLR~IaGlLs 242 (701)
++|+||||||||||+++|++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999875
No 176
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.72 E-value=5.7e-05 Score=80.09 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=34.9
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcC--CCC---CCcEEEEEcCCc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARML--ADD---HMKRVVIVDTSN 256 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlL--sp~---~GkrViiVd~~~ 256 (701)
+..|+++.|.||||||||||+..++... +.. .|.+++|++...
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 7789999999999999999999999853 221 356788998754
No 177
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.71 E-value=1.7e-05 Score=76.84 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=29.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
.+|++++|+||||||||||++.|++.+ |. +++++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~--~~i~~d 61 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET----GL--EFAEAD 61 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH----CC--EEEEGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh----CC--eEEccc
Confidence 468999999999999999999999987 44 556553
No 178
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.70 E-value=4.7e-05 Score=79.83 Aligned_cols=118 Identities=15% Similarity=0.142 Sum_probs=65.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCC-CC----CCcEEEEEcCCcccccC---CCCCCCCCchh---hhc---cCCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLA-DD----HMKRVVIVDTSNEIGGD---GDVPHSGIGRA---RRM---QVPN 279 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLs-p~----~GkrViiVd~~~EIa~~---~~ip~~~ig~~---rr~---~v~s 279 (701)
+..|+++.|.||||||||||+..++.... +. .|.+++|++........ ......++... .++ ...+
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 78899999999999999999999987642 21 14678888875321000 00000111110 011 1112
Q ss_pred hhH-HHHHHHHHHHc---cCCCEEEEcCCCCcccH--------HH----H----HHH----HhcCCEEEEEEcChh
Q 005344 280 VNM-QHSVMIEAVEN---HMPETIIIDEIGTELEA--------LA----A----STI----AQRGVQLVGTAHGMT 331 (701)
Q Consensus 280 ~G~-qQRV~IArAL~---~~PdVIILDEPtsgLD~--------~a----~----~~l----~e~GvtVIiTTHd~~ 331 (701)
... .+.+..+..+. ..|++||+|+++.-... .. . ..+ .+.|++||++.|-..
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence 221 12233333333 68999999999864321 11 1 111 456999999998543
No 179
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.70 E-value=2.2e-05 Score=79.77 Aligned_cols=23 Identities=52% Similarity=0.933 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhcCC
Q 005344 220 ILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 220 ilIIGPNGSGKTTLLR~IaGlLs 242 (701)
++|+||||||||||+++|++.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 89999999999999999999885
No 180
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=5.6e-05 Score=82.72 Aligned_cols=72 Identities=26% Similarity=0.416 Sum_probs=49.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHcc
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
.....++|.||||||||+|.++||+.. |..++.+....-.. ..+| .....-|-++..|..+
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~----~~~f~~v~~s~l~s-------k~vG--------ese~~vr~lF~~Ar~~ 240 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT----DCKFIRVSGAELVQ-------KYIG--------EGSRMVRELFVMAREH 240 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH----TCEEEEEEGGGGSC-------SSTT--------HHHHHHHHHHHHHHHT
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh----CCCceEEEhHHhhc-------cccc--------hHHHHHHHHHHHHHHh
Confidence 344678999999999999999999975 34455555442211 1111 1122335667788889
Q ss_pred CCCEEEEcCCC
Q 005344 295 MPETIIIDEIG 305 (701)
Q Consensus 295 ~PdVIILDEPt 305 (701)
.|.+|++||+-
T Consensus 241 aP~IIFiDEiD 251 (405)
T 4b4t_J 241 APSIIFMDEID 251 (405)
T ss_dssp CSEEEEEESSS
T ss_pred CCceEeeecch
Confidence 99999999984
No 181
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.68 E-value=1.8e-05 Score=75.41 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
|++++|+||||||||||++.|++ +..|. +++++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~--~~i~~ 34 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNS--AYIEG 34 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSE--EEEEH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCe--EEEcc
Confidence 57899999999999999999998 33454 45554
No 182
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=8.2e-05 Score=81.93 Aligned_cols=71 Identities=25% Similarity=0.419 Sum_probs=48.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHcc
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
.....++|.||||||||+|.++||+.+ |..++.+....-.. ..+|. ....-+-++..|..+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~----~~~~~~v~~~~l~~-------~~~Ge--------~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST----KAAFIRVNGSEFVH-------KYLGE--------GPRMVRDVFRLAREN 264 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH----TCEEEEEEGGGTCC-------SSCSH--------HHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEecchhhc-------cccch--------hHHHHHHHHHHHHHc
Confidence 344679999999999999999999976 34455555432111 11111 112335567778889
Q ss_pred CCCEEEEcCC
Q 005344 295 MPETIIIDEI 304 (701)
Q Consensus 295 ~PdVIILDEP 304 (701)
.|-+|++||.
T Consensus 265 aP~IifiDEi 274 (428)
T 4b4t_K 265 APSIIFIDEV 274 (428)
T ss_dssp CSEEEEEECT
T ss_pred CCCeeechhh
Confidence 9999999998
No 183
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.63 E-value=0.00011 Score=73.50 Aligned_cols=68 Identities=31% Similarity=0.435 Sum_probs=43.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCC
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPE 297 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~Pd 297 (701)
..++|+||||||||||+++|++.+. ..++.++...-. ....+ ....+-+..+..+....|.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~----~~~~~i~~~~~~-------~~~~~--------~~~~~~~~~~~~a~~~~~~ 106 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAK----VPFFTISGSDFV-------EMFVG--------VGASRVRDMFEQAKKAAPC 106 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT----CCEEEECSCSST-------TSCCC--------CCHHHHHHHHHHHHTTCSE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC----CCEEEEeHHHHH-------HHhhh--------hhHHHHHHHHHHHHHcCCe
Confidence 4589999999999999999999863 224555543211 10011 1111223445556667789
Q ss_pred EEEEcCC
Q 005344 298 TIIIDEI 304 (701)
Q Consensus 298 VIILDEP 304 (701)
++++||+
T Consensus 107 il~iDei 113 (257)
T 1lv7_A 107 IIFIDEI 113 (257)
T ss_dssp EEEETTH
T ss_pred eehhhhh
Confidence 9999997
No 184
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.63 E-value=5.1e-05 Score=81.12 Aligned_cols=114 Identities=10% Similarity=0.074 Sum_probs=73.5
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---ccccCCCCCCCCCchh-hhccCCChhHHHHHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---EIGGDGDVPHSGIGRA-RRMQVPNVNMQHSVMIE 289 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---EIa~~~~ip~~~ig~~-rr~~v~s~G~qQRV~IA 289 (701)
+.+|+.++|.|+||+|||||+..++..... .|..|.++...- ++...-.-...++... -+....+.++.+++..|
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a 121 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKC 121 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHH
Confidence 678999999999999999999999887654 567777775431 1100000000011111 11233566788899988
Q ss_pred HHHccCCCEEEEcCCCCcccHHHH--HHH-Hhc-CCEEEEEEc
Q 005344 290 AVENHMPETIIIDEIGTELEALAA--STI-AQR-GVQLVGTAH 328 (701)
Q Consensus 290 rAL~~~PdVIILDEPtsgLD~~a~--~~l-~e~-GvtVIiTTH 328 (701)
.....+++++|.|+|+..++-... +.+ .+. |+.+|++-|
T Consensus 122 ~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 122 FDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 888888999999999765553321 333 344 788888865
No 185
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.63 E-value=0.0001 Score=79.07 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=64.1
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhh--hccCCChhHHHHHHHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRAR--RMQVPNVNMQHSVMIEAV 291 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~r--r~~v~s~G~qQRV~IArA 291 (701)
+..|.+++|.|+||||||||+..++..... .|.+|+|++...-.... .....++.... ..+..+ . .+...++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~-~g~~vlyid~E~s~~~~-~a~~~g~~~~~l~i~~~~~-~-e~~~~~~~~ 135 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPI-YARKLGVDIDNLLCSQPDT-G-EQALEICDA 135 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSS-H-HHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCCccHH-HHHHcCCChhheeeeCCCC-H-HHHHHHHHH
Confidence 568899999999999999999988876543 35568888874211000 00000111000 001111 1 222223333
Q ss_pred H--ccCCCEEEEcCCCCccc--------------HHHH------HHH----HhcCCEEEEEEcCh
Q 005344 292 E--NHMPETIIIDEIGTELE--------------ALAA------STI----AQRGVQLVGTAHGM 330 (701)
Q Consensus 292 L--~~~PdVIILDEPtsgLD--------------~~a~------~~l----~e~GvtVIiTTHd~ 330 (701)
+ ...+++||+|.++.-.. ..++ ..+ ++.|++||++.|-.
T Consensus 136 l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred HHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 3 47899999999975331 1111 112 56799999999843
No 186
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.63 E-value=1.6e-05 Score=79.46 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=28.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHH---hcCCCCCCc
Q 005344 216 GGGSILVIGPPGVGKTTLIREIA---RMLADDHMK 247 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~Ia---GlLsp~~Gk 247 (701)
++++++|+||||||||||++.|+ |+..++.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~ 60 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGH 60 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHH
Confidence 46899999999999999999999 888776554
No 187
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.62 E-value=2.8e-05 Score=80.55 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=29.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
+..++|.||+|+|||||++.|++.+... +..+++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEH
Confidence 4589999999999999999999987544 455666653
No 188
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.61 E-value=3.2e-05 Score=75.63 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=26.8
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCC
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLAD 243 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp 243 (701)
.+|++++|+||||||||||++.|++.+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 46899999999999999999999999875
No 189
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.60 E-value=2.9e-05 Score=79.07 Aligned_cols=35 Identities=43% Similarity=0.738 Sum_probs=28.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEc
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVD 253 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd 253 (701)
..++|.||||+||||+++.|++.+....+. ++.++
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~-~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEA-MIRID 82 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGG-EEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcc-eEEee
Confidence 589999999999999999999998665443 44444
No 190
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.59 E-value=0.00015 Score=76.11 Aligned_cols=72 Identities=25% Similarity=0.416 Sum_probs=47.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
....++|.||+|||||||++.++..+. +..++.+....... ...+ .....-+-.+..+....
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~~i~~~~l~~-------~~~g--------~~~~~~~~lf~~a~~~~ 105 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSSDLVS-------KWLG--------ESEKLVKNLFQLARENK 105 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT---SCEEEEEECCSSCC-------SSCC--------SCHHHHHHHHHHHHHTS
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcC---CCcEEEEEhHHHHh-------hhhh--------HHHHHHHHHHHHHHhcC
Confidence 446899999999999999999999862 34455555432111 0011 11122344455666788
Q ss_pred CCEEEEcCCC
Q 005344 296 PETIIIDEIG 305 (701)
Q Consensus 296 PdVIILDEPt 305 (701)
|.+|++||+-
T Consensus 106 ~~vl~iDEid 115 (322)
T 1xwi_A 106 PSIIFIDEID 115 (322)
T ss_dssp SEEEEEETTT
T ss_pred CcEEEeecHH
Confidence 9999999995
No 191
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.58 E-value=0.00011 Score=72.72 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=44.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
....++|.||+|+|||||++.|+..+. ..++.++...... . ..+ ......+-.+..+....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~----~~~~~~~~~~~~~------~-~~~--------~~~~~~~~~~~~a~~~~ 98 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ----VPFLAMAGAEFVE------V-IGG--------LGAARVRSLFKEARARA 98 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT----CCEEEEETTTTSS------S-STT--------HHHHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEechHHHHh------h-ccC--------hhHHHHHHHHHHHHhcC
Confidence 346789999999999999999998753 3345554432110 0 000 01122234555666678
Q ss_pred CCEEEEcCCCC
Q 005344 296 PETIIIDEIGT 306 (701)
Q Consensus 296 PdVIILDEPts 306 (701)
|.+|++||+-.
T Consensus 99 ~~vl~iDeid~ 109 (262)
T 2qz4_A 99 PCIVYIDEIDA 109 (262)
T ss_dssp SEEEEEECC--
T ss_pred CeEEEEeCcch
Confidence 99999999863
No 192
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.58 E-value=0.00019 Score=76.07 Aligned_cols=70 Identities=27% Similarity=0.370 Sum_probs=46.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
....++|.||+|+|||||++.|+..+ +..++.++...... ...+ ......+..+..+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~----~~~~~~i~~~~l~~-------~~~g--------~~~~~~~~~~~~a~~~~ 176 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS----GATFFSISASSLTS-------KWVG--------EGEKMVRALFAVARCQQ 176 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT----TCEEEEEEGGGGCC-------SSTT--------HHHHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc----CCeEEEEehHHhhc-------cccc--------hHHHHHHHHHHHHHhcC
Confidence 34689999999999999999999876 34445554431110 0011 11223345566666788
Q ss_pred CCEEEEcCC
Q 005344 296 PETIIIDEI 304 (701)
Q Consensus 296 PdVIILDEP 304 (701)
|.+|++||+
T Consensus 177 ~~vl~iDEi 185 (357)
T 3d8b_A 177 PAVIFIDEI 185 (357)
T ss_dssp SEEEEEETH
T ss_pred CeEEEEeCc
Confidence 999999998
No 193
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00011 Score=81.60 Aligned_cols=73 Identities=26% Similarity=0.352 Sum_probs=50.6
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~ 293 (701)
+.....++|.||||||||+|.++||+.+. ..++.+....-+ ...+| .....-|..+..|..
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~----~~fi~vs~s~L~-------sk~vG--------esek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTD----ATFIRVIGSELV-------QKYVG--------EGARMVRELFEMART 300 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHT----CEEEEEEGGGGC-------CCSSS--------HHHHHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccC----CCeEEEEhHHhh-------cccCC--------HHHHHHHHHHHHHHh
Confidence 34557899999999999999999999763 444555543211 11111 122234667778888
Q ss_pred cCCCEEEEcCCC
Q 005344 294 HMPETIIIDEIG 305 (701)
Q Consensus 294 ~~PdVIILDEPt 305 (701)
+.|-||++||+-
T Consensus 301 ~aP~IIfiDEiD 312 (467)
T 4b4t_H 301 KKACIIFFDEID 312 (467)
T ss_dssp TCSEEEEEECCT
T ss_pred cCCceEeecccc
Confidence 999999999994
No 194
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00012 Score=80.82 Aligned_cols=73 Identities=22% Similarity=0.384 Sum_probs=50.1
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~ 293 (701)
+.....++|.||||||||+|.++||+.+. ..++.+....-. ...+| .....-|..+..|..
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~----~~fi~v~~s~l~-------sk~vG--------esek~ir~lF~~Ar~ 273 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTS----ATFLRIVGSELI-------QKYLG--------DGPRLCRQIFKVAGE 273 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHT----CEEEEEESGGGC-------CSSSS--------HHHHHHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhC----CCEEEEEHHHhh-------hccCc--------hHHHHHHHHHHHHHh
Confidence 33456899999999999999999999753 445555543211 11111 122234667778888
Q ss_pred cCCCEEEEcCCC
Q 005344 294 HMPETIIIDEIG 305 (701)
Q Consensus 294 ~~PdVIILDEPt 305 (701)
+.|.||++||+-
T Consensus 274 ~aP~IIfiDEiD 285 (437)
T 4b4t_I 274 NAPSIVFIDEID 285 (437)
T ss_dssp TCSEEEEEEEES
T ss_pred cCCcEEEEehhh
Confidence 999999999973
No 195
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.53 E-value=3.8e-05 Score=82.75 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=30.2
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCC-CCCCc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLA-DDHMK 247 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLs-p~~Gk 247 (701)
..+|++++|+||||||||||+++|+|.+. +..|.
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~ 246 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLGLQNEILTND 246 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhccccccccCC
Confidence 45799999999999999999999999998 87664
No 196
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.51 E-value=4e-05 Score=71.45 Aligned_cols=27 Identities=37% Similarity=0.683 Sum_probs=24.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
.+.+++|+|+|||||||+++.|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999999875
No 197
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.51 E-value=0.00032 Score=74.85 Aligned_cols=116 Identities=13% Similarity=0.149 Sum_probs=63.8
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHH-hcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhc-cCCChhHHHHHHHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIA-RMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRM-QVPNVNMQHSVMIEAV 291 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~Ia-GlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~-~v~s~G~qQRV~IArA 291 (701)
+..| ++.|.||+|+|||||+-.++ .......|.+++||+........ .....++.....+ -.+..+++..+.++..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 5677 89999999999999955544 43332236778999876432100 0001111111000 0122244442334434
Q ss_pred H----ccCCCEEEEcCCCCcc----------c------HHHH------H----HHHhcCCEEEEEEcChh
Q 005344 292 E----NHMPETIIIDEIGTEL----------E------ALAA------S----TIAQRGVQLVGTAHGMT 331 (701)
Q Consensus 292 L----~~~PdVIILDEPtsgL----------D------~~a~------~----~l~e~GvtVIiTTHd~~ 331 (701)
+ ...|++||+|-+.+-. | ..++ + .+++.|+++|+|-|-..
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 3 3579999999987532 1 1111 1 12567999999999544
No 198
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.51 E-value=0.00017 Score=66.38 Aligned_cols=27 Identities=33% Similarity=0.657 Sum_probs=23.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
.+..++|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998764
No 199
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.51 E-value=1.9e-05 Score=83.28 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=24.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk 247 (701)
+.+|++++|+||||||||||+++|+|++.+..|.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~ 203 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNE 203 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC--------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccc
Confidence 5579999999999999999999999999888776
No 200
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.50 E-value=3.5e-05 Score=87.37 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=37.3
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE 257 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E 257 (701)
+.+|++++|+|+||||||||+++|++.+.+..|..+.++++...
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 56899999999999999999999999998887755566777543
No 201
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.49 E-value=5e-05 Score=79.23 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=30.0
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMK 247 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~Gk 247 (701)
+..|++++|+||||||||||+|+|+ ++.+..|.
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~ 194 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQE 194 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccc
Confidence 4468999999999999999999999 99888886
No 202
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.47 E-value=3e-05 Score=78.42 Aligned_cols=35 Identities=31% Similarity=0.319 Sum_probs=26.8
Q ss_pred eccccccCCEEEEEcCCCCcHHHHHHHHH---hcCCCC
Q 005344 210 ICDLVEGGGSILVIGPPGVGKTTLIREIA---RMLADD 244 (701)
Q Consensus 210 L~dlI~~GeiilIIGPNGSGKTTLLR~Ia---GlLsp~ 244 (701)
+.....+|.+++|+|||||||||+++.|+ |+..++
T Consensus 20 ~~~m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 20 RPHMTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp ---CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 33445678999999999999999999999 554433
No 203
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.46 E-value=3.2e-05 Score=87.03 Aligned_cols=29 Identities=45% Similarity=0.787 Sum_probs=26.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADD 244 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~ 244 (701)
+|.+++|+||||||||||+++|++.+.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 68999999999999999999999998654
No 204
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.45 E-value=5.4e-05 Score=73.49 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=31.4
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEE
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiV 252 (701)
..+|.+++|+|+||||||||++.|++.+.+.+|. |.++
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~-v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGIS-VCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCC-EEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCe-EEEe
Confidence 3567899999999999999999999999776565 3343
No 205
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.45 E-value=0.00027 Score=74.96 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=59.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCC-------CcEEEEEcCCc-ccccCCCCCCCCCchhhhccCCChhHHHHHH
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDH-------MKRVVIVDTSN-EIGGDGDVPHSGIGRARRMQVPNVNMQHSVM 287 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~-------GkrViiVd~~~-EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~ 287 (701)
..-.++|+|+||+|||||++.|++...... +..+..+.... .+.. -+.| +... ......+.++++.+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l-~Dt~--G~~~-~~~~~~~~~~~~~~~ 241 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQI-IDTP--GLLD-RPISERNEIEKQAIL 241 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEE-EECT--TTSS-SCSTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEE-EeCC--Cccc-cchhhhhHHHHHHHH
Confidence 345889999999999999999998653110 11111111110 0000 0000 0000 011122345555443
Q ss_pred HHHHHccCCCEEEEc-CCCCcccHHHHHHH----Hh--cCCEEEEEE--cChh
Q 005344 288 IEAVENHMPETIIID-EIGTELEALAASTI----AQ--RGVQLVGTA--HGMT 331 (701)
Q Consensus 288 IArAL~~~PdVIILD-EPtsgLD~~a~~~l----~e--~GvtVIiTT--Hd~~ 331 (701)
+.+...++-++++| +++.++|......+ .. .+..+|++. ||..
T Consensus 242 -~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 242 -ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp -GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred -HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 33333566678999 99888887765333 22 277888887 7753
No 206
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00015 Score=79.88 Aligned_cols=71 Identities=25% Similarity=0.352 Sum_probs=49.1
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHcc
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
.....++|.||||||||+|.++||+.+. ..++.+....-. ...+| .....-|.++..|..+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~----~~f~~v~~s~l~-------~~~vG--------ese~~ir~lF~~A~~~ 273 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTN----ATFLKLAAPQLV-------QMYIG--------EGAKLVRDAFALAKEK 273 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT----CEEEEEEGGGGC-------SSCSS--------HHHHHHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhC----CCEEEEehhhhh-------hcccc--------hHHHHHHHHHHHHHhc
Confidence 3456899999999999999999999753 445555543211 11111 1223346677778889
Q ss_pred CCCEEEEcCC
Q 005344 295 MPETIIIDEI 304 (701)
Q Consensus 295 ~PdVIILDEP 304 (701)
.|.||++||+
T Consensus 274 aP~IifiDEi 283 (434)
T 4b4t_M 274 APTIIFIDEL 283 (434)
T ss_dssp CSEEEEEECT
T ss_pred CCeEEeecch
Confidence 9999999997
No 207
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.44 E-value=5e-05 Score=71.26 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=28.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
+|++++|+|+|||||||+++.|++.+ |. .+++..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~----g~--~~i~~d 40 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL----HA--AFLDGD 40 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH----TC--EEEEGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh----Cc--EEEeCc
Confidence 57899999999999999999999976 44 455543
No 208
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.40 E-value=7.9e-05 Score=73.98 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=25.3
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGl 240 (701)
..+|++++|.|++|||||||++.|++.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 467899999999999999999999998
No 209
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.40 E-value=6.5e-05 Score=72.59 Aligned_cols=34 Identities=35% Similarity=0.309 Sum_probs=24.9
Q ss_pred ceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 208 EIICDL---VEGGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 208 ~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
..++++ +.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 356666 6788999999999999999999999877
No 210
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.37 E-value=2.4e-05 Score=82.24 Aligned_cols=25 Identities=52% Similarity=0.828 Sum_probs=23.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
++++|+||||||||||+++|++.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 7899999999999999999999873
No 211
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.36 E-value=0.00035 Score=75.23 Aligned_cols=41 Identities=24% Similarity=0.300 Sum_probs=33.3
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
+..|.++.|.|++|+|||||+..++..... .|..|+|++..
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~-~g~~vlyi~~E 111 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFIDAE 111 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHH-CCCeEEEEECC
Confidence 568899999999999999999888765542 35678888875
No 212
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.33 E-value=9.3e-05 Score=80.35 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=27.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDH 245 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~ 245 (701)
+..|++++|+|||||||||||++|++++.+.+
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 55689999999999999999999999997653
No 213
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.33 E-value=0.00021 Score=66.08 Aligned_cols=27 Identities=30% Similarity=0.644 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLAD 243 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp 243 (701)
+..++|.||+|+|||||++.++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 568899999999999999999987743
No 214
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.32 E-value=0.0006 Score=69.38 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
+..++|.||+|+|||||++.|+..+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999998774
No 215
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.32 E-value=3.1e-05 Score=74.82 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=25.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCC
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADD 244 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~ 244 (701)
+.++|+|++|||||||++.|+|++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 578999999999999999999999876
No 216
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.32 E-value=0.00037 Score=70.23 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=42.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~P 296 (701)
...++|.||+|+|||||++.|+..+ +..++.++...++.+ .... .....-+-.+..+....+
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~----~~~~~~i~~~~~~~g--------~~~~------~~~~~~~~~~~~~~~~~~ 125 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES----NFPFIKICSPDKMIG--------FSET------AKCQAMKKIFDDAYKSQL 125 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH----TCSEEEEECGGGCTT--------CCHH------HHHHHHHHHHHHHHTSSE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh----CCCEEEEeCHHHhcC--------CchH------HHHHHHHHHHHHHHhcCC
Confidence 3588999999999999999999874 233344443322110 0000 001112234445555779
Q ss_pred CEEEEcCC
Q 005344 297 ETIIIDEI 304 (701)
Q Consensus 297 dVIILDEP 304 (701)
.+|++||+
T Consensus 126 ~vl~iDEi 133 (272)
T 1d2n_A 126 SCVVVDDI 133 (272)
T ss_dssp EEEEECCH
T ss_pred cEEEEECh
Confidence 99999996
No 217
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.31 E-value=0.00017 Score=68.58 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLAD 243 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp 243 (701)
.++|.||+|+|||||++.++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 8999999999999999999987643
No 218
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.30 E-value=7.2e-05 Score=78.38 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=25.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEE
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiV 252 (701)
++++|+|+|||||||||+.|+|+. .|.+++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~---~~~~~aVi 36 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ---HGYKIAVI 36 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC---CCCCEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc---CCCcEEEE
Confidence 588999999999999999999986 23444444
No 219
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.29 E-value=9.1e-05 Score=78.59 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCC--CCCcEEEEEcC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLAD--DHMKRVVIVDT 254 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp--~~GkrViiVd~ 254 (701)
+++|+||||||||||+++|++++.. +.|. |.++..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-v~~i~~ 130 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-VEVITT 130 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-EEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCe-EEEEee
Confidence 8999999999999999999999873 3343 455543
No 220
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.28 E-value=0.0001 Score=69.56 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=31.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
+|.+++|+|++||||||+++.|++.+.+ .|..++.++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECC
Confidence 5789999999999999999999998865 4544555553
No 221
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.27 E-value=0.00026 Score=68.65 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=53.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccc-ccCCC-CCCCCCchhhhccCCChhHHHHHHHHHHHc
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEI-GGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EI-a~~~~-ip~~~ig~~rr~~v~s~G~qQRV~IArAL~ 293 (701)
+|.+++|.||+||||||++..++..+. ..|.++.++...... .+... ..+.++.. ....+.+... .+. .+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~-~~~~~~~~~~----~~~-~~~ 74 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK-LGKKKVAVFKPKIDSRYHSTMIVSHSGNGV-EAHVIERPEE----MRK-YIE 74 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEEEEEEC-----CCCEECC----CE-ECEEESSGGG----GGG-GCC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeeccccccCcccEEecCCCce-eeEEECCHHH----HHH-Hhc
Confidence 477999999999999999854444332 235666655211000 00000 00111100 0000111100 000 001
Q ss_pred cCCCEEEEcCCCCcccHHHH---HHHHhcCCEEEEEEcChh
Q 005344 294 HMPETIIIDEIGTELEALAA---STIAQRGVQLVGTAHGMT 331 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~---~~l~e~GvtVIiTTHd~~ 331 (701)
..+++|++||.-. ++.... ..+.+.|+.++++.++.+
T Consensus 75 ~~~dvviIDE~Q~-~~~~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPSLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp TTEEEEEECCGGG-SCTTHHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCCEEEEECccc-CCHHHHHHHHHHHHCCCCEEEEeeccc
Confidence 3578999999863 433222 334567999999998654
No 222
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.25 E-value=0.00042 Score=81.78 Aligned_cols=101 Identities=23% Similarity=0.316 Sum_probs=63.3
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~ 293 (701)
+..-..++|.||||||||||+|+||+.+ |..++.++....+.. . +.....+-+-++..|..
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~el----g~~~~~v~~~~l~sk-------~--------~gese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMSK-------L--------AGESESNLRKAFEEAEK 295 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTT----TCEEEEEEHHHHHSS-------C--------TTHHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHh----CCeEEEEEhHHhhcc-------c--------chHHHHHHHHHHHHHHH
Confidence 4455789999999999999999999875 445565554321110 0 11112334566777888
Q ss_pred cCCCEEEEcCCCC----------cccHHHHHHH--------HhcCCEEEEEEcChhHH
Q 005344 294 HMPETIIIDEIGT----------ELEALAASTI--------AQRGVQLVGTAHGMTID 333 (701)
Q Consensus 294 ~~PdVIILDEPts----------gLD~~a~~~l--------~e~GvtVIiTTHd~~l~ 333 (701)
+.|-||++||+-+ +.+.....++ ...++.||++|...+.+
T Consensus 296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 9999999999832 1111112222 23467888888765543
No 223
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.24 E-value=0.00023 Score=74.13 Aligned_cols=71 Identities=24% Similarity=0.420 Sum_probs=45.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
....++|.||||+|||||++.|+..+ +..++.+....... ...+ .....-+-.+..+....
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~----~~~~~~v~~~~l~~-------~~~g--------~~~~~~~~~f~~a~~~~ 110 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSSSDLVS-------KWMG--------ESEKLVKQLFAMARENK 110 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH----TCEEEEEEHHHHHT-------TTGG--------GHHHHHHHHHHHHHHTS
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH----CCCEEEEchHHHhh-------cccc--------hHHHHHHHHHHHHHhcC
Confidence 34679999999999999999999875 34445544321110 0001 11122344556677789
Q ss_pred CCEEEEcCCC
Q 005344 296 PETIIIDEIG 305 (701)
Q Consensus 296 PdVIILDEPt 305 (701)
|.+|++||+-
T Consensus 111 ~~vl~iDEid 120 (322)
T 3eie_A 111 PSIIFIDQVD 120 (322)
T ss_dssp SEEEEEECGG
T ss_pred CeEEEechhh
Confidence 9999999985
No 224
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.24 E-value=0.00063 Score=62.66 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=52.8
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~ 293 (701)
...+..++|.||+|+|||++.+.|+.......+. ++ ++.... +.. .. ....+..
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~-~v-~~~~~~-------~~~------------~~--~~~~~~~--- 74 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGE-FV-YRELTP-------DNA------------PQ--LNDFIAL--- 74 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSC-CE-EEECCT-------TTS------------SC--HHHHHHH---
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCC-EE-EECCCC-------Ccc------------hh--hhcHHHH---
Confidence 3466789999999999999999999876443222 23 433211 100 00 0111222
Q ss_pred cCCCEEEEcCCCCcccHHHHHHHH------hcCCEEEEEEc
Q 005344 294 HMPETIIIDEIGTELEALAASTIA------QRGVQLVGTAH 328 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD~~a~~~l~------e~GvtVIiTTH 328 (701)
.+..+|++||+. .++...+..+. ...+.+|++|.
T Consensus 75 a~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~ 114 (145)
T 3n70_A 75 AQGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGD 114 (145)
T ss_dssp HTTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEES
T ss_pred cCCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECC
Confidence 255799999996 67766654442 22456777775
No 225
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.21 E-value=0.00022 Score=75.71 Aligned_cols=71 Identities=23% Similarity=0.391 Sum_probs=45.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMP 296 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~P 296 (701)
...++|.||+|||||||++.|+..+. ..++.++....... . +.......+..+..+....|
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~----~~~~~v~~~~l~~~-------~--------~g~~~~~~~~~f~~a~~~~~ 144 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEAN----STFFSVSSSDLVSK-------W--------MGESEKLVKQLFAMARENKP 144 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHT----CEEEEEEHHHHHSC-------C-----------CHHHHHHHHHHHHHTSS
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC----CCEEEeeHHHHhhh-------h--------cchHHHHHHHHHHHHHHcCC
Confidence 45689999999999999999999763 34454443211100 0 01112223445556666789
Q ss_pred CEEEEcCCCC
Q 005344 297 ETIIIDEIGT 306 (701)
Q Consensus 297 dVIILDEPts 306 (701)
.+|++||+-.
T Consensus 145 ~vl~iDEid~ 154 (355)
T 2qp9_X 145 SIIFIDQVDA 154 (355)
T ss_dssp EEEEEECGGG
T ss_pred eEEEEechHh
Confidence 9999999863
No 226
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.21 E-value=0.00047 Score=75.49 Aligned_cols=73 Identities=25% Similarity=0.416 Sum_probs=45.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
....++|.||||+|||||++.|+..+. +..++.+........ ..+. . ...-+-.+..+....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~---~~~~~~v~~~~l~~~-------~~g~------~--~~~~~~~f~~a~~~~ 227 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSSDLVSK-------WLGE------S--EKLVKNLFQLARENK 227 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCC---SSEEEEECCC----------------------C--CCTHHHHHHHHHHSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC---CCCEEEEeHHHHHhh-------hcch------H--HHHHHHHHHHHHHcC
Confidence 446899999999999999999999872 344555554321110 0010 0 011133445556688
Q ss_pred CCEEEEcCCCC
Q 005344 296 PETIIIDEIGT 306 (701)
Q Consensus 296 PdVIILDEPts 306 (701)
|.+|++||+-.
T Consensus 228 ~~vl~iDEid~ 238 (444)
T 2zan_A 228 PSIIFIDEIDS 238 (444)
T ss_dssp SEEEEESCTTT
T ss_pred CeEEEEechHh
Confidence 99999999963
No 227
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.21 E-value=0.00057 Score=76.23 Aligned_cols=71 Identities=30% Similarity=0.437 Sum_probs=46.8
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHcc
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
.....++|.||||+||||+++.|+..+ +..++.++.. ++. ....+. .....+..+..+...
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~vn~~-~l~------~~~~g~--------~~~~~~~~f~~A~~~ 296 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGP-EIM------SKLAGE--------SESNLRKAFEEAEKN 296 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC----SSEEEEEEHH-HHH------TSCTTH--------HHHHHHHHHHHHHHT
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh----CCCEEEEEch-Hhh------hhhcch--------hHHHHHHHHHHHHhc
Confidence 445689999999999999999999875 3445555432 110 000111 112234556677778
Q ss_pred CCCEEEEcCC
Q 005344 295 MPETIIIDEI 304 (701)
Q Consensus 295 ~PdVIILDEP 304 (701)
.|.+|++||+
T Consensus 297 ~p~iLfLDEI 306 (489)
T 3hu3_A 297 APAIIFIDEL 306 (489)
T ss_dssp CSEEEEEESH
T ss_pred CCcEEEecch
Confidence 8999999998
No 228
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.20 E-value=0.00033 Score=73.32 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=68.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc---cccCCCCCCCCCchhh-hccC--CChhHHHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE---IGGDGDVPHSGIGRAR-RMQV--PNVNMQHSVM 287 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E---Ia~~~~ip~~~ig~~r-r~~v--~s~G~qQRV~ 287 (701)
+.+|++++|.|+||+|||||+..++..... .|..|+++..... +...-.-...++.... +... .+.++.+++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~ 143 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLS 143 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHH
Confidence 678999999999999999999998865543 3467777764311 1000000000111100 0011 2345667888
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHH--HHH-HhcCCE--EEEEEc
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAA--STI-AQRGVQ--LVGTAH 328 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~--~~l-~e~Gvt--VIiTTH 328 (701)
.+......+.+++.|+|...++.... +.+ .+.|.. +|++-|
T Consensus 144 ~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 144 MAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 88777778899999998765544321 233 344777 888776
No 229
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.20 E-value=0.00018 Score=71.32 Aligned_cols=28 Identities=21% Similarity=0.532 Sum_probs=25.8
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
.+|+.++|+||||||||||++.|++.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999999999875
No 230
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.18 E-value=0.00018 Score=69.59 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=30.4
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
+.+|.+++|+|++||||||+++.|++.+. + +.++++.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~---~--~~~i~~D 54 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLP---N--CSVISQD 54 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTST---T--EEEEEGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcC---C--cEEEeCC
Confidence 56788999999999999999999999874 2 3566554
No 231
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.17 E-value=0.00024 Score=79.59 Aligned_cols=24 Identities=50% Similarity=0.899 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLs 242 (701)
.++|+||||||||||+++|++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999874
No 232
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.16 E-value=0.00012 Score=71.41 Aligned_cols=41 Identities=27% Similarity=0.328 Sum_probs=34.8
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
+..|.+++|+|++||||||+.+.|++.+.+..|..+++++.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 56788999999999999999999999987666755677764
No 233
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.15 E-value=0.00096 Score=73.79 Aligned_cols=91 Identities=20% Similarity=0.208 Sum_probs=55.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccccc----------CCCCCCCCCchhhhccCCChhHHHHH
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGG----------DGDVPHSGIGRARRMQVPNVNMQHSV 286 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~----------~~~ip~~~ig~~rr~~v~s~G~qQRV 286 (701)
+.+++++|++||||||++..|+..+.. .|++|.+++....-.+ ...+|..... ...+...--+-
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~-~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~-----~~~dp~~i~~~ 173 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK-RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNP-----QEKDAIKLAKE 173 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCT-----TCCCHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecC-----CCCCHHHHHHH
Confidence 569999999999999999999998875 5788888875422110 0011110000 00111111223
Q ss_pred HHHHHHccCCCEEEEcCCCC-cccHHHH
Q 005344 287 MIEAVENHMPETIIIDEIGT-ELEALAA 313 (701)
Q Consensus 287 ~IArAL~~~PdVIILDEPts-gLD~~a~ 313 (701)
++..+....+|++|+|.|+. ..|....
T Consensus 174 al~~a~~~~~DvVIIDTaGrl~~d~~lm 201 (443)
T 3dm5_A 174 GVDYFKSKGVDIIIVDTAGRHKEDKALI 201 (443)
T ss_dssp HHHHHHHTTCSEEEEECCCCSSCCHHHH
T ss_pred HHHHHHhCCCCEEEEECCCcccchHHHH
Confidence 45566667899999999984 3344333
No 234
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.14 E-value=0.0008 Score=66.12 Aligned_cols=109 Identities=19% Similarity=0.247 Sum_probs=59.2
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC--cccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHH
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS--NEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~--~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL 292 (701)
.+|.++++.|+.||||||++--++..+. ..|++|.++.-. ...+......+.++... ...+.+.. -+...+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~-a~~~~~~~-----~i~~~~ 78 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQ-AVAIKNSR-----EILKYF 78 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC-------CEEECTTSCEEE-CEEESSST-----HHHHHC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeccCccchHHHHHhhcCCcee-eEeeCCHH-----HHHHHH
Confidence 3578999999999999998877776654 456777766311 11110000111111110 01111111 011111
Q ss_pred ccCCCEEEEcCCCCcccHH---HHHHHHhcCCEEEEEEcChh
Q 005344 293 NHMPETIIIDEIGTELEAL---AASTIAQRGVQLVGTAHGMT 331 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~~---a~~~l~e~GvtVIiTTHd~~ 331 (701)
..+.++|++||.-. +|+. ..+.+.+.|+.||++.++.+
T Consensus 79 ~~~~dvViIDEaqf-l~~~~v~~l~~l~~~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 79 EEDTEVIAIDEVQF-FDDEIVEIVNKIAESGRRVICAGLDMD 119 (191)
T ss_dssp CTTCSEEEECSGGG-SCTHHHHHHHHHHHTTCEEEEEECSBC
T ss_pred hccCCEEEEECCCC-CCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 12479999999742 4333 33455667999999998653
No 235
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.13 E-value=0.00072 Score=67.00 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.6
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHh
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIAR 239 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaG 239 (701)
+..|+.++|.||+||||||++..++.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 56789999999999999998887754
No 236
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.11 E-value=0.00082 Score=71.75 Aligned_cols=71 Identities=21% Similarity=0.366 Sum_probs=45.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
.+..++|.||+|+|||||++.|+..+ +..++.++...... ...+ ......+..+..+....
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~----~~~~~~v~~~~l~~-------~~~g--------~~~~~~~~~~~~a~~~~ 207 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES----NATFFNISAASLTS-------KYVG--------EGEKLVRALFAVARELQ 207 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT----TCEEEEECSCCC----------------------CHHHHHHHHHHHHHSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh----cCcEEEeeHHHhhc-------cccc--------hHHHHHHHHHHHHHhcC
Confidence 45789999999999999999998875 34455555432111 0001 11122334455566778
Q ss_pred CCEEEEcCCC
Q 005344 296 PETIIIDEIG 305 (701)
Q Consensus 296 PdVIILDEPt 305 (701)
|.+|++||+-
T Consensus 208 ~~il~iDEid 217 (389)
T 3vfd_A 208 PSIIFIDQVD 217 (389)
T ss_dssp SEEEEEETGG
T ss_pred CeEEEEECch
Confidence 9999999994
No 237
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.11 E-value=0.00019 Score=71.94 Aligned_cols=24 Identities=42% Similarity=0.804 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
..++|.||+|+|||||++.|+..+
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 457899999999999999999875
No 238
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.10 E-value=0.00024 Score=73.40 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
..++|.||||+|||+|.+.|+..+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578889999999999999999887
No 239
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.10 E-value=0.00032 Score=73.31 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
+..++|.||+|+|||+|+++|+..+....|..|.++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 68999999999999999999998775233566666653
No 240
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.09 E-value=0.0012 Score=72.09 Aligned_cols=111 Identities=16% Similarity=0.089 Sum_probs=67.2
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc---c-----ccCCCCCCCCCchhhhccCCChhHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE---I-----GGDGDVPHSGIGRARRMQVPNVNMQHS 285 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E---I-----a~~~~ip~~~ig~~rr~~v~s~G~qQR 285 (701)
+.+|++++|.|+||+|||||+..++.......|..|+++..... + +....++...+. ....+....++
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~----~g~l~~~~~~~ 272 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVR----LGQLTDRDFSR 272 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCC----GGGCCHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHh----CCCCCHHHHHH
Confidence 77899999999999999999999998776545677888765311 1 001111111110 11123345566
Q ss_pred HHHHHHHccCCCEEEEcCCCCcccHHHH--HHH-HhcCCEEEEEEc
Q 005344 286 VMIEAVENHMPETIIIDEIGTELEALAA--STI-AQRGVQLVGTAH 328 (701)
Q Consensus 286 V~IArAL~~~PdVIILDEPtsgLD~~a~--~~l-~e~GvtVIiTTH 328 (701)
+.-+........+.+.|+|...++-... +.+ .+.|..+|++-+
T Consensus 273 ~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 273 LVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 6655555556678888887544433221 223 356888887765
No 241
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.05 E-value=0.00021 Score=77.35 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=29.7
Q ss_pred ceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 208 EIICDL---VEGGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 208 ~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.+++++ +.+|++++|+||||||||||++.|++.+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 355565 7889999999999999999999999964
No 242
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.03 E-value=0.00063 Score=72.63 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=23.9
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGl 240 (701)
+.+|..++|.||||||||||...++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 556778899999999999999999875
No 243
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.02 E-value=0.0016 Score=61.21 Aligned_cols=23 Identities=48% Similarity=0.762 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|.||+|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999875
No 244
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.02 E-value=0.00028 Score=68.58 Aligned_cols=25 Identities=40% Similarity=0.622 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
+.+++|+||+||||||+++.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 245
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.00 E-value=0.00046 Score=71.50 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=29.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCC-----CCcEEEEEcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADD-----HMKRVVIVDT 254 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~-----~GkrViiVd~ 254 (701)
.+..++|.||+|+|||||++.++..+... .+..+++++.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 45689999999999999999999877432 1445566654
No 246
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.00 E-value=0.00066 Score=62.48 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=24.1
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
...+..++|.||+|+|||++.+.|+....
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 34567899999999999999999887543
No 247
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.99 E-value=0.00043 Score=79.84 Aligned_cols=115 Identities=11% Similarity=0.075 Sum_probs=65.8
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCC--CCCcEEEEEcCCcccc--------cCCCCCCC-CCc-hhhhccCC-Ch
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLAD--DHMKRVVIVDTSNEIG--------GDGDVPHS-GIG-RARRMQVP-NV 280 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp--~~GkrViiVd~~~EIa--------~~~~ip~~-~ig-~~rr~~v~-s~ 280 (701)
+..+.+++|+|++|+|||||++.|++...+ ..|. + .++..... +.....+. .+. ....+.+. ..
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~--V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTp 82 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGR--V-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAP 82 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCC--G-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccce--e-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCC
Confidence 456789999999999999999999977643 2333 1 11110000 00000000 000 00011111 11
Q ss_pred hHH--HHHHHHHHHccCCCEEEEcCCCCcccHHHHHHH---HhcCCEEEEEEcChhH
Q 005344 281 NMQ--HSVMIEAVENHMPETIIIDEIGTELEALAASTI---AQRGVQLVGTAHGMTI 332 (701)
Q Consensus 281 G~q--QRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l---~e~GvtVIiTTHd~~l 332 (701)
|.. ...+...+...+..++++| ++.+++......+ ...|+.+|++.|.++.
T Consensus 83 G~~~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 83 GYGDFVGEIRGALEAADAALVAVS-AEAGVQVGTERAWTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CccchHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHHHHHccCCEEEEecCCch
Confidence 211 1233444556788999999 9999998776433 5568999999998875
No 248
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.97 E-value=0.0004 Score=66.23 Aligned_cols=25 Identities=32% Similarity=0.628 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLAD 243 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp 243 (701)
.++|+|+||||||||++.+++...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 6799999999999999999998754
No 249
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.96 E-value=0.0013 Score=72.50 Aligned_cols=30 Identities=50% Similarity=0.811 Sum_probs=25.3
Q ss_pred ccccCC--EEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 213 LVEGGG--SILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 213 lI~~Ge--iilIIGPNGSGKTTLLR~IaGlLs 242 (701)
.+..|. .++|.||+|+|||||++.|+..+.
T Consensus 44 ~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 44 AIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 355554 699999999999999999999874
No 250
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.95 E-value=0.00045 Score=75.17 Aligned_cols=52 Identities=10% Similarity=-0.052 Sum_probs=40.8
Q ss_pred CC--CEEEEcCCCCcccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEE-EEeCC-eE
Q 005344 295 MP--ETIIIDEIGTELEALAASTI--------AQRGVQLVGTAHGMTIDNIVKNPSL-QILVG-GI 348 (701)
Q Consensus 295 ~P--dVIILDEPtsgLD~~a~~~l--------~e~GvtVIiTTHd~~l~~~l~drvl-vl~~G-~I 348 (701)
+| +++++||++..+|+...... ...|.+++ +|....+..+|+++. .+..| ++
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~ 202 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQP 202 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCce
Confidence 78 89999999999999876432 22366654 999999999999998 77788 65
No 251
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.89 E-value=0.00043 Score=67.04 Aligned_cols=29 Identities=34% Similarity=0.593 Sum_probs=26.1
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
+.+|.+++|+||+||||||+++.|+..+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45788999999999999999999998874
No 252
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.88 E-value=0.00047 Score=66.38 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 005344 219 SILVIGPPGVGKTTLIREIAR 239 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaG 239 (701)
+++|+|+|||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 253
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.88 E-value=0.00051 Score=65.23 Aligned_cols=39 Identities=36% Similarity=0.595 Sum_probs=31.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
.+|.+++|+|++||||||+++.|+..+...++ .+.+++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~-~~~~~~~ 49 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGY-RVEVLDG 49 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEEH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC-eEEEeeH
Confidence 46789999999999999999999999876544 4555653
No 254
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.87 E-value=0.0032 Score=66.56 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh--cCCCCCC
Q 005344 219 SILVIGPPGVGKTTLIREIAR--MLADDHM 246 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaG--lLsp~~G 246 (701)
.++|+|++|||||||++.|+| +++...|
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~ 65 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCC
Confidence 889999999999999999999 4444433
No 255
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.86 E-value=0.00064 Score=73.09 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=24.5
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
+.+| +++|+|||||||||||++|.++.
T Consensus 24 ~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 6677 99999999999999999999854
No 256
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.86 E-value=0.00044 Score=73.56 Aligned_cols=36 Identities=31% Similarity=0.567 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEc
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVD 253 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd 253 (701)
+..++|+|+||||||||++.|++.+.+..++ |.++.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~-v~V~~ 109 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHK-LSVLA 109 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCC-EEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCe-EEEEe
Confidence 5689999999999999999999998776554 44443
No 257
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.85 E-value=0.00053 Score=65.37 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLs 242 (701)
.++|+|+||||||||++.++|...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 579999999999999999999853
No 258
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=96.85 E-value=0.00058 Score=69.30 Aligned_cols=144 Identities=11% Similarity=0.034 Sum_probs=87.6
Q ss_pred ChHHHHHHHHHcCCCCcEEEccCcCccceeEeehhhhccChhHHHHhhhCCCcEEEEecCCHHHHHHHHHHHhccccCCC
Q 005344 488 LEADLLQVAKVMGLEDEIDVTDDIGTADAILASSSEMKQNPWIRGVAKFHQLPVFVIKSNTMAQMVKAVRMILGMESFGT 567 (701)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~vl~~~~~~~~~~~~~~~a~~~~~pi~~~k~~~~~q~~~~~~~~~~~~~~~~ 567 (701)
..+.|+.++..|+++..|.+..+-++-.+.+.+. ...+-.+. .--.|.-+||+.|++.-....
T Consensus 66 a~~~L~~ll~~m~~~~~i~~~~~~~~~~i~i~i~-----g~d~g~LI------------Gk~G~tLdALQyL~~~~vn~~ 128 (225)
T 3gku_A 66 AIEFLEQVFDAMNMAVDISVEYNETEKEMNVNLK-----GDDMGILI------------GKRGQTLDSLQYLVSLVVNKS 128 (225)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEEETTTTEEEEEEE-----CHHHHHCS------------TTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCeEEEEEEecCCCEEEEEEc-----CCccceee------------cCCCeEhHHHHHHHHHHHHhc
Confidence 4678999999999995444432222233555442 11222211 122456667777665422110
Q ss_pred cCCCCCCCCCcccccccCCCCCCChHHHHHHHHHHHHHHHHhcCCCeeeecCCCChHHHHHHHHHHHHc-CCceeeccCC
Q 005344 568 ISKLPNKSTSDIEIEDDAPKRKPTLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIVARQLELVESY-QLAAENSGTE 646 (701)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~e~~~ai~~~v~~~~~~vel~pr~~~i~~~q~~l~~~y-~l~~~~~g~~ 646 (701)
. ....+ .-+++++- . ..-.+++. .-|+-|+++| .-.|+||.|-|-+++=||+-|..+..+ .+.++|-|+|
T Consensus 129 ~-~~~~r--v~LDi~~Y--R-~rR~e~L~--~lA~~~A~kV-~~tg~~v~L~PM~~~ERriIH~al~~~~~V~T~SeGee 199 (225)
T 3gku_A 129 S-SDYIR--VKLDTENY--R-ERRKETLE--TLAKNIAYKV-KRTKRSVSLEPMNPYERRIIHAALQNDKYVVTRSDGEE 199 (225)
T ss_dssp C-SSCCE--EEEESTTH--H-HHHHHHHH--HHHHHHHHHH-HHHCSCEECCCCCHHHHHHHHHHTTTCSSEEEEEESST
T ss_pred C-CCceE--EEEecchH--H-HHHHHHHH--HHHHHHHHHH-HHhCCEEEccCCCHHHHHHHHHHHccCCCcEEEEeecC
Confidence 0 00000 12222111 0 01112222 3467788884 447999999999999999999999887 8999999999
Q ss_pred CCceeEEecCc
Q 005344 647 LNPRLQILPLR 657 (701)
Q Consensus 647 ~~~r~~i~p~~ 657 (701)
|+|||.|+|..
T Consensus 200 p~R~VVI~~~~ 210 (225)
T 3gku_A 200 PFRHVIISLKR 210 (225)
T ss_dssp TSCEEEEEECC
T ss_pred CCeEEEEEEcC
Confidence 99999999985
No 259
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.84 E-value=0.00055 Score=65.70 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 005344 219 SILVIGPPGVGKTTLIREIAR 239 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaG 239 (701)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 260
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.81 E-value=0.0068 Score=59.80 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLADDH 245 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp~~ 245 (701)
.++|+|++|+|||||++.|+|......
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~ 57 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHS 57 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCcc
Confidence 679999999999999999999765443
No 261
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.81 E-value=0.0022 Score=62.46 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=29.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
+.+|+++.|.|+||+|||||+-.++-...-..|..|.++..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 77899999999999999999877653221123455666654
No 262
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.79 E-value=0.00032 Score=73.24 Aligned_cols=38 Identities=39% Similarity=0.703 Sum_probs=30.7
Q ss_pred ceeccc---cccCCE--EEEEcCCCCcHHHHHHHHHhcCCCCC
Q 005344 208 EIICDL---VEGGGS--ILVIGPPGVGKTTLIREIARMLADDH 245 (701)
Q Consensus 208 ~~L~dl---I~~Gei--ilIIGPNGSGKTTLLR~IaGlLsp~~ 245 (701)
.+++.+ +..|++ ++|.||||+||||+++++++.+.+..
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 444444 777876 99999999999999999999986543
No 263
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.76 E-value=0.00059 Score=72.11 Aligned_cols=46 Identities=20% Similarity=0.425 Sum_probs=35.6
Q ss_pred ceeccc---cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 208 EIICDL---VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 208 ~~L~dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
.+++++ +.++.+++|+|+||+|||||++.|++.+.+.. .+|.+++.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~-~~v~v~~~ 92 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREG-LKVAVIAV 92 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcC-CeEEEEee
Confidence 344444 56788999999999999999999999987764 44555543
No 264
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.75 E-value=0.0003 Score=82.91 Aligned_cols=72 Identities=21% Similarity=0.373 Sum_probs=45.6
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN 293 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~ 293 (701)
+..+..++|.||||||||||+++|++.+... ++.++.. ++ .... +......-+..+..+..
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~~~~----~i~v~~~-~l------~~~~--------~g~~~~~i~~~f~~a~~ 568 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKGP-EL------LTMW--------FGESEANVREIFDKARQ 568 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC----CCCCCCS-SS------TTCC--------TTTSSHHHHHHHHHHHH
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHhCCC----EEEEech-Hh------hhhh--------cCccHHHHHHHHHHHHh
Confidence 4567889999999999999999999987421 1222221 11 0000 11111223345566667
Q ss_pred cCCCEEEEcCC
Q 005344 294 HMPETIIIDEI 304 (701)
Q Consensus 294 ~~PdVIILDEP 304 (701)
+.|.+|++||+
T Consensus 569 ~~p~vl~iDEi 579 (806)
T 1ypw_A 569 AAPCVLFFDEL 579 (806)
T ss_dssp HCSBCCCCSSH
T ss_pred cCCeEEEEECh
Confidence 78999999996
No 265
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.70 E-value=0.0025 Score=75.19 Aligned_cols=102 Identities=23% Similarity=0.349 Sum_probs=52.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCC------CCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHH
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADD------HMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEA 290 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~------~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IAr 290 (701)
..+++|+||||+||||+++.++..+... .+.+++.++....+++.. . ......+-+-.+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~---~----------~g~~~~~l~~~~~~ 257 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAK---Y----------RGEFEERLKAVIQE 257 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------------CHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCc---c----------chHHHHHHHHHHHH
Confidence 3578999999999999999999987432 256677766532221100 0 00111122223333
Q ss_pred HHcc-CCCEEEEcCCCCc---------ccHHHH-HH-HHhcCCEEEEEEcChh
Q 005344 291 VENH-MPETIIIDEIGTE---------LEALAA-ST-IAQRGVQLVGTAHGMT 331 (701)
Q Consensus 291 AL~~-~PdVIILDEPtsg---------LD~~a~-~~-l~e~GvtVIiTTHd~~ 331 (701)
+... .|.+|++||.-.- .|+... .. +...++.+|+++....
T Consensus 258 ~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 258 VVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDE 310 (854)
T ss_dssp HHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHH
T ss_pred HHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchH
Confidence 3333 6779999999532 222211 22 2344577777776443
No 266
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.70 E-value=0.0035 Score=79.12 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=66.0
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchh--hhccCCChhHHHHHHHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRA--RRMQVPNVNMQHSVMIEAV 291 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~--rr~~v~s~G~qQRV~IArA 291 (701)
+.+|.+++|.||||+|||||+..++..... .|.+++|++........ .....++... ...+..+..+....+-..+
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~-~G~~vlyis~E~s~~~~-~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv 457 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPI-YARKLGVDIDNLLCSQPDTGEQALEICDALA 457 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchHHH-HHHHcCCCHHHeEEcCCCCHHHHHHHHHHHH
Confidence 558899999999999999999888776543 35678888875322100 0000111110 0111222222222222223
Q ss_pred HccCCCEEEEcCCCCccc--------------HHHH------HH----HHhcCCEEEEEEcC
Q 005344 292 ENHMPETIIIDEIGTELE--------------ALAA------ST----IAQRGVQLVGTAHG 329 (701)
Q Consensus 292 L~~~PdVIILDEPtsgLD--------------~~a~------~~----l~e~GvtVIiTTHd 329 (701)
....|++||+|.+..-.. ..++ +. +++.|+++|++.|-
T Consensus 458 ~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl 519 (1706)
T 3cmw_A 458 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 519 (1706)
T ss_dssp HHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 457899999999975332 1111 12 25779999999884
No 267
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.66 E-value=0.0032 Score=63.43 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=58.2
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccc-cCCC-CCCCCCchhhhccCCChhHHHHHHHHHHH
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIG-GDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAVE 292 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa-~~~~-ip~~~ig~~rr~~v~s~G~qQRV~IArAL 292 (701)
.+|.+.++.|+-||||||.|--++.-+. ..|++|.++.-..... +... ..+.++.. ....+.+.. . .+. ..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~-~~g~kVli~k~~~d~R~ge~~i~s~~g~~~-~a~~~~~~~---~-~~~-~~ 98 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQ-FAKQHAIVFKPCIDNRYSEEDVVSHNGLKV-KAVPVSASK---D-IFK-HI 98 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEECC-----------------C-CEEECSSGG---G-GGG-GC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeccCCcchHHHHHhhcCCee-EEeecCCHH---H-HHH-HH
Confidence 4578999999999999998877766553 3467777764211100 0000 01111110 000111110 0 000 00
Q ss_pred ccCCCEEEEcCCCCcccH---HHHHHHHhcCCEEEEEEcChhH
Q 005344 293 NHMPETIIIDEIGTELEA---LAASTIAQRGVQLVGTAHGMTI 332 (701)
Q Consensus 293 ~~~PdVIILDEPtsgLD~---~a~~~l~e~GvtVIiTTHd~~l 332 (701)
....++|++||.-. +|. .....++..|+.||++.++.++
T Consensus 99 ~~~~dvViIDEaQF-~~~~~V~~l~~l~~~~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 99 TEEMDVIAIDEVQF-FDGDIVEVVQVLANRGYRVIVAGLDQDF 140 (214)
T ss_dssp CSSCCEEEECCGGG-SCTTHHHHHHHHHHTTCEEEEEECSBCT
T ss_pred hcCCCEEEEECccc-CCHHHHHHHHHHhhCCCEEEEEeccccc
Confidence 12479999999853 432 2334556779999999996653
No 268
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.64 E-value=0.006 Score=62.99 Aligned_cols=24 Identities=46% Similarity=0.678 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
..++|.||+|+|||||++.|+..+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 478999999999999999998875
No 269
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.61 E-value=0.0009 Score=62.98 Aligned_cols=26 Identities=38% Similarity=0.749 Sum_probs=23.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.|.+++|+|++||||||+.+.|+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998654
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.61 E-value=0.00081 Score=61.99 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLs 242 (701)
+++|+|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998753
No 271
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.61 E-value=0.001 Score=62.23 Aligned_cols=25 Identities=40% Similarity=0.587 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
..+.+|+|||||||||+|.+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999998654
No 272
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.60 E-value=0.0012 Score=61.72 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998874
No 273
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.59 E-value=0.0054 Score=67.82 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=34.4
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
+.+|++++|.|+||+|||||+-.++.......|.+|+++...
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 778999999999999999999888876654446678887653
No 274
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.58 E-value=0.0094 Score=61.25 Aligned_cols=88 Identities=20% Similarity=0.277 Sum_probs=50.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHc----
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVEN---- 293 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~---- 293 (701)
..+++.||+|+||||+++.++..+ +..++.++.... +... .+. ..-..+..
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l----~~~~~~i~~~~~----------~~~~----------i~~-~~~~~~~~~~~~ 103 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV----NADMMFVNGSDC----------KIDF----------VRG-PLTNFASAASFD 103 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT----TEEEEEEETTTC----------CHHH----------HHT-HHHHHHHBCCCS
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh----CCCEEEEccccc----------CHHH----------HHH-HHHHHHhhcccC
Confidence 356777889999999999999877 344555553210 0000 000 00011111
Q ss_pred cCCCEEEEcCCCCccc-HHHHHHH----H--hcCCEEEEEEcChh
Q 005344 294 HMPETIIIDEIGTELE-ALAASTI----A--QRGVQLVGTAHGMT 331 (701)
Q Consensus 294 ~~PdVIILDEPtsgLD-~~a~~~l----~--e~GvtVIiTTHd~~ 331 (701)
..+.+|++||+- .+. ......+ . ..++.+|+++....
T Consensus 104 ~~~~vliiDEi~-~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 104 GRQKVIVIDEFD-RSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp SCEEEEEEESCC-CGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCCeEEEEECCc-ccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 267999999996 444 3333322 2 24678888887654
No 275
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.58 E-value=0.004 Score=79.63 Aligned_cols=89 Identities=18% Similarity=0.249 Sum_probs=53.3
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCC--CchhhhccCCChhHHHH-HHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSG--IGRARRMQVPNVNMQHS-VMIEA 290 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~--ig~~rr~~v~s~G~qQR-V~IAr 290 (701)
+.+|.+++|.||||||||||...++.... ..|.++.+++....+.... ....+ +... .+..+..+++.. .+-..
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~e~~~~~l~-a~~~G~dl~~l-~v~~~~~~E~~l~~~~~l 1500 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPIY-ARKLGVDIDNL-LCSQPDTGEQALEICDAL 1500 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTTSCCCHHH-HHHTTCCTTTC-EEECCSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEcccccCHHH-HHHcCCCchhc-eeecCChHHHHHHHHHHH
Confidence 67899999999999999999999876544 3467788888653321100 00000 0000 111122333322 22223
Q ss_pred HHccCCCEEEEcCCC
Q 005344 291 VENHMPETIIIDEIG 305 (701)
Q Consensus 291 AL~~~PdVIILDEPt 305 (701)
+....|++||+||..
T Consensus 1501 vr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1501 ARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHTCCSEEEESCGG
T ss_pred HhcCCCCEEEEcChh
Confidence 445789999999984
No 276
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.58 E-value=0.0014 Score=65.50 Aligned_cols=30 Identities=37% Similarity=0.453 Sum_probs=27.4
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLAD 243 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp 243 (701)
+..|.+++|.|++||||||+++.|+..+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 347889999999999999999999999986
No 277
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.56 E-value=0.00075 Score=64.87 Aligned_cols=25 Identities=40% Similarity=0.598 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 278
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.56 E-value=0.0071 Score=67.33 Aligned_cols=35 Identities=31% Similarity=0.467 Sum_probs=28.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
...++|.||+|+|||||++.++..+ |..++.++..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l----~~~~i~in~s 111 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL----GYDILEQNAS 111 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT----TCEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEeCC
Confidence 3588999999999999999999987 4556666544
No 279
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.56 E-value=0.0065 Score=61.99 Aligned_cols=24 Identities=54% Similarity=0.895 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
..++|.||+|+|||||++.|+..+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999865
No 280
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.54 E-value=0.0041 Score=78.55 Aligned_cols=113 Identities=16% Similarity=0.214 Sum_probs=64.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccC--CChhHHHHHHHH-H
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQV--PNVNMQHSVMIE-A 290 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v--~s~G~qQRV~IA-r 290 (701)
+.+|++++|.||||+|||||+..++...... |.+|.|++......... ....++... .+.+ .....+.+-.+. .
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~-g~~VlyiS~Ees~~ql~-A~~lGvd~~-~L~i~~~~~leei~~~l~~l 805 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY-ARKLGVDID-NLLCSQPDTGEQALEICDAL 805 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHHH-HHHTTCCGG-GCEEECCSSHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHc-CCCeEEEeccchHHHHH-HHHcCCChh-heEEecCCcHHHHHHHHHHH
Confidence 6788999999999999999999999877643 45678887643211000 000011000 0100 111122111111 1
Q ss_pred HHccCCCEEEEcCCCCccc--------------HHHH------HH----HHhcCCEEEEEEcC
Q 005344 291 VENHMPETIIIDEIGTELE--------------ALAA------ST----IAQRGVQLVGTAHG 329 (701)
Q Consensus 291 AL~~~PdVIILDEPtsgLD--------------~~a~------~~----l~e~GvtVIiTTHd 329 (701)
+..+.|++||+|++..-.. ...+ .. +++.|++||++.|-
T Consensus 806 v~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql 868 (1706)
T 3cmw_A 806 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (1706)
T ss_dssp HHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 2247899999999985331 1111 12 25789999999983
No 281
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.52 E-value=0.0015 Score=67.94 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLAD 243 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp 243 (701)
.++|.||+|+||||+++.++..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999987754
No 282
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.51 E-value=0.001 Score=69.30 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=26.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADD 244 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~ 244 (701)
.+.+++|+|++|||||||++.|++++.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 45799999999999999999999999753
No 283
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.50 E-value=0.0012 Score=72.25 Aligned_cols=72 Identities=22% Similarity=0.284 Sum_probs=44.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHH---H
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAV---E 292 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArA---L 292 (701)
.+..++|.||||+|||||.+.|+..+... ..++.++..... ...++. . .+-+-.+..+ .
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~--~~~~~~~~~~~~-------~~~~~~--------~-~~~~~~f~~a~~~~ 123 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSK--VPFCPMVGSEVY-------STEIKK--------T-EVLMENFRRAIGLR 123 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTT--SCEEEEEGGGGC-------CSSSCH--------H-HHHHHHHHHTEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCC--ceEEEEeHHHHH-------HHhhhh--------h-HHHHHHHHHHHhhh
Confidence 34689999999999999999999987532 233444432111 111111 1 1123334444 4
Q ss_pred ccCCCEEEEcCCC
Q 005344 293 NHMPETIIIDEIG 305 (701)
Q Consensus 293 ~~~PdVIILDEPt 305 (701)
...|.+|++||+-
T Consensus 124 ~~~~~il~iDEid 136 (456)
T 2c9o_A 124 IKETKEVYEGEVT 136 (456)
T ss_dssp EEEEEEEEEEEEE
T ss_pred hcCCcEEEEechh
Confidence 5689999999984
No 284
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.47 E-value=0.0019 Score=71.25 Aligned_cols=27 Identities=33% Similarity=0.618 Sum_probs=24.0
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
...+++|+||||+||||+++.|+..+.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 456889999999999999999999874
No 285
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.45 E-value=0.0014 Score=61.46 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=22.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
+|..++|+|++|||||||++.+++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999999864
No 286
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.45 E-value=0.0013 Score=63.56 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=27.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEc
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVD 253 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd 253 (701)
..++|+|++|||||||++.|++.+... |.+|..+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~-g~~v~~i~ 41 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR-GIRPGLIK 41 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc-CCceeEEe
Confidence 578999999999999999999987643 44455443
No 287
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.44 E-value=0.0015 Score=59.67 Aligned_cols=19 Identities=37% Similarity=0.737 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 005344 219 SILVIGPPGVGKTTLIREI 237 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~I 237 (701)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 288
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.41 E-value=0.0017 Score=60.79 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998664
No 289
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.41 E-value=0.0035 Score=68.63 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 005344 218 GSILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGl 240 (701)
-.++|+|++|||||||++.|+|.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37899999999999999999874
No 290
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.40 E-value=0.0081 Score=69.55 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=24.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
.+..++|+||+|+||||+++.|+..+.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998763
No 291
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.39 E-value=0.00065 Score=74.39 Aligned_cols=50 Identities=34% Similarity=0.442 Sum_probs=39.9
Q ss_pred eEEEEeEEEEECcccccccceec--------------cc---cccCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 189 KMQVIGLTCRVGRAVAGSAEIIC--------------DL---VEGGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 189 ~IeI~nLs~rygr~v~G~~~~L~--------------dl---I~~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
.+.+.+|+..|.. ....|+ |+ +.+|+.++|+||+|||||||++.|++.+.
T Consensus 133 ri~Fe~ltp~yP~----er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHAN----SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCC----SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCC----CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3467788888863 234555 44 78999999999999999999999999874
No 292
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.39 E-value=0.0016 Score=60.12 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLs 242 (701)
.++|+|++|+|||||++.+++...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998643
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.37 E-value=0.0017 Score=61.22 Aligned_cols=26 Identities=42% Similarity=0.551 Sum_probs=23.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.+.+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998765
No 294
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.34 E-value=0.0062 Score=70.77 Aligned_cols=76 Identities=25% Similarity=0.372 Sum_probs=45.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccCCCE
Q 005344 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHMPET 298 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~PdV 298 (701)
.++|.||+|+|||+|.+.|+..+.. .+..++.++-. ++... + .. +.|. ...++....+.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~-~~~~~i~i~~s-~~~~~----~--~~--------~~~~----l~~~~~~~~~~v 582 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFG-DEESMIRIDMS-EYMEK----H--ST--------SGGQ----LTEKVRRKPYSV 582 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHS-CTTCEEEEEGG-GGCSS----C--CC--------C-------CHHHHHHCSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC-CCcceEEEech-hcccc----c--cc--------ccch----hhHHHHhCCCeE
Confidence 6999999999999999999998743 23445666543 21110 0 00 0111 111233356689
Q ss_pred EEEcCCCCcccHHHHHH
Q 005344 299 IIIDEIGTELEALAAST 315 (701)
Q Consensus 299 IILDEPtsgLD~~a~~~ 315 (701)
|++||+. .+.+.....
T Consensus 583 l~lDEi~-~~~~~~~~~ 598 (758)
T 3pxi_A 583 VLLDAIE-KAHPDVFNI 598 (758)
T ss_dssp EEEECGG-GSCHHHHHH
T ss_pred EEEeCcc-ccCHHHHHH
Confidence 9999996 455555433
No 295
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.33 E-value=0.0018 Score=71.25 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=33.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
++++++|+|++||||||++..|++.+.+. |.+|.+++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeecc
Confidence 67899999999999999999999999876 5667777653
No 296
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.33 E-value=0.0024 Score=60.85 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=24.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999887
No 297
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.32 E-value=0.002 Score=59.82 Aligned_cols=22 Identities=50% Similarity=0.697 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh
Q 005344 218 GSILVIGPPGVGKTTLIREIAR 239 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaG 239 (701)
.+++|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999997
No 298
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.32 E-value=0.0022 Score=61.38 Aligned_cols=35 Identities=37% Similarity=0.421 Sum_probs=28.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEc
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVD 253 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd 253 (701)
..++|.||+|+|||||++.|+..+... |..++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 689999999999999999999987643 44555554
No 299
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.31 E-value=0.0017 Score=61.56 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLs 242 (701)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 300
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.30 E-value=0.0081 Score=68.22 Aligned_cols=112 Identities=16% Similarity=0.257 Sum_probs=60.1
Q ss_pred ceeccccccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCccccc----CCCCCCCCCchhhhccCCChhHH
Q 005344 208 EIICDLVEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGG----DGDVPHSGIGRARRMQVPNVNMQ 283 (701)
Q Consensus 208 ~~L~dlI~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~----~~~ip~~~ig~~rr~~v~s~G~q 283 (701)
.++..++ .+.+++|.|+||+||||+++.|+..+.. .|.+|.++-.+...+. ........+. +.+.....+..
T Consensus 196 ~Av~~~~-~~~~~~I~G~pGTGKTt~i~~l~~~l~~-~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih--~ll~~~~~~~~ 271 (574)
T 3e1s_A 196 SVLDQLA-GHRLVVLTGGPGTGKSTTTKAVADLAES-LGLEVGLCAPTGKAARRLGEVTGRTASTVH--RLLGYGPQGFR 271 (574)
T ss_dssp HHHHHHT-TCSEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHTSCEEEHH--HHTTEETTEES
T ss_pred HHHHHHH-hCCEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEecCcHHHHHHhHhhhcccHHHHH--HHHcCCcchhh
Confidence 3444434 4579999999999999999999988754 3555665533221100 0000000000 00000000000
Q ss_pred HHHHHHHHHccCCCEEEEcCCCCcccHHHHHHHHh---cCCEEEEEEc
Q 005344 284 HSVMIEAVENHMPETIIIDEIGTELEALAASTIAQ---RGVQLVGTAH 328 (701)
Q Consensus 284 QRV~IArAL~~~PdVIILDEPtsgLD~~a~~~l~e---~GvtVIiTTH 328 (701)
. ...-....++||+||.. .+|......+.. .|..+|++.-
T Consensus 272 ~----~~~~~~~~dvlIIDEas-ml~~~~~~~Ll~~~~~~~~lilvGD 314 (574)
T 3e1s_A 272 H----NHLEPAPYDLLIVDEVS-MMGDALMLSLLAAVPPGARVLLVGD 314 (574)
T ss_dssp C----SSSSCCSCSEEEECCGG-GCCHHHHHHHHTTSCTTCEEEEEEC
T ss_pred h----hhcccccCCEEEEcCcc-CCCHHHHHHHHHhCcCCCEEEEEec
Confidence 0 00001257999999986 788877766643 5777877763
No 301
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.28 E-value=0.0023 Score=60.96 Aligned_cols=27 Identities=44% Similarity=0.677 Sum_probs=24.0
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
..+.+++|+|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l 34 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAEL 34 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 357799999999999999999999873
No 302
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.27 E-value=0.0013 Score=68.57 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
+.+++++|++|+||||++..|++.+.+. |.+|.+++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 7899999999999999999999999865 5667777764
No 303
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.24 E-value=0.0054 Score=67.49 Aligned_cols=114 Identities=14% Similarity=0.085 Sum_probs=63.5
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc---ccccCCCCCCCCCchhh-hccC--CChhHHHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN---EIGGDGDVPHSGIGRAR-RMQV--PNVNMQHSVM 287 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~---EIa~~~~ip~~~ig~~r-r~~v--~s~G~qQRV~ 287 (701)
+.+|+.++|.|+||+|||||+-.++...... |.+|+++.... ++...-.-...++...+ +... .+....+++.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l~ 272 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLS 272 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSSCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHHH
Confidence 6789999999999999999998888766433 77788886431 11000000000111100 0011 2223344555
Q ss_pred HHHHHccCCCEEEEcCCCCcccHHHH--HHH-HhcCCE--EEEEEc
Q 005344 288 IEAVENHMPETIIIDEIGTELEALAA--STI-AQRGVQ--LVGTAH 328 (701)
Q Consensus 288 IArAL~~~PdVIILDEPtsgLD~~a~--~~l-~e~Gvt--VIiTTH 328 (701)
-+........++|.|+|...++-... +.+ .+.|.. +|++-+
T Consensus 273 ~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 273 MAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp HHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 55555556778888887544433221 223 345777 777765
No 304
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.23 E-value=0.0094 Score=76.34 Aligned_cols=111 Identities=16% Similarity=0.170 Sum_probs=65.7
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccC----CCCCCCCCchhhhccCCChhHHHHHHHH
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGD----GDVPHSGIGRARRMQVPNVNMQHSVMIE 289 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~----~~ip~~~ig~~rr~~v~s~G~qQRV~IA 289 (701)
+.+|.++.|.||||+|||||+..++..... .|.+|+|++........ ..+....+ ...+..+. .+-..++
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~-~G~~vlyis~E~s~~~~~a~~lGvd~~~L---~I~~~~~~--e~il~~~ 453 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPIYARKLGVDIDNL---LCSQPDTG--EQALEIC 453 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSCCCHHHHHHTTCCTTTC---EEECCSSH--HHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEcCCCHHHHHHHHcCCCHHHe---EEeCCCCH--HHHHHHH
Confidence 568999999999999999999988876654 35678888875322100 00110000 00111122 2222333
Q ss_pred HH--HccCCCEEEEcCCCCcc----------c----HHHH------HHH----HhcCCEEEEEEcCh
Q 005344 290 AV--ENHMPETIIIDEIGTEL----------E----ALAA------STI----AQRGVQLVGTAHGM 330 (701)
Q Consensus 290 rA--L~~~PdVIILDEPtsgL----------D----~~a~------~~l----~e~GvtVIiTTHd~ 330 (701)
+. ....|++||+|.+..-. | ...+ +.+ ++.|+++|++.|-.
T Consensus 454 ~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~ 520 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred HHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 32 24789999999986432 1 1111 222 57799999999853
No 305
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.21 E-value=0.0026 Score=59.89 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
+.+++|+|++||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999765
No 306
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.19 E-value=0.0025 Score=59.33 Aligned_cols=22 Identities=36% Similarity=0.670 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|++|||||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 307
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.19 E-value=0.0023 Score=60.19 Aligned_cols=27 Identities=48% Similarity=0.545 Sum_probs=23.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
..+.+++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998665
No 308
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.19 E-value=0.0028 Score=67.60 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=33.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcc
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNE 257 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~E 257 (701)
.+.+++|+|++|||||||++.|+..+... |.+|+++|-..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-GSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-CCEEEEEeCCcC
Confidence 56789999999999999999999887654 555777776554
No 309
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.18 E-value=0.0022 Score=62.07 Aligned_cols=36 Identities=28% Similarity=0.212 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
.+++|+|++|||||||+..|++.+.. .|.+|.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~-~g~~v~~ik~ 40 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR-EGWRVGTVKH 40 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh-cCCeeeEEEe
Confidence 47899999999999999999998864 3666766654
No 310
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.16 E-value=0.0018 Score=60.80 Aligned_cols=23 Identities=48% Similarity=0.687 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
+++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999876
No 311
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.13 E-value=0.0022 Score=60.26 Aligned_cols=23 Identities=30% Similarity=0.728 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|||||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999864
No 312
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.12 E-value=0.0029 Score=59.65 Aligned_cols=27 Identities=33% Similarity=0.527 Sum_probs=24.0
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998765
No 313
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.12 E-value=0.0018 Score=65.16 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=24.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
.+.+++|+|+|||||||+.+.|+..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999999874
No 314
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.11 E-value=0.0029 Score=60.22 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=24.5
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLAD 243 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp 243 (701)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 3568999999999999999999987754
No 315
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.10 E-value=0.0031 Score=62.42 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=24.5
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
-..|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3567899999999999999999999855
No 316
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.08 E-value=0.011 Score=58.75 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=59.3
Q ss_pred ccCCEEEEEcCCCCcHH-HHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchh-hhccCCCh-hHHHHHHHHHH
Q 005344 215 EGGGSILVIGPPGVGKT-TLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRA-RRMQVPNV-NMQHSVMIEAV 291 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKT-TLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~-rr~~v~s~-G~qQRV~IArA 291 (701)
..|++..|.||.||||| .||+.+-.... .|++|.++...-...+...+.. .+|.. .-..+.+. ..+.
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~--~~~kvl~~kp~~D~R~~~~i~S-~~g~~~~A~~~~~~~d~~~------- 87 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYAKDTRYSSSFCT-HDRNTMEALPACLLRDVAQ------- 87 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEETTCCCGGGSCCH-HHHHHSEEEEESSGGGGHH-------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEccccCccchhhhhh-ccCCcccceecCCHHHHHH-------
Confidence 35789999999999999 56666655543 3577777742211110011100 01110 00001111 1111
Q ss_pred HccCCCEEEEcCCCCcccHHH-HHHHHhcCCEEEEEEcChhH
Q 005344 292 ENHMPETIIIDEIGTELEALA-ASTIAQRGVQLVGTAHGMTI 332 (701)
Q Consensus 292 L~~~PdVIILDEPtsgLD~~a-~~~l~e~GvtVIiTTHd~~l 332 (701)
...+.++|++||.--=-|... ...+.+.|+.||++..+.++
T Consensus 88 ~~~~~DvIlIDEaQFfk~~ve~~~~L~~~gk~VI~~GL~~DF 129 (195)
T 1w4r_A 88 EALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTF 129 (195)
T ss_dssp HHHTCSEEEESSGGGCTTHHHHHHHHHHTTCEEEEEEESBCT
T ss_pred hccCCCEEEEEchhhhHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 134679999999842222221 25557889999999998775
No 317
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.07 E-value=0.003 Score=61.86 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.+++|+|||||||||++.+|.-.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 589999999999999999997655
No 318
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.06 E-value=0.014 Score=67.65 Aligned_cols=32 Identities=34% Similarity=0.563 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
.++|.||+|+|||++++.|+..+ +..++.++-
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l----~~~~~~i~~ 521 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL----GIELLRFDM 521 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----TCEEEEEEG
T ss_pred EEEEECCCCCcHHHHHHHHHHHh----cCCEEEEec
Confidence 79999999999999999999987 345566654
No 319
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.04 E-value=0.0021 Score=66.21 Aligned_cols=29 Identities=34% Similarity=0.651 Sum_probs=24.6
Q ss_pred cccC--CEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 214 VEGG--GSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 214 I~~G--eiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
+..| ..++|.||||+||||+++.+++.+.
T Consensus 53 l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 53 LKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4444 4599999999999999999999874
No 320
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.04 E-value=0.0031 Score=59.00 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEc
Q 005344 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVD 253 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd 253 (701)
+++|.|++||||||+.+.|+..+.. .|..+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~-~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN-QGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT-TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-cCceEEEEE
Confidence 6899999999999999999987753 355556664
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.02 E-value=0.0034 Score=58.86 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998754
No 322
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.01 E-value=0.0033 Score=63.57 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLs 242 (701)
+++|+||||||||||.+.|++.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999998653
No 323
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.00 E-value=0.0037 Score=59.81 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=24.5
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
..|.+++|.|++||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3577999999999999999999998653
No 324
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.98 E-value=0.0027 Score=65.87 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
+.+++|+|+||||||||++.|+|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3489999999999999999999863
No 325
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.97 E-value=0.0047 Score=72.95 Aligned_cols=71 Identities=21% Similarity=0.376 Sum_probs=47.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHHHHHccC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
....+++.||||||||.|.++||+... ..++.+....-+. ..+......-+-.+..|..+.
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~----~~f~~v~~~~l~s---------------~~vGese~~vr~lF~~Ar~~~ 570 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKGPELLT---------------MWFGESEANVREIFDKARQAA 570 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTT----CEEEECCHHHHHT---------------TTCSSCHHHHHHHHHHHHTTC
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhC----CceEEeccchhhc---------------cccchHHHHHHHHHHHHHHcC
Confidence 345689999999999999999999863 3333333221111 011112233456677888899
Q ss_pred CCEEEEcCCC
Q 005344 296 PETIIIDEIG 305 (701)
Q Consensus 296 PdVIILDEPt 305 (701)
|-||++||+-
T Consensus 571 P~IifiDEiD 580 (806)
T 3cf2_A 571 PCVLFFDELD 580 (806)
T ss_dssp SEEEECSCGG
T ss_pred Cceeechhhh
Confidence 9999999985
No 326
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.95 E-value=0.0039 Score=60.58 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHh
Q 005344 217 GGSILVIGPPGVGKTTLIREIAR 239 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaG 239 (701)
+-+++|.|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999997
No 327
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.94 E-value=0.0034 Score=59.36 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.0
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
..+.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999865
No 328
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.91 E-value=0.0083 Score=70.83 Aligned_cols=37 Identities=41% Similarity=0.712 Sum_probs=29.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
..++|.||+|+||||+++.|+..+... +..++.++..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~-~~~~i~i~~~ 625 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRIDMT 625 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS-GGGEEEECTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC-CCcEEEEech
Confidence 489999999999999999999988543 3445666643
No 329
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.91 E-value=0.0022 Score=69.23 Aligned_cols=29 Identities=28% Similarity=0.731 Sum_probs=25.8
Q ss_pred cccCCE--EEEEcCCCCcHHHHHHHHHhcCC
Q 005344 214 VEGGGS--ILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 214 I~~Gei--ilIIGPNGSGKTTLLR~IaGlLs 242 (701)
+.+|+. ++|+|++||||||+.++|++.+.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 667766 99999999999999999999874
No 330
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.91 E-value=0.0016 Score=62.46 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEc
Q 005344 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIVD 253 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd 253 (701)
+++|.|++||||||+++.|+..+... |..|.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~-g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA-GRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 68999999999999999999988643 44444443
No 331
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.91 E-value=0.0084 Score=60.65 Aligned_cols=24 Identities=38% Similarity=0.665 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLs 242 (701)
.++|.||+|+||||+++.++..+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 489999999999999999998763
No 332
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.90 E-value=0.0042 Score=59.46 Aligned_cols=28 Identities=29% Similarity=0.429 Sum_probs=24.6
Q ss_pred ccCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 215 EGGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
.+|.+++|.|++||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3577999999999999999999998664
No 333
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.87 E-value=0.0031 Score=58.96 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=19.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
++.+++|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999987653
No 334
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.86 E-value=0.017 Score=60.04 Aligned_cols=39 Identities=21% Similarity=0.390 Sum_probs=28.8
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVD 253 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd 253 (701)
...+..++|.|++|+|||++++.|+...... +..++.++
T Consensus 22 a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~-~~~~v~v~ 60 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELVARALHACSARS-DRPLVTLN 60 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHHHHHHHHHSSCS-SSCCCEEE
T ss_pred hCCCCcEEEECCCCchHHHHHHHHHHhCccc-CCCeEEEe
Confidence 3456789999999999999999999876432 23334444
No 335
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.79 E-value=0.0047 Score=60.54 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.+.+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999765
No 336
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.78 E-value=0.0053 Score=59.80 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=23.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999865
No 337
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.77 E-value=0.005 Score=58.38 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhc
Q 005344 217 GGSILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGl 240 (701)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999985
No 338
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.73 E-value=0.0056 Score=56.87 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
++++|.|++||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998765
No 339
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.73 E-value=0.0061 Score=70.80 Aligned_cols=95 Identities=21% Similarity=0.355 Sum_probs=50.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCC------CcEEEEEcCCcccccCCCCCCCCCchhhhccCCChhHHHHHHHH
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDH------MKRVVIVDTSNEIGGDGDVPHSGIGRARRMQVPNVNMQHSVMIE 289 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~------GkrViiVd~~~EIa~~~~ip~~~ig~~rr~~v~s~G~qQRV~IA 289 (701)
...+++|+||||+||||+.+.|+..+.... +..++.++- +.. . ......+-+-.+.
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------------g~~-~--~G~~e~~l~~~~~ 261 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------------GTK-Y--RGEFEDRLKKVMD 261 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------ccc-c--cchHHHHHHHHHH
Confidence 456899999999999999999999873211 222221111 000 0 0000112233445
Q ss_pred HHHccCCCEEEEcCCCCcccHHHH--HHHHhcCCEEEEEEcChh
Q 005344 290 AVENHMPETIIIDEIGTELEALAA--STIAQRGVQLVGTAHGMT 331 (701)
Q Consensus 290 rAL~~~PdVIILDEPtsgLD~~a~--~~l~e~GvtVIiTTHd~~ 331 (701)
.+....|-+|++| ...|.... ..+....+.+|++|....
T Consensus 262 ~~~~~~~~iLfiD---~~~~~~~~L~~~l~~~~v~~I~at~~~~ 302 (758)
T 3pxi_A 262 EIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDE 302 (758)
T ss_dssp HHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTT
T ss_pred HHHhcCCEEEEEc---CchhHHHHHHHHHhcCCEEEEeCCChHH
Confidence 5566789999999 34454332 112344578888876544
No 340
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.72 E-value=0.006 Score=60.45 Aligned_cols=37 Identities=32% Similarity=0.478 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
.-++++.|..|+|||||+..|+..+. .|++|.+++..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~--~g~~v~vvd~D 50 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYVNLD 50 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEEECC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 35789999999999999999998887 57888888854
No 341
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.72 E-value=0.039 Score=56.25 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=58.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccc-cCCCCCCCCCchhhhccCCChhHHHHHHHHHHHcc
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIG-GDGDVPHSGIGRARRMQVPNVNMQHSVMIEAVENH 294 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa-~~~~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~ 294 (701)
.|.+..+.|+-||||||.|--.+.-.. ..|++|.++.-..... +..-..+.++.. ....+.+... .+.. ..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-~~g~kvli~kp~~D~Ryg~~i~sr~G~~~-~a~~i~~~~d----i~~~--~~ 89 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYAKDTRYSSSFCTHDRNTM-EALPACLLRD----VAQE--AL 89 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEEEETTCCCC-----------C-EEEEESSGGG----GHHH--HT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEeecCCccchHHHHhhcCCee-EEEecCCHHH----HHHH--hc
Confidence 588999999999999976654444333 3567777664211110 111111111110 0011111111 1111 26
Q ss_pred CCCEEEEcCCCCcccHHHH-HHHHhcCCEEEEEEcChh
Q 005344 295 MPETIIIDEIGTELEALAA-STIAQRGVQLVGTAHGMT 331 (701)
Q Consensus 295 ~PdVIILDEPtsgLD~~a~-~~l~e~GvtVIiTTHd~~ 331 (701)
..++|++||.---.+.... +.+.+.|+.||++.++.+
T Consensus 90 ~~dvViIDEaQF~~~v~el~~~l~~~gi~VI~~GL~~D 127 (234)
T 2orv_A 90 GVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGT 127 (234)
T ss_dssp TCSEEEESSGGGCTTHHHHHHHHHHTTCEEEEECCSBC
T ss_pred cCCEEEEEchhhhhhHHHHHHHHHhCCCEEEEEecccc
Confidence 7899999999655453332 445778999999999854
No 342
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.69 E-value=0.0062 Score=58.36 Aligned_cols=25 Identities=40% Similarity=0.684 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
+-+++|+|++||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 343
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.65 E-value=0.0057 Score=59.06 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 344
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.64 E-value=0.0058 Score=59.14 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 345
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.64 E-value=0.0048 Score=63.74 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
+..++|.|||||||||+.+.|+..+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56889999999999999999987653
No 346
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.63 E-value=0.006 Score=57.57 Aligned_cols=33 Identities=33% Similarity=0.432 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEE
Q 005344 219 SILVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiV 252 (701)
+++|.|++||||||+.+.|+..+.. .|..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~-~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK-RGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-CCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEe
Confidence 5899999999999999999987743 35544443
No 347
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.63 E-value=0.0094 Score=61.83 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=34.0
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhc--CCC---------CCC----cEEEEEcCCc
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARM--LAD---------DHM----KRVVIVDTSN 256 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGl--Lsp---------~~G----krViiVd~~~ 256 (701)
+..|+++.|.|+||+|||||+..++.. +.. ..| .+|+|++...
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~ 152 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG 152 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC
Confidence 778999999999999999999988864 222 234 6788888753
No 348
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.61 E-value=0.0062 Score=57.09 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLs 242 (701)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 349
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.61 E-value=0.0059 Score=57.07 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998755
No 350
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.60 E-value=0.0051 Score=58.56 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999865
No 351
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.59 E-value=0.0029 Score=65.38 Aligned_cols=29 Identities=34% Similarity=0.642 Sum_probs=25.5
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
+..|..++|.||||+|||||++.|+..+.
T Consensus 43 l~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 43 ICTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 44577999999999999999999999874
No 352
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.57 E-value=0.0058 Score=61.84 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 353
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.57 E-value=0.007 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|||||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998753
No 354
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.56 E-value=0.0072 Score=54.25 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998643
No 355
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.56 E-value=0.0067 Score=54.24 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++++|++|||||||++.+++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998754
No 356
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.0071 Score=56.62 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
-.++|+|++|||||||++.+++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999865
No 357
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.53 E-value=0.0059 Score=56.52 Aligned_cols=24 Identities=46% Similarity=0.721 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999765
No 358
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.53 E-value=0.0065 Score=55.42 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 57999999999999999998753
No 359
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.52 E-value=0.0076 Score=54.16 Aligned_cols=23 Identities=26% Similarity=0.689 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 360
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.0076 Score=54.50 Aligned_cols=22 Identities=32% Similarity=0.603 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|++|||||||++.+++-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
No 361
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.51 E-value=0.0076 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|||||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57999999999999999998753
No 362
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.50 E-value=0.0072 Score=57.77 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998765
No 363
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.49 E-value=0.0068 Score=59.37 Aligned_cols=24 Identities=33% Similarity=0.714 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLs 242 (701)
.++|+||+|||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 368999999999999999987654
No 364
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.48 E-value=0.0058 Score=61.99 Aligned_cols=25 Identities=40% Similarity=0.634 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999765
No 365
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.47 E-value=0.0063 Score=59.33 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
+.+++|+|++||||||+.+.|+..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999997653
No 366
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.46 E-value=0.0062 Score=57.29 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998865
No 367
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.45 E-value=0.0083 Score=54.30 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998865
No 368
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.45 E-value=0.0079 Score=55.49 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999865
No 369
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.42 E-value=0.0075 Score=60.91 Aligned_cols=38 Identities=29% Similarity=0.554 Sum_probs=28.1
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
.+.+++|.|++||||||+.+.|+..+.. .|..+++++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~-~g~~~i~~~~ 40 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSK-NNIDVIVLGS 40 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEECT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHh-CCCEEEEECc
Confidence 3568999999999999999999987542 2443444554
No 370
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.41 E-value=0.0079 Score=60.28 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=24.3
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
+.+..++.|+|||||||+|..+.|+..+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556789999999999999999998765
No 371
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.40 E-value=0.0087 Score=54.02 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|||||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 372
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.38 E-value=0.008 Score=63.70 Aligned_cols=37 Identities=30% Similarity=0.507 Sum_probs=31.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
-.++|+|++|+|||||+..|++.+.. .|++|.+++..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~-~g~kV~vi~~D 116 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIE-RGHRVAVLAVD 116 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh-CCCceEEEecC
Confidence 47899999999999999999988764 47778877654
No 373
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.38 E-value=0.0077 Score=54.51 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+--
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 374
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.36 E-value=0.0091 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|||||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998753
No 375
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.36 E-value=0.0062 Score=55.19 Aligned_cols=23 Identities=39% Similarity=0.764 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+++..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999997643
No 376
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.36 E-value=0.0092 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|||||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998753
No 377
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.36 E-value=0.0079 Score=54.65 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998654
No 378
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.35 E-value=0.0092 Score=54.61 Aligned_cols=23 Identities=30% Similarity=0.639 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57999999999999999998754
No 379
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.34 E-value=0.0048 Score=68.66 Aligned_cols=27 Identities=26% Similarity=0.565 Sum_probs=23.8
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
+.+| +.+|+|+|||||||||.+|..++
T Consensus 58 f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp CCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 4556 99999999999999999997774
No 380
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.34 E-value=0.0093 Score=53.78 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|++|||||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
No 381
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.29 E-value=0.0073 Score=55.23 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|++|||||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 382
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.27 E-value=0.0092 Score=55.25 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+++-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999854
No 383
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.27 E-value=0.0093 Score=53.81 Aligned_cols=22 Identities=23% Similarity=0.578 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|++|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
No 384
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.25 E-value=0.0097 Score=54.40 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999999876
No 385
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.24 E-value=0.016 Score=66.16 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=29.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCC---CCCCcEEEEEcCC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLA---DDHMKRVVIVDTS 255 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLs---p~~GkrViiVd~~ 255 (701)
.+.+++|.|++|+||||++..++..+. ...|.+|.++-.+
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APT 205 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPT 205 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCC
Confidence 577999999999999999998877653 1335566665443
No 386
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.23 E-value=0.01 Score=57.92 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
+-+++|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998865
No 387
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.21 E-value=0.012 Score=53.88 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.3
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
+.-.++|+|++|||||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999998743
No 388
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.20 E-value=0.011 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999999743
No 389
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.20 E-value=0.011 Score=56.77 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=27.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
-.++|+|++|||||||++.|++.+... .++.+++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~--~~~~~i~~ 65 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE--VKIGAMLG 65 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT--SCEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEec
Confidence 478999999999999999999876432 45566653
No 390
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.19 E-value=0.0092 Score=55.78 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 005344 218 GSILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGl 240 (701)
-.++|+|++|+|||||++.+.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999875
No 391
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.19 E-value=0.011 Score=54.98 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLAD 243 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLsp 243 (701)
.++|+|++|+|||||++.+.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5799999999999999999987654
No 392
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.17 E-value=0.01 Score=54.76 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57999999999999999998754
No 393
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.17 E-value=0.011 Score=56.12 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 005344 218 GSILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGl 240 (701)
-.++|+|++|||||||++.+++-
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999873
No 394
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.15 E-value=0.008 Score=60.57 Aligned_cols=25 Identities=48% Similarity=0.865 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
+..++|.||+|+|||||++.|+..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999987
No 395
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.15 E-value=0.011 Score=58.28 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 396
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.13 E-value=0.01 Score=55.14 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
-.++|+|++|||||||++.+.+.-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 378999999999999999998764
No 397
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.12 E-value=0.0086 Score=62.33 Aligned_cols=27 Identities=37% Similarity=0.724 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLAD 243 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp 243 (701)
+..++|.||+|+|||||++.++..+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999998763
No 398
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.10 E-value=0.012 Score=53.38 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 005344 218 GSILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGl 240 (701)
-.++|+|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999764
No 399
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.10 E-value=0.012 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|||||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 57999999999999999998753
No 400
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.10 E-value=0.01 Score=57.54 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
No 401
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.09 E-value=0.0097 Score=64.79 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|+||||||||++.|+|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999975
No 402
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.08 E-value=0.017 Score=60.19 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=28.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCC------C-CcEEEEEc
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADD------H-MKRVVIVD 253 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~------~-GkrViiVd 253 (701)
+..++|.||+|+|||||++.++..+... . +..+++++
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 4589999999999999999999876321 2 45566665
No 403
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.08 E-value=0.012 Score=55.15 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998854
No 404
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.07 E-value=0.011 Score=58.41 Aligned_cols=23 Identities=35% Similarity=0.723 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
+++|+|||||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999765
No 405
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.07 E-value=0.011 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|||||||++.+++-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998643
No 406
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.07 E-value=0.012 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|||||||++.+++-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 57999999999999999998743
No 407
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.05 E-value=0.013 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
No 408
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.05 E-value=0.013 Score=57.80 Aligned_cols=26 Identities=35% Similarity=0.679 Sum_probs=23.2
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.+.+++|+|++||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999765
No 409
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.04 E-value=0.011 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998753
No 410
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.03 E-value=0.012 Score=53.15 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|++|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 411
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.03 E-value=0.0097 Score=64.91 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=25.4
Q ss_pred eccccccCCEEEEEcCCCCcHHHHHHHHHhc
Q 005344 210 ICDLVEGGGSILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 210 L~dlI~~GeiilIIGPNGSGKTTLLR~IaGl 240 (701)
+.+.+..+..++|+|+||+|||||++.|++.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3334667888999999999999999999976
No 412
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.03 E-value=0.024 Score=56.34 Aligned_cols=126 Identities=16% Similarity=0.027 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCc------ccccCCCCC--CCCCchhhhccCCC-------hh
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTSN------EIGGDGDVP--HSGIGRARRMQVPN-------VN 281 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~------EIa~~~~ip--~~~ig~~rr~~v~s-------~G 281 (701)
...+.|.++||.||||+.-.++-- ....|.+|.++--.. |......+. ....+. .+.... ..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalR-A~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~--gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAAR-AVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMAT--GFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHH-HHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCT--TCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH-HHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEccc--ccccCCCCcHHHHHH
Confidence 458889999999999998776533 335688888882211 110000110 000010 000111 01
Q ss_pred HHHHHHHHHHHc--cCCCEEEEcCCCCc-----ccHHHHHHH-Hh--cCCEEEEEEcCh-hHHHHhcCcEEEEeC
Q 005344 282 MQHSVMIEAVEN--HMPETIIIDEIGTE-----LEALAASTI-AQ--RGVQLVGTAHGM-TIDNIVKNPSLQILV 345 (701)
Q Consensus 282 ~qQRV~IArAL~--~~PdVIILDEPtsg-----LD~~a~~~l-~e--~GvtVIiTTHd~-~l~~~l~drvlvl~~ 345 (701)
.+.....++-.. ...|+|||||++.. ++......+ .+ ....||+|+.+. ..+-.++|-+-.|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 122222233333 46899999999653 555554333 32 478899999754 455567776655543
No 413
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.99 E-value=0.013 Score=53.91 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998753
No 414
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.98 E-value=0.013 Score=56.15 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
-.++|+|++|+|||||++.+++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999865
No 415
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=94.98 E-value=0.072 Score=60.72 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=37.4
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcC----CCCCCcEEEEEcCCc-ccccCCCCCCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARML----ADDHMKRVVIVDTSN-EIGGDGDVPHS 267 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlL----sp~~GkrViiVd~~~-EIa~~~~ip~~ 267 (701)
+.+.-+++|.|.+|||||++|+.|+.-+ .|+ .-+++++|-.. ++..+..+||.
T Consensus 211 L~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~-ev~lilIDpKg~eLs~~~~lPHl 268 (574)
T 2iut_A 211 LAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPS-EARLIMIDPKMLELSIYEGIPHL 268 (574)
T ss_dssp GGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTT-TEEEEEECSSSHHHHTTTTCTTB
T ss_pred hhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCc-ceEEEEeCCChhhhHhhcCCCcc
Confidence 3456789999999999999999866533 232 34678888764 55555566664
No 416
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.014 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 67999999999999999998754
No 417
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.96 E-value=0.012 Score=58.77 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=27.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCC----CCcEEEEEcCC
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADD----HMKRVVIVDTS 255 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~----~GkrViiVd~~ 255 (701)
-+++|.|++||||||+.+.|+..+... .+..+.+++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D 64 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD 64 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecC
Confidence 378999999999999999999865421 13345555543
No 418
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.95 E-value=0.048 Score=55.13 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=56.6
Q ss_pred ccCCEEEEEcCCCCcHHH-HHHHHHhcCCCCCCcEEEEEcCCccc-ccCCC-CCCCCCchhhhccCCChhHHHHHHHHHH
Q 005344 215 EGGGSILVIGPPGVGKTT-LIREIARMLADDHMKRVVIVDTSNEI-GGDGD-VPHSGIGRARRMQVPNVNMQHSVMIEAV 291 (701)
Q Consensus 215 ~~GeiilIIGPNGSGKTT-LLR~IaGlLsp~~GkrViiVd~~~EI-a~~~~-ip~~~ig~~rr~~v~s~G~qQRV~IArA 291 (701)
..|.+.+|.|+-|||||| ||+.+-+... .|.++.++.-.... .+... ..+.++... -..+.+... |...
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~--~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~-a~~v~~~~d-----i~~~ 97 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIY--AKQKVVVFKPAIDDRYHKEKVVSHNGNAIE-AINISKASE-----IMTH 97 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC-----------CBTTBCCE-EEEESSGGG-----GGGS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH--cCCceEEEEeccCCcchhhhHHHhcCCcee-eEEeCCHHH-----HHHH
Confidence 457899999999999999 7788766542 35666555221110 00000 111111110 000111100 0001
Q ss_pred HccCCCEEEEcCCCCcccHH---HHHHHHhcCCEEEEEEcChhH
Q 005344 292 ENHMPETIIIDEIGTELEAL---AASTIAQRGVQLVGTAHGMTI 332 (701)
Q Consensus 292 L~~~PdVIILDEPtsgLD~~---a~~~l~e~GvtVIiTTHd~~l 332 (701)
+..+.++|++||.- -+|.. ....+++.|+.||+..=+.++
T Consensus 98 i~~~~dvV~IDEaQ-Ff~~~~v~~l~~la~~gi~Vi~~GLd~DF 140 (219)
T 3e2i_A 98 DLTNVDVIGIDEVQ-FFDDEIVSIVEKLSADGHRVIVAGLDMDF 140 (219)
T ss_dssp CCTTCSEEEECCGG-GSCTHHHHHHHHHHHTTCEEEEEEESBCT
T ss_pred HhcCCCEEEEechh-cCCHHHHHHHHHHHHCCCEEEEeeccccc
Confidence 13578999999984 23322 234556789999988865544
No 419
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.94 E-value=0.053 Score=58.02 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=23.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
++.+++|+||+|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 345899999999999999999998763
No 420
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.94 E-value=0.0095 Score=55.86 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 005344 218 GSILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGl 240 (701)
-.++|+|++|+|||||++.+++.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 421
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.94 E-value=0.014 Score=54.44 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|.+|||||||++.+++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 67999999999999999998753
No 422
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.93 E-value=0.011 Score=62.12 Aligned_cols=26 Identities=54% Similarity=0.919 Sum_probs=23.6
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.+..++|.|||||||||+.+.|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35688999999999999999999987
No 423
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.91 E-value=0.014 Score=58.54 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.+-.++|+||+||||||+.+.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 424
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.90 E-value=0.016 Score=61.27 Aligned_cols=26 Identities=42% Similarity=0.760 Sum_probs=23.4
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
....++|.||+|+||||+++.|+..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999987
No 425
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.89 E-value=0.013 Score=54.25 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|||||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
No 426
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.85 E-value=0.013 Score=60.09 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|+||||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999863
No 427
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.85 E-value=0.031 Score=53.02 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=53.1
Q ss_pred EEEEE-cCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCCcccccCC--CCCCCCCchhhhccCCChhHHHHHHHHHHHccC
Q 005344 219 SILVI-GPPGVGKTTLIREIARMLADDHMKRVVIVDTSNEIGGDG--DVPHSGIGRARRMQVPNVNMQHSVMIEAVENHM 295 (701)
Q Consensus 219 iilII-GPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~~EIa~~~--~ip~~~ig~~rr~~v~s~G~qQRV~IArAL~~~ 295 (701)
+++|. +..|+||||+.-.|+..+.. .|++|.++|....-.... .....+ +.+...+..+...+...+..+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~-~g~~vlliD~D~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~l~~l~~~ 75 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSR-SGYNIAVVDTDPQMSLTNWSKAGKAA------FDVFTAASEKDVYGIRKDLAD 75 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHTTSCCS------SEEEECCSHHHHHTHHHHTTT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHH-CCCeEEEEECCCCCCHHHHHhcCCCC------CcEEecCcHHHHHHHHHhcCC
Confidence 45666 66789999999999999875 688999998753211000 000000 111111111112222345567
Q ss_pred CCEEEEcCCCCcccHHHHHHHHhcCC
Q 005344 296 PETIIIDEIGTELEALAASTIAQRGV 321 (701)
Q Consensus 296 PdVIILDEPtsgLD~~a~~~l~e~Gv 321 (701)
.|++|+|=|.. ++......+.....
T Consensus 76 yD~viiD~~~~-~~~~~~~~l~~ad~ 100 (206)
T 4dzz_A 76 YDFAIVDGAGS-LSVITSAAVMVSDL 100 (206)
T ss_dssp SSEEEEECCSS-SSHHHHHHHHHCSE
T ss_pred CCEEEEECCCC-CCHHHHHHHHHCCE
Confidence 89999998874 35544444433333
No 428
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.83 E-value=0.0091 Score=66.88 Aligned_cols=29 Identities=28% Similarity=0.669 Sum_probs=26.1
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
+..|..++|.||||+|||+|++.|+..+.
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999874
No 429
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.81 E-value=0.0058 Score=67.17 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=32.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDTS 255 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~~ 255 (701)
.+++|+|++|+||||++..|++.+... |++|.+++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~-G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecc
Confidence 589999999999999999999988744 7788888765
No 430
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.81 E-value=0.014 Score=54.34 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|||||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999999754
No 431
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.81 E-value=0.016 Score=54.56 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57999999999999999998653
No 432
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.80 E-value=0.013 Score=62.95 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLs 242 (701)
.++|+|+||||||||++.|+|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 489999999999999999998764
No 433
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.79 E-value=0.0087 Score=55.25 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHh
Q 005344 217 GGSILVIGPPGVGKTTLIREIAR 239 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaG 239 (701)
.-.++|+|++|||||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44789999999999999998863
No 434
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.78 E-value=0.016 Score=54.62 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
No 435
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.77 E-value=0.016 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57999999999999999998653
No 436
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.76 E-value=0.015 Score=54.39 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+++.-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 67999999999999999998754
No 437
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.76 E-value=0.026 Score=56.31 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=30.3
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
...+..++|.||+|+|||||++.|+...... +..++.++-
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-~~~~~~v~~ 65 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHYLSSRW-QGPFISLNC 65 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-TSCEEEEEG
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-CCCeEEEec
Confidence 3456789999999999999999999887543 334555553
No 438
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.75 E-value=0.0099 Score=56.80 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=23.9
Q ss_pred ceeccc-cc-cCCEEEEEcCCCCcHHHHHHHHHh
Q 005344 208 EIICDL-VE-GGGSILVIGPPGVGKTTLIREIAR 239 (701)
Q Consensus 208 ~~L~dl-I~-~GeiilIIGPNGSGKTTLLR~IaG 239 (701)
.+++++ +. +.-.++|+|++|||||||++.+++
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 455555 21 223689999999999999999975
No 439
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.74 E-value=0.015 Score=54.39 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+++-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 440
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.74 E-value=0.017 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 441
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.73 E-value=0.097 Score=54.68 Aligned_cols=30 Identities=30% Similarity=0.575 Sum_probs=24.7
Q ss_pred cccCC---EEEEEcCCCCcHHHHHHHHHhcCCC
Q 005344 214 VEGGG---SILVIGPPGVGKTTLIREIARMLAD 243 (701)
Q Consensus 214 I~~Ge---iilIIGPNGSGKTTLLR~IaGlLsp 243 (701)
+..|. .+++.||+|+||||+.+.++..+..
T Consensus 18 i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 18 YQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp HHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 44553 5899999999999999999987643
No 442
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.73 E-value=0.014 Score=62.05 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh
Q 005344 218 GSILVIGPPGVGKTTLIREIAR 239 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaG 239 (701)
.+++|+|+|||||||+|-+|.=
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999974
No 443
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.72 E-value=0.016 Score=58.97 Aligned_cols=23 Identities=48% Similarity=0.647 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 005344 218 GSILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGl 240 (701)
.+++|.|+|||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999974
No 444
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.71 E-value=0.017 Score=54.08 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6899999999999999999874
No 445
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.67 E-value=0.017 Score=54.56 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|++|||||||++.+++-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999877654
No 446
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.64 E-value=0.017 Score=54.35 Aligned_cols=23 Identities=22% Similarity=0.535 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+++-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 447
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.63 E-value=0.018 Score=53.18 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 005344 219 SILVIGPPGVGKTTLIREIAR 239 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaG 239 (701)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 579999999999999999984
No 448
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.63 E-value=0.017 Score=54.60 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 449
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.63 E-value=0.017 Score=53.73 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.-.++|+|++|||||||++.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998744
No 450
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.61 E-value=0.019 Score=52.73 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998643
No 451
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.59 E-value=0.019 Score=53.31 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 67999999999999999998754
No 452
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.59 E-value=0.018 Score=57.80 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|.+|+|||||++.|.|.-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999864
No 453
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.55 E-value=0.017 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 57999999999999999999754
No 454
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.54 E-value=0.02 Score=53.52 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|||||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 67999999999999999998643
No 455
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.50 E-value=0.019 Score=54.46 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68999999999999999999754
No 456
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.50 E-value=0.019 Score=54.42 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
-.++|+|++|+|||||++.+++--
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
No 457
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.50 E-value=0.021 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 458
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.49 E-value=0.019 Score=57.24 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
-.++|+|++|||||||++.|++.-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999753
No 459
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.49 E-value=0.02 Score=55.98 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
-+++|+|++||||||+.+.|+..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999763
No 460
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.48 E-value=0.019 Score=54.63 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|.+|+|||||++.+++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 461
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.48 E-value=0.02 Score=54.05 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|++|||||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 462
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.46 E-value=0.021 Score=53.56 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
-.++|+|++|+|||||++.+++-.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998743
No 463
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.46 E-value=0.023 Score=54.85 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=25.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEc
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVD 253 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd 253 (701)
-.++|+|.+|||||||++.++...... .++.++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~--~~~~~i~ 72 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK--YKIACIA 72 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT--CCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEE
Confidence 478999999999999999998875433 3344443
No 464
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.45 E-value=0.019 Score=58.28 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|.+|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999863
No 465
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.45 E-value=0.015 Score=58.58 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=24.3
Q ss_pred cccCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 214 VEGGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 214 I~~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
+.+...++|.||||+||||+..+|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445579999999999999999999987
No 466
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.44 E-value=0.015 Score=58.80 Aligned_cols=29 Identities=52% Similarity=0.786 Sum_probs=24.3
Q ss_pred cccCC--EEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 214 VEGGG--SILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 214 I~~Ge--iilIIGPNGSGKTTLLR~IaGlLs 242 (701)
+..|. .++|.||+|+||||+++.++..+.
T Consensus 41 l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 41 VKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 44443 699999999999999999998763
No 467
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.43 E-value=0.019 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 468
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.43 E-value=0.016 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|++|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
No 469
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.42 E-value=0.022 Score=53.50 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 67999999999999999998854
No 470
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.41 E-value=0.016 Score=58.94 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=25.2
Q ss_pred ccccCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 213 LVEGGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 213 lI~~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
.+..|.+++|.||.|+|||||++.++...
T Consensus 27 ~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 27 SLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 35557899999999999999999998765
No 471
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.40 E-value=0.022 Score=53.93 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+++-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998754
No 472
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.38 E-value=0.019 Score=59.58 Aligned_cols=23 Identities=35% Similarity=0.754 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 005344 218 GSILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGl 240 (701)
..++|+|.+|||||||++.|.|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999985
No 473
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.38 E-value=0.014 Score=55.72 Aligned_cols=22 Identities=32% Similarity=0.706 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|++|||||||++.+++.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6799999999999999999764
No 474
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.37 E-value=0.021 Score=53.26 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh
Q 005344 218 GSILVIGPPGVGKTTLIREIAR 239 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaG 239 (701)
-.++|+|++|||||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999985
No 475
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.37 E-value=0.02 Score=58.80 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHh
Q 005344 218 GSILVIGPPGVGKTTLIREIAR 239 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaG 239 (701)
-+++|.|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 476
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.31 E-value=0.021 Score=55.21 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3478999999999999999999865
No 477
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.31 E-value=0.022 Score=59.30 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|.+|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 478
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.30 E-value=0.019 Score=53.73 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
-.++|+|.+|||||||++.+.+-.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998743
No 479
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.28 E-value=0.023 Score=53.50 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+++-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 67999999999999999888643
No 480
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.25 E-value=0.02 Score=53.26 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 005344 218 GSILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGl 240 (701)
-.++|+|++|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 481
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.25 E-value=0.022 Score=54.20 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|++|||||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6799999999999999999864
No 482
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.24 E-value=0.024 Score=57.50 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|.+|||||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999853
No 483
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.23 E-value=0.028 Score=55.82 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=28.9
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEE
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIV 252 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiV 252 (701)
.|.++.|.|++||||||+++.|+..+.. .|..|+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcccc
Confidence 4778999999999999999999988864 35545444
No 484
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.22 E-value=0.017 Score=54.12 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 218 GSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlL 241 (701)
-.++|+|++|||||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998764
No 485
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.22 E-value=0.024 Score=54.16 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|||||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 486
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.22 E-value=0.02 Score=63.26 Aligned_cols=25 Identities=48% Similarity=0.882 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
..++|+|||||||||+.+.|++.+.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999984
No 487
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.19 E-value=0.022 Score=54.85 Aligned_cols=23 Identities=48% Similarity=0.801 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+++-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 67999999999999999988754
No 488
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.18 E-value=0.016 Score=64.67 Aligned_cols=35 Identities=40% Similarity=0.582 Sum_probs=28.9
Q ss_pred eeccc--cccCCEEEEEcCCCCcHHHHHHHHHhcCCC
Q 005344 209 IICDL--VEGGGSILVIGPPGVGKTTLIREIARMLAD 243 (701)
Q Consensus 209 ~L~dl--I~~GeiilIIGPNGSGKTTLLR~IaGlLsp 243 (701)
+++.+ +-+|+.++|+|++|+|||||++.|+.....
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 44444 567999999999999999999999987653
No 489
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.17 E-value=0.013 Score=60.40 Aligned_cols=26 Identities=42% Similarity=0.740 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
+..++|.||+|+|||||++.|+..+.
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 45699999999999999999999875
No 490
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.16 E-value=0.021 Score=53.84 Aligned_cols=22 Identities=36% Similarity=0.738 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 005344 219 SILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGl 240 (701)
.++|+|++|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 491
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.14 E-value=0.026 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 005344 218 GSILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGl 240 (701)
-.++|+|++|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 492
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.13 E-value=0.026 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|||||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999753
No 493
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.10 E-value=0.024 Score=54.72 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+++-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999999854
No 494
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.10 E-value=0.026 Score=61.26 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.7
Q ss_pred cCCEEEEEcCCCCcHHHHHHHHHhcC
Q 005344 216 GGGSILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 216 ~GeiilIIGPNGSGKTTLLR~IaGlL 241 (701)
...+++|+|+|||||||+.+.|+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998754
No 495
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.10 E-value=0.025 Score=57.70 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 496
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.08 E-value=0.02 Score=61.07 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 219 SILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlLs 242 (701)
.++|+|++|+|||||++.|.+...
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 368999999999999999987643
No 497
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.08 E-value=0.028 Score=53.60 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcC
Q 005344 219 SILVIGPPGVGKTTLIREIARML 241 (701)
Q Consensus 219 iilIIGPNGSGKTTLLR~IaGlL 241 (701)
.++|+|++|+|||||++.+++-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 498
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.07 E-value=0.023 Score=55.34 Aligned_cols=23 Identities=30% Similarity=0.704 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhc
Q 005344 218 GSILVIGPPGVGKTTLIREIARM 240 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGl 240 (701)
-.++|+|++|+|||||++.+++.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 499
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.03 E-value=0.027 Score=59.82 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=22.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHhcCC
Q 005344 218 GSILVIGPPGVGKTTLIREIARMLA 242 (701)
Q Consensus 218 eiilIIGPNGSGKTTLLR~IaGlLs 242 (701)
..++|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999998763
No 500
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.02 E-value=0.022 Score=63.87 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHhcCCCCCCcEEEEEcC
Q 005344 217 GGSILVIGPPGVGKTTLIREIARMLADDHMKRVVIVDT 254 (701)
Q Consensus 217 GeiilIIGPNGSGKTTLLR~IaGlLsp~~GkrViiVd~ 254 (701)
..+++|+|++|||||||+..|+..+.. .|++|.+++.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~-~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQR-KGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEec
Confidence 358899999999999999999988764 3788888875
Done!