Query 005345
Match_columns 701
No_of_seqs 41 out of 43
Neff 2.6
Searched_HMMs 46136
Date Thu Mar 28 22:00:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10358 NT-C2: N-terminal C2 99.7 9.9E-16 2.1E-20 135.5 12.8 131 12-166 3-142 (143)
2 cd00275 C2_PLC_like C2 domain 94.9 0.44 9.6E-06 41.2 10.9 123 16-158 2-127 (128)
3 cd04013 C2_SynGAP_like C2 doma 94.1 0.73 1.6E-05 43.9 11.4 107 40-163 28-143 (146)
4 cd08400 C2_Ras_p21A1 C2 domain 93.5 1.3 2.7E-05 39.8 11.1 119 13-160 3-124 (126)
5 cd04042 C2A_MCTP_PRT C2 domain 91.0 2.7 5.8E-05 36.9 10.0 118 17-158 1-119 (121)
6 cd08682 C2_Rab11-FIP_classI C2 91.0 2.2 4.8E-05 37.7 9.5 118 18-156 1-125 (126)
7 cd04019 C2C_MCTP_PRT_plant C2 89.7 3.6 7.7E-05 38.7 10.2 123 18-159 2-132 (150)
8 cd04043 C2_Munc13_fungal C2 do 89.7 5.3 0.00011 35.0 10.6 118 18-159 3-121 (126)
9 cd04033 C2_NEDD4_NEDD4L C2 dom 89.0 3.8 8.1E-05 36.2 9.3 126 18-159 2-133 (133)
10 cd08690 C2_Freud-1 C2 domain f 87.7 6.5 0.00014 38.0 10.6 132 18-166 4-144 (155)
11 cd08379 C2D_MCTP_PRT_plant C2 87.6 5.4 0.00012 36.9 9.7 106 19-143 3-113 (126)
12 cd04015 C2_plant_PLD C2 domain 86.9 2.6 5.5E-05 39.8 7.4 73 76-158 82-157 (158)
13 cd04022 C2A_MCTP_PRT_plant C2 86.1 9.6 0.00021 33.8 10.2 119 19-158 3-125 (127)
14 cd04036 C2_cPLA2 C2 domain pre 85.0 13 0.00028 32.5 10.3 114 19-158 3-117 (119)
15 cd04044 C2A_Tricalbin-like C2 84.9 7.2 0.00016 33.6 8.6 118 18-159 4-123 (124)
16 cd08378 C2B_MCTP_PRT_plant C2 84.7 11 0.00024 33.8 9.9 114 19-158 3-119 (121)
17 cd04011 C2B_Ferlin C2 domain s 84.1 4.3 9.4E-05 35.2 6.9 103 15-141 3-110 (111)
18 cd08681 C2_fungal_Inn1p-like C 83.9 11 0.00024 32.6 9.3 115 18-158 3-118 (118)
19 cd08678 C2_C21orf25-like C2 do 83.5 5.9 0.00013 35.2 7.7 79 76-161 43-122 (126)
20 cd08375 C2_Intersectin C2 doma 83.4 21 0.00045 32.9 11.4 119 15-158 14-135 (136)
21 cd00030 C2 C2 domain. The C2 d 83.0 7.7 0.00017 29.9 7.3 88 19-125 2-90 (102)
22 cd08401 C2A_RasA2_RasA3 C2 dom 83.0 5.5 0.00012 35.7 7.3 119 18-158 2-121 (121)
23 cd08377 C2C_MCTP_PRT C2 domain 82.6 18 0.00038 31.2 10.0 115 18-158 3-118 (119)
24 cd08373 C2A_Ferlin C2 domain f 80.4 8.3 0.00018 34.1 7.4 80 76-163 38-120 (127)
25 cd04046 C2_Calpain C2 domain p 79.7 13 0.00029 33.1 8.6 116 18-157 5-120 (126)
26 cd08376 C2B_MCTP_PRT C2 domain 79.6 15 0.00033 31.7 8.6 101 18-141 2-103 (116)
27 cd04014 C2_PKC_epsilon C2 doma 79.4 7.6 0.00016 34.6 7.0 115 18-158 6-128 (132)
28 cd04040 C2D_Tricalbin-like C2 79.4 13 0.00028 32.0 8.1 108 19-148 2-110 (115)
29 cd04024 C2A_Synaptotagmin-like 77.8 25 0.00054 30.6 9.5 91 18-126 3-94 (128)
30 cd08383 C2A_RasGAP C2 domain ( 77.7 27 0.00059 29.9 9.6 113 18-158 2-117 (117)
31 PF00168 C2: C2 domain; Inter 76.8 16 0.00035 28.4 7.4 81 18-117 1-84 (85)
32 cd08392 C2A_SLP-3 C2 domain fi 75.8 15 0.00033 33.6 7.9 97 17-128 16-116 (128)
33 PF14429 DOCK-C2: C2 domain in 75.4 15 0.00033 35.3 8.2 62 76-140 71-135 (184)
34 cd08685 C2_RGS-like C2 domain 73.9 16 0.00034 32.9 7.4 93 17-126 13-109 (119)
35 cd04050 C2B_Synaptotagmin-like 73.1 19 0.00042 31.0 7.5 99 18-140 2-101 (105)
36 cd04038 C2_ArfGAP C2 domain pr 72.2 19 0.00041 34.0 7.8 91 18-130 4-95 (145)
37 cd04028 C2B_RIM1alpha C2 domai 71.7 19 0.0004 34.4 7.7 96 17-126 30-126 (146)
38 cd04039 C2_PSD C2 domain prese 69.5 23 0.00049 31.5 7.3 99 18-134 3-105 (108)
39 cd04030 C2C_KIAA1228 C2 domain 68.6 27 0.00059 30.5 7.6 95 18-127 18-117 (127)
40 smart00239 C2 Protein kinase C 68.4 42 0.00091 26.3 7.9 94 18-128 2-96 (101)
41 cd04029 C2A_SLP-4_5 C2 domain 67.0 26 0.00057 31.6 7.3 97 17-128 16-116 (125)
42 cd08393 C2A_SLP-1_2 C2 domain 66.5 29 0.00063 31.2 7.5 95 18-127 17-115 (125)
43 cd04017 C2D_Ferlin C2 domain f 65.9 59 0.0013 29.4 9.4 123 16-161 1-134 (135)
44 cd08382 C2_Smurf-like C2 domai 64.7 72 0.0016 28.4 9.6 102 17-139 1-103 (123)
45 cd00276 C2B_Synaptotagmin C2 d 63.5 28 0.0006 30.4 6.7 92 17-123 15-109 (134)
46 cd08391 C2A_C2C_Synaptotagmin_ 63.1 79 0.0017 27.1 9.2 113 18-157 3-120 (121)
47 cd08388 C2A_Synaptotagmin-4-11 62.7 55 0.0012 29.7 8.6 107 16-139 16-126 (128)
48 cd04027 C2B_Munc13 C2 domain s 62.2 81 0.0018 28.2 9.5 93 18-127 3-103 (127)
49 cd08385 C2A_Synaptotagmin-1-5- 62.2 37 0.00081 29.7 7.2 93 17-126 17-112 (124)
50 cd04016 C2_Tollip C2 domain pr 60.1 98 0.0021 28.5 9.8 98 38-158 21-121 (121)
51 cd04052 C2B_Tricalbin-like C2 59.8 35 0.00075 29.9 6.6 94 40-158 14-108 (111)
52 cd08384 C2B_Rabphilin_Doc2 C2 58.6 40 0.00086 30.0 6.9 91 17-123 14-108 (133)
53 cd08521 C2A_SLP C2 domain firs 57.3 50 0.0011 28.6 7.1 96 17-127 15-114 (123)
54 cd04031 C2A_RIM1alpha C2 domai 55.5 76 0.0016 27.6 7.9 92 17-123 17-112 (125)
55 cd04018 C2C_Ferlin C2 domain t 54.5 62 0.0013 31.0 7.8 92 19-128 3-108 (151)
56 cd04025 C2B_RasA1_RasA4 C2 dom 54.2 56 0.0012 28.7 7.0 90 18-127 2-92 (123)
57 cd08405 C2B_Synaptotagmin-7 C2 53.9 57 0.0012 29.3 7.1 92 17-124 16-111 (136)
58 cd08680 C2_Kibra C2 domain fou 53.4 74 0.0016 29.3 7.8 95 18-128 16-115 (124)
59 cd04032 C2_Perforin C2 domain 53.2 59 0.0013 30.2 7.2 85 17-122 29-115 (127)
60 cd04054 C2A_Rasal1_RasA4 C2 do 52.9 1.7E+02 0.0036 26.1 10.1 116 19-157 3-120 (121)
61 COG1393 ArsC Arsenate reductas 52.6 30 0.00065 32.2 5.2 79 418-497 9-106 (117)
62 cd08390 C2A_Synaptotagmin-15-1 52.3 87 0.0019 27.2 7.8 49 76-128 62-113 (123)
63 cd08679 C2_DOCK180_related C2 50.0 59 0.0013 31.3 7.0 93 12-125 20-117 (178)
64 PLN02352 phospholipase D epsil 50.0 39 0.00084 40.5 6.8 76 78-164 59-135 (758)
65 cd08409 C2B_Synaptotagmin-15 C 50.0 64 0.0014 29.6 6.9 95 17-127 16-113 (137)
66 cd08381 C2B_PI3K_class_II C2 d 49.9 74 0.0016 28.6 7.2 94 17-127 14-112 (122)
67 cd02425 Peptidase_C39F A sub-f 49.1 26 0.00055 30.2 4.0 26 536-561 78-105 (126)
68 cd08387 C2A_Synaptotagmin-8 C2 48.8 70 0.0015 28.1 6.7 95 17-128 17-114 (124)
69 cd01231 PH_Lnk LNK-family Plec 48.2 14 0.00031 34.8 2.4 21 541-561 73-93 (107)
70 cd04051 C2_SRC2_like C2 domain 47.8 1.9E+02 0.0042 25.3 9.7 109 18-144 2-117 (125)
71 cd04035 C2A_Rabphilin_Doc2 C2 47.5 1E+02 0.0023 27.0 7.6 103 16-135 15-121 (123)
72 cd04037 C2E_Ferlin C2 domain f 47.3 73 0.0016 28.6 6.7 91 18-126 2-93 (124)
73 cd08408 C2B_Synaptotagmin-14_1 46.8 91 0.002 28.9 7.4 93 12-122 13-110 (138)
74 cd04049 C2_putative_Elicitor-r 45.7 1.1E+02 0.0024 26.9 7.5 90 18-126 3-96 (124)
75 cd08688 C2_KIAA0528-like C2 do 45.0 85 0.0019 27.3 6.6 91 19-127 2-95 (110)
76 cd08394 C2A_Munc13 C2 domain f 44.8 86 0.0019 29.9 7.0 83 16-127 4-88 (127)
77 cd08386 C2A_Synaptotagmin-7 C2 44.6 1.5E+02 0.0033 25.9 8.2 98 14-128 14-115 (125)
78 PLN03008 Phospholipase D delta 42.8 74 0.0016 38.8 7.6 80 77-165 102-183 (868)
79 cd04021 C2_E3_ubiquitin_ligase 42.5 99 0.0021 27.8 6.8 63 76-143 46-110 (125)
80 cd03034 ArsC_ArsC Arsenate Red 42.3 66 0.0014 29.0 5.6 79 418-497 7-104 (112)
81 cd02419 Peptidase_C39C A sub-f 42.2 34 0.00074 29.6 3.7 26 532-559 75-102 (127)
82 cd08407 C2B_Synaptotagmin-13 C 41.8 97 0.0021 29.2 6.9 91 18-122 17-111 (138)
83 PRK06309 DNA polymerase III su 41.5 23 0.00051 35.3 3.0 53 490-544 31-91 (232)
84 cd03036 ArsC_like Arsenate Red 40.8 43 0.00094 30.0 4.3 73 418-497 7-106 (111)
85 cd04009 C2B_Munc13-like C2 dom 40.6 2E+02 0.0043 26.0 8.5 98 18-130 18-122 (133)
86 cd08676 C2A_Munc13-like C2 dom 40.4 1.6E+02 0.0036 28.3 8.3 100 14-126 26-144 (153)
87 cd08693 C2_PI3K_class_I_beta_d 40.3 3.7E+02 0.008 26.4 11.2 110 12-137 6-133 (173)
88 cd08389 C2A_Synaptotagmin-14_1 39.2 2.1E+02 0.0046 25.7 8.4 48 76-127 62-113 (124)
89 TIGR00014 arsC arsenate reduct 39.1 48 0.001 30.0 4.3 26 472-497 73-105 (114)
90 cd03035 ArsC_Yffb Arsenate Red 39.0 55 0.0012 29.4 4.6 46 445-497 51-103 (105)
91 cd04026 C2_PKC_alpha_gamma C2 38.9 1.8E+02 0.004 25.8 7.8 47 76-127 62-111 (131)
92 PRK13344 spxA transcriptional 38.8 69 0.0015 30.0 5.4 70 419-497 9-105 (132)
93 PRK12559 transcriptional regul 38.3 46 0.001 31.1 4.2 46 444-497 53-105 (131)
94 cd06130 DNA_pol_III_epsilon_li 38.1 24 0.00053 31.6 2.3 46 493-541 32-84 (156)
95 cd08675 C2B_RasGAP C2 domain s 37.1 1.1E+02 0.0023 28.3 6.3 91 19-126 2-108 (137)
96 cd08402 C2B_Synaptotagmin-1 C2 36.3 1.4E+02 0.003 26.9 6.7 92 17-123 16-110 (136)
97 PF13162 DUF3997: Protein of u 35.9 43 0.00092 31.7 3.5 35 531-565 34-86 (115)
98 cd02418 Peptidase_C39B A sub-f 35.8 53 0.0012 28.6 3.9 29 531-559 76-108 (136)
99 PF13529 Peptidase_C39_2: Pept 35.3 90 0.002 26.6 5.2 42 515-559 86-143 (144)
100 cd04010 C2B_RasA3 C2 domain se 34.0 1.6E+02 0.0036 28.0 7.1 93 18-127 2-110 (148)
101 KOG2457 A/G-specific adenine D 32.6 16 0.00036 41.1 0.4 22 306-348 104-125 (555)
102 TIGR01846 type_I_sec_HlyB type 31.8 44 0.00095 38.1 3.5 46 533-580 64-117 (694)
103 cd08404 C2B_Synaptotagmin-4 C2 31.7 1.9E+02 0.0041 26.0 6.9 91 18-123 17-110 (136)
104 cd04041 C2A_fungal C2 domain f 31.7 1.6E+02 0.0034 25.7 6.2 94 18-127 3-100 (111)
105 TIGR01617 arsC_related transcr 30.8 90 0.002 28.0 4.7 79 418-497 7-107 (117)
106 cd02977 ArsC_family Arsenate R 30.7 1.4E+02 0.0031 26.0 5.7 71 419-497 8-105 (105)
107 cd02421 Peptidase_C39_likeD A 30.5 59 0.0013 28.1 3.4 25 536-560 72-98 (124)
108 TIGR03375 type_I_sec_LssB type 30.5 43 0.00094 38.0 3.2 46 536-581 65-121 (694)
109 cd02423 Peptidase_C39G A sub-f 29.4 83 0.0018 27.2 4.0 30 531-560 75-107 (129)
110 cd08694 C2_Dock-A C2 domains f 28.5 1.1E+02 0.0025 31.3 5.4 105 12-137 21-130 (196)
111 cd08403 C2B_Synaptotagmin-3-5- 28.2 2.5E+02 0.0054 25.2 7.0 90 18-122 16-108 (134)
112 PRK01655 spxA transcriptional 27.7 65 0.0014 30.0 3.3 46 444-497 53-105 (131)
113 cd02417 Peptidase_C39_likeA A 27.5 67 0.0015 27.6 3.2 27 532-559 70-97 (121)
114 PF00388 PI-PLC-X: Phosphatidy 26.9 8.5 0.00018 35.4 -2.6 81 474-567 31-119 (146)
115 cd08395 C2C_Munc13 C2 domain t 25.9 5.1E+02 0.011 23.9 8.7 104 18-140 2-111 (120)
116 PRK10853 putative reductase; P 25.7 1.1E+02 0.0023 28.4 4.3 46 445-497 52-106 (118)
117 cd08406 C2B_Synaptotagmin-12 C 25.5 3.3E+02 0.0072 25.4 7.5 89 18-121 17-108 (136)
118 cd03032 ArsC_Spx Arsenate Redu 25.1 77 0.0017 28.4 3.2 48 444-500 53-107 (115)
119 PLN02270 phospholipase D alpha 25.0 1.8E+02 0.0038 35.6 6.9 76 77-161 73-150 (808)
120 cd03033 ArsC_15kD Arsenate Red 24.8 1.3E+02 0.0028 27.6 4.6 14 484-497 90-103 (113)
121 PF02323 ELH: Egg-laying hormo 24.5 86 0.0019 33.1 3.8 34 283-316 145-178 (255)
122 COG5578 Predicted integral mem 24.1 57 0.0012 33.7 2.4 27 419-446 43-69 (208)
123 smart00148 PLCXc Phospholipase 23.8 18 0.00039 33.8 -1.1 79 474-566 33-120 (135)
124 PF03960 ArsC: ArsC family; I 23.7 51 0.0011 29.2 1.8 72 418-497 4-102 (110)
125 TIGR03796 NHPM_micro_ABC1 NHPM 23.2 81 0.0018 36.0 3.7 46 536-581 78-131 (710)
126 PF09179 TilS: TilS substrate 21.7 70 0.0015 25.6 2.1 26 424-449 15-40 (69)
127 cd08691 C2_NEDL1-like C2 domai 21.7 3.3E+02 0.0073 25.6 6.8 63 77-140 58-120 (137)
128 cd08686 C2_ABR C2 domain in th 21.7 3.2E+02 0.007 25.8 6.6 48 77-127 44-98 (118)
129 cd04020 C2B_SLP_1-2-3-4 C2 dom 21.5 3.4E+02 0.0075 25.9 6.9 96 16-127 27-127 (162)
130 cd04048 C2A_Copine C2 domain f 20.6 5.9E+02 0.013 22.4 7.7 57 77-139 52-112 (120)
No 1
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=99.66 E-value=9.9e-16 Score=135.48 Aligned_cols=131 Identities=29% Similarity=0.450 Sum_probs=103.8
Q ss_pred CCceeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccc-----c
Q 005345 12 ASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFH-----Y 86 (701)
Q Consensus 12 ~srKf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe-----~ 86 (701)
.+.||++.|.+++|++++.. ...|.|+||+++...+ . -+.+.....++.+.| +|+|. |
T Consensus 3 ~~~kf~~~l~i~~l~~~p~~--------~~~v~v~wkr~~~~~~-------~-~~t~~~~~~~~~v~w-~e~~~~~~tl~ 65 (143)
T PF10358_consen 3 KAVKFQFDLTIHELENLPSS--------NGKVFVKWKRGDKSKG-------S-GTTSRANVKNGKVQW-NEEFSFPCTLY 65 (143)
T ss_pred ceeeEEEEEEEEEeECcCCC--------CCEEEEEEEECCCCcc-------c-eeeeeeeccccEEEE-eeEEEEEEEEE
Confidence 35799999999999998773 4789999999986543 1 222222345689999 89999 2
Q ss_pred --c--ccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEeeeec
Q 005345 87 --S--GHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESR 162 (701)
Q Consensus 87 --k--~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl~Elr 162 (701)
+ +.|+||++.|+|+.....|.| ..+|+++|||||||+.+.+ .....+||.-+ ...++.|+|+|++.+++
T Consensus 66 ~~~k~~~~~~K~~~~~v~~~~~~~~k---~~lG~~~inLaey~~~~~~-~~~~~~~l~~~---~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 66 RDKKSKEFQPKELKFSVFEVDGSGKK---KVLGKVSINLAEYANEDEE-PITVRLLLKKC---KKSNATLSISISLSELR 138 (143)
T ss_pred EcCCCCcEeeEEEEEEEEEecCCCcc---ceEEEEEEEHHHhhCcCCC-cEEEEEeCccC---CCCCcEEEEEEEEEECc
Confidence 2 569999999999998855555 6999999999999999843 67777787766 56779999999999998
Q ss_pred cchh
Q 005345 163 FAQE 166 (701)
Q Consensus 163 ~~qe 166 (701)
...+
T Consensus 139 ~~~~ 142 (143)
T PF10358_consen 139 EDPD 142 (143)
T ss_pred cCCC
Confidence 7654
No 2
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=94.87 E-value=0.44 Score=41.23 Aligned_cols=123 Identities=19% Similarity=0.156 Sum_probs=72.9
Q ss_pred eEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccc-cchhhhhhhhhcccccCCCCCCc-eeeecCccccccccccce
Q 005345 16 YEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFS-FFGLRRKILMINLTEEGDEVGDG-VVQWNNQDFHYSGHVFPW 93 (701)
Q Consensus 16 f~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~-~l~slrrsvkrN~T~e~~~~~~~-~VeW~~EEFe~k~~F~PW 93 (701)
+.++|.|.++.+|..............|.|..-|+.. .- .+..|+-. ...+ .-.| +|+|.-.......
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~-------~~~kT~~~--~~~~~~P~w-~e~f~f~~~~~~~ 71 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDS-------AKFKTKVV--KNNGFNPVW-NETFEFDVTVPEL 71 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCC-------CcEeeeee--cCCCcCCcc-CCcEEEEEeCCCe
Confidence 5667777799888765310112335667777765542 11 11122210 1122 5789 9998833111111
Q ss_pred -eEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345 94 -ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL 158 (701)
Q Consensus 94 -evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl 158 (701)
.+.|+|++..+. +. .++|.+.+.|.+...- ...+||.-+.+.......|.+.+++
T Consensus 72 ~~l~~~V~d~~~~--~~--~~iG~~~~~l~~l~~g------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 72 AFLRFVVYDEDSG--DD--DFLGQACLPLDSLRQG------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EEEEEEEEeCCCC--CC--cEeEEEEEEhHHhcCc------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 477888876554 44 5899999999998432 2347888888875556778877765
No 3
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=94.09 E-value=0.73 Score=43.90 Aligned_cols=107 Identities=12% Similarity=0.232 Sum_probs=73.6
Q ss_pred eEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCccccccccccceeEEEEEEecCC-cCcccceeEEEEEe
Q 005345 40 RLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHVFPWELHFTIFNGLN-QGQRQKVTAMGTAT 118 (701)
Q Consensus 40 ~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k~~F~PWevaFtVf~g~n-qg~K~K~~v~Gtas 118 (701)
+..++|.--|-+.+ |.+++.| ...--| +|+|+-.+.-..=+|.|+|+.... .+.+.+-.+||++.
T Consensus 28 ~~Y~~i~Ld~~~va----RT~v~~~---------~~nP~W-~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~ 93 (146)
T cd04013 28 RYYCELCLDKTLYA----RTTSKLK---------TDTLFW-GEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVN 93 (146)
T ss_pred CceEEEEECCEEEE----EEEEEcC---------CCCCcc-eeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEE
Confidence 68899888764422 2233321 225789 999994311112469999985443 33455678999999
Q ss_pred eehhhhcccccccceeeeeeeeecCCCc--------cCCceeeeEEEeeeecc
Q 005345 119 LNLAKYANSDKEKELQIKVPLTVSGDTI--------EGDPYLCLSFRLIESRF 163 (701)
Q Consensus 119 LNLAEyAS~a~eke~ei~lPLsv~~g~~--------e~~psL~lSlsl~Elr~ 163 (701)
+-+.+.++- .+++.=+||.-..+.. ...|.|+|.+.|..+..
T Consensus 94 Ip~~~l~~~---~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~ 143 (146)
T cd04013 94 IPVTDVSSR---QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRV 143 (146)
T ss_pred EEHHHhcCC---CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeee
Confidence 999999853 3688888988777764 66699999999976653
No 4
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=93.46 E-value=1.3 Score=39.79 Aligned_cols=119 Identities=15% Similarity=0.153 Sum_probs=70.7
Q ss_pred CceeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc--ccc
Q 005345 13 SRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS--GHV 90 (701)
Q Consensus 13 srKf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k--~~F 90 (701)
.|.++| .|..+.+|+... .....|.|...|-+.. |..+++ |. .=.| ||+|.-. ...
T Consensus 3 ~~~L~V--~Vi~A~~L~~~~-----~~DPYv~v~l~~~~~~----kT~v~~--~~--------nP~W-nE~f~f~~~~~~ 60 (126)
T cd08400 3 VRSLQL--NVLEAHKLPVKH-----VPHPYCVISLNEVKVA----RTKVRE--GP--------NPVW-SEEFVFDDLPPD 60 (126)
T ss_pred eeEEEE--EEEEeeCCCCCC-----CCCeeEEEEECCEeEE----EeecCC--CC--------CCcc-CCEEEEecCCCC
Confidence 455444 445889987642 2346677777552221 222332 11 2359 9999833 112
Q ss_pred cceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCC-CccCCceeeeEEEeee
Q 005345 91 FPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGD-TIEGDPYLCLSFRLIE 160 (701)
Q Consensus 91 ~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g-~~e~~psL~lSlsl~E 160 (701)
.. .+.+.|+.... ..+-..||.+++.|+++.... ..+.-.||.-... .....-.|+|+|+|.|
T Consensus 61 ~~-~l~v~v~d~~~---~~~d~~iG~v~i~l~~l~~~~---~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 61 VN-SFTISLSNKAK---RSKDSEIAEVTVQLSKLQNGQ---ETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred cC-EEEEEEEECCC---CCCCCeEEEEEEEHhHccCCC---cccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 11 35677776533 234468999999999988743 4566667754432 2344478999999875
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=91.02 E-value=2.7 Score=36.87 Aligned_cols=118 Identities=16% Similarity=0.208 Sum_probs=68.7
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeE
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWEL 95 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWev 95 (701)
+++|.|.++.+|....... ..-..|.|+-.|-+. .|..+.++ | -.=.| ||+|.-. ... -=.|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g--~~Dpyv~v~~~~~~~----~kT~~~~~-t--------~nP~W-ne~f~f~v~~~-~~~l 63 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGG--TSDPYVKFKYGGKTV----YKSKTIYK-N--------LNPVW-DEKFTLPIEDV-TQPL 63 (121)
T ss_pred CeEEEEEEeeCCCCcCCCC--CCCCeEEEEECCEEE----EEeeeccC-C--------CCCcc-ceeEEEEecCC-CCeE
Confidence 3677788999887654211 223455555433111 12122221 1 13479 8999833 111 1357
Q ss_pred EEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345 96 HFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL 158 (701)
Q Consensus 96 aFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl 158 (701)
.|.|+.--.. .++ .+||.+.+.|+++... ...+..+||.-+++ ....-.|+|.+++
T Consensus 64 ~~~v~D~d~~-~~~--~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~-~~~~G~l~l~~~~ 119 (121)
T cd04042 64 YIKVFDYDRG-LTD--DFMGSAFVDLSTLELN---KPTEVKLKLEDPNS-DEDLGYISLVVTL 119 (121)
T ss_pred EEEEEeCCCC-CCC--cceEEEEEEHHHcCCC---CCeEEEEECCCCCC-ccCceEEEEEEEE
Confidence 8888854322 233 5999999999998853 35677778865554 2345688888876
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=91.00 E-value=2.2 Score=37.74 Aligned_cols=118 Identities=10% Similarity=0.076 Sum_probs=66.7
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc--cc----cc
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS--GH----VF 91 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k--~~----F~ 91 (701)
|+|.|.++.||..... ....-..|.|+-.+.+ .|..+++ +.-.-.| ||+|... .. ..
T Consensus 1 ~~V~V~~A~~L~~~d~--~g~~dpYv~v~l~~~~-----~kT~v~~---------~t~nP~W-ne~f~F~v~~~~~~~~~ 63 (126)
T cd08682 1 VQVTVLQARGLLCKGK--SGTNDAYVIIQLGKEK-----YSTSVKE---------KTTSPVW-KEECSFELPGLLSGNGN 63 (126)
T ss_pred CEEEEEECcCCcCCCC--CcCCCceEEEEECCee-----eeeeeec---------CCCCCEe-CceEEEEecCcccCCCc
Confidence 5788889999976532 1223466777663321 1222222 1124589 8987732 21 23
Q ss_pred ceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCC-ccCCceeeeEE
Q 005345 92 PWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDT-IEGDPYLCLSF 156 (701)
Q Consensus 92 PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~-~e~~psL~lSl 156 (701)
.=.|.|+|+.-..-+ +. .+||.+.+.|+++..... .....=+||.-..+. .....-|+|++
T Consensus 64 ~~~l~~~v~d~~~~~-~d--~~iG~~~i~l~~l~~~~~-~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 64 RATLQLTVMHRNLLG-LD--KFLGQVSIPLNDLDEDKG-RRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CCEEEEEEEEccccC-CC--ceeEEEEEEHHHhhccCC-CcccEEEECcCCCCCCccccceEEEEe
Confidence 346889999653222 33 489999999999874322 245556676543332 22345666664
No 7
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=89.72 E-value=3.6 Score=38.67 Aligned_cols=123 Identities=11% Similarity=0.142 Sum_probs=72.5
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH 96 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva 96 (701)
++|.|.++.+|...+.. ......|.|+.-| + ..|..+.++-| -.-.| ||.|+-. ..-..=.|.
T Consensus 2 L~V~Vi~A~~L~~~d~~--g~sDPYV~v~l~~-~----~~kTk~~~~~t--------~nP~W-NE~F~f~v~~~~~~~l~ 65 (150)
T cd04019 2 LRVTVIEAQDLVPSDKN--RVPEVFVKAQLGN-Q----VLRTRPSQTRN--------GNPSW-NEELMFVAAEPFEDHLI 65 (150)
T ss_pred EEEEEEEeECCCCCCCC--CCCCeEEEEEECC-E----EeeeEeccCCC--------CCCcc-cCcEEEEecCccCCeEE
Confidence 45667788888776422 2345677777743 1 11212222112 13589 9999833 111112677
Q ss_pred EEEEecCCcCcccceeEEEEEeeehhhhcccccc-cceeeeeeeeecCCC------ccCCceeeeEEEee
Q 005345 97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKE-KELQIKVPLTVSGDT------IEGDPYLCLSFRLI 159 (701)
Q Consensus 97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~e-ke~ei~lPLsv~~g~------~e~~psL~lSlsl~ 159 (701)
|.|+.-..- .++ ..||.+.|+|.++..-... ..++.=+||.-+++. .-...-|||.|+|-
T Consensus 66 v~V~d~~~~-~~d--d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 66 LSVEDRVGP-NKD--EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred EEEEEecCC-CCC--CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 888853322 233 5999999999998754221 245666788776642 23458899999984
No 8
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=89.68 E-value=5.3 Score=34.98 Aligned_cols=118 Identities=18% Similarity=0.139 Sum_probs=63.5
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH 96 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva 96 (701)
..|.|.++.+|...... ......|.|.-.+.+... .|..+.+| | -.=.| ||+|... ..-..=.|.
T Consensus 3 ~~V~v~~a~~L~~~~~~--~~~Dpyv~v~~~~~~~~~--~kT~~~~~-t--------~~P~W-ne~f~f~i~~~~~~~L~ 68 (126)
T cd04043 3 FTIRIVRAENLKADSSN--GLSDPYVTLVDTNGKRRI--AKTRTIYD-T--------LNPRW-DEEFELEVPAGEPLWIS 68 (126)
T ss_pred EEEEEEEeECCCCCCCC--CCCCceEEEEECCCCeee--ecccEecC-C--------CCCcc-cceEEEEcCCCCCCEEE
Confidence 34555688888765421 122356667543321111 12223222 1 12359 9999844 111345788
Q ss_pred EEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEee
Q 005345 97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLI 159 (701)
Q Consensus 97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl~ 159 (701)
|+|+.....+ +-.++|.+.++|++..........+.-+||. + ..-|+|.|++.
T Consensus 69 i~v~d~d~~~---~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-~------~g~i~l~~~~~ 121 (126)
T cd04043 69 ATVWDRSFVG---KHDLCGRASLKLDPKRFGDDGLPREIWLDLD-T------QGRLLLRVSME 121 (126)
T ss_pred EEEEECCCCC---CCceEEEEEEecCHHHcCCCCCCceEEEEcC-C------CCeEEEEEEEe
Confidence 9998664433 4468999999999874332111334445554 2 34566666653
No 9
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=89.03 E-value=3.8 Score=36.20 Aligned_cols=126 Identities=12% Similarity=0.052 Sum_probs=71.1
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCcccc--chhhhhhhhhcccccCCCCCCceeeecCcccccc-cccccee
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSF--FGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWE 94 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~--l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWe 94 (701)
++|.|.++.+|....... ..-..|.|...|++.. ....+..+.+| | -.=.| ||+|... .... =.
T Consensus 2 L~v~Vi~a~~L~~~d~~~--~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t--------~nP~W-ne~f~f~~~~~~-~~ 68 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFG--ASDPYVKISLYDPDGNGEIDSVQTKTIKK-T--------LNPKW-NEEFFFRVNPRE-HR 68 (133)
T ss_pred EEEEEEEeECCCcccCCC--CcCcEEEEEEECCCCCCcccceeeeEEcC-C--------CCCcE-eeEEEEEEcCCC-CE
Confidence 356677888887653211 2234555666566421 11112222222 1 23579 8988844 1111 24
Q ss_pred EEEEEEecCCcCcccceeEEEEEeeehhhhcccccc---cceeeeeeeeecCCCccCCceeeeEEEee
Q 005345 95 LHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKE---KELQIKVPLTVSGDTIEGDPYLCLSFRLI 159 (701)
Q Consensus 95 vaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~e---ke~ei~lPLsv~~g~~e~~psL~lSlsl~ 159 (701)
|.|.|+.-... ++-.+||.+.+.|+++...... --.+.-.||.=+.......-.|+|+++||
T Consensus 69 l~~~v~d~~~~---~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 69 LLFEVFDENRL---TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred EEEEEEECCCC---CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 77888854322 2335899999999999875421 11334556764444445568899999885
No 10
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=87.66 E-value=6.5 Score=37.95 Aligned_cols=132 Identities=15% Similarity=0.106 Sum_probs=76.0
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-----cccc-
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-----GHVF- 91 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-----~~F~- 91 (701)
..|+|.+.-|++++........-..|.+-.--|.-.-...|.++++ .|. .=+| ||.|... ..|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k-~Tl--------nPvf-NE~f~f~I~~~~~~~~R 73 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIK-DTN--------SPEY-NESFKLNINRKHRSFQR 73 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCccc-CCC--------CCcc-cceEEEEeccccchhhh
Confidence 4577778888776654332233345555432232222223444544 222 2379 9999822 2233
Q ss_pred ---ceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEeeeeccchh
Q 005345 92 ---PWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIESRFAQE 166 (701)
Q Consensus 92 ---PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl~Elr~~qe 166 (701)
-=-|-|.|++--.-..+. .+||+|.++|+.+....+ +...+||. .|.-....-|+|.+.+-|=-+.++
T Consensus 74 ~l~~~~L~~~V~d~~~f~~~D--~~iG~~~i~L~~l~~~~~---~~~~~~L~--~~~k~~Gg~l~v~ir~r~p~~~~~ 144 (155)
T cd08690 74 VFKRHGLKFEVYHKGGFLRSD--KLLGTAQVKLEPLETKCE---IHESVDLM--DGRKATGGKLEVKVRLREPLTGKQ 144 (155)
T ss_pred hccCCcEEEEEEeCCCcccCC--CeeEEEEEEcccccccCc---ceEEEEhh--hCCCCcCCEEEEEEEecCCCccce
Confidence 344889998543222233 489999999999977663 44467765 354455578999988754433333
No 11
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=87.63 E-value=5.4 Score=36.89 Aligned_cols=106 Identities=14% Similarity=0.193 Sum_probs=62.5
Q ss_pred EEEEEeecCCCCCCC-ChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345 19 FTVIQRLEGFNIKQS-DNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH 96 (701)
Q Consensus 19 ~lvv~rleG~~~~~~-~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva 96 (701)
.|.|.++.|+++... +.....-.+|.|+- |++. .|..+.+| .-.=.| ||+|.-- .. ....|.
T Consensus 3 ~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~-g~~~----~rTk~~~~---------~~nP~W-nE~f~f~v~~-~~~~l~ 66 (126)
T cd08379 3 EVGILGAQGLDVLRAKDGRGSTDAYCVAKY-GPKW----VRTRTVED---------SSNPRW-NEQYTWPVYD-PCTVLT 66 (126)
T ss_pred EEEEEEeECCccccccccCCCCCeeEEEEE-CCEE----eEcCcccC---------CCCCcc-eeEEEEEecC-CCCEEE
Confidence 455669999533322 22223357788876 4431 12222221 123579 9999932 11 124799
Q ss_pred EEEEecCCcC---cccceeEEEEEeeehhhhcccccccceeeeeeeeecC
Q 005345 97 FTIFNGLNQG---QRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSG 143 (701)
Q Consensus 97 FtVf~g~nqg---~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~ 143 (701)
|+||+...-+ +..+--+||.+.++|+++..- ..++..+||.-..
T Consensus 67 v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~---~~~~~~~~L~~~~ 113 (126)
T cd08379 67 VGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDD---RVYAHSYPLLSLN 113 (126)
T ss_pred EEEEECCCccccccCCCCceEEEEEEEHHHccCC---CEEeeEEEeEeCC
Confidence 9999754431 222336899999999997653 3677888987554
No 12
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=86.86 E-value=2.6 Score=39.77 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=51.1
Q ss_pred eeeecCcccc-cc-ccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCC-ccCCcee
Q 005345 76 VVQWNNQDFH-YS-GHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDT-IEGDPYL 152 (701)
Q Consensus 76 ~VeW~~EEFe-~k-~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~-~e~~psL 152 (701)
.-+| ||.|. +- +.- =.|.|+|+....-| -.+||++++.|++..... ..+.-+||.-+.+. ..+.+.|
T Consensus 82 nP~W-nE~F~~~~~~~~--~~l~~~V~d~d~~~----~~~IG~~~i~l~~l~~g~---~~~~w~~L~~~~~~~~~~~~~l 151 (158)
T cd04015 82 NPVW-NESFHIYCAHYA--SHVEFTVKDNDVVG----AQLIGRAYIPVEDLLSGE---PVEGWLPILDSNGKPPKPGAKI 151 (158)
T ss_pred CCcc-ceEEEEEccCCC--CEEEEEEEeCCCcC----CcEEEEEEEEhHHccCCC---CcceEEECcCCCCCCCCCCCEE
Confidence 4689 99998 22 111 25889998653322 259999999999987532 56677788776554 4456899
Q ss_pred eeEEEe
Q 005345 153 CLSFRL 158 (701)
Q Consensus 153 ~lSlsl 158 (701)
||+++|
T Consensus 152 ~v~~~f 157 (158)
T cd04015 152 RVSLQF 157 (158)
T ss_pred EEEEEE
Confidence 999987
No 13
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=86.10 E-value=9.6 Score=33.80 Aligned_cols=119 Identities=13% Similarity=0.221 Sum_probs=66.8
Q ss_pred EEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc----cccccee
Q 005345 19 FTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS----GHVFPWE 94 (701)
Q Consensus 19 ~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k----~~F~PWe 94 (701)
+|.|.++.+|...... ......|.|.-.|.+ .|..+++| .-.=.| ||.|... ....--.
T Consensus 3 ~V~vi~A~~L~~~d~~--g~~dpyv~v~~~~~~-----~rT~v~~~---------t~nP~W-ne~f~f~~~~~~~~~~~~ 65 (127)
T cd04022 3 VVEVVDAQDLMPKDGQ--GSSSAYVELDFDGQK-----KRTRTKPK---------DLNPVW-NEKLVFNVSDPSRLSNLV 65 (127)
T ss_pred EEEEEEeeCCCCCCCC--CCcCcEEEEEECCEE-----ecceeEcC---------CCCCcc-ceEEEEEccCHHHccCCe
Confidence 4555588787665321 122456666654321 12222221 113479 8999843 1222357
Q ss_pred EEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345 95 LHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL 158 (701)
Q Consensus 95 vaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl 158 (701)
|.|+|++--..+. +-.+||.+.+.|+++..-- .....-+||.-++......--|+|++.|
T Consensus 66 l~~~V~d~~~~~~--~d~~lG~v~i~l~~l~~~~--~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 125 (127)
T cd04022 66 LEVYVYNDRRSGR--RRSFLGRVRISGTSFVPPS--EAVVQRYPLEKRGLFSRVRGEIGLKVYI 125 (127)
T ss_pred EEEEEeeCCCCcC--CCCeeeEEEEcHHHcCCCC--CccceEeEeeeCCCCCCccEEEEEEEEE
Confidence 8999997433331 2358999999999998422 1344556777554333344567777665
No 14
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=85.00 E-value=13 Score=32.52 Aligned_cols=114 Identities=16% Similarity=0.185 Sum_probs=63.9
Q ss_pred EEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEEE
Q 005345 19 FTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELHF 97 (701)
Q Consensus 19 ~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWevaF 97 (701)
.|.|.++.+|..... .......|.|...+..... .|..+.+| ...=.| ||.|... ..-..=.|.|
T Consensus 3 ~V~vi~a~~L~~~~~--~~~~Dpyv~v~~~~~~~~~--~kT~vv~~---------t~nP~W-ne~f~f~i~~~~~~~l~v 68 (119)
T cd04036 3 TVRVLRATNITKGDL--LSTPDCYVELWLPTASDEK--KRTKTIKN---------SINPVW-NETFEFRIQSQVKNVLEL 68 (119)
T ss_pred EEEEEEeeCCCccCC--CCCCCcEEEEEEcCCCCcc--CccceecC---------CCCCcc-ceEEEEEeCcccCCEEEE
Confidence 566678888876532 1223456777763321110 12122221 123579 8998833 1111124789
Q ss_pred EEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345 98 TIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL 158 (701)
Q Consensus 98 tVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl 158 (701)
+|+.--.. ++ .++|++.++|+++.... .....+||.-. +.-.|+|.|.|
T Consensus 69 ~v~d~d~~--~~--~~iG~~~~~l~~l~~g~---~~~~~~~L~~~-----~~g~l~~~~~~ 117 (119)
T cd04036 69 TVMDEDYV--MD--DHLGTVLFDVSKLKLGE---KVRVTFSLNPQ-----GKEELEVEFLL 117 (119)
T ss_pred EEEECCCC--CC--cccEEEEEEHHHCCCCC---cEEEEEECCCC-----CCceEEEEEEe
Confidence 99975333 33 48999999999987542 56666676532 24556666655
No 15
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=84.90 E-value=7.2 Score=33.61 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=68.0
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCc-cccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeE
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGL-FSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWEL 95 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGP-k~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWev 95 (701)
+.|.|.++.+|+.... ........|.|+..|. +. .|..+.+| | -.=.| ||.|.-. + -.-=.|
T Consensus 4 l~v~v~~a~~L~~~~~-~~~~~dpyv~v~~~~~~~~----~kT~~~~~-~--------~~P~W-ne~~~~~v~-~~~~~l 67 (124)
T cd04044 4 LAVTIKSARGLKGSDI-IGGTVDPYVTFSISNRREL----ARTKVKKD-T--------SNPVW-NETKYILVN-SLTEPL 67 (124)
T ss_pred EEEEEEcccCCCcccc-cCCCCCCeEEEEECCCCcc----eEeeeecC-C--------CCCcc-eEEEEEEeC-CCCCEE
Confidence 5677788888874321 1112356777777663 11 11122221 1 23579 8888732 2 112358
Q ss_pred EEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEee
Q 005345 96 HFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLI 159 (701)
Q Consensus 96 aFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl~ 159 (701)
.|.|+.-...+ +-.+||.+.++|+++........ +..+|. +.+. ....|+|+|.|.
T Consensus 68 ~~~v~d~~~~~---~d~~iG~~~~~l~~l~~~~~~~~--~~~~~~-~~~k--~~G~i~~~l~~~ 123 (124)
T cd04044 68 NLTVYDFNDKR---KDKLIGTAEFDLSSLLQNPEQEN--LTKNLL-RNGK--PVGELNYDLRFF 123 (124)
T ss_pred EEEEEecCCCC---CCceeEEEEEEHHHhccCccccC--cchhhh-cCCc--cceEEEEEEEeC
Confidence 88898654432 33689999999999997664322 333443 2333 347899998874
No 16
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=84.71 E-value=11 Score=33.82 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=67.1
Q ss_pred EEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEEE
Q 005345 19 FTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELHF 97 (701)
Q Consensus 19 ~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWevaF 97 (701)
.|.|.++.+|... ..-.+|.|...+.+ .|..+.+ +.-.=.| ||+|... .....=.|.|
T Consensus 3 ~V~Vi~a~~L~~~------~~Dpyv~v~l~~~~-----~kT~v~~---------~t~nP~W-ne~F~f~~~~~~~~~L~~ 61 (121)
T cd08378 3 YVRVVKARGLPAN------SNDPVVEVKLGNYK-----GSTKAIE---------RTSNPEW-NQVFAFSKDRLQGSTLEV 61 (121)
T ss_pred EEEEEEecCCCcc------cCCCEEEEEECCcc-----ccccccC---------CCCCCcc-ceEEEEEcCCCcCCEEEE
Confidence 4566688888664 22456667663311 1211222 1123579 9999955 2224456889
Q ss_pred EEEecCCcCcccceeEEEEEeeehhhhccccc--ccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345 98 TIFNGLNQGQRQKVTAMGTATLNLAKYANSDK--EKELQIKVPLTVSGDTIEGDPYLCLSFRL 158 (701)
Q Consensus 98 tVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~--eke~ei~lPLsv~~g~~e~~psL~lSlsl 158 (701)
+|+.-.+. +--+||.+.+.|+++..... ......-.||.-..+ ......|+|+|-|
T Consensus 62 ~v~d~d~~----~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~ 119 (121)
T cd08378 62 SVWDKDKA----KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWF 119 (121)
T ss_pred EEEeCCCC----cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEe
Confidence 99865433 34689999999999876431 112334456654443 3445778888765
No 17
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=84.13 E-value=4.3 Score=35.16 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=60.6
Q ss_pred eeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCccccccccccc--
Q 005345 15 NYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHVFP-- 92 (701)
Q Consensus 15 Kf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k~~F~P-- 92 (701)
-|.|+|.|.++.+|... ..-..|+|+-.|.+. +|+-. .+.-.-.| ||.|.......+
T Consensus 3 ~~~l~V~v~~a~~L~~~------~~dpyv~v~~~~~~~------------kT~~~--~~t~nP~w-ne~f~f~~~~~~~~ 61 (111)
T cd04011 3 DFQVRVRVIEARQLVGG------NIDPVVKVEVGGQKK------------YTSVK--KGTNCPFY-NEYFFFNFHESPDE 61 (111)
T ss_pred cEEEEEEEEEcccCCCC------CCCCEEEEEECCEee------------eeeEE--eccCCCcc-ccEEEEecCCCHHH
Confidence 58999999999998721 123567777644321 22211 11123579 899873311111
Q ss_pred ---eeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeee
Q 005345 93 ---WELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTV 141 (701)
Q Consensus 93 ---WevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv 141 (701)
=.|.|+|+.-...+ ++ .+||.++++|++.-....-.-...=+||+-
T Consensus 62 l~~~~l~i~V~d~~~~~-~~--~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 62 LFDKIIKISVYDSRSLR-SD--TLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred HhcCeEEEEEEcCcccc-cC--CccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 25889998654332 23 589999999999866543222344566654
No 18
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=83.90 E-value=11 Score=32.65 Aligned_cols=115 Identities=13% Similarity=0.205 Sum_probs=64.2
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH 96 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva 96 (701)
++|.|.++.+|...... ......|.|.-.+.+ .|..+.. .+.-.=.| ||+|... ..-..=.|.
T Consensus 3 L~V~v~~A~~L~~~~~~--~~~dpyv~v~~~~~~-----~kT~~~~--------~~~~nP~W-ne~f~f~v~~~~~~~l~ 66 (118)
T cd08681 3 LVVVVLKARNLPNKRKL--DKQDPYCVLRIGGVT-----KKTKTDF--------RGGQHPEW-DEELRFEITEDKKPILK 66 (118)
T ss_pred EEEEEEEccCCCCCCcC--CCCCceEEEEECCCc-----ccccccc--------CCCCCCcc-CceEEEEecCCCCCEEE
Confidence 56777788888765321 223456666654422 1111111 11113579 8988833 111223688
Q ss_pred EEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345 97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL 158 (701)
Q Consensus 97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl 158 (701)
|.|+.--..+ -.+||.+.++|+++.... ..+.-+||.-++ ...-.|+|.|+|
T Consensus 67 i~v~d~~~~~----~~~iG~~~~~l~~~~~~~---~~~~w~~L~~~~---~~~G~i~l~l~f 118 (118)
T cd08681 67 VAVFDDDKRK----PDLIGDTEVDLSPALKEG---EFDDWYELTLKG---RYAGEVYLELTF 118 (118)
T ss_pred EEEEeCCCCC----CcceEEEEEecHHHhhcC---CCCCcEEeccCC---cEeeEEEEEEEC
Confidence 9999643322 258999999999986643 234445665333 233467777664
No 19
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=83.52 E-value=5.9 Score=35.16 Aligned_cols=79 Identities=14% Similarity=0.214 Sum_probs=52.8
Q ss_pred eeeecCccccccccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCC-CccCCceeee
Q 005345 76 VVQWNNQDFHYSGHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGD-TIEGDPYLCL 154 (701)
Q Consensus 76 ~VeW~~EEFe~k~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g-~~e~~psL~l 154 (701)
.-.| +|+|...-...-=.+.|.|+.--+.+ ++ -.||.+.++|.++...... +..+||.-..+ .......|+|
T Consensus 43 nP~W-ne~f~f~~~~~~~~l~~~v~d~~~~~-~~--~~lG~~~i~l~~l~~~~~~---~~~~~L~~~~~~~~~~~G~l~l 115 (126)
T cd08678 43 NPFW-DEHFLFELSPNSKELLFEVYDNGKKS-DS--KFLGLAIVPFDELRKNPSG---RQIFPLQGRPYEGDSVSGSITV 115 (126)
T ss_pred CCcc-CceEEEEeCCCCCEEEEEEEECCCCC-CC--ceEEEEEEeHHHhccCCce---eEEEEecCCCCCCCCcceEEEE
Confidence 3589 89997330001126889999655443 33 4899999999999876533 45678874433 2345688999
Q ss_pred EEEeeee
Q 005345 155 SFRLIES 161 (701)
Q Consensus 155 Slsl~El 161 (701)
.|.|++.
T Consensus 116 ~~~~~~~ 122 (126)
T cd08678 116 EFLFMEP 122 (126)
T ss_pred EEEEecc
Confidence 9999764
No 20
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=83.40 E-value=21 Score=32.93 Aligned_cols=119 Identities=11% Similarity=0.121 Sum_probs=66.1
Q ss_pred eeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccce
Q 005345 15 NYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPW 93 (701)
Q Consensus 15 Kf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PW 93 (701)
--.++|.|.+..||...... ...-..|.|...+.+ .|..+.+| .-.=.| ||.|.-. .....=
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~--g~~DPYv~v~~~~~~-----~kT~vi~~---------t~nP~W-ne~f~f~v~~~~~~ 76 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSN--GKSDPYCEVSMGSQE-----HKTKVVSD---------TLNPKW-NSSMQFFVKDLEQD 76 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCC--CCcCcEEEEEECCEe-----eeccccCC---------CCCCcc-CceEEEEecCccCC
Confidence 35678888899998765321 122355666663321 22233332 123579 8888732 111112
Q ss_pred eEEEEEEecCCcCcccceeEEEEEeeehhhhcc--cccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345 94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYAN--SDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL 158 (701)
Q Consensus 94 evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS--~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl 158 (701)
.+.|.|+.-...+ +-.+||.+.++|.++.. .+........++|+ + ....-+||+++|
T Consensus 77 ~l~i~V~D~d~~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~---~--~~~g~i~l~~~~ 135 (136)
T cd08375 77 VLCITVFDRDFFS---PDDFLGRTEIRVADILKETKESKGPITKRLLLH---E--VPTGEVVVKLDL 135 (136)
T ss_pred EEEEEEEECCCCC---CCCeeEEEEEEHHHhccccccCCCcEEEEeccc---c--ccceeEEEEEEe
Confidence 5778888554332 33599999999999886 22233344455553 1 222356666665
No 21
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=83.03 E-value=7.7 Score=29.89 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=55.1
Q ss_pred EEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEEE
Q 005345 19 FTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELHF 97 (701)
Q Consensus 19 ~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWevaF 97 (701)
.|.+++..++.... ........|.|.+.+.. ..|..+.. +...-.| ++.|... ..-..-.+.|
T Consensus 2 ~v~i~~~~~l~~~~--~~~~~~~~v~v~~~~~~---------~~~T~~~~----~~~~P~w-~~~~~~~~~~~~~~~l~i 65 (102)
T cd00030 2 RVTVIEARNLPAKD--LNGKSDPYVKVSLGGKQ---------KFKTKVVK----NTLNPVW-NETFEFPVLDPESDTLTV 65 (102)
T ss_pred EEEEEeeeCCCCcC--CCCCCCcEEEEEeccCc---------eEecceeC----CCCCCcc-cceEEEEccCCCCCEEEE
Confidence 45666777776542 11234677888887611 11111111 1124579 9999855 2225677899
Q ss_pred EEEecCCcCcccceeEEEEEeeehhhhc
Q 005345 98 TIFNGLNQGQRQKVTAMGTATLNLAKYA 125 (701)
Q Consensus 98 tVf~g~nqg~K~K~~v~GtasLNLAEyA 125 (701)
.|++..+.+ +..++|++.++|.+..
T Consensus 66 ~v~~~~~~~---~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 66 EVWDKDRFS---KDDFLGEVEIPLSELL 90 (102)
T ss_pred EEEecCCCC---CCceeEEEEEeHHHhh
Confidence 999877654 4459999999999998
No 22
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=82.95 E-value=5.5 Score=35.71 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=67.9
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH 96 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva 96 (701)
+++.|.++.||...... ....-..|.|+-++-+.. +..++++ |. .-.| ||+|... .. .--.|.
T Consensus 2 l~v~v~~a~~L~~~~~~-~g~sDpYv~v~l~~~~~~----kT~v~~k-t~--------~P~W-nE~F~f~v~~-~~~~l~ 65 (121)
T cd08401 2 LKIKIGEAKNLPPRSGP-NKMRDCYCTVNLDQEEVF----RTKTVEK-SL--------CPFF-GEDFYFEIPR-TFRHLS 65 (121)
T ss_pred eEEEEEEccCCCCCCCC-CCCcCcEEEEEECCccEE----EeeEEEC-CC--------CCcc-CCeEEEEcCC-CCCEEE
Confidence 35667788888765211 111234556655443211 1123321 22 2359 9999833 11 114788
Q ss_pred EEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345 97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL 158 (701)
Q Consensus 97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl 158 (701)
|.|+....- .+-..+|.++++|+++.... ..+.-+||.-........--|||+|+|
T Consensus 66 ~~v~d~~~~---~~~~~iG~~~i~l~~l~~~~---~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 66 FYIYDRDVL---RRDSVIGKVAIKKEDLHKYY---GKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEECCCC---CCCceEEEEEEEHHHccCCC---CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 999876643 33468999999999998643 356666776543333345567777764
No 23
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=82.57 E-value=18 Score=31.24 Aligned_cols=115 Identities=12% Similarity=0.147 Sum_probs=62.2
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH 96 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva 96 (701)
++|.|.+..+|....... .....|.|+-.+.+ .|..+.+| | -.=.| +|+|... ... .=.+.
T Consensus 3 l~v~v~~a~~L~~~~~~~--~~dPyv~v~~~~~~-----~~T~~~~~-t--------~nP~W-~e~f~~~~~~~-~~~l~ 64 (119)
T cd08377 3 LQVKVIRASGLAAADIGG--KSDPFCVLELVNAR-----LQTHTIYK-T--------LNPEW-NKIFTFPIKDI-HDVLE 64 (119)
T ss_pred EEEEEEeeeCCCCCCCCC--CCCcEEEEEECCEe-----eecceecC-C--------cCCcc-CcEEEEEecCc-CCEEE
Confidence 445666888887654221 22345555544322 12112221 1 12469 9999843 211 23578
Q ss_pred EEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345 97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL 158 (701)
Q Consensus 97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl 158 (701)
|+|+...+. .+-.++|.+.++|+|..... . .-.+|.-+.......-.|+|++.|
T Consensus 65 ~~v~d~~~~---~~~~~iG~~~~~l~~~~~~~-~----~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 65 VTVYDEDKD---KKPEFLGKVAIPLLSIKNGE-R----KWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EEEEECCCC---CCCceeeEEEEEHHHCCCCC-c----eEEECcccCCCCceeeEEEEEEEe
Confidence 889865443 33458999999999986543 1 233444444333344566666654
No 24
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=80.38 E-value=8.3 Score=34.10 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=54.5
Q ss_pred eeeecCcccccc--cc-ccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCcee
Q 005345 76 VVQWNNQDFHYS--GH-VFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYL 152 (701)
Q Consensus 76 ~VeW~~EEFe~k--~~-F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL 152 (701)
.-.| ||+|... .. -..=.|.|.|+.-...+ +-.++|.+.++|++.... ......+||.-+.+.... ..|
T Consensus 38 nP~W-ne~f~f~~~~~~~~~~~l~~~v~d~~~~~---~d~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~~~~~-~~l 109 (127)
T cd08373 38 NPVW-NETFEWPLAGSPDPDESLEIVVKDYEKVG---RNRLIGSATVSLQDLVSE---GLLEVTEPLLDSNGRPTG-ATI 109 (127)
T ss_pred CCcc-cceEEEEeCCCcCCCCEEEEEEEECCCCC---CCceEEEEEEEhhHcccC---CceEEEEeCcCCCCCccc-EEE
Confidence 4689 8999843 22 23456788888653332 235899999999999864 356777888655554433 589
Q ss_pred eeEEEeeeecc
Q 005345 153 CLSFRLIESRF 163 (701)
Q Consensus 153 ~lSlsl~Elr~ 163 (701)
+|++++.+...
T Consensus 110 ~l~~~~~~~~~ 120 (127)
T cd08373 110 SLEVSYQPPDG 120 (127)
T ss_pred EEEEEEeCCCC
Confidence 99999876543
No 25
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=79.68 E-value=13 Score=33.11 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=63.5
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCccccccccccceeEEE
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHVFPWELHF 97 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k~~F~PWevaF 97 (701)
++|.|.++.||...... ...-..|.|+-.|.+ .|..+.+ +.-.-.| ||.|.-......=.|.|
T Consensus 5 ~~V~v~~A~~L~~~d~~--g~~dPyv~v~~~~~~-----~kT~v~~---------~t~nP~W-ne~f~f~~~~~~~~l~i 67 (126)
T cd04046 5 TQVHVHSAEGLSKQDSG--GGADPYVIIKCEGES-----VRSPVQK---------DTLSPEF-DTQAIFYRKKPRSPIKI 67 (126)
T ss_pred EEEEEEeCcCCCCCCCC--CCcCccEEEEECCEE-----EEeCccC---------CCCCCcc-cceEEEEecCCCCEEEE
Confidence 56777788888665321 123467777765432 1222222 1224689 88897321112446889
Q ss_pred EEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEE
Q 005345 98 TIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFR 157 (701)
Q Consensus 98 tVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSls 157 (701)
.|+.--.. +. -.||.++++|.+.-... ..++.+.-.++.+.+...+ .|.|+++
T Consensus 68 ~V~d~~~~--~d--~~lG~~~~~l~~~~~~~-~~~~~l~~~~~~~~~~~~G--~i~~~~~ 120 (126)
T cd04046 68 QVWNSNLL--CD--EFLGQATLSADPNDSQT-LRTLPLRKRGRDAAGEVPG--TISVKVT 120 (126)
T ss_pred EEEECCCC--CC--CceEEEEEecccCCCcC-ceEEEcccCCCCCCCCCCC--EEEEEEE
Confidence 99964322 33 58999999999864333 2233332233335555554 4445544
No 26
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=79.56 E-value=15 Score=31.69 Aligned_cols=101 Identities=11% Similarity=0.110 Sum_probs=61.0
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH 96 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva 96 (701)
|+|.|.++.+|...... ......|.|+-+|.+ .+..+.++ |. .=.| +|.|... ..-..=.+.
T Consensus 2 ~~V~v~~a~~L~~~~~~--~~~dPyv~v~~~~~~-----~kT~v~~~-t~--------nP~W-ne~f~f~~~~~~~~~l~ 64 (116)
T cd08376 2 VTIVLVEGKNLPPMDDN--GLSDPYVKFRLGNEK-----YKSKVCSK-TL--------NPQW-LEQFDLHLFDDQSQILE 64 (116)
T ss_pred EEEEEEEEECCCCCCCC--CCCCcEEEEEECCEe-----EecccccC-CC--------CCce-eEEEEEEecCCCCCEEE
Confidence 56777788888776432 122456777765533 11223332 21 2359 8888833 211234678
Q ss_pred EEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeee
Q 005345 97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTV 141 (701)
Q Consensus 97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv 141 (701)
|+|+.-... .+-..||.+.++|+++... ...++-+||.-
T Consensus 65 v~v~d~~~~---~~~~~iG~~~~~l~~l~~~---~~~~~w~~L~~ 103 (116)
T cd08376 65 IEVWDKDTG---KKDEFIGRCEIDLSALPRE---QTHSLELELED 103 (116)
T ss_pred EEEEECCCC---CCCCeEEEEEEeHHHCCCC---CceEEEEEccC
Confidence 888865433 2346899999999998753 35677778763
No 27
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=79.41 E-value=7.6 Score=34.65 Aligned_cols=115 Identities=15% Similarity=0.132 Sum_probs=67.9
Q ss_pred EEEEEEeecCCCCCCCCh--------hhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccccc
Q 005345 18 AFTVIQRLEGFNIKQSDN--------EARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGH 89 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~--------~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k~~ 89 (701)
++|.|....+|....... .......|.|+..|.+.. +..++++ |. .=.| ||+|+-.-.
T Consensus 6 l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~----kT~~~~~-t~--------~P~W-ne~f~~~v~ 71 (132)
T cd04014 6 LKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIG----KTSTKPK-TN--------SPVW-NEEFTTEVH 71 (132)
T ss_pred EEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEe----EEeEcCC-CC--------CCCc-ceeEEEEcC
Confidence 566677888886543110 012346677777554321 2223331 22 2359 999994311
Q ss_pred ccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345 90 VFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL 158 (701)
Q Consensus 90 F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl 158 (701)
..=.+.|.|+....-+ +-.++|.++++|+++.....+ ..+.-+||. +...|||.|.+
T Consensus 72 -~~~~l~~~v~d~~~~~---~~~~iG~~~i~l~~l~~~~~~-~~~~w~~L~-------~~G~l~l~~~~ 128 (132)
T cd04014 72 -NGRNLELTVFHDAAIG---PDDFVANCTISFEDLIQRGSG-SFDLWVDLE-------PQGKLHVKIEL 128 (132)
T ss_pred -CCCEEEEEEEeCCCCC---CCceEEEEEEEhHHhcccCCC-cccEEEEcc-------CCcEEEEEEEE
Confidence 3457889998654333 225899999999999885222 456777775 33567777665
No 28
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=79.37 E-value=13 Score=32.00 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=61.7
Q ss_pred EEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEEE
Q 005345 19 FTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELHF 97 (701)
Q Consensus 19 ~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWevaF 97 (701)
+|.|..+.+|...... ......|.|+..|-+. .|..+++ +.-.-.| +|.|... ..-.-=.+.|
T Consensus 2 ~v~vi~a~~L~~~~~~--~~~dpyv~v~~~~~~~----~~T~v~~---------~~~~P~W-ne~f~~~~~~~~~~~l~~ 65 (115)
T cd04040 2 TVDVISAENLPSADRN--GKSDPFVKFYLNGEKV----FKTKTIK---------KTLNPVW-NESFEVPVPSRVRAVLKV 65 (115)
T ss_pred EEEEEeeeCCCCCCCC--CCCCCeEEEEECCCcc----eeeceec---------CCCCCcc-cccEEEEeccCCCCEEEE
Confidence 4556677777665321 1223456666655111 1112222 1224579 8988844 1111235677
Q ss_pred EEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccC
Q 005345 98 TIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEG 148 (701)
Q Consensus 98 tVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~ 148 (701)
.|++--+. .+-.+||.+.++|++.... ...+..+||.-.++-..+
T Consensus 66 ~v~d~~~~---~~~~~iG~~~~~l~~l~~~---~~~~~~~~L~~~g~~~~~ 110 (115)
T cd04040 66 EVYDWDRG---GKDDLLGSAYIDLSDLEPE---ETTELTLPLDGQGGGKLG 110 (115)
T ss_pred EEEeCCCC---CCCCceEEEEEEHHHcCCC---CcEEEEEECcCCCCccCc
Confidence 88865433 2345899999999998653 356788898766665443
No 29
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=77.82 E-value=25 Score=30.58 Aligned_cols=91 Identities=9% Similarity=0.030 Sum_probs=53.1
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH 96 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva 96 (701)
++|.|.+..+|...........-..|.|+.++.+ .|..+.++ |. .=.| ||.|+.. .....=.|.
T Consensus 3 l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~-----~kT~~~~~-t~--------~P~W-ne~f~~~~~~~~~~~l~ 67 (128)
T cd04024 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR-----FKTQTIPN-TL--------NPKW-NYWCEFPIFSAQNQLLK 67 (128)
T ss_pred EEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE-----EecceecC-Cc--------CCcc-CCcEEEEecCCCCCEEE
Confidence 4566778888775432001222456677765433 12223322 21 2469 8888843 222234678
Q ss_pred EEEEecCCcCcccceeEEEEEeeehhhhcc
Q 005345 97 FTIFNGLNQGQRQKVTAMGTATLNLAKYAN 126 (701)
Q Consensus 97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS 126 (701)
|+|+...+.+ +-.+||.+++.|++...
T Consensus 68 i~v~d~~~~~---~~~~lG~~~i~l~~~~~ 94 (128)
T cd04024 68 LILWDKDRFA---GKDYLGEFDIALEEVFA 94 (128)
T ss_pred EEEEECCCCC---CCCcceEEEEEHHHhhc
Confidence 8898666543 33589999999999874
No 30
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=77.66 E-value=27 Score=29.90 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=61.1
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc--cc-cccee
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS--GH-VFPWE 94 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k--~~-F~PWe 94 (701)
++|.|.++.||+.. ......|+|+-.|-+. .|..++++ -.=.| ||+|... .. ..-=.
T Consensus 2 L~v~vi~a~~l~~~-----~~~dpyv~v~~~~~~~----~kT~~~~~----------~~P~W-ne~f~f~v~~~~~~~~~ 61 (117)
T cd08383 2 LRLRILEAKNLPSK-----GTRDPYCTVSLDQVEV----ARTKTVEK----------LNPFW-GEEFVFDDPPPDVTFFT 61 (117)
T ss_pred eEEEEEEecCCCcC-----CCCCceEEEEECCEEe----EecceEEC----------CCCcc-cceEEEecCCccccEEE
Confidence 45667788888764 1335667777755221 12222221 12489 9999833 11 11235
Q ss_pred EEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345 95 LHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL 158 (701)
Q Consensus 95 vaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl 158 (701)
|.+.|++.. ...+-..+|++.|++.+.. ...+.-+||.-..+.....-.|||.++|
T Consensus 62 l~i~v~d~~---~~~~~~~~g~v~l~~~~~~-----~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 62 LSFYNKDKR---SKDRDIVIGKVALSKLDLG-----QGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEecc---cCCCeeEEEEEEecCcCCC-----CcceeEEECccCCCCCCcCceEEEEEEC
Confidence 566676543 3344468888888776651 1344455664333322334477777764
No 31
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=76.75 E-value=16 Score=28.45 Aligned_cols=81 Identities=15% Similarity=0.251 Sum_probs=51.1
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---cccccee
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFPWE 94 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~PWe 94 (701)
.+|.|+++.||+... ......+.|.|..-|... ...|..+++ +.....| +|+|.-. .....
T Consensus 1 L~v~I~~a~~L~~~~--~~~~~~~yv~v~~~~~~~--~~~~T~~~~---------~~~~P~w-~e~~~~~~~~~~~~~-- 64 (85)
T PF00168_consen 1 LTVTIHSARNLPSKD--SNGKPDPYVRVSVNGSES--TKYKTKVKK---------NTSNPVW-NEEFEFPLDDPDLDS-- 64 (85)
T ss_dssp EEEEEEEEESSSSSS--TTSSBEEEEEEEEETTTC--EEEEECCBS---------SBSSEEE-EEEEEEEESHGCGTE--
T ss_pred CEEEEEEEECCCCcc--cCCcccccceeecceeee--eeeeeeeee---------cccccee-eeeeeeeeecccccc--
Confidence 357788999998853 234567999999977655 112222222 2356899 8999922 22222
Q ss_pred EEEEEEecCCcCcccceeEEEEE
Q 005345 95 LHFTIFNGLNQGQRQKVTAMGTA 117 (701)
Q Consensus 95 vaFtVf~g~nqg~K~K~~v~Gta 117 (701)
|.|.|+..-..+. -.+||.|
T Consensus 65 l~~~V~~~~~~~~---~~~iG~~ 84 (85)
T PF00168_consen 65 LSFEVWDKDSFGK---DELIGEV 84 (85)
T ss_dssp EEEEEEEETSSSS---EEEEEEE
T ss_pred eEEEEEECCCCCC---CCEEEEE
Confidence 9999995544433 3588876
No 32
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=75.84 E-value=15 Score=33.55 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=54.9
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchh-hhhhhhhcccccCCCCCCceeeecCcccccc---ccccc
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGL-RRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFP 92 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~s-lrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~P 92 (701)
.+.|.|.++.+|...+.. ....-..|.|.- .|...-.. .|..++|+ | -.-.| ||.|.+. .-..=
T Consensus 16 ~L~V~V~~a~nL~~~d~~-~g~~dpYVkv~l-lp~~~~~~k~kT~v~~~-t--------~nPvf-NE~F~f~v~~~~l~~ 83 (128)
T cd08392 16 CLEITIKACRNLAYGDEK-KKKCHPYVKVCL-LPDKSHNSKRKTAVKKG-T--------VNPVF-NETLKYVVEADLLSS 83 (128)
T ss_pred EEEEEEEecCCCCccCCC-CCCCCeEEEEEE-EeCCcccceeecccccC-C--------CCCcc-ceEEEEEcCHHHhCC
Confidence 345556699998765321 012234555554 45422211 22334332 1 23579 9999965 12222
Q ss_pred eeEEEEEEecCCcCcccceeEEEEEeeehhhhcccc
Q 005345 93 WELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSD 128 (701)
Q Consensus 93 WevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a 128 (701)
-.|.|+|++-. ...++ .+||.+.+.|+++.-..
T Consensus 84 ~~L~v~V~~~~-~~~~~--~~lG~~~i~L~~~~~~~ 116 (128)
T cd08392 84 RQLQVSVWHSR-TLKRR--VFLGEVLIPLADWDFED 116 (128)
T ss_pred cEEEEEEEeCC-CCcCc--ceEEEEEEEcCCcccCC
Confidence 56889998632 33344 48999999999986554
No 33
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=75.38 E-value=15 Score=35.28 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=40.6
Q ss_pred eeeecCcccccc---ccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeee
Q 005345 76 VVQWNNQDFHYS---GHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLT 140 (701)
Q Consensus 76 ~VeW~~EEFe~k---~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLs 140 (701)
.-.| +|||.-. ..+.=.||.|++++..-+..+.+...+|-|.|-|.+ --.. -.+-+..||+.
T Consensus 71 ~P~f-~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~-~g~~-i~dg~~~L~v~ 135 (184)
T PF14429_consen 71 NPQF-NDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD-NGTI-IQDGEHELPVY 135 (184)
T ss_dssp S-EE-EEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB--TS-B---SEEEEEEEE
T ss_pred CCCc-cEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee-CCeE-ecCCCEEEEEE
Confidence 5789 9999944 667778999999999888777655799999999999 4432 22555566764
No 34
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=73.95 E-value=16 Score=32.88 Aligned_cols=93 Identities=12% Similarity=0.149 Sum_probs=52.3
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEecCcc-ccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccc
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLF-SFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFP 92 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk-~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~P 92 (701)
...|.|.++.+|...+ . ...-..|.|.- +|. ......|..++++ .-.-.| ||.|.+. ... .
T Consensus 13 ~L~V~Vi~ar~L~~~~-~--g~~dpYVkv~l-~p~~~~~~~~kT~v~~~---------t~~P~~-nE~F~f~v~~~~~-~ 77 (119)
T cd08685 13 KLTLHVLEAKGLRSTN-S--GTCNSYVKISL-SPDKEVRFRQKTSTVPD---------SANPLF-HETFSFDVNERDY-Q 77 (119)
T ss_pred EEEEEEEEEECCCCCC-C--CCCCeeEEEEE-EeCCCCcceEeCccccC---------CCCCcc-ccEEEEEcChHHh-C
Confidence 3455566999987753 1 12346777766 443 1111112222221 123579 9999954 112 2
Q ss_pred eeEEEEEEecCCcCcccceeEEEEEeeehhhhcc
Q 005345 93 WELHFTIFNGLNQGQRQKVTAMGTATLNLAKYAN 126 (701)
Q Consensus 93 WevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS 126 (701)
=.+.|+|++--. +.+.+ .+||.++|+|+++.+
T Consensus 78 ~~l~v~V~~~~~-~~~~~-~~lG~~~i~l~~~~~ 109 (119)
T cd08685 78 KRLLVTVWNKLS-KSRDS-GLLGCMSFGVKSIVN 109 (119)
T ss_pred CEEEEEEECCCC-CcCCC-EEEEEEEecHHHhcc
Confidence 257788875322 22222 599999999999974
No 35
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=73.05 E-value=19 Score=30.96 Aligned_cols=99 Identities=16% Similarity=0.249 Sum_probs=58.7
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH 96 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva 96 (701)
+.|.|+++.+|+.... ......+|.|+-.|.+ .|..++++ | -.=.| ||+|.-. ...+-=.|.
T Consensus 2 L~V~v~~A~~L~~~~~--~~~~dpyv~v~~~~~~-----~kT~v~~~-t--------~nP~W-ne~f~f~v~~~~~~~l~ 64 (105)
T cd04050 2 LFVYLDSAKNLPLAKS--TKEPSPYVELTVGKTT-----QKSKVKER-T--------NNPVW-EEGFTFLVRNPENQELE 64 (105)
T ss_pred EEEEEeeecCCCCccc--CCCCCcEEEEEECCEE-----EeCccccC-C--------CCCcc-cceEEEEeCCCCCCEEE
Confidence 3577889999877532 2234567777775522 11222221 1 23579 9999933 111112588
Q ss_pred EEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeee
Q 005345 97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLT 140 (701)
Q Consensus 97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLs 140 (701)
|+|+.-.. . .+||.+.++|++..... ...++.-.||.
T Consensus 65 v~v~d~~~----~--~~iG~~~i~l~~l~~~~-~~~~~~w~~L~ 101 (105)
T cd04050 65 IEVKDDKT----G--KSLGSLTLPLSELLKEP-DLTLDQPFPLD 101 (105)
T ss_pred EEEEECCC----C--CccEEEEEEHHHhhccc-cceeeeeEecC
Confidence 99985432 2 48999999999998654 22355556654
No 36
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=72.19 E-value=19 Score=34.00 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=55.2
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH 96 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva 96 (701)
++|.|.+..+|..... ......|.|+..+++ .|.++.+| | -.=.| +|+|.-. ... ...|.
T Consensus 4 L~V~Vi~a~nL~~~d~---~~sDPYV~v~~g~~~-----~kT~vvk~-t--------~nP~W-nE~f~f~i~~~-~~~l~ 64 (145)
T cd04038 4 LKVRVVRGTNLAVRDF---TSSDPYVVLTLGNQK-----VKTRVIKK-N--------LNPVW-NEELTLSVPNP-MAPLK 64 (145)
T ss_pred EEEEEEeeECCCCCCC---CCcCcEEEEEECCEE-----EEeeeEcC-C--------CCCee-cccEEEEecCC-CCEEE
Confidence 5666778888765432 233466777764432 12222221 1 12489 9999844 111 55688
Q ss_pred EEEEecCCcCcccceeEEEEEeeehhhhcccccc
Q 005345 97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKE 130 (701)
Q Consensus 97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~e 130 (701)
|.|+.-..-+ +. -+||.+.++|.++..+.+-
T Consensus 65 ~~V~D~d~~~-~d--d~iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 65 LEVFDKDTFS-KD--DSMGEAEIDLEPLVEAAKL 95 (145)
T ss_pred EEEEECCCCC-CC--CEEEEEEEEHHHhhhhhhh
Confidence 9999554332 22 4899999999999987644
No 37
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=71.65 E-value=19 Score=34.40 Aligned_cols=96 Identities=10% Similarity=0.079 Sum_probs=54.0
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeE
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWEL 95 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWev 95 (701)
...|.|.++.+|..... .....-..|-|.-..-+......+..++|+ .-.=.| ||+|.+. . ..=-.|
T Consensus 30 ~L~V~Vi~ArnL~~~~~-~~g~sDPYVKv~Llp~~~~~~k~KT~v~kk---------tlnPvf-NE~F~f~v~-l~~~~L 97 (146)
T cd04028 30 QLEVEVIRARGLVQKPG-SKVLPAPYVKVYLLEGKKCIAKKKTKIARK---------TLDPLY-QQQLVFDVS-PTGKTL 97 (146)
T ss_pred EEEEEEEEeeCCCcccC-CCCCcCCeEEEEEECCCccccceeceecCC---------CCCCcc-CCeEEEEEc-CCCCEE
Confidence 45666669988876421 111122455555432222222222222221 112469 9999977 4 344468
Q ss_pred EEEEEecCCcCcccceeEEEEEeeehhhhcc
Q 005345 96 HFTIFNGLNQGQRQKVTAMGTATLNLAKYAN 126 (701)
Q Consensus 96 aFtVf~g~nqg~K~K~~v~GtasLNLAEyAS 126 (701)
.|+|++.-....++ .+||.+.+.|.++..
T Consensus 98 ~v~V~~d~~~~~~~--~~iG~~~i~L~~l~~ 126 (146)
T cd04028 98 QVIVWGDYGRMDKK--VFMGVAQILLDDLDL 126 (146)
T ss_pred EEEEEeCCCCCCCC--ceEEEEEEEcccccC
Confidence 89999654444444 489999999998743
No 38
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=69.51 E-value=23 Score=31.46 Aligned_cols=99 Identities=11% Similarity=0.150 Sum_probs=57.8
Q ss_pred EEEEEEeecCCCCCCCChhh--hceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc--ccccce
Q 005345 18 AFTVIQRLEGFNIKQSDNEA--RQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS--GHVFPW 93 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~--~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k--~~F~PW 93 (701)
+.|.|.++.+|......... ..-..|+|.-.+.+ .|..+.++ .-.=.| ||.|... ..-...
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~-----~kT~v~~~---------t~nPvW-ne~f~f~v~~~~~~~ 67 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV-----FRTSWRRH---------TLNPVF-NERLAFEVYPHEKNF 67 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe-----EeeeeecC---------CCCCcc-cceEEEEEeCccCCC
Confidence 45667788888775321000 12345666653221 12222221 123479 8999844 333456
Q ss_pred eEEEEEEecCCcCcccceeEEEEEeeehhhhccccccccee
Q 005345 94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQ 134 (701)
Q Consensus 94 evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~e 134 (701)
.|.|.|+.-... .++ -+||.++|+|+++.....+++-|
T Consensus 68 ~L~~~V~D~d~~-~~d--d~IG~~~l~L~~l~~~~~~~~~~ 105 (108)
T cd04039 68 DIQFKVLDKDKF-SFN--DYVATGSLSVQELLNAAPQPDPE 105 (108)
T ss_pred EEEEEEEECCCC-CCC--cceEEEEEEHHHHHhhCCCCCCc
Confidence 788999854332 233 48999999999999888775544
No 39
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=68.61 E-value=27 Score=30.50 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=52.6
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCcc-ccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccce
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLF-SFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFPW 93 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk-~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~PW 93 (701)
+.|.|.++.+|...... ......|.|.- +|. ......|..+++| ...-.| ||.|... ....-=
T Consensus 18 L~V~vi~a~~L~~~~~~--~~~dpyv~v~l-~~~~~~~~~~kT~v~~~---------~~nP~w-ne~f~f~i~~~~l~~~ 84 (127)
T cd04030 18 LIVTVHKCRNLPPCDSS--DIPDPYVRLYL-LPDKSKSTRRKTSVKKD---------NLNPVF-DETFEFPVSLEELKRR 84 (127)
T ss_pred EEEEEEEEECCCCccCC--CCCCceEEEEE-EcCCCCCceEecccccC---------CCCCEE-CeEEEEecCHHHhcCC
Confidence 44556688888776421 22345666665 332 1111112223221 224689 9988843 222223
Q ss_pred eEEEEEEecCCc-CcccceeEEEEEeeehhhhccc
Q 005345 94 ELHFTIFNGLNQ-GQRQKVTAMGTATLNLAKYANS 127 (701)
Q Consensus 94 evaFtVf~g~nq-g~K~K~~v~GtasLNLAEyAS~ 127 (701)
.+.|+|++...- +.++ .+||.+.++|+++...
T Consensus 85 ~l~i~v~~~~~~~~~~~--~~iG~~~i~l~~l~~~ 117 (127)
T cd04030 85 TLDVAVKNSKSFLSREK--KLLGQVLIDLSDLDLS 117 (127)
T ss_pred EEEEEEEECCcccCCCC--ceEEEEEEeccccccc
Confidence 677888865432 1233 5999999999997543
No 40
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=68.36 E-value=42 Score=26.30 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=55.2
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH 96 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva 96 (701)
+.+.|...+++...... ......|.|+..+.. . ....|+... +...-.| +|+|... ....-=.|.
T Consensus 2 l~i~i~~~~~l~~~~~~--~~~~~yv~v~~~~~~--~-------~~~~T~~~~--~~~~P~w-~e~~~~~~~~~~~~~l~ 67 (101)
T smart00239 2 LTVKIISARNLPKKDKK--GKSDPYVKVSLDGDP--K-------EKKKTKVVK--NTLNPVW-NETFEFEVPPPELAELE 67 (101)
T ss_pred eEEEEEEeeCCCCCCCC--CCCCceEEEEEeCCc--c-------ceEeeeEec--CCCCCcc-cceEEEEecCcccCEEE
Confidence 34556677777665321 233566667775554 1 111222111 1225799 8899843 111145677
Q ss_pred EEEEecCCcCcccceeEEEEEeeehhhhcccc
Q 005345 97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANSD 128 (701)
Q Consensus 97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a 128 (701)
|+||+....+ +...+|.+.+.|+++....
T Consensus 68 i~v~~~~~~~---~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 68 IEVYDKDRFG---RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred EEEEecCCcc---CCceeEEEEEEHHHcccCc
Confidence 8888776655 4469999999999886654
No 41
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=67.01 E-value=26 Score=31.60 Aligned_cols=97 Identities=14% Similarity=0.129 Sum_probs=53.9
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEecCcc-ccchhhhhhhhhcccccCCCCCCceeeecCcccccc-c--cccc
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLF-SFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-G--HVFP 92 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk-~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~--~F~P 92 (701)
.+.|+|.++.+|...... .......|.|.- .|. ......|.++++| | -.-.| ||.|... . -..=
T Consensus 16 ~L~V~Vi~a~~L~~~~~~-~~~~DpyVkv~l-~p~~~~~~~~kT~v~~~-t--------~nP~w-nE~f~f~i~~~~l~~ 83 (125)
T cd04029 16 SLNVHVKECRNLAYGDEA-KKRSNPYVKTYL-LPDKSRQSKRKTSIKRN-T--------TNPVY-NETLKYSISHSQLET 83 (125)
T ss_pred eEEEEEEEecCCCccCCC-CCCCCcEEEEEE-EcCCccccceEeeeeeC-C--------CCCcc-cceEEEECCHHHhCC
Confidence 356666799998765321 011234555544 343 2121122233331 1 23579 9998854 1 1111
Q ss_pred eeEEEEEEecCCcCcccceeEEEEEeeehhhhcccc
Q 005345 93 WELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSD 128 (701)
Q Consensus 93 WevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a 128 (701)
=.|.|+|++-. ...|+ .+||.+.++|++|....
T Consensus 84 ~~L~~~V~d~~-~~~~~--~~lG~~~i~l~~~~~~~ 116 (125)
T cd04029 84 RTLQLSVWHYD-RFGRN--TFLGEVEIPLDSWNFDS 116 (125)
T ss_pred CEEEEEEEECC-CCCCC--cEEEEEEEeCCcccccC
Confidence 24889999633 22333 48999999999998875
No 42
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=66.54 E-value=29 Score=31.16 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=54.0
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCcc-ccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccce
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLF-SFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFPW 93 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk-~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~PW 93 (701)
+.|.|.++.+|...+.. .......|.|.- .|. ....-.|..+++ +.-.-.| ||.|... .-..-=
T Consensus 17 L~V~vi~a~~L~~~d~~-~g~~dpyVkv~l-~p~~~~~~~~kT~v~~---------~t~nP~~-nE~f~f~v~~~~l~~~ 84 (125)
T cd08393 17 LHVHVIQCQDLAAADPK-KQRSDPYVKTYL-LPDKSNRGKRKTSVKK---------KTLNPVF-NETLRYKVEREELPTR 84 (125)
T ss_pred EEEEEEEeCCCCCcCCC-CCCCCcEEEEEE-EcCCCccccccCccCc---------CCCCCcc-CceEEEECCHHHhCCC
Confidence 45556699998776421 112345666665 332 111112223332 1123579 8989843 223334
Q ss_pred eEEEEEEecCCcCcccceeEEEEEeeehhhhccc
Q 005345 94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANS 127 (701)
Q Consensus 94 evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~ 127 (701)
.|.|+|+... ...++ .+||-+.+.|+++...
T Consensus 85 ~L~~~V~d~~-~~~~~--~~iG~~~i~L~~~~~~ 115 (125)
T cd08393 85 VLNLSVWHRD-SLGRN--SFLGEVEVDLGSWDWS 115 (125)
T ss_pred EEEEEEEeCC-CCCCC--cEeEEEEEecCccccC
Confidence 5889999743 23344 4899999999999655
No 43
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=65.90 E-value=59 Score=29.40 Aligned_cols=123 Identities=11% Similarity=0.135 Sum_probs=66.1
Q ss_pred eEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc--ccc---
Q 005345 16 YEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS--GHV--- 90 (701)
Q Consensus 16 f~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k--~~F--- 90 (701)
|+++|+|.+..+|...... ......|.|.-.|.+ .|..+.+| .-.=.| +|.|... ...
T Consensus 1 ~~l~v~V~~a~~L~~~d~~--g~~dpyv~v~~~~~~-----~kT~v~~~---------t~nP~W-ne~~~f~~~~~~~~~ 63 (135)
T cd04017 1 FQLRAYIYQARDLLAADKS--GLSDPFARVSFLNQS-----QETEVIKE---------TLSPTW-DQTLIFDEVELYGSP 63 (135)
T ss_pred CEEEEEEEEeecCcCCCCC--CCCCCEEEEEECCee-----eEeeeEcC---------CCCCcc-CcEEEEeeeeccCCh
Confidence 7899999999998775422 122345555543221 11112221 123579 8888743 111
Q ss_pred -----cceeEEEEEEecCCcCcccceeEEEEEeeeh-hhhcccccccceeeeeeeeecCCCccCCceeeeEEEeeee
Q 005345 91 -----FPWELHFTIFNGLNQGQRQKVTAMGTATLNL-AKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRLIES 161 (701)
Q Consensus 91 -----~PWevaFtVf~g~nqg~K~K~~v~GtasLNL-AEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl~El 161 (701)
.|=.+.|+|+.-.+. .++ -+||.+.+.+ ..+...-.......=.||.-.+ ....-|+|+++|+++
T Consensus 64 ~~~~~~~~~l~v~V~d~d~~-~~d--~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~---~~~Geil~~~~~~~~ 134 (135)
T cd04017 64 EEIAQNPPLVVVELFDQDSV-GKD--EFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG---QSAGELLAAFELIEV 134 (135)
T ss_pred HHhhcCCCEEEEEEEeCcCC-CCC--ccceEEEeeeeeecccCCCCCCCceEEEeecCC---CchhheeEEeEEEEe
Confidence 123688999854332 222 5899998743 2222110111333445665333 245678999999876
No 44
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=64.75 E-value=72 Score=28.43 Aligned_cols=102 Identities=11% Similarity=0.089 Sum_probs=56.0
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeE
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWEL 95 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWev 95 (701)
+++|.|..+.+|...... .....+|.|.-.| . .+. .|+-. .+.-.=.| ||+|... .. -=.|
T Consensus 1 ~l~v~v~~A~~L~~~~~~--~~~dpyv~v~~~~-~--------~~~--kT~v~--~~t~nP~W-ne~f~~~~~~--~~~l 62 (123)
T cd08382 1 KVRLTVLCADGLAKRDLF--RLPDPFAVITVDG-G--------QTH--STDVA--KKTLDPKW-NEHFDLTVGP--SSII 62 (123)
T ss_pred CeEEEEEEecCCCccCCC--CCCCcEEEEEECC-c--------cce--EccEE--cCCCCCcc-cceEEEEeCC--CCEE
Confidence 366777788888665321 1223445555444 1 011 12210 11224589 9999933 11 1268
Q ss_pred EEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeee
Q 005345 96 HFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPL 139 (701)
Q Consensus 96 aFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPL 139 (701)
.|.|+.--..+. +.-.+||.+.++|.|+...... ....+||
T Consensus 63 ~i~V~d~~~~~~-~~d~~lG~~~i~l~~l~~~~~~--~~~~~~l 103 (123)
T cd08382 63 TIQVFDQKKFKK-KDQGFLGCVRIRANAVLPLKDT--GYQRLDL 103 (123)
T ss_pred EEEEEECCCCCC-CCCceEeEEEEEHHHccccCCC--ccceeEe
Confidence 888986433332 2246999999999998755432 2334566
No 45
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=63.53 E-value=28 Score=30.43 Aligned_cols=92 Identities=10% Similarity=0.079 Sum_probs=52.7
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccce
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFPW 93 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~PW 93 (701)
.+.|.|.++.+|..... .......|.|.-.+.......-|..+++ +...-.| +|+|... ..+.-=
T Consensus 15 ~L~V~v~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~~T~~~~---------~~~~P~w-ne~f~f~i~~~~l~~~ 82 (134)
T cd00276 15 RLTVVVLKARNLPPSDG--KGLSDPYVKVSLLQGGKKLKKKKTSVKK---------GTLNPVF-NEAFSFDVPAEQLEEV 82 (134)
T ss_pred EEEEEEEEeeCCCCccC--CCCCCcEEEEEEEcCCeEeeeecCccee---------cCCCCee-eeeEEEECCHHHhCCc
Confidence 35555668888876532 1233567777775543222111112222 2235789 8988833 222224
Q ss_pred eEEEEEEecCCcCcccceeEEEEEeeehhh
Q 005345 94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAK 123 (701)
Q Consensus 94 evaFtVf~g~nqg~K~K~~v~GtasLNLAE 123 (701)
.|.|.|+.-.+. .+-.+||.+.+.|++
T Consensus 83 ~l~~~v~d~~~~---~~~~~lG~~~i~l~~ 109 (134)
T cd00276 83 SLVITVVDKDSV---GRNEVIGQVVLGPDS 109 (134)
T ss_pred EEEEEEEecCCC---CCCceeEEEEECCCC
Confidence 578888865554 233589999999999
No 46
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=63.14 E-value=79 Score=27.15 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=60.5
Q ss_pred EEEEEEeecCCCCCCCCh----hhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccc
Q 005345 18 AFTVIQRLEGFNIKQSDN----EARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFP 92 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~----~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~P 92 (701)
++|.|.++.+|....... .......|.|+-.|.+ .+..+.+| | -.=.| +|.|.-. ..-.-
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~-----~kT~~~~~-t--------~~P~W-~e~f~~~v~~~~~ 67 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQT-----FKSKVIKE-N--------LNPKW-NEVYEAVVDEVPG 67 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEe-----EEccccCC-C--------CCCcc-cceEEEEeCCCCC
Confidence 456677888876653110 0112355666654421 12222222 1 12469 8889832 11122
Q ss_pred eeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEE
Q 005345 93 WELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFR 157 (701)
Q Consensus 93 WevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSls 157 (701)
=.|.|+|+.--.. + -.+||.+.++|+++.... ..+.-+||.-. ...-|||.++
T Consensus 68 ~~l~i~v~d~~~~--~--~~~iG~~~i~l~~l~~~~---~~~~w~~L~~~-----~~G~~~~~~~ 120 (121)
T cd08391 68 QELEIELFDEDPD--K--DDFLGRLSIDLGSVEKKG---FIDEWLPLEDV-----KSGRLHLKLE 120 (121)
T ss_pred CEEEEEEEecCCC--C--CCcEEEEEEEHHHhcccC---ccceEEECcCC-----CCceEEEEEe
Confidence 3678888854332 3 358999999999987532 34565666421 3345566554
No 47
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=62.68 E-value=55 Score=29.67 Aligned_cols=107 Identities=12% Similarity=0.113 Sum_probs=58.0
Q ss_pred eEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCccccc-c-c--ccc
Q 005345 16 YEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHY-S-G--HVF 91 (701)
Q Consensus 16 f~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~-k-~--~F~ 91 (701)
-.+.|.|.++.+|+..... ....-.+|.|.- +|... ...|..+++| | -.-.| ||.|.. . . -..
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~-~~~~DpyV~v~l-~~~~~-~~~kT~v~~~-t--------~nP~w-nE~F~f~~~~~~~~~ 82 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQ-SGTSDPYVKLQL-LPEKE-HKVKTRVLRK-T--------RNPVY-DETFTFYGIPYNQLQ 82 (128)
T ss_pred CEEEEEEEEeECCCCCCCC-CCCcCCEEEEEE-eCCcC-ceeeccEEcC-C--------CCCce-eeEEEEcccCHHHhC
Confidence 3456666699999876421 112234555554 44311 0112223332 1 23579 999983 2 1 111
Q ss_pred ceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeee
Q 005345 92 PWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPL 139 (701)
Q Consensus 92 PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPL 139 (701)
-=.|.|+|+.-- .-.++ .+||.+.+.|++.-..-++ ++..-+||
T Consensus 83 ~~~L~~~V~d~d-~~~~d--~~lG~~~i~L~~l~~~~~~-~~~~~~~~ 126 (128)
T cd08388 83 DLSLHFAVLSFD-RYSRD--DVIGEVVCPLAGADLLNEG-ELLVSREI 126 (128)
T ss_pred CCEEEEEEEEcC-CCCCC--ceeEEEEEeccccCCCCCc-eEEEEEec
Confidence 124788888642 22233 4899999999988665434 45555554
No 48
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=62.20 E-value=81 Score=28.23 Aligned_cols=93 Identities=12% Similarity=0.194 Sum_probs=50.4
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCccccccccccceeEEE
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHVFPWELHF 97 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k~~F~PWevaF 97 (701)
++|.|.+.+||...... ...-..|.|+-. .+. .|..+.+| | -.=.| +|+|.....-..=.+.|
T Consensus 3 L~V~vi~a~~L~~~d~~--g~~DPyv~v~~~-~~~----~kT~~v~~-t--------~~P~W-ne~f~f~~~~~~~~l~i 65 (127)
T cd04027 3 ISITVVCAQGLIAKDKT--GTSDPYVTVQVG-KTK----KRTKTIPQ-N--------LNPVW-NEKFHFECHNSSDRIKV 65 (127)
T ss_pred EEEEEEECcCCcCCCCC--CCcCcEEEEEEC-CEe----eecceecC-C--------CCCcc-ceEEEEEecCCCCEEEE
Confidence 45566799998776421 112345666653 221 12112221 1 12469 99998431111235788
Q ss_pred EEEecCCcC--------cccceeEEEEEeeehhhhccc
Q 005345 98 TIFNGLNQG--------QRQKVTAMGTATLNLAKYANS 127 (701)
Q Consensus 98 tVf~g~nqg--------~K~K~~v~GtasLNLAEyAS~ 127 (701)
.|+...... .+.+--.+|.+.++|++....
T Consensus 66 ~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~~ 103 (127)
T cd04027 66 RVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGE 103 (127)
T ss_pred EEEECCCCcccccceeccccCCCcceEEEEEhHHccCC
Confidence 898643211 123445899999999987543
No 49
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=62.18 E-value=37 Score=29.71 Aligned_cols=93 Identities=10% Similarity=-0.017 Sum_probs=52.6
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccce
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFPW 93 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~PW 93 (701)
.+.|.|.++.+|...... ......|.|.-. |...- ..|..+.+ +.-.-.| ||.|... ..+.-=
T Consensus 17 ~L~V~v~~a~~L~~~d~~--~~~dpyv~v~l~-~~~~~-~~kT~v~~---------~t~nP~w-ne~f~f~i~~~~l~~~ 82 (124)
T cd08385 17 QLTVGIIQAADLPAMDMG--GTSDPYVKVYLL-PDKKK-KFETKVHR---------KTLNPVF-NETFTFKVPYSELGNK 82 (124)
T ss_pred EEEEEEEEeeCCCCccCC--CCCCCEEEEEEE-cCCCC-ceecccCc---------CCCCCce-eeeEEEeCCHHHhCCC
Confidence 455666699998765422 123456666653 33110 11222222 1224689 9999843 122223
Q ss_pred eEEEEEEecCCcCcccceeEEEEEeeehhhhcc
Q 005345 94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYAN 126 (701)
Q Consensus 94 evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS 126 (701)
.|.|.|+.--..+ +-.+||.+.+.|++...
T Consensus 83 ~l~~~V~d~d~~~---~~~~lG~~~i~l~~~~~ 112 (124)
T cd08385 83 TLVFSVYDFDRFS---KHDLIGEVRVPLLTVDL 112 (124)
T ss_pred EEEEEEEeCCCCC---CCceeEEEEEecCcccC
Confidence 6889999643322 22499999999999755
No 50
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=60.06 E-value=98 Score=28.52 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=57.7
Q ss_pred hceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc--ccccceeEEEEEEecCCcCcccceeEEE
Q 005345 38 RQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS--GHVFPWELHFTIFNGLNQGQRQKVTAMG 115 (701)
Q Consensus 38 ~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k--~~F~PWevaFtVf~g~nqg~K~K~~v~G 115 (701)
+....|.|+..+.+. |..+.+|-|. .=.| ||+|+-. ... =.|.|+||..-. -++-.+||
T Consensus 21 ~sDPYv~i~lg~~~~-----kT~v~~~~~~--------nP~W-Ne~F~f~v~~~~--~~l~~~V~d~d~---~~~dd~iG 81 (121)
T cd04016 21 RMDPYCRIRVGHAVY-----ETPTAYNGAK--------NPRW-NKTIQCTLPEGV--DSIYIEIFDERA---FTMDERIA 81 (121)
T ss_pred CCCceEEEEECCEEE-----EeEEccCCCC--------CCcc-CeEEEEEecCCC--cEEEEEEEeCCC---CcCCceEE
Confidence 345678888855431 2122222111 3479 9999933 112 358899986443 22335899
Q ss_pred EEeeehhh-hcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345 116 TATLNLAK-YANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL 158 (701)
Q Consensus 116 tasLNLAE-yAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl 158 (701)
.+++.|.+ +..- ..++.-+||.=..+. ....-|||+|++
T Consensus 82 ~~~i~l~~~~~~g---~~~~~W~~L~~~~~~-~~~g~i~l~l~y 121 (121)
T cd04016 82 WTHITIPESVFNG---ETLDDWYSLSGKQGE-DKEGMINLVFSY 121 (121)
T ss_pred EEEEECchhccCC---CCccccEeCcCccCC-CCceEEEEEEeC
Confidence 99999975 4432 246666787644433 345788888874
No 51
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=59.80 E-value=35 Score=29.89 Aligned_cols=94 Identities=14% Similarity=0.215 Sum_probs=55.3
Q ss_pred eEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEEEEEEecCCcCcccceeEEEEEe
Q 005345 40 RLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELHFTIFNGLNQGQRQKVTAMGTAT 118 (701)
Q Consensus 40 ~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWevaFtVf~g~nqg~K~K~~v~Gtas 118 (701)
...|.|+..|.+.. |..++++ |. .=.| ||.|+-. ..-.-=.|.|.|+..-.- + -.+||.+.
T Consensus 14 dPYv~v~v~~~~~~----kT~v~~~-t~--------nP~W-ne~f~f~v~~~~~~~l~i~v~d~~~~--~--d~~iG~~~ 75 (111)
T cd04052 14 SPYAELYLNGKLVY----TTRVKKK-TN--------NPSW-NASTEFLVTDRRKSRVTVVVKDDRDR--H--DPVLGSVS 75 (111)
T ss_pred CceEEEEECCEEEE----EEeeecc-CC--------CCcc-CCceEEEecCcCCCEEEEEEEECCCC--C--CCeEEEEE
Confidence 56888888663211 2223331 22 2359 9999833 111123478888865433 3 35999999
Q ss_pred eehhhhcccccccceeeeeeeeecCCCccCCceeeeEEEe
Q 005345 119 LNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFRL 158 (701)
Q Consensus 119 LNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSlsl 158 (701)
++|++...... ..+.-+||. + -....|++++.+
T Consensus 76 v~L~~l~~~~~--~~~~w~~L~--~---~~~G~i~~~~~~ 108 (111)
T cd04052 76 ISLNDLIDATS--VGQQWFPLS--G---NGQGRIRISALW 108 (111)
T ss_pred ecHHHHHhhhh--ccceeEECC--C---CCCCEEEEEEEE
Confidence 99999965432 244555654 2 245778888876
No 52
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=58.57 E-value=40 Score=29.99 Aligned_cols=91 Identities=13% Similarity=0.161 Sum_probs=50.2
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEecCcc-ccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccc
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLF-SFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFP 92 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk-~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~P 92 (701)
.+.|.|.++.||...... ......|.|.-. |. ......|..+++ +.-.-.| ||.|... .....
T Consensus 14 ~L~V~Vi~a~~L~~~d~~--~~~DpyV~v~l~-~~~~~~~~~kT~v~~---------~t~nP~w-ne~f~f~~~~~~l~~ 80 (133)
T cd08384 14 GLIVGIIRCVNLAAMDAN--GYSDPFVKLYLK-PDAGKKSKHKTQVKK---------KTLNPEF-NEEFFYDIKHSDLAK 80 (133)
T ss_pred EEEEEEEEEcCCCCcCCC--CCCCcEEEEEEE-cCCCccCCceeeeEe---------ccCCCCc-ccEEEEECCHHHhCC
Confidence 345556688888775422 122356666653 32 111111222332 1123589 9999844 22223
Q ss_pred eeEEEEEEecCCcCcccceeEEEEEeeehhh
Q 005345 93 WELHFTIFNGLNQGQRQKVTAMGTATLNLAK 123 (701)
Q Consensus 93 WevaFtVf~g~nqg~K~K~~v~GtasLNLAE 123 (701)
=.|.|+|+.- +...+. .+||.+.++|++
T Consensus 81 ~~l~~~V~d~-d~~~~~--~~lG~~~i~l~~ 108 (133)
T cd08384 81 KTLEITVWDK-DIGKSN--DYIGGLQLGINA 108 (133)
T ss_pred CEEEEEEEeC-CCCCCc--cEEEEEEEecCC
Confidence 4588999953 333333 489999999975
No 53
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=57.35 E-value=50 Score=28.62 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=51.8
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEecCcc-ccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccc
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLF-SFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFP 92 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk-~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~P 92 (701)
.+.|.|.++.+|..... ........|.|.-. |. .....-+..+++| .-.-.| ||+|... ....-
T Consensus 15 ~L~V~v~~a~~L~~~~~-~~~~~dpyv~v~l~-~~~~~~~~~kT~v~~~---------t~~P~w-ne~f~f~i~~~~l~~ 82 (123)
T cd08521 15 SLEVHIKECRNLAYADE-KKKRSNPYVKVYLL-PDKSKQSKRKTSVKKN---------TTNPVF-NETLKYHISKSQLET 82 (123)
T ss_pred EEEEEEEEecCCCCcCC-CCCCCCcEEEEEEe-cCCCcCceeeccccCC---------CCCCcc-cceEEEeCCHHHhCC
Confidence 34555668888876531 11122345555542 33 2111112223322 223589 9988843 22223
Q ss_pred eeEEEEEEecCCcCcccceeEEEEEeeehhhhccc
Q 005345 93 WELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANS 127 (701)
Q Consensus 93 WevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~ 127 (701)
=.|.|.|++.-.. .++ .+||.+.++|+++...
T Consensus 83 ~~l~i~v~d~~~~-~~~--~~iG~~~i~l~~l~~~ 114 (123)
T cd08521 83 RTLQLSVWHHDRF-GRN--TFLGEVEIPLDSWDLD 114 (123)
T ss_pred CEEEEEEEeCCCC-cCC--ceeeEEEEeccccccc
Confidence 4688888864322 233 5899999999999643
No 54
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=55.49 E-value=76 Score=27.60 Aligned_cols=92 Identities=16% Similarity=0.185 Sum_probs=51.7
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc----ccccc
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS----GHVFP 92 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k----~~F~P 92 (701)
.+.|.|.++.+|...... ......|.|.-.+........|..+.+ +.-.=.| ||.|... ....-
T Consensus 17 ~L~V~vi~a~~L~~~~~~--~~~dpyv~v~l~~~~~~~~~~kT~v~~---------~t~nP~w-ne~f~f~~~~~~~l~~ 84 (125)
T cd04031 17 QLIVTVLQARDLPPRDDG--SLRNPYVKVYLLPDRSEKSKRRTKTVK---------KTLNPEW-NQTFEYSNVRRETLKE 84 (125)
T ss_pred EEEEEEEEecCCCCcCCC--CCCCCEEEEEEccCCCccccccccccC---------CCCCCcc-ccEEEEcccCHHHhCC
Confidence 356666799998776422 223467777764322211111222222 1123579 8998832 11223
Q ss_pred eeEEEEEEecCCcCcccceeEEEEEeeehhh
Q 005345 93 WELHFTIFNGLNQGQRQKVTAMGTATLNLAK 123 (701)
Q Consensus 93 WevaFtVf~g~nqg~K~K~~v~GtasLNLAE 123 (701)
=.|.|+|+.-.+. .++ .+||.+.+.|++
T Consensus 85 ~~l~~~V~d~~~~-~~~--~~iG~~~i~l~~ 112 (125)
T cd04031 85 RTLEVTVWDYDRD-GEN--DFLGEVVIDLAD 112 (125)
T ss_pred CEEEEEEEeCCCC-CCC--cEeeEEEEeccc
Confidence 4688999864332 223 489999999999
No 55
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=54.51 E-value=62 Score=30.99 Aligned_cols=92 Identities=20% Similarity=0.195 Sum_probs=53.9
Q ss_pred EEEEEeecCCCCCCCCh------------hhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCccccc
Q 005345 19 FTVIQRLEGFNIKQSDN------------EARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHY 86 (701)
Q Consensus 19 ~lvv~rleG~~~~~~~~------------~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~ 86 (701)
.|.|.+++.|+.++... ....-..|+|..-|.+ .+..+.+| .-.-.| ||+|.-
T Consensus 3 ~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~-----~kT~v~~~---------t~nPvW-NE~f~f 67 (151)
T cd04018 3 IFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK-----VKTSVKKN---------SYNPEW-NEQIVF 67 (151)
T ss_pred EEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe-----eecceEcC---------CCCCCc-ceEEEE
Confidence 34566999988865211 1123567778775432 23333332 123689 999983
Q ss_pred c-ccccc-eeEEEEEEecCCcCcccceeEEEEEeeehhhhcccc
Q 005345 87 S-GHVFP-WELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSD 128 (701)
Q Consensus 87 k-~~F~P-WevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a 128 (701)
- ..-.+ =.|.|+|+..-.-+ ++ -+||++.|+|+++.+.-
T Consensus 68 ~v~~p~~~~~l~~~v~D~d~~~-~d--d~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 68 PEMFPPLCERIKIQIRDWDRVG-ND--DVIGTHFIDLSKISNSG 108 (151)
T ss_pred EeeCCCcCCEEEEEEEECCCCC-CC--CEEEEEEEeHHHhccCC
Confidence 2 10000 25778888654432 33 58999999999997754
No 56
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=54.25 E-value=56 Score=28.70 Aligned_cols=90 Identities=10% Similarity=0.142 Sum_probs=51.5
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH 96 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva 96 (701)
++|.|.++.+|...... ......|.|.-+|.+ .+..+.+| | ..=.| +|.|... ..-..=.|.
T Consensus 2 L~v~vi~a~~L~~~d~~--~~~DPyv~v~~~~~~-----~kT~v~~~-t--------~nP~W-ne~f~f~~~~~~~~~l~ 64 (123)
T cd04025 2 LRCHVLEARDLAPKDRN--GTSDPFVRVFYNGQT-----LETSVVKK-S--------CYPRW-NEVFEFELMEGADSPLS 64 (123)
T ss_pred EEEEEEEeeCCCCCCCC--CCcCceEEEEECCEE-----EeceeecC-C--------CCCcc-CcEEEEEcCCCCCCEEE
Confidence 34555566776554311 122457777765543 12222221 1 12469 9999843 221234588
Q ss_pred EEEEecCCcCcccceeEEEEEeeehhhhccc
Q 005345 97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANS 127 (701)
Q Consensus 97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~ 127 (701)
|+|+.-...+ +-.+||.+++.|++....
T Consensus 65 ~~v~d~~~~~---~~~~iG~~~~~l~~l~~~ 92 (123)
T cd04025 65 VEVWDWDLVS---KNDFLGKVVFSIQTLQQA 92 (123)
T ss_pred EEEEECCCCC---CCcEeEEEEEEHHHcccC
Confidence 9998654332 346899999999998754
No 57
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=53.89 E-value=57 Score=29.30 Aligned_cols=92 Identities=10% Similarity=0.058 Sum_probs=50.3
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEec-CccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccc
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWK-GLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFP 92 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWK-GPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~P 92 (701)
.+.|.|.++.+|...... ......|.|.-. |.+ .....|..+.++ .-.-.| ||.|... ..+.-
T Consensus 16 ~L~v~vi~a~~L~~~~~~--g~~dpyV~v~l~~~~~-~~~~~kT~v~~~---------t~~P~w-ne~F~f~i~~~~~~~ 82 (136)
T cd08405 16 RITVNIIKARNLKAMDIN--GTSDPYVKVWLMYKDK-RVEKKKTVIKKR---------TLNPVF-NESFIFNIPLERLRE 82 (136)
T ss_pred eEEEEEEEeeCCCccccC--CCCCceEEEEEEeCCC-ccccccCcceeC---------CCCCcc-cceEEEeCCHHHhCC
Confidence 345556688888664321 122355565542 211 111112222221 123589 9998733 23334
Q ss_pred eeEEEEEEecCCcCcccceeEEEEEeeehhhh
Q 005345 93 WELHFTIFNGLNQGQRQKVTAMGTATLNLAKY 124 (701)
Q Consensus 93 WevaFtVf~g~nqg~K~K~~v~GtasLNLAEy 124 (701)
-.|.|+|+.-.+.+ ++ .+||.+++.+++.
T Consensus 83 ~~l~~~v~d~~~~~-~~--~~lG~~~i~~~~~ 111 (136)
T cd08405 83 TTLIITVMDKDRLS-RN--DLIGKIYLGWKSG 111 (136)
T ss_pred CEEEEEEEECCCCC-CC--cEeEEEEECCccC
Confidence 56889999754433 23 4899999999986
No 58
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=53.35 E-value=74 Score=29.28 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=55.0
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCcc-ccc-hhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccc
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLF-SFF-GLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFP 92 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk-~~l-~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~P 92 (701)
..|+|.++.+|..... ....-..|-|.- =|. ... ...|..++|+ | -.-.| ||.|... .-..=
T Consensus 16 L~V~V~~arnL~~~~~--~~~~dpyVKv~L-lp~~~~~~~~~kT~v~~~-t--------~nPvf-nE~F~f~v~~~~L~~ 82 (124)
T cd08680 16 LVISVEQLRNLSALSI--PENSKVYVRVAL-LPCSSSTSCLFRTKALED-Q--------DKPVF-NEVFRVPISSTKLYQ 82 (124)
T ss_pred EEEEEeEecCCccccc--CCCCCeEEEEEE-ccCCCCCCceEEcCccCC-C--------CCCcc-ccEEEEECCHHHhhc
Confidence 4555669988876532 122345666554 222 111 1123334442 2 13569 9999955 22334
Q ss_pred eeEEEEEEecCCcCcccceeEEEEEeeehhhhcccc
Q 005345 93 WELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSD 128 (701)
Q Consensus 93 WevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a 128 (701)
-.+.|+|++-. ...++. .||.+.+.|+++-+..
T Consensus 83 ~~L~~~V~~~~-~~~~~~--~lG~~~i~L~~~~~~~ 115 (124)
T cd08680 83 KTLQVDVCSVG-PDQQEE--CLGGAQISLADFESSE 115 (124)
T ss_pred CEEEEEEEeCC-CCCcee--EEEEEEEEhhhccCCC
Confidence 57889999753 333444 8999999999995554
No 59
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=53.18 E-value=59 Score=30.23 Aligned_cols=85 Identities=15% Similarity=0.209 Sum_probs=51.3
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCccccccc--ccccee
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSG--HVFPWE 94 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k~--~F~PWe 94 (701)
.+.|.|++..||.. . .....-..|+|++.|.+ .|..+.+ +...-.| +|.|.-.. .-..=.
T Consensus 29 ~L~V~V~~A~~L~~-d--~~g~~DPYVkV~~~~~~-----~kT~vi~---------~t~nPvW-NE~F~f~~~~~~~~~~ 90 (127)
T cd04032 29 TLTVTVLRATGLWG-D--YFTSTDGYVKVFFGGQE-----KRTEVIW---------NNNNPRW-NATFDFGSVELSPGGK 90 (127)
T ss_pred EEEEEEEECCCCCc-C--cCCCCCeEEEEEECCcc-----ccCceec---------CCCCCcC-CCEEEEecccCCCCCE
Confidence 67788889999963 1 11223578999986541 1222222 1224689 89898431 112345
Q ss_pred EEEEEEecCCcCcccceeEEEEEeeehh
Q 005345 95 LHFTIFNGLNQGQRQKVTAMGTATLNLA 122 (701)
Q Consensus 95 vaFtVf~g~nqg~K~K~~v~GtasLNLA 122 (701)
|.|.|+.--..+ +. -+||.+.++|+
T Consensus 91 L~v~V~D~d~~s-~d--d~IG~~~i~l~ 115 (127)
T cd04032 91 LRFEVWDRDNGW-DD--DLLGTCSVVPE 115 (127)
T ss_pred EEEEEEeCCCCC-CC--CeeEEEEEEec
Confidence 778888643322 33 48999999998
No 60
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=52.95 E-value=1.7e+02 Score=26.05 Aligned_cols=116 Identities=11% Similarity=0.096 Sum_probs=61.2
Q ss_pred EEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc--ccccceeEE
Q 005345 19 FTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS--GHVFPWELH 96 (701)
Q Consensus 19 ~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k--~~F~PWeva 96 (701)
.|.|.+..+|...... ...-..|.|+-.|-+. + |..+.++ |. .=.| ||.|.-. .... .+.
T Consensus 3 ~v~vi~a~~L~~~d~~--g~~DPYv~v~~~~~~~--~--kT~v~~~-t~--------nP~W-ne~f~~~~~~~~~--~l~ 64 (121)
T cd04054 3 YIRIVEGKNLPAKDIT--GSSDPYCIVKVDNEVI--I--RTATVWK-TL--------NPFW-GEEYTVHLPPGFH--TVS 64 (121)
T ss_pred EEEEEEeeCCcCCCCC--CCCCceEEEEECCEee--e--eeeeEcC-CC--------CCcc-cceEEEeeCCCCC--EEE
Confidence 4555577887665422 1223566666655221 1 2112221 11 2359 9999833 2222 577
Q ss_pred EEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEEE
Q 005345 97 FTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSFR 157 (701)
Q Consensus 97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSls 157 (701)
|.|+..... .+-.+||.+.+.+++..+.. ...+.=+||.-....-...-.|+|.++
T Consensus 65 v~v~d~~~~---~~d~~iG~~~~~~~~~~~~~--~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 65 FYVLDEDTL---SRDDVIGKVSLTREVISAHP--RGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEECCCC---CCCCEEEEEEEcHHHhccCC--CCCCcEEECeeeCCCCccccEEEEEEE
Confidence 888865443 34468999999999986532 134555566421222223345566554
No 61
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=52.55 E-value=30 Score=32.16 Aligned_cols=79 Identities=23% Similarity=0.342 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHhhCCCC---------CCChhhhhHHhhhchHHHHhhh--ccHHHHhhCCCC-CCChhhHhhhc---
Q 005345 418 SACTALVAVIANWLQCNPKE---------MPTKSEFDNLIREGSLDWRNLC--ENEEYIRRFPDK-HFDLETVLEAQ--- 482 (701)
Q Consensus 418 sACTaLvaviA~Wl~~N~~~---------mPt~sqfD~LIreGS~EWR~LC--ene~y~~~FPDK-HFDLETVl~A~--- 482 (701)
..|+.+=-+ -+||++|.-- =|++.++-.++..=...|+.|= ...+|++.--|+ +...+..+++=
T Consensus 9 p~C~t~rka-~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~~~~~~~~~~~~~~~i~~~ 87 (117)
T COG1393 9 PNCSTCRKA-LAWLEEHGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYRELNLDKEDLSDEELIEALLEN 87 (117)
T ss_pred CCChHHHHH-HHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHHHcCCcccccChHHHHHHHHhC
Confidence 457754444 4699988532 2777777666666555566663 234555555444 55555555552
Q ss_pred ----ccceeeecCCceeEe
Q 005345 483 ----ICPLFVVPENSFVGF 497 (701)
Q Consensus 483 ----iRPl~V~p~kSFvGF 497 (701)
=|||.|.+.+-.|||
T Consensus 88 ~~LikRPivv~~~~~~iG~ 106 (117)
T COG1393 88 PSLIKRPIVVDNKKLRVGF 106 (117)
T ss_pred hhhccCCeEEeCCceEecC
Confidence 289999999999998
No 62
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=52.34 E-value=87 Score=27.23 Aligned_cols=49 Identities=8% Similarity=0.193 Sum_probs=34.0
Q ss_pred eeeecCcccccc---ccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccc
Q 005345 76 VVQWNNQDFHYS---GHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSD 128 (701)
Q Consensus 76 ~VeW~~EEFe~k---~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a 128 (701)
.-.| ||.|... .....=.|.|.|++-.+.+ +-.+||.+.+.|++.....
T Consensus 62 ~P~w-ne~f~f~i~~~~l~~~~l~i~v~d~~~~~---~~~~iG~~~i~L~~l~~~~ 113 (123)
T cd08390 62 NPNF-DETFVFQVSFKELQRRTLRLSVYDVDRFS---RHCIIGHVLFPLKDLDLVK 113 (123)
T ss_pred CCcc-ceEEEEEcCHHHhcccEEEEEEEECCcCC---CCcEEEEEEEeccceecCC
Confidence 4589 9998833 2223345888999755433 2358999999999987755
No 63
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=50.04 E-value=59 Score=31.35 Aligned_cols=93 Identities=17% Similarity=0.143 Sum_probs=58.5
Q ss_pred CCceeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---c
Q 005345 12 ASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---G 88 (701)
Q Consensus 12 ~srKf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~ 88 (701)
..|+.+|++.++.-+|-.... .+.. -|....+-+-.+++-- .. ..-.| ++||+-. .
T Consensus 20 ~~rNi~v~v~~r~~d~~~~~~---------~i~~--~~~~~~~~s~~~sv~~--------~~-k~p~f-~deiKi~LP~~ 78 (178)
T cd08679 20 KGRNIEITVEVRDDDGDIIEP---------CISA--PGSGSELRSEYTSVVY--------YH-KNPVF-NDEIKIQLPAD 78 (178)
T ss_pred ccccEEEEEEEEcCCCCcccc---------cEEE--cCCCCccceeEEEEEE--------cC-CCCCC-ceeEEEecCCc
Confidence 479999999999988743321 1111 2222211111122221 11 24689 9999944 6
Q ss_pred cccceeEEEEEEecCCcCc--ccceeEEEEEeeehhhhc
Q 005345 89 HVFPWELHFTIFNGLNQGQ--RQKVTAMGTATLNLAKYA 125 (701)
Q Consensus 89 ~F~PWevaFtVf~g~nqg~--K~K~~v~GtasLNLAEyA 125 (701)
.+.-.||.|++++-.-+.. +.+...+|-|.|-|-+.-
T Consensus 79 l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~~~ 117 (178)
T cd08679 79 LTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMDKD 117 (178)
T ss_pred cCCCeEEEEEEEccccccccCCCccceEEEEEEeccccC
Confidence 7788999999998775553 445579999999998853
No 64
>PLN02352 phospholipase D epsilon
Probab=50.04 E-value=39 Score=40.54 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=57.8
Q ss_pred eecCcccc-ccccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCccCCceeeeEE
Q 005345 78 QWNNQDFH-YSGHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIEGDPYLCLSF 156 (701)
Q Consensus 78 eW~~EEFe-~k~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e~~psL~lSl 156 (701)
.| +|.|. +-+..--=+|.|+|=. ...+||+|.|-..+..+-. ..++--+||--.++..-..+.|||+|
T Consensus 59 ~w-~e~f~i~~ah~~~~~~~f~vk~--------~~~~ig~~~~p~~~~~~g~--~~~~~~~~~~~~~~~p~~~~~~~~~~ 127 (758)
T PLN02352 59 VW-NQTFQILCAHPLDSTITITLKT--------KCSILGRFHIQAHQIVTEA--SFINGFFPLIMENGKPNPELKLRFML 127 (758)
T ss_pred cc-ccceeEEeeeecCCcEEEEEec--------CCeEEEEEEEEHHHhhCCC--cccceEEEcccCCCCCCCCCEEEEEE
Confidence 49 99998 3332221368999944 4789999999999988853 23888899988888776669999999
Q ss_pred Eeeeeccc
Q 005345 157 RLIESRFA 164 (701)
Q Consensus 157 sl~Elr~~ 164 (701)
.|..+...
T Consensus 128 ~~~~~~~~ 135 (758)
T PLN02352 128 WFRPAELE 135 (758)
T ss_pred EEEEhhhC
Confidence 99766544
No 65
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=49.98 E-value=64 Score=29.58 Aligned_cols=95 Identities=15% Similarity=0.228 Sum_probs=54.9
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccce
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFPW 93 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~PW 93 (701)
.+.|.|.++.+|.... .......|-|.-.+-...+...+..+++ +.-.-.| ||.|... .-+.-=
T Consensus 16 ~L~V~V~~a~nL~~~~---~~~~d~yVkv~l~~~~~~~~~~kT~v~~---------~~~nP~f-nE~F~f~i~~~~l~~~ 82 (137)
T cd08409 16 RLTVVVLRARGLRQLD---HAHTSVYVKVSLMIHNKVVKTKKTEVVD---------GAASPSF-NESFSFKVTSRQLDTA 82 (137)
T ss_pred eEEEEEEEecCCCccc---CCCCCeEEEEEEEECCEEeeeeecccEe---------CCCCCcc-cceEEEECCHHHhCcc
Confidence 3566677988887653 2234566766654322212111222332 1224579 9999854 223334
Q ss_pred eEEEEEEecCCcCcccceeEEEEEeeehhhhccc
Q 005345 94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANS 127 (701)
Q Consensus 94 evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~ 127 (701)
.|.|+|.+-... .++. +||.++|....+++.
T Consensus 83 ~L~~~V~~~~~~-~~~~--~lG~v~ig~~~~~~~ 113 (137)
T cd08409 83 SLSLSVMQSGGV-RKSK--LLGRVVLGPFMYARG 113 (137)
T ss_pred EEEEEEEeCCCC-CCcc--eEEEEEECCcccCCC
Confidence 688999865543 2444 899999997777654
No 66
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=49.91 E-value=74 Score=28.60 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=54.0
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEecCcccc-chhhhhhhhhcccccCCCCCCceeeecCcccccc----cccc
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSF-FGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS----GHVF 91 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~-l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k----~~F~ 91 (701)
.+.|.|.++.+|.... ....-..|.|.- +|... ....+..+.+| | -.=.| ||.|... ....
T Consensus 14 ~L~V~Vi~A~~L~~~~---~~~~DpyVkv~l-~~~~~~~~~~kT~v~~~-~--------~nP~w-nE~F~f~~~~~~~l~ 79 (122)
T cd08381 14 TLFVMVMHAKNLPLLD---GSDPDPYVKTYL-LPDPQKTTKRKTKVVRK-T--------RNPTF-NEMLVYDGLPVEDLQ 79 (122)
T ss_pred EEEEEEEEeeCCCCCC---CCCCCCEEEEEE-eeCCccCCceeCCccCC-C--------CCCCc-ccEEEEecCChHHhC
Confidence 3566777999987764 122345677776 44311 11122333332 1 13479 8999843 1112
Q ss_pred ceeEEEEEEecCCcCcccceeEEEEEeeehhhhccc
Q 005345 92 PWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANS 127 (701)
Q Consensus 92 PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~ 127 (701)
==.|-|+|+.-.. ..++ -+||.+.++|+++...
T Consensus 80 ~~~L~~~V~d~d~-~~~~--~~lG~~~i~l~~l~~~ 112 (122)
T cd08381 80 QRVLQVSVWSHDS-LVEN--EFLGGVCIPLKKLDLS 112 (122)
T ss_pred CCEEEEEEEeCCC-CcCC--cEEEEEEEeccccccC
Confidence 2357788885432 2334 4899999999998754
No 67
>cd02425 Peptidase_C39F A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=49.06 E-value=26 Score=30.15 Aligned_cols=26 Identities=46% Similarity=0.749 Sum_probs=19.5
Q ss_pred EEEEecC-eeEEE-EEeceEEEEecccc
Q 005345 536 YIISWND-HFFVL-KIEQEAYYIIDTLG 561 (701)
Q Consensus 536 YIVSWND-HFFVL-Kve~dayYIIDTLG 561 (701)
.|+-|+| ||+|| +++.+.++|.|.-+
T Consensus 78 ~I~~~~~~~~~Vl~~~~~~~~~i~dp~~ 105 (126)
T cd02425 78 VIIFWNNNHFVVLEKIKKNKVTIVDPAI 105 (126)
T ss_pred EEEEEcCCcEEEEEEEECCEEEEEcCCC
Confidence 5566866 99988 67778888888744
No 68
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=48.77 E-value=70 Score=28.10 Aligned_cols=95 Identities=9% Similarity=0.058 Sum_probs=54.2
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccce
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFPW 93 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~PW 93 (701)
.++|.|.++.+|...... ......|.|.- +|.... ..|..++++ .-.-.| +|.|... ....-=
T Consensus 17 ~L~V~v~~a~~L~~~d~~--g~~dpyv~v~l-~~~~~~-~~kT~v~~~---------t~~P~w-ne~f~f~v~~~~l~~~ 82 (124)
T cd08387 17 ILNVKLIQARNLQPRDFS--GTADPYCKVRL-LPDRSN-TKQSKIHKK---------TLNPEF-DESFVFEVPPQELPKR 82 (124)
T ss_pred EEEEEEEEeeCCCCCCCC--CCCCCeEEEEE-ecCCCC-cEeCceEcC---------CCCCCc-ccEEEEeCCHHHhCCC
Confidence 466777788888765322 12235566666 454211 012223221 123569 9998843 222234
Q ss_pred eEEEEEEecCCcCcccceeEEEEEeeehhhhcccc
Q 005345 94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSD 128 (701)
Q Consensus 94 evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a 128 (701)
.|.|.|+.-- ...++ .+||.+.++|+++....
T Consensus 83 ~l~i~V~d~~-~~~~~--~~iG~~~i~l~~~~~~~ 114 (124)
T cd08387 83 TLEVLLYDFD-QFSRD--ECIGVVELPLAEVDLSE 114 (124)
T ss_pred EEEEEEEECC-CCCCC--ceeEEEEEecccccCCC
Confidence 5788888542 22233 58999999999987543
No 69
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=48.17 E-value=14 Score=34.84 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.6
Q ss_pred cCeeEEEEEeceEEEEecccc
Q 005345 541 NDHFFVLKIEQEAYYIIDTLG 561 (701)
Q Consensus 541 NDHFFVLKve~dayYIIDTLG 561 (701)
|+|-||||++...=|||.|--
T Consensus 73 ~~nTFvLK~~~~~eyI~Ea~d 93 (107)
T cd01231 73 NLYTFVLKVDDNTDIIFEVGD 93 (107)
T ss_pred cccEEEEEecCCceEEEEcCC
Confidence 889999999999999997743
No 70
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=47.80 E-value=1.9e+02 Score=25.32 Aligned_cols=109 Identities=8% Similarity=0.018 Sum_probs=60.5
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---cc--ccc
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GH--VFP 92 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~--F~P 92 (701)
+.|.|..+.+|..... .......|.|+--|... . +..+.+ .+...-.| ||.|.-. .. -.-
T Consensus 2 L~V~V~sA~~L~~~~~--~~~~dpYv~v~~~~~~~-~---~T~~~~--------~~~~~P~W-ne~f~f~v~~~~~~~~~ 66 (125)
T cd04051 2 LEITIISAEDLKNVNL--FGKMKVYAVVWIDPSHK-Q---STPVDR--------DGGTNPTW-NETLRFPLDERLLQQGR 66 (125)
T ss_pred EEEEEEEcccCCCCCc--ccCCceEEEEEECCCcc-c---cccccc--------CCCCCCCC-CCEEEEEcChHhcccCc
Confidence 4567779999877632 12335667777644111 0 111111 12235689 8988822 11 012
Q ss_pred eeEEEEEEecCCcCcccceeEEEEEeeehhhhccccccc--ceeeeeeeeecCC
Q 005345 93 WELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEK--ELQIKVPLTVSGD 144 (701)
Q Consensus 93 WevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~ek--e~ei~lPLsv~~g 144 (701)
=.|.|.|+...+-+ +-.+||.+.+.|+|+....... ...+-.||.-+.|
T Consensus 67 ~~l~~~v~d~~~~~---~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g 117 (125)
T cd04051 67 LALTIEVYCERPSL---GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG 117 (125)
T ss_pred cEEEEEEEECCCCC---CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC
Confidence 45888888653322 3358999999999998876431 1233345554443
No 71
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=47.53 E-value=1e+02 Score=27.00 Aligned_cols=103 Identities=13% Similarity=0.091 Sum_probs=54.4
Q ss_pred eEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc----cccc
Q 005345 16 YEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS----GHVF 91 (701)
Q Consensus 16 f~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k----~~F~ 91 (701)
..+.|.|.++.+|...... ......|.|.- .|...- ..+..|+-. .+.-.-.| +|.|... +...
T Consensus 15 ~~L~V~v~~a~~L~~~~~~--~~~dpyv~v~~-~~~~~~------~~~~rT~v~--~~~~~P~W-ne~f~f~~~~~~~~~ 82 (123)
T cd04035 15 SALHCTIIRAKGLKAMDAN--GLSDPYVKLNL-LPGASK------ATKLRTKTV--HKTRNPEF-NETLTYYGITEEDIQ 82 (123)
T ss_pred CEEEEEEEEeeCCCCCCCC--CCCCceEEEEE-ecCCCC------CCceeeeee--cCCCCCCc-cceEEEcCCCHHHhC
Confidence 3456666688888765321 12245555544 222110 011123311 12234689 8888732 1111
Q ss_pred ceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceee
Q 005345 92 PWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQI 135 (701)
Q Consensus 92 PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei 135 (701)
-=.+.|+|+.--+. + -.+||.+.+.|+++.... .+++.+
T Consensus 83 ~~~l~~~v~d~~~~--~--~~~iG~~~i~l~~l~~~~-~~~~~~ 121 (123)
T cd04035 83 RKTLRLLVLDEDRF--G--NDFLGETRIPLKKLKPNQ-TKQFNI 121 (123)
T ss_pred CCEEEEEEEEcCCc--C--CeeEEEEEEEcccCCCCc-ceEeec
Confidence 23577888865433 3 358999999999988554 334443
No 72
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=47.26 E-value=73 Score=28.59 Aligned_cols=91 Identities=12% Similarity=0.034 Sum_probs=52.5
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-ccccceeEE
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-GHVFPWELH 96 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~~F~PWeva 96 (701)
++|.|.++.||...... ...-..|.|+..|.+.. -|..+.+| | -.=.| ||.|.-. ..-.-=.|.
T Consensus 2 lrV~Vi~a~~L~~~d~~--g~~DPYv~v~~~~~~~~---~kT~~v~~-t--------~nP~W-ne~f~f~~~~~~~~~L~ 66 (124)
T cd04037 2 VRVYVVRARNLQPKDPN--GKSDPYLKIKLGKKKIN---DRDNYIPN-T--------LNPVF-GKMFELEATLPGNSILK 66 (124)
T ss_pred EEEEEEECcCCCCCCCC--CCCCcEEEEEECCeecc---ceeeEEEC-C--------CCCcc-ceEEEEEecCCCCCEEE
Confidence 57888899998776422 12345677776444311 11122221 1 23579 8999843 111112578
Q ss_pred EEEEecCCcCcccceeEEEEEeeehhhhcc
Q 005345 97 FTIFNGLNQGQRQKVTAMGTATLNLAKYAN 126 (701)
Q Consensus 97 FtVf~g~nqg~K~K~~v~GtasLNLAEyAS 126 (701)
|+|+.-.+. .++ .++|.+.++|++.--
T Consensus 67 ~~V~d~d~~-~~d--d~iG~~~i~l~~~~~ 93 (124)
T cd04037 67 ISVMDYDLL-GSD--DLIGETVIDLEDRFF 93 (124)
T ss_pred EEEEECCCC-CCC--ceeEEEEEeeccccc
Confidence 899864332 233 589999999998753
No 73
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=46.84 E-value=91 Score=28.92 Aligned_cols=93 Identities=11% Similarity=0.116 Sum_probs=51.0
Q ss_pred CCceeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCcc--ccchhhhhhhhhcccccCCCCCCceeeecCcccccc--
Q 005345 12 ASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLF--SFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-- 87 (701)
Q Consensus 12 ~srKf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk--~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-- 87 (701)
...++.|. |.++..|....... ..-..|=|.- .|. ..+...+.+++|+ .....| ||.|...
T Consensus 13 ~~~~L~V~--VikarnL~~~~~~~--~~dpyVkv~l-lp~~~~~~~~~kT~v~~~---------t~nPvf-nEtF~f~i~ 77 (138)
T cd08408 13 LTGRLSVE--VIKGSNFKNLAMNK--APDTYVKLTL-LNSDGQEISKSKTSIRRG---------QPDPEF-KETFVFQVA 77 (138)
T ss_pred CCCeEEEE--EEEecCCCccccCC--CCCeeEEEEE-EeCCCcceeeccceeecC---------CCCCcE-eeeEEEECC
Confidence 34455554 44888876653221 1234444444 332 2222223344442 224789 9999954
Q ss_pred -ccccceeEEEEEEecCCcCcccceeEEEEEeeehh
Q 005345 88 -GHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLA 122 (701)
Q Consensus 88 -~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLA 122 (701)
.-+.==.+.|+|++-.. ..+++ +||.++|.+.
T Consensus 78 ~~~l~~~~L~~~V~~~~~-~~~~~--~iG~v~l~~~ 110 (138)
T cd08408 78 LFQLSEVTLMFSVYNKRK-MKRKE--MIGWFSLGLN 110 (138)
T ss_pred HHHhCccEEEEEEEECCC-CCCCc--EEEEEEECCc
Confidence 22333468899997654 44555 8999888775
No 74
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=45.71 E-value=1.1e+02 Score=26.90 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=50.3
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccc-cce
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHV-FPW 93 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F-~PW 93 (701)
+.|.|.++.+|....... .....|.|+-.+++ .|..+.++- .-.=.| +|+|... ... .-=
T Consensus 3 L~V~V~~A~~L~~~~~~~--~~dpyv~v~~~~~~-----~~T~~~~~~--------t~nP~W-ne~f~f~v~~~~~~~~~ 66 (124)
T cd04049 3 LEVLLISAKGLQDTDFLG--KIDPYVIIQCRTQE-----RKSKVAKGD--------GRNPEW-NEKFKFTVEYPGWGGDT 66 (124)
T ss_pred EEEEEEecCCCCCCCCCC--CcCceEEEEECCEe-----eeeeEcCCC--------CCCCcc-cceEEEEecCcccCCCC
Confidence 456677888887653221 22334444433332 122232221 224689 8888833 110 113
Q ss_pred eEEEEEEecCCcCcccceeEEEEEeeehhhhcc
Q 005345 94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYAN 126 (701)
Q Consensus 94 evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS 126 (701)
.|.|.|+.-...+ + -.+||.+.++|+++..
T Consensus 67 ~l~v~V~d~~~~~-~--d~~iG~~~i~l~~l~~ 96 (124)
T cd04049 67 KLILRIMDKDNFS-D--DDFIGEATIHLKGLFE 96 (124)
T ss_pred EEEEEEEECccCC-C--CCeEEEEEEEhHHhhh
Confidence 6778888665433 2 3589999999999975
No 75
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=44.98 E-value=85 Score=27.34 Aligned_cols=91 Identities=12% Similarity=0.169 Sum_probs=51.8
Q ss_pred EEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccceeE
Q 005345 19 FTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFPWEL 95 (701)
Q Consensus 19 ~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~PWev 95 (701)
+|.|.++.+|+.... ........|.|+- |+. ..|..+.+| .-.=.||+|.|... ....-=.|
T Consensus 2 ~V~v~~a~~L~~~d~-~~~~~Dpyv~v~~-~~~----~~kT~v~~~---------~~nP~W~ne~f~f~i~~~~l~~~~l 66 (110)
T cd08688 2 KVRVVAARDLPVMDR-SSDLTDAFVEVKF-GST----TYKTDVVKK---------SLNPVWNSEWFRFEVDDEELQDEPL 66 (110)
T ss_pred EEEEEEEECCCcccc-CCCCCCceEEEEE-CCe----eEecceecC---------CCCCcccCcEEEEEcChHHcCCCeE
Confidence 566778888876531 0111235666665 331 112223221 12347966878733 22223468
Q ss_pred EEEEEecCCcCcccceeEEEEEeeehhhhccc
Q 005345 96 HFTIFNGLNQGQRQKVTAMGTATLNLAKYANS 127 (701)
Q Consensus 96 aFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~ 127 (701)
.|+|+.-... .++ .+||.+.+.|.+....
T Consensus 67 ~i~V~d~d~~-~~~--~~iG~~~~~l~~l~~~ 95 (110)
T cd08688 67 QIRVMDHDTY-SAN--DAIGKVYIDLNPLLLK 95 (110)
T ss_pred EEEEEeCCCC-CCC--CceEEEEEeHHHhccc
Confidence 8999965332 233 5899999999998874
No 76
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=44.79 E-value=86 Score=29.91 Aligned_cols=83 Identities=19% Similarity=0.116 Sum_probs=49.9
Q ss_pred eEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccc-cc-ccccce
Q 005345 16 YEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFH-YS-GHVFPW 93 (701)
Q Consensus 16 f~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe-~k-~~F~PW 93 (701)
+.|+|+ ++.+|..... --.+|+|+-.+.|+. |+.. .+ ..=+| ||+|. +. ..-.+
T Consensus 4 L~V~Vv--~Ar~L~~~~~-----~dPYV~Ik~g~~k~k------------T~v~--~~-~nP~W-nE~F~F~~~~~~~~- 59 (127)
T cd08394 4 LCVLVK--KAKLDGAPDK-----FNTYVTLKVQNVKST------------TIAV--RG-SQPCW-EQDFMFEINRLDLG- 59 (127)
T ss_pred EEEEEE--EeeCCCCCCC-----CCCeEEEEECCEEeE------------eeEC--CC-CCCce-eeEEEEEEcCCCCE-
Confidence 445544 8888855421 125899998553321 1111 11 13589 99999 33 43444
Q ss_pred eEEEEEEecCCcCcccceeEEEEEeeehhhhccc
Q 005345 94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANS 127 (701)
Q Consensus 94 evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~ 127 (701)
|.+.|.+-- . .+. -.||.++++|++....
T Consensus 60 -L~v~V~dkd-~-~~D--D~lG~v~i~L~~v~~~ 88 (127)
T cd08394 60 -LVIELWNKG-L-IWD--TLVGTVWIPLSTIRQS 88 (127)
T ss_pred -EEEEEEeCC-C-cCC--CceEEEEEEhHHcccC
Confidence 778888622 2 233 4899999999986655
No 77
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=44.58 E-value=1.5e+02 Score=25.86 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=55.7
Q ss_pred ceeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCccccccc----c
Q 005345 14 RNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSG----H 89 (701)
Q Consensus 14 rKf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k~----~ 89 (701)
.+..++|.|.++.+|...... ......|.|.. +|...- ..|..+++| | -.-.| ||.|.... .
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~--~~~dpyv~v~~-~~~~~~-~~kT~v~~~-t--------~~P~W-ne~f~f~~~~~~~ 79 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFS--GTSDPFVKIYL-LPDKKH-KLETKVKRK-N--------LNPHW-NETFLFEGFPYEK 79 (125)
T ss_pred CCCEEEEEEEEecCCCCccCC--CCCCceEEEEE-CCCCCc-ceeeeeecC-C--------CCCcc-ceeEEEcccCHHH
Confidence 344567777799998765321 23356677776 343110 122233331 1 23579 89997321 1
Q ss_pred ccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccc
Q 005345 90 VFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSD 128 (701)
Q Consensus 90 F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a 128 (701)
..==.|.|+|+.-...+ ++ .+||.+.+.|+++....
T Consensus 80 l~~~~l~~~v~d~d~~~-~~--~~iG~~~i~l~~l~~~~ 115 (125)
T cd08386 80 LQQRVLYLQVLDYDRFS-RN--DPIGEVSLPLNKVDLTE 115 (125)
T ss_pred hCCCEEEEEEEeCCCCc-CC--cEeeEEEEecccccCCC
Confidence 11124788888543322 33 58999999999988543
No 78
>PLN03008 Phospholipase D delta
Probab=42.78 E-value=74 Score=38.84 Aligned_cols=80 Identities=15% Similarity=0.245 Sum_probs=58.4
Q ss_pred eeecCcccccc-ccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCcc-CCceeee
Q 005345 77 VQWNNQDFHYS-GHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIE-GDPYLCL 154 (701)
Q Consensus 77 VeW~~EEFe~k-~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e-~~psL~l 154 (701)
=.| ||+|.-. ... -=.|.|+|+..-.-| + -+||.|++.|.++.+-. .++.-+||.-..+... ..+-|||
T Consensus 102 PvW-NE~F~f~vah~-~s~L~f~VkD~D~~g--a--D~IG~a~IPL~~L~~Ge---~vd~Wl~Ll~~~~kp~k~~~kl~v 172 (868)
T PLN03008 102 PLW-DEKFNISIAHP-FAYLEFQVKDDDVFG--A--QIIGTAKIPVRDIASGE---RISGWFPVLGASGKPPKAETAIFI 172 (868)
T ss_pred CCc-ceeEEEEecCC-CceEEEEEEcCCccC--C--ceeEEEEEEHHHcCCCC---ceEEEEEccccCCCCCCCCcEEEE
Confidence 479 9999944 211 228999999744333 2 58999999999988853 5778888888877554 4489999
Q ss_pred EEEeeeeccch
Q 005345 155 SFRLIESRFAQ 165 (701)
Q Consensus 155 Slsl~Elr~~q 165 (701)
+|.|..+...+
T Consensus 173 ~lqf~pv~~~~ 183 (868)
T PLN03008 173 DMKFTPFDQIH 183 (868)
T ss_pred EEEEEEccccc
Confidence 99997665543
No 79
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=42.54 E-value=99 Score=27.78 Aligned_cols=63 Identities=16% Similarity=0.334 Sum_probs=40.4
Q ss_pred eeeecCccccccccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccc--cceeeeeeeeecC
Q 005345 76 VVQWNNQDFHYSGHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKE--KELQIKVPLTVSG 143 (701)
Q Consensus 76 ~VeW~~EEFe~k~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~e--ke~ei~lPLsv~~ 143 (701)
.=.| +|.|.-. +...=.|.|.||..... .+-.++|.+.++|+++.....- .+....+||+-++
T Consensus 46 ~P~W-ne~f~~~-~~~~~~l~~~V~d~~~~---~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~ 110 (125)
T cd04021 46 NPKW-NEHFTVL-VTPQSTLEFKVWSHHTL---KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN 110 (125)
T ss_pred CCcc-ccEEEEE-eCCCCEEEEEEEeCCCC---CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC
Confidence 3589 8889832 11223688999975442 2336999999999998864322 2344567776554
No 80
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=42.30 E-value=66 Score=28.98 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHHHhhCC------CC---CCChhhhhHHhhhchHHHHhhhc--cHHHHhhCCC-CCCChhhHhhh---c
Q 005345 418 SACTALVAVIANWLQCNP------KE---MPTKSEFDNLIREGSLDWRNLCE--NEEYIRRFPD-KHFDLETVLEA---Q 482 (701)
Q Consensus 418 sACTaLvaviA~Wl~~N~------~~---mPt~sqfD~LIreGS~EWR~LCe--ne~y~~~FPD-KHFDLETVl~A---~ 482 (701)
+.|+.+-.++ .||++|. ++ =|++.|+..++..-...+..|=+ ..+|++.-.+ +-.+.+.+++. +
T Consensus 7 ~~C~t~rkA~-~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~~~~~ls~~e~i~ll~~~ 85 (112)
T cd03034 7 PRCSKSRNAL-ALLEEAGIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAPYKELGLADPELSDEELIDAMAAH 85 (112)
T ss_pred CCCHHHHHHH-HHHHHCCCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCCCccCCCHHHHHHHHHhC
Confidence 4576666655 7999875 22 36777665555444333333322 2344444333 34555655544 2
Q ss_pred ----ccceeeecCCceeEe
Q 005345 483 ----ICPLFVVPENSFVGF 497 (701)
Q Consensus 483 ----iRPl~V~p~kSFvGF 497 (701)
-|||.|..++-.+||
T Consensus 86 P~LikRPIi~~~~~~~vG~ 104 (112)
T cd03034 86 PILIERPIVVTGDGAVLGR 104 (112)
T ss_pred cCcccCCEEEECCEEEEcC
Confidence 299999999999998
No 81
>cd02419 Peptidase_C39C A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=42.24 E-value=34 Score=29.63 Aligned_cols=26 Identities=38% Similarity=0.692 Sum_probs=19.3
Q ss_pred CCcEEEEEecC-eeEEE-EEeceEEEEecc
Q 005345 532 DPSIYIISWND-HFFVL-KIEQEAYYIIDT 559 (701)
Q Consensus 532 ~p~iYIVSWND-HFFVL-Kve~dayYIIDT 559 (701)
-|.|. -|+| ||+|| +++.+.++|.|.
T Consensus 75 lP~i~--~~~~g~~~Vl~~~~~~~~~i~dp 102 (127)
T cd02419 75 LPCIL--HWDMNHFVVLKKVSRRRIVIHDP 102 (127)
T ss_pred CCEEE--EECCCEEEEEEEEcCCEEEEECC
Confidence 36544 4775 99887 778888888886
No 82
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=41.76 E-value=97 Score=29.20 Aligned_cols=91 Identities=10% Similarity=0.116 Sum_probs=52.7
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCcc-ccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccce
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLF-SFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFPW 93 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk-~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~PW 93 (701)
..|+|.++.+|.....+...+.-..|-|.- +|. ..++..+.+++|+ |. .-.| ||.|.+. ..+.-=
T Consensus 17 L~V~V~karnL~~~d~~~~~~~DpYVKv~l-~~~~~k~~kkkT~v~k~-t~--------nPvf-NE~f~F~v~~~~L~~~ 85 (138)
T cd08407 17 LLVVVIKAKNLHSDQLKLLLGIDVSVKVTL-KHQNAKLKKKQTKRAKH-KI--------NPVW-NEMIMFELPSELLAAS 85 (138)
T ss_pred EEEEEEEecCCCccccCCCCCCCeEEEEEE-EcCCcccceeccceeeC-CC--------CCcc-ccEEEEECCHHHhCcc
Confidence 556666999998764111122345565555 332 2233233444442 22 3579 9999965 233344
Q ss_pred eEEEEEEecCCcCcccceeEEEEEeeehh
Q 005345 94 ELHFTIFNGLNQGQRQKVTAMGTATLNLA 122 (701)
Q Consensus 94 evaFtVf~g~nqg~K~K~~v~GtasLNLA 122 (701)
-|.|+|+.-.- ..++. +||-++|.+.
T Consensus 86 ~L~~~V~d~d~-~~~~d--~iG~v~lg~~ 111 (138)
T cd08407 86 SVELEVLNQDS-PGQSL--PLGRCSLGLH 111 (138)
T ss_pred EEEEEEEeCCC-CcCcc--eeceEEecCc
Confidence 58899996633 34555 7999999984
No 83
>PRK06309 DNA polymerase III subunit epsilon; Validated
Probab=41.49 E-value=23 Score=35.33 Aligned_cols=53 Identities=23% Similarity=0.301 Sum_probs=37.6
Q ss_pred cCCceeEeecCCCCCC-------CCCccccccCCChhHHHHHHhhcCCCCCcEEEEEec-Cee
Q 005345 490 PENSFVGFFHPEGLEL-------GGNFNFLHDAMSFDSIWDEIIRCGSTDPSIYIISWN-DHF 544 (701)
Q Consensus 490 p~kSFvGFF~Peg~~~-------~~~fdfL~gAmSFD~IW~Ei~~~~~~~p~iYIVSWN-DHF 544 (701)
...+|.-++.|+..-+ +=+=+-+.++++|.+++.++...- ++.-++|.|| ++|
T Consensus 31 ~~~~f~~lv~P~~~I~~~a~~IhGIt~e~v~~~p~f~ev~~~~~~fi--~~~~~lVaHN~~~F 91 (232)
T PRK06309 31 TSESFQTLVNPEIPIPAEASKIHGITTDEVADAPKFPEAYQKFIEFC--GTDNILVAHNNDAF 91 (232)
T ss_pred cccEEEEEeCCCCCCChhHHhhcCCCHHHHhCCCCHHHHHHHHHHHH--cCCCEEEEeCCHHH
Confidence 3578999999965321 123457899999999999997632 2235899999 554
No 84
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=40.84 E-value=43 Score=30.00 Aligned_cols=73 Identities=22% Similarity=0.404 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHHhhCCCC---------CCChhh-----------hhHHhhhchHHHHhhhccHHHHhhCCCCCCChhh
Q 005345 418 SACTALVAVIANWLQCNPKE---------MPTKSE-----------FDNLIREGSLDWRNLCENEEYIRRFPDKHFDLET 477 (701)
Q Consensus 418 sACTaLvaviA~Wl~~N~~~---------mPt~sq-----------fD~LIreGS~EWR~LCene~y~~~FPDKHFDLET 477 (701)
..|..+..+. +||++|.-- .|++.+ ++.||+..|.-||.|=.++. -...+.+.
T Consensus 7 ~~C~~c~ka~-~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~------~~~~s~~e 79 (111)
T cd03036 7 PKCSTCRKAK-KWLDEHGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDK------LPSLSEEE 79 (111)
T ss_pred CCCHHHHHHH-HHHHHcCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccc------cccCCHHH
Confidence 3466666665 688776421 234433 56777777777877733311 12456566
Q ss_pred Hhhhc-------ccceeeecCCceeEe
Q 005345 478 VLEAQ-------ICPLFVVPENSFVGF 497 (701)
Q Consensus 478 Vl~A~-------iRPl~V~p~kSFvGF 497 (701)
++++= -|||.|..++-+|||
T Consensus 80 ~~~~l~~~p~LikRPIi~~~~~~~vGf 106 (111)
T cd03036 80 ALELLSSDGMLIKRPFVVDDDKVLVGF 106 (111)
T ss_pred HHHHHHhCcCeeeCCEEEeCCEEEEcc
Confidence 66552 299999999999995
No 85
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=40.57 E-value=2e+02 Score=25.97 Aligned_cols=98 Identities=13% Similarity=0.022 Sum_probs=53.0
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccc--cchhhhhhhhhcccccCCCCCCceeeecCcccccc-----ccc
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFS--FFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-----GHV 90 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~--~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-----~~F 90 (701)
+.|.|.++.+|...... ......|.|.--+... .....|..+.+| .-.=.| ||+|... ...
T Consensus 18 L~V~Vi~A~~L~~~~~~--g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~---------t~nP~w-nE~f~f~i~~~~~~~ 85 (133)
T cd04009 18 LRVEILNARNLLPLDSN--GSSDPFVKVELLPRHLFPDVPTPKTQVKKK---------TLFPLF-DESFEFNVPPEQCSV 85 (133)
T ss_pred EEEEEEEeeCCCCcCCC--CCCCCEEEEEEECCCcCccccccccccCcC---------CCCCcc-CCEEEEEechhhccc
Confidence 45555688888765321 1223455665433221 111112222221 112479 8999833 111
Q ss_pred cceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccc
Q 005345 91 FPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKE 130 (701)
Q Consensus 91 ~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~e 130 (701)
.-=.|.|+|+.-...+ +-.+||.+.+.|+|+....+-
T Consensus 86 ~~~~l~~~V~d~d~~~---~d~~iG~~~i~l~~l~~~~~~ 122 (133)
T cd04009 86 EGALLLFTVKDYDLLG---SNDFEGEAFLPLNDIPGVEDT 122 (133)
T ss_pred CCCEEEEEEEecCCCC---CCcEeEEEEEeHHHCCccccc
Confidence 2235778888543332 235899999999999876654
No 86
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=40.45 E-value=1.6e+02 Score=28.29 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=55.8
Q ss_pred ceeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccc----------hhhhhhhh--------hcccccCCCCCCc
Q 005345 14 RNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFF----------GLRRKILM--------INLTEEGDEVGDG 75 (701)
Q Consensus 14 rKf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l----------~slrrsvk--------rN~T~e~~~~~~~ 75 (701)
..+.++|.|.+..||...+.. ...-..|.|+. +|.... |-.+.++. ...|+.. .+.-
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~--g~~DPyv~v~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~--~~tl 100 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVN--GFSDPYCMLGI-VPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVK--PQTL 100 (153)
T ss_pred CeEEEEEEEEeccCCcccCCC--CCCCceEEEEE-cccccccccccccccccccccccccccccccccEeccee--cCCC
Confidence 468888999999998765421 12234566665 332111 00111111 1122211 1222
Q ss_pred eeeecCcccccc-ccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcc
Q 005345 76 VVQWNNQDFHYS-GHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYAN 126 (701)
Q Consensus 76 ~VeW~~EEFe~k-~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS 126 (701)
.=.| ||.|... .....=.|.|+|+.-. -.+||.+++.|++..+
T Consensus 101 nP~W-nE~F~f~v~~~~~~~L~i~V~D~d-------d~~IG~v~i~l~~l~~ 144 (153)
T cd08676 101 NPVW-NETFRFEVEDVSNDQLHLDIWDHD-------DDFLGCVNIPLKDLPS 144 (153)
T ss_pred CCcc-ccEEEEEeccCCCCEEEEEEEecC-------CCeEEEEEEEHHHhCC
Confidence 4589 8999844 2112235788888543 2499999999999984
No 87
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=40.32 E-value=3.7e+02 Score=26.39 Aligned_cols=110 Identities=11% Similarity=0.119 Sum_probs=65.5
Q ss_pred CCceeEEEEEEEeecCCCCCCCChhhhceEEEEEE-ecCccccchhhhhhhhhcccccCCCCCCceeeecCcccc----c
Q 005345 12 ASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIK-WKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFH----Y 86 (701)
Q Consensus 12 ~srKf~V~lvv~rleG~~~~~~~~~~~~~~vVEik-WKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe----~ 86 (701)
.-++|+|+++ .+.++++.. ....+.|++. +-|-+ .|.. .-.|....+. ..+.| +|-.. +
T Consensus 6 ~~~~f~i~i~--~~~~~~~~~----~~~~l~V~~~lyhG~~-~L~~------p~~T~~~~~~--~~~~W-newl~F~I~i 69 (173)
T cd08693 6 IEEKFSITLH--KISNLNAAE----RTMKVGVQAGLFHGGE-SLCK------TVKTSEVSGK--NDPVW-NETLEFDINV 69 (173)
T ss_pred cCCCEEEEEE--EeccCccCC----CCceEEEEEEEEECCE-EccC------ceEccccCCC--Ccccc-ceeEEcccch
Confidence 5678888777 888998721 2234566552 44544 1211 1133333332 23668 66544 3
Q ss_pred cccccceeEEEEEEecCCcC-------------cccceeEEEEEeeehhhhcccccccceeeee
Q 005345 87 SGHVFPWELHFTIFNGLNQG-------------QRQKVTAMGTATLNLAKYANSDKEKELQIKV 137 (701)
Q Consensus 87 k~~F~PWevaFtVf~g~nqg-------------~K~K~~v~GtasLNLAEyAS~a~eke~ei~l 137 (701)
+..-.==.|.|+|+.-.+.. .+.+...||.+.+.|=.|-.....-.+.+.|
T Consensus 70 ~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~Lr~G~~~L~l 133 (173)
T cd08693 70 CDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQLKTGDHTLYM 133 (173)
T ss_pred hcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcccchhhcCCeEEEe
Confidence 34434446889998644322 2334678999999999999988776666665
No 88
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=39.18 E-value=2.1e+02 Score=25.70 Aligned_cols=48 Identities=15% Similarity=0.310 Sum_probs=33.2
Q ss_pred eeeecCcccccc----ccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhccc
Q 005345 76 VVQWNNQDFHYS----GHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANS 127 (701)
Q Consensus 76 ~VeW~~EEFe~k----~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~ 127 (701)
.-.| ||.|... +-..==.+.|+|++-... .++ .++|.+.|+|+++...
T Consensus 62 nP~f-nE~F~f~~i~~~~l~~~~L~~~V~~~~~~-~~~--~~lG~~~i~L~~l~~~ 113 (124)
T cd08389 62 NPVF-NETFTFSRVEPEELNNMALRFRLYGVERM-RKE--RLIGEKVVPLSQLNLE 113 (124)
T ss_pred CCcc-cCEEEECCCCHHHhccCEEEEEEEECCCc-ccC--ceEEEEEEeccccCCC
Confidence 4679 9999843 233334578999965432 244 4899999999999553
No 89
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=39.14 E-value=48 Score=29.97 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=19.6
Q ss_pred CCChhhHhhhc-------ccceeeecCCceeEe
Q 005345 472 HFDLETVLEAQ-------ICPLFVVPENSFVGF 497 (701)
Q Consensus 472 HFDLETVl~A~-------iRPl~V~p~kSFvGF 497 (701)
..+.+++++.= -|||.|..++-+|||
T Consensus 73 ~ls~~e~i~~l~~~P~LikRPIi~~~~~~~vG~ 105 (114)
T TIGR00014 73 NLSDQELLDAMVAHPILLERPIVVAGDGARIGR 105 (114)
T ss_pred CCCHHHHHHHHHHCcCcccCCeEEECCEEEEcC
Confidence 55666665542 299999999999997
No 90
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=39.00 E-value=55 Score=29.40 Aligned_cols=46 Identities=20% Similarity=0.443 Sum_probs=29.4
Q ss_pred hHHhhhchHHHHhhhccHHHHhhCCCCCCChhhHhhh---c----ccceeeecCCceeEe
Q 005345 445 DNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEA---Q----ICPLFVVPENSFVGF 497 (701)
Q Consensus 445 D~LIreGS~EWR~LCene~y~~~FPDKHFDLETVl~A---~----iRPl~V~p~kSFvGF 497 (701)
+.||+..+..||.|=.++ . .-.+.+.++++ + =|||.|..++-+|||
T Consensus 51 ~~li~~~~~~yk~l~l~~--~-----~~~s~~e~~~~l~~~p~LikRPIi~~~~~~~iGf 103 (105)
T cd03035 51 ETLLNKRGTTWRKLDDAQ--K-----AALDAAKAIALMLEHPSLIKRPVLETGGKVLVGF 103 (105)
T ss_pred HHHHccCchHHHhCChhh--h-----ccCCHHHHHHHHHhCcCeeecceEEeCCEEEEee
Confidence 667777777777663221 0 12334554444 2 299999999999998
No 91
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=38.86 E-value=1.8e+02 Score=25.78 Aligned_cols=47 Identities=13% Similarity=0.314 Sum_probs=32.1
Q ss_pred eeeecCcccccc---ccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhccc
Q 005345 76 VVQWNNQDFHYS---GHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANS 127 (701)
Q Consensus 76 ~VeW~~EEFe~k---~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~ 127 (701)
.=.| ||.|... +. ..=.|.|+|+.-.+. .+-.++|.+.+.|++....
T Consensus 62 ~P~w-ne~f~~~~~~~~-~~~~l~v~v~d~~~~---~~~~~iG~~~~~l~~l~~~ 111 (131)
T cd04026 62 NPVW-NETFTFDLKPAD-KDRRLSIEVWDWDRT---TRNDFMGSLSFGVSELIKM 111 (131)
T ss_pred CCCc-cceEEEeCCchh-cCCEEEEEEEECCCC---CCcceeEEEEEeHHHhCcC
Confidence 3489 9999844 11 123577888864432 2446999999999999753
No 92
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=38.83 E-value=69 Score=30.03 Aligned_cols=70 Identities=19% Similarity=0.364 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHhhCCC---------CCCChhh-----------hhHHhhhchHHHHhhhccHHHHhhCCCCCCChhhH
Q 005345 419 ACTALVAVIANWLQCNPK---------EMPTKSE-----------FDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETV 478 (701)
Q Consensus 419 ACTaLvaviA~Wl~~N~~---------~mPt~sq-----------fD~LIreGS~EWR~LCene~y~~~FPDKHFDLETV 478 (701)
-|..+-.+. .||++|.- -.|++.+ ++.||+..+.-||+|=.+. +....+.+
T Consensus 9 ~C~~crkA~-~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~~~lin~~~~~~k~L~~~~--------~~ls~~e~ 79 (132)
T PRK13344 9 SCTSCKKAK-TWLNAHQLSYKEQNLGKEPLTKEEILAILTKTENGIESIVSSKNRYAKALDCDI--------EELSVNEV 79 (132)
T ss_pred CCHHHHHHH-HHHHHcCCCeEEEECCCCCCCHHHHHHHHHHhCCCHHHhhccCcHHHHhCCcch--------hcCCHHHH
Confidence 354444433 68888762 1355543 5777777788888764321 12333444
Q ss_pred hhh---c----ccceeeecCCceeEe
Q 005345 479 LEA---Q----ICPLFVVPENSFVGF 497 (701)
Q Consensus 479 l~A---~----iRPl~V~p~kSFvGF 497 (701)
+++ + =|||.|..++-+|||
T Consensus 80 i~ll~~~P~LikRPIv~~~~~~~iG~ 105 (132)
T PRK13344 80 IDLIQENPRILKSPILIDDKRLQVGY 105 (132)
T ss_pred HHHHHhCccceeCcEEEeCCEEEeCC
Confidence 433 2 299999999999995
No 93
>PRK12559 transcriptional regulator Spx; Provisional
Probab=38.31 E-value=46 Score=31.11 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=29.5
Q ss_pred hhHHhhhchHHHHhhhccHHHHhhCCCCCCChhhHhhhc-------ccceeeecCCceeEe
Q 005345 444 FDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQ-------ICPLFVVPENSFVGF 497 (701)
Q Consensus 444 fD~LIreGS~EWR~LCene~y~~~FPDKHFDLETVl~A~-------iRPl~V~p~kSFvGF 497 (701)
++.||+..|..||.|=.+. +..+.+.++++= =|||.+..++-+|||
T Consensus 53 ~~~lin~~~~~~k~l~~~~--------~~ls~~e~i~ll~~~P~LikRPIi~~~~~~~iGf 105 (131)
T PRK12559 53 ATEIISTRSKTFQDLNINI--------EELSLNEFYKLIIEHPLMLRRPIMLDEKRLQIGF 105 (131)
T ss_pred HHHHHhcCcHHHHhCCCCc--------ccCCHHHHHHHHHhCcceEeCCEEEeCCEEEEcC
Confidence 4566666777777763322 223445555442 299999999999996
No 94
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that ser
Probab=38.08 E-value=24 Score=31.60 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=32.3
Q ss_pred ceeEeecCCCC-CC------CCCccccccCCChhHHHHHHhhcCCCCCcEEEEEec
Q 005345 493 SFVGFFHPEGL-EL------GGNFNFLHDAMSFDSIWDEIIRCGSTDPSIYIISWN 541 (701)
Q Consensus 493 SFvGFF~Peg~-~~------~~~fdfL~gAmSFD~IW~Ei~~~~~~~p~iYIVSWN 541 (701)
+|--++.|+.. .+ |=+-+.|.++++|.++|.++...-.. -++|.||
T Consensus 32 ~~~~~i~p~~~~~~~~~~i~GIt~e~l~~~~~~~~v~~~l~~~l~~---~~lv~hn 84 (156)
T cd06130 32 TFYTLIRPPTRFDPFNIAIHGITPEDVADAPTFPEVWPEIKPFLGG---SLVVAHN 84 (156)
T ss_pred EEEEEeCcCCCCChhhccccCcCHHHHhcCCCHHHHHHHHHHHhCC---CEEEEeC
Confidence 56678888752 11 12345678899999999999874432 3789999
No 95
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=37.12 E-value=1.1e+02 Score=28.30 Aligned_cols=91 Identities=10% Similarity=0.086 Sum_probs=54.6
Q ss_pred EEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc--cc-------
Q 005345 19 FTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS--GH------- 89 (701)
Q Consensus 19 ~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k--~~------- 89 (701)
+|.|.++.+|... . .......|.|++.+|... ...|..+.+| | -.=.| +|.|... ..
T Consensus 2 ~V~Vi~A~~L~~~-~--~g~~dPyv~v~~~~~~~~-~~~rT~vv~~-t--------~nP~W-ne~f~f~~~~~~~~~~~~ 67 (137)
T cd08675 2 SVRVLECRDLALK-S--NGTCDPFARVTLNYSSKT-DTKRTKVKKK-T--------NNPRF-DEAFYFELTIGFSYEKKS 67 (137)
T ss_pred EEEEEEccCCCcc-c--CCCCCcEEEEEEecCCcC-CeeccceeeC-C--------CCCCc-ceEEEEEccccccccccc
Confidence 3556688887654 1 123467889999766211 0012222222 1 13479 8888844 22
Q ss_pred -------ccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcc
Q 005345 90 -------VFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYAN 126 (701)
Q Consensus 90 -------F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS 126 (701)
..+=.|.|.|++.... .+-.+||.+.+.|.++..
T Consensus 68 ~~~~~~~~~~~~l~i~V~d~~~~---~~~~~IG~~~i~l~~l~~ 108 (137)
T cd08675 68 FKVEEEDLEKSELRVELWHASMV---SGDDFLGEVRIPLQGLQQ 108 (137)
T ss_pred cccccccccccEEEEEEEcCCcC---cCCcEEEEEEEehhhccC
Confidence 1456788898866544 234689999999999874
No 96
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=36.25 E-value=1.4e+02 Score=26.87 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=48.5
Q ss_pred EEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---ccccce
Q 005345 17 EAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFPW 93 (701)
Q Consensus 17 ~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~PW 93 (701)
.++|.|.++.+|...... ......|.|.-.+.... +.+..|+-. .+.-.=.| ||+|... .....=
T Consensus 16 ~l~V~Vi~a~~L~~~d~~--g~~dpyv~v~l~~~~~~-------~~~~kT~v~--~~t~nP~w-ne~f~f~i~~~~l~~~ 83 (136)
T cd08402 16 KLTVVILEAKNLKKMDVG--GLSDPYVKIHLMQNGKR-------LKKKKTTIK--KRTLNPYY-NESFSFEVPFEQIQKV 83 (136)
T ss_pred eEEEEEEEeeCCCcccCC--CCCCCeEEEEEEECCcc-------cceeeccce--eCCCCCcc-cceEEEECCHHHhCCC
Confidence 466666788888765321 12234566655221111 111123211 11123479 8988733 222233
Q ss_pred eEEEEEEecCCcCcccceeEEEEEeeehhh
Q 005345 94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAK 123 (701)
Q Consensus 94 evaFtVf~g~nqg~K~K~~v~GtasLNLAE 123 (701)
.|.|+|+.-...+ ++ -+||.+.|.|..
T Consensus 84 ~l~~~v~d~~~~~-~~--~~iG~~~i~~~~ 110 (136)
T cd08402 84 HLIVTVLDYDRIG-KN--DPIGKVVLGCNA 110 (136)
T ss_pred EEEEEEEeCCCCC-CC--ceeEEEEECCcc
Confidence 5788998654433 23 489999999853
No 97
>PF13162 DUF3997: Protein of unknown function (DUF3997)
Probab=35.93 E-value=43 Score=31.73 Aligned_cols=35 Identities=26% Similarity=0.608 Sum_probs=26.9
Q ss_pred CCCcEEEEEecCeeEEEEEec------------------eEEEEecccchhhh
Q 005345 531 TDPSIYIISWNDHFFVLKIEQ------------------EAYYIIDTLGERLY 565 (701)
Q Consensus 531 ~~p~iYIVSWNDHFFVLKve~------------------dayYIIDTLGERL~ 565 (701)
..+.||=|.|||-|.+.|.-. +-|||||+-.+..|
T Consensus 34 I~a~V~~i~~dd~yIiaKq~p~~~~d~~~~~~~~~~~~~e~Y~IId~~~~~v~ 86 (115)
T PF13162_consen 34 IPAKVVEIGYDDDYIIAKQKPEIKSDPNNPKSYIYNKSSEEYWIIDKKNDEVY 86 (115)
T ss_pred cCcEEEEEecCCeeEEEEccccccCCCCCccceeccCCCceEEEEEcCCCcEE
Confidence 567899999999999999652 13999998755443
No 98
>cd02418 Peptidase_C39B A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=35.78 E-value=53 Score=28.59 Aligned_cols=29 Identities=31% Similarity=0.543 Sum_probs=20.0
Q ss_pred CCCcEEEEE--ecC-eeEEE-EEeceEEEEecc
Q 005345 531 TDPSIYIIS--WND-HFFVL-KIEQEAYYIIDT 559 (701)
Q Consensus 531 ~~p~iYIVS--WND-HFFVL-Kve~dayYIIDT 559 (701)
.-|.|-.|. |+| ||+|| +++.+.++|.|.
T Consensus 76 ~~P~I~~~~~~~~~~~~~Vl~~~~~~~~~i~dp 108 (136)
T cd02418 76 PLPFIAHVIKEWKLNHYVVVYKIKKKKILIADP 108 (136)
T ss_pred CCCEEEEEccCCCCCeEEEEEEEcCCEEEEECC
Confidence 346555543 664 88877 677778888886
No 99
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=35.32 E-value=90 Score=26.59 Aligned_cols=42 Identities=29% Similarity=0.515 Sum_probs=28.0
Q ss_pred CCChhHHHHHHhhcCCCCCcEEEEE--------------ecCeeEEEEE-eceE-EEEecc
Q 005345 515 AMSFDSIWDEIIRCGSTDPSIYIIS--------------WNDHFFVLKI-EQEA-YYIIDT 559 (701)
Q Consensus 515 AmSFD~IW~Ei~~~~~~~p~iYIVS--------------WNDHFFVLKv-e~da-yYIIDT 559 (701)
..++++|.++|. .+.|.|.-|. .+.||.||.= +.+. +||.|.
T Consensus 86 ~~~~~~i~~~i~---~G~Pvi~~~~~~~~~~~~~~~~~~~~~H~vvi~Gy~~~~~~~v~DP 143 (144)
T PF13529_consen 86 DASFDDIKQEID---AGRPVIVSVNSGWRPPNGDGYDGTYGGHYVVIIGYDEDGYVYVNDP 143 (144)
T ss_dssp TS-HHHHHHHHH---TT--EEEEEETTSS--TTEEEEE-TTEEEEEEEEE-SSE-EEEE-T
T ss_pred CCcHHHHHHHHH---CCCcEEEEEEcccccCCCCCcCCCcCCEEEEEEEEeCCCEEEEeCC
Confidence 567899999998 6778777775 4789998863 4455 777774
No 100
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=33.98 E-value=1.6e+02 Score=27.95 Aligned_cols=93 Identities=10% Similarity=0.058 Sum_probs=53.4
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc-c-c------
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS-G-H------ 89 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k-~-~------ 89 (701)
+.|.|.++.+|... . .....+|.|..-|++......|..++++ |. .=.| ||.|... . .
T Consensus 2 L~V~Vi~ArnL~~~--~--g~sDPYV~V~l~~~~~k~~~~kT~v~~~-t~--------nP~w-NE~F~F~v~~~~~~~~~ 67 (148)
T cd04010 2 LSVRVIECSDLALK--N--GTCDPYASVTLIYSNKKQDTKRTKVKKK-TN--------NPQF-DEAFYFDVTIDSSPEKK 67 (148)
T ss_pred EEEEEEeCcCCCCC--C--CCCCceEEEEEeCCcccCcccCCccEeC-CC--------CCcc-ceEEEEEEecccccccc
Confidence 45556688888762 1 1235788899877653222223233321 11 2479 8999843 1 0
Q ss_pred --------ccceeEEEEEEecCCcCcccceeEEEEEeeehhhhccc
Q 005345 90 --------VFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANS 127 (701)
Q Consensus 90 --------F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~ 127 (701)
..-=.|.|.|++-... .+ -.+||.+.|.|.+....
T Consensus 68 ~~~~~~~~~~~~~L~i~V~d~~~~-~~--ddfLG~v~i~l~~l~~~ 110 (148)
T cd04010 68 QFEMPEEDAEKLELRVDLWHASMG-GG--DVFLGEVRIPLRGLDLQ 110 (148)
T ss_pred cccCCcccccEEEEEEEEEcCCCC-CC--CceeEEEEEeccccccc
Confidence 0113466777654332 23 35899999999987765
No 101
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair]
Probab=32.62 E-value=16 Score=41.15 Aligned_cols=22 Identities=36% Similarity=0.798 Sum_probs=17.7
Q ss_pred ccccccccccccccccCcccCCccccccccccCCCcccccccc
Q 005345 306 KRGILPWSTRKLRFRSRKTKEEPLLKKDYREEGGDDIDFVRRQ 348 (701)
Q Consensus 306 kr~il~WrkrkLsFrspk~KgEPLLKK~~gEeGGDDid~drr~ 348 (701)
-.|+||||+|+ ..|+-|++||.
T Consensus 104 ~KRdLPWR~r~---------------------sEde~DwerRa 125 (555)
T KOG2457|consen 104 NKRDLPWRNRR---------------------SEDEKDWERRA 125 (555)
T ss_pred hcccCccccCC---------------------ccchhhHHHHH
Confidence 45799999995 36789999986
No 102
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=31.79 E-value=44 Score=38.07 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=30.4
Q ss_pred CcEEEEEecCeeEE-EEEeceEEEEecc-cchh------hhhccCceEEEEecCCc
Q 005345 533 PSIYIISWNDHFFV-LKIEQEAYYIIDT-LGER------LYEGCNQAYILKFDKDA 580 (701)
Q Consensus 533 p~iYIVSWNDHFFV-LKve~dayYIIDT-LGER------L~EGC~qAYiLkFD~~t 580 (701)
|. |+-|++||+| .|++.+.+||.|. .|.+ =|+-.=.+|+|-|..+.
T Consensus 64 P~--i~~~~~~~vvl~~~~~~~~~i~Dp~~g~~~~i~~~e~~~~~~g~~l~~~~~~ 117 (694)
T TIGR01846 64 PA--LIDGEGGWFVLGKLTANGVTIYDPPGDAPEVLSREVLEALWSGTVILLATRS 117 (694)
T ss_pred CE--EEEECCcEEEEEEEcCCEEEEEcCCCCCceeeCHHHHHhhCCCeEEEEecCc
Confidence 55 5678888775 4678899999995 6622 12223246788887653
No 103
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=31.73 E-value=1.9e+02 Score=26.05 Aligned_cols=91 Identities=9% Similarity=0.054 Sum_probs=48.0
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---cccccee
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFPWE 94 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~PWe 94 (701)
+.|.|.++.+|....... ..-..|.|.-.+-+..+...+..|++| | -.-.| +|.|... ....-=.
T Consensus 17 L~V~vi~a~~L~~~d~~g--~~Dpyv~v~l~~~~~~~~~~kT~v~k~-t--------~nP~w-~e~F~f~v~~~~~~~~~ 84 (136)
T cd08404 17 LTVVVLKARHLPKMDVSG--LADPYVKVNLYYGKKRISKKKTHVKKC-T--------LNPVF-NESFVFDIPSEELEDIS 84 (136)
T ss_pred EEEEEEEeeCCCccccCC--CCCeEEEEEEEcCCceeeeEcCccccC-C--------CCCcc-CceEEEECCHHHhCCCE
Confidence 444556888876653221 223455555432222221122233332 1 13569 8988722 2333345
Q ss_pred EEEEEEecCCcCcccceeEEEEEeeehhh
Q 005345 95 LHFTIFNGLNQGQRQKVTAMGTATLNLAK 123 (701)
Q Consensus 95 vaFtVf~g~nqg~K~K~~v~GtasLNLAE 123 (701)
+.|+|+.--..+ ++ .+||.+.|++..
T Consensus 85 l~~~v~d~d~~~-~~--~~iG~~~~~~~~ 110 (136)
T cd08404 85 VEFLVLDSDRVT-KN--EVIGRLVLGPKA 110 (136)
T ss_pred EEEEEEECCCCC-CC--ccEEEEEECCcC
Confidence 778888644332 33 589999999987
No 104
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=31.69 E-value=1.6e+02 Score=25.75 Aligned_cols=94 Identities=7% Similarity=0.066 Sum_probs=52.9
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCccccccccc----cce
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYSGHV----FPW 93 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k~~F----~PW 93 (701)
++|.|.++.+|...... ....-..|.|.-.+..... .+..+.++ | -.=.| ||.|...... .==
T Consensus 3 L~V~v~~a~~L~~~d~~-~~~~Dpyv~v~~~~~~~~~--~kT~v~~~-t--------~nP~W-ne~f~f~~~~~~~~~~~ 69 (111)
T cd04041 3 LVVTIHRATDLPKADFG-TGSSDPYVTASFAKFGKPL--YSTRIIRK-D--------LNPVW-EETWFVLVTPDEVKAGE 69 (111)
T ss_pred EEEEEEEeeCCCcccCC-CCCCCccEEEEEccCCCcc--EeeeeECC-C--------CCCcc-ceeEEEEeCchhccCCC
Confidence 56778899998765321 0123456777664432110 12222221 1 13479 8999743111 113
Q ss_pred eEEEEEEecCCcCcccceeEEEEEeeehhhhccc
Q 005345 94 ELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANS 127 (701)
Q Consensus 94 evaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~ 127 (701)
.|.|+|+.-...+ ++ -+||.+++.|+++...
T Consensus 70 ~l~~~V~d~d~~~-~d--d~lG~~~i~l~~l~~~ 100 (111)
T cd04041 70 RLSCRLWDSDRFT-AD--DRLGRVEIDLKELIED 100 (111)
T ss_pred EEEEEEEeCCCCC-CC--CcceEEEEEHHHHhcC
Confidence 5888998654332 33 4899999999999843
No 105
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=30.83 E-value=90 Score=28.02 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHHhhCCC---------CCCChhhhhHHhhhchHHHHhhhc--cHHHHhhCCCC---CCChhhHhhh--
Q 005345 418 SACTALVAVIANWLQCNPK---------EMPTKSEFDNLIREGSLDWRNLCE--NEEYIRRFPDK---HFDLETVLEA-- 481 (701)
Q Consensus 418 sACTaLvaviA~Wl~~N~~---------~mPt~sqfD~LIreGS~EWR~LCe--ne~y~~~FPDK---HFDLETVl~A-- 481 (701)
..|.-+..++ .||.+|.- -.|++.|+..++..-...|..|.. ..+|++.-..+ -.+.+.+++.
T Consensus 7 ~~C~~c~ka~-~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l~~~~~~~~ls~~e~~~~i~ 85 (117)
T TIGR01617 7 PNCTTCKKAR-RWLEANGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRALNTSNTFLDLSDKEALELLA 85 (117)
T ss_pred CCCHHHHHHH-HHHHHcCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhCCchhhcccCCHHHHHHHHH
Confidence 4566666665 78887641 236666665555444433433332 23344433321 3444544443
Q ss_pred -c----ccceeeecC-CceeEe
Q 005345 482 -Q----ICPLFVVPE-NSFVGF 497 (701)
Q Consensus 482 -~----iRPl~V~p~-kSFvGF 497 (701)
+ =|||.|..+ +-+|||
T Consensus 86 ~~p~LikRPIi~~~~~~~~vG~ 107 (117)
T TIGR01617 86 EDPALLRRPLIVDTKNRLLIGF 107 (117)
T ss_pred hCcceEecCEEEeCCceEEecC
Confidence 2 299999988 668995
No 106
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=30.67 E-value=1.4e+02 Score=25.99 Aligned_cols=71 Identities=27% Similarity=0.455 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHhhCCC---------CCCChhh-----------hhHHhhhchHHHHhhhccHHHHhhCCCCCCChhhH
Q 005345 419 ACTALVAVIANWLQCNPK---------EMPTKSE-----------FDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETV 478 (701)
Q Consensus 419 ACTaLvaviA~Wl~~N~~---------~mPt~sq-----------fD~LIreGS~EWR~LCene~y~~~FPDKHFDLETV 478 (701)
.|.-+--+. .||+++.- -.|++.+ ++.||+..+.-||+|=.+. .+.++.+.+
T Consensus 8 ~C~~c~ka~-~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~-------~~~ls~~e~ 79 (105)
T cd02977 8 NCSTSRKAL-AWLEEHGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLAD-------KDELSDEEA 79 (105)
T ss_pred CCHHHHHHH-HHHHHcCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCcc-------ccCCCHHHH
Confidence 355554444 68877641 1344444 4556666556666552221 145677777
Q ss_pred hhhc-------ccceeeecCCceeEe
Q 005345 479 LEAQ-------ICPLFVVPENSFVGF 497 (701)
Q Consensus 479 l~A~-------iRPl~V~p~kSFvGF 497 (701)
++.= -|||.|..++-+|||
T Consensus 80 ~~~l~~~p~LikRPii~~~~~~~iG~ 105 (105)
T cd02977 80 LELMAEHPKLIKRPIVVDGDRLLVGF 105 (105)
T ss_pred HHHHHhCcCeeeCCEEEECCEEEecC
Confidence 6652 399999999999997
No 107
>cd02421 Peptidase_C39_likeD A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this sub-family.
Probab=30.52 E-value=59 Score=28.12 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=18.3
Q ss_pred EEEEecC-eeEEE-EEeceEEEEeccc
Q 005345 536 YIISWND-HFFVL-KIEQEAYYIIDTL 560 (701)
Q Consensus 536 YIVSWND-HFFVL-Kve~dayYIIDTL 560 (701)
.|+-|+| ||+|| ++..+.+.|.|.-
T Consensus 72 ~i~~~~~g~~~Vl~~~~~~~~~i~dp~ 98 (124)
T cd02421 72 AILLLKNGRACVLLGVDDGHARILDPE 98 (124)
T ss_pred EEEEEcCCCEEEEEEecCCeEEEEccC
Confidence 4556988 88775 7777788888764
No 108
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=30.45 E-value=43 Score=38.05 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=30.4
Q ss_pred EEEEecC-eeEEE-EEeceE-EEEeccc-c--hh-----hhhccCceEEEEecCCcc
Q 005345 536 YIISWND-HFFVL-KIEQEA-YYIIDTL-G--ER-----LYEGCNQAYILKFDKDAT 581 (701)
Q Consensus 536 YIVSWND-HFFVL-Kve~da-yYIIDTL-G--ER-----L~EGC~qAYiLkFD~~t~ 581 (701)
.|+=||+ ||.|| |+..+. +||.|-- | +| =++.+-..|+|.+.....
T Consensus 65 ~i~~~~~~h~vvl~~~~~~~~~~i~DP~~g~~~~~~~~~e~~~~~~g~~l~~~~~~~ 121 (694)
T TIGR03375 65 AILLLKDGRACVLLGIDEDGKARVLLPETGDGEQELSLDALEALYSGYAIFVRPQFR 121 (694)
T ss_pred EEEEEcCCcEEEEEEEcCCCcEEEEccCCCCCceEecHHHHHhhcCCeEEEEecccc
Confidence 4577965 99776 788887 9999974 5 22 123333468888876544
No 109
>cd02423 Peptidase_C39G A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=29.37 E-value=83 Score=27.15 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=22.0
Q ss_pred CCCcEEEEEe--cCeeEEEE-EeceEEEEeccc
Q 005345 531 TDPSIYIISW--NDHFFVLK-IEQEAYYIIDTL 560 (701)
Q Consensus 531 ~~p~iYIVSW--NDHFFVLK-ve~dayYIIDTL 560 (701)
.-|.|.++.+ +.||.||+ ...+.++|.|..
T Consensus 75 ~lP~i~~~~~~~~~~~vvl~~~~~~~~~i~dp~ 107 (129)
T cd02423 75 QIPVIVLVNNGGYGHFVVIKGIDGDRVLVGDPA 107 (129)
T ss_pred CCCEEEEEecCCCceEEEEEEEeCCEEEEECCC
Confidence 4587777632 33999999 888888888873
No 110
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=28.54 E-value=1.1e+02 Score=31.28 Aligned_cols=105 Identities=14% Similarity=0.110 Sum_probs=62.1
Q ss_pred CCceeEEEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---c
Q 005345 12 ASRNYEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---G 88 (701)
Q Consensus 12 ~srKf~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~ 88 (701)
.+|+.+|+|.|+..+|=.+. -+=.+|-...+-+-.|++.-...+ .=.| +|+++=. .
T Consensus 21 ~~rNIeVtv~vr~~~G~~i~------------~~i~~gsg~~~~se~~S~V~Yh~~--------~P~W-~EtIKl~lP~~ 79 (196)
T cd08694 21 SDKNVEVTVSVCNEDGKIIP------------GVISLGAGEEPIDEYKSVIYYQVD--------KPKW-FETFKVAIPIE 79 (196)
T ss_pred CcceEEEEEEEECCCCCCCc------------eeEEcCCCCCcceeEEEEEEeecC--------CCCC-ceeEEEecChh
Confidence 46999999999998884322 122334332222222333210111 2369 9999833 7
Q ss_pred cccceeEEEEEEecCCcCcccce-eEEEEEeeehhhhc-ccccccceeeee
Q 005345 89 HVFPWELHFTIFNGLNQGQRQKV-TAMGTATLNLAKYA-NSDKEKELQIKV 137 (701)
Q Consensus 89 ~F~PWevaFtVf~g~nqg~K~K~-~v~GtasLNLAEyA-S~a~eke~ei~l 137 (701)
.|.=.||.|++++-+-+..|.|. ..+|-+.|-|=.-- .......+++.|
T Consensus 80 ~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~~~gt~l~dG~H~L~v 130 (196)
T cd08694 80 DFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQENGTTLTDGEHDLIV 130 (196)
T ss_pred hCCCeEEEEEEEeeccccccCCCCCceEEEEEeeeccCCcEEccCCEEEEE
Confidence 88999999999987766555542 46888888886321 123334555533
No 111
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=28.17 E-value=2.5e+02 Score=25.19 Aligned_cols=90 Identities=8% Similarity=0.019 Sum_probs=46.7
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---cccccee
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFPWE 94 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~PWe 94 (701)
++|.|.++.+|...... ......|.|.-..........+..+++ +.-.-.| +|.|... ..+..=.
T Consensus 16 L~V~v~~A~~L~~~d~~--g~~dpyvkv~l~~~~~~~~~~kT~v~~---------~t~nP~w-ne~f~f~i~~~~~~~~~ 83 (134)
T cd08403 16 LTLTIIKARNLKAMDIT--GFSDPYVKVSLMCEGRRLKKKKTSVKK---------NTLNPTY-NEALVFDVPPENVDNVS 83 (134)
T ss_pred EEEEEEEeeCCCccccC--CCCCceEEEEEEeCCcccceecCCccc---------CCCCCcc-cceEEEECCHHHhCCCE
Confidence 55566699988776421 122455555542111111101112222 1224679 9998833 2233334
Q ss_pred EEEEEEecCCcCcccceeEEEEEeeehh
Q 005345 95 LHFTIFNGLNQGQRQKVTAMGTATLNLA 122 (701)
Q Consensus 95 vaFtVf~g~nqg~K~K~~v~GtasLNLA 122 (701)
|.|+|+.-...| ++ -++|.+.|.+.
T Consensus 84 l~~~v~d~~~~~-~~--~~IG~~~l~~~ 108 (134)
T cd08403 84 LIIAVVDYDRVG-HN--ELIGVCRVGPN 108 (134)
T ss_pred EEEEEEECCCCC-CC--ceeEEEEECCC
Confidence 778898644332 23 48999999876
No 112
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=27.68 E-value=65 Score=29.95 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=31.7
Q ss_pred hhHHhhhchHHHHhhhccHHHHhhCCCCCCChhhHhhhc-------ccceeeecCCceeEe
Q 005345 444 FDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQ-------ICPLFVVPENSFVGF 497 (701)
Q Consensus 444 fD~LIreGS~EWR~LCene~y~~~FPDKHFDLETVl~A~-------iRPl~V~p~kSFvGF 497 (701)
++.||+..+..||.|=.+. +..+.+.+++.= =|||.|..++-+|||
T Consensus 53 ~~~lin~~~~~~k~l~~~~--------~~ls~~e~i~ll~~~p~LikRPIi~~~~~~~vG~ 105 (131)
T PRK01655 53 TDEIISTRSKVFQKLNVDV--------ESLSLQDLIKLISDNPGLLRRPIIIDEKRLQVGY 105 (131)
T ss_pred HHHHHhcCcHHHHhCCCCc--------ccCCHHHHHHHHHhCcceEeCCEEEECCEEEecC
Confidence 5777777788888773332 234556665542 289999999999995
No 113
>cd02417 Peptidase_C39_likeA A sub-family of peptidase C39 which contains Cyclolysin and Hemolysin processing peptidases. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this
Probab=27.52 E-value=67 Score=27.57 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=17.7
Q ss_pred CCcEEEEEecCeeEEE-EEeceEEEEecc
Q 005345 532 DPSIYIISWNDHFFVL-KIEQEAYYIIDT 559 (701)
Q Consensus 532 ~p~iYIVSWNDHFFVL-Kve~dayYIIDT 559 (701)
-|.|.. -+++||+|| ++..+.++|.|.
T Consensus 70 lP~I~~-~~~g~~~Vl~~~~~~~~~i~dp 97 (121)
T cd02417 70 LPALAW-DDDGGHFILAKLDGQKYLIQDP 97 (121)
T ss_pred CCEEEE-ccCCCEEEEEEEcCCCEEEECC
Confidence 365544 345588887 566677788775
No 114
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=26.92 E-value=8.5 Score=35.39 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=44.5
Q ss_pred ChhhHhhhcccce--eee--cCCceeEeecCCCCCCCCCccccccCCChhHHHHHHhhcCC-CCCcEEEEEecCeeEEEE
Q 005345 474 DLETVLEAQICPL--FVV--PENSFVGFFHPEGLELGGNFNFLHDAMSFDSIWDEIIRCGS-TDPSIYIISWNDHFFVLK 548 (701)
Q Consensus 474 DLETVl~A~iRPl--~V~--p~kSFvGFF~Peg~~~~~~fdfL~gAmSFD~IW~Ei~~~~~-~~p~iYIVSWNDHFFVLK 548 (701)
++.+.|++|||=| .|. +++. ..++|- . ++.+.++|+++-++|..... ....+-|++.++|. .
T Consensus 31 ~i~~QL~~GiR~lDlrv~~~~~~~-~~v~Hg-------~--~~~~~~~~~dvL~~i~~fl~~~p~E~VIl~~~~~~---~ 97 (146)
T PF00388_consen 31 SIREQLESGIRYLDLRVWDGNDGE-LVVYHG-------I--TSTSGITFEDVLNDIRDFLFEHPSEPVILSLKHEY---S 97 (146)
T ss_dssp HHHHHHHTT--EEEEEEEEETTSS-EEEEET-------T--SEE-EEEHHHHHHHHHHHTTHSTTS-EEEEEEEES---T
T ss_pred hHHHHHhccCceEEEEEEcCCCCc-eEEEeC-------C--EeeeeEeHHHHHHHHHHHHhcCCCeEEEEEeeccc---c
Confidence 4677899999974 443 2221 122221 0 12245799999999988552 22334566666655 2
Q ss_pred Eece---EEEEecccchhhhhc
Q 005345 549 IEQE---AYYIIDTLGERLYEG 567 (701)
Q Consensus 549 ve~d---ayYIIDTLGERL~EG 567 (701)
.+.+ +-++.++||.+||.-
T Consensus 98 ~~~~~~~~~~~~~~l~~~l~~~ 119 (146)
T PF00388_consen 98 PEQQNKLAEILKEILGDRLYQP 119 (146)
T ss_dssp HHHHHHHHHHHHHHHGGGBTTS
T ss_pred hhhHHHHHHHHHHHHhhhhcCC
Confidence 2223 345778888888754
No 115
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=25.92 E-value=5.1e+02 Score=23.91 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=57.6
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccch--hhhhhhhhcccccCCCCCCceeeecCcccccc--ccccc-
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFG--LRRKILMINLTEEGDEVGDGVVQWNNQDFHYS--GHVFP- 92 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~--slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k--~~F~P- 92 (701)
.+|+|.++.+|.... ....-..|.|.--||+..-. ..|..+++ -| -.=-| ||.|... +.-.|
T Consensus 2 L~V~Vi~A~~L~~~d---~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~-~t--------lnPvw-NE~f~F~v~~~~~~~ 68 (120)
T cd08395 2 VTVKVVAANDLKWQT---TGMFRPFVEVNLIGPHLSDKKRKFATKSKN-NN--------WSPKY-NETFQFILGNEDDPE 68 (120)
T ss_pred EEEEEEECcCCCccc---CCCCCCEEEEEEecCCCcccccEeeeEEec-CC--------CCCcc-CcEEEEEeeCcCCCc
Confidence 345566888876542 11234566666567552211 01222222 11 12369 9999844 21123
Q ss_pred -eeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeee
Q 005345 93 -WELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLT 140 (701)
Q Consensus 93 -WevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLs 140 (701)
=.|.|.|+.-. ...++. +||.+.|.|+++...- ....-+||.
T Consensus 69 ~~~L~~~V~D~d-~~~~dd--~IG~~~l~l~~~~~~~---~~~~w~~L~ 111 (120)
T cd08395 69 SYELHICVKDYC-FARDDR--LVGVTVLQLRDIAQAG---SCACWLPLG 111 (120)
T ss_pred eeEEEEEEEEec-ccCCCC--EEEEEEEEHHHCcCCC---cEEEEEECc
Confidence 24778888532 445555 7999999999998554 345556663
No 116
>PRK10853 putative reductase; Provisional
Probab=25.72 E-value=1.1e+02 Score=28.37 Aligned_cols=46 Identities=26% Similarity=0.522 Sum_probs=28.9
Q ss_pred hHHhhhchHHHHhhhccHHHHhhCCCCCC-ChhhHhhh---c----ccceeeecC-CceeEe
Q 005345 445 DNLIREGSLDWRNLCENEEYIRRFPDKHF-DLETVLEA---Q----ICPLFVVPE-NSFVGF 497 (701)
Q Consensus 445 D~LIreGS~EWR~LCene~y~~~FPDKHF-DLETVl~A---~----iRPl~V~p~-kSFvGF 497 (701)
|.||+..+..||+|=.++. .+- +.+.++++ + =|||.|..+ +-.|||
T Consensus 52 ~~l~n~~~~~~r~L~~~~k-------~~~~~~~e~~~ll~~~P~LikRPIv~~~~~~~~vGf 106 (118)
T PRK10853 52 EALLNTRGTTWRKLDETQR-------NAITDAASAAALMLEQPAIIKRPLLCAPGKPMLLGF 106 (118)
T ss_pred HHHHhcCCchHHhCCHhHh-------hcCCCHHHHHHHHHhCcCeeeccEEEeCCCeEEEcC
Confidence 6678888888888743321 011 33444443 2 199999876 588995
No 117
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=25.53 E-value=3.3e+02 Score=25.40 Aligned_cols=89 Identities=9% Similarity=0.057 Sum_probs=47.8
Q ss_pred EEEEEEeecCCCCCCCChhhhceEEEEEEecCccccchhhhhhhhhcccccCCCCCCceeeecCcccccc---cccccee
Q 005345 18 AFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLFSFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS---GHVFPWE 94 (701)
Q Consensus 18 V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k---~~F~PWe 94 (701)
+.|.|.++.+|......... -..|.|.--.-.......+.+++|+ | -.-.| ||.|... ..+.==.
T Consensus 17 L~V~Vi~A~nL~~~~~~g~~--DpyVkv~l~~~~~~~~k~kT~v~k~-t--------~nP~~-nE~f~F~v~~~~l~~~~ 84 (136)
T cd08406 17 LTVVVVKARNLVWDNGKTTA--DPFVKVYLLQDGRKISKKKTSVKRD-D--------TNPIF-NEAMIFSVPAIVLQDLS 84 (136)
T ss_pred EEEEEEEeeCCCCccCCCCC--CeEEEEEEEeCCccccccCCccccC-C--------CCCee-ceeEEEECCHHHhCCcE
Confidence 55666699998875422122 3455555422111122123334431 1 13569 9998854 2334455
Q ss_pred EEEEEEecCCcCcccceeEEEEEeeeh
Q 005345 95 LHFTIFNGLNQGQRQKVTAMGTATLNL 121 (701)
Q Consensus 95 vaFtVf~g~nqg~K~K~~v~GtasLNL 121 (701)
|.|+|+.-.. ..++. .||.+.|-.
T Consensus 85 l~~~V~~~d~-~~~~~--~iG~v~lg~ 108 (136)
T cd08406 85 LRVTVAESTE-DGKTP--NVGHVIIGP 108 (136)
T ss_pred EEEEEEeCCC-CCCCC--eeEEEEECC
Confidence 8899997543 23443 689988844
No 118
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=25.11 E-value=77 Score=28.45 Aligned_cols=48 Identities=15% Similarity=0.332 Sum_probs=30.8
Q ss_pred hhHHhhhchHHHHhhhccHHHHhhCCCCCCChhhHhhhc-------ccceeeecCCceeEeecC
Q 005345 444 FDNLIREGSLDWRNLCENEEYIRRFPDKHFDLETVLEAQ-------ICPLFVVPENSFVGFFHP 500 (701)
Q Consensus 444 fD~LIreGS~EWR~LCene~y~~~FPDKHFDLETVl~A~-------iRPl~V~p~kSFvGFF~P 500 (701)
++.||+..+..||.|=.+. .-.+.+.++++= =|||.|..++-+||| .|
T Consensus 53 ~~~l~n~~~~~~k~l~~~~--------~~ls~~e~i~~l~~~p~LikRPii~~~~~~~vG~-~~ 107 (115)
T cd03032 53 VEDIISTRSKAFKNLNIDI--------DELSLSELIRLISEHPSLLRRPIIIDEKRLQIGY-NE 107 (115)
T ss_pred HHHHHhcCcHHHHHcCCCc--------ccCCHHHHHHHHHhChhheeCCEEEeCCEEEeCC-CH
Confidence 4667777777777663221 124545555442 299999999999996 44
No 119
>PLN02270 phospholipase D alpha
Probab=25.03 E-value=1.8e+02 Score=35.57 Aligned_cols=76 Identities=18% Similarity=0.341 Sum_probs=55.7
Q ss_pred eeecCcccc-ccccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeeeecCCCcc-CCceeee
Q 005345 77 VQWNNQDFH-YSGHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLTVSGDTIE-GDPYLCL 154 (701)
Q Consensus 77 VeW~~EEFe-~k~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLsv~~g~~e-~~psL~l 154 (701)
=.| +|.|. +-+..- =+|.|+|=..--- ...+||+|.|-..+..+-. +++--+||--..+..- ..+-|||
T Consensus 73 p~w-~e~f~i~~ah~~-~~v~f~vkd~~~~----g~~~ig~~~~p~~~~~~g~---~i~~~~~~~~~~~~p~~~~~~~~~ 143 (808)
T PLN02270 73 PRW-YESFHIYCAHMA-SNIIFTVKDDNPI----GATLIGRAYIPVEEILDGE---EVDRWVEILDNDKNPIHGGSKIHV 143 (808)
T ss_pred Ccc-ccceEEeeccCc-ceEEEEEecCCcc----CceEEEEEEEEHHHhcCCC---ccccEEeccCCCCCcCCCCCEEEE
Confidence 479 99999 332222 5788998432222 3469999999999988854 5888899888887554 5589999
Q ss_pred EEEeeee
Q 005345 155 SFRLIES 161 (701)
Q Consensus 155 Slsl~El 161 (701)
+|.|..+
T Consensus 144 ~~~f~~~ 150 (808)
T PLN02270 144 KLQYFEV 150 (808)
T ss_pred EEEEEEc
Confidence 9999663
No 120
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=24.83 E-value=1.3e+02 Score=27.64 Aligned_cols=14 Identities=43% Similarity=0.778 Sum_probs=12.4
Q ss_pred cceeeecCCceeEe
Q 005345 484 CPLFVVPENSFVGF 497 (701)
Q Consensus 484 RPl~V~p~kSFvGF 497 (701)
|||.+...+-.|||
T Consensus 90 RPIv~~~~~~~vG~ 103 (113)
T cd03033 90 RPLMQVGDRRMVGF 103 (113)
T ss_pred CCeEEECCEEEecC
Confidence 99988888889995
No 121
>PF02323 ELH: Egg-laying hormone precursor ; InterPro: IPR003424 This family consists of egg-laying hormone (ELH) precursor and atrial gland peptides from the little (Aplysia parvula) and california (Aplysia californica) sea hares. The family also includes ovulation prohormone precursor from the great pond snail (Lymnaea stagnalis). This family thus represents a conserved gastropoda ovulation and egg production prohormone. Note that many of the proteins present are further cleaved to give individual peptides []. Neuropeptidergic bag cells of the marine mollusc A. californica synthesize an egg-laying hormone (ELH) precursor protein which is cleaved to generate several bioacitve peptides including ELH, bag cell peptides (BCP) and acidic peptide (AP) [].; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=24.51 E-value=86 Score=33.11 Aligned_cols=34 Identities=12% Similarity=0.051 Sum_probs=22.4
Q ss_pred ceeeeccccccccccccccccccccccccccccc
Q 005345 283 GWIYYRSCNLDCVENSKSLQQTVKRGILPWSTRK 316 (701)
Q Consensus 283 ~wiyys~rksd~ge~~~s~~q~skr~il~Wrkrk 316 (701)
-.-||+-||--+|++.|+..|+.-----+||||.
T Consensus 145 rlrfy~~rkraag~eeqSE~~~~e~eShSrr~RS 178 (255)
T PF02323_consen 145 RLRFYSLRKRAAGDEEQSEGQNPETESHSRRKRS 178 (255)
T ss_pred ceeeeeccccccccccccccCCCcccCcchhhcc
Confidence 3458999999999766555544332223788887
No 122
>COG5578 Predicted integral membrane protein [Function unknown]
Probab=24.10 E-value=57 Score=33.72 Aligned_cols=27 Identities=41% Similarity=0.591 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHhhCCCCCCChhhhhH
Q 005345 419 ACTALVAVIANWLQCNPKEMPTKSEFDN 446 (701)
Q Consensus 419 ACTaLvaviA~Wl~~N~~~mPt~sqfD~ 446 (701)
|-+|+.+|+..|+|.|.+ .|+-.+|=.
T Consensus 43 AT~Alf~v~Rkw~~g~~d-~pi~k~f~~ 69 (208)
T COG5578 43 ATAALFAVIRKWLQGDKD-VPIFKTFWQ 69 (208)
T ss_pred HHHHHHHHHHHHhcCCCC-CcHHHHHHH
Confidence 778999999999999999 899888733
No 123
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=23.79 E-value=18 Score=33.76 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=49.5
Q ss_pred ChhhHhhhcccceeeecCCceeEeecCCCCCCCCCccccccC-----CChhHHHHHHhhcC-CCCCcEEEEEecCeeEEE
Q 005345 474 DLETVLEAQICPLFVVPENSFVGFFHPEGLELGGNFNFLHDA-----MSFDSIWDEIIRCG-STDPSIYIISWNDHFFVL 547 (701)
Q Consensus 474 DLETVl~A~iRPl~V~p~kSFvGFF~Peg~~~~~~fdfL~gA-----mSFD~IW~Ei~~~~-~~~p~iYIVSWNDHFFVL 547 (701)
++...|++|+|=+-+.-.. .+ + +.+-..||. ++|+++-++|.... ...+.+-|++-++|+
T Consensus 33 ~i~~qL~~GvR~~dirv~~------~~----~-~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~p~e~VIl~l~~~~--- 98 (135)
T smart00148 33 GYIQALDHGCRCVELDCWD------GP----D-GEPVIYHGHTFTLPIKLSEVLEAIKDFAFVTSPYPVILSLENHC--- 98 (135)
T ss_pred HHHHHHHhCCCEEEEEccc------CC----C-CCEEEEECCcccccEEHHHHHHHHHHHHHhCCCCcEEEeehhhC---
Confidence 3445788999864443211 01 1 134556665 79999999998844 223345788888886
Q ss_pred EEece---EEEEecccchhhhh
Q 005345 548 KIEQE---AYYIIDTLGERLYE 566 (701)
Q Consensus 548 Kve~d---ayYIIDTLGERL~E 566 (701)
..+.. +=+|.++||.+||.
T Consensus 99 ~~~~~~~l~~~l~~~~g~~l~~ 120 (135)
T smart00148 99 SPDQQAKMAQMFKEIFGDMLYT 120 (135)
T ss_pred CHHHHHHHHHHHHHHHhHhhcC
Confidence 33332 23678999999974
No 124
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=23.70 E-value=51 Score=29.22 Aligned_cols=72 Identities=22% Similarity=0.445 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHHHhhCCC------C---CCChhhh-----------hHHhhhchHHHHhhhccHHHHhhCCCCCCChhh
Q 005345 418 SACTALVAVIANWLQCNPK------E---MPTKSEF-----------DNLIREGSLDWRNLCENEEYIRRFPDKHFDLET 477 (701)
Q Consensus 418 sACTaLvaviA~Wl~~N~~------~---mPt~sqf-----------D~LIreGS~EWR~LCene~y~~~FPDKHFDLET 477 (701)
..|+.+--++ +||.+|.- + =|++.|+ +.||+.-+..||+|= ..-.+..+.+.
T Consensus 4 ~~C~t~rka~-~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~-------~~~~~~~s~~e 75 (110)
T PF03960_consen 4 PNCSTCRKAL-KWLEENGIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELG-------KLKKDDLSDEE 75 (110)
T ss_dssp TT-HHHHHHH-HHHHHTT--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTT-------HHHCTTSBHHH
T ss_pred CCCHHHHHHH-HHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhh-------hhhhhhhhhHH
Confidence 3466655544 58888741 1 1556555 555555555666654 01235677776
Q ss_pred Hhhhc-------ccceeeecCCceeEe
Q 005345 478 VLEAQ-------ICPLFVVPENSFVGF 497 (701)
Q Consensus 478 Vl~A~-------iRPl~V~p~kSFvGF 497 (701)
+++.= -|||.|.+.+-++||
T Consensus 76 ~i~~l~~~p~LikRPIi~~~~~~~iG~ 102 (110)
T PF03960_consen 76 LIELLLENPKLIKRPIIVDGKKAVIGF 102 (110)
T ss_dssp HHHHHHHSGGGB-SSEEEETTEEEESS
T ss_pred HHHHHHhChhheeCCEEEECCEEEEeC
Confidence 66652 299999999999997
No 125
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=23.16 E-value=81 Score=35.97 Aligned_cols=46 Identities=30% Similarity=0.667 Sum_probs=31.4
Q ss_pred EEEEec-CeeEEE-EEeceEEEEecc-cchh-----hhhccCceEEEEecCCcc
Q 005345 536 YIISWN-DHFFVL-KIEQEAYYIIDT-LGER-----LYEGCNQAYILKFDKDAT 581 (701)
Q Consensus 536 YIVSWN-DHFFVL-Kve~dayYIIDT-LGER-----L~EGC~qAYiLkFD~~t~ 581 (701)
.|+-|| +||.|| |+..+.+||+|- .|.| =|+-+=.+|+|-|..+..
T Consensus 78 ~i~~~~~~h~vvl~~~~~~~~~i~dP~~g~~~~~~~e~~~~~~g~~l~~~~~~~ 131 (710)
T TIGR03796 78 YIVFWNFNHFVVVEGFRGGRVYLNDPALGPRTVSLEEFDESFTGVVLTFEPGPE 131 (710)
T ss_pred EEEEEcCCcEEEEEEEeCCEEEEECCCCCCEEccHHHHHhhCCCeEEEEEECcc
Confidence 366688 599885 688899999994 4543 133333568888876554
No 126
>PF09179 TilS: TilS substrate binding domain; InterPro: IPR015262 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the substrate-binding domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 1NI5_A 3A2K_A.
Probab=21.75 E-value=70 Score=25.58 Aligned_cols=26 Identities=19% Similarity=0.563 Sum_probs=19.6
Q ss_pred HHHHHHHHhhCCCCCCChhhhhHHhh
Q 005345 424 VAVIANWLQCNPKEMPTKSEFDNLIR 449 (701)
Q Consensus 424 vaviA~Wl~~N~~~mPt~sqfD~LIr 449 (701)
-.+|-.||+.+...||+..+.+.+++
T Consensus 15 ~~lLR~wL~~~g~~~ps~~~l~~i~~ 40 (69)
T PF09179_consen 15 RRLLRRWLRQLGLPMPSQAHLEQILR 40 (69)
T ss_dssp HHHHHHHHHHTT-T--HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 35889999999888999999988765
No 127
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=21.69 E-value=3.3e+02 Score=25.60 Aligned_cols=63 Identities=10% Similarity=0.229 Sum_probs=39.5
Q ss_pred eeecCccccccccccceeEEEEEEecCCcCcccceeEEEEEeeehhhhcccccccceeeeeeee
Q 005345 77 VQWNNQDFHYSGHVFPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANSDKEKELQIKVPLT 140 (701)
Q Consensus 77 VeW~~EEFe~k~~F~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~a~eke~ei~lPLs 140 (701)
=.|+||+|.... ...=.|-|.|++-.+.+..+.--.||.+.++|+++.......+...-.||.
T Consensus 58 P~W~nE~f~f~v-~~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~ 120 (137)
T cd08691 58 PVWHREQFVFVG-LPTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLG 120 (137)
T ss_pred CceEceEEEEEc-CCCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECC
Confidence 479889998331 111258899987544333211259999999999998776554444434443
No 128
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=21.68 E-value=3.2e+02 Score=25.82 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=29.7
Q ss_pred eeecCcccccc-ccccceeEEEEEEecC------CcCcccceeEEEEEeeehhhhccc
Q 005345 77 VQWNNQDFHYS-GHVFPWELHFTIFNGL------NQGQRQKVTAMGTATLNLAKYANS 127 (701)
Q Consensus 77 VeW~~EEFe~k-~~F~PWevaFtVf~g~------nqg~K~K~~v~GtasLNLAEyAS~ 127 (701)
=.| ||+|+.. . .+=.+.|+|+.-- +...+.++.--|++.||+.-|...
T Consensus 44 PvW-nE~F~i~l~--~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~~~~~~~ 98 (118)
T cd08686 44 PNW-NEEFEIELE--GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDPQSLQTK 98 (118)
T ss_pred Ccc-ceEEEEEeC--CCCEEEEEEEEcccccccccccCcccEEEEEEEEECHHHhccC
Confidence 369 9999965 3 2447889999642 455555533335555666655444
No 129
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=21.53 E-value=3.4e+02 Score=25.91 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=51.7
Q ss_pred eEEEEEEEeecCCCCCCCChhhhceEEEEEEecCcc-ccchhhhhhhhhcccccCCCCCCceeeecCcccccc----ccc
Q 005345 16 YEAFTVIQRLEGFNIKQSDNEARQRLVVEIKWKGLF-SFFGLRRKILMINLTEEGDEVGDGVVQWNNQDFHYS----GHV 90 (701)
Q Consensus 16 f~V~lvv~rleG~~~~~~~~~~~~~~vVEikWKGPk-~~l~slrrsvkrN~T~e~~~~~~~~VeW~~EEFe~k----~~F 90 (701)
-.+.|.|.++.||+........ -..|.|.- .|. ......|..+.+| .-.=.| ||.|... ..+
T Consensus 27 g~L~V~Vi~A~nL~~~d~~g~~--DPYVkv~l-~~~~~~~~~~kT~vi~~---------t~nP~W-nE~f~f~~~~~~~l 93 (162)
T cd04020 27 GELHVWVKEAKNLPALKSGGTS--DSFVKCYL-LPDKSKKSKQKTPVVKK---------SVNPVW-NHTFVYDGVSPEDL 93 (162)
T ss_pred ceEEEEEEeeeCCCCCCCCCCC--CCEEEEEE-EcCCCCCcceeCCccCC---------CCCCCC-CCEEEEecCCHHHh
Confidence 3467777788888776422122 23444433 222 1111112223221 113479 8988843 122
Q ss_pred cceeEEEEEEecCCcCcccceeEEEEEeeehhhhccc
Q 005345 91 FPWELHFTIFNGLNQGQRQKVTAMGTATLNLAKYANS 127 (701)
Q Consensus 91 ~PWevaFtVf~g~nqg~K~K~~v~GtasLNLAEyAS~ 127 (701)
.-=.|.|+|++--.. .+-.+||.+.++|+++.+.
T Consensus 94 ~~~~L~i~V~d~d~~---~~d~~lG~v~i~l~~~~~~ 127 (162)
T cd04020 94 SQACLELTVWDHDKL---SSNDFLGGVRLGLGTGKSY 127 (162)
T ss_pred CCCEEEEEEEeCCCC---CCCceEEEEEEeCCccccC
Confidence 223578899853322 2345999999999987643
No 130
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=20.59 E-value=5.9e+02 Score=22.39 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=35.1
Q ss_pred eeecCcccccc---ccccceeEEEEEEecCCcCc-ccceeEEEEEeeehhhhcccccccceeeeeee
Q 005345 77 VQWNNQDFHYS---GHVFPWELHFTIFNGLNQGQ-RQKVTAMGTATLNLAKYANSDKEKELQIKVPL 139 (701)
Q Consensus 77 VeW~~EEFe~k---~~F~PWevaFtVf~g~nqg~-K~K~~v~GtasLNLAEyAS~a~eke~ei~lPL 139 (701)
=.| +|+|... .... .|.|.|+.--..+. ..+-.+||.+.++|+++.+... ..+.++|
T Consensus 52 P~w-ne~f~f~~~~~~~~--~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~---~~~~~~l 112 (120)
T cd04048 52 PDF-VTTFTVDYYFEEVQ--KLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPG---QKLTLPL 112 (120)
T ss_pred CCc-eEEEEEEEEeEeee--EEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCC---cEEEEEc
Confidence 479 8888732 1222 57788885433210 1233589999999999987543 3344455
Done!