BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005346
         (701 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
           Human O- Glcnac Transferase
 pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
           Human O- Glcnac Transferase
 pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
           Glycopeptide
 pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
           Glycopeptide
 pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
           Glycopeptide
 pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
           Glycopeptide
 pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
           Udp-5sglcnac And Substrate Peptide
 pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
           Udp-5sglcnac And Substrate Peptide
 pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
           Udp-5sglcnac And Substrate Peptide
 pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
           Udp-5sglcnac And Substrate Peptide
 pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
           With Udp And A Glycopeptide
 pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
           With Udp And A Glycopeptide
 pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac And A Peptide Substrate
 pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac And A Peptide Substrate
 pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
           And A Thioglycopeptide
 pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
           And A Thioglycopeptide
 pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-Glcnac
 pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-Glcnac
 pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-Glcnac
 pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-Glcnac
 pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac
 pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac
 pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac
 pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac
          Length = 723

 Score = 33.5 bits (75), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 346 PAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIY 397
           PAE  E Y   LA +   F       I D  NMF HL++  V   +  G IY
Sbjct: 367 PAEVAEQYSEKLAYMPHTF------FIGDHANMFPHLKKKAVIDFKSNGHIY 412


>pdb|1XI4|A Chain A, Clathrin D6 Coat
 pdb|1XI4|B Chain B, Clathrin D6 Coat
 pdb|1XI4|C Chain C, Clathrin D6 Coat
 pdb|1XI4|D Chain D, Clathrin D6 Coat
 pdb|1XI4|E Chain E, Clathrin D6 Coat
 pdb|1XI4|F Chain F, Clathrin D6 Coat
 pdb|1XI4|G Chain G, Clathrin D6 Coat
 pdb|1XI4|H Chain H, Clathrin D6 Coat
 pdb|1XI4|I Chain I, Clathrin D6 Coat
 pdb|1XI5|A Chain A, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|B Chain B, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|C Chain C, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|D Chain D, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|E Chain E, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|F Chain F, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|G Chain G, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|H Chain H, Clathrin D6 Coat With Auxilin J-Domain
 pdb|1XI5|I Chain I, Clathrin D6 Coat With Auxilin J-Domain
 pdb|3IYV|A Chain A, Clathrin D6 Coat As Full-Length Triskelions
 pdb|3IYV|B Chain B, Clathrin D6 Coat As Full-Length Triskelions
 pdb|3IYV|C Chain C, Clathrin D6 Coat As Full-Length Triskelions
 pdb|3IYV|D Chain D, Clathrin D6 Coat As Full-Length Triskelions
 pdb|3IYV|E Chain E, Clathrin D6 Coat As Full-Length Triskelions
 pdb|3IYV|F Chain F, Clathrin D6 Coat As Full-Length Triskelions
 pdb|3IYV|G Chain G, Clathrin D6 Coat As Full-Length Triskelions
 pdb|3IYV|H Chain H, Clathrin D6 Coat As Full-Length Triskelions
 pdb|3IYV|I Chain I, Clathrin D6 Coat As Full-Length Triskelions
          Length = 1630

 Score = 32.0 bits (71), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 82/220 (37%), Gaps = 37/220 (16%)

Query: 372  IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSL-LVGKLDEC------ 424
            I   +N  + L++N     R +G      + H    A ERG C L L+   +E       
Sbjct: 884  IDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSL 943

Query: 425  ----------RLWLGLDSDKSPYRNPAIVDFVLENSKEADD-------------NDLPG- 460
                       LW  +  + +PYR P I   V     E  D              DLP  
Sbjct: 944  SRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNE 1003

Query: 461  LCKLLETW-LAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLXXXXXIVR 519
            L +LLE   L   VF   R+  ++        D   V+ Y+ RL+ N  +P      I  
Sbjct: 1004 LIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD-NYDAPDIANIAISN 1062

Query: 520  IGATEATAVLDH--VKSSTIQALQKVFPLGQGDKAVKYVE 557
                EA A+     V +S +Q L  +  +G  D+A ++ E
Sbjct: 1063 ELFEEAFAIFRKFDVNTSAVQVL--IEHIGNLDRAYEFAE 1100


>pdb|3E1Q|A Chain A, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
           With Iron.
 pdb|3E1Q|B Chain B, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
           With Iron.
 pdb|3E1Q|C Chain C, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
           With Iron.
 pdb|3E1Q|D Chain D, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
           With Iron.
 pdb|3E1Q|E Chain E, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
           With Iron.
 pdb|3E1Q|F Chain F, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
           With Iron.
 pdb|3E1Q|G Chain G, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
           With Iron.
 pdb|3E1Q|H Chain H, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
           With Iron.
 pdb|3E1Q|I Chain I, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
           With Iron.
 pdb|3E1Q|J Chain J, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
           With Iron.
 pdb|3E1Q|K Chain K, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
           With Iron.
 pdb|3E1Q|L Chain L, Crystal Structure Of W133f Variant E. Coli Bacterioferritn
           With Iron
          Length = 158

 Score = 29.3 bits (64), Expect = 7.7,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 21/124 (16%)

Query: 151 EYNQGLAD-DHADTILTEVPW-DKVPGALLVLQEAGETEVVLRIGE---SLLRERLPKSF 205
           EY++ + +  HAD  +  + + + +P     LQ+ G+    L IGE    +LR  L    
Sbjct: 44  EYHESIDEMKHADRYIERILFLEGLPN----LQDLGK----LNIGEDVEEMLRSDLALEL 95

Query: 206 KQDVVLAMALAYVD-----ISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDLQA 260
                L  A+ Y D     +SRD M     D  G  + LE  L L+Q+ G   L   LQA
Sbjct: 96  DGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDFLETELDLIQKMG---LQNYLQA 152

Query: 261 QIDE 264
           QI E
Sbjct: 153 QIRE 156


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,105,903
Number of Sequences: 62578
Number of extensions: 745512
Number of successful extensions: 1696
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1696
Number of HSP's gapped (non-prelim): 6
length of query: 701
length of database: 14,973,337
effective HSP length: 106
effective length of query: 595
effective length of database: 8,340,069
effective search space: 4962341055
effective search space used: 4962341055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)