Query 005346
Match_columns 701
No_of_seqs 266 out of 1431
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 22:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.7 2.6E-18 5.6E-23 184.7 7.1 71 89-159 2-73 (371)
2 KOG0713 Molecular chaperone (D 99.7 9.5E-17 2.1E-21 169.7 6.4 69 90-158 15-84 (336)
3 PRK14288 chaperone protein Dna 99.6 6.5E-16 1.4E-20 166.5 6.7 68 90-157 2-70 (369)
4 KOG0691 Molecular chaperone (D 99.6 1.3E-15 2.8E-20 160.2 6.3 94 89-183 3-109 (296)
5 PRK14279 chaperone protein Dna 99.6 3.8E-15 8.3E-20 161.8 6.7 67 90-156 8-75 (392)
6 PRK14296 chaperone protein Dna 99.5 5.7E-15 1.2E-19 159.5 6.4 65 91-156 4-69 (372)
7 PRK14286 chaperone protein Dna 99.5 1.1E-14 2.3E-19 157.4 6.5 67 91-157 4-71 (372)
8 PRK14295 chaperone protein Dna 99.5 1.5E-14 3.3E-19 157.0 6.8 67 88-154 6-73 (389)
9 PRK14285 chaperone protein Dna 99.5 1.7E-14 3.6E-19 155.5 6.9 68 90-157 2-70 (365)
10 PRK14298 chaperone protein Dna 99.5 1.7E-14 3.6E-19 156.2 6.8 70 87-157 1-71 (377)
11 PRK14277 chaperone protein Dna 99.5 2E-14 4.2E-19 155.9 7.2 69 89-157 3-72 (386)
12 KOG0712 Molecular chaperone (D 99.5 2.2E-14 4.7E-19 153.0 6.3 67 90-159 3-70 (337)
13 PRK14282 chaperone protein Dna 99.5 2.8E-14 6E-19 153.8 7.0 68 90-157 3-72 (369)
14 PRK14278 chaperone protein Dna 99.5 2.8E-14 6.1E-19 154.4 6.8 66 90-156 2-68 (378)
15 PRK14284 chaperone protein Dna 99.5 3.2E-14 6.9E-19 154.5 6.7 67 91-157 1-68 (391)
16 PRK14287 chaperone protein Dna 99.5 4E-14 8.7E-19 152.9 6.8 66 91-157 4-70 (371)
17 PTZ00037 DnaJ_C chaperone prot 99.5 3.5E-14 7.5E-19 155.9 6.0 64 90-157 27-91 (421)
18 PRK14294 chaperone protein Dna 99.5 4.9E-14 1.1E-18 151.8 6.9 68 90-157 3-71 (366)
19 PRK14291 chaperone protein Dna 99.5 4.8E-14 1E-18 152.7 6.6 67 90-157 2-69 (382)
20 PRK14297 chaperone protein Dna 99.5 4.6E-14 9.9E-19 152.7 6.2 67 91-157 4-71 (380)
21 PRK14299 chaperone protein Dna 99.5 5.8E-14 1.2E-18 147.0 6.6 67 90-157 3-70 (291)
22 PRK14301 chaperone protein Dna 99.5 5.2E-14 1.1E-18 152.1 6.4 68 90-157 3-71 (373)
23 PF00226 DnaJ: DnaJ domain; I 99.5 5.4E-14 1.2E-18 114.8 4.9 62 92-153 1-64 (64)
24 PRK14281 chaperone protein Dna 99.5 5.8E-14 1.3E-18 152.8 6.7 68 90-157 2-70 (397)
25 PRK14283 chaperone protein Dna 99.5 6.5E-14 1.4E-18 151.4 6.8 67 90-157 4-71 (378)
26 PRK14276 chaperone protein Dna 99.4 6.6E-14 1.4E-18 151.5 5.9 66 91-157 4-70 (380)
27 PRK10767 chaperone protein Dna 99.4 1.1E-13 2.3E-18 149.2 7.0 68 90-157 3-71 (371)
28 PRK14290 chaperone protein Dna 99.4 1E-13 2.2E-18 149.4 6.5 68 90-157 2-71 (365)
29 KOG0715 Molecular chaperone (D 99.4 1.7E-13 3.7E-18 144.0 6.5 67 92-159 44-111 (288)
30 PRK14280 chaperone protein Dna 99.4 1.6E-13 3.6E-18 148.3 6.5 66 91-157 4-70 (376)
31 PRK14292 chaperone protein Dna 99.4 1.7E-13 3.7E-18 147.6 6.6 67 90-157 1-68 (371)
32 KOG0718 Molecular chaperone (D 99.4 2.5E-13 5.5E-18 148.4 6.3 70 91-160 9-82 (546)
33 PRK14289 chaperone protein Dna 99.4 3.7E-13 8.1E-18 145.8 7.0 68 90-157 4-72 (386)
34 KOG0716 Molecular chaperone (D 99.4 4.4E-13 9.6E-18 138.7 7.1 66 90-155 30-96 (279)
35 TIGR02349 DnaJ_bact chaperone 99.4 3E-13 6.6E-18 144.7 6.1 65 92-157 1-66 (354)
36 PRK14293 chaperone protein Dna 99.4 3.3E-13 7.1E-18 145.8 6.4 67 90-157 2-69 (374)
37 PTZ00341 Ring-infected erythro 99.4 4.6E-13 9.9E-18 156.4 7.8 69 90-159 572-641 (1136)
38 PRK14300 chaperone protein Dna 99.4 3.1E-13 6.8E-18 146.0 5.8 66 91-157 3-69 (372)
39 KOG0717 Molecular chaperone (D 99.4 3.8E-13 8.2E-18 146.9 5.9 66 91-156 8-75 (508)
40 PRK10266 curved DNA-binding pr 99.3 7.3E-13 1.6E-17 139.6 6.0 65 91-156 4-69 (306)
41 smart00271 DnaJ DnaJ molecular 99.3 3.4E-12 7.3E-17 102.4 6.3 58 91-148 1-60 (60)
42 COG2214 CbpA DnaJ-class molecu 99.3 4.5E-12 9.7E-17 120.5 6.1 68 88-155 3-72 (237)
43 cd06257 DnaJ DnaJ domain or J- 99.3 8.4E-12 1.8E-16 98.4 6.0 54 92-145 1-55 (55)
44 TIGR03835 termin_org_DnaJ term 99.2 3.9E-11 8.5E-16 138.0 7.6 68 91-159 2-70 (871)
45 KOG0719 Molecular chaperone (D 99.1 3.5E-11 7.6E-16 122.7 5.4 67 91-157 14-83 (264)
46 PRK05014 hscB co-chaperone Hsc 99.1 8.6E-10 1.9E-14 108.3 14.4 67 91-157 1-75 (171)
47 PRK03578 hscB co-chaperone Hsc 99.1 1.3E-09 2.8E-14 107.6 15.7 69 89-157 4-80 (176)
48 PHA03102 Small T antigen; Revi 99.1 5.9E-11 1.3E-15 115.0 4.2 66 92-161 6-74 (153)
49 KOG0721 Molecular chaperone (D 99.1 1.4E-10 3.1E-15 117.2 5.5 72 90-161 98-170 (230)
50 PRK00294 hscB co-chaperone Hsc 99.0 3E-09 6.5E-14 104.9 14.1 67 91-157 4-78 (173)
51 KOG0720 Molecular chaperone (D 99.0 2.6E-10 5.6E-15 125.1 5.8 70 90-160 234-304 (490)
52 PRK01356 hscB co-chaperone Hsc 99.0 1E-09 2.3E-14 107.3 6.9 67 91-157 2-74 (166)
53 KOG0624 dsRNA-activated protei 99.0 5.1E-10 1.1E-14 120.0 4.9 70 87-156 390-463 (504)
54 KOG0714 Molecular chaperone (D 98.9 8.4E-10 1.8E-14 110.3 4.1 68 90-157 2-71 (306)
55 KOG0722 Molecular chaperone (D 98.9 1.1E-09 2.5E-14 113.0 4.7 125 90-251 32-157 (329)
56 KOG0550 Molecular chaperone (D 98.8 3.2E-09 6.9E-14 115.9 4.4 72 86-157 368-441 (486)
57 PTZ00100 DnaJ chaperone protei 98.7 1.9E-08 4E-13 93.8 4.7 56 84-144 59-115 (116)
58 PRK09430 djlA Dna-J like membr 98.6 2.4E-08 5.2E-13 104.3 5.1 55 91-145 200-262 (267)
59 PHA02624 large T antigen; Prov 98.5 6.3E-08 1.4E-12 110.8 4.9 58 91-152 11-71 (647)
60 PRK01773 hscB co-chaperone Hsc 98.4 4.8E-06 1E-10 82.5 13.4 67 91-157 2-76 (173)
61 COG5407 SEC63 Preprotein trans 98.2 1.2E-06 2.5E-11 96.8 5.9 70 91-160 98-173 (610)
62 TIGR00714 hscB Fe-S protein as 98.1 4.2E-05 9.1E-10 74.5 13.3 55 103-157 3-63 (157)
63 COG5269 ZUO1 Ribosome-associat 97.7 2.8E-05 6.1E-10 81.8 4.3 70 91-160 43-118 (379)
64 KOG1150 Predicted molecular ch 97.7 5.2E-05 1.1E-09 76.9 5.9 62 90-151 52-115 (250)
65 KOG0568 Molecular chaperone (D 97.6 3.7E-05 8.1E-10 79.3 3.3 53 92-145 48-102 (342)
66 KOG0723 Molecular chaperone (D 96.6 0.0033 7.1E-08 58.5 5.4 49 94-146 59-108 (112)
67 KOG1789 Endocytosis protein RM 94.1 0.054 1.2E-06 65.9 4.7 50 92-144 1282-1336(2235)
68 COG1076 DjlA DnaJ-domain-conta 89.5 0.21 4.6E-06 49.4 2.1 53 91-143 113-173 (174)
69 KOG3192 Mitochondrial J-type c 87.8 0.8 1.7E-05 45.7 4.8 72 86-158 3-83 (168)
70 KOG0431 Auxilin-like protein a 85.6 1.1 2.4E-05 51.0 5.1 47 98-144 395-449 (453)
71 PF13446 RPT: A repeated domai 82.1 2.2 4.7E-05 35.4 4.2 30 92-121 6-35 (62)
72 PF03656 Pam16: Pam16; InterP 74.5 4 8.7E-05 39.3 4.1 48 93-144 60-108 (127)
73 COG1076 DjlA DnaJ-domain-conta 66.4 10 0.00023 37.6 5.2 69 92-160 2-78 (174)
74 PF14559 TPR_19: Tetratricopep 65.7 13 0.00028 29.7 4.7 44 372-430 7-50 (68)
75 PF13424 TPR_12: Tetratricopep 65.3 26 0.00056 28.9 6.6 63 179-248 14-78 (78)
76 PF11833 DUF3353: Protein of u 56.7 14 0.0003 37.9 4.1 44 100-150 1-44 (194)
77 PF13432 TPR_16: Tetratricopep 55.0 32 0.0007 27.4 5.3 43 372-429 13-55 (65)
78 PF13174 TPR_6: Tetratricopept 49.3 25 0.00054 24.1 3.4 24 406-429 1-24 (33)
79 PRK10803 tol-pal system protei 46.9 2.2E+02 0.0049 30.3 11.4 52 182-242 192-243 (263)
80 PRK11447 cellulose synthase su 40.9 4.8E+02 0.01 33.3 14.7 45 370-429 283-327 (1157)
81 PF13414 TPR_11: TPR repeat; P 38.8 1.4E+02 0.003 23.9 6.6 56 179-245 12-67 (69)
82 TIGR02267 Myxococcus xanthus p 35.2 12 0.00026 35.9 -0.1 28 455-482 89-116 (123)
83 PF13525 YfiO: Outer membrane 31.2 5.3E+02 0.012 25.8 10.8 75 181-256 53-127 (203)
84 PRK11447 cellulose synthase su 29.5 1.3E+03 0.028 29.5 18.7 25 219-245 466-490 (1157)
85 PF09543 DUF2379: Protein of u 29.1 19 0.0004 34.7 0.1 28 455-482 87-114 (121)
86 PF12688 TPR_5: Tetratrico pep 28.6 1.9E+02 0.0042 27.3 6.7 57 178-243 9-65 (120)
87 KOG3081 Vesicle coat complex C 27.6 1.4E+02 0.003 32.9 6.1 44 372-430 189-232 (299)
88 PRK10049 pgaA outer membrane p 27.4 1.2E+03 0.026 28.4 18.0 43 372-429 409-451 (765)
89 TIGR02917 PEP_TPR_lipo putativ 27.2 1E+03 0.022 27.5 15.8 23 406-428 262-284 (899)
90 KOG4162 Predicted calmodulin-b 27.0 1.3E+03 0.028 29.0 14.3 125 175-306 399-545 (799)
91 PF13432 TPR_16: Tetratricopep 26.6 3.2E+02 0.007 21.5 6.9 55 179-245 6-60 (65)
92 PRK15359 type III secretion sy 24.2 1.2E+02 0.0026 28.7 4.5 48 367-429 35-82 (144)
93 PF04190 DUF410: Protein of un 23.9 1.9E+02 0.0041 30.7 6.3 39 230-268 4-42 (260)
94 PF07719 TPR_2: Tetratricopept 23.8 1.6E+02 0.0034 20.2 4.0 29 215-245 2-30 (34)
95 PF07721 TPR_4: Tetratricopept 23.6 99 0.0022 21.3 2.9 22 408-429 4-25 (26)
96 PF13371 TPR_9: Tetratricopept 23.6 1.6E+02 0.0034 23.8 4.5 26 404-429 28-53 (73)
97 KOG0724 Zuotin and related mol 22.1 85 0.0018 33.9 3.5 54 102-155 3-61 (335)
98 PF13525 YfiO: Outer membrane 22.0 1.9E+02 0.0041 28.9 5.7 69 350-451 6-74 (203)
99 TIGR02552 LcrH_SycD type III s 21.8 4.8E+02 0.01 23.3 7.8 75 179-268 60-134 (135)
100 TIGR02795 tol_pal_ybgF tol-pal 21.3 3.8E+02 0.0082 22.8 6.7 59 178-245 47-105 (119)
101 PLN03088 SGT1, suppressor of 21.2 2.5E+02 0.0055 30.8 6.9 57 351-429 38-94 (356)
102 KOG1586 Protein required for f 21.1 36 0.00077 36.7 0.4 83 412-502 161-255 (288)
103 PRK15359 type III secretion sy 20.8 1.6E+02 0.0035 27.9 4.7 45 370-429 72-116 (144)
104 TIGR02552 LcrH_SycD type III s 20.3 4.3E+02 0.0093 23.6 7.1 43 372-429 67-109 (135)
105 PF13414 TPR_11: TPR repeat; P 20.2 2.1E+02 0.0045 22.8 4.6 46 369-429 16-62 (69)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.6e-18 Score=184.65 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=65.5
Q ss_pred cCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCC
Q 005346 89 IPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADD 159 (701)
Q Consensus 89 iPlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~e~ 159 (701)
...|||+||||+++||.+|||||||+|+++ |||++...++++++|+.|+|||||||||++|+.||++....
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~ 73 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAG 73 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccc
Confidence 457999999999999999999999999998 79999867778999999999999999999999999887554
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=9.5e-17 Score=169.74 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=65.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccC
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLAD 158 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~e 158 (701)
..|||+||||+++|+..|||+|||||+++ |||++.+++.+...|+.|+.||+|||||++|+.||...-+
T Consensus 15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEe 84 (336)
T KOG0713|consen 15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEE 84 (336)
T ss_pred CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHh
Confidence 36999999999999999999999999998 8999999999999999999999999999999999988633
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=6.5e-16 Score=166.54 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=62.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
..|||+||||+++||.+|||||||+++++ |||++..+..++++|+.|++||+|||||++|+.||++..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 57999999999999999999999999987 799986555678899999999999999999999998753
No 4
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.3e-15 Score=160.23 Aligned_cols=94 Identities=23% Similarity=0.327 Sum_probs=82.9
Q ss_pred cCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCCCCCCcccc
Q 005346 89 IPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTE 167 (701)
Q Consensus 89 iPlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~e~~~~~~~le 167 (701)
.-+|||.||||+.+||..||++|||+++++ |||+++.++.+.++|+.|.+||+||+|+++|..||..++.+..+. +..
T Consensus 3 ~~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~-~~~ 81 (296)
T KOG0691|consen 3 KDTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ-GRE 81 (296)
T ss_pred ccchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-hhh
Confidence 367999999999999999999999999976 899999988899999999999999999999999999998877654 333
Q ss_pred C------------CCccccchHHHHHHh
Q 005346 168 V------------PWDKVPGALLVLQEA 183 (701)
Q Consensus 168 i------------~~~~~~GAL~LLqEl 183 (701)
+ ....++|++.+++|+
T Consensus 82 d~~~~~r~~f~~dl~~~~~~~~a~~~~~ 109 (296)
T KOG0691|consen 82 DQADGFRKKFGSDLFERERGALALLKES 109 (296)
T ss_pred hHHHHHHHHhhhhhhhhHHHHHhHHhhh
Confidence 3 347888888888887
No 5
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=3.8e-15 Score=161.79 Aligned_cols=67 Identities=24% Similarity=0.412 Sum_probs=62.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L 156 (701)
..|||+||||+++|+.+|||+|||+++++ |||++...+.++++|+.|++||+|||||++|+.||++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 46999999999999999999999999987 89998766667889999999999999999999999874
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=5.7e-15 Score=159.48 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=60.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L 156 (701)
.|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+|||||++|+.||++.
T Consensus 4 ~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G 69 (372)
T PRK14296 4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFG 69 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhcc
Confidence 6999999999999999999999999987 8999864 456789999999999999999999999864
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.1e-14 Score=157.37 Aligned_cols=67 Identities=21% Similarity=0.243 Sum_probs=61.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
.|||+||||+++||.+|||+|||+++++ |||++..+..++++|+.|++||+||+||++|+.||++..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK 71 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence 5999999999999999999999999987 799987666678899999999999999999999998643
No 8
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.5e-14 Score=156.99 Aligned_cols=67 Identities=22% Similarity=0.385 Sum_probs=62.0
Q ss_pred CcCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhh
Q 005346 88 SIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQ 154 (701)
Q Consensus 88 ~iPlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~ 154 (701)
.+..|||+||||+++||.+|||+|||+++++ |||++.....++++|+.|++||+||+||.+|+.||+
T Consensus 6 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 6 YIEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 3567999999999999999999999999987 799987666678999999999999999999999998
No 9
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.7e-14 Score=155.51 Aligned_cols=68 Identities=24% Similarity=0.253 Sum_probs=62.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
..|||+||||+++||.+|||+|||+++++ |||++...+.++++|+.|++||+||+||.+|..||.+..
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~ 70 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGH 70 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence 46999999999999999999999999987 799987666778899999999999999999999998643
No 10
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.7e-14 Score=156.19 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=63.1
Q ss_pred CCcCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 87 VSIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 87 m~iPlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
|+.+.|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||.+|+.||++..
T Consensus 1 ~~~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (377)
T PRK14298 1 MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGH 71 (377)
T ss_pred CCCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence 56668999999999999999999999999987 7999764 4567899999999999999999999998754
No 11
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=2e-14 Score=155.90 Aligned_cols=69 Identities=22% Similarity=0.339 Sum_probs=63.0
Q ss_pred cCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 89 IPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 89 iPlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
...|||+||||+++||.+|||+|||+++++ |||++.+...++++|+.|++||+|||||.+|+.||.+..
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 72 (386)
T PRK14277 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGH 72 (386)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence 357999999999999999999999999987 799987666678899999999999999999999998753
No 12
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.2e-14 Score=152.96 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=61.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCC
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADD 159 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~e~ 159 (701)
...||+||||+++||.+|||||||+++++ |||++++ +.++|+.|.+||+|||||++|+.||++..+.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~ 70 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEG 70 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence 46899999999999999999999999998 7999887 5679999999999999999999999987553
No 13
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.8e-14 Score=153.83 Aligned_cols=68 Identities=22% Similarity=0.320 Sum_probs=61.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCCh-HHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSP-DALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~-eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
..|||+||||+++||.+|||+|||+++++ |||++... ..++++|+.|++||+||+||.+|+.||.+..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~ 72 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY 72 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence 36999999999999999999999999988 89997643 4578899999999999999999999998754
No 14
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.8e-14 Score=154.37 Aligned_cols=66 Identities=23% Similarity=0.334 Sum_probs=60.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L 156 (701)
..|||+||||+++||.+|||+|||+++++ |||++.+ +.++++|+.|++||+||+||++|+.||++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G 68 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGG 68 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence 46999999999999999999999999987 7999874 456789999999999999999999999864
No 15
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=3.2e-14 Score=154.51 Aligned_cols=67 Identities=24% Similarity=0.340 Sum_probs=62.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
.|||+||||+++||.+|||+|||+++++ |||++.+...++++|+.|++||+||+||++|+.||++..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 68 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGK 68 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence 4899999999999999999999999987 899988767788999999999999999999999998754
No 16
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=4e-14 Score=152.85 Aligned_cols=66 Identities=21% Similarity=0.344 Sum_probs=60.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
.|||+||||+++|+.+|||+|||+++++ |||++.+ +.++++|+.|++||+||+||++|+.||++..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~ 70 (371)
T PRK14287 4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH 70 (371)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence 6999999999999999999999999987 8999764 4567899999999999999999999998753
No 17
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.47 E-value=3.5e-14 Score=155.90 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=58.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
..|||+||||+++||.+|||||||+++++ |||++.+ .++|+.|++||+|||||++|+.||.+..
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 46999999999999999999999999987 8999753 3689999999999999999999998754
No 18
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=4.9e-14 Score=151.76 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=62.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
..|||+||||+++||.+|||+|||+++++ |||++.+.+.++++|+.|++||+||+||.+|+.||++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~ 71 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGH 71 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcc
Confidence 36999999999999999999999999987 799987666678899999999999999999999998754
No 19
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=4.8e-14 Score=152.70 Aligned_cols=67 Identities=21% Similarity=0.353 Sum_probs=60.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
..|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+|||||.+|+.||.+..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence 46999999999999999999999999987 7999865 4567899999999999999999999998754
No 20
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=4.6e-14 Score=152.70 Aligned_cols=67 Identities=21% Similarity=0.317 Sum_probs=62.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
.|||+||||+++|+.+|||+|||+++++ |||++.....++++|+.|++||+||+||.+|+.||++..
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~ 71 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT 71 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence 5999999999999999999999999987 799987666788999999999999999999999998753
No 21
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=5.8e-14 Score=147.03 Aligned_cols=67 Identities=22% Similarity=0.306 Sum_probs=60.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
..|||+||||+++||.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||.+|+.||.+..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 36999999999999999999999999987 8999764 4567899999999999999999999998754
No 22
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=5.2e-14 Score=152.10 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=62.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
..|||+||||+++||.+|||+|||+++++ |||++.+...++++|+.|++||+||+||.+|+.||.+..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~ 71 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH 71 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence 36999999999999999999999999987 799987666678899999999999999999999998754
No 23
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.46 E-value=5.4e-14 Score=114.82 Aligned_cols=62 Identities=21% Similarity=0.353 Sum_probs=56.7
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChH-HHHHHHHHHHHHHHHcCCchhhHHHh
Q 005346 92 DFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPD-ALISRRQILQAACETLANASSRREYN 153 (701)
Q Consensus 92 DyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~e-aa~~RfqlI~eAYeVLSDP~~R~~YD 153 (701)
|||+||||+++++.++||++|++++++ |||+..... .+..+|+.|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 689999999999999999999999987 799865544 67889999999999999999999998
No 24
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=5.8e-14 Score=152.84 Aligned_cols=68 Identities=26% Similarity=0.320 Sum_probs=62.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
..|||+||||+++|+.+|||+|||+++++ |||++.+...++++|+.|++||+||+||.+|+.||.+..
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 36999999999999999999999999987 899987666678899999999999999999999998754
No 25
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=6.5e-14 Score=151.44 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=61.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
..|||+||||+++||.+|||+|||+++++ |||++.+ ..++++|+.|++||+|||||.+|+.||++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence 56999999999999999999999999987 8999865 4578899999999999999999999999753
No 26
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=6.6e-14 Score=151.53 Aligned_cols=66 Identities=27% Similarity=0.381 Sum_probs=60.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
.|||+||||+++||.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||++|+.||++..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence 5999999999999999999999999987 7999865 3467899999999999999999999998753
No 27
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.1e-13 Score=149.22 Aligned_cols=68 Identities=24% Similarity=0.333 Sum_probs=62.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
..|||+||||+++||.+|||+|||+++++ |||++.....++++|+.|++||+||+||.+|+.||.+..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~ 71 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH 71 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccc
Confidence 46999999999999999999999999987 899987556678899999999999999999999998754
No 28
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1e-13 Score=149.36 Aligned_cols=68 Identities=22% Similarity=0.380 Sum_probs=61.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCCh-HHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSP-DALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~-eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
+.|||+||||+++||.+|||+|||+++++ |||++... +.++++|+.|++||+||+||.+|+.||.+..
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~ 71 (365)
T PRK14290 2 AKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT 71 (365)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence 47999999999999999999999999987 89997654 3678899999999999999999999998643
No 29
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.7e-13 Score=143.98 Aligned_cols=67 Identities=21% Similarity=0.318 Sum_probs=62.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCC
Q 005346 92 DFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADD 159 (701)
Q Consensus 92 DyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~e~ 159 (701)
|||+||||+++||..|||+||++|+++ |||.+.+. .+.++|+.|.+|||||+|+++|++||..+...
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 899999999999999999999999998 79988766 67889999999999999999999999998764
No 30
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.6e-13 Score=148.31 Aligned_cols=66 Identities=24% Similarity=0.353 Sum_probs=60.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
.|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+|||||.+|+.||++..
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 70 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGH 70 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence 5999999999999999999999999987 7999765 3467899999999999999999999998754
No 31
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.7e-13 Score=147.63 Aligned_cols=67 Identities=22% Similarity=0.326 Sum_probs=61.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
|.|||+||||+++||.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||.+|+.||.+..
T Consensus 1 ~~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~ 68 (371)
T PRK14292 1 MMDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDRFGT 68 (371)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhhcCC
Confidence 46999999999999999999999999987 8999864 4567899999999999999999999999754
No 32
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.5e-13 Score=148.37 Aligned_cols=70 Identities=24% Similarity=0.306 Sum_probs=62.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChH---HHHHHHHHHHHHHHHcCCchhhHHHhhcccCCC
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPD---ALISRRQILQAACETLANASSRREYNQGLADDH 160 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~e---aa~~RfqlI~eAYeVLSDP~~R~~YD~~L~e~~ 160 (701)
.|||.+|||+++||+||||+|||++++- |||+.-+++ .++..|++|++||||||||++|.+||....++-
T Consensus 9 ~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL 82 (546)
T KOG0718|consen 9 IELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGL 82 (546)
T ss_pred hhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccc
Confidence 4899999999999999999999999986 899987543 578889999999999999999999999877653
No 33
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=3.7e-13 Score=145.83 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=62.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
..|||+||||+++||.+|||+|||+++++ |||++.....++++|+.|++||++|+||.+|+.||.+..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~ 72 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH 72 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence 46999999999999999999999999987 899987666678899999999999999999999998754
No 34
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.4e-13 Score=138.72 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=62.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQG 155 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~ 155 (701)
-.|+|+|||++++|+.++||||||+++++ |||++.+++++..+|+.|++||++||||.+|..||..
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~ 96 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEY 96 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHh
Confidence 56899999999999999999999999986 8999888777889999999999999999999999987
No 35
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.39 E-value=3e-13 Score=144.69 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=59.2
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 92 DFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 92 DyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
|||+||||+++|+.+|||+|||+++++ |||++. ...++++|+.|++||+||+||.+|+.||.+..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~ 66 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGH 66 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence 799999999999999999999999987 799986 34467899999999999999999999998654
No 36
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=3.3e-13 Score=145.80 Aligned_cols=67 Identities=25% Similarity=0.357 Sum_probs=60.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
+.|||+||||+++||.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||.+|+.||.+..
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~ 69 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGE 69 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence 57999999999999999999999999987 8998764 3467899999999999999999999998653
No 37
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.39 E-value=4.6e-13 Score=156.43 Aligned_cols=69 Identities=17% Similarity=0.154 Sum_probs=62.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCC
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADD 159 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~e~ 159 (701)
..+||+||||+++||..+||+|||+++++ |||++.++ .+..+|+.|.+||+|||||.+|+.||.+...+
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 46999999999999999999999999987 89998765 46779999999999999999999999987664
No 38
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=3.1e-13 Score=145.97 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=59.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
.|||+||||+++||.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+|+.+|+.||.+..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 69 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFGH 69 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence 6999999999999999999999999987 7998753 3467799999999999999999999998643
No 39
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.8e-13 Score=146.90 Aligned_cols=66 Identities=24% Similarity=0.337 Sum_probs=60.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCC-ChHHHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGF-SPDALISRRQILQAACETLANASSRREYNQGL 156 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~-s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L 156 (701)
..||+||||.++|++++||++||+++++ |||+++ .-+.+.++|++|+.||+|||||+.|..||.+.
T Consensus 8 ~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hr 75 (508)
T KOG0717|consen 8 RCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHR 75 (508)
T ss_pred hHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHH
Confidence 4899999999999999999999999998 899965 45678999999999999999999999999764
No 40
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.35 E-value=7.3e-13 Score=139.57 Aligned_cols=65 Identities=25% Similarity=0.295 Sum_probs=59.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L 156 (701)
.|||+||||+++|+.+|||+|||+++++ |||++.+ ..++.+|+.|++||++|+||.+|+.||.+.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 5999999999999999999999999987 7999754 357889999999999999999999999864
No 41
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.31 E-value=3.4e-12 Score=102.45 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=52.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCC-hHHHHHHHHHHHHHHHHcCCchh
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFS-PDALISRRQILQAACETLANASS 148 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s-~eaa~~RfqlI~eAYeVLSDP~~ 148 (701)
.|||+||||+++++.++||++|++++++ |||++.. ......+|+.|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 3899999999999999999999999987 7999765 56678899999999999999853
No 42
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.5e-12 Score=120.46 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=62.0
Q ss_pred CcCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHH-HHHHHHHHHHHHHHcCCchhhHHHhhc
Q 005346 88 SIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDA-LISRRQILQAACETLANASSRREYNQG 155 (701)
Q Consensus 88 ~iPlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~ea-a~~RfqlI~eAYeVLSDP~~R~~YD~~ 155 (701)
..-.|||+||||+++|+.+|||+|||+++++ |||++..... ++.+|+.|++||++|+|+.+|..||..
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 3446999999999999999999999999998 7999876663 889999999999999999999999985
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.26 E-value=8.4e-12 Score=98.35 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=49.3
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCC
Q 005346 92 DFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLAN 145 (701)
Q Consensus 92 DyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSD 145 (701)
|||+||||+++++.++||++|++++++ |||++...+....+|+.|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999987 899976545678899999999999987
No 44
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.16 E-value=3.9e-11 Score=138.05 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=61.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCC
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADD 159 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~e~ 159 (701)
.|||+||||+++|+.++||+|||+++++ |||++.+ ..+..+|+.|++||++|+||.+|..||.+...+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 4899999999999999999999999987 7999766 456778999999999999999999999986543
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.5e-11 Score=122.72 Aligned_cols=67 Identities=25% Similarity=0.357 Sum_probs=60.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCC--hHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFS--PDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s--~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
.|.|+||||.++|+..+|+|||++++++ |||+++. ...+...|++|+.||+||||.++|+.||....
T Consensus 14 ~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 14 KDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred cCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 3899999999999999999999999987 7999853 33567789999999999999999999998764
No 46
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.13 E-value=8.6e-10 Score=108.26 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=56.7
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHhC-CCCCCCChH-----HHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 91 IDFYQALGAETH--FLGDGIRRAYEARISK-PPQYGFSPD-----ALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 91 lDyYeILGVs~~--As~eEIKkAYRklal~-hPDk~~s~e-----aa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
.|||+||||+++ ++..+|+++||++.++ |||+..+.. .+.+++..|++||++|+||.+|..|+-.+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 389999999997 5789999999999887 899854322 245678999999999999999999997665
No 47
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.13 E-value=1.3e-09 Score=107.64 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=57.2
Q ss_pred cCCCcccccCCCCC--CCHHHHHHHHHHHHhC-CCCCCCChHHHHHH-----HHHHHHHHHHcCCchhhHHHhhccc
Q 005346 89 IPIDFYQALGAETH--FLGDGIRRAYEARISK-PPQYGFSPDALISR-----RQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 89 iPlDyYeILGVs~~--As~eEIKkAYRklal~-hPDk~~s~eaa~~R-----fqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
.+.|||+||||+++ ++..+|+++||++.++ |||+..+....+++ +..|++||++|+||.+|..|.-.+.
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 34699999999996 5789999999999887 89986543333333 5899999999999999999998765
No 48
>PHA03102 Small T antigen; Reviewed
Probab=99.09 E-value=5.9e-11 Score=114.96 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=58.7
Q ss_pred CcccccCCCCCC--CHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCCCC
Q 005346 92 DFYQALGAETHF--LGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHA 161 (701)
Q Consensus 92 DyYeILGVs~~A--s~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~e~~~ 161 (701)
.+|+||||+++| |.++||+|||+++++ |||++.++ ++|+.|++||++|+|+.+|..||.......+
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~----e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~ 74 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDE----EKMKELNTLYKKFRESVKSLRDLDGEEDSSS 74 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchh----HHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence 579999999999 999999999999886 89997553 5899999999999999999999998766543
No 49
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.4e-10 Score=117.22 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=64.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCCCC
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHA 161 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~e~~~ 161 (701)
--|-|+|||+++.+|..|||||||+|+.+ |||+...++..++.|..|..||+.|+|++.|+.|..+...+.+
T Consensus 98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGp 170 (230)
T KOG0721|consen 98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGP 170 (230)
T ss_pred cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCc
Confidence 45889999999999999999999999988 7999877677788899999999999999999999998766553
No 50
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.05 E-value=3e-09 Score=104.90 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=57.4
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHhC-CCCCCCChH-----HHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 91 IDFYQALGAETHF--LGDGIRRAYEARISK-PPQYGFSPD-----ALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 91 lDyYeILGVs~~A--s~eEIKkAYRklal~-hPDk~~s~e-----aa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
.+||++||++++. +..+|+++||++.++ |||+..+.. .+..++..|++||+||+||.+|..|+-.+.
T Consensus 4 ~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 4 PCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 5899999999985 589999999999887 899864422 245678999999999999999999998875
No 51
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.6e-10 Score=125.11 Aligned_cols=70 Identities=21% Similarity=0.358 Sum_probs=63.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHh-CCCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCCC
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARIS-KPPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDH 160 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal-~hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~e~~ 160 (701)
..|+|.+|||++++++++|||.||+++. -||||+. .+.+++-|+.|+.||++|+|+++|++||..++...
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ken 304 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKEN 304 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 5799999999999999999999999976 4999987 66778889999999999999999999998876543
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.96 E-value=1e-09 Score=107.35 Aligned_cols=67 Identities=24% Similarity=0.210 Sum_probs=56.7
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHhC-CCCCCCChHH---HHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 91 IDFYQALGAETH--FLGDGIRRAYEARISK-PPQYGFSPDA---LISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 91 lDyYeILGVs~~--As~eEIKkAYRklal~-hPDk~~s~ea---a~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
.|||+||||+++ ++.++|+++||++.++ |||+..+... ....+..|++||+||+||.+|..|.-.+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 589999999997 6899999999999887 8999755322 23457799999999999999999987774
No 53
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.95 E-value=5.1e-10 Score=119.98 Aligned_cols=70 Identities=24% Similarity=0.314 Sum_probs=60.2
Q ss_pred CCcCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChH---HHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005346 87 VSIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPD---ALISRRQILQAACETLANASSRREYNQGL 156 (701)
Q Consensus 87 m~iPlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~e---aa~~RfqlI~eAYeVLSDP~~R~~YD~~L 156 (701)
..-..|||+||||.++|+..||.||||+++.+ |||.-.+.+ .++.+|.-|..|-+||+||++|+.||.+-
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 34567999999999999999999999999987 788533332 46888999999999999999999999864
No 54
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=8.4e-10 Score=110.34 Aligned_cols=68 Identities=25% Similarity=0.365 Sum_probs=60.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCCh-HHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSP-DALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~-eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
..|||.||||.++|+.+||++||++++++ |||++.+. ..++.+|++|.+||+||+|+.+|..||....
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46999999999999999999999999987 89997665 3344589999999999999999999998865
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.1e-09 Score=113.04 Aligned_cols=125 Identities=18% Similarity=0.265 Sum_probs=95.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCCCCCCccccC
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEV 168 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~e~~~~~~~lei 168 (701)
-.|||+||||+++++..||.||||+++++ |||++..++. ..+|..|..||++|.|.+.|..||-.+..
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~-k~~F~~iAtayeilkd~e~rt~ydyaldh---------- 100 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPES-KKLFVKIATAYEILKDNETRTQYDYALDH---------- 100 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchh-hhhhhhhhcccccccchhhHHhHHHHhcC----------
Confidence 35899999999999999999999999998 6999877664 47899999999999999999999977531
Q ss_pred CCccccchHHHHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHHHHH
Q 005346 169 PWDKVPGALLVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQE 248 (701)
Q Consensus 169 ~~~~~~GAL~LLqElGE~e~Vl~lg~~~Lq~~l~~~~~~Dv~Ls~ALA~~elarea~~q~~~~y~~aa~~Le~al~LLqr 248 (701)
.++++--.-++++..-....-.|++|..-|+-.. .++ |-++|..+.+|+.-..+
T Consensus 101 -----------------pd~~fynyyqyyr~r~apkvd~raviVGvl~i~s----~Fq-----yls~~ary~eAI~~~~~ 154 (329)
T KOG0722|consen 101 -----------------PDEVFYNYYQYYRARYAPKVDPRAVIVGVLVILS----AFQ-----YLSNVARYNEAIAYVKR 154 (329)
T ss_pred -----------------chHHHHHHHHHHHHHhccccCCcEEEEeehhhhh----HHH-----HHHHHHHHHHHHHHHhc
Confidence 1345555556666554444455666665555322 222 77889999999999887
Q ss_pred hCC
Q 005346 249 EGA 251 (701)
Q Consensus 249 ~G~ 251 (701)
.++
T Consensus 155 vpk 157 (329)
T KOG0722|consen 155 VPK 157 (329)
T ss_pred chh
Confidence 654
No 56
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.2e-09 Score=115.85 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=63.5
Q ss_pred CCCcCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCC-ChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 86 HVSIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGF-SPDALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 86 ~m~iPlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~-s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
.++--.|||.||||.++|+.+|||+|||++++. |||++. +...++.+|+.+.+||.+|+||.+|.+||..-.
T Consensus 368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d 441 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD 441 (486)
T ss_pred HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc
Confidence 344567999999999999999999999999987 699875 447789999999999999999999999997643
No 57
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.67 E-value=1.9e-08 Score=93.83 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=47.0
Q ss_pred CCCCCcCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcC
Q 005346 84 NRHVSIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLA 144 (701)
Q Consensus 84 ~~~m~iPlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLS 144 (701)
+..|.. .++|+||||++++|.+|||++||+++++ |||++.+++ .|+.|++||++|.
T Consensus 59 ~~~Ms~-~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~----~~~kIneAyevL~ 115 (116)
T PTZ00100 59 ENPMSK-SEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTY----IASKVNEAKDLLL 115 (116)
T ss_pred cCCCCH-HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHH----HHHHHHHHHHHHh
Confidence 445543 5899999999999999999999999886 799875543 5778999999985
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.64 E-value=2.4e-08 Score=104.31 Aligned_cols=55 Identities=29% Similarity=0.377 Sum_probs=48.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCC----Ch---HHHHHHHHHHHHHHHHcCC
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGF----SP---DALISRRQILQAACETLAN 145 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~----s~---eaa~~RfqlI~eAYeVLSD 145 (701)
.|+|+||||++++|.+|||+|||+++++ |||+.. ++ +.++++|+.|++||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999887 799842 22 3467899999999999975
No 59
>PHA02624 large T antigen; Provisional
Probab=98.53 E-value=6.3e-08 Score=110.77 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=53.3
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHH
Q 005346 91 IDFYQALGAETHF--LGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREY 152 (701)
Q Consensus 91 lDyYeILGVs~~A--s~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~~Y 152 (701)
.++|+||||+++| +.++||+|||+++++ |||++.+ .++|+.|++||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhc
Confidence 4799999999999 999999999999987 7999754 35799999999999999999999
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.39 E-value=4.8e-06 Score=82.48 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=55.8
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHhC-CCCCCCChHH-----HHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 91 IDFYQALGAETH--FLGDGIRRAYEARISK-PPQYGFSPDA-----LISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 91 lDyYeILGVs~~--As~eEIKkAYRklal~-hPDk~~s~ea-----a~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
.|||+++|++++ .+...+++.|+++.++ |||+..+... +.+.-..|++||.+|.||-+|..|=-.+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 489999999997 6899999999999887 8998543222 33456789999999999999999987776
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.25 E-value=1.2e-06 Score=96.75 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=60.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCC-----hHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCCC
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFS-----PDALISRRQILQAACETLANASSRREYNQGLADDH 160 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s-----~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~e~~ 160 (701)
-|.|+|||++.+++..+||++||++..+ ||||-.. .+..++....|..||+.|+|.+.|+.|-.+.-.+.
T Consensus 98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~ 173 (610)
T COG5407 98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS 173 (610)
T ss_pred CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence 5889999999999999999999999887 7998543 33567788999999999999999999987765444
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.13 E-value=4.2e-05 Score=74.54 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHhC-CCCCCCCh-----HHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005346 103 FLGDGIRRAYEARISK-PPQYGFSP-----DALISRRQILQAACETLANASSRREYNQGLA 157 (701)
Q Consensus 103 As~eEIKkAYRklal~-hPDk~~s~-----eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~ 157 (701)
-+..+|+++||++.++ |||+..+. ..+...+..|++||++|+||.+|..|.-.+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 3678999999999887 89974321 2356788999999999999999999998876
No 63
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=2.8e-05 Score=81.75 Aligned_cols=70 Identities=21% Similarity=0.280 Sum_probs=56.5
Q ss_pred CCcccccCCCC---CCCHHHHHHHHHHHHhC-CCCCCCC--hHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCCC
Q 005346 91 IDFYQALGAET---HFLGDGIRRAYEARISK-PPQYGFS--PDALISRRQILQAACETLANASSRREYNQGLADDH 160 (701)
Q Consensus 91 lDyYeILGVs~---~As~eEIKkAYRklal~-hPDk~~s--~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L~e~~ 160 (701)
.|+|-+||++. .+++.+|.+|.++.+.+ |||+... .-.-...|++|+.||+||+|+.+|..||.......
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~ad 118 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDAD 118 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccC
Confidence 68999999997 78999999999998776 7997410 01123569999999999999999999998765443
No 64
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=5.2e-05 Score=76.89 Aligned_cols=62 Identities=15% Similarity=0.234 Sum_probs=55.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCCh-HHHHHHHHHHHHHHHHcCCchhhHH
Q 005346 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSP-DALISRRQILQAACETLANASSRRE 151 (701)
Q Consensus 90 PlDyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~-eaa~~RfqlI~eAYeVLSDP~~R~~ 151 (701)
-++.|+||.|.|..+.++||+-||+++.- |||++.++ +.+..-|..|..||..|-|+..|..
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 35889999999999999999999999764 99999876 6677889999999999999986654
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=3.7e-05 Score=79.33 Aligned_cols=53 Identities=25% Similarity=0.355 Sum_probs=47.4
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHH-HcCC
Q 005346 92 DFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACE-TLAN 145 (701)
Q Consensus 92 DyYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYe-VLSD 145 (701)
.||+||||...|+.++++.||.+++++ |||.| +.++..+||..|.+||. ||+.
T Consensus 48 e~fril~v~e~~~adevr~af~~lakq~hpdsg-s~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSG-SEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHcCCCCC-CccccHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999998 79987 45566789999999997 8864
No 66
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0033 Score=58.46 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=41.4
Q ss_pred ccccCCCCCCCHHHHHHHHHHHH-hCCCCCCCChHHHHHHHHHHHHHHHHcCCc
Q 005346 94 YQALGAETHFLGDGIRRAYEARI-SKPPQYGFSPDALISRRQILQAACETLANA 146 (701)
Q Consensus 94 YeILGVs~~As~eEIKkAYRkla-l~hPDk~~s~eaa~~RfqlI~eAYeVLSDP 146 (701)
-.||||+++++.+-||.|+|+.. .+|||++-|+--+ ..|+||+++|...
T Consensus 59 ~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlA----sKINEAKdlLe~~ 108 (112)
T KOG0723|consen 59 ALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLA----SKINEAKDLLEGT 108 (112)
T ss_pred HHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHH----HHHHHHHHHHhcc
Confidence 56999999999999999999975 4699999988643 2589999999753
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.054 Score=65.94 Aligned_cols=50 Identities=20% Similarity=0.064 Sum_probs=41.4
Q ss_pred CcccccCCCCC----CCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcC
Q 005346 92 DFYQALGAETH----FLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLA 144 (701)
Q Consensus 92 DyYeILGVs~~----As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLS 144 (701)
+-|+||.|+-+ -..+.|||+|+|++.+ ||||++. -.+.|..++.|||.|+
T Consensus 1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHH
Confidence 46999999863 3457799999999987 7999753 3467999999999999
No 68
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.47 E-value=0.21 Score=49.40 Aligned_cols=53 Identities=28% Similarity=0.386 Sum_probs=42.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCC----CC---hHHHHHHHHHHHHHHHHc
Q 005346 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYG----FS---PDALISRRQILQAACETL 143 (701)
Q Consensus 91 lDyYeILGVs~~As~eEIKkAYRklal~-hPDk~----~s---~eaa~~RfqlI~eAYeVL 143 (701)
.+-|.+|||..++..++|+++|+++... |||+- -. .+.+..+++.|++||+..
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999875 68852 11 235677888999999753
No 69
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=87.79 E-value=0.8 Score=45.65 Aligned_cols=72 Identities=24% Similarity=0.354 Sum_probs=47.5
Q ss_pred CCCcCCCcccccCCCCCC--CHHHHHHHHHHHHhC-CCCC------CCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005346 86 HVSIPIDFYQALGAETHF--LGDGIRRAYEARISK-PPQY------GFSPDALISRRQILQAACETLANASSRREYNQGL 156 (701)
Q Consensus 86 ~m~iPlDyYeILGVs~~A--s~eEIKkAYRklal~-hPDk------~~s~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~L 156 (701)
.|..|.+||.+.|..... .++-++--|-...++ |||+ +... .+...-..|++||.+|.||-+|+.|=-.+
T Consensus 3 ~~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d-~a~eqSa~lnkAY~TLk~pL~RA~Yilkl 81 (168)
T KOG3192|consen 3 KMGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTD-QASEQSAELNKAYDTLKDPLARARYLLKL 81 (168)
T ss_pred ccchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccch-hHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 466788999999877654 333344244433333 4553 3222 33444567999999999999999998777
Q ss_pred cC
Q 005346 157 AD 158 (701)
Q Consensus 157 ~e 158 (701)
+-
T Consensus 82 ~g 83 (168)
T KOG3192|consen 82 KG 83 (168)
T ss_pred hC
Confidence 54
No 70
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=85.61 E-value=1.1 Score=51.05 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=33.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhC-CCCCC----CChH---HHHHHHHHHHHHHHHcC
Q 005346 98 GAETHFLGDGIRRAYEARISK-PPQYG----FSPD---ALISRRQILQAACETLA 144 (701)
Q Consensus 98 GVs~~As~eEIKkAYRklal~-hPDk~----~s~e---aa~~RfqlI~eAYeVLS 144 (701)
++.-=.+.++|||+|||..+. ||||- ++.. .++.-|.++++||....
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 344457999999999999987 99973 3432 23555777888876543
No 71
>PF13446 RPT: A repeated domain in UCH-protein
Probab=82.09 E-value=2.2 Score=35.38 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=26.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhCCCC
Q 005346 92 DFYQALGAETHFLGDGIRRAYEARISKPPQ 121 (701)
Q Consensus 92 DyYeILGVs~~As~eEIKkAYRklal~hPD 121 (701)
+-|++|||+++.+++.|..+|+.+....|+
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~~~P~ 35 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVNDDPS 35 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHHcChH
Confidence 459999999999999999999999886554
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=74.47 E-value=4 Score=39.31 Aligned_cols=48 Identities=25% Similarity=0.201 Sum_probs=32.0
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcC
Q 005346 93 FYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLA 144 (701)
Q Consensus 93 yYeILGVs~~As~eEIKkAYRklal~-hPDk~~s~eaa~~RfqlI~eAYeVLS 144 (701)
-.+||||++..+.++|.+-|.++-.. .|++|.|.- +.. .|-.|.+.|-
T Consensus 60 A~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfY-LQS---KV~rAKErl~ 108 (127)
T PF03656_consen 60 ARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFY-LQS---KVFRAKERLE 108 (127)
T ss_dssp HHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HH-HHH---HHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHH-HHH---HHHHHHHHHH
Confidence 57999999999999999999999775 599887743 222 3566666664
No 73
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=66.38 E-value=10 Score=37.60 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=49.9
Q ss_pred CcccccCCCCCCC--HHHHHHHHHHHHhC-CCCCCCChHH-----HHHHHHHHHHHHHHcCCchhhHHHhhcccCCC
Q 005346 92 DFYQALGAETHFL--GDGIRRAYEARISK-PPQYGFSPDA-----LISRRQILQAACETLANASSRREYNQGLADDH 160 (701)
Q Consensus 92 DyYeILGVs~~As--~eEIKkAYRklal~-hPDk~~s~ea-----a~~RfqlI~eAYeVLSDP~~R~~YD~~L~e~~ 160 (701)
||+...|.++.+. -+.++.-|+.+... |||+..+... ...++..++.||.+|.||-+|..|-..+..+.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~ 78 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGL 78 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccc
Confidence 4556666666653 44577788888765 7997654332 34578889999999999999999988776443
No 74
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=65.67 E-value=13 Score=29.72 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhcc
Q 005346 372 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGL 430 (701)
Q Consensus 372 I~~A~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~avC~LLLGq~eeA~~~L~l 430 (701)
..+|..+|+++-+. .....++.+..+.|++-.|+.++|...|..
T Consensus 7 ~~~A~~~~~~~l~~---------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 7 YDEAIELLEKALQR---------------NPDNPEARLLLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp HHHHHHHHHHHHHH---------------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45788888887654 123479999999999999999999999953
No 75
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=65.32 E-value=26 Score=28.93 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=42.6
Q ss_pred HHHHhhhHHHHHHHHHHHhhh--cCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHHHHH
Q 005346 179 VLQEAGETEVVLRIGESLLRE--RLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQE 248 (701)
Q Consensus 179 LLqElGE~e~Vl~lg~~~Lq~--~l~~~~~~Dv~Ls~ALA~~elarea~~q~~~~y~~aa~~Le~al~LLqr 248 (701)
++++.|++++++++-++.|+- ..+. ...+ +|.++..+|.-.... .+|+.|.+.+++++++.+.
T Consensus 14 ~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~----~a~~~~~lg~~~~~~--g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 14 VYRELGRYDEALDYYEKALDIEEQLGD-DHPD----TANTLNNLGECYYRL--GDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHH----HHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHH----HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhhcC
Confidence 678999999999999999963 2232 1222 244455555444444 3699999999999998763
No 76
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=56.70 E-value=14 Score=37.92 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCCchhhH
Q 005346 100 ETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANASSRR 150 (701)
Q Consensus 100 s~~As~eEIKkAYRklal~hPDk~~s~eaa~~RfqlI~eAYeVLSDP~~R~ 150 (701)
+++|+-|||++|+.++..+|-++ + .....|..|||.+.=...|.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd----~---~~~~~IEaAYD~ILM~rL~~ 44 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD----E---KSREAIEAAYDAILMERLRQ 44 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC----H---HHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999998887332 1 23456889998665544443
No 77
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=54.97 E-value=32 Score=27.39 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005346 372 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (701)
Q Consensus 372 I~~A~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~avC~LLLGq~eeA~~~L~ 429 (701)
..+|...|+++.+. .....+..+.+|.|.+-.|++++|..++.
T Consensus 13 ~~~A~~~~~~~l~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 13 YDEAIAAFEQALKQ---------------DPDNPEAWYLLGRILYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHHHHHHHCC---------------STTHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 57899999999865 13357999999999999999999999884
No 78
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=49.34 E-value=25 Score=24.07 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHhhCChHHHHHHhc
Q 005346 406 EFALERGLCSLLVGKLDECRLWLG 429 (701)
Q Consensus 406 Dv~lE~avC~LLLGq~eeA~~~L~ 429 (701)
|..+..|.|+..+|+.++|...++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~ 24 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQ 24 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHH
Confidence 456788999999999999999974
No 79
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=46.89 E-value=2.2e+02 Score=30.27 Aligned_cols=52 Identities=10% Similarity=0.088 Sum_probs=32.4
Q ss_pred HhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHH
Q 005346 182 EAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERA 242 (701)
Q Consensus 182 ElGE~e~Vl~lg~~~Lq~~l~~~~~~Dv~Ls~ALA~~elarea~~q~~~~y~~aa~~Le~a 242 (701)
..|+++..++.-+.++.....++...|..+-++..+.+ . .++..|+..+++.
T Consensus 192 ~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-------~--g~~~~A~~~~~~v 243 (263)
T PRK10803 192 NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-------K--GDTAKAKAVYQQV 243 (263)
T ss_pred HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-------c--CCHHHHHHHHHHH
Confidence 34666666666667776555566677777776666532 2 2466777776643
No 80
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=40.87 E-value=4.8e+02 Score=33.27 Aligned_cols=45 Identities=9% Similarity=-0.091 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005346 370 HLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (701)
Q Consensus 370 ~lI~~A~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~avC~LLLGq~eeA~~~L~ 429 (701)
.-..+|...|++..+. .....+++...|.|++-.|+.++|...|.
T Consensus 283 g~~~~A~~~l~~aL~~---------------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 283 GQGGKAIPELQQAVRA---------------NPKDSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred CCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456888888877653 11225888999999999999999998874
No 81
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=38.81 E-value=1.4e+02 Score=23.86 Aligned_cols=56 Identities=25% Similarity=0.379 Sum_probs=40.3
Q ss_pred HHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHH
Q 005346 179 VLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKL 245 (701)
Q Consensus 179 LLqElGE~e~Vl~lg~~~Lq~~l~~~~~~Dv~Ls~ALA~~elarea~~q~~~~y~~aa~~Le~al~L 245 (701)
.+.+.|+++.+++.=+++++-. +...++...++++|...+ .++..|...+++++++
T Consensus 12 ~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~--------~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 12 IYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLG--------KDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTT--------THHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhC--------ccHHHHHHHHHHHHHc
Confidence 4567899999999888888732 334667777777765543 1477888888888875
No 82
>TIGR02267 Myxococcus xanthus paralogous family TIGR02267. This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=35.17 E-value=12 Score=35.89 Aligned_cols=28 Identities=36% Similarity=0.444 Sum_probs=25.7
Q ss_pred CCChhHHHHHHHHHhhhccCCCCCCCCC
Q 005346 455 DNDLPGLCKLLETWLAEVVFPRFRDTSD 482 (701)
Q Consensus 455 ~~DLpGLC~y~E~WL~~~VfP~FRDt~~ 482 (701)
.+|+-|-|...+.||.-+|.|+||+...
T Consensus 89 aGDldgARq~m~dvLAVEVVP~YR~~Ae 116 (123)
T TIGR02267 89 AGDLDGARALLLDVLAVEVVPFYRELAQ 116 (123)
T ss_pred ccChHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4899999999999999999999998764
No 83
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=31.20 E-value=5.3e+02 Score=25.77 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=49.7
Q ss_pred HHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHHHHHhCCCCCCh
Q 005346 181 QEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAP 256 (701)
Q Consensus 181 qElGE~e~Vl~lg~~~Lq~~l~~~~~~Dv~Ls~ALA~~elarea~~q~~~~y~~aa~~Le~al~LLqr~G~~~l~p 256 (701)
...|++..++...+.+++.....+...++..-+++++....+..+ ...++....-..+..-..++++...+...+
T Consensus 53 y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~-~~~~D~~~~~~A~~~~~~li~~yP~S~y~~ 127 (203)
T PF13525_consen 53 YKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL-RSDRDQTSTRKAIEEFEELIKRYPNSEYAE 127 (203)
T ss_dssp HHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH--TT---HHHHHHHHHHHHHHHH-TTSTTHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch-hcccChHHHHHHHHHHHHHHHHCcCchHHH
Confidence 456889999999999998777777889999999999988876664 223555555566666667777765433333
No 84
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=29.53 E-value=1.3e+03 Score=29.51 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=16.4
Q ss_pred HhhHHHHHcCCCchhhHhHHHHHHHHH
Q 005346 219 DISRDAMAFNPPDYIGGCEMLERALKL 245 (701)
Q Consensus 219 elarea~~q~~~~y~~aa~~Le~al~L 245 (701)
.++...+.++ +++.|.+.+++++++
T Consensus 466 ~~a~~~~~~g--~~~eA~~~~~~Al~~ 490 (1157)
T PRK11447 466 QQAEALENQG--KWAQAAELQRQRLAL 490 (1157)
T ss_pred HHHHHHHHCC--CHHHHHHHHHHHHHh
Confidence 3444444443 588888888888764
No 85
>PF09543 DUF2379: Protein of unknown function (DUF2379); InterPro: IPR011753 This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=29.15 E-value=19 Score=34.72 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=25.7
Q ss_pred CCChhHHHHHHHHHhhhccCCCCCCCCC
Q 005346 455 DNDLPGLCKLLETWLAEVVFPRFRDTSD 482 (701)
Q Consensus 455 ~~DLpGLC~y~E~WL~~~VfP~FRDt~~ 482 (701)
.+|+-|-|.-.+.||.-+|.|+||++..
T Consensus 87 aGD~dgARq~m~dvLAVEvVP~YR~~Ae 114 (121)
T PF09543_consen 87 AGDLDGARQEMRDVLAVEVVPHYREIAE 114 (121)
T ss_pred ccCHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 4889999999999999999999999764
No 86
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=28.63 E-value=1.9e+02 Score=27.34 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=38.1
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHH
Q 005346 178 LVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERAL 243 (701)
Q Consensus 178 ~LLqElGE~e~Vl~lg~~~Lq~~l~~~~~~Dv~Ls~ALA~~elarea~~q~~~~y~~aa~~Le~al 243 (701)
+.+..+|+.++.+.+-++.|...+....+....+-.+-++..++ +++.|..+|++++
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG---------~~deA~~~L~~~~ 65 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG---------RYDEALALLEEAL 65 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHH
Confidence 34556788888888888888776666666666666655554433 3667777777664
No 87
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.59 E-value=1.4e+02 Score=32.91 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhcc
Q 005346 372 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGL 430 (701)
Q Consensus 372 I~~A~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~avC~LLLGq~eeA~~~L~l 430 (701)
|++|--+++.+.+- ...-.++-..++||++.+|+.+||+..|+.
T Consensus 189 ~qdAfyifeE~s~k---------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK---------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred hhhHHHHHHHHhcc---------------cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999862 012256777899999999999999999853
No 88
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=27.37 E-value=1.2e+03 Score=28.37 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005346 372 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (701)
Q Consensus 372 I~~A~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~avC~LLLGq~eeA~~~L~ 429 (701)
..+|...|++.... .....++.+.+|.+++=+|+.++|+..+.
T Consensus 409 ~~~A~~~l~~al~l---------------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 409 PRAAENELKKAEVL---------------EPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHHHHHHHHhh---------------CCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 47888888877653 12235788999999999999999999883
No 89
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=27.19 E-value=1e+03 Score=27.46 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHhhCChHHHHHHh
Q 005346 406 EFALERGLCSLLVGKLDECRLWL 428 (701)
Q Consensus 406 Dv~lE~avC~LLLGq~eeA~~~L 428 (701)
+....++.+++..|+.++|...+
T Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~ 284 (899)
T TIGR02917 262 LAHYLKALVDFQKKNYEDARETL 284 (899)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHH
Confidence 44455566666666666666555
No 90
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=26.97 E-value=1.3e+03 Score=29.00 Aligned_cols=125 Identities=22% Similarity=0.177 Sum_probs=76.2
Q ss_pred chHHHHHHhhhHHHHHHHHHHHhhhcC--CCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHHHHHh---
Q 005346 175 GALLVLQEAGETEVVLRIGESLLRERL--PKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEE--- 249 (701)
Q Consensus 175 GAL~LLqElGE~e~Vl~lg~~~Lq~~l--~~~~~~Dv~Ls~ALA~~elarea~~q~~~~y~~aa~~Le~al~LLqr~--- 249 (701)
++=.....++-+++.++++.+++.... ...+..=.-+..+++|--.++++=-.+.+ -....++++.|++.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR-----~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSER-----DALHKKSLQALEEAVQF 473 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHH-----HHHHHHHHHHHHHHHhc
Confidence 333345688889999999999997432 22334445677788886666554222211 11234444444442
Q ss_pred CCCC--------CChHHHHHHHHHhHhhChhhH---------HHhhCCCCChhhHHHHHHHHHHHHHHHHHhcC
Q 005346 250 GASS--------LAPDLQAQIDETLEEINPRCV---------LELLGLPLSGEYQARREEGLHGMLNILWAVGG 306 (701)
Q Consensus 250 G~~~--------l~p~Lq~eIe~~L~eL~Pyri---------LELLalPL~~e~~~~Rq~GL~lLr~lL~~rgg 306 (701)
+..+ +.-.+|++|..++...+-+-- +-||++=++. ..+-+.|+.++.+.|.+-|.
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa--~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSA--QKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHhhh
Confidence 1111 335788999999886654332 2457776755 34778889999999988753
No 91
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=26.59 E-value=3.2e+02 Score=21.54 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=36.9
Q ss_pred HHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHH
Q 005346 179 VLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKL 245 (701)
Q Consensus 179 LLqElGE~e~Vl~lg~~~Lq~~l~~~~~~Dv~Ls~ALA~~elarea~~q~~~~y~~aa~~Le~al~L 245 (701)
.+.+.|+++..++.-+++++.. +...++.+..+. -.+.++ +|..|...+++++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg~-------~~~~~g--~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD---PDNPEAWYLLGR-------ILYQQG--RYDEALAYYERALEL 60 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS---TTHHHHHHHHHH-------HHHHTT---HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHH-------HHHHcC--CHHHHHHHHHHHHHH
Confidence 5678999999999999999743 333444443333 334453 588888888888753
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=24.21 E-value=1.2e+02 Score=28.74 Aligned_cols=48 Identities=10% Similarity=-0.018 Sum_probs=36.3
Q ss_pred CCCchHHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005346 367 KQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (701)
Q Consensus 367 rkP~lI~~A~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~avC~LLLGq~eeA~~~L~ 429 (701)
.+=....+|...|+++... .....+++..+|.|...+|++++|...++
T Consensus 35 ~~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~ 82 (144)
T PRK15359 35 WQEGDYSRAVIDFSWLVMA---------------QPWSWRAHIALAGTWMMLKEYTTAINFYG 82 (144)
T ss_pred HHcCCHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3334567888888888754 12236888999999999999999999884
No 93
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=23.92 E-value=1.9e+02 Score=30.68 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=28.8
Q ss_pred CchhhHhHHHHHHHHHHHHhCCCCCChHHHHHHHHHhHh
Q 005346 230 PDYIGGCEMLERALKLLQEEGASSLAPDLQAQIDETLEE 268 (701)
Q Consensus 230 ~~y~~aa~~Le~al~LLqr~G~~~l~p~Lq~eIe~~L~e 268 (701)
.+|..|.++|-.|..+|-+.|+...+-+|-.-+-+.|++
T Consensus 4 kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~ 42 (260)
T PF04190_consen 4 KKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEK 42 (260)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHH
Confidence 359999999999999998988755566666666666665
No 94
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=23.79 E-value=1.6e+02 Score=20.21 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=21.8
Q ss_pred HHhhHhhHHHHHcCCCchhhHhHHHHHHHHH
Q 005346 215 LAYVDISRDAMAFNPPDYIGGCEMLERALKL 245 (701)
Q Consensus 215 LA~~elarea~~q~~~~y~~aa~~Le~al~L 245 (701)
-++..+|.-.+..+ +|.+|.+.+++++++
T Consensus 2 ~~~~~lg~~~~~~~--~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLG--NYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 35566677777775 599999999999876
No 95
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=23.64 E-value=99 Score=21.28 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=18.8
Q ss_pred hHHHHHHHHhhCChHHHHHHhc
Q 005346 408 ALERGLCSLLVGKLDECRLWLG 429 (701)
Q Consensus 408 ~lE~avC~LLLGq~eeA~~~L~ 429 (701)
.+..|-.++..|+.++|+.++.
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4567888999999999999874
No 96
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=23.63 E-value=1.6e+02 Score=23.76 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=23.2
Q ss_pred hhhhhHHHHHHHHhhCChHHHHHHhc
Q 005346 404 EMEFALERGLCSLLVGKLDECRLWLG 429 (701)
Q Consensus 404 ~~Dv~lE~avC~LLLGq~eeA~~~L~ 429 (701)
...+...+|.|..-+|+.++|...|.
T Consensus 28 ~~~~~~~~a~~~~~~g~~~~A~~~l~ 53 (73)
T PF13371_consen 28 DPELWLQRARCLFQLGRYEEALEDLE 53 (73)
T ss_pred cchhhHHHHHHHHHhccHHHHHHHHH
Confidence 35788899999999999999999984
No 97
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=22.10 E-value=85 Score=33.93 Aligned_cols=54 Identities=19% Similarity=0.083 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHhCC-CCCCCC----hHHHHHHHHHHHHHHHHcCCchhhHHHhhc
Q 005346 102 HFLGDGIRRAYEARISKP-PQYGFS----PDALISRRQILQAACETLANASSRREYNQG 155 (701)
Q Consensus 102 ~As~eEIKkAYRklal~h-PDk~~s----~eaa~~RfqlI~eAYeVLSDP~~R~~YD~~ 155 (701)
-++..+|+.+|+.....| |+.... ....++-++.|..||++|.+..+|..+|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 367889999999998875 775421 113456689999999999996666555544
No 98
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=22.00 E-value=1.9e+02 Score=28.92 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005346 350 FEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (701)
Q Consensus 350 ~~~YlaalAliA~GFa~rkP~lI~~A~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~avC~LLLGq~eeA~~~L~ 429 (701)
.+.|..+..++..| --.+|...|+.|... . |......+..+..|-|++-.|+.++|...+
T Consensus 6 ~~lY~~a~~~~~~g-------~y~~Ai~~f~~l~~~----~--------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~- 65 (203)
T PF13525_consen 6 EALYQKALEALQQG-------DYEEAIKLFEKLIDR----Y--------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAY- 65 (203)
T ss_dssp HHHHHHHHHHHHCT--------HHHHHHHHHHHHHH-------------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHH-
T ss_pred HHHHHHHHHHHHCC-------CHHHHHHHHHHHHHH----C--------CCChHHHHHHHHHHHHHHHcCCHHHHHHHH-
Confidence 45777777777665 256899999999865 1 223445788999999999999999999886
Q ss_pred cCCCCCCCCChHHHHHHHhhCC
Q 005346 430 LDSDKSPYRNPAIVDFVLENSK 451 (701)
Q Consensus 430 l~~~~sp~~d~~~~~fI~~~S~ 451 (701)
..||..|+.
T Consensus 66 -------------~~fi~~yP~ 74 (203)
T PF13525_consen 66 -------------ERFIKLYPN 74 (203)
T ss_dssp -------------HHHHHH-TT
T ss_pred -------------HHHHHHCCC
Confidence 578999885
No 99
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=21.84 E-value=4.8e+02 Score=23.26 Aligned_cols=75 Identities=15% Similarity=0.074 Sum_probs=48.9
Q ss_pred HHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHHHHHhCCCCCChHH
Q 005346 179 VLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDL 258 (701)
Q Consensus 179 LLqElGE~e~Vl~lg~~~Lq~~l~~~~~~Dv~Ls~ALA~~elarea~~q~~~~y~~aa~~Le~al~LLqr~G~~~l~p~L 258 (701)
++...|++..++++-++++... +...++....|..| +.. .++..|...+++++++-... ..+..+
T Consensus 60 ~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~-------~~~--g~~~~A~~~~~~al~~~p~~---~~~~~~ 124 (135)
T TIGR02552 60 CCQMLKEYEEAIDAYALAAALD---PDDPRPYFHAAECL-------LAL--GEPESALKALDLAIEICGEN---PEYSEL 124 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCChHHHHHHHHHH-------HHc--CCHHHHHHHHHHHHHhcccc---chHHHH
Confidence 4456788988888777777632 22344444444433 223 35899999999999886544 346677
Q ss_pred HHHHHHHhHh
Q 005346 259 QAQIDETLEE 268 (701)
Q Consensus 259 q~eIe~~L~e 268 (701)
...+...|+-
T Consensus 125 ~~~~~~~~~~ 134 (135)
T TIGR02552 125 KERAEAMLES 134 (135)
T ss_pred HHHHHHHHhc
Confidence 7777777664
No 100
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=21.26 E-value=3.8e+02 Score=22.82 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=40.1
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHH
Q 005346 178 LVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKL 245 (701)
Q Consensus 178 ~LLqElGE~e~Vl~lg~~~Lq~~l~~~~~~Dv~Ls~ALA~~elarea~~q~~~~y~~aa~~Le~al~L 245 (701)
.++.+.|+++.++++-+.++..........++.+.++.++.. . .++..|...+++.++.
T Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-------~--~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 47 EAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-------L--GDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH-------h--CChHHHHHHHHHHHHH
Confidence 357788999999999999887544444556777777766532 2 2466777777766654
No 101
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=21.24 E-value=2.5e+02 Score=30.85 Aligned_cols=57 Identities=11% Similarity=-0.046 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005346 351 EAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (701)
Q Consensus 351 ~~YlaalAliA~GFa~rkP~lI~~A~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~avC~LLLGq~eeA~~~L~ 429 (701)
..|.-+.+|+..| -..+|...++++... . ......++-+|+|++-+|+.++|...+.
T Consensus 38 a~~~~a~~~~~~g-------~~~eAl~~~~~Al~l----~-----------P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 38 LYADRAQANIKLG-------NFTEAVADANKAIEL----D-----------PSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred HHHHHHHHHHHcC-------CHHHHHHHHHHHHHh----C-----------cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3455566666553 456677777766543 0 1125678899999999999999999984
No 102
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.14 E-value=36 Score=36.75 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=51.6
Q ss_pred HHHHHhhCChHHHHHHhccCCCCCCCCChHHHHHHHhhCCCCCCCCh-hHHHHHH-------HHHhh--hccCCCCCCCC
Q 005346 412 GLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDL-PGLCKLL-------ETWLA--EVVFPRFRDTS 481 (701)
Q Consensus 412 avC~LLLGq~eeA~~~L~l~~~~sp~~d~~~~~fI~~~S~~~~~~DL-pGLC~y~-------E~WL~--~~VfP~FRDt~ 481 (701)
|--+-+|||.++|...++.---+| -+..++.|-.. +--| .|||.+| .+=|+ ++.+|.|-|++
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s--~~n~LLKys~K------dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSS--LDNNLLKYSAK------DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHhHHH------HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 334567888888888864321111 23345544332 1234 9999999 33333 57899999999
Q ss_pred CCCC--CcccccCChhHHHHHHh
Q 005346 482 DIRF--KLGDYYDDPTVLRYLER 502 (701)
Q Consensus 482 ~~~~--sL~~yFaD~~Vq~YLe~ 502 (701)
.+.+ +|-+=-+..++..|-|.
T Consensus 233 Eckflk~L~~aieE~d~e~fte~ 255 (288)
T KOG1586|consen 233 ECKFLKDLLDAIEEQDIEKFTEV 255 (288)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Confidence 9874 56666666666666554
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=20.79 E-value=1.6e+02 Score=27.85 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005346 370 HLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (701)
Q Consensus 370 ~lI~~A~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~avC~LLLGq~eeA~~~L~ 429 (701)
....+|...+++.... .....+.++-.|+|..-+|+.++|...+.
T Consensus 72 g~~~~A~~~y~~Al~l---------------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~ 116 (144)
T PRK15359 72 KEYTTAINFYGHALML---------------DASHPEPVYQTGVCLKMMGEPGLAREAFQ 116 (144)
T ss_pred hhHHHHHHHHHHHHhc---------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566788888877653 12236899999999999999999999984
No 104
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=20.27 E-value=4.3e+02 Score=23.56 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005346 372 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (701)
Q Consensus 372 I~~A~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~avC~LLLGq~eeA~~~L~ 429 (701)
..+|..++++.... .....+++..+|.|+..+|+.++|..++.
T Consensus 67 ~~~A~~~~~~~~~~---------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 67 YEEAIDAYALAAAL---------------DPDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred HHHHHHHHHHHHhc---------------CCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46788888877643 12236889999999999999999999984
No 105
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=20.17 E-value=2.1e+02 Score=22.82 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=35.5
Q ss_pred CchHHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhC-ChHHHHHHhc
Q 005346 369 PHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVG-KLDECRLWLG 429 (701)
Q Consensus 369 P~lI~~A~~ll~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~avC~LLLG-q~eeA~~~L~ 429 (701)
=.-..+|...|.+..+. .....++...+|.|+.-+| +.++|...+.
T Consensus 16 ~~~~~~A~~~~~~ai~~---------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIEL---------------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp TTHHHHHHHHHHHHHHH---------------STTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc---------------CCCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 34567888888877654 1334689999999999999 7999998874
Done!