Query 005347
Match_columns 701
No_of_seqs 348 out of 2532
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 22:01:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2195 Transferrin receptor a 100.0 1E-100 2E-105 868.9 54.3 637 30-697 46-700 (702)
2 cd02121 PA_GCPII_like PA_GCPII 100.0 8E-42 1.7E-46 340.4 20.7 203 95-307 3-209 (220)
3 cd02128 PA_TfR PA_TfR: Proteas 100.0 4.1E-37 8.8E-42 296.6 16.1 164 132-314 18-182 (183)
4 cd02131 PA_hNAALADL2_like PA_h 100.0 6.4E-36 1.4E-40 275.7 13.4 136 130-285 2-138 (153)
5 PF04389 Peptidase_M28: Peptid 100.0 4E-28 8.6E-33 238.7 14.0 164 339-516 1-174 (179)
6 PF04253 TFR_dimer: Transferri 99.9 4E-27 8.7E-32 217.8 9.1 124 573-699 2-125 (125)
7 COG4882 Predicted aminopeptida 99.9 2E-24 4.4E-29 220.8 23.9 328 45-516 3-345 (486)
8 PRK10199 alkaline phosphatase 99.9 2.9E-24 6.3E-29 227.6 19.5 202 323-544 96-345 (346)
9 KOG2194 Aminopeptidases of the 99.8 2.4E-20 5.2E-25 212.6 14.8 226 319-565 123-356 (834)
10 COG2234 Iap Predicted aminopep 99.8 5.4E-18 1.2E-22 189.9 16.2 168 324-514 195-374 (435)
11 cd04819 PA_2 PA_2: Protease-as 99.6 1.8E-14 3.9E-19 133.6 11.0 104 134-286 14-119 (127)
12 PF09940 DUF2172: Domain of un 99.6 2.3E-14 5E-19 150.6 12.8 177 310-516 103-287 (386)
13 PF05450 Nicastrin: Nicastrin; 99.5 1.5E-12 3.2E-17 132.6 16.3 167 339-516 1-199 (234)
14 KOG3946 Glutaminyl cyclase [Po 99.4 5.5E-12 1.2E-16 126.6 15.3 223 263-516 61-317 (338)
15 cd04820 PA_M28_1_1 PA_M28_1_1: 99.3 1.9E-12 4.1E-17 120.3 7.8 78 129-206 8-98 (137)
16 cd04816 PA_SaNapH_like PA_SaNa 99.3 1.1E-11 2.5E-16 114.1 11.3 108 133-286 7-114 (122)
17 cd02130 PA_ScAPY_like PA_ScAPY 99.3 2.5E-11 5.4E-16 111.9 11.5 101 133-286 12-114 (122)
18 cd04817 PA_VapT_like PA_VapT_l 99.2 3.4E-11 7.4E-16 112.4 10.4 102 134-286 27-133 (139)
19 cd04822 PA_M28_1_3 PA_M28_1_3: 99.2 1.8E-11 4E-16 115.7 8.0 72 135-206 12-102 (151)
20 cd02133 PA_C5a_like PA_C5a_lik 99.1 1.8E-10 3.9E-15 109.2 9.7 93 138-285 21-113 (143)
21 cd04814 PA_M28_1 PA_M28_1: Pro 99.1 9.6E-11 2.1E-15 109.6 7.5 65 135-204 12-100 (142)
22 cd04815 PA_M28_2 PA_M28_2: Pro 99.1 6.8E-10 1.5E-14 103.9 11.3 105 134-286 8-126 (134)
23 PF02225 PA: PA domain; Inter 99.0 4.1E-10 8.9E-15 99.8 6.6 64 138-201 1-65 (101)
24 KOG2526 Predicted aminopeptida 99.0 1.3E-09 2.8E-14 115.2 10.6 117 320-436 189-321 (555)
25 cd04821 PA_M28_1_2 PA_M28_1_2: 98.9 3.4E-09 7.3E-14 101.1 8.2 58 142-204 21-103 (157)
26 cd00538 PA PA: Protease-associ 98.9 6.6E-09 1.4E-13 95.8 9.9 98 138-286 21-118 (126)
27 TIGR03176 AllC allantoate amid 98.8 1.2E-08 2.5E-13 113.5 10.0 81 322-405 53-139 (406)
28 COG4310 Uncharacterized protei 98.8 5.2E-08 1.1E-12 99.5 13.1 156 331-516 173-335 (435)
29 cd02126 PA_EDEM3_like PA_EDEM3 98.7 5E-08 1.1E-12 90.3 9.3 100 142-286 16-118 (126)
30 cd02129 PA_hSPPL_like PA_hSPPL 98.7 5.4E-08 1.2E-12 88.6 9.0 79 155-285 35-113 (120)
31 TIGR01879 hydantase amidase, h 98.6 9.5E-08 2.1E-12 106.2 10.4 81 324-407 53-139 (401)
32 PRK13799 unknown domain/N-carb 98.6 8.1E-08 1.8E-12 111.6 9.7 81 322-405 235-321 (591)
33 cd02132 PA_GO-like PA_GO-like: 98.6 2.9E-07 6.2E-12 86.8 10.6 95 140-286 35-131 (139)
34 PRK13590 putative bifunctional 98.6 1.4E-07 3E-12 109.7 9.9 81 322-405 235-321 (591)
35 cd02123 PA_C_RZF_like PA_C-RZF 98.5 7.4E-07 1.6E-11 85.3 9.8 101 139-286 36-139 (153)
36 cd02122 PA_GRAIL_like PA _GRAI 98.5 9.7E-07 2.1E-11 82.9 9.9 103 134-286 21-130 (138)
37 PF01546 Peptidase_M20: Peptid 98.4 5.8E-06 1.3E-10 81.3 14.6 143 342-513 1-172 (189)
38 cd02127 PA_hPAP21_like PA_hPAP 98.4 1.5E-06 3.3E-11 79.4 9.3 95 143-286 11-108 (118)
39 PRK12890 allantoate amidohydro 98.4 1.1E-06 2.4E-11 98.0 10.3 80 324-406 60-145 (414)
40 PRK12891 allantoate amidohydro 98.3 1.7E-06 3.7E-11 96.6 9.9 77 325-404 63-145 (414)
41 cd02125 PA_VSR PA_VSR: Proteas 98.3 4.6E-06 1E-10 77.2 11.0 62 141-203 9-76 (127)
42 cd04813 PA_1 PA_1: Protease-as 98.3 2.4E-06 5.2E-11 77.9 8.0 38 166-203 36-73 (117)
43 TIGR03107 glu_aminopep glutamy 98.2 2.4E-05 5.2E-10 84.9 16.1 147 353-540 175-341 (350)
44 cd04818 PA_subtilisin_1 PA_sub 98.2 7.1E-06 1.5E-10 75.1 10.0 92 142-285 16-109 (118)
45 PRK09961 exoaminopeptidase; Pr 98.2 3E-05 6.4E-10 84.3 14.4 148 353-540 163-333 (344)
46 PRK12893 allantoate amidohydro 98.1 6.2E-06 1.3E-10 92.0 9.1 80 325-407 63-148 (412)
47 PRK09290 allantoate amidohydro 98.1 8.8E-06 1.9E-10 90.8 10.0 81 324-407 59-145 (413)
48 PRK12892 allantoate amidohydro 98.1 1.2E-05 2.6E-10 89.6 10.3 79 324-406 61-145 (412)
49 COG1363 FrvX Cellulase M and r 98.1 6.6E-05 1.4E-09 80.8 14.8 151 353-542 177-348 (355)
50 KOG2657 Transmembrane glycopro 98.1 2E-05 4.3E-10 86.0 10.7 202 323-541 156-389 (596)
51 PRK07906 hypothetical protein; 98.1 1.5E-05 3.2E-10 89.4 10.2 83 324-409 51-156 (426)
52 cd02120 PA_subtilisin_like PA_ 98.0 1E-05 2.3E-10 74.7 7.1 71 165-286 47-118 (126)
53 PF05343 Peptidase_M42: M42 gl 98.0 2.4E-05 5.2E-10 82.9 10.7 132 353-514 131-283 (292)
54 PRK06133 glutamate carboxypept 98.0 2.6E-05 5.7E-10 86.9 11.1 80 324-408 87-185 (410)
55 PRK09133 hypothetical protein; 98.0 2.5E-05 5.5E-10 88.7 10.9 92 323-420 87-201 (472)
56 TIGR01910 DapE-ArgE acetylorni 97.9 2.8E-05 6.1E-10 85.5 9.2 78 325-406 52-152 (375)
57 cd02124 PA_PoS1_like PA_PoS1_l 97.9 3.7E-05 8E-10 71.4 8.1 37 167-203 53-89 (129)
58 TIGR01883 PepT-like peptidase 97.9 3.1E-05 6.6E-10 84.7 8.4 78 324-406 49-146 (361)
59 PRK08596 acetylornithine deace 97.8 6.9E-05 1.5E-09 83.9 9.7 81 324-407 62-166 (421)
60 PRK13381 peptidase T; Provisio 97.7 0.0001 2.2E-09 82.1 9.5 80 323-406 53-184 (404)
61 KOG2275 Aminoacylase ACY1 and 97.7 0.00019 4.2E-09 77.2 10.8 79 324-405 74-176 (420)
62 TIGR01893 aa-his-dipept aminoa 97.7 0.00012 2.6E-09 83.4 9.9 88 324-423 46-164 (477)
63 PRK07907 hypothetical protein; 97.7 0.0002 4.2E-09 81.0 11.3 80 323-409 69-171 (449)
64 PRK13983 diaminopimelate amino 97.7 0.00013 2.8E-09 80.8 9.8 80 324-407 63-166 (400)
65 PRK06837 acetylornithine deace 97.7 0.00013 2.8E-09 81.8 9.7 80 323-405 82-184 (427)
66 TIGR01892 AcOrn-deacetyl acety 97.7 0.00023 5E-09 77.8 11.3 78 324-408 46-145 (364)
67 PRK09104 hypothetical protein; 97.7 0.00021 4.6E-09 81.0 11.1 94 324-422 68-189 (464)
68 TIGR01882 peptidase-T peptidas 97.7 0.00018 3.9E-09 80.3 10.3 77 324-405 57-187 (410)
69 PRK07473 carboxypeptidase; Pro 97.6 0.00023 5.1E-09 78.4 10.1 81 325-408 62-161 (376)
70 PRK08262 hypothetical protein; 97.6 0.0003 6.6E-09 80.2 11.3 80 325-407 98-202 (486)
71 PRK08588 succinyl-diaminopimel 97.6 0.00023 4.9E-09 78.4 9.2 77 324-406 48-147 (377)
72 PRK13013 succinyl-diaminopimel 97.5 0.00031 6.8E-09 78.6 9.6 79 324-406 71-170 (427)
73 PRK05469 peptidase T; Provisio 97.5 0.00046 9.9E-09 76.9 10.7 78 324-405 55-185 (408)
74 PRK07338 hypothetical protein; 97.5 0.00031 6.6E-09 78.1 9.0 79 325-408 81-178 (402)
75 PRK06915 acetylornithine deace 97.5 0.00038 8.2E-09 77.9 9.6 80 323-406 79-181 (422)
76 PRK07079 hypothetical protein; 97.5 0.0007 1.5E-08 76.9 11.7 83 324-409 72-178 (469)
77 PRK06446 hypothetical protein; 97.5 0.0006 1.3E-08 76.7 11.0 81 324-410 50-153 (436)
78 PRK07522 acetylornithine deace 97.4 0.0005 1.1E-08 75.8 9.3 78 324-408 52-151 (385)
79 PRK13009 succinyl-diaminopimel 97.4 0.00062 1.3E-08 74.8 9.8 78 324-407 47-148 (375)
80 TIGR01880 Ac-peptdase-euk N-ac 97.4 0.00055 1.2E-08 76.0 9.5 80 324-406 57-160 (400)
81 PRK08201 hypothetical protein; 97.4 0.00085 1.8E-08 75.9 11.1 82 324-409 66-170 (456)
82 PRK09864 putative peptidase; P 97.4 0.0019 4.1E-08 70.2 12.8 129 354-514 173-324 (356)
83 PRK04443 acetyl-lysine deacety 97.3 0.0008 1.7E-08 73.3 9.1 75 324-407 48-136 (348)
84 TIGR01886 dipeptidase dipeptid 97.2 0.0011 2.4E-08 75.3 9.4 79 326-408 67-166 (466)
85 PRK07318 dipeptidase PepV; Rev 97.2 0.0011 2.5E-08 75.2 9.4 78 326-407 68-166 (466)
86 PRK05111 acetylornithine deace 97.2 0.0011 2.4E-08 73.1 8.8 76 324-407 60-157 (383)
87 PRK08652 acetylornithine deace 97.2 0.00096 2.1E-08 72.4 8.1 73 324-407 47-133 (347)
88 PRK06156 hypothetical protein; 97.1 0.002 4.4E-08 74.1 10.8 89 325-423 96-213 (520)
89 PRK13007 succinyl-diaminopimel 97.1 0.0015 3.3E-08 71.1 9.2 75 325-408 50-142 (352)
90 PRK08554 peptidase; Reviewed 97.1 0.0023 5E-08 72.0 10.8 92 324-424 52-165 (438)
91 PRK13004 peptidase; Reviewed 97.1 0.002 4.4E-08 71.5 9.7 76 325-406 59-158 (399)
92 COG0624 ArgE Acetylornithine d 97.1 0.0024 5.2E-08 71.2 10.0 97 323-423 61-180 (409)
93 PRK07205 hypothetical protein; 97.0 0.003 6.6E-08 71.2 9.8 75 326-406 66-163 (444)
94 TIGR01900 dapE-gram_pos succin 96.9 0.0031 6.6E-08 69.5 9.3 79 326-407 42-155 (373)
95 TIGR01887 dipeptidaselike dipe 96.9 0.0045 9.8E-08 69.9 10.2 66 338-406 67-153 (447)
96 PRK08651 succinyl-diaminopimel 96.9 0.0031 6.6E-08 69.8 8.6 76 324-408 63-160 (394)
97 TIGR01902 dapE-lys-deAc N-acet 96.9 0.0034 7.4E-08 68.0 8.8 73 325-407 40-126 (336)
98 TIGR01891 amidohydrolases amid 96.9 0.0035 7.7E-08 68.7 8.9 76 324-407 43-137 (363)
99 PRK15026 aminoacyl-histidine d 96.6 0.0082 1.8E-07 68.4 9.8 90 323-424 51-171 (485)
100 TIGR03106 trio_M42_hydro hydro 96.6 0.024 5.3E-07 61.6 12.7 128 355-513 182-324 (343)
101 PRK10199 alkaline phosphatase 96.5 0.0064 1.4E-07 65.6 7.8 73 6-87 4-78 (346)
102 TIGR01246 dapE_proteo succinyl 96.5 0.0098 2.1E-07 65.3 9.5 78 324-407 44-145 (370)
103 PLN02693 IAA-amino acid hydrol 96.5 0.0077 1.7E-07 67.8 8.6 78 324-407 90-183 (437)
104 PRK00466 acetyl-lysine deacety 96.5 0.0054 1.2E-07 66.8 7.2 61 340-407 62-136 (346)
105 COG4187 RocB Arginine degradat 96.3 0.016 3.4E-07 63.0 9.0 98 323-425 64-208 (553)
106 PLN02280 IAA-amino acid hydrol 96.1 0.017 3.6E-07 65.8 8.5 76 324-406 140-232 (478)
107 PRK02256 putative aminopeptida 95.9 0.048 1E-06 61.4 11.0 153 341-515 245-446 (462)
108 TIGR03526 selenium_YgeY putati 95.9 0.028 6.1E-07 62.3 9.2 76 325-406 57-156 (395)
109 KOG2442 Uncharacterized conser 95.7 0.025 5.4E-07 62.0 7.3 93 145-285 73-166 (541)
110 PRK08737 acetylornithine deace 95.7 0.035 7.7E-07 60.9 8.5 69 324-407 54-144 (364)
111 TIGR03320 ygeY M20/DapE family 95.5 0.048 1E-06 60.4 9.0 75 325-405 57-155 (395)
112 PTZ00371 aspartyl aminopeptida 94.9 0.16 3.5E-06 57.5 10.8 145 353-515 248-439 (465)
113 PRK02813 putative aminopeptida 94.2 0.38 8.2E-06 53.9 11.4 140 352-515 230-412 (428)
114 PF04114 Gaa1: Gaa1-like, GPI 93.4 0.33 7.2E-06 55.5 9.3 96 323-427 2-110 (504)
115 KOG2276 Metalloexopeptidases [ 91.1 0.88 1.9E-05 49.4 8.4 76 332-410 85-183 (473)
116 KOG3920 Uncharacterized conser 88.3 0.55 1.2E-05 44.2 3.8 53 146-202 67-119 (193)
117 KOG4628 Predicted E3 ubiquitin 87.6 0.83 1.8E-05 49.2 5.2 40 165-204 75-114 (348)
118 COG1473 AbgB Metal-dependent a 85.2 3.8 8.3E-05 45.4 9.0 78 325-407 57-150 (392)
119 KOG3946 Glutaminyl cyclase [Po 83.5 4.3 9.2E-05 42.3 7.7 49 38-87 47-95 (338)
120 PRK06133 glutamate carboxypept 78.1 8.8 0.00019 42.8 8.8 46 40-85 35-81 (410)
121 PRK07338 hypothetical protein; 77.5 1.2E+02 0.0026 33.4 34.2 44 41-84 16-60 (402)
122 KOG3566 Glycosylphosphatidylin 76.0 8.6 0.00019 43.9 7.8 79 321-409 117-196 (617)
123 PRK12893 allantoate amidohydro 74.0 5.3 0.00012 44.4 5.7 46 39-84 7-60 (412)
124 PRK12890 allantoate amidohydro 69.7 8.5 0.00018 42.9 6.1 46 39-84 6-58 (414)
125 PRK09290 allantoate amidohydro 68.9 8.3 0.00018 43.0 5.8 47 38-84 3-57 (413)
126 PRK12891 allantoate amidohydro 67.9 8.6 0.00019 42.9 5.7 46 39-84 7-60 (414)
127 PRK07906 hypothetical protein; 63.9 64 0.0014 36.0 11.7 25 60-84 21-45 (426)
128 TIGR03176 AllC allantoate amid 62.5 10 0.00022 42.2 4.9 45 42-86 3-55 (406)
129 TIGR01879 hydantase amidase, h 55.9 16 0.00036 40.4 5.1 43 43-85 2-52 (401)
130 PRK07473 carboxypeptidase; Pro 55.9 3.1E+02 0.0067 30.0 15.6 46 39-84 8-54 (376)
131 PRK13799 unknown domain/N-carb 55.1 16 0.00035 42.9 5.1 52 42-93 181-245 (591)
132 PRK15026 aminoacyl-histidine d 53.4 26 0.00056 40.2 6.2 46 38-85 6-51 (485)
133 TIGR03106 trio_M42_hydro hydro 53.1 15 0.00034 39.9 4.2 30 322-352 43-72 (343)
134 PLN02693 IAA-amino acid hydrol 49.7 45 0.00097 37.6 7.3 52 27-82 30-85 (437)
135 TIGR01886 dipeptidase dipeptid 49.7 1.5E+02 0.0032 33.8 11.6 42 42-83 13-64 (466)
136 PRK12892 allantoate amidohydro 46.8 35 0.00076 37.8 5.9 46 39-84 7-59 (412)
137 PRK09133 hypothetical protein; 43.7 51 0.0011 37.4 6.7 45 38-82 33-77 (472)
138 PRK13590 putative bifunctional 43.3 36 0.00078 40.0 5.5 47 40-86 179-237 (591)
139 KOG2194 Aminopeptidases of the 42.8 48 0.001 40.0 6.3 47 30-78 47-95 (834)
140 TIGR01893 aa-his-dipept aminoa 42.7 36 0.00079 38.7 5.3 43 41-85 3-45 (477)
141 cd01356 AcnX_swivel Putative A 42.4 68 0.0015 29.6 5.9 38 165-202 39-79 (123)
142 TIGR01935 NOT-MenG RraA famliy 39.7 1.1E+02 0.0024 29.2 7.1 67 132-200 17-89 (150)
143 PRK06915 acetylornithine deace 39.5 43 0.00094 37.3 5.2 53 28-84 3-57 (422)
144 PRK08652 acetylornithine deace 37.6 56 0.0012 35.0 5.6 42 42-85 2-43 (347)
145 TIGR02998 RraA_entero regulato 34.0 1.6E+02 0.0035 28.5 7.3 68 132-201 21-94 (161)
146 KOG2275 Aminoacylase ACY1 and 33.8 7.2E+02 0.016 27.8 13.6 154 18-202 10-190 (420)
147 PRK08596 acetylornithine deace 32.2 79 0.0017 35.3 5.8 44 42-85 13-57 (421)
148 TIGR01880 Ac-peptdase-euk N-ac 32.1 84 0.0018 34.7 5.9 46 38-83 5-50 (400)
149 PRK04443 acetyl-lysine deacety 31.6 81 0.0017 34.1 5.6 45 39-85 3-47 (348)
150 PRK09372 ribonuclease activity 29.1 2E+02 0.0042 27.8 7.0 66 134-200 23-93 (159)
151 PRK05111 acetylornithine deace 28.8 92 0.002 34.0 5.5 45 41-85 4-53 (383)
152 COG2195 PepD Di- and tripeptid 27.4 3.8E+02 0.0082 30.1 9.9 89 402-512 304-392 (414)
153 TIGR01883 PepT-like peptidase 26.9 86 0.0019 33.9 4.8 41 43-85 1-41 (361)
154 PRK13983 diaminopimelate amino 26.9 1.1E+02 0.0023 33.6 5.6 42 42-83 5-50 (400)
155 PRK08588 succinyl-diaminopimel 26.5 1.1E+02 0.0024 33.3 5.6 42 42-85 2-43 (377)
156 PRK08651 succinyl-diaminopimel 26.5 1.1E+02 0.0024 33.6 5.6 44 42-85 6-50 (394)
157 PRK09864 putative peptidase; P 24.9 66 0.0014 35.3 3.4 29 321-352 39-67 (356)
158 TIGR01891 amidohydrolases amid 23.5 97 0.0021 33.7 4.4 37 45-83 2-38 (363)
159 PRK05469 peptidase T; Provisio 23.3 1.4E+02 0.0031 33.0 5.7 53 478-542 354-406 (408)
160 TIGR01882 peptidase-T peptidas 23.1 1.6E+02 0.0034 32.8 6.1 39 56-94 25-66 (410)
161 TIGR01910 DapE-ArgE acetylorni 23.1 1.1E+02 0.0024 33.3 4.8 38 47-84 3-41 (375)
162 PRK03955 hypothetical protein; 22.8 2.6E+02 0.0056 26.1 6.3 38 165-202 46-86 (131)
163 PRK07522 acetylornithine deace 22.8 1.3E+02 0.0029 32.8 5.3 41 42-83 4-44 (385)
164 PRK00466 acetyl-lysine deacety 22.5 1.3E+02 0.0029 32.3 5.2 42 42-85 10-51 (346)
165 PRK12487 ribonuclease activity 21.7 3.2E+02 0.0069 26.5 7.0 67 133-201 22-94 (163)
166 PRK13381 peptidase T; Provisio 21.2 2.9E+02 0.0063 30.5 7.7 52 478-541 352-403 (404)
167 PF15168 TRIQK: Triple QxxK/R 20.8 84 0.0018 26.2 2.3 22 4-25 56-77 (79)
168 PF10392 COG5: Golgi transport 20.3 6.8E+02 0.015 23.0 9.9 48 517-568 2-49 (132)
169 PRK08262 hypothetical protein; 20.1 1.4E+02 0.003 34.1 4.9 46 39-84 41-93 (486)
170 PRK06446 hypothetical protein; 20.1 1.9E+02 0.004 32.5 5.9 43 43-85 3-46 (436)
No 1
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.1e-100 Score=868.93 Aligned_cols=637 Identities=42% Similarity=0.724 Sum_probs=545.1
Q ss_pred HHHhhccCCCChhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCce-eeeeeEEEEeecccc---ceEEecCCC
Q 005347 30 HSLYTSTSLSDNVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLES-HIASYGVSLTYPVSR---SLSLTRPPP 105 (701)
Q Consensus 30 ~~~~~~~~~i~~~~i~~~l~~ls~~~r~aGs~g~~~~a~yi~~~~~~~Gl~~-~~~~y~v~~~~p~~~---~l~l~~~~g 105 (701)
...++. ....+++...++.++..+|.+||..+.+++.++..+|.+.|++. ..-.|++.++||... ...+...++
T Consensus 46 ~~l~~~--~~~~~ni~~~l~~~~~~~~~a~t~~~~~~a~~i~~~~~~~g~~s~~~~~y~v~l~~p~~~~~~~~~~~~e~~ 123 (702)
T KOG2195|consen 46 LELAQG--ELYASNISKNLNAFTLRPHLAGTEQDLRAAEIILSQYLEAGLRSSSLLAYDVLLSYPEYENPSSVLIKLEKD 123 (702)
T ss_pred HHHhhh--hccccchhhccchhhhhhhhhcchhhHHHHHHHHHHhhhhccccccccceeehhccccccCCccceeccccc
Confidence 344555 67778899999999999999999999999999999999999984 888999999999532 222222234
Q ss_pred CCceEeeecccccCCCCCCCCCCcccccccccCCCcceEeeEEEecCCChhchHHHHhcCCcccceEEEEEeCCCchhhH
Q 005347 106 QPPITFALRQEIYEGDPYADVADEVLPTFHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDI 185 (701)
Q Consensus 106 ~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~k 185 (701)
.+.+.....+..+.+++ ..++.+++|.+||+.|+++|++||+|||+.+||+.|+.+|++++|||+|+|++.+++|.|
T Consensus 124 ~~i~~s~~~~~~~~Gd~---~~~~~~~~~~~~s~~g~~~~~~Vy~N~~~~~d~~~l~~~~i~~~g~i~l~r~~~i~~g~~ 200 (702)
T KOG2195|consen 124 LEIFSSMPHELQVDGDE---ALPDIVEPFRAYSPSGSVTGELVYANYGRIEDFYKLEDLGINLSGKIVLARVGKIYRGKK 200 (702)
T ss_pred ceeeccchhcccCCCcc---cCccccCchhccCcCCCccceEEEEecCchhhhhHhhcCcccccCceEEEEccccchhhh
Confidence 44555566665565554 245678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEEeCCCCCCCCCCCCCCCCCCCC-CCCCCceeccee--cCCCCCCCCCCCCCCcccccChHHHhhhC
Q 005347 186 VHNAFEAGAAGALIFTDRKDYGGGSDDARWFPDDKW-MPPSGVQVGSVY--DGTGDPTTPGWPSSEGCERLSKEEVEKAG 262 (701)
Q Consensus 186 ~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP~~~~-~p~~~v~rg~v~--~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~ 262 (701)
+++|+.+||.|||+|+||.+++..... ++||.++| +|+..+++|.|. .+.|||+|||||+.....+.++ +....+
T Consensus 201 ~~na~~~~a~gviiy~d~~d~~~~~~~-~~~p~~~~~~p~~~v~~g~v~~~~~~gdp~tpg~pa~~~~~~~~~-~~~~~~ 278 (702)
T KOG2195|consen 201 VKNAEAAGADGVIIYTDPYDYGSDEVL-EVYPKGIWFMPEPGVERGKVYNSNGVGDPLTPGYPAVDIYSRHSP-DAKFSG 278 (702)
T ss_pred HhhHHHhhcCcEEEeeccccccccccc-cccCcccccCCccceecceecccCCCCCCCCCCccCccccccCCh-hhhhcC
Confidence 999999999999999999987664433 78999988 899999999995 6789999999999988888775 222235
Q ss_pred CCCCCCccccCHHHHHHHHHHhCCCCCCcccccCCCCCccccCCCCe-EEE-EEEeeeeeeeeeeeEEEEecCCCCCCcE
Q 005347 263 NVPLIPSLPISAKDGETIMRSIGGEVANEDWQGDKDAPIYRVGPGPG-VVN-LSYTGEYVMATIQNVIGIIPGTEEPDRL 340 (701)
Q Consensus 263 ~~~~IP~~~is~~~a~~Ll~~l~g~~~~~~w~~~~~~~~~~~Gp~~~-~v~-l~~~~~~~~~~~~NVia~i~G~~~~~~~ 340 (701)
.+|+||++|||+++++.|++.++|...+. +.++ +.|++||++. ... +.+....+..++.||||+|+|+.+||++
T Consensus 279 ~~P~Ip~~Pis~~~ae~l~~~~~g~~~~~---~~~~-~~~~~gpg~~~~~~~~~~~~~~~~~ki~NIig~I~Gs~epD~~ 354 (702)
T KOG2195|consen 279 GLPKIPSLPISAEDAEILLRLLGGGVKPD---GLLG-VSYRVGPGSTGDKDLVVVQNTREETKIQNIIGKIEGSEEPDRY 354 (702)
T ss_pred CCCCCCCcCccchhHHHHHHHhCCCcccc---cccC-ccccccccccccccceeccceeeeeeeeeEEEEEecCcCCCeE
Confidence 69999999999999999999988776655 3333 8899999752 111 2222567889999999999999999999
Q ss_pred EEEEeccCCcCCCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHHHHHHhhhccEEEEEE
Q 005347 341 VILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLN 420 (701)
Q Consensus 341 Ivl~aH~Ds~~~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iN 420 (701)
||||||+|||.+||.|+++|+|+|+|++|.|..+++.||||+|||+||+|+|||+|++||++|+|++...++.++++|||
T Consensus 355 ViigahrDSw~~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEfGliGStE~~E~~~~~L~~~av~yin 434 (702)
T KOG2195|consen 355 VIIGAHRDSWTFGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEEFGLLGSTEWAEEYLKNLKSRAVVYIN 434 (702)
T ss_pred EEEeccccccccCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchhccccccHHHHHHHHHHhhheeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccC-CccccccChhHHHHHHHHHHHcCCCCCCcchhhhccccCCCCCccccCCCCCCchHhHHhcCCceEEEeeeC
Q 005347 421 IDSAVHE-AGFHASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQHIGVPVADMSFG 499 (701)
Q Consensus 421 lD~~g~g-~~~~~~~~p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~SD~~~F~~~~GIPs~~~~~~ 499 (701)
+|+++.| .+|.+.++|.|.+++.++++.+.+|....++. .+..+| ++|||.+|.+++|||++++.|.
T Consensus 435 ~d~~~~~~~~l~~~~~PlL~~li~~~~k~~~~p~~~~~~~-----------~v~~~g-~~Sd~~~F~~~~GIpsv~~~f~ 502 (702)
T KOG2195|consen 435 VDNAVLGDYTLHVKTTPLLTDLIEEAAKSVLSPDKGDQSN-----------RVLSLG-GGSDYASFLQFAGIPSVDFAFN 502 (702)
T ss_pred ccccccCCceeEEecCccHHHHHHHHHhccCCCCccccce-----------eEeccC-CCCcchhhccccCcceeeeeec
Confidence 9999999 89999999999999999999988887632222 245566 9999999999999999999999
Q ss_pred CCCCcCCCCcccHHHHHhhCCCchHHHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHHhhhcCC-------
Q 005347 500 TGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQLADEEFLPFNYLSYAFELQKSTKDLENEVSGKG------- 572 (701)
Q Consensus 500 ~~~~~yHT~~Dt~~~i~~~~dp~~~~~~~~a~~~~~l~~~La~~~~lP~d~~~y~~~l~~~~~~l~~~~~~~~------- 572 (701)
..||+|||.+||++|+++|.||.|..|.+++.+++..++.+++++++|||+.+|++.+..++..+++...+..
T Consensus 503 ~~yP~yhs~~dt~~~~~k~~D~~~~~~~~~a~~~~~~~l~l~~d~llPfd~~~Y~~~l~~~~~~l~~~~~~~~~~~~~~~ 582 (702)
T KOG2195|consen 503 RTYPFYHSTYDTYEWLDKLLDPKFKQHLAAAGVLGLELLILADDPLLPFDISDYADVLLKTLPKLEELSPDKVNFLLTIQ 582 (702)
T ss_pred CCcceeecccCcHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCccccCcHHHHHHHHHHHHHHHHhhcccccchhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987533321
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHhHHHHHHHHhccCCCCCCCCCCCceEEecCCCCCCCC
Q 005347 573 ISLIPLFKSIEELAKAAAKIDNEKKAKGWASTWKKDQYKVRELNDRLMMAERAFTDRDGLSGRPWYKHLIYAPSKHNDYG 652 (701)
Q Consensus 573 ~~~~~l~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~N~~l~~~er~fl~~~glp~r~~~kHvifaP~~~~~y~ 652 (701)
-.+.++..++..+.+.+..+....+.. +...+..++..|+|||.+||+||+|+|+|+|+|||||+|+|+.|+.|
T Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~N~~l~~~er~f~~p~g~p~~~~yrHv~~gp~~~~~~- 656 (702)
T KOG2195|consen 583 GLFSWRLDALKAAEWESSELSSRFSHG-----DKIEPSKLRPNNDRLMLIERTFLDPAGLPGRSFYRHVIFGPSLHNKY- 656 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-----ccccccccccccHHHHHhHHhhcCcccCCCCcccceeEeCCCccccc-
Confidence 234444555555555554444433332 33455666666999999999999999999999999999999999998
Q ss_pred CCcchhHHHHHHHHh-hhcchhcHHHHHHHHHHHHHHHHHHHHHhc
Q 005347 653 SKYFPAIDDAIEEAM-KLNTAKSWHTVQHEVWRVSRAVRHASLVLN 697 (701)
Q Consensus 653 ~~~fPgi~dai~~~~-~~~~~~~~~~~~~q~~~v~~~i~~Aa~~L~ 697 (701)
.||+|.||+...+ .....+.|.++|+||+++.++|++|+++|+
T Consensus 657 --~~~~v~~a~~~~~~~~~~~~~~~~v~~qi~~~~~~l~~aa~~l~ 700 (702)
T KOG2195|consen 657 --SFPGVDDAIFPGDPDAISKEAWKRVQRQIALLGWTLQGAANTLS 700 (702)
T ss_pred --cccchhhhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999876 455667899999999999999999999997
No 2
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=100.00 E-value=8e-42 Score=340.40 Aligned_cols=203 Identities=46% Similarity=0.776 Sum_probs=174.2
Q ss_pred ccceEEecCCCCCceEeeecccccCCCCCCCCCCcccccccccCCCcceEeeEEEecCCChhchHHHHhcCCcccceEEE
Q 005347 95 SRSLSLTRPPPQPPITFALRQEIYEGDPYADVADEVLPTFHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVL 174 (701)
Q Consensus 95 ~~~l~l~~~~g~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvl 174 (701)
..++.+..+++. ...+.|+....++ ...+.+++|++||++|+++|+|||||||+.+||+.|++.+++++|||||
T Consensus 3 ~~~~~~~~~~~~---~~~~~e~~~~~~~---~~~~~~~~f~a~s~sg~v~g~lVyvnyG~~~D~~~L~~~gvdv~GKIvL 76 (220)
T cd02121 3 KRSLILTKPDGA---TGKLIEDTVLEEP---PSPDVVPPFHAYSASGNVTAELVYANYGSPEDFEYLEDLGIDVKGKIVI 76 (220)
T ss_pred cccceeecCCCc---cccccccccccCC---CCccccccceecCCCCCceEEEEEcCCCcHHHHHHHhhcCCCCCCeEEE
Confidence 334455544332 1144555544333 1345789999999999999999999999999999999999999999999
Q ss_pred EEeCCCchhhHHHHHHHcCCeEEEEEeCCCCCCCCCCC-CCCCCCCCCCCCCCceeccee---cCCCCCCCCCCCCCCcc
Q 005347 175 ARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDD-ARWFPDDKWMPPSGVQVGSVY---DGTGDPTTPGWPSSEGC 250 (701)
Q Consensus 175 v~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~-~~~yP~~~~~p~~~v~rg~v~---~~~Gdp~tPg~ps~~~~ 250 (701)
+|+|.++++.|+++|+++||+|||+|+||.+++....+ +++||++||+|+++||||+|. +++|||+||||||.++.
T Consensus 77 vr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~~yP~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~ 156 (220)
T cd02121 77 ARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENGKTYPDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGA 156 (220)
T ss_pred EECCCccHHHHHHHHHHcCCEEEEEEeCchhcccccccccccCCCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999988766543 368999999999999999996 67899999999999999
Q ss_pred cccChHHHhhhCCCCCCCccccCHHHHHHHHHHhCCCCCCcccccCCCCCccccCCC
Q 005347 251 ERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGGEVANEDWQGDKDAPIYRVGPG 307 (701)
Q Consensus 251 ~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~g~~~~~~w~~~~~~~~~~~Gp~ 307 (701)
+|++.+++ ..+|+||++|||++||++||+.|+|..++.+|+|+++ ++|++||+
T Consensus 157 ~r~~~~~~---~~lP~IPs~PIS~~da~~lL~~L~g~~~p~~W~g~l~-~~y~~g~~ 209 (220)
T cd02121 157 ERRDKEES---KGLPKIPSLPISYRDAQPLLKALGGPGAPSDWQGGLP-VTYRLGFG 209 (220)
T ss_pred cccCcccc---cCCCCCCcccCCHHHHHHHHHHcCCCCCCccccCCCC-CceeeCCC
Confidence 99986544 4799999999999999999999999999999999998 99999875
No 3
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=100.00 E-value=4.1e-37 Score=296.60 Aligned_cols=164 Identities=37% Similarity=0.639 Sum_probs=147.1
Q ss_pred ccccccCCCcceEeeEEEecCCChhchHHHHhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCCCCCCCCCC
Q 005347 132 PTFHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSD 211 (701)
Q Consensus 132 ~~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~ 211 (701)
.+|++||++|+|+|++||||||+.+||++|++.+++++|||||+|||.++++.|+++|+++||+|||+|+||.++..
T Consensus 18 ~~f~~~s~~G~v~g~lVyvn~G~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~--- 94 (183)
T cd02128 18 GGYVAYSAAGTVTGKLVYANYGRKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPI--- 94 (183)
T ss_pred ccccCCCCCCceEEEEEEcCCCCHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCc---
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999976542
Q ss_pred CCCCCCCCCCCCCCCceecceecCCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhCCCCCCc
Q 005347 212 DARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGGEVANE 291 (701)
Q Consensus 212 ~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~g~~~~~ 291 (701)
.|++++|||++.++.|||+||||||.++. +++..++ ..+|+||++|||+++|++||+.|+|+.+|.
T Consensus 95 ----------~~~~~~~~g~~~~~~GDplTPG~ps~~~~-~~~~~~~---~~lP~IPs~PIS~~da~~lL~~l~G~~~p~ 160 (183)
T cd02128 95 ----------DPSETALFGHVHLGTGDPYTPGFPSFNHT-QFPPSQS---SGLPNIPAQTISAAAAAKLLSKMGGPVCPS 160 (183)
T ss_pred ----------ccCcceeecceeccCCCcCCCCCcccccc-ccCcccc---cCCCCCCEeccCHHHHHHHHHHcCCCCCCc
Confidence 24678999999888999999999999876 4655543 368999999999999999999999999999
Q ss_pred ccccCCCCCccccCCCC-eEEEEE
Q 005347 292 DWQGDKDAPIYRVGPGP-GVVNLS 314 (701)
Q Consensus 292 ~w~~~~~~~~~~~Gp~~-~~v~l~ 314 (701)
+|||+ + ++|++||++ .+|+|+
T Consensus 161 ~w~g~-~-~~y~~Gp~~~~~v~~~ 182 (183)
T cd02128 161 GWKGG-D-STCRLGTSSSKNVKLT 182 (183)
T ss_pred cccCC-C-cCEeeCCCCCceEEEe
Confidence 99999 5 999999983 346665
No 4
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=100.00 E-value=6.4e-36 Score=275.73 Aligned_cols=136 Identities=30% Similarity=0.451 Sum_probs=120.4
Q ss_pred ccccccccCCCcceEeeEEEecCCChhchHHHHhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCCCCCCCC
Q 005347 130 VLPTFHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGG 209 (701)
Q Consensus 130 ~~~~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~ 209 (701)
++++|++||++|+|+|++||||||+.+||++|++ +|+|+|||||+|||+++||.|+++|+++||+|||+|+||.|++..
T Consensus 2 ~~p~f~aYS~sG~Vtg~~VYvNyG~~eDf~~L~~-~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~ 80 (153)
T cd02131 2 LLYSYAAYSAKGTLQAEVVDVQYGSVEDLRRIRD-NMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKT 80 (153)
T ss_pred CcCccceeCCCCceEEEEEEecCCCHHHHHHHHh-CCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCc
Confidence 5688999999999999999999999999999997 699999999999999999999999999999999999999988642
Q ss_pred CCCCCCCCCCCCCCCCCceecceecC-CCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhC
Q 005347 210 SDDARWFPDDKWMPPSGVQVGSVYDG-TGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIG 285 (701)
Q Consensus 210 ~~~~~~yP~~~~~p~~~v~rg~v~~~-~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~ 285 (701)
. ++| .++|+ +.+. .|||+||||||.++++|++.+ .+|+||++|||++||++||++-.
T Consensus 81 ~--------~~~---~~v~~--v~~~~~GDP~TPG~PS~~~~~R~~~~------~lP~IPs~PIS~~dA~~lL~~~~ 138 (153)
T cd02131 81 R--------HTW---HQAFM--VSLNPGGDPSTPGYPSADQSCRQCRG------NLTSLLVQPISAYLAKKLLSAPP 138 (153)
T ss_pred C--------CCc---cceEE--EecCCCCCCCCCCCccccCcccCCcC------CCCCCcccccCHHHHHHHHhCCc
Confidence 2 123 16676 5444 499999999999999998753 58999999999999999998754
No 5
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.95 E-value=4e-28 Score=238.67 Aligned_cols=164 Identities=30% Similarity=0.445 Sum_probs=117.5
Q ss_pred cEEEEEeccCC--------cCCCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHHHHHHh
Q 005347 339 RLVILGNHRDA--------WTFGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREM 410 (701)
Q Consensus 339 ~~Ivl~aH~Ds--------~~~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~ 410 (701)
++|||+||+|| +..||+||+||+|+|||+||.|++.. .+|+|+|+|++|+|||.|+.||++|++ +...
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~---~~~~~~i~fv~~~~EE~gl~GS~~~~~-~~~~ 76 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELK---PQPKRTIRFVFFDGEEQGLLGSRAFVE-HDHE 76 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHST---HSSSEEEEEEEESSGGGTSHHHHHHHH-HHHC
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhh---cccCccEEEEEecccccCccchHHHHH-hhhc
Confidence 58999999999 45599999999999999999999843 478999999999999999999999999 4556
Q ss_pred hhccEEEEEEecCcccC-CccccccChhHHHHHHHHHHHcCCCCCCcchhhhccccCCCCCccccCCCCCCchHhHHhcC
Q 005347 411 LASRAVAYLNIDSAVHE-AGFHASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQHI 489 (701)
Q Consensus 411 l~~~~va~iNlD~~g~g-~~~~~~~~p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~SD~~~F~~~~ 489 (701)
+.+++.++||+||+|.+ ..+.....+.+...+....+.+..+. ...+... ........ .+|||.||.. .
T Consensus 77 ~~~~~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~-~~sD~~~F~~-~ 146 (179)
T PF04389_consen 77 ELDNIAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPY--GSSLGPD------VPPEKPTF-GGSDHYPFSK-A 146 (179)
T ss_dssp HHHHEEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHH--HCHTSSE------CEEEESST-TSSTCHHHHT-T
T ss_pred ccccceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhh--hcccccc------cccccCCC-CCCCcHhhhc-C
Confidence 77999999999999998 55656666543222222222211000 0000000 01112333 7899999997 7
Q ss_pred CceEEEeeeCC-CCCcCCCCcccHHHHH
Q 005347 490 GVPVADMSFGT-GYPVYHSMYDDFIWME 516 (701)
Q Consensus 490 GIPs~~~~~~~-~~~~yHT~~Dt~~~i~ 516 (701)
|||++.+.... .+++|||..||+++++
T Consensus 147 gip~~~~~~~~~~~~~~Ht~~Dt~~~~~ 174 (179)
T PF04389_consen 147 GIPAVTLSSTDGYNPYYHTPEDTPDNLD 174 (179)
T ss_dssp T-EEEEEEESSSSGTTTTSTT-SGGGC-
T ss_pred CEeEEEEEecCCCCCCCCCcccChhhcC
Confidence 99999998876 6789999999999885
No 6
>PF04253 TFR_dimer: Transferrin receptor-like dimerisation domain; InterPro: IPR007365 This entry represents the dimerisation domain found in the transferrin receptor, as well as in a number of other proteins including glutamate carboxypeptidase II and N-acetylated-alpha-linked acidic dipeptidase like protein. The transferrin receptor (TfR) assists iron uptake into vertebrate cells through a cycle of endo- and exocytosis of the iron transport protein transferrin (Tf). TfR binds iron-loaded (diferric) Tf at the cell surface and carries it to the endosome, where the iron dissociates from Tf. The apo-Tf remains bound to TfR until it reaches the cell surface, where apo-Tf is replaced by diferric Tf from the serum to begin the cycle again. Human TfR is a homodimeric type II transmembrane protein. The crystal structure of a TfR monomer reveals a 3-domain structure: a protease-like domain that closely resembles carboxy- and amino-peptidases; an apical domain consisting of a beta-sandwich; and a helical dimerisation domain. The dimerisation domain consists of a 4-helical bundle that makes contact with each of the three domains in the dimer partner [].; PDB: 3FF3_A 3FEC_A 3FED_A 3FEE_A 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A ....
Probab=99.94 E-value=4e-27 Score=217.85 Aligned_cols=124 Identities=42% Similarity=0.663 Sum_probs=104.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHhHHHHHHHHhccCCCCCCCCCCCceEEecCCCCCCCC
Q 005347 573 ISLIPLFKSIEELAKAAAKIDNEKKAKGWASTWKKDQYKVRELNDRLMMAERAFTDRDGLSGRPWYKHLIYAPSKHNDYG 652 (701)
Q Consensus 573 ~~~~~l~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~N~~l~~~er~fl~~~glp~r~~~kHvifaP~~~~~y~ 652 (701)
+||++|.+|+.+|+++|++|+.+++........+.+...+|++|++||.+||+||++.|+|+|||||||||||+.+++|+
T Consensus 2 l~l~~L~~ai~~~~~aa~~f~~~~~~~~~~~~~~~~~~~~r~~N~~L~~~Er~Fl~~~Glp~r~~~kHvifap~~~~~y~ 81 (125)
T PF04253_consen 2 LDLDPLKKAISKFKKAAKEFQEWIKSWDEIVGIEPDPLAVRRLNDRLMQFERAFLDPRGLPGRPWYKHVIFAPGRWNGYA 81 (125)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHS------TT-HHHHHHHHHHHHHHHHCTB-TTSBTTBTT--BSSEEEETTEEEE
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHhCcCCCCCCcccceeeeCCCCCCCCc
Confidence 78999999999999999999999988642101145678999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHhhhcchhcHHHHHHHHHHHHHHHHHHHHHhccc
Q 005347 653 SKYFPAIDDAIEEAMKLNTAKSWHTVQHEVWRVSRAVRHASLVLNGK 699 (701)
Q Consensus 653 ~~~fPgi~dai~~~~~~~~~~~~~~~~~q~~~v~~~i~~Aa~~L~~~ 699 (701)
+++||||+|||...+.... |+.+|+||++|+.+|++|++.|++.
T Consensus 82 ~~~fPgI~dai~~~~~~~~---~~~~~~~i~~v~~~i~~Aa~~L~~~ 125 (125)
T PF04253_consen 82 SWTFPGIRDAIEDKDSSKD---WEEAQKQISRVAKAIQNAANTLSDE 125 (125)
T ss_dssp EEESHHHHHHHTTGGGTST---HHHHHHHHHHHHHHHHHHHHHCSS-
T ss_pred CcccHHHHHHHHhcccCch---HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999998865433 9999999999999999999999863
No 7
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.93 E-value=2e-24 Score=220.79 Aligned_cols=328 Identities=24% Similarity=0.226 Sum_probs=236.8
Q ss_pred HHHHHHhhcC-CCCCCCHhhHHHHHHHHHHHHHCCCceeeeeeEEEEeeccccceEEecCCCCCceEeeecccccCCCCC
Q 005347 45 SHHLHTLTRR-PHVAGSEANAEAAAYVLSVFTSCSLESHIASYGVSLTYPVSRSLSLTRPPPQPPITFALRQEIYEGDPY 123 (701)
Q Consensus 45 ~~~l~~ls~~-~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~~y~v~~~~p~~~~l~l~~~~g~~~~~~~l~e~~~~~~~~ 123 (701)
+..++.+... .-.+|++|+..+.++|+..|++.-...++.++.|+-|.-.+..++.-+ + +
T Consensus 3 ~~y~k~~~ayg~li~g~~ger~~v~~vrafLe~~~v~~rL~p~~VlaWe~~e~~le~~~---~------~---------- 63 (486)
T COG4882 3 RLYSKLKGAYGWLIVGAGGERGAVEVVRAFLEESLVSSRLHPFWVLAWELRESGLEPAA---S------W---------- 63 (486)
T ss_pred HHHHHHhhhccceeecCCCchhHHHHHHHHHhccccceeeeeeeeehhhhHhhccCcch---h------h----------
Confidence 3444444443 468999999999999999999877667899999988865544433211 0 0
Q ss_pred CCCCCcccccccccCCCcceEeeEEEecCCChhchHHHHhcCCcccceEEEEEeCCCchhh--HHHHHHHcCCeEEEEEe
Q 005347 124 ADVADEVLPTFHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGD--IVHNAFEAGAAGALIFT 201 (701)
Q Consensus 124 ~~~~~~~~~~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~--k~~~A~~~GA~gvi~~~ 201 (701)
......+||-+|+++|.+|..+ .|+.|+|++.+..+.-... .+..|.++||-|+||-+
T Consensus 64 ------i~ai~~PYsls~~IEgr~v~~~--------------gD~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~ 123 (486)
T COG4882 64 ------ISAIVGPYSLSGDIEGRPVVLE--------------GDAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFES 123 (486)
T ss_pred ------hhhcccccccccccccceeccc--------------CCCCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEec
Confidence 0112467999999999999652 3899999999876533222 35789999999999887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceecceecCCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHH
Q 005347 202 DRKDYGGGSDDARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIM 281 (701)
Q Consensus 202 dp~~~~~~~~~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll 281 (701)
++.. | .| ..|| |.++ .+ ..+++||+..+...+...+-
T Consensus 124 ~~~r-----------------------r-iV--~~Gd-----~gy~-----~~-------s~PtPIPva~v~en~~~y~~ 160 (486)
T COG4882 124 RDPR-----------------------R-IV--TGGD-----WGYS-----VS-------SSPTPIPVAVVPENYSRYAE 160 (486)
T ss_pred CCce-----------------------e-EE--eccc-----cccc-----CC-------CCCCCcceEEeccCcchhhc
Confidence 6421 1 11 1233 2211 11 24689999988765554332
Q ss_pred HHhCCCCCCcccccCCCCCccccCCCCeEEEEEEeeeeeeeeeeeEEEEecCCCCCCcEEEEEeccCCcCCCCCCCchHH
Q 005347 282 RSIGGEVANEDWQGDKDAPIYRVGPGPGVVNLSYTGEYVMATIQNVIGIIPGTEEPDRLVILGNHRDAWTFGAVDPNSGT 361 (701)
Q Consensus 282 ~~l~g~~~~~~w~~~~~~~~~~~Gp~~~~v~l~~~~~~~~~~~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~GA~DnasG~ 361 (701)
. .-++++.++...+.+.++|+|+.-.|. +.+|+++||+|||..|+.||..|+
T Consensus 161 ~-------------------------~~rvrl~vD~~~~~ty~y~~Ia~~~~e---n~vv~i~AH~DHW~~G~tDN~lg~ 212 (486)
T COG4882 161 E-------------------------AGRVRLWVDACVERTYDYNVIAVDGGE---NGVVLIGAHLDHWYTGFTDNILGV 212 (486)
T ss_pred c-------------------------ceeEEEEEecccceeEEEEEEEecCCC---CCceEEeechhhhhhcccchhhhH
Confidence 1 236788888777777999999987654 679999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCC---------cchHHHHHHHHHhhhccEEEEEEecCcccCCcccc
Q 005347 362 AALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGL---------IGSTEWVEENREMLASRAVAYLNIDSAVHEAGFHA 432 (701)
Q Consensus 362 A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl---------~GS~~~~~~~~~~l~~~~va~iNlD~~g~g~~~~~ 432 (701)
+..+++++.|.. . ...+-++.|++||.|+ .||+.|+++... .+.+.+|+|+|.+|.+ .+.+
T Consensus 213 ~~AV~~~~~lr~---~----~~~~~lv~FtAEE~g~p~~~sfyWa~GSr~~lk~~k~--~~~v~~~VN~Dv~g~~-~lv~ 282 (486)
T COG4882 213 AQAVETAGRLRG---R----GLAAGLVVFTAEEHGMPGMASFYWAAGSRGLLKESKA--AEEVEAYVNFDVAGYR-CLVA 282 (486)
T ss_pred HHHHHHHHHHhh---c----CcceeEEEEeccccCCCCCcceeecccchHHHhhcCC--chhhhheecccccccc-chhh
Confidence 999999887653 1 3457789999999774 589999988754 3678899999999986 6778
Q ss_pred ccChhHHHHHHHHHHHcCCCCCCcchhhhccccCCCCCccccCCCCCCchHhHHhcCCceEEEeeeCC---CCCcCCCCc
Q 005347 433 SATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQHIGVPVADMSFGT---GYPVYHSMY 509 (701)
Q Consensus 433 ~~~p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~SD~~~F~~~~GIPs~~~~~~~---~~~~yHT~~ 509 (701)
.+.|.|..+..+..+.+ +.... ..+|...+.. +|||++.+..-+ ...+|||+.
T Consensus 283 ~~~P~L~e~~~~~g~~~----------------------vespe-~y~Ds~~y~~-aGiPS~Ti~SL~~~~~~e~yh~p~ 338 (486)
T COG4882 283 SGAPQLVEHALEAGAVE----------------------VESPE-PYCDSIMYAW-AGIPSLTIHSLWCPGVQEAYHTPR 338 (486)
T ss_pred hcChHHHHHHHHhCCce----------------------ecCCC-cccchhhhhh-cCCCeeEeeeccCCCccceecCCC
Confidence 89999888877654321 11111 4457777765 799999997653 345899999
Q ss_pred ccHHHHH
Q 005347 510 DDFIWME 516 (701)
Q Consensus 510 Dt~~~i~ 516 (701)
||+.-++
T Consensus 339 Dtpa~~~ 345 (486)
T COG4882 339 DTPASWD 345 (486)
T ss_pred CCchhHH
Confidence 9986543
No 8
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.92 E-value=2.9e-24 Score=227.62 Aligned_cols=202 Identities=19% Similarity=0.242 Sum_probs=147.3
Q ss_pred eeeeEEEEecCCCCCCcEEEEEeccCCcC----------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEE
Q 005347 323 TIQNVIGIIPGTEEPDRLVILGNHRDAWT----------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIV 386 (701)
Q Consensus 323 ~~~NVia~i~G~~~~~~~Ivl~aH~Ds~~----------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~ 386 (701)
+..||||+++|.. ++.||++||+||+. .||+||++|+|+|||+||.|.+. +++++|+
T Consensus 96 ~g~nVIa~~~G~~--~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~-----~~~~~I~ 168 (346)
T PRK10199 96 TGSTVIAAHEGKA--PQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV-----PTEYGIR 168 (346)
T ss_pred ccceEEEEECCCC--CCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC-----CCCCcEE
Confidence 4689999999954 57899999999974 39999999999999999999753 5789999
Q ss_pred EEeeCcccCCCcchHHHHHHHHHhhhccEEEEEEecCcccCCcccc-ccC--h-hHH----HHHHHHHHHcCCCCCCcch
Q 005347 387 LCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVHEAGFHA-SAT--P-QLD----ELLKQAAKQVQDPDNSSQT 458 (701)
Q Consensus 387 F~~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g~g~~~~~-~~~--p-~l~----~~~~~~~~~v~~p~~~~~~ 458 (701)
|+++++||.|+.||.+|+++......++++++||+||++.+..+.+ .+. + .+. +.+.++++....+
T Consensus 169 fv~~~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~d~~~~~~g~~~~~~~~~~~~d~~~~~a~~~g~~------ 242 (346)
T PRK10199 169 FVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVNTPEAVRKLTRDRALAIARRHGIA------ 242 (346)
T ss_pred EEEECCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCCCceEEecCCCcHHHHhHHHHHHHHHHHHHcCCc------
Confidence 9999999999999999999866556789999999999988754333 222 2 222 2234444432211
Q ss_pred hhhccccCCCCCc---cccCCCCCCchHhHHhcCCceEEEeeeCC-------C---------C---CcCC-CCcccHHHH
Q 005347 459 IYDSWTGSSNSPV---IGRLGGGGSDYAAFIQHIGVPVADMSFGT-------G---------Y---PVYH-SMYDDFIWM 515 (701)
Q Consensus 459 ~~~~~~~~~~~~~---~~~~~~~~SD~~~F~~~~GIPs~~~~~~~-------~---------~---~~yH-T~~Dt~~~i 515 (701)
+.. .+.+. ....+ .+|||.||.+ .|||++.+..++ . + ..|| |.+|+.++|
T Consensus 243 ~~~-----~~~~~~~~p~g~~-~rSDH~~F~~-~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l 315 (346)
T PRK10199 243 ATT-----NPGLNKNYPKGTG-CCNDAEVFDK-AGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHI 315 (346)
T ss_pred ccc-----CCCccccccCCCc-CCcccHHHHh-cCCCeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHH
Confidence 100 00010 01233 7899999998 799999986542 1 1 2789 799999999
Q ss_pred HhhCCCch-HHHHHHHHHHHHHHHHhcCCC
Q 005347 516 EKFGDPTF-QRHVAAASMWGLVALQLADEE 544 (701)
Q Consensus 516 ~~~~dp~~-~~~~~~a~~~~~l~~~La~~~ 544 (701)
++...-.. ++....++++..++.+||+..
T Consensus 316 ~~~~pgri~~~~~~~~~~~~~~~~~~~~~~ 345 (346)
T PRK10199 316 DKALPGRIERRCRDVVRIMLPLVKELAKAS 345 (346)
T ss_pred HHhcchHHHHHHHhHHHHHHHHHHHHhccC
Confidence 87554332 445578889999999998753
No 9
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.83 E-value=2.4e-20 Score=212.55 Aligned_cols=226 Identities=25% Similarity=0.280 Sum_probs=173.2
Q ss_pred eeeeeeeeEEEEecCCCCCCc-EEEEEeccCCcCC--CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccC
Q 005347 319 YVMATIQNVIGIIPGTEEPDR-LVILGNHRDAWTF--GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEY 395 (701)
Q Consensus 319 ~~~~~~~NVia~i~G~~~~~~-~Ivl~aH~Ds~~~--GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~ 395 (701)
.....+.||+.+|.++..+++ .|++.||+||++. ||.|+++|+|+|||++|.+.+..+ ..+++|+|.++++||.
T Consensus 123 ~~Y~~i~NIvVki~~k~~~~~~~lLlnaHfDSvpt~~gAtDDg~~va~mLe~lRv~s~~~~---~l~~~vVFLfNgaEE~ 199 (834)
T KOG2194|consen 123 LVYQNISNIVVKISPKNGNDKNALLLNAHFDSVPTGPGATDDGSGVASMLEALRVLSKSDK---LLTHSVVFLFNGAEES 199 (834)
T ss_pred heeeeeeeEEEecCCCCCCccceeeeeccccccCCCCCCCcchhHHHHHHHHHHHhhcCCC---cccccEEEEecCcccc
Confidence 345788999999988776666 9999999999986 999999999999999999987632 3489999999999999
Q ss_pred CCcchHHHHHHHHHhhhccEEEEEEecCcccC-CccccccChhHHHHHHHHHHHcCCCCCCcchhhhccccCCCCCcccc
Q 005347 396 GLIGSTEWVEENREMLASRAVAYLNIDSAVHE-AGFHASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGR 474 (701)
Q Consensus 396 Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g~g-~~~~~~~~p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~ 474 (701)
+|.||..|+.+|+ +.+++.+.||||.+|+| ...-+++.|.- .+++...+.+++|.. .++.+..++.+..|
T Consensus 200 ~L~gsH~FItQH~--w~~~~ka~INLea~GsGGreiLFQagp~~-wl~k~Y~~~~phPf~--stlgee~Fq~g~Ip---- 270 (834)
T KOG2194|consen 200 GLLGSHAFITQHP--WSKNIKAVINLEAAGSGGREILFQAGPNH-WLLKAYLQAAPHPFA--STLGEELFQSGIIP---- 270 (834)
T ss_pred hhhhcccceecCh--hhhhhheEEeccccCcccceeEEecCCch-HHHHHHHhhCCCchh--hhhHHHhhhcCcCc----
Confidence 9999999999986 56899999999999998 66666776664 555555566677754 55666555543322
Q ss_pred CCCCCCchHhHHhcCCceEEEeeeCCCCCcCCCCcccHHHHHhhCCCchHHHHHHHHHHHHHHHHhcCCCCCCCC-h---
Q 005347 475 LGGGGSDYAAFIQHIGVPVADMSFGTGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQLADEEFLPFN-Y--- 550 (701)
Q Consensus 475 ~~~~~SD~~~F~~~~GIPs~~~~~~~~~~~yHT~~Dt~~~i~~~~dp~~~~~~~~a~~~~~l~~~La~~~~lP~d-~--- 550 (701)
+.+|+..|.++.|+|.+++.+..+-..|||.+|.++.+ .|+- ++.++..+..++..||++...--. +
T Consensus 271 ---SdTDfrif~eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i----~~gs--~q~tGen~L~~v~~lan~el~~~~~~~~g 341 (834)
T KOG2194|consen 271 ---SDTDFRIFREYGHLPGLDMAFVKNGYVYHTKYDGIQYI----PPGS--LQHTGENILALVRSLANSELDNSTERSKG 341 (834)
T ss_pred ---cccchHHHHHhCCcccceeeeeeccceEEeeccccccc----Ccch--hhhhhhHHHHHHHHHhchhhccccccCCC
Confidence 78999999998889999999865556899999999876 3432 345677777888888887221111 0
Q ss_pred hHHHHHHHHHHHHHH
Q 005347 551 LSYAFELQKSTKDLE 565 (701)
Q Consensus 551 ~~y~~~l~~~~~~l~ 565 (701)
+-|.+.+..++-.+.
T Consensus 342 ~vyfdv~g~~~~~y~ 356 (834)
T KOG2194|consen 342 TVYFDVVGKYFLAYS 356 (834)
T ss_pred ceehhhhhhhhheee
Confidence 235555555554444
No 10
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.76 E-value=5.4e-18 Score=189.87 Aligned_cols=168 Identities=27% Similarity=0.327 Sum_probs=121.6
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcCC--CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchH
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF--GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGST 401 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~--GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~ 401 (701)
..++.+.+.+ ...+..+++++|+|+++. ||+||+||+|+|||+||.|+.. +|+|+|+|++|++||.|+.||.
T Consensus 195 ~~~~~~~~~~-~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~-----~p~~~v~f~~~~aEE~Gl~GS~ 268 (435)
T COG2234 195 SQIIEAIIGT-AHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN-----PPKRTVRFVAFGAEESGLLGSE 268 (435)
T ss_pred cccceEEEec-cCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC-----CCCceEEEEEecchhhcccccH
Confidence 3444444433 335889999999999554 9999999999999999999875 6999999999999999999999
Q ss_pred HHHHHHHHhhhccEEEEEEecCcccCC---ccccccCh--hHHHHHHHHHHHcCCCCCCcchhhhccccCCCCCccccCC
Q 005347 402 EWVEENREMLASRAVAYLNIDSAVHEA---GFHASATP--QLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLG 476 (701)
Q Consensus 402 ~~~~~~~~~l~~~~va~iNlD~~g~g~---~~~~~~~p--~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~ 476 (701)
+|+.++...+.+++.++||+||+|... .+...+++ .....+.+..+.+..+... .......
T Consensus 269 ~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 334 (435)
T COG2234 269 AYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVDP--------------STVQDFD 334 (435)
T ss_pred HHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhccc--------------cccCCCC
Confidence 999998876778888899999999852 23333322 2222333333322111110 0112333
Q ss_pred CCCCchHhHHhcCCceEEEeeeCCC-----CCcCCCCcccHHH
Q 005347 477 GGGSDYAAFIQHIGVPVADMSFGTG-----YPVYHSMYDDFIW 514 (701)
Q Consensus 477 ~~~SD~~~F~~~~GIPs~~~~~~~~-----~~~yHT~~Dt~~~ 514 (701)
.+|||.||.. .|||++.+..... -+++||..|| +.
T Consensus 335 -~~sd~~~f~~-~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~ 374 (435)
T COG2234 335 -PRSDHYPFTE-AGIPSLFLFSGAPGGVEAVAWGHTAADT-DK 374 (435)
T ss_pred -CCCcchhhhh-cCCcceeeeecCCccccccccccccccc-cc
Confidence 8999999998 7999998876532 3589999997 64
No 11
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.56 E-value=1.8e-14 Score=133.60 Aligned_cols=104 Identities=22% Similarity=0.303 Sum_probs=82.6
Q ss_pred ccccCCCcceEeeEEEecCCChhchHHHHhcCCcccceEEEEEeCCC--chhhHHHHHHHcCCeEEEEEeCCCCCCCCCC
Q 005347 134 FHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQI--FRGDIVHNAFEAGAAGALIFTDRKDYGGGSD 211 (701)
Q Consensus 134 ~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~--~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~ 211 (701)
.++||++++++|++||+|+|+.+||+ +++++|||||++++.+ .+..|+++|+++||+|||+|++....
T Consensus 14 ~~~~s~~~~~~~~lV~~g~G~~~d~~-----~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~----- 83 (127)
T cd04819 14 ALPRSPSGEAKGEPVDAGYGLPKDFD-----GLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGV----- 83 (127)
T ss_pred EcCCCCCCCeeEEEEEeCCCCHHHcC-----CCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCc-----
Confidence 46788999999999999999999997 8899999999999988 78899999999999999999753110
Q ss_pred CCCCCCCCCCCCCCCceecceecCCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhCC
Q 005347 212 DARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (701)
Q Consensus 212 ~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~g 286 (701)
+ +.++.+...+ ...+.||++.||.+|+++|+++++.
T Consensus 84 ----~----------------------~~~~~~~~~~-------------~~~~~IP~v~Is~edg~~L~~~l~~ 119 (127)
T cd04819 84 ----L----------------------PATGDEGTED-------------GPPSPIPAASVSGEDGLRLARVAER 119 (127)
T ss_pred ----C----------------------cccccccccC-------------CCCCCCCEEEEeHHHHHHHHHHHhc
Confidence 0 0111111000 1346899999999999999999863
No 12
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.56 E-value=2.3e-14 Score=150.64 Aligned_cols=177 Identities=23% Similarity=0.271 Sum_probs=113.3
Q ss_pred EEEEEEeeeeeeeeeeeEEEEecCCCCCCcEEEEEeccCCcCCCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEe
Q 005347 310 VVNLSYTGEYVMATIQNVIGIIPGTEEPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCN 389 (701)
Q Consensus 310 ~v~l~~~~~~~~~~~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~ 389 (701)
+.++.++++.+.....-.--.|||.. ++.|++++|.||.. -||||.||.++++++||.|+++ +++.|.||++
T Consensus 103 ~Y~V~IdS~l~~G~L~ygE~~ipG~s--~~EillsthiCHPs-mANdnLSG~~v~~~La~~L~~~-----~~rytYRflf 174 (386)
T PF09940_consen 103 EYEVVIDSTLEDGSLTYGEFVIPGES--DEEILLSTHICHPS-MANDNLSGPAVLTFLAKWLKQL-----PNRYTYRFLF 174 (386)
T ss_dssp EEEEEEEEEEES-EEEEEEEEE--SS--S-EEEEEEE----S--TTTTHHHHHHHHHHHHHHTTS-------SSEEEEEE
T ss_pred ceEEEEeeeecCCceeEEEEEecCCC--CCeEEEEEeccCcc-cccccccHHHHHHHHHHHHhcC-----CcCceEEEEE
Confidence 46666777776677777777889965 67899999999965 6999999999999999999875 5569999999
Q ss_pred eCcccCCCcchHHHHHHHHHhhhccEEEEEEecCcccCCccccccC----hhHHHHHHHHHHHcCCCCCCcchhhhcccc
Q 005347 390 WDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVHEAGFHASAT----PQLDELLKQAAKQVQDPDNSSQTIYDSWTG 465 (701)
Q Consensus 390 ~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g~g~~~~~~~~----p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~ 465 (701)
.. +.+||-.|+.++.+.+++++++-++|.|+|....+....| .....++..+.+.... .-..|
T Consensus 175 ~P----eTIGsI~yLskn~~~l~~~v~~G~vLtcvGD~~~~syk~Sr~g~~~iDr~~~~vl~~~~~----~~~~~----- 241 (386)
T PF09940_consen 175 VP----ETIGSITYLSKNLDELKKNVKAGLVLTCVGDDGAYSYKRSRRGNTLIDRAAAHVLKHSGP----NFKIY----- 241 (386)
T ss_dssp E-----TTHHHHHHHHH-GGGGGG-EEEEEE--S--SSS-EEEE--TTSSSHHHHHHHHHHHHSSS-----EEEE-----
T ss_pred cc----ccHHHHHHHHHCHHHHhhheeeeEEEEEecCCCCcceecCCCCCcHHHHHHHHHHHhcCC----CceEe-----
Confidence 98 6899999999999999888999999999998654444333 3444555555554321 11111
Q ss_pred CCCCCccccCCCCCCchHhHHhcCC--ceEEEeeeC--CCCCcCCCCcccHHHHH
Q 005347 466 SSNSPVIGRLGGGGSDYAAFIQHIG--VPVADMSFG--TGYPVYHSMYDDFIWME 516 (701)
Q Consensus 466 ~~~~~~~~~~~~~~SD~~~F~~~~G--IPs~~~~~~--~~~~~yHT~~Dt~~~i~ 516 (701)
.+-..|||...|.. -| +|+..+.-+ +.||.|||..|+++.|+
T Consensus 242 --------~F~~~GsDERQfcS-PG~dLPv~~~~Rs~yg~ypEYHTS~Dnl~fi~ 287 (386)
T PF09940_consen 242 --------DFLPRGSDERQFCS-PGFDLPVGSLMRSKYGEYPEYHTSLDNLDFIS 287 (386)
T ss_dssp -----------S-SSTHHHHTS-TTT---EEEEESS-TT--TTTTBTTSSGGG--
T ss_pred --------cccccCCCcceeec-CCcCCceeeeecccccCCcccccCCCccccCC
Confidence 12127899999987 57 899988754 36899999999998773
No 13
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.46 E-value=1.5e-12 Score=132.56 Aligned_cols=167 Identities=22% Similarity=0.291 Sum_probs=115.7
Q ss_pred cEEEEEeccCCcC------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHHHHHHhh-
Q 005347 339 RLVILGNHRDAWT------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREML- 411 (701)
Q Consensus 339 ~~Ivl~aH~Ds~~------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~l- 411 (701)
++|++.|++|+.. +||+++.||.++||++|++|+++.+.--.++|.|.|++|.||.+|++||+.|+.+.....
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f 80 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNF 80 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcC
Confidence 5899999999975 399999999999999999999884322357899999999999999999999999854322
Q ss_pred -----------hccEEEEEEecCcccCC--cccccc-----C---hhHHHHHHHHHHHcCCCCCCcchhhhccccCCCCC
Q 005347 412 -----------ASRAVAYLNIDSAVHEA--GFHASA-----T---PQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSP 470 (701)
Q Consensus 412 -----------~~~~va~iNlD~~g~g~--~~~~~~-----~---p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~ 470 (701)
.++|-.+|.++.+|... .+.++. . ..+.+++....+.... ....+-. . ..
T Consensus 81 ~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~---~~~~~~~---~---~~ 151 (234)
T PF05450_consen 81 PSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLAS---SNIVIKK---A---SS 151 (234)
T ss_pred cccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhccc---cccceec---c---cc
Confidence 24788899999988763 355441 1 1234444444432211 0011100 0 00
Q ss_pred ccccCCCCCCchHhHHhcC-CceEEEeeeCC---CCCcCCCCcccHHHHH
Q 005347 471 VIGRLGGGGSDYAAFIQHI-GVPVADMSFGT---GYPVYHSMYDDFIWME 516 (701)
Q Consensus 471 ~~~~~~~~~SD~~~F~~~~-GIPs~~~~~~~---~~~~yHT~~Dt~~~i~ 516 (701)
.-.++ +.|-...|++.. +||++.+.-.. .+++||+.+|+.++++
T Consensus 152 ~~~~L--PPsS~~sFLr~~~~i~~vVLtd~~~~f~N~~y~S~~D~~~ni~ 199 (234)
T PF05450_consen 152 SNPPL--PPSSLQSFLRKDPNIPGVVLTDHDSQFTNKYYNSILDDAENIN 199 (234)
T ss_pred CCCCC--CcchHHHHHccCCCCCEEEecCCCcccccCCccCcccChhhhc
Confidence 01123 445688999853 69999886543 2579999999999885
No 14
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.5e-12 Score=126.57 Aligned_cols=223 Identities=21% Similarity=0.219 Sum_probs=137.4
Q ss_pred CCCCCCccccCHHHHHHHHHHhCCCCCCcccccCCCCCccccCCCCeEEEEEEeeeeeeeeeeeEEEEecCCCCCCcEEE
Q 005347 263 NVPLIPSLPISAKDGETIMRSIGGEVANEDWQGDKDAPIYRVGPGPGVVNLSYTGEYVMATIQNVIGIIPGTEEPDRLVI 342 (701)
Q Consensus 263 ~~~~IP~~~is~~~a~~Ll~~l~g~~~~~~w~~~~~~~~~~~Gp~~~~v~l~~~~~~~~~~~~NVia~i~G~~~~~~~Iv 342 (701)
..|++|--+=+++..+-|.+.+..- +|....+.++. ..-.......|+|+++.... .++.|
T Consensus 61 lv~Rvpgs~g~~~vr~~i~~~l~~l----~w~ve~~~f~~-------------~tp~g~~~f~nii~tl~~~A--~r~lV 121 (338)
T KOG3946|consen 61 LVPRVPGSPGSRQVRRFIIQHLRNL----GWAVETDAFTD-------------NTPLGTRNFNNLIATLDPNA--SRYLV 121 (338)
T ss_pred hccccCCCCccHHHHHHHHHHHHhc----Cceeeeccccc-------------cCcceeeeeeeEEEecCCCc--chhee
Confidence 3678888888888888888877542 34332221110 01123456789999997653 78999
Q ss_pred EEeccCCcCC------CCCCCchHHHHHHHHHHHHHHhHH-cCCCCCCcEEEEeeCccc--------CCCcchHHHHHHH
Q 005347 343 LGNHRDAWTF------GAVDPNSGTAALLEVAQRLNKLQK-RGWKPRRTIVLCNWDAEE--------YGLIGSTEWVEEN 407 (701)
Q Consensus 343 l~aH~Ds~~~------GA~DnasG~A~lLElAr~l~~~~~-~g~~p~rtI~F~~~~~EE--------~Gl~GS~~~~~~~ 407 (701)
+.+|||+..+ ||.|.+.-+|+||++||++.+... +--++.-++.++|||||| ..+.||++.++.+
T Consensus 122 lachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA~~~ 201 (338)
T KOG3946|consen 122 LACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLAAKW 201 (338)
T ss_pred eecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHHHHH
Confidence 9999999753 999999999999999999987654 223577899999999999 3478999988874
Q ss_pred HHhh---------hccEEEEEEecCcccC-Cccc---cccChhHHHHHHHHHHH------cCCCCCCcchhhhccccCCC
Q 005347 408 REML---------ASRAVAYLNIDSAVHE-AGFH---ASATPQLDELLKQAAKQ------VQDPDNSSQTIYDSWTGSSN 468 (701)
Q Consensus 408 ~~~l---------~~~~va~iNlD~~g~g-~~~~---~~~~p~l~~~~~~~~~~------v~~p~~~~~~~~~~~~~~~~ 468 (701)
.... .+++-..+=+|..|.. +.|. -.+.-.+..+ .+...+ +..-.. -...|+
T Consensus 202 ~sw~~~~~r~~~~ld~idl~vLldllga~~p~f~~~~~~t~~wF~Rl-~~iE~~l~~~g~l~s~r~-~~~~Fq------- 272 (338)
T KOG3946|consen 202 ESWPHSGIRGDLLLDGIDLLVLLDLLGAPNPTFYNFFPNTDRWFHRL-QSIEGELALLGLLASHRL-PPRYFQ------- 272 (338)
T ss_pred hccCCCCCccccccccchHhhhHHHhcCCChhHhhcCcchHHHHHHH-HHHHHHHHHHHHHHhccC-Cchhcc-------
Confidence 4321 2233333334444443 2221 1111111111 111111 100000 000111
Q ss_pred CCccccCCCCCCchHhHHhcCCceEEEeeeCCCCCcCCCCcccHHHHH
Q 005347 469 SPVIGRLGGGGSDYAAFIQHIGVPVADMSFGTGYPVYHSMYDDFIWME 516 (701)
Q Consensus 469 ~~~~~~~~~~~SD~~~F~~~~GIPs~~~~~~~~~~~yHT~~Dt~~~i~ 516 (701)
+... .+.-+.||.||+. .|||++.+.......+|||+.|+..+++
T Consensus 273 -~~~~-~~~veDDHiPFlr-rgVPVLHlI~~pFPsvWHt~dD~e~nld 317 (338)
T KOG3946|consen 273 -PGGL-SSVVEDDHIPFLR-RGVPVLHLIPVPFPSVWHTPDDNERNLD 317 (338)
T ss_pred -ccCc-cccccCCcchhhh-cCCceEEecCCCCcccccCccchhhcCC
Confidence 0001 1225679999998 5999999987544459999999998874
No 15
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=99.35 E-value=1.9e-12 Score=120.26 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=62.8
Q ss_pred cccccccccCCCcceEeeEEEecCCChhchHHHHh-cCCcccceEEEEEeCCC------------chhhHHHHHHHcCCe
Q 005347 129 EVLPTFHGYAKSGTVIGPVVYVNYGRVEDYVTLKE-MVVNVTGTVVLARYGQI------------FRGDIVHNAFEAGAA 195 (701)
Q Consensus 129 ~~~~~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~-~gv~v~GkIvlv~~g~~------------~~~~k~~~A~~~GA~ 195 (701)
++++.+.+++++|+++|+|||||||..++...+.+ .++|++|||||++.+.+ .++.|+++|+++||+
T Consensus 8 d~~~~~~~~~~~g~v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~ 87 (137)
T cd04820 8 DLLIGASAAEPAASVEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAI 87 (137)
T ss_pred ceEeeccccCCCCCceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCe
Confidence 45666778889999999999999998543211111 28999999999998875 256899999999999
Q ss_pred EEEEEeCCCCC
Q 005347 196 GALIFTDRKDY 206 (701)
Q Consensus 196 gvi~~~dp~~~ 206 (701)
|||+|+||.+.
T Consensus 88 aVIi~~d~~~~ 98 (137)
T cd04820 88 GMITLTTPRSE 98 (137)
T ss_pred EEEEEeCCccc
Confidence 99999998754
No 16
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.32 E-value=1.1e-11 Score=114.11 Aligned_cols=108 Identities=21% Similarity=0.294 Sum_probs=80.3
Q ss_pred cccccCCCcceEeeEEEecCCChhchHHHHhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCCCCCCCCCCC
Q 005347 133 TFHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDD 212 (701)
Q Consensus 133 ~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~ 212 (701)
+|.+++++++++|+|||++++..+..+.+...+.+++|||||++.|.|.+..|+.+|+++||+|+|+|++.....
T Consensus 7 ~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~----- 81 (122)
T cd04816 7 SYSPSTPPGGVTAPLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGG----- 81 (122)
T ss_pred eccCCCCCCCcEEEEEEcCCCCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCcc-----
Confidence 477788999999999999866543333222236789999999999999999999999999999999998643110
Q ss_pred CCCCCCCCCCCCCCceecceecCCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhCC
Q 005347 213 ARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (701)
Q Consensus 213 ~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~g 286 (701)
..+. .+++ .....||++.|+++++++|++.++.
T Consensus 82 ---------------~~~~----~~~~----------------------~~~~~iP~~~Is~~~G~~l~~~l~~ 114 (122)
T cd04816 82 ---------------TAGT----LGAP----------------------NIDLKVPVGVITKAAGAALRRRLGA 114 (122)
T ss_pred ---------------cccc----ccCC----------------------CCCCeeeEEEEcHHHHHHHHHHHcC
Confidence 0000 0110 0134699999999999999999864
No 17
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.28 E-value=2.5e-11 Score=111.87 Aligned_cols=101 Identities=31% Similarity=0.475 Sum_probs=78.0
Q ss_pred cccccCCCcceEeeEEEec-CCC-hhchHHHHhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCCCCCCCCC
Q 005347 133 TFHGYAKSGTVIGPVVYVN-YGR-VEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGS 210 (701)
Q Consensus 133 ~~~a~S~~G~v~g~lVyv~-~G~-~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~ 210 (701)
..++|++.++++|+|||++ .|+ ++||. .+++|||||++.|.|.+.+|+++|+++||+|||+|++..+. .
T Consensus 12 ~~~~~~~~~~~~g~lv~~~~~gC~~~~~~------~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~-~-- 82 (122)
T cd02130 12 TAFTYSPAGEVTGPLVVVPNLGCDAADYP------ASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAG-G-- 82 (122)
T ss_pred eecccCCCCCcEEEEEEeCCCCCCcccCC------cCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCc-c--
Confidence 3578999999999999996 464 56764 47999999999999999999999999999999999764210 0
Q ss_pred CCCCCCCCCCCCCCCCceecceecCCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhCC
Q 005347 211 DDARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (701)
Q Consensus 211 ~~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~g 286 (701)
. ++.++. .....||++.|+.++++.|++.++.
T Consensus 83 -----------------~------------~~~~~~---------------~~~~~Ip~v~Is~~~G~~L~~~l~~ 114 (122)
T cd02130 83 -----------------L------------SGTLGE---------------PSGPYVPTVGISQEDGKALVAALAN 114 (122)
T ss_pred -----------------c------------ccccCC---------------CCCCEeeEEEecHHHHHHHHHHHhc
Confidence 0 011110 0135799999999999999998853
No 18
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.25 E-value=3.4e-11 Score=112.39 Aligned_cols=102 Identities=23% Similarity=0.395 Sum_probs=77.8
Q ss_pred ccccCCCcceEeeEEEecCCChhchHHHHhcCCcccceEEEEEeCCCc-----hhhHHHHHHHcCCeEEEEEeCCCCCCC
Q 005347 134 FHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIF-----RGDIVHNAFEAGAAGALIFTDRKDYGG 208 (701)
Q Consensus 134 ~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~-----~~~k~~~A~~~GA~gvi~~~dp~~~~~ 208 (701)
|..+.+.|.++|+||+++-|. .||. +.+++|||||+++|.|. +.+|+++|+++||+|||+|++..+.+
T Consensus 27 ~~s~~~~g~~tg~lv~~g~~g-~d~~-----~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g- 99 (139)
T cd04817 27 YASMPVTGSATGSLYYCGTSG-GSYI-----CGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAG- 99 (139)
T ss_pred ccccccCCcceEEEEEccCCC-cccc-----CCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCC-
Confidence 344566899999999998665 4665 67999999999999998 89999999999999999998742211
Q ss_pred CCCCCCCCCCCCCCCCCCceecceecCCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhCC
Q 005347 209 GSDDARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (701)
Q Consensus 209 ~~~~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~g 286 (701)
.+.+. .|++ .....||++.|++++++.|++++..
T Consensus 100 ------------------~~~~~----lg~~----------------------~~~~~IP~v~is~~dG~~L~~~l~~ 133 (139)
T cd04817 100 ------------------LQNPF----LVDT----------------------NNDTTIPSVSVDRADGQALLAALGQ 133 (139)
T ss_pred ------------------ccccc----ccCC----------------------CCCceEeEEEeeHHHHHHHHHHhcC
Confidence 01111 1221 0135899999999999999998853
No 19
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=99.24 E-value=1.8e-11 Score=115.65 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=57.3
Q ss_pred cccCCCcceEeeEEEecCCChh-chHHHHhcCCcccceEEEEEeCC------------------CchhhHHHHHHHcCCe
Q 005347 135 HGYAKSGTVIGPVVYVNYGRVE-DYVTLKEMVVNVTGTVVLARYGQ------------------IFRGDIVHNAFEAGAA 195 (701)
Q Consensus 135 ~a~S~~G~v~g~lVyv~~G~~~-D~~~L~~~gv~v~GkIvlv~~g~------------------~~~~~k~~~A~~~GA~ 195 (701)
+++|++|+++|++||||||+.+ ++.+-...++||+|||||+..+. +.++.|+.+|+++||+
T Consensus 12 ~~~s~sg~vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (151)
T cd04822 12 FAFSRSGAVTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAA 91 (151)
T ss_pred eccCCCCCceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCe
Confidence 6678889999999999999743 22222224999999999996552 3456899999999999
Q ss_pred EEEEEeCCCCC
Q 005347 196 GALIFTDRKDY 206 (701)
Q Consensus 196 gvi~~~dp~~~ 206 (701)
|||+|++|.+.
T Consensus 92 aVIv~~d~~~~ 102 (151)
T cd04822 92 AVIVVNGPNSH 102 (151)
T ss_pred EEEEEeCCccc
Confidence 99999998654
No 20
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.14 E-value=1.8e-10 Score=109.19 Aligned_cols=93 Identities=27% Similarity=0.346 Sum_probs=75.8
Q ss_pred CCCcceEeeEEEecCCChhchHHHHhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCCCCCCCCCCCCCCCC
Q 005347 138 AKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFP 217 (701)
Q Consensus 138 S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP 217 (701)
.+.+.+++++||+|+|..+||. +.+++||||||+.|.|.+..|+.+|+++||+|+|+|++.....
T Consensus 21 ~~~~~~~~~lv~~g~g~~~d~~-----~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~---------- 85 (143)
T cd02133 21 TDLLGKTYELVDAGLGTPEDFE-----GKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLI---------- 85 (143)
T ss_pred CCCCCcEEEEEEccCCchhccC-----CCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcc----------
Confidence 4567899999999999999997 6789999999999999888999999999999999998752100
Q ss_pred CCCCCCCCCceecceecCCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhC
Q 005347 218 DDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIG 285 (701)
Q Consensus 218 ~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~ 285 (701)
.+ .+ .....||++.|+++++++|++.+.
T Consensus 86 --------------------~~-~~-------------------~~~~~iP~v~Is~~dG~~L~~~l~ 113 (143)
T cd02133 86 --------------------PG-TL-------------------GEAVFIPVVFISKEDGEALKAALE 113 (143)
T ss_pred --------------------cc-cC-------------------CCCCeEeEEEecHHHHHHHHHHHh
Confidence 00 00 012368999999999999999885
No 21
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=99.13 E-value=9.6e-11 Score=109.56 Aligned_cols=65 Identities=28% Similarity=0.347 Sum_probs=55.1
Q ss_pred cccCCCcceEeeEEEecCCCh------hchHHHHhcCCcccceEEEEEeCCC------------------chhhHHHHHH
Q 005347 135 HGYAKSGTVIGPVVYVNYGRV------EDYVTLKEMVVNVTGTVVLARYGQI------------------FRGDIVHNAF 190 (701)
Q Consensus 135 ~a~S~~G~v~g~lVyv~~G~~------~D~~~L~~~gv~v~GkIvlv~~g~~------------------~~~~k~~~A~ 190 (701)
+.+|.++.++|++|||+||.. +||+ ++||+|||||+..|.+ ....|...|+
T Consensus 12 ~~~~~~~~~~aelVfvGyGi~a~~~~~dDYa-----g~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~ 86 (142)
T cd04814 12 LNVDAVAIKDAPLVFVGYGIKAPELSWDDYA-----GLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAA 86 (142)
T ss_pred cCCCCccccceeeEEecCCcCCCCCChhhcC-----CCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHH
Confidence 445678889999999999965 5666 8999999999987765 2457999999
Q ss_pred HcCCeEEEEEeCCC
Q 005347 191 EAGAAGALIFTDRK 204 (701)
Q Consensus 191 ~~GA~gvi~~~dp~ 204 (701)
++||+|||+|+++.
T Consensus 87 ~~GA~gvIii~~~~ 100 (142)
T cd04814 87 RHGAAGVLIVHELA 100 (142)
T ss_pred HCCCcEEEEEeCCC
Confidence 99999999999864
No 22
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.09 E-value=6.8e-10 Score=103.87 Aligned_cols=105 Identities=24% Similarity=0.261 Sum_probs=73.0
Q ss_pred ccccCCCcceEeeEEEecCCChhchHHHHhc-CCcccceEEEEEeCCC------chhhH-------HHHHHHcCCeEEEE
Q 005347 134 FHGYAKSGTVIGPVVYVNYGRVEDYVTLKEM-VVNVTGTVVLARYGQI------FRGDI-------VHNAFEAGAAGALI 199 (701)
Q Consensus 134 ~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~-gv~v~GkIvlv~~g~~------~~~~k-------~~~A~~~GA~gvi~ 199 (701)
|.+.++.++++|++|+++ ++..+.+. +.+++|||||+..+.| ..+.| ...|+++||+|+|+
T Consensus 8 ~s~~t~~~gvta~vv~v~-----~~~~~~~~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv 82 (134)
T cd04815 8 GSVATPPEGITAEVVVVK-----SFDELKAAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLI 82 (134)
T ss_pred CCCCCCCCCcEEEEEEEC-----CHHHHHhcchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEE
Confidence 344456677999999996 22333333 5699999999999888 66677 79999999999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCCCCCCCceecceecCCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHH
Q 005347 200 FTDRKDYGGGSDDARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGET 279 (701)
Q Consensus 200 ~~dp~~~~~~~~~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~ 279 (701)
++...... +.++++. . |.| ...+.||++.|+.+|+.+
T Consensus 83 ~s~~~~~~-------------~~~~~G~----~----~~~----------------------~~~~~IP~v~is~ed~~~ 119 (134)
T cd04815 83 RSIGTDSH-------------RSPHTGM----M----SYD----------------------DGVPKIPAAAISVEDADM 119 (134)
T ss_pred EecCcccC-------------CCCcCCc----c----ccC----------------------CCCCCCCEEEechhcHHH
Confidence 98421100 0111111 0 111 124679999999999999
Q ss_pred HHHHhCC
Q 005347 280 IMRSIGG 286 (701)
Q Consensus 280 Ll~~l~g 286 (701)
|.++++.
T Consensus 120 L~r~l~~ 126 (134)
T cd04815 120 LERLAAR 126 (134)
T ss_pred HHHHHhC
Confidence 9999864
No 23
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.03 E-value=4.1e-10 Score=99.76 Aligned_cols=64 Identities=36% Similarity=0.437 Sum_probs=49.1
Q ss_pred CCCcceEeeEEEecCCChhchHHH-HhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEe
Q 005347 138 AKSGTVIGPVVYVNYGRVEDYVTL-KEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFT 201 (701)
Q Consensus 138 S~~G~v~g~lVyv~~G~~~D~~~L-~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~ 201 (701)
|+.|+++++||+.+++...+.... ...+.+++||||||+.|.+.+..|+.+|+++||+|+|+|+
T Consensus 1 ~~~~~~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~ 65 (101)
T PF02225_consen 1 SPSGTVTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYN 65 (101)
T ss_dssp ---EEEEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-
T ss_pred CCCCCEEEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEe
Confidence 578899999996655543322222 2347899999999999999999999999999999999998
No 24
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=99.02 E-value=1.3e-09 Score=115.25 Aligned_cols=117 Identities=22% Similarity=0.330 Sum_probs=98.0
Q ss_pred eeeeeeeEEEEec-CCC-----CCCcEEEEEeccCCcCC------CCCCCchHHHHHHHHHHHHHHhHH-cCCCCCCcEE
Q 005347 320 VMATIQNVIGIIP-GTE-----EPDRLVILGNHRDAWTF------GAVDPNSGTAALLEVAQRLNKLQK-RGWKPRRTIV 386 (701)
Q Consensus 320 ~~~~~~NVia~i~-G~~-----~~~~~Ivl~aH~Ds~~~------GA~DnasG~A~lLElAr~l~~~~~-~g~~p~rtI~ 386 (701)
...++.||.|++. |-. +.-++|+|.||||+.+. ||+-|+||+.+|||+||.|+++.. ..-++++++.
T Consensus 189 ~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLl 268 (555)
T KOG2526|consen 189 PSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLL 268 (555)
T ss_pred CCCccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEE
Confidence 3467889999998 432 23589999999999753 999999999999999999999974 2357899999
Q ss_pred EEeeCcccCCCcchHHHHHHHHHhhhccEEEEEEecCcccC-Cccc--cccCh
Q 005347 387 LCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVHE-AGFH--ASATP 436 (701)
Q Consensus 387 F~~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g~g-~~~~--~~~~p 436 (701)
|++.+|.-+++.|++.|++--...+.+++-..|.+|.+|.+ +.+. ++-.|
T Consensus 269 F~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP 321 (555)
T KOG2526|consen 269 FILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPP 321 (555)
T ss_pred EEEccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCC
Confidence 99999999999999999997777788899999999999998 5543 44445
No 25
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.91 E-value=3.4e-09 Score=101.10 Aligned_cols=58 Identities=33% Similarity=0.429 Sum_probs=47.8
Q ss_pred ceEeeEEEecCCCh------hchHHHHhcCCcccceEEEEEeCCCc-------------------hhhHHHHHHHcCCeE
Q 005347 142 TVIGPVVYVNYGRV------EDYVTLKEMVVNVTGTVVLARYGQIF-------------------RGDIVHNAFEAGAAG 196 (701)
Q Consensus 142 ~v~g~lVyv~~G~~------~D~~~L~~~gv~v~GkIvlv~~g~~~-------------------~~~k~~~A~~~GA~g 196 (701)
.++++|||||||.. +||+ |+||+|||||+..+.+. ...|...|.++||+|
T Consensus 21 ~~~~elVFvGyGi~ape~~~dDy~-----g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~g 95 (157)
T cd04821 21 LKDSPLVFVGYGIVAPEYGWDDYK-----GLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAG 95 (157)
T ss_pred cccCCEEEeccCccCcccCccccc-----CCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeE
Confidence 46899999999975 3666 99999999999865531 124999999999999
Q ss_pred EEEEeCCC
Q 005347 197 ALIFTDRK 204 (701)
Q Consensus 197 vi~~~dp~ 204 (701)
||+++++.
T Consensus 96 vi~v~~~~ 103 (157)
T cd04821 96 ALIVHETE 103 (157)
T ss_pred EEEEeCCC
Confidence 99999864
No 26
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.91 E-value=6.6e-09 Score=95.80 Aligned_cols=98 Identities=36% Similarity=0.544 Sum_probs=75.0
Q ss_pred CCCcceEeeEEEecCCChhchHHHHhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCCCCCCCCCCCCCCCC
Q 005347 138 AKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFP 217 (701)
Q Consensus 138 S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP 217 (701)
.+.|.++++++++++|.+ |+. +.+++||||||+.|.|.+..|+.+|+++||+|+|+++++.....
T Consensus 21 ~~~~~~~~~~~~C~~~~~-~~~-----~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~--------- 85 (126)
T cd00538 21 SPVGVVAGPLVGCGYGTT-DDS-----GADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGP--------- 85 (126)
T ss_pred CCccccccceEEEecCcc-ccc-----CCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCccc---------
Confidence 456788999999999987 554 67899999999999998889999999999999999987532100
Q ss_pred CCCCCCCCCceecceecCCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhCC
Q 005347 218 DDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (701)
Q Consensus 218 ~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~g 286 (701)
.... .+++ .....||++.|+.+++++|++.+..
T Consensus 86 ----------~~~~----~~~~----------------------~~~~~iP~~~is~~~g~~l~~~~~~ 118 (126)
T cd00538 86 ----------QMGS----VGLE----------------------STDPSIPTVGISYADGEALLSLLEA 118 (126)
T ss_pred ----------cccc----ccCC----------------------CCCCcEeEEEeCHHHHHHHHHHHhc
Confidence 0000 0110 0134699999999999999999853
No 27
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=98.82 E-value=1.2e-08 Score=113.53 Aligned_cols=81 Identities=26% Similarity=0.341 Sum_probs=72.1
Q ss_pred eeeeeEEEEecCCCCCCcEEEEEeccCCcCC-CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCC----
Q 005347 322 ATIQNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYG---- 396 (701)
Q Consensus 322 ~~~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~G---- 396 (701)
..+.|++|+++|..+..+.|++|+|+|+++. |..|+..|+++.||++|.|.+ .|.+|+|+|.+++|..||-+
T Consensus 53 D~~gN~~~~~~g~~~~~~~i~~gsHlDtv~~gG~~dg~~Gv~~~le~~~~l~~---~~~~~~~~i~vi~~~~EEg~rf~~ 129 (406)
T TIGR03176 53 DDVGNLYGRLVGTEFPEETILTGSHIDTVVNGGNLDGQFGALAAWLAVDYLKE---KYGAPLRTVEVLSMAEEEGSRFPY 129 (406)
T ss_pred cCCCcEEEEecCCCCCCCeEEEeccccCCCCCCccCchhhHHHHHHHHHHHHH---cCCCCCCCeEEEEeccccCccCCc
Confidence 4558999999998755689999999999998 889999999999999998875 46799999999999999965
Q ss_pred -CcchHHHHH
Q 005347 397 -LIGSTEWVE 405 (701)
Q Consensus 397 -l~GS~~~~~ 405 (701)
++||+.|.-
T Consensus 130 ~~~Gs~~~~g 139 (406)
T TIGR03176 130 VFWGSKNIFG 139 (406)
T ss_pred ccccHHHHhC
Confidence 999999874
No 28
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=98.81 E-value=5.2e-08 Score=99.46 Aligned_cols=156 Identities=23% Similarity=0.263 Sum_probs=107.7
Q ss_pred ecCCCCCCcEEEEEeccCCcCCCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHHHHHHh
Q 005347 331 IPGTEEPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREM 410 (701)
Q Consensus 331 i~G~~~~~~~Ivl~aH~Ds~~~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~ 410 (701)
++|.. ++.|++++|.+| +.-|+||.||.|++.-+|++|..+ +.+.+-+|++-. +.+||-.|+.++.+-
T Consensus 173 ~rg~~--~~eiLlst~lCH-PSmaNdn~SG~all~~lak~l~~~-----ktrysYRfvf~P----~TiGsi~wLsrnee~ 240 (435)
T COG4310 173 HRGTS--KDEILLSTYLCH-PSMANDNLSGLALLTFLAKALKSL-----KTRYSYRFVFAP----ETIGSIVWLSRNEEC 240 (435)
T ss_pred ccCCc--cceeeeeecccC-hhhccCccchHHHHHHHHHHHHhc-----cceeeEEEEecc----cccchhhhHhcchhH
Confidence 46764 677999999998 458999999999999999999876 568899999866 579999999999887
Q ss_pred hhccEEEEEEecCcccC--Cccc--cccChhHHHHHHHHHHHcCCCCCCcchhhhccccCCCCCccccCCCCCCchHhHH
Q 005347 411 LASRAVAYLNIDSAVHE--AGFH--ASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFI 486 (701)
Q Consensus 411 l~~~~va~iNlD~~g~g--~~~~--~~~~p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~SD~~~F~ 486 (701)
+ +++..-+-+-++|-| +++. ..+..+...+...+.+.- .++-...+. +. .|||-..|.
T Consensus 241 l-khvk~GlVlsClGD~g~~nykrtrrgna~iDki~~~tl~~~----~s~~~~~dF------------~p-~G~DERQf~ 302 (435)
T COG4310 241 L-KHVKHGLVLSCLGDGGGPNYKRTRRGNALIDKIALHTLKHC----GSNFKAADF------------LP-YGSDERQFC 302 (435)
T ss_pred H-hhhhcceEEEEecCCCCccceeccccchHHHHHHHHHHhcC----CcCceeeec------------cc-CCCchhhcc
Confidence 7 488887878888765 3322 234434444443333321 111112221 22 678888776
Q ss_pred hc-CCceEEEeeeC--CCCCcCCCCcccHHHHH
Q 005347 487 QH-IGVPVADMSFG--TGYPVYHSMYDDFIWME 516 (701)
Q Consensus 487 ~~-~GIPs~~~~~~--~~~~~yHT~~Dt~~~i~ 516 (701)
.- ...|+..+.-+ +.++-|||..|+++.|+
T Consensus 303 sPg~NLpvg~~~Rs~yG~f~~YHtSaDnL~fi~ 335 (435)
T COG4310 303 SPGFNLPVGGLQRSRYGDFDGYHTSADNLDFIS 335 (435)
T ss_pred CCCcCCchhhhhHhhcCCCccccCccccccccC
Confidence 51 13566655432 46889999999998774
No 29
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.72 E-value=5e-08 Score=90.31 Aligned_cols=100 Identities=18% Similarity=0.272 Sum_probs=69.3
Q ss_pred ceEeeEEEec--CCCh-hchHHHHhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCCCCCCCCCCCCCCCCC
Q 005347 142 TVIGPVVYVN--YGRV-EDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFPD 218 (701)
Q Consensus 142 ~v~g~lVyv~--~G~~-~D~~~L~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP~ 218 (701)
.+.|+||.+. +|+. .++ ..+++|||||++.|.|.+.+|+++|+++||+|||+|++....... ..+
T Consensus 16 ~~~g~l~~~~p~~gC~~~~~------~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~-----~~~- 83 (126)
T cd02126 16 AGVGRVVKAKPYRACSEITN------AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSD-----TAP- 83 (126)
T ss_pred CceEEEEeCCchhcccCCCC------ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCcccc-----ccc-
Confidence 4678999884 6653 222 347899999999999999999999999999999999764321000 000
Q ss_pred CCCCCCCCceecceecCCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhCC
Q 005347 219 DKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (701)
Q Consensus 219 ~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~g 286 (701)
| + .-.|++.+ .....||++.|+..++++|++.++.
T Consensus 84 --~----------~-~m~~~~~~--------------------~~~~~IP~v~I~~~dG~~L~~~l~~ 118 (126)
T cd02126 84 --M----------F-AMSGDGDS--------------------TDDVTIPVVFLFSKEGSKLLAAIKE 118 (126)
T ss_pred --e----------e-EeecCCCC--------------------CCCCeEEEEEEEHHHHHHHHHHHHh
Confidence 0 0 00122100 0135899999999999999999864
No 30
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.72 E-value=5.4e-08 Score=88.56 Aligned_cols=79 Identities=25% Similarity=0.241 Sum_probs=60.2
Q ss_pred hhchHHHHhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCceecceec
Q 005347 155 VEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFPDDKWMPPSGVQVGSVYD 234 (701)
Q Consensus 155 ~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP~~~~~p~~~v~rg~v~~ 234 (701)
.+||. ..+++|||+|+++|+|.+..|+.+|+++||+|||||++..... | .+ .
T Consensus 35 ~~~~~-----~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~---------~-------~~----~--- 86 (120)
T cd02129 35 ASDVP-----PGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVP---------P-------SG----N--- 86 (120)
T ss_pred ccccC-----ccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCC---------C-------CC----C---
Confidence 45664 4589999999999999999999999999999999998742100 0 00 0
Q ss_pred CCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhC
Q 005347 235 GTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIG 285 (701)
Q Consensus 235 ~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~ 285 (701)
.|++ ....||++.|++++++.|++.++
T Consensus 87 -~~~~-----------------------~~v~IP~v~Is~~dG~~i~~~l~ 113 (120)
T cd02129 87 -RSEY-----------------------EKIDIPVALLSYKDMLDIQQTFG 113 (120)
T ss_pred -CCCC-----------------------cCCcccEEEEeHHHHHHHHHHhc
Confidence 0110 13489999999999999999875
No 31
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=98.65 E-value=9.5e-08 Score=106.15 Aligned_cols=81 Identities=32% Similarity=0.400 Sum_probs=70.5
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcCC-CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccC-----CC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEY-----GL 397 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~-----Gl 397 (701)
..||+|+++|...+.+.|++++|+|+++. |..|+..|++++|++++.|.+ .|.+|+++|.|++|..||. |+
T Consensus 53 ~~nl~a~~~g~~~~~~~l~~~~H~DtV~~gg~~dg~~gvaa~l~a~~~l~~---~g~~~~~~i~~~~~~dEE~~~f~~~~ 129 (401)
T TIGR01879 53 VGNLIGRKEGTEPPLEVVLSGSHIDTVVNGGNFDGQLGVLAGIEVVDALKE---AYVVPLHPIEVVAFTEEEGSRFPYGM 129 (401)
T ss_pred CCcEEEEecCCCCCCCEEEEecccccCCCCCccCCHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEEeCCcCcCccccc
Confidence 36999999987543589999999999987 889999999999999998765 5678999999999999996 78
Q ss_pred cchHHHHHHH
Q 005347 398 IGSTEWVEEN 407 (701)
Q Consensus 398 ~GS~~~~~~~ 407 (701)
.||..|+.+.
T Consensus 130 ~Gs~~~~~~~ 139 (401)
T TIGR01879 130 WGSRNMVGLA 139 (401)
T ss_pred ccHHHHhccc
Confidence 9999987643
No 32
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=98.63 E-value=8.1e-08 Score=111.55 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=72.4
Q ss_pred eeeeeEEEEecCCCCCCcEEEEEeccCCcCC-CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccC-----
Q 005347 322 ATIQNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEY----- 395 (701)
Q Consensus 322 ~~~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~----- 395 (701)
..+.||+|+++|.+...+.|++|+|+|+++. |..|+..|+++.||++|.|.+ .|.+|+++|.|+.|.+||-
T Consensus 235 D~~gNv~~~~~g~~~~~p~v~~gSHlDTV~~gG~~DG~~Gv~a~l~~~~~l~~---~~~~~~~~i~vi~~~~EEg~rF~~ 311 (591)
T PRK13799 235 DAVGNVVGRYKAADDDAKTLITGSHYDTVRNGGKYDGREGIFLAIACVKELHE---QGERLPFHFEVIAFAEEEGQRFKA 311 (591)
T ss_pred CCCCCEEEEcCCCCCCCCeEEEeccccccCCCCccccHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEecCCCccCCCc
Confidence 4569999999997655689999999999987 999999999999999998875 5789999999999999996
Q ss_pred CCcchHHHHH
Q 005347 396 GLIGSTEWVE 405 (701)
Q Consensus 396 Gl~GS~~~~~ 405 (701)
+++||+.|+-
T Consensus 312 ~~~GS~~~~G 321 (591)
T PRK13799 312 TFLGSGALIG 321 (591)
T ss_pred cccchHHHhC
Confidence 7999999874
No 33
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.60 E-value=2.9e-07 Score=86.76 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=68.7
Q ss_pred CcceEeeEEEec--CCChhchHHHHhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCCCCCCCCCCCCCCCC
Q 005347 140 SGTVIGPVVYVN--YGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFP 217 (701)
Q Consensus 140 ~G~v~g~lVyv~--~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP 217 (701)
.+.+++++|.++ .|+.. + ..+++|||||++.|.|.+..|+.+|+++||+|||+|++.... ++
T Consensus 35 ~~~~~~~lv~~~~~~gC~~-~------~~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~---------~~ 98 (139)
T cd02132 35 DNANKTRAVLANPLDCCSP-S------TSKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEEL---------YK 98 (139)
T ss_pred cCccEEEEEECCcccccCC-C------CcccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcc---------cc
Confidence 356789999875 55543 1 137999999999999999999999999999999999763210 00
Q ss_pred CCCCCCCCCceecceecCCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhCC
Q 005347 218 DDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (701)
Q Consensus 218 ~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~g 286 (701)
. . +|+... .....||++.|+++++++|++.+..
T Consensus 99 ~-----------------~------~~~~~~-------------~~~~~IP~v~Is~~~G~~L~~~l~~ 131 (139)
T cd02132 99 M-----------------V------CEDNDT-------------SLNISIPVVMIPQSAGDALNKSLDQ 131 (139)
T ss_pred c-----------------c------cCCCCC-------------CCCCcEeEEEecHHHHHHHHHHHHc
Confidence 0 0 000000 1135799999999999999999863
No 34
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=98.59 E-value=1.4e-07 Score=109.73 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=70.4
Q ss_pred eeeeeEEEEecCCCCCCcEEEEEeccCCcCC-CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccC-----
Q 005347 322 ATIQNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEY----- 395 (701)
Q Consensus 322 ~~~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~----- 395 (701)
..+.||+|+++|..+..+.|++++|+|+++. |..|+..|++++||++|.|.+ .|.+|+++|.|++|.+||.
T Consensus 235 D~~GNl~~~~~g~~~~~~~v~~gsHlDTV~~gG~~DG~~Gv~a~lea~~~l~~---~~~~~~~~i~vv~~~~EEg~rF~~ 311 (591)
T PRK13590 235 DAVGNVVGRYKGSTPQAKRLLTGSHYDTVRNGGKYDGRLGIFVPMACVRELHR---QGRRLPFGLEVVGFAEEEGQRYKA 311 (591)
T ss_pred CCCCCEEEEecCCCCCCCeEEEecccccCCCCCCcccHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEecCCccccCCc
Confidence 3559999999997643478999999999988 889999999999999998875 5678889999999999996
Q ss_pred CCcchHHHHH
Q 005347 396 GLIGSTEWVE 405 (701)
Q Consensus 396 Gl~GS~~~~~ 405 (701)
+++||..|.-
T Consensus 312 ~~~GS~~~~G 321 (591)
T PRK13590 312 TFLGSGALIG 321 (591)
T ss_pred cccchHHHhC
Confidence 5999998654
No 35
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.47 E-value=7.4e-07 Score=85.32 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=70.9
Q ss_pred CCcceEeeEEEec--CCCh-hchHHHHhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCCCCCCCCCCCCCC
Q 005347 139 KSGTVIGPVVYVN--YGRV-EDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARW 215 (701)
Q Consensus 139 ~~G~v~g~lVyv~--~G~~-~D~~~L~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~ 215 (701)
+++.++|.|+++. .|+. .++.- ....++.|||||++.|.|.+..|+++|+++||+|||+|++..+..
T Consensus 36 ~~~~~~g~lv~~~p~~gC~~~~~~~--~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~-------- 105 (153)
T cd02123 36 PGSGLKGVLVVAEPLNACSPIENPP--LNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDL-------- 105 (153)
T ss_pred CCCceEEEEEeCCccccCCCCcccc--cccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcc--------
Confidence 3567999999873 3443 22210 013689999999999999999999999999999999998632110
Q ss_pred CCCCCCCCCCCceecceecCCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhCC
Q 005347 216 FPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (701)
Q Consensus 216 yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~g 286 (701)
++ + .|+.. . .....||++.|+.++++.|++.++.
T Consensus 106 ~~--------------m---~~~~~-~-------------------~~~v~IP~v~Is~~dg~~L~~~l~~ 139 (153)
T cd02123 106 IS--------------M---SGNDQ-E-------------------IKGIDIPSVFVGKSTGEILKKYASY 139 (153)
T ss_pred ee--------------c---cCCCC-C-------------------CcCCEEEEEEeeHHHHHHHHHHHhc
Confidence 00 0 01110 0 0135899999999999999988854
No 36
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.46 E-value=9.7e-07 Score=82.89 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=70.5
Q ss_pred cccc-CCCcceEeeEEEec-----CCChh-chHHHHhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCCCCC
Q 005347 134 FHGY-AKSGTVIGPVVYVN-----YGRVE-DYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDY 206 (701)
Q Consensus 134 ~~a~-S~~G~v~g~lVyv~-----~G~~~-D~~~L~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~ 206 (701)
.+++ ++..++.|-||... .|+.. +.. ....+++|+||||+.|.|.+..|+.+|+++||+|||+|++...
T Consensus 21 ~fg~~~~~~~~~G~l~~~~~~~~~~gC~~~~~~---~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~- 96 (138)
T cd02122 21 RYGEHSPKEEAKGLVVVPDPPNDHYGCDPDTRF---PIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGT- 96 (138)
T ss_pred ccCCCCCCCccEEEEecCCCCCCcCCCCCCccc---cCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCC-
Confidence 3444 67778899876432 33321 110 0124789999999999999999999999999999999986421
Q ss_pred CCCCCCCCCCCCCCCCCCCCceecceecCCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhCC
Q 005347 207 GGGSDDARWFPDDKWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (701)
Q Consensus 207 ~~~~~~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~g 286 (701)
+. . .+ ..+. .....||++.|+..+|+.|++.+..
T Consensus 97 ~~-----------------~----~~--~m~~-----------------------~~~~~ip~v~Is~~~G~~l~~~l~~ 130 (138)
T cd02122 97 GN-----------------E----TV--KMSH-----------------------PGTGDIVAIMITNPKGMEILELLER 130 (138)
T ss_pred CC-----------------c----ee--eccC-----------------------CCCCcceEEEEcHHHHHHHHHHHHc
Confidence 00 0 00 0011 0123689999999999999999853
No 37
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.40 E-value=5.8e-06 Score=81.33 Aligned_cols=143 Identities=27% Similarity=0.310 Sum_probs=96.7
Q ss_pred EEEeccCCcC---------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCc-c
Q 005347 342 ILGNHRDAWT---------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLI-G 399 (701)
Q Consensus 342 vl~aH~Ds~~---------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~-G 399 (701)
++.+|+|+++ .|+.|+..|++++|.+++.|.+ .+.+++++|+|++...||.|.. |
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~---~~~~~~~~i~~~~~~~EE~g~~~g 77 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKE---SGDDLPGNIIFLFTPDEEIGSIGG 77 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHH---TTTTCSSEEEEEEESTCCGTSTTH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHh---ccccccccccccccccccCCCcch
Confidence 5788999887 2999999999999999998875 3458999999999999999988 9
Q ss_pred hHHHHHHHHHhhhccEEEEEEecCcccC-Cc-cc---cccChhHHHHHHHHHHHcCCCCCCcchhhhccccCCCCCcccc
Q 005347 400 STEWVEENREMLASRAVAYLNIDSAVHE-AG-FH---ASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGR 474 (701)
Q Consensus 400 S~~~~~~~~~~l~~~~va~iNlD~~g~g-~~-~~---~~~~p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~ 474 (701)
+.+++++. +...+..|.+..+ +. .. ...++.+.+.+.++.+.+.. . ......
T Consensus 78 ~~~l~~~~-------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------------~~~~~~ 134 (189)
T PF01546_consen 78 AKHLLEEG-------AFFGLHPDYVIIGEPTGKGGVGSDNDPPLVQALQAAAQEVGG--E--------------PPEPVA 134 (189)
T ss_dssp HHHHHHHC-------EEEEEEESEEEECECETTSEEEHCTCHHHHHHHHHHHHHTTS--S--------------EEEEEE
T ss_pred hhhhhhhc-------ccccccccccccccccccccccccccHHHHHHHHHHHHHHhh--c--------------cccccc
Confidence 99888763 3334445544332 11 11 22445566677777765432 0 011233
Q ss_pred CCCCCCchHhHHh--cCCceEEEeeeCCCCCcCCCCcccHH
Q 005347 475 LGGGGSDYAAFIQ--HIGVPVADMSFGTGYPVYHSMYDDFI 513 (701)
Q Consensus 475 ~~~~~SD~~~F~~--~~GIPs~~~~~~~~~~~yHT~~Dt~~ 513 (701)
.+ .++|...|.. ..|+|++.+..+. ...|++...++
T Consensus 135 ~~-g~tD~~~~~~~~~~~~~~i~~G~~~--~~~H~~~E~i~ 172 (189)
T PF01546_consen 135 SG-GGTDAGFLAEVKGLGIPAIGFGPGG--SNAHTPDEYID 172 (189)
T ss_dssp ES-SSSTHHHHHCHHHTTEEEEEEESCE--ESTTSTT-EEE
T ss_pred ee-ccccchhhhhhhccccceeeeCCCC--CCCCCCCcEec
Confidence 33 7789877773 4799999887543 56788776543
No 38
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.39 E-value=1.5e-06 Score=79.40 Aligned_cols=95 Identities=21% Similarity=0.183 Sum_probs=66.1
Q ss_pred eEeeEEEec--CCChh-chHHHHhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCCCCCCCCCCCCCCCCCC
Q 005347 143 VIGPVVYVN--YGRVE-DYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFPDD 219 (701)
Q Consensus 143 v~g~lVyv~--~G~~~-D~~~L~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP~~ 219 (701)
+.|+||.+. .|+.. ++ ..+++|||||+++|.|.+..|+.+|+++||+|||+|++..+... +
T Consensus 11 ~~~~lv~~~p~~gC~~~~~------~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~--------~-- 74 (118)
T cd02127 11 KHVPLVPADPLEACEELRN------IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDE--------Y-- 74 (118)
T ss_pred cceEEEECCccccCCCCCC------ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccc--------c--
Confidence 446777764 45432 22 34789999999999999999999999999999999976422100 0
Q ss_pred CCCCCCCceecceecCCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhCC
Q 005347 220 KWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (701)
Q Consensus 220 ~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~g 286 (701)
.+. + .++.. .....||++.|+.++++.|++.+..
T Consensus 75 ------~~~----m--~~~~~---------------------~~~i~IP~v~Is~~dG~~L~~~l~~ 108 (118)
T cd02127 75 ------YVE----M--IQDDS---------------------SRRADIPAAFLLGKNGYMIRKTLER 108 (118)
T ss_pred ------ceE----e--cCCCC---------------------CCCceEEEEEecHHHHHHHHHHHHc
Confidence 000 0 01100 1235899999999999999998864
No 39
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=98.39 E-value=1.1e-06 Score=98.03 Aligned_cols=80 Identities=28% Similarity=0.388 Sum_probs=68.2
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcCC-CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccC-----CC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEY-----GL 397 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~-----Gl 397 (701)
..|++|+++|...+.+.|++++|+|+++. |+.|+.+|+|++|++++.|.+ .+.+|+++|.|+++.+||. |+
T Consensus 60 ~~nlia~~~g~~~~~~~l~~~~H~DtVp~~g~~D~~~g~aa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~~~~~~~~ 136 (414)
T PRK12890 60 AGNLFGRLPGRDPDLPPLMTGSHLDTVPNGGRYDGILGVLAGLEVVAALRE---AGIRPPHPLEVIAFTNEEGVRFGPSM 136 (414)
T ss_pred CCcEEEEeCCCCCCCCEEEEeCcccCCCCCCCcCCHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEEecccccccCCcc
Confidence 35999999886434578999999999987 779999999999999998864 4557889999999999997 67
Q ss_pred cchHHHHHH
Q 005347 398 IGSTEWVEE 406 (701)
Q Consensus 398 ~GS~~~~~~ 406 (701)
.||..+...
T Consensus 137 ~G~~~~~~~ 145 (414)
T PRK12890 137 IGSRALAGT 145 (414)
T ss_pred ccHHHHHcc
Confidence 899887654
No 40
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=98.33 E-value=1.7e-06 Score=96.55 Aligned_cols=77 Identities=27% Similarity=0.402 Sum_probs=66.6
Q ss_pred eeEEEEecCCCCCCcEEEEEeccCCcCC-CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCC-----Cc
Q 005347 325 QNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYG-----LI 398 (701)
Q Consensus 325 ~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~G-----l~ 398 (701)
.||+++++|.....+.|++++|+|+++. |..|..+|++++|++++.|.+ .|.+|+++|.|++|..||.| +.
T Consensus 63 gNl~a~~~g~~~~~~~l~~~~H~DtVp~gg~~D~k~Gv~a~l~a~~~l~~---~~~~~~~~i~v~~~~dEE~~~f~~~~~ 139 (414)
T PRK12891 63 GNLFARRAGRDPDAAPVMTGSHADSQPTGGRYDGIYGVLGGLEVVRALND---AGIETERPVDVVIWTNEEGSRFAPSMV 139 (414)
T ss_pred CCEEEEecCCCCCCCeEEEEecccCCCCCccccchhhHHHHHHHHHHHHH---cCCCCCCCeEEEEecccccCcCCcccc
Confidence 5999999987543578999999999987 778999999999999999875 46688999999999999975 67
Q ss_pred chHHHH
Q 005347 399 GSTEWV 404 (701)
Q Consensus 399 GS~~~~ 404 (701)
||..+.
T Consensus 140 Gs~~~~ 145 (414)
T PRK12891 140 GSGVFF 145 (414)
T ss_pred cHHHHh
Confidence 998664
No 41
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.33 E-value=4.6e-06 Score=77.22 Aligned_cols=62 Identities=29% Similarity=0.275 Sum_probs=45.8
Q ss_pred cceEeeEEEec---CCCh---hchHHHHhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCC
Q 005347 141 GTVIGPVVYVN---YGRV---EDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDR 203 (701)
Q Consensus 141 G~v~g~lVyv~---~G~~---~D~~~L~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp 203 (701)
+.++|.|+|.- .|+. ++.. =++......+||||++.|.|.+..|+.+|+++||+|||+|++.
T Consensus 9 ~~~~G~l~~~~~~~~gC~~~~~~~~-~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~ 76 (127)
T cd02125 9 GTLTGVVVYPKENRTGCKEFDVFFK-PKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNV 76 (127)
T ss_pred CeeEEEEEecCCccccCCCCccccc-ccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECC
Confidence 46889999983 3442 1110 0001224789999999999999999999999999999999763
No 42
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.29 E-value=2.4e-06 Score=77.92 Aligned_cols=38 Identities=26% Similarity=0.193 Sum_probs=35.5
Q ss_pred CcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCC
Q 005347 166 VNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDR 203 (701)
Q Consensus 166 v~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp 203 (701)
.+++||||||+.|.|.+..|+.+|+++||+|||+|++.
T Consensus 36 ~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~ 73 (117)
T cd04813 36 AEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDE 73 (117)
T ss_pred CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECC
Confidence 48999999999999999999999999999999999763
No 43
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=98.25 E-value=2.4e-05 Score=84.89 Aligned_cols=147 Identities=19% Similarity=0.209 Sum_probs=96.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHHHHHHhhhccEEEEEEecCcc-------
Q 005347 353 GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAV------- 425 (701)
Q Consensus 353 GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g------- 425 (701)
-|-||-.|+++|+|++|.+.+. ++..+|.|++..-||.|+.|+..-+.... .+ ..|-+|+.-
T Consensus 175 kalDdR~g~a~l~e~l~~l~~~-----~~~~~l~~~~tvqEEvG~rGA~~aa~~i~----pD--~aI~vDv~~~~d~~~~ 243 (350)
T TIGR03107 175 KAWDNRYGVLMILELLESLKDQ-----ELPNTLIAGANVQEEVGLRGAHVSTTKFN----PD--IFFAVDCSPAGDIYGD 243 (350)
T ss_pred eccccHHHHHHHHHHHHHhhhc-----CCCceEEEEEEChhhcCchhhhhHHhhCC----CC--EEEEEecCCcCCCCCC
Confidence 4889999999999999988642 57789999999999999999985333221 22 456667542
Q ss_pred ------cCCcc-----ccccChhHHHHHHHHHHHcCCCCCCcchhhhccccCCCCCccccCCCCCCchHh--HHhcCCce
Q 005347 426 ------HEAGF-----HASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAA--FIQHIGVP 492 (701)
Q Consensus 426 ------~g~~~-----~~~~~p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~SD~~~--F~~~~GIP 492 (701)
.|+.+ ..-.+|.+.+.+.+.+++..-|.. ....+ +|+|-.. |.. .|||
T Consensus 244 ~~~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q-----------------~~~~~-gGtDa~~~~~~~-~Gvp 304 (350)
T TIGR03107 244 QGGKLGEGTLLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQ-----------------YYVAK-GGTDAGAAHLKN-SGVP 304 (350)
T ss_pred CccccCCCceEEEecCCCCCCHHHHHHHHHHHHHcCCCcE-----------------EecCC-CCchHHHHHHhC-CCCc
Confidence 23333 223457788888888886544322 11122 5777763 443 6999
Q ss_pred EEEeeeCCCCCcCCCCcccHHHHHhhCCCchHHHHHHHHHHHHHHHHh
Q 005347 493 VADMSFGTGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQL 540 (701)
Q Consensus 493 s~~~~~~~~~~~yHT~~Dt~~~i~~~~dp~~~~~~~~a~~~~~l~~~L 540 (701)
++.++- +..+-||+.-..+.- | ..+.++++..++..|
T Consensus 305 t~~i~i--p~Ry~Hs~~e~i~~~------D---~~~~~~Ll~~~i~~l 341 (350)
T TIGR03107 305 STTIGV--CARYIHSHQTLYSID------D---FLAAQAFLQAIVKKL 341 (350)
T ss_pred EEEEcc--CcccccChhheeeHH------H---HHHHHHHHHHHHHhc
Confidence 999875 455679988776432 1 234556666665544
No 44
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.24 E-value=7.1e-06 Score=75.06 Aligned_cols=92 Identities=20% Similarity=0.239 Sum_probs=64.6
Q ss_pred ceEeeEEEec--CCChhchHHHHhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCCCCCCCCCCCCCCCCCC
Q 005347 142 TVIGPVVYVN--YGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFPDD 219 (701)
Q Consensus 142 ~v~g~lVyv~--~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP~~ 219 (701)
.+.|++|... .++ ++.. ...+++||||||+.+.|.+..|+.+|+++||+|+|+|++.....
T Consensus 16 ~~~~~~~~~~~~~~C-~~~~----~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~------------ 78 (118)
T cd04818 16 VVLAGAAPASNTDGC-TAFT----NAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGA------------ 78 (118)
T ss_pred ceeEEEecCCccccc-CCCC----cCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCc------------
Confidence 3778888663 222 1111 13479999999999988888999999999999999998643100
Q ss_pred CCCCCCCceecceecCCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhC
Q 005347 220 KWMPPSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIG 285 (701)
Q Consensus 220 ~~~p~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~ 285 (701)
.+ .++++ .....||++.|++++++.|++.+.
T Consensus 79 ------~~-------~~~~~----------------------~~~~~iP~v~V~~~~g~~l~~~l~ 109 (118)
T cd04818 79 ------PI-------TMGGD----------------------DPDITIPAVMISQADGDALKAALA 109 (118)
T ss_pred ------ce-------eccCC----------------------CCCCEEeEEEecHHHHHHHHHHHh
Confidence 00 01111 012369999999999999999986
No 45
>PRK09961 exoaminopeptidase; Provisional
Probab=98.15 E-value=3e-05 Score=84.26 Aligned_cols=148 Identities=19% Similarity=0.167 Sum_probs=96.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHHHHHHhhhccEEEEEEecCccc------
Q 005347 353 GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVH------ 426 (701)
Q Consensus 353 GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g~------ 426 (701)
-|.||-.|+++++|++|.+++. ++..+|.|+++.-||.|+.|++.-..... .. ..|-+|+...
T Consensus 163 kalDnR~g~~~lle~l~~l~~~-----~~~~~v~~~~tvqEEvG~rGa~~aa~~i~----pd--~~I~vDv~~~~d~~~~ 231 (344)
T PRK09961 163 KAFDDRLGCYLLVTLLRELHDA-----ELPAEVWLVASSSEEVGLRGGQTATRAVS----PD--VAIVLDTACWAKNFDY 231 (344)
T ss_pred eechhhHhHHHHHHHHHHhhhc-----CCCceEEEEEEcccccchHHHHHHHhccC----CC--EEEEEeccCCCCCCCC
Confidence 7899999999999999988642 56799999999999999999986443322 22 3566775532
Q ss_pred ----------CCcc-----ccccChhHHHHHHHHHHHcCCCCCCcchhhhccccCCCCCccc-cCCCCCCchHhHHh-cC
Q 005347 427 ----------EAGF-----HASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIG-RLGGGGSDYAAFIQ-HI 489 (701)
Q Consensus 427 ----------g~~~-----~~~~~p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~SD~~~F~~-~~ 489 (701)
|+.+ ..-.+|.+.+.+.+++++..-|.. .. ..+ +|||-..|.. ..
T Consensus 232 ~~~~~~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q-----------------~~~~~g-gGTDa~~~~~~~~ 293 (344)
T PRK09961 232 GAANHRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGIPLQ-----------------ADMFSN-GGTDGGAVHLTGT 293 (344)
T ss_pred CCCcccccCCCceEEEccCCcCCCHHHHHHHHHHHHHcCCCcE-----------------EEecCC-CcchHHHHHHhCC
Confidence 2222 123356777788888876543321 11 123 5799988764 25
Q ss_pred CceEEEeeeCCCCCcCCCCcccHHHHHhhCCCchHHHHHHHHHHHHHHHHh
Q 005347 490 GVPVADMSFGTGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQL 540 (701)
Q Consensus 490 GIPs~~~~~~~~~~~yHT~~Dt~~~i~~~~dp~~~~~~~~a~~~~~l~~~L 540 (701)
|||++.++.. ..+-||+....+.= -..++++++..++..|
T Consensus 294 Giptv~ig~p--~ry~Hs~~E~v~~~---------D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 294 GVPTVVMGPA--TRHGHCAASIADCR---------DILQMIQLLSALIQRL 333 (344)
T ss_pred CCCEEEechh--hhcccChhheEEHH---------HHHHHHHHHHHHHHHc
Confidence 9999998763 22458877665421 1234555665555443
No 46
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=98.14 E-value=6.2e-06 Score=91.97 Aligned_cols=80 Identities=33% Similarity=0.500 Sum_probs=67.8
Q ss_pred eeEEEEecCCCCCCcEEEEEeccCCcCC-CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCC-----Cc
Q 005347 325 QNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYG-----LI 398 (701)
Q Consensus 325 ~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~G-----l~ 398 (701)
.||+++++|..++.+.|++.+|+|+++. |..|+-+|++++|.+++.|.+ .+.+++++|+|+++.+||.| +.
T Consensus 63 ~n~~a~~~g~~~~~~~l~l~~H~DtVp~~g~~dgk~gvaa~l~a~~~l~~---~~~~~~~~v~~~~~~dEE~g~~~~~~~ 139 (412)
T PRK12893 63 GNLFGRRAGTDPDAPPVLIGSHLDTQPTGGRFDGALGVLAALEVVRTLND---AGIRTRRPIEVVSWTNEEGARFAPAML 139 (412)
T ss_pred CcEEEEeCCCCCCCCEEEEEecccCCCCCCcccchhhHHHHHHHHHHHHH---cCCCCCCCeEEEEEccccccccccccc
Confidence 4999999886533578999999999886 678999999999999998865 45678899999999999986 88
Q ss_pred chHHHHHHH
Q 005347 399 GSTEWVEEN 407 (701)
Q Consensus 399 GS~~~~~~~ 407 (701)
||..+...+
T Consensus 140 G~~~~~~~~ 148 (412)
T PRK12893 140 GSGVFTGAL 148 (412)
T ss_pred cHHHHhCcC
Confidence 998877543
No 47
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=98.13 E-value=8.8e-06 Score=90.80 Aligned_cols=81 Identities=31% Similarity=0.480 Sum_probs=67.6
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcCC-CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccC-----CC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEY-----GL 397 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~-----Gl 397 (701)
..||+++++|...+.+.|++.+|+|+++. |..|+-+|+|++|.+++.|.+ .+.+|+++|.|++...||. |+
T Consensus 59 ~~nl~a~~~g~~~~~~~l~l~gH~DtVp~~g~~d~k~g~aa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~g~~g~~~ 135 (413)
T PRK09290 59 VGNLFGRLEGRDPDAPAVLTGSHLDTVPNGGRFDGPLGVLAGLEAVRTLNE---RGIRPRRPIEVVAFTNEEGSRFGPAM 135 (413)
T ss_pred CCcEEEEecCCCCCCCEEEEecCccCCCCCCCcCCHHHHHHHHHHHHHHHH---cCCCCCCCeEEEEEcCCccccccCcc
Confidence 36999999875423578999999999987 778999999999999998764 4667889999999999998 57
Q ss_pred cchHHHHHHH
Q 005347 398 IGSTEWVEEN 407 (701)
Q Consensus 398 ~GS~~~~~~~ 407 (701)
.|+..+++++
T Consensus 136 ~G~~~~~~~~ 145 (413)
T PRK09290 136 LGSRVFTGAL 145 (413)
T ss_pred ccHHHHHccc
Confidence 8998887553
No 48
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=98.10 E-value=1.2e-05 Score=89.62 Aligned_cols=79 Identities=33% Similarity=0.559 Sum_probs=67.3
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcCC-CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccC-----CC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEY-----GL 397 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~-----Gl 397 (701)
..|++++++|... .+.|++++|+|+++. |-.|+-.|+|++|++++.|.+ .|++|+++|.|+++..||. |+
T Consensus 61 ~~nl~a~~~g~~~-~~~l~l~gH~DtVp~~g~~dg~~Gvaa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~~~~~~~~ 136 (412)
T PRK12892 61 IGNVFGRLPGPGP-GPALLVGSHLDSQNLGGRYDGALGVVAGLEAARALNE---HGIATRHPLDVVAWCDEEGSRFTPGF 136 (412)
T ss_pred CCcEEEEecCCCC-CCeEEEEccccCCCCCCcccchHHHHHHHHHHHHHHH---cCCCCCCCeEEEEecCcccccccCcc
Confidence 3599999998653 478999999999987 667888899999999998764 5678899999999999997 57
Q ss_pred cchHHHHHH
Q 005347 398 IGSTEWVEE 406 (701)
Q Consensus 398 ~GS~~~~~~ 406 (701)
.||..++++
T Consensus 137 ~Gs~~~~~~ 145 (412)
T PRK12892 137 LGSRAYAGR 145 (412)
T ss_pred ccHHHHHcC
Confidence 899998864
No 49
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=98.07 E-value=6.6e-05 Score=80.84 Aligned_cols=151 Identities=23% Similarity=0.219 Sum_probs=100.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHHHHHHhhhccEEEEEEecCcccCCc---
Q 005347 353 GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVHEAG--- 429 (701)
Q Consensus 353 GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g~g~~--- 429 (701)
=|-||-.||++|||++|.|. +..+..++.|++..-||.|+.|+.....+..+ ...|.+|..+.+..
T Consensus 177 kalDdR~gva~lle~lk~l~-----~~~~~~~vy~v~tvqEEVGlrGA~~~a~~i~p------d~aiavd~~~~~d~~~~ 245 (355)
T COG1363 177 KALDDRAGVAALLELLKELK-----GIELPADVYFVASVQEEVGLRGAKTSAFRIKP------DIAIAVDVTPAGDTPGV 245 (355)
T ss_pred eeccchHhHHHHHHHHHHhc-----cCCCCceEEEEEecchhhccchhhccccccCC------CEEEEEecccccCCCCC
Confidence 47899999999999999883 12688999999999999999999876554322 24566777655422
Q ss_pred ------------cc-----cccChhHHHHHHHHHHHcCCCCCCcchhhhccccCCCCCccccCCCCCCchHhHHhc-CCc
Q 005347 430 ------------FH-----ASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQH-IGV 491 (701)
Q Consensus 430 ------------~~-----~~~~p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~SD~~~F~~~-~GI 491 (701)
+. .-.+|.|.+.+.+.+++-.-|.. +....++|||-..+... .||
T Consensus 246 ~~~~~~lg~Gp~i~~~D~~~~~~~~l~~~L~~~A~~~~Ip~Q-----------------~~v~~~ggTDA~a~~~~g~gv 308 (355)
T COG1363 246 PKGDVKLGKGPVIRVKDASGIYHPKLRKFLLELAEKNNIPYQ-----------------VDVSPGGGTDAGAAHLTGGGV 308 (355)
T ss_pred cccccccCCCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCeE-----------------EEecCCCCccHHHHHHcCCCC
Confidence 11 11257788888888886544322 22222278999887662 369
Q ss_pred eEEEeeeCCCCCcCCCCcccHHHHHhhCCCchHHHHHHHHHHHHHHHHhcC
Q 005347 492 PVADMSFGTGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQLAD 542 (701)
Q Consensus 492 Ps~~~~~~~~~~~yHT~~Dt~~~i~~~~dp~~~~~~~~a~~~~~l~~~La~ 542 (701)
|+..++.. -.+-|+++...+. + + ..+..+++..++.++..
T Consensus 309 pta~Igip--~ry~Hs~~e~~~~-~-----D---~~~~~~Ll~~~i~~~~~ 348 (355)
T COG1363 309 PTALIGIP--TRYIHSPVEVAHL-D-----D---LEATVKLLVAYLESLDR 348 (355)
T ss_pred ceEEEecc--cccccCcceeecH-H-----H---HHHHHHHHHHHHHhcch
Confidence 99999763 2345887765432 1 1 23455666666665544
No 50
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2e-05 Score=85.96 Aligned_cols=202 Identities=18% Similarity=0.175 Sum_probs=121.0
Q ss_pred eeeeEEEEecC-----CCCC-CcEEEEEeccCCcCC------CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEee
Q 005347 323 TIQNVIGIIPG-----TEEP-DRLVILGNHRDAWTF------GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNW 390 (701)
Q Consensus 323 ~~~NVia~i~G-----~~~~-~~~Ivl~aH~Ds~~~------GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~ 390 (701)
..+||....+. +.++ +++||..+.+|+..+ ||....++...+|..||+|.+.... -..+|+|.|+++
T Consensus 156 ~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai-~nl~rnV~f~~f 234 (596)
T KOG2657|consen 156 HSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAI-NNLNRNVFFAFF 234 (596)
T ss_pred CCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCccc-ccccceeEEEEe
Confidence 44666666543 2233 689999999999754 8888999999999999999754322 246899999999
Q ss_pred CcccCCCcchHHHHHHHHHhhhccEEEEEE---ecC------cccC--CccccccC----hhHHHHHHHHHHHcCC-CCC
Q 005347 391 DAEEYGLIGSTEWVEENREMLASRAVAYLN---IDS------AVHE--AGFHASAT----PQLDELLKQAAKQVQD-PDN 454 (701)
Q Consensus 391 ~~EE~Gl~GS~~~~~~~~~~l~~~~va~iN---lD~------~g~g--~~~~~~~~----p~l~~~~~~~~~~v~~-p~~ 454 (701)
.||-++++||+.++-+. +..+-.++..| +|. +|.+ .++.+... -.+...+.+..+.+.. +..
T Consensus 235 ~get~~ylgS~r~~yem--e~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlrs 312 (596)
T KOG2657|consen 235 NGETLDYLGSGRAAYEM--ENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLRS 312 (596)
T ss_pred ecceeeeccchhhhhHh--hcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhcccc
Confidence 99999999999877654 23455566666 554 3333 23333222 2233333333333221 110
Q ss_pred CcchhhhccccCCCCCccccCCCCCCchHhHHh-cCCceEEEeeeCC---CCCcCCCCcccHHHHHhhCCCchHHHHHHH
Q 005347 455 SSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQ-HIGVPVADMSFGT---GYPVYHSMYDDFIWMEKFGDPTFQRHVAAA 530 (701)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~SD~~~F~~-~~GIPs~~~~~~~---~~~~yHT~~Dt~~~i~~~~dp~~~~~~~~a 530 (701)
--++--.. ...-.++ ..|-...|++ ...+.++-+.-.+ .+.+||+.+|+.+|++ +.+-.+++
T Consensus 313 ---~~f~ll~~---s~~s~~l--PPsSlqsFlR~dpn~saVvLad~~~~f~NKyYhSilDdaeNin------~sy~~al~ 378 (596)
T KOG2657|consen 313 ---HAFDLLKP---SGSSDRL--PPSSLQSFLRADPNVSAVVLADYGKEFENKYYHSILDDAENIN------DSYEKALQ 378 (596)
T ss_pred ---cCeeeecC---CCCCCCC--ChHHHHHHHhhCCCcceEEeccCCchhhhhhhhhhhcchhhcc------chhhhhhc
Confidence 00000000 0011222 4456677998 3578888886543 4579999999999985 33334445
Q ss_pred HHHHHHHHHhc
Q 005347 531 SMWGLVALQLA 541 (701)
Q Consensus 531 ~~~~~l~~~La 541 (701)
.+-..-.+-||
T Consensus 379 evea~~~~ila 389 (596)
T KOG2657|consen 379 EVEAVSTAILA 389 (596)
T ss_pred hhhhhhhcchH
Confidence 54444333333
No 51
>PRK07906 hypothetical protein; Provisional
Probab=98.07 E-value=1.5e-05 Score=89.35 Aligned_cols=83 Identities=29% Similarity=0.443 Sum_probs=69.0
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcCC----------------------CCCCCchHHHHHHHHHHHHHHhHHcCCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF----------------------GAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~----------------------GA~DnasG~A~lLElAr~l~~~~~~g~~p 381 (701)
..||+++++|..+..+.|++.+|+|+++. |+.|+-+|++++|++++.|.+ .+.+|
T Consensus 51 ~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~---~~~~~ 127 (426)
T PRK07906 51 RANVVARLPGADPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLAR---TGRRP 127 (426)
T ss_pred ceEEEEEEeCCCCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHH---cCCCC
Confidence 47999999886543578999999999741 899999999999999998865 45688
Q ss_pred CCcEEEEeeCcccCC-CcchHHHHHHHHH
Q 005347 382 RRTIVLCNWDAEEYG-LIGSTEWVEENRE 409 (701)
Q Consensus 382 ~rtI~F~~~~~EE~G-l~GS~~~~~~~~~ 409 (701)
+++|.|+++..||.| ..|+..+++++..
T Consensus 128 ~~~i~~~~~~dEE~g~~~g~~~l~~~~~~ 156 (426)
T PRK07906 128 PRDLVFAFVADEEAGGTYGAHWLVDNHPE 156 (426)
T ss_pred CccEEEEEecCcccchhhhHHHHHHHHHH
Confidence 899999999999986 5799988876543
No 52
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.05 E-value=1e-05 Score=74.66 Aligned_cols=71 Identities=24% Similarity=0.337 Sum_probs=55.9
Q ss_pred CCcccceEEEEEeCCC-chhhHHHHHHHcCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCCceecceecCCCCCCCCC
Q 005347 165 VVNVTGTVVLARYGQI-FRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFPDDKWMPPSGVQVGSVYDGTGDPTTPG 243 (701)
Q Consensus 165 gv~v~GkIvlv~~g~~-~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP~~~~~p~~~v~rg~v~~~~Gdp~tPg 243 (701)
+.+++||||||+.+.+ .+..|+..|++.||+|+|+++++.+... .
T Consensus 47 ~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~~-------------------~--------------- 92 (126)
T cd02120 47 PSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLD-------------------V--------------- 92 (126)
T ss_pred hhhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCce-------------------e---------------
Confidence 4589999999999888 7789999999999999999976532100 0
Q ss_pred CCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhCC
Q 005347 244 WPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIGG 286 (701)
Q Consensus 244 ~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~g 286 (701)
. .....||++.|++++++.|++.++.
T Consensus 93 ---------~--------~~~~~iP~v~I~~~~g~~l~~y~~~ 118 (126)
T cd02120 93 ---------V--------ADAHVLPAVHVDYEDGTAILSYINS 118 (126)
T ss_pred ---------c--------ccccccceEEECHHHHHHHHHHHHc
Confidence 0 0123699999999999999999864
No 53
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=98.04 E-value=2.4e-05 Score=82.94 Aligned_cols=132 Identities=23% Similarity=0.250 Sum_probs=87.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHHHHHHhhhccEEEEEEecCccc------
Q 005347 353 GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAVH------ 426 (701)
Q Consensus 353 GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g~------ 426 (701)
=|.||-.|+++|+|++|.+++. +...+|.|++..-||.|+.|+...+.+.. -+ ..|.+|..-.
T Consensus 131 kalDdR~g~~~lle~l~~l~~~-----~~~~~v~~v~tvqEEvG~rGA~~aa~~i~----PD--~ai~vD~~~a~d~~~~ 199 (292)
T PF05343_consen 131 KALDDRAGCAVLLELLRELKEK-----ELDVDVYFVFTVQEEVGLRGAKTAAFRIK----PD--IAIAVDVTPAGDTPGS 199 (292)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTS-----S-SSEEEEEEESSCTTTSHHHHHHHHHH-----CS--EEEEEEEEEESSSTTS
T ss_pred EeCCchhHHHHHHHHHHHHhhc-----CCCceEEEEEEeeeeecCcceeecccccC----CC--EEEEEeeeccCCCCCC
Confidence 4678999999999999988652 34599999999999999999987554432 22 3455555421
Q ss_pred ---------CCccc-----cccChhHHHHHHHHHHHcCCCCCCcchhhhccccCCCCCccccCCCCCCchHhHHh-cCCc
Q 005347 427 ---------EAGFH-----ASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQ-HIGV 491 (701)
Q Consensus 427 ---------g~~~~-----~~~~p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~SD~~~F~~-~~GI 491 (701)
|+.+. .-.+|.+.+.+.+.+++..-|.. .......+||-..|.. ..||
T Consensus 200 ~~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q-----------------~~~~~~ggTDa~~~~~~~~Gi 262 (292)
T PF05343_consen 200 DEKEQGLGKGPVIRVGDSSMIPNPKLVDKLREIAEENGIPYQ-----------------REVFSGGGTDAGAIQLSGGGI 262 (292)
T ss_dssp TTTTSCTTS-EEEEEEETTEESHHHHHHHHHHHHHHTT--EE-----------------EEEESSSSSTHHHHHTSTTSS
T ss_pred chhhccCCCCcEEEEccCCCCCCHHHHHHHHHHHHHcCCCeE-----------------EEecCCcccHHHHHHHcCCCC
Confidence 11121 22356778888888886544322 1111127899888865 2499
Q ss_pred eEEEeeeCCCCCcCCCCcccHHH
Q 005347 492 PVADMSFGTGYPVYHSMYDDFIW 514 (701)
Q Consensus 492 Ps~~~~~~~~~~~yHT~~Dt~~~ 514 (701)
|++.++. +-.+.||+.-+.+.
T Consensus 263 ~t~~i~i--P~ry~Hs~~e~~~~ 283 (292)
T PF05343_consen 263 PTAVISI--PCRYMHSPVEVIDL 283 (292)
T ss_dssp EEEEEEE--EEBSTTSTTEEEEH
T ss_pred CEEEEec--ccccCCCcceEEEH
Confidence 9999875 34468998887653
No 54
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=98.02 E-value=2.6e-05 Score=86.93 Aligned_cols=80 Identities=29% Similarity=0.324 Sum_probs=67.7
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcC-------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCc
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT-------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRT 384 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~-------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rt 384 (701)
..||+|+++|.. .+.|++.+|+|+++ .|+.|+.+|++++|++++.|.+ .+.++..+
T Consensus 87 ~~~lia~~~g~~--~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~---~~~~~~~~ 161 (410)
T PRK06133 87 GDMVVATFKGTG--KRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQ---LGFKDYGT 161 (410)
T ss_pred CCeEEEEECCCC--CceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHH---cCCCCCCC
Confidence 469999998753 46899999999985 2778999999999999998865 34567789
Q ss_pred EEEEeeCcccCCCcchHHHHHHHH
Q 005347 385 IVLCNWDAEEYGLIGSTEWVEENR 408 (701)
Q Consensus 385 I~F~~~~~EE~Gl~GS~~~~~~~~ 408 (701)
|+|++..+||.|..|+..++++..
T Consensus 162 i~~~~~~dEE~g~~G~~~~~~~~~ 185 (410)
T PRK06133 162 LTVLFNPDEETGSPGSRELIAELA 185 (410)
T ss_pred EEEEEECCcccCCccHHHHHHHHh
Confidence 999999999999899999987654
No 55
>PRK09133 hypothetical protein; Provisional
Probab=98.01 E-value=2.5e-05 Score=88.73 Aligned_cols=92 Identities=27% Similarity=0.405 Sum_probs=73.4
Q ss_pred eeeeEEEEecCCCCCCcEEEEEeccCCcC----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCC
Q 005347 323 TIQNVIGIIPGTEEPDRLVILGNHRDAWT----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (701)
Q Consensus 323 ~~~NVia~i~G~~~~~~~Ivl~aH~Ds~~----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~ 380 (701)
...||+++++|... .+.|++.+|+|+++ .|+.|+-+|+|++|++++.|.+ .+.+
T Consensus 87 ~~~nli~~~~g~~~-~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~---~~~~ 162 (472)
T PRK09133 87 RKGNLVARLRGTDP-KKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKR---EGFK 162 (472)
T ss_pred CceeEEEEecCCCC-CCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHh---cCCC
Confidence 34799999988653 46799999999863 1999999999999999888754 4567
Q ss_pred CCCcEEEEeeCccc-CCCcchHHHHHHHHHhhhccEEEEEE
Q 005347 381 PRRTIVLCNWDAEE-YGLIGSTEWVEENREMLASRAVAYLN 420 (701)
Q Consensus 381 p~rtI~F~~~~~EE-~Gl~GS~~~~~~~~~~l~~~~va~iN 420 (701)
|+++|.|++...|| .|..|+..+++++...+ +..+.|+
T Consensus 163 ~~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~~--~~~~~i~ 201 (472)
T PRK09133 163 PKRDIILALTGDEEGTPMNGVAWLAENHRDLI--DAEFALN 201 (472)
T ss_pred CCCCEEEEEECccccCccchHHHHHHHHhhcc--CeEEEEE
Confidence 89999999999999 88999999888765322 2334555
No 56
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=97.93 E-value=2.8e-05 Score=85.52 Aligned_cols=78 Identities=28% Similarity=0.391 Sum_probs=65.6
Q ss_pred eeEEEEecCCCCCCcEEEEEeccCCcCC-----------------------CCCCCchHHHHHHHHHHHHHHhHHcCCCC
Q 005347 325 QNVIGIIPGTEEPDRLVILGNHRDAWTF-----------------------GAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (701)
Q Consensus 325 ~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-----------------------GA~DnasG~A~lLElAr~l~~~~~~g~~p 381 (701)
.|+++.++|.. +.+.|++.+|+|+++. |+.|+.+|+|++|++++.|.+ .+.++
T Consensus 52 ~~~~~~~~g~~-~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~---~~~~~ 127 (375)
T TIGR01910 52 GKVVVKEPGNG-NEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIRE---AGIKP 127 (375)
T ss_pred cceEEeccCCC-CCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHH---cCCCC
Confidence 46888888854 2578999999999853 688999999999999998765 34467
Q ss_pred CCcEEEEeeCcccCCCcchHHHHHH
Q 005347 382 RRTIVLCNWDAEEYGLIGSTEWVEE 406 (701)
Q Consensus 382 ~rtI~F~~~~~EE~Gl~GS~~~~~~ 406 (701)
+++|+|+++.+||.|..|+..++++
T Consensus 128 ~~~i~~~~~~~EE~g~~G~~~~~~~ 152 (375)
T TIGR01910 128 NGNIILQSVVDEESGEAGTLYLLQR 152 (375)
T ss_pred CccEEEEEEcCcccCchhHHHHHHc
Confidence 8899999999999999999998875
No 57
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.91 E-value=3.7e-05 Score=71.42 Aligned_cols=37 Identities=30% Similarity=0.402 Sum_probs=34.8
Q ss_pred cccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCC
Q 005347 167 NVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDR 203 (701)
Q Consensus 167 ~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp 203 (701)
+++|||||++.|.|.+..|+.+|+++||+|||+|++.
T Consensus 53 ~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~ 89 (129)
T cd02124 53 DLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNG 89 (129)
T ss_pred cccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECC
Confidence 7899999999999999999999999999999999763
No 58
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=97.89 E-value=3.1e-05 Score=84.72 Aligned_cols=78 Identities=32% Similarity=0.383 Sum_probs=65.1
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcCC----------------CC----CCCchHHHHHHHHHHHHHHhHHcCCCCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF----------------GA----VDPNSGTAALLEVAQRLNKLQKRGWKPRR 383 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~----------------GA----~DnasG~A~lLElAr~l~~~~~~g~~p~r 383 (701)
..|++++++|+. +.+.|++.+|+|+++. |+ .|+.+|+|++|++++.|.+. + .|++
T Consensus 49 ~~~~~~~~~g~~-~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~---~-~~~~ 123 (361)
T TIGR01883 49 DNNLIARLPGTV-KFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTE---E-TPHG 123 (361)
T ss_pred CceEEEEEeCCC-CCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhc---C-CCCC
Confidence 579999998874 3578999999999862 55 69999999999999987652 3 4678
Q ss_pred cEEEEeeCcccCCCcchHHHHHH
Q 005347 384 TIVLCNWDAEEYGLIGSTEWVEE 406 (701)
Q Consensus 384 tI~F~~~~~EE~Gl~GS~~~~~~ 406 (701)
+|+|+++.+||.|..|+..+.+.
T Consensus 124 ~v~~~~~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 124 TIEFIFTVKEELGLIGMRLFDES 146 (361)
T ss_pred CEEEEEEcccccCchhHhHhChh
Confidence 99999999999999999987653
No 59
>PRK08596 acetylornithine deacetylase; Validated
Probab=97.81 E-value=6.9e-05 Score=83.87 Aligned_cols=81 Identities=28% Similarity=0.349 Sum_probs=67.6
Q ss_pred eeeEEEEecCCCC-CCcEEEEEeccCCcC-----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCC
Q 005347 324 IQNVIGIIPGTEE-PDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGW 379 (701)
Q Consensus 324 ~~NVia~i~G~~~-~~~~Ivl~aH~Ds~~-----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~ 379 (701)
..||+++++|... ..+.|++.+|+|+++ .|+.|+-+|++++|.+++.|.+ .++
T Consensus 62 ~~nvia~~~g~~~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~---~~~ 138 (421)
T PRK08596 62 DPNVVGVKKGTESDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHE---AGI 138 (421)
T ss_pred CceEEEEecCCCCCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHH---cCC
Confidence 3799999988643 125799999999842 2999999999999999998765 466
Q ss_pred CCCCcEEEEeeCcccCCCcchHHHHHHH
Q 005347 380 KPRRTIVLCNWDAEEYGLIGSTEWVEEN 407 (701)
Q Consensus 380 ~p~rtI~F~~~~~EE~Gl~GS~~~~~~~ 407 (701)
+++++|.|++..+||.|..|+.+++++.
T Consensus 139 ~~~~~v~~~~~~dEE~g~~G~~~~~~~~ 166 (421)
T PRK08596 139 ELPGDLIFQSVIGEEVGEAGTLQCCERG 166 (421)
T ss_pred CCCCcEEEEEEeccccCCcCHHHHHhcC
Confidence 7889999999999999999999988763
No 60
>PRK13381 peptidase T; Provisional
Probab=97.74 E-value=0.0001 Score=82.11 Aligned_cols=80 Identities=20% Similarity=0.215 Sum_probs=65.5
Q ss_pred eeeeEEEEecCCCCCCcEEEEEeccCCcCC------------------------------------------------CC
Q 005347 323 TIQNVIGIIPGTEEPDRLVILGNHRDAWTF------------------------------------------------GA 354 (701)
Q Consensus 323 ~~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~------------------------------------------------GA 354 (701)
...||||+++|+.+..+.|++.+|+|+++. |+
T Consensus 53 ~~~nvi~~~~g~~~~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~ 132 (404)
T PRK13381 53 EHAIVTAKLPGNTPGAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGT 132 (404)
T ss_pred CCeEEEEEEecCCCCCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCc
Confidence 346999999886532389999999999853 45
Q ss_pred ----CCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHHH
Q 005347 355 ----VDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEE 406 (701)
Q Consensus 355 ----~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~ 406 (701)
.|+-+|+|++|.+++.|.+. + .++.+|.|++..+||.|..|+..++.+
T Consensus 133 ~~~g~DmKgg~aa~l~a~~~l~~~---~-~~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 133 SVLGADNKAAIAVVMTLLENLTEN---E-VEHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred cccccccHHHHHHHHHHHHHHHhc---C-CCCCCEEEEEEcccccccccHHHHHHh
Confidence 79999999999999988653 2 356799999999999998999988654
No 61
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=97.72 E-value=0.00019 Score=77.21 Aligned_cols=79 Identities=30% Similarity=0.380 Sum_probs=69.9
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcC-----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~-----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~ 380 (701)
.++++.+++|+++.-.-||+.+|.|.++ -|+.|.-+-.++.||.+|.|. .+|.+
T Consensus 74 ~~~~l~T~~GS~P~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~---~~g~k 150 (420)
T KOG2275|consen 74 KYVLLYTWLGSDPELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLK---ASGFK 150 (420)
T ss_pred eeEEEEEeeCCCCCccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHH---hcCCC
Confidence 7899999999986678999999999873 199999999999999888764 47899
Q ss_pred CCCcEEEEeeCcccCC-CcchHHHHH
Q 005347 381 PRRTIVLCNWDAEEYG-LIGSTEWVE 405 (701)
Q Consensus 381 p~rtI~F~~~~~EE~G-l~GS~~~~~ 405 (701)
|+|||...|-.+||.| ..|...+++
T Consensus 151 p~Rti~lsfvpDEEi~G~~Gm~~fa~ 176 (420)
T KOG2275|consen 151 PKRTIHLSFVPDEEIGGHIGMKEFAK 176 (420)
T ss_pred cCceEEEEecCchhccCcchHHHHhh
Confidence 9999999999999976 999999887
No 62
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=97.72 E-value=0.00012 Score=83.39 Aligned_cols=88 Identities=25% Similarity=0.197 Sum_probs=65.8
Q ss_pred eeeEEEEecCCC--CCCcEEEEEeccCCcCCC--------------------------C---CCCchHHHHHHHHHHHHH
Q 005347 324 IQNVIGIIPGTE--EPDRLVILGNHRDAWTFG--------------------------A---VDPNSGTAALLEVAQRLN 372 (701)
Q Consensus 324 ~~NVia~i~G~~--~~~~~Ivl~aH~Ds~~~G--------------------------A---~DnasG~A~lLElAr~l~ 372 (701)
..||+++++|.. +..+.|++++|+|+++.| + .|+..|++++|++++.
T Consensus 46 ~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~-- 123 (477)
T TIGR01893 46 VGNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED-- 123 (477)
T ss_pred CCeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc--
Confidence 469999998753 234689999999988653 2 3999999999998764
Q ss_pred HhHHcCCCCCCcEEEEeeCcccCCCcchHHHHHHHHHhhhccEEEEEEecC
Q 005347 373 KLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDS 423 (701)
Q Consensus 373 ~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~ 423 (701)
. ..+.++|.++++..||.|+.||..+..+.. +....+|+|.
T Consensus 124 ----~-~~~~~~i~~~~~~dEE~g~~Gs~~l~~~~~-----~~~~~~~~d~ 164 (477)
T TIGR01893 124 ----N-NLKHPPLELLFTVDEETGMDGALGLDENWL-----SGKILINIDS 164 (477)
T ss_pred ----C-CCCCCCEEEEEEeccccCchhhhhcChhhc-----CCcEEEEecC
Confidence 1 235679999999999999999999865431 2234566664
No 63
>PRK07907 hypothetical protein; Provisional
Probab=97.71 E-value=0.0002 Score=80.95 Aligned_cols=80 Identities=25% Similarity=0.257 Sum_probs=66.7
Q ss_pred eeeeEEEEecCCCCCCcEEEEEeccCCcC-----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCC
Q 005347 323 TIQNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGW 379 (701)
Q Consensus 323 ~~~NVia~i~G~~~~~~~Ivl~aH~Ds~~-----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~ 379 (701)
...||+++++|.. +.+.|++.+|+|.++ .|+.|+-+|++++|.+++.| +.
T Consensus 69 ~~~nl~a~~~~~~-~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l------~~ 141 (449)
T PRK07907 69 GAPAVIGTRPAPP-GAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL------GG 141 (449)
T ss_pred CCCEEEEEecCCC-CCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh------cc
Confidence 3479999998753 357899999999863 19999999999999999987 23
Q ss_pred CCCCcEEEEeeCcccCCCcchHHHHHHHHH
Q 005347 380 KPRRTIVLCNWDAEEYGLIGSTEWVEENRE 409 (701)
Q Consensus 380 ~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~ 409 (701)
+++++|.|++.+.||.|..|+.++++++..
T Consensus 142 ~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~ 171 (449)
T PRK07907 142 DLPVGVTVFVEGEEEMGSPSLERLLAEHPD 171 (449)
T ss_pred CCCCcEEEEEEcCcccCCccHHHHHHhchH
Confidence 567899999999999998999999987543
No 64
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=97.70 E-value=0.00013 Score=80.78 Aligned_cols=80 Identities=24% Similarity=0.323 Sum_probs=66.2
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcCC-----------------------CCCCCchHHHHHHHHHHHHHHhHHcCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-----------------------GAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-----------------------GA~DnasG~A~lLElAr~l~~~~~~g~~ 380 (701)
..|++++++|.. +.+.|++.+|+|+++. |+.|+-.|++++|++++.|.+ .+.+
T Consensus 63 ~~nl~~~~~g~~-~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~---~~~~ 138 (400)
T PRK13983 63 RPNIVAKIPGGD-GKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMD---LGIR 138 (400)
T ss_pred CccEEEEecCCC-CCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHH---hCCC
Confidence 589999998864 3458999999999852 689999999999998887764 4557
Q ss_pred CCCcEEEEeeCcccCCC-cchHHHHHHH
Q 005347 381 PRRTIVLCNWDAEEYGL-IGSTEWVEEN 407 (701)
Q Consensus 381 p~rtI~F~~~~~EE~Gl-~GS~~~~~~~ 407 (701)
++++|.|++..+||.|. .|+..+++++
T Consensus 139 ~~~~v~~~~~~dEE~g~~~g~~~~~~~~ 166 (400)
T PRK13983 139 PKYNLGLAFVSDEETGSKYGIQYLLKKH 166 (400)
T ss_pred CCCcEEEEEEeccccCCcccHHHHHhhc
Confidence 88999999999999887 4888877664
No 65
>PRK06837 acetylornithine deacetylase; Provisional
Probab=97.70 E-value=0.00013 Score=81.82 Aligned_cols=80 Identities=26% Similarity=0.274 Sum_probs=65.4
Q ss_pred eeeeEEEEecCCCCCCcEEEEEeccCCcCC-----------------------CCCCCchHHHHHHHHHHHHHHhHHcCC
Q 005347 323 TIQNVIGIIPGTEEPDRLVILGNHRDAWTF-----------------------GAVDPNSGTAALLEVAQRLNKLQKRGW 379 (701)
Q Consensus 323 ~~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-----------------------GA~DnasG~A~lLElAr~l~~~~~~g~ 379 (701)
...||+++++|..+..+.|++.+|+|+++. |+.|+-+|++++|.+++.|.+ .|.
T Consensus 82 ~~~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~---~~~ 158 (427)
T PRK06837 82 GAPNVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRA---AGL 158 (427)
T ss_pred CCceEEEEecCCCCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHH---cCC
Confidence 468999999886433578999999998752 888999999999999887654 566
Q ss_pred CCCCcEEEEeeCcccCCCcchHHHHH
Q 005347 380 KPRRTIVLCNWDAEEYGLIGSTEWVE 405 (701)
Q Consensus 380 ~p~rtI~F~~~~~EE~Gl~GS~~~~~ 405 (701)
+|+++|.|++...||.|..|+...+.
T Consensus 159 ~~~~~i~~~~~~dEE~~g~g~~~~~~ 184 (427)
T PRK06837 159 APAARVHFQSVIEEESTGNGALSTLQ 184 (427)
T ss_pred CCCCcEEEEEEeccccCCHhHHHHHh
Confidence 78899999999999987778766554
No 66
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=97.69 E-value=0.00023 Score=77.79 Aligned_cols=78 Identities=22% Similarity=0.247 Sum_probs=65.3
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcC----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p 381 (701)
..||++++.|.. .+.|++.+|+|+++ .|+.|+-+|++++|.+++.|.+. +.
T Consensus 46 ~~nl~~~~~~~~--~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~-----~~ 118 (364)
T TIGR01892 46 KSNLVAVIGPSG--AGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE-----QL 118 (364)
T ss_pred cccEEEEecCCC--CCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc-----Cc
Confidence 579999996643 46799999999962 18999999999999999998753 34
Q ss_pred CCcEEEEeeCcccCCCcchHHHHHHHH
Q 005347 382 RRTIVLCNWDAEEYGLIGSTEWVEENR 408 (701)
Q Consensus 382 ~rtI~F~~~~~EE~Gl~GS~~~~~~~~ 408 (701)
+++|.|++..+||.|..|+..++++..
T Consensus 119 ~~~v~~~~~~~EE~g~~G~~~~~~~~~ 145 (364)
T TIGR01892 119 KKPLHLALTADEEVGCTGAPKMIEAGA 145 (364)
T ss_pred CCCEEEEEEeccccCCcCHHHHHHhcC
Confidence 678999999999999999999887753
No 67
>PRK09104 hypothetical protein; Validated
Probab=97.68 E-value=0.00021 Score=81.03 Aligned_cols=94 Identities=20% Similarity=0.168 Sum_probs=72.1
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcC--------------------------C--CCCCCchHHHHHHHHHHHHHHhH
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT--------------------------F--GAVDPNSGTAALLEVAQRLNKLQ 375 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~--------------------------~--GA~DnasG~A~lLElAr~l~~~~ 375 (701)
..||+++++|.....+.|++.+|+|.++ + |+.|+-.|++++|++++.|.+.
T Consensus 68 ~~~l~a~~~g~~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~- 146 (464)
T PRK09104 68 HPMVVAHHEGPTGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAV- 146 (464)
T ss_pred CCEEEEEecCCCCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHh-
Confidence 3699999987543367899999999831 1 7899999999999999998764
Q ss_pred HcCCCCCCcEEEEeeCcccCCCcchHHHHHHHHHhhhccEEEEEEec
Q 005347 376 KRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNID 422 (701)
Q Consensus 376 ~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD 422 (701)
+-++..+|.|++.+.||.|-.|..+|+.+....+ +..+.|..|
T Consensus 147 --~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~--~~d~~iv~E 189 (464)
T PRK09104 147 --TGSLPVRVTILFEGEEESGSPSLVPFLEANAEEL--KADVALVCD 189 (464)
T ss_pred --cCCCCCcEEEEEECccccCCccHHHHHHhhHHhc--CCCEEEEeC
Confidence 2245678999999999999999999998754332 223445444
No 68
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=97.67 E-value=0.00018 Score=80.26 Aligned_cols=77 Identities=25% Similarity=0.268 Sum_probs=61.3
Q ss_pred eeeEEEEecCCCCC-CcEEEEEeccCCcCC--------------------------------------------------
Q 005347 324 IQNVIGIIPGTEEP-DRLVILGNHRDAWTF-------------------------------------------------- 352 (701)
Q Consensus 324 ~~NVia~i~G~~~~-~~~Ivl~aH~Ds~~~-------------------------------------------------- 352 (701)
..||+|+++|.... .+.|++.||+|++..
T Consensus 57 ~gnv~~~~~~~~~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~ 136 (410)
T TIGR01882 57 NGYVIATIPSNTDKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGT 136 (410)
T ss_pred ceEEEEEecCCCCCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCC
Confidence 68999999986531 278999999999751
Q ss_pred ---CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHH
Q 005347 353 ---GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVE 405 (701)
Q Consensus 353 ---GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~ 405 (701)
| .|+-+|+|++|++++.|.+.. + .++.+|+|++..+||.| .|+..+..
T Consensus 137 ~l~G-~D~KgglAa~l~A~~~L~e~~--~-~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 137 TLLG-ADDKAGIAEIMTAADYLINHP--E-IKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred Eeec-ccCHHHHHHHHHHHHHHHhCC--C-CCCCCEEEEEECcccCC-cCcchhhh
Confidence 3 577889999999999987631 2 35678999999999998 58877653
No 69
>PRK07473 carboxypeptidase; Provisional
Probab=97.62 E-value=0.00023 Score=78.43 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=66.4
Q ss_pred eeEEEEecCCCCCCcEEEEEeccCCcC-------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcE
Q 005347 325 QNVIGIIPGTEEPDRLVILGNHRDAWT-------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTI 385 (701)
Q Consensus 325 ~NVia~i~G~~~~~~~Ivl~aH~Ds~~-------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI 385 (701)
.||+++++|.....+.|++.+|+|+++ .|+.|+-+|++++|.+++.|.+. +.+++.+|
T Consensus 62 ~~~~~~~~~~~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~---~~~~~~~v 138 (376)
T PRK07473 62 DCVRARFPHPRQGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARA---GITTPLPI 138 (376)
T ss_pred CeEEEEeCCCCCCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHc---CCCCCCCE
Confidence 589999976433357899999999762 19999999999999999988653 34556689
Q ss_pred EEEeeCcccCCCcchHHHHHHHH
Q 005347 386 VLCNWDAEEYGLIGSTEWVEENR 408 (701)
Q Consensus 386 ~F~~~~~EE~Gl~GS~~~~~~~~ 408 (701)
.|++...||.|..|+..++++..
T Consensus 139 ~~~~~~dEE~g~~g~~~~~~~~~ 161 (376)
T PRK07473 139 TVLFTPDEEVGTPSTRDLIEAEA 161 (376)
T ss_pred EEEEeCCcccCCccHHHHHHHhh
Confidence 99999999999999999998653
No 70
>PRK08262 hypothetical protein; Provisional
Probab=97.61 E-value=0.0003 Score=80.24 Aligned_cols=80 Identities=30% Similarity=0.431 Sum_probs=66.8
Q ss_pred eeEEEEecCCCCCCcEEEEEeccCCcCC-------------------------CCCCCchHHHHHHHHHHHHHHhHHcCC
Q 005347 325 QNVIGIIPGTEEPDRLVILGNHRDAWTF-------------------------GAVDPNSGTAALLEVAQRLNKLQKRGW 379 (701)
Q Consensus 325 ~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-------------------------GA~DnasG~A~lLElAr~l~~~~~~g~ 379 (701)
.|+++.++|..+..+.|++.+|+|.++. |+.|+-+|++++|.+++.|.+ .+.
T Consensus 98 ~~vv~~~~g~~~~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~---~~~ 174 (486)
T PRK08262 98 HSLLYTWKGSDPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLA---QGF 174 (486)
T ss_pred ccEEEEEECCCCCCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHH---cCC
Confidence 6899999887532378999999998631 899999999999999998865 355
Q ss_pred CCCCcEEEEeeCcccCCCcchHHHHHHH
Q 005347 380 KPRRTIVLCNWDAEEYGLIGSTEWVEEN 407 (701)
Q Consensus 380 ~p~rtI~F~~~~~EE~Gl~GS~~~~~~~ 407 (701)
+++++|+|++..+||.|..|+.++++..
T Consensus 175 ~l~~~I~llf~~dEE~g~~G~~~l~~~l 202 (486)
T PRK08262 175 QPRRTIYLAFGHDEEVGGLGARAIAELL 202 (486)
T ss_pred CCCCeEEEEEecccccCCcCHHHHHHHH
Confidence 6788999999999999888999888654
No 71
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.58 E-value=0.00023 Score=78.41 Aligned_cols=77 Identities=31% Similarity=0.385 Sum_probs=64.6
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcCC-----------------------CCCCCchHHHHHHHHHHHHHHhHHcCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-----------------------GAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-----------------------GA~DnasG~A~lLElAr~l~~~~~~g~~ 380 (701)
..|+++++ |.. .+.|++.+|+|+++. |+.|+-+|++++|..++.|.+ .+.+
T Consensus 48 ~~~l~a~~-g~~--~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~---~~~~ 121 (377)
T PRK08588 48 RANLVAEI-GSG--SPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKE---QGQL 121 (377)
T ss_pred CceEEEEe-CCC--CceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHH---cCCC
Confidence 36999998 443 368999999999752 677999999999999998765 3557
Q ss_pred CCCcEEEEeeCcccCCCcchHHHHHH
Q 005347 381 PRRTIVLCNWDAEEYGLIGSTEWVEE 406 (701)
Q Consensus 381 p~rtI~F~~~~~EE~Gl~GS~~~~~~ 406 (701)
++++|.|++..+||.|..|+..++++
T Consensus 122 ~~~~i~l~~~~dEE~g~~G~~~~~~~ 147 (377)
T PRK08588 122 LNGTIRLLATAGEEVGELGAKQLTEK 147 (377)
T ss_pred CCCcEEEEEEcccccCchhHHHHHhc
Confidence 78999999999999999999999876
No 72
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.52 E-value=0.00031 Score=78.63 Aligned_cols=79 Identities=23% Similarity=0.209 Sum_probs=64.2
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcC---------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT---------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPR 382 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~---------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~ 382 (701)
..|++|+++|.. +++.|++.+|+|.++ .|+.|+-+|++++|.+++.|.+ .+++++
T Consensus 71 ~~nlia~~~g~~-~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~---~~~~~~ 146 (427)
T PRK13013 71 RWNLVARRQGAR-DGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLA---VYPDFA 146 (427)
T ss_pred cceEEEEecCCC-CCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHH---hCCCCC
Confidence 469999998764 357899999999863 1899999999999999998865 356778
Q ss_pred CcEEEEeeCcccCCCcchHHHHHH
Q 005347 383 RTIVLCNWDAEEYGLIGSTEWVEE 406 (701)
Q Consensus 383 rtI~F~~~~~EE~Gl~GS~~~~~~ 406 (701)
++|+|++..+||.|-.|...|+.+
T Consensus 147 ~~v~~~~~~dEE~g~~~g~~~l~~ 170 (427)
T PRK13013 147 GSIEISGTADEESGGFGGVAYLAE 170 (427)
T ss_pred ccEEEEEEeccccCChhHHHHHHh
Confidence 899999999999886655555544
No 73
>PRK05469 peptidase T; Provisional
Probab=97.52 E-value=0.00046 Score=76.94 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=63.8
Q ss_pred eeeEEEEecCCC-CCCcEEEEEeccCCcCC------------------------------------------------CC
Q 005347 324 IQNVIGIIPGTE-EPDRLVILGNHRDAWTF------------------------------------------------GA 354 (701)
Q Consensus 324 ~~NVia~i~G~~-~~~~~Ivl~aH~Ds~~~------------------------------------------------GA 354 (701)
..||+|+++|+. ++.+.|++.+|+|+++. |+
T Consensus 55 ~~~v~~~~~g~~~~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~ 134 (408)
T PRK05469 55 NGYVMATLPANVDKDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGT 134 (408)
T ss_pred CeEEEEEecCCCCCCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCC
Confidence 468999998863 33589999999999831 44
Q ss_pred ----CCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHH
Q 005347 355 ----VDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVE 405 (701)
Q Consensus 355 ----~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~ 405 (701)
.|+-+|+|++|.+++.|.+. +..++.+|+|++..+||.| .|+..++.
T Consensus 135 ~~lg~D~Kgglaa~l~a~~~l~~~---~~~~~g~v~~~f~~dEE~g-~Ga~~~~~ 185 (408)
T PRK05469 135 TLLGADDKAGIAEIMTALEYLIAH---PEIKHGDIRVAFTPDEEIG-RGADKFDV 185 (408)
T ss_pred EeecccchHHHHHHHHHHHHHHhC---CCCCCCCEEEEEecccccC-CCHHHhhh
Confidence 89999999999999988653 3356789999999999998 79988763
No 74
>PRK07338 hypothetical protein; Provisional
Probab=97.50 E-value=0.00031 Score=78.09 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=65.8
Q ss_pred eeEEEEecCCCCCCcEEEEEeccCCcCC-------------------CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcE
Q 005347 325 QNVIGIIPGTEEPDRLVILGNHRDAWTF-------------------GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTI 385 (701)
Q Consensus 325 ~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-------------------GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI 385 (701)
.||+|+++|.. .+.|++.+|+|.++. |+.|+-+|++++|.+++.|.+ .+.+++++|
T Consensus 81 ~nl~a~~~~~~--~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~---~~~~~~~~i 155 (402)
T PRK07338 81 PALHVSVRPEA--PRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFER---SPLADKLGY 155 (402)
T ss_pred CeEEEEECCCC--CccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHh---cCCCCCCCE
Confidence 69999997643 235999999998731 789999999999999998864 355677899
Q ss_pred EEEeeCcccCCCcchHHHHHHHH
Q 005347 386 VLCNWDAEEYGLIGSTEWVEENR 408 (701)
Q Consensus 386 ~F~~~~~EE~Gl~GS~~~~~~~~ 408 (701)
.|++..+||.|..|+..++++..
T Consensus 156 ~~~~~~dEE~g~~g~~~~~~~~~ 178 (402)
T PRK07338 156 DVLINPDEEIGSPASAPLLAELA 178 (402)
T ss_pred EEEEECCcccCChhhHHHHHHHh
Confidence 99999999999999999988764
No 75
>PRK06915 acetylornithine deacetylase; Validated
Probab=97.48 E-value=0.00038 Score=77.89 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=65.9
Q ss_pred eeeeEEEEecCCCCCCcEEEEEeccCCcC-----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCC
Q 005347 323 TIQNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGW 379 (701)
Q Consensus 323 ~~~NVia~i~G~~~~~~~Ivl~aH~Ds~~-----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~ 379 (701)
...||+|+++|... .+.|++.+|+|+++ .|+.|+-+|++++|.+++.|.+ .++
T Consensus 79 ~~~nlia~~~g~~~-~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~---~~~ 154 (422)
T PRK06915 79 DSPNIVATLKGSGG-GKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIE---SGI 154 (422)
T ss_pred CCceEEEEEcCCCC-CCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHH---cCC
Confidence 35899999988653 57899999999874 1888999999999998888764 456
Q ss_pred CCCCcEEEEeeCcccCCCcchHHHHHH
Q 005347 380 KPRRTIVLCNWDAEEYGLIGSTEWVEE 406 (701)
Q Consensus 380 ~p~rtI~F~~~~~EE~Gl~GS~~~~~~ 406 (701)
+++.+|.|++..+||.|..|+...+.+
T Consensus 155 ~~~~~v~~~~~~dEE~g~~G~~~~~~~ 181 (422)
T PRK06915 155 ELKGDVIFQSVIEEESGGAGTLAAILR 181 (422)
T ss_pred CCCCcEEEEEecccccCCcchHHHHhc
Confidence 777899999999999888898876654
No 76
>PRK07079 hypothetical protein; Provisional
Probab=97.47 E-value=0.0007 Score=76.92 Aligned_cols=83 Identities=20% Similarity=0.130 Sum_probs=68.2
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcC----------C--------------CCCCCchHHHHHHHHHHHHHHhHHcCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT----------F--------------GAVDPNSGTAALLEVAQRLNKLQKRGW 379 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~----------~--------------GA~DnasG~A~lLElAr~l~~~~~~g~ 379 (701)
..||++++.|.. +.+.|++.+|+|.++ . |+.|+-+|++++|..++.|.+. .|.
T Consensus 72 ~~~vva~~~~~~-~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~--~~~ 148 (469)
T PRK07079 72 GPFLIAERIEDD-ALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAA--RGG 148 (469)
T ss_pred CCEEEEEeCCCC-CCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHh--cCC
Confidence 479999986543 357899999999652 1 9999999999999999887532 345
Q ss_pred CCCCcEEEEeeCcccCCCcchHHHHHHHHH
Q 005347 380 KPRRTIVLCNWDAEEYGLIGSTEWVEENRE 409 (701)
Q Consensus 380 ~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~ 409 (701)
+++++|.|++...||.|..|+.++++++..
T Consensus 149 ~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~ 178 (469)
T PRK07079 149 RLGFNVKLLIEMGEEIGSPGLAEVCRQHRE 178 (469)
T ss_pred CCCCCEEEEEECccccCCccHHHHHHHhHH
Confidence 788999999999999999999999988753
No 77
>PRK06446 hypothetical protein; Provisional
Probab=97.47 E-value=0.0006 Score=76.74 Aligned_cols=81 Identities=22% Similarity=0.191 Sum_probs=66.1
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcC-----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~-----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~ 380 (701)
-.||++++++. +.+.|++.+|+|.++ -|+.|+-+|++++|...+.+.+. + +
T Consensus 50 ~~~lia~~~~~--~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~---~-~ 123 (436)
T PRK06446 50 HPVVYGEINVG--AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDK---H-K 123 (436)
T ss_pred CCEEEEEecCC--CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHc---C-C
Confidence 47999999643 246899999999952 19999999999999988876532 2 5
Q ss_pred CCCcEEEEeeCcccCCCcchHHHHHHHHHh
Q 005347 381 PRRTIVLCNWDAEEYGLIGSTEWVEENREM 410 (701)
Q Consensus 381 p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~ 410 (701)
+..+|.|++...||.|..|+.+|++++...
T Consensus 124 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~ 153 (436)
T PRK06446 124 LNVNVKFLYEGEEEIGSPNLEDFIEKNKNK 153 (436)
T ss_pred CCCCEEEEEEcccccCCHhHHHHHHHHHHH
Confidence 678999999999999999999999886543
No 78
>PRK07522 acetylornithine deacetylase; Provisional
Probab=97.42 E-value=0.0005 Score=75.81 Aligned_cols=78 Identities=23% Similarity=0.234 Sum_probs=65.0
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcC----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p 381 (701)
..||++++.|.. .+.|++.+|+|+++ .|+.|+-+|+|++|.+++.|.+. ++
T Consensus 52 ~~nv~a~~~~~~--~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~-----~~ 124 (385)
T PRK07522 52 KANLFATIGPAD--RGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA-----PL 124 (385)
T ss_pred cccEEEEeCCCC--CCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC-----CC
Confidence 479999996542 46899999999752 18999999999999999988763 45
Q ss_pred CCcEEEEeeCcccCCCcchHHHHHHHH
Q 005347 382 RRTIVLCNWDAEEYGLIGSTEWVEENR 408 (701)
Q Consensus 382 ~rtI~F~~~~~EE~Gl~GS~~~~~~~~ 408 (701)
+++|.|++..+||.|..|+..++++..
T Consensus 125 ~~~i~~~~~~dEE~g~~G~~~l~~~~~ 151 (385)
T PRK07522 125 RRPLHLAFSYDEEVGCLGVPSMIARLP 151 (385)
T ss_pred CCCEEEEEEeccccCCccHHHHHHHhh
Confidence 679999999999998899999987643
No 79
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.40 E-value=0.00062 Score=74.79 Aligned_cols=78 Identities=23% Similarity=0.212 Sum_probs=63.1
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcCC-----------------------CCCCCchHHHHHHHHHHHHHHhHHcCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-----------------------GAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-----------------------GA~DnasG~A~lLElAr~l~~~~~~g~~ 380 (701)
..|+++++ |.. .+.|++.+|+|+++. |+.|+-+|++++|..++.|.+ .+.+
T Consensus 47 ~~n~~~~~-g~~--~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~---~~~~ 120 (375)
T PRK13009 47 VKNLWARR-GTE--GPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVA---AHPD 120 (375)
T ss_pred CcEEEEEe-cCC--CCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHH---hcCC
Confidence 47999987 642 578999999999742 777999999999999987754 3457
Q ss_pred CCCcEEEEeeCcccCC-CcchHHHHHHH
Q 005347 381 PRRTIVLCNWDAEEYG-LIGSTEWVEEN 407 (701)
Q Consensus 381 p~rtI~F~~~~~EE~G-l~GS~~~~~~~ 407 (701)
++++|+|++..+||.| ..|+..+++..
T Consensus 121 ~~~~i~~~~~~~EE~~~~~G~~~~~~~~ 148 (375)
T PRK13009 121 HKGSIAFLITSDEEGPAINGTVKVLEWL 148 (375)
T ss_pred CCceEEEEEEeecccccccCHHHHHHHH
Confidence 7899999999999975 46998887653
No 80
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=97.40 E-value=0.00055 Score=76.02 Aligned_cols=80 Identities=26% Similarity=0.308 Sum_probs=65.5
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcC-----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~-----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~ 380 (701)
..|++++++|.....+.|++.+|+|.++ .|+.|+-+|++++|.+++.|.+ .+.+
T Consensus 57 ~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~---~~~~ 133 (400)
T TIGR01880 57 KPVVVLTWPGSNPELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKA---SGFK 133 (400)
T ss_pred ceeEEEEEecCCCCCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHH---cCCC
Confidence 4699999988643236899999999873 1888999999999999998865 3456
Q ss_pred CCCcEEEEeeCcccCCC-cchHHHHHH
Q 005347 381 PRRTIVLCNWDAEEYGL-IGSTEWVEE 406 (701)
Q Consensus 381 p~rtI~F~~~~~EE~Gl-~GS~~~~~~ 406 (701)
++++|+|++..+||.|- .|+.+++++
T Consensus 134 ~~~~v~l~~~~dEE~g~~~G~~~~~~~ 160 (400)
T TIGR01880 134 FKRTIHISFVPDEEIGGHDGMEKFAKT 160 (400)
T ss_pred CCceEEEEEeCCcccCcHhHHHHHHHh
Confidence 78999999999999874 699888765
No 81
>PRK08201 hypothetical protein; Provisional
Probab=97.40 E-value=0.00085 Score=75.94 Aligned_cols=82 Identities=21% Similarity=0.164 Sum_probs=67.0
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcC-----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~-----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~ 380 (701)
..||++++.|.. +.+.|++.+|+|.++ -|+.|+-+|+|++|++++.|.+. +.+
T Consensus 66 ~~~l~a~~~~~~-~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~---~~~ 141 (456)
T PRK08201 66 HPIVYADWLHAP-GKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKV---EGT 141 (456)
T ss_pred CCEEEEEecCCC-CCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHh---cCC
Confidence 368999987643 356899999999942 19999999999999999988653 225
Q ss_pred CCCcEEEEeeCcccCCCcchHHHHHHHHH
Q 005347 381 PRRTIVLCNWDAEEYGLIGSTEWVEENRE 409 (701)
Q Consensus 381 p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~ 409 (701)
++++|.|++...||.|-.|+..|++++..
T Consensus 142 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~~ 170 (456)
T PRK08201 142 LPVNVKFCIEGEEEIGSPNLDSFVEEEKD 170 (456)
T ss_pred CCCCEEEEEEcccccCCccHHHHHHhhHH
Confidence 67799999999999999999999987644
No 82
>PRK09864 putative peptidase; Provisional
Probab=97.37 E-value=0.0019 Score=70.21 Aligned_cols=129 Identities=23% Similarity=0.258 Sum_probs=86.2
Q ss_pred CCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHHHHHHhhhccEEEEEEecCcc--------
Q 005347 354 AVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSAV-------- 425 (701)
Q Consensus 354 A~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~g-------- 425 (701)
|-||-.|+++|+|++|.+.+ +..+|.|++..-||.|+.|+..-+.... .++ .|-+|+..
T Consensus 173 alDnR~g~~~lle~l~~l~~-------~~~~vy~v~TvQEEvGlrGA~~aa~~i~----PDi--aIavDvt~~~d~p~~~ 239 (356)
T PRK09864 173 ALDNRIGCAMMAELLQTVNN-------PEITLYGVGSVEEEVGLRGAQTSAEHIK----PDV--VIVLDTAVAGDVPGID 239 (356)
T ss_pred eCccHHHHHHHHHHHHHhhc-------CCCeEEEEEEcchhcchHHHHHHHhcCC----CCE--EEEEecccCCCCCCCc
Confidence 45899999999999998742 6799999999999999999986444332 233 45566542
Q ss_pred ---------cCCcc-----ccccChhHHHHHHHHHHHcCCCCCCcchhhhccccCCCCCccccCCCCCCchHhHHh-cCC
Q 005347 426 ---------HEAGF-----HASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQ-HIG 490 (701)
Q Consensus 426 ---------~g~~~-----~~~~~p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~SD~~~F~~-~~G 490 (701)
.|+.+ ..-.+|.+.+.+.+.+++..-|.. ......+|+|-..+.. ..|
T Consensus 240 ~~~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q-----------------~~~~~~ggTDa~~i~~~~~G 302 (356)
T PRK09864 240 NIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQ-----------------FSTMKTGATDGGRYNVMGGG 302 (356)
T ss_pred ccccccccCCCCeEEEccCCccCCHHHHHHHHHHHHHcCCCce-----------------EEEcCCCCchHHHHHHhCCC
Confidence 22322 233467788888888887554432 1111114777766543 369
Q ss_pred ceEEEeeeCCCCCcCCCCcccHHH
Q 005347 491 VPVADMSFGTGYPVYHSMYDDFIW 514 (701)
Q Consensus 491 IPs~~~~~~~~~~~yHT~~Dt~~~ 514 (701)
||++.++- +-.+-||+.-..+.
T Consensus 303 vpt~~isi--P~RY~Hs~~e~~~~ 324 (356)
T PRK09864 303 RPVVALCL--PTRYLHANSGMISK 324 (356)
T ss_pred CcEEEEee--ccCcCCCcceEeEH
Confidence 99999875 23356999887654
No 83
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=97.30 E-value=0.0008 Score=73.31 Aligned_cols=75 Identities=27% Similarity=0.234 Sum_probs=62.5
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcC--------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEe
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT--------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCN 389 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~--------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~ 389 (701)
..|++|++.| . .+.|++.+|+|.++ .|+.|+-+|+|++|++++.| . .+++++|.|++
T Consensus 48 ~~n~i~~~~~-~--~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~-----~~~~~~i~~~~ 118 (348)
T PRK04443 48 AGNARGPAGD-G--PPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E-----ALVRARVSFVG 118 (348)
T ss_pred CCcEEEEcCC-C--CCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c-----ccCCCCEEEEE
Confidence 3689999843 2 46899999999984 19999999999999999987 2 26788999999
Q ss_pred eCcccCCCcchHHHHHHH
Q 005347 390 WDAEEYGLIGSTEWVEEN 407 (701)
Q Consensus 390 ~~~EE~Gl~GS~~~~~~~ 407 (701)
..+||.|..|...++.+.
T Consensus 119 ~~dEE~g~~~~~~~l~~~ 136 (348)
T PRK04443 119 AVEEEAPSSGGARLVADR 136 (348)
T ss_pred EcccccCChhHHHHHHhc
Confidence 999999988888877653
No 84
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=97.22 E-value=0.0011 Score=75.27 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=63.2
Q ss_pred eEEEEecCCCCCCcEEEEEeccCCcC---------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCc
Q 005347 326 NVIGIIPGTEEPDRLVILGNHRDAWT---------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRT 384 (701)
Q Consensus 326 NVia~i~G~~~~~~~Ivl~aH~Ds~~---------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rt 384 (701)
|+++.+.+.. +++.|++.+|+|.++ -|+.|+-+|++++|..+++|.+ .|.+++++
T Consensus 67 ~~~~~~~~~~-~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~---~~~~~~~~ 142 (466)
T TIGR01886 67 NYAGHVEYGA-GDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKE---LGLPPSKK 142 (466)
T ss_pred CCceeEEecC-CCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHH---hCCCCCCC
Confidence 4555543322 357899999999962 1999999999999998887754 46678899
Q ss_pred EEEEeeCcccCCCcchHHHHHHHH
Q 005347 385 IVLCNWDAEEYGLIGSTEWVEENR 408 (701)
Q Consensus 385 I~F~~~~~EE~Gl~GS~~~~~~~~ 408 (701)
|+|++...||.|..|+.+|++++.
T Consensus 143 i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 143 IRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred EEEEEECccccCcccHHHHHhcCc
Confidence 999999999999999999998653
No 85
>PRK07318 dipeptidase PepV; Reviewed
Probab=97.21 E-value=0.0011 Score=75.17 Aligned_cols=78 Identities=19% Similarity=0.150 Sum_probs=64.2
Q ss_pred eEEEEecCCCCCCcEEEEEeccCCcC---------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCc
Q 005347 326 NVIGIIPGTEEPDRLVILGNHRDAWT---------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRT 384 (701)
Q Consensus 326 NVia~i~G~~~~~~~Ivl~aH~Ds~~---------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rt 384 (701)
|+++++++.. +.+.|++.+|+|.++ .|+.|+-+|++++|.+++.|.+ .|++++++
T Consensus 68 n~~~~~~~~~-~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~---~g~~~~~~ 143 (466)
T PRK07318 68 NYAGHIEYGE-GEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKE---LGLPLSKK 143 (466)
T ss_pred CccceEEECC-CCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHH---cCCCCCcc
Confidence 7777775322 245799999999873 1999999999999999888764 46778889
Q ss_pred EEEEeeCcccCCCcchHHHHHHH
Q 005347 385 IVLCNWDAEEYGLIGSTEWVEEN 407 (701)
Q Consensus 385 I~F~~~~~EE~Gl~GS~~~~~~~ 407 (701)
|.|++...||.|..|+.++++++
T Consensus 144 i~l~~~~DEE~g~~G~~~l~~~~ 166 (466)
T PRK07318 144 VRFIVGTDEESGWKCMDYYFEHE 166 (466)
T ss_pred EEEEEEcccccCchhHHHHHHhC
Confidence 99999999999999999998864
No 86
>PRK05111 acetylornithine deacetylase; Provisional
Probab=97.19 E-value=0.0011 Score=73.11 Aligned_cols=76 Identities=20% Similarity=0.324 Sum_probs=62.2
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcC----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p 381 (701)
-.||+|++ |.. .+.|++.+|+|+++ .|+.|+-+|++++|++++.|.+. .+
T Consensus 60 ~~nvia~~-g~~--~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~-----~~ 131 (383)
T PRK05111 60 KFNLLASL-GSG--EGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT-----KL 131 (383)
T ss_pred CceEEEEe-CCC--CCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc-----CC
Confidence 36999999 543 23699999999973 18999999999999999988642 34
Q ss_pred CCcEEEEeeCcccCCCcchHHHHHHH
Q 005347 382 RRTIVLCNWDAEEYGLIGSTEWVEEN 407 (701)
Q Consensus 382 ~rtI~F~~~~~EE~Gl~GS~~~~~~~ 407 (701)
+.+|+|++..+||.|..|+..++++.
T Consensus 132 ~~~i~~~~~~~EE~g~~G~~~~~~~~ 157 (383)
T PRK05111 132 KKPLYILATADEETSMAGARAFAEAT 157 (383)
T ss_pred CCCeEEEEEeccccCcccHHHHHhcC
Confidence 57899999999999988999988753
No 87
>PRK08652 acetylornithine deacetylase; Provisional
Probab=97.18 E-value=0.00096 Score=72.40 Aligned_cols=73 Identities=25% Similarity=0.270 Sum_probs=59.9
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcC--------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEe
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT--------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCN 389 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~--------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~ 389 (701)
..|+++ |. .+.|++.+|+|+++ .|+.|+-+|+|++|.+++.|.+. .++.+|.|++
T Consensus 47 ~~~~~~---~~---~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~-----~~~~~v~~~~ 115 (347)
T PRK08652 47 VINIVV---NS---KAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE-----FEDLNVGIAF 115 (347)
T ss_pred eeEEEc---CC---CCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc-----ccCCCEEEEE
Confidence 456766 32 46799999999975 29999999999999999988642 3456999999
Q ss_pred eCcccCCCcchHHHHHHH
Q 005347 390 WDAEEYGLIGSTEWVEEN 407 (701)
Q Consensus 390 ~~~EE~Gl~GS~~~~~~~ 407 (701)
..+||.|..|+..+++++
T Consensus 116 ~~dEE~g~~G~~~~~~~~ 133 (347)
T PRK08652 116 VSDEEEGGRGSALFAERY 133 (347)
T ss_pred ecCcccCChhHHHHHHhc
Confidence 999999888999988764
No 88
>PRK06156 hypothetical protein; Provisional
Probab=97.15 E-value=0.002 Score=74.11 Aligned_cols=89 Identities=18% Similarity=0.152 Sum_probs=68.6
Q ss_pred eeEE--EEecCCCCCCcEEEEEeccCCcCC---------------------------CCCCCchHHHHHHHHHHHHHHhH
Q 005347 325 QNVI--GIIPGTEEPDRLVILGNHRDAWTF---------------------------GAVDPNSGTAALLEVAQRLNKLQ 375 (701)
Q Consensus 325 ~NVi--a~i~G~~~~~~~Ivl~aH~Ds~~~---------------------------GA~DnasG~A~lLElAr~l~~~~ 375 (701)
.|++ ++++|.. .+.|++.+|+|.++. |+.|+-.|++++|.+++.|.+
T Consensus 96 ~~~v~~~~~~g~~--~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~-- 171 (520)
T PRK06156 96 DNRVLEIGLGGSG--SDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKD-- 171 (520)
T ss_pred CCeEEEEEecCCC--CCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHH--
Confidence 3544 6777643 457999999998741 788999999999998887754
Q ss_pred HcCCCCCCcEEEEeeCcccCCCcchHHHHHHHHHhhhccEEEEEEecC
Q 005347 376 KRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDS 423 (701)
Q Consensus 376 ~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~ 423 (701)
.+.+++++|+|++...||.|..|+.+|++++. +....+|+|.
T Consensus 172 -~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~-----~~~~~~~~D~ 213 (520)
T PRK06156 172 -SGLPLARRIELLVYTTEETDGDPLKYYLERYT-----PPDYNITLDA 213 (520)
T ss_pred -cCCCCCceEEEEEecccccCchhHHHHHHhcC-----CCCeEEeeCC
Confidence 45577889999999999999999999987642 2344577775
No 89
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.14 E-value=0.0015 Score=71.08 Aligned_cols=75 Identities=28% Similarity=0.358 Sum_probs=60.1
Q ss_pred eeEEEEecCCCCCCcEEEEEeccCCcC----------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEE
Q 005347 325 QNVIGIIPGTEEPDRLVILGNHRDAWT----------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLC 388 (701)
Q Consensus 325 ~NVia~i~G~~~~~~~Ivl~aH~Ds~~----------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~ 388 (701)
.|+++++.+.. .+.|++.+|+|+++ .|+.|+.+|+|++|.+++.|. +++++|.|+
T Consensus 50 ~~~~~~~~~~~--~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~-------~~~~~i~~~ 120 (352)
T PRK13007 50 NSVVARTDLGR--PSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLA-------EPAHDLTLV 120 (352)
T ss_pred CeEEEEccCCC--CCeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhh-------ccCCCeEEE
Confidence 58999995332 23699999999975 299999999999999999883 467899999
Q ss_pred eeCcccCCC--cchHHHHHHHH
Q 005347 389 NWDAEEYGL--IGSTEWVEENR 408 (701)
Q Consensus 389 ~~~~EE~Gl--~GS~~~~~~~~ 408 (701)
+.+.||.|- .|+..++.++.
T Consensus 121 ~~~~EE~~~~~~G~~~~~~~~~ 142 (352)
T PRK13007 121 FYDCEEVEAEANGLGRLAREHP 142 (352)
T ss_pred EEecccccCCcccHHHHHHhcc
Confidence 999999854 58887776543
No 90
>PRK08554 peptidase; Reviewed
Probab=97.13 E-value=0.0023 Score=72.03 Aligned_cols=92 Identities=21% Similarity=0.203 Sum_probs=68.9
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcC----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p 381 (701)
..|+++.+ |.. ++.|++.+|+|.++ .|+.|+-+|++++|.+++.|.+. .+
T Consensus 52 ~~~l~~~~-~~~--~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~-----~~ 123 (438)
T PRK08554 52 YYAVYGEI-GEG--KPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE-----PL 123 (438)
T ss_pred ceEEEEEe-CCC--CCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc-----CC
Confidence 37999997 432 46799999999862 29999999999999999988652 35
Q ss_pred CCcEEEEeeCcccCCCcchHHHHHHHHHhhhccEEEEEEecCc
Q 005347 382 RRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSA 424 (701)
Q Consensus 382 ~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~ 424 (701)
+++|+|++...||.|..|+..+++..... ..+..+.|+.|..
T Consensus 124 ~~~i~l~~~~dEE~g~~~~~~~~~~~~~~-~~~~~~~iv~Ept 165 (438)
T PRK08554 124 NGKVIFAFTGDEEIGGAMAMHIAEKLREE-GKLPKYMINADGI 165 (438)
T ss_pred CCCEEEEEEcccccCccccHHHHHHHHhc-CCCCCEEEEeCCC
Confidence 67899999999999877777666654322 1234556777764
No 91
>PRK13004 peptidase; Reviewed
Probab=97.09 E-value=0.002 Score=71.53 Aligned_cols=76 Identities=24% Similarity=0.291 Sum_probs=61.0
Q ss_pred eeEEEEecCCCCCCcEEEEEeccCCcCC-----------------------CCCCCchHHHHHHHHHHHHHHhHHcCCCC
Q 005347 325 QNVIGIIPGTEEPDRLVILGNHRDAWTF-----------------------GAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (701)
Q Consensus 325 ~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-----------------------GA~DnasG~A~lLElAr~l~~~~~~g~~p 381 (701)
.|++|.+.|. .+.|++.+|+|+++. |+.|+-+|++++|.+++.|.+ .+.++
T Consensus 59 ~n~~a~~~~~---~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~---~~~~~ 132 (399)
T PRK13004 59 GNVLGYIGHG---KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKD---LGLDD 132 (399)
T ss_pred CeEEEEECCC---CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHh---cCCCC
Confidence 5899999763 268999999999752 677888999999999998865 35577
Q ss_pred CCcEEEEeeCcccC-CCcchHHHHHH
Q 005347 382 RRTIVLCNWDAEEY-GLIGSTEWVEE 406 (701)
Q Consensus 382 ~rtI~F~~~~~EE~-Gl~GS~~~~~~ 406 (701)
+++|.|++..+||. |-.|+..++++
T Consensus 133 ~~~i~~~~~~~EE~~~g~~~~~~~~~ 158 (399)
T PRK13004 133 EYTLYVTGTVQEEDCDGLCWRYIIEE 158 (399)
T ss_pred CCeEEEEEEcccccCcchhHHHHHHh
Confidence 89999999999995 34577776654
No 92
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=97.07 E-value=0.0024 Score=71.18 Aligned_cols=97 Identities=26% Similarity=0.271 Sum_probs=77.0
Q ss_pred eeeeEEEEecCCCCCCcEEEEEeccCCcC-----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCC
Q 005347 323 TIQNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGW 379 (701)
Q Consensus 323 ~~~NVia~i~G~~~~~~~Ivl~aH~Ds~~-----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~ 379 (701)
...|+++++.|... ++.|++++|+|.++ -|+.|+-.++++++.+++.+... |.
T Consensus 61 ~~~n~~~~~~~~~~-~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~---~~ 136 (409)
T COG0624 61 GRPNLVARLGGGDG-GPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAA---GG 136 (409)
T ss_pred CceEEEEEecCCCC-CCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHh---CC
Confidence 35699999988753 48999999999973 19999999999999999887653 44
Q ss_pred CCCCcEEEEeeCcccCCCcchHHHHHHHHHhhhccEEEEEEecC
Q 005347 380 KPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDS 423 (701)
Q Consensus 380 ~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~ 423 (701)
.++++|+|++...||.|-.|...|++++...+..+..+.|..+.
T Consensus 137 ~~~~~v~~~~~~dEE~g~~~~~~~~~~~~~~~~~~~d~~i~~E~ 180 (409)
T COG0624 137 ELPGDVRLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEP 180 (409)
T ss_pred CCCeEEEEEEEeccccCCcchHHHHHhcchhhccCCCEEEeCCC
Confidence 77899999999999999999999999876533334444555554
No 93
>PRK07205 hypothetical protein; Provisional
Probab=96.97 E-value=0.003 Score=71.21 Aligned_cols=75 Identities=20% Similarity=0.106 Sum_probs=61.9
Q ss_pred eEEEEecCCCCCCcEEEEEeccCCcC-----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCC
Q 005347 326 NVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPR 382 (701)
Q Consensus 326 NVia~i~G~~~~~~~Ivl~aH~Ds~~-----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~ 382 (701)
++++++ |.. .+.|++.+|+|.++ -|+.|+-.|+|++|...+.|.+ .|.+++
T Consensus 66 ~~~~~~-g~~--~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~---~~~~~~ 139 (444)
T PRK07205 66 YGYAEI-GQG--EELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLD---AGVQFN 139 (444)
T ss_pred EEEEEe-cCC--CcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHH---cCCCCC
Confidence 566665 533 46799999999963 1999999999999998887754 566788
Q ss_pred CcEEEEeeCcccCCCcchHHHHHH
Q 005347 383 RTIVLCNWDAEEYGLIGSTEWVEE 406 (701)
Q Consensus 383 rtI~F~~~~~EE~Gl~GS~~~~~~ 406 (701)
++|+|++...||.|..|+..|++.
T Consensus 140 ~~i~l~~~~dEE~g~~g~~~~~~~ 163 (444)
T PRK07205 140 KRIRFIFGTDEETLWRCMNRYNEV 163 (444)
T ss_pred CcEEEEEECCcccCcccHHHHHhC
Confidence 999999999999998999998864
No 94
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=96.94 E-value=0.0031 Score=69.51 Aligned_cols=79 Identities=25% Similarity=0.300 Sum_probs=62.1
Q ss_pred eEEEEecCCCCCCcEEEEEeccCCcC------------------------C---------CCCCCchHHHHHHHHHHHHH
Q 005347 326 NVIGIIPGTEEPDRLVILGNHRDAWT------------------------F---------GAVDPNSGTAALLEVAQRLN 372 (701)
Q Consensus 326 NVia~i~G~~~~~~~Ivl~aH~Ds~~------------------------~---------GA~DnasG~A~lLElAr~l~ 372 (701)
||+|++.+.. .+.|++.+|+|+++ . |+.|+-+|+|++|.+++.|.
T Consensus 42 nvva~~~~~~--~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~ 119 (373)
T TIGR01900 42 NVLARTDFGK--ASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLD 119 (373)
T ss_pred EEEEecCCCC--CCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHh
Confidence 9999985432 46799999999862 1 88899999999999999885
Q ss_pred HhHHcCCCCCCcEEEEeeCcccCC--CcchHHHHHHH
Q 005347 373 KLQKRGWKPRRTIVLCNWDAEEYG--LIGSTEWVEEN 407 (701)
Q Consensus 373 ~~~~~g~~p~rtI~F~~~~~EE~G--l~GS~~~~~~~ 407 (701)
+. +.+..++.+|.|++..+||.| ..|+..+++++
T Consensus 120 ~~-~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~ 155 (373)
T TIGR01900 120 GR-APETELKHDLTLIAYDCEEVAAEKNGLGHIRDAH 155 (373)
T ss_pred hh-ccccCCCCCEEEEEEecccccCCCCCHHHHHHhC
Confidence 42 123467789999999999975 35998888764
No 95
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=96.88 E-value=0.0045 Score=69.89 Aligned_cols=66 Identities=23% Similarity=0.209 Sum_probs=56.9
Q ss_pred CcEEEEEeccCCcC---------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCC
Q 005347 338 DRLVILGNHRDAWT---------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYG 396 (701)
Q Consensus 338 ~~~Ivl~aH~Ds~~---------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~G 396 (701)
.+.|++.+|+|.++ .|+.|+-.|++++|.+++.|.+ .+.+|+++|+|++...||.|
T Consensus 67 ~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~---~~~~~~~~i~~~~~~dEE~g 143 (447)
T TIGR01887 67 EEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKE---LGLKLKKKIRFIFGTDEETG 143 (447)
T ss_pred CCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHH---cCCCCCCcEEEEEECCcccC
Confidence 45799999999763 1899999999999999988764 45678899999999999999
Q ss_pred CcchHHHHHH
Q 005347 397 LIGSTEWVEE 406 (701)
Q Consensus 397 l~GS~~~~~~ 406 (701)
..|+.+|+++
T Consensus 144 ~~g~~~~l~~ 153 (447)
T TIGR01887 144 WACIDYYFEH 153 (447)
T ss_pred cHhHHHHHHh
Confidence 9999999875
No 96
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=96.87 E-value=0.0031 Score=69.85 Aligned_cols=76 Identities=33% Similarity=0.371 Sum_probs=61.3
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcCC----------------------CCCCCchHHHHHHHHHHHHHHhHHcCCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF----------------------GAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~----------------------GA~DnasG~A~lLElAr~l~~~~~~g~~p 381 (701)
..||++.. |.. ++.|++.+|+|+++. |+.|+-.|++++|++++.|.+ .+
T Consensus 63 ~~~~~~~~-~~~--~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~---~~--- 133 (394)
T PRK08651 63 RPNLIARR-GSG--NPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDP---AG--- 133 (394)
T ss_pred cceEEEEe-CCC--CceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHh---cC---
Confidence 46888875 432 378999999997631 678899999999999998754 22
Q ss_pred CCcEEEEeeCcccCCCcchHHHHHHHH
Q 005347 382 RRTIVLCNWDAEEYGLIGSTEWVEENR 408 (701)
Q Consensus 382 ~rtI~F~~~~~EE~Gl~GS~~~~~~~~ 408 (701)
+++|+|++..+||.|..|+.+++++..
T Consensus 134 ~~~v~~~~~~~EE~g~~G~~~~~~~~~ 160 (394)
T PRK08651 134 DGNIELAIVPDEETGGTGTGYLVEEGK 160 (394)
T ss_pred CCCEEEEEecCccccchhHHHHHhccC
Confidence 689999999999998899999887653
No 97
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=96.86 E-value=0.0034 Score=67.98 Aligned_cols=73 Identities=25% Similarity=0.280 Sum_probs=60.2
Q ss_pred eeEEEEecCCCCCCcEEEEEeccCCcC--------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEee
Q 005347 325 QNVIGIIPGTEEPDRLVILGNHRDAWT--------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNW 390 (701)
Q Consensus 325 ~NVia~i~G~~~~~~~Ivl~aH~Ds~~--------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~ 390 (701)
.|+++.. |.. .+.|++.+|+|.++ .|+.|+-+|+|++|++.+.|.+. ..+|.|++.
T Consensus 40 ~~~~~~~-~~~--~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~-------~~~i~~~~~ 109 (336)
T TIGR01902 40 GNFILGK-GDG--HKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK-------GIKVIVSGL 109 (336)
T ss_pred CcEEEEe-CCC--CceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC-------CCcEEEEEE
Confidence 4788765 432 46899999999973 19999999999999999988542 357999999
Q ss_pred CcccCCCcchHHHHHHH
Q 005347 391 DAEEYGLIGSTEWVEEN 407 (701)
Q Consensus 391 ~~EE~Gl~GS~~~~~~~ 407 (701)
..||.|..|+.++++++
T Consensus 110 ~dEE~g~~G~~~~~~~~ 126 (336)
T TIGR01902 110 VDEESSSKGAREVIDKN 126 (336)
T ss_pred eCcccCCccHHHHHhhc
Confidence 99999999999988774
No 98
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=96.86 E-value=0.0035 Score=68.66 Aligned_cols=76 Identities=34% Similarity=0.362 Sum_probs=58.3
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcCC-------------------CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCc
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-------------------GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRT 384 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-------------------GA~DnasG~A~lLElAr~l~~~~~~g~~p~rt 384 (701)
..||+++++|.. +.+.|++.+|+|+++. |+ .+++|++|.+++.|.+.. .+++++
T Consensus 43 ~~~vva~~~~~~-~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~---~~~~a~~l~a~~~l~~~~---~~~~~~ 115 (363)
T TIGR01891 43 ATGVVATIGGGK-PGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGH---DLHTAILLGTAKLLKKLA---DLLEGT 115 (363)
T ss_pred CcEEEEEEeCCC-CCCEEEEEeccCCCCcccccCCCcccCCCCceecCcC---HHHHHHHHHHHHHHHhch---hhCCce
Confidence 379999997643 2478999999999852 22 267888888888876542 356789
Q ss_pred EEEEeeCcccCCCcchHHHHHHH
Q 005347 385 IVLCNWDAEEYGLIGSTEWVEEN 407 (701)
Q Consensus 385 I~F~~~~~EE~Gl~GS~~~~~~~ 407 (701)
|.|++..+||.| .|+.+++++.
T Consensus 116 i~~~~~~dEE~~-~G~~~~~~~~ 137 (363)
T TIGR01891 116 VRLIFQPAEEGG-GGATKMIEDG 137 (363)
T ss_pred EEEEEeecCcCc-chHHHHHHCC
Confidence 999999999986 7998887653
No 99
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=96.61 E-value=0.0082 Score=68.42 Aligned_cols=90 Identities=24% Similarity=0.234 Sum_probs=66.2
Q ss_pred eeeeEEEEecCCC--CCCcEEEEEeccCCcCC--------------------------CC---CCCchHHHHHHHHHHHH
Q 005347 323 TIQNVIGIIPGTE--EPDRLVILGNHRDAWTF--------------------------GA---VDPNSGTAALLEVAQRL 371 (701)
Q Consensus 323 ~~~NVia~i~G~~--~~~~~Ivl~aH~Ds~~~--------------------------GA---~DnasG~A~lLElAr~l 371 (701)
...|+++.+++.. +..+.|++.+|+|.++. |+ .|+..|+|++|.+.+
T Consensus 51 ~~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l~-- 128 (485)
T PRK15026 51 QVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLA-- 128 (485)
T ss_pred ecCeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHHH--
Confidence 3469999987531 23567999999998731 55 499999999887642
Q ss_pred HHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHHHHHHhhhccEEEEEEecCc
Q 005347 372 NKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSA 424 (701)
Q Consensus 372 ~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~ 424 (701)
+.+. +...|.|++...||.|+.||.++... ..+..+.||+|..
T Consensus 129 ----~~~~-~~~~i~~l~t~dEE~G~~ga~~l~~~-----~~~~~~~i~~e~~ 171 (485)
T PRK15026 129 ----DENV-VHGPLEVLLTMTEEAGMDGAFGLQSN-----WLQADILINTDSE 171 (485)
T ss_pred ----hCCC-CCCCEEEEEEcccccCcHhHHHhhhc-----cCCcCEEEEeCCC
Confidence 2232 36689999999999999999987432 1356778999875
No 100
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=96.57 E-value=0.024 Score=61.59 Aligned_cols=128 Identities=18% Similarity=0.180 Sum_probs=81.3
Q ss_pred CCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHHHHHHhhhccEEEEEEecCc---------c
Q 005347 355 VDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAVAYLNIDSA---------V 425 (701)
Q Consensus 355 ~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~l~~~~va~iNlD~~---------g 425 (701)
.||-+|++++++++|.|.+ .++++.++|.|++...||.| .|+..-+ ..++.-+|.+|+. |
T Consensus 182 ~D~K~G~a~~l~~~~~l~~---~~~~~~~~v~~~~t~qEEvG-~gaa~~i-------~pd~a~~i~vd~~~~~p~~~~lg 250 (343)
T TIGR03106 182 LDDKAGVAALLAALKAIVE---HKVPLPVDVHPLFTITEEVG-SGASHAL-------PPDVAELVSVDNGTVAPGQNSSE 250 (343)
T ss_pred cccHHhHHHHHHHHHHHHh---cCCCCCceEEEEEECCcccC-ccchhcc-------cHhhhccEEEEecccCCCCCcCC
Confidence 6899999999999998864 34568899999999999999 5642211 1222234556633 2
Q ss_pred cCCccc-----cccChhHHHHHHHHHHHcCCCCCCcchhhhccccCCCCCccccCCCCCCchHhHHh-cCCceEEEeeeC
Q 005347 426 HEAGFH-----ASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQ-HIGVPVADMSFG 499 (701)
Q Consensus 426 ~g~~~~-----~~~~p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~SD~~~F~~-~~GIPs~~~~~~ 499 (701)
.|+.+. .-.+|.+.+.+.+++++..-|.. ......+|||-..+.. ..|||++.++..
T Consensus 251 ~Gp~i~~~d~~~~~~~~l~~~l~~~A~~~~Ip~Q-----------------~~~~~~~gtDa~~~~~~~~Gi~t~~i~iP 313 (343)
T TIGR03106 251 HGVTIAMADSSGPFDYHLTRKLIRLCQDHGIPHR-----------------RDVFRYYRSDAASAVEAGHDIRTALVTFG 313 (343)
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHHcCCCcE-----------------EEecCCCCChHHHHHHcCCCCCEEEeecc
Confidence 233331 12357788888888887554432 1111115778777644 359999988752
Q ss_pred CCCCcCCCCcccHH
Q 005347 500 TGYPVYHSMYDDFI 513 (701)
Q Consensus 500 ~~~~~yHT~~Dt~~ 513 (701)
-.+-|| +...+
T Consensus 314 --~Ry~Hs-~e~~~ 324 (343)
T TIGR03106 314 --LDASHG-YERTH 324 (343)
T ss_pred --ccchhh-hhhcc
Confidence 234577 66554
No 101
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=96.54 E-value=0.0064 Score=65.55 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhhccCCCCchhHHHHhhccCCCChhHHHHHHHHhhcC--CCCCCCHhhHHHHHHHHHHHHHCCCceee
Q 005347 6 ITCFLAIATSFSFLLSSPQPKSFYHSLYTSTSLSDNVSISHHLHTLTRR--PHVAGSEANAEAAAYVLSVFTSCSLESHI 83 (701)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~ls~~--~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~ 83 (701)
.+|+=.+++.++++++.|-... . ....+-..++++.++.. +|.+||+++.++++||+++|+++|++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~a~~~~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~~v~~ 74 (346)
T PRK10199 4 ALRHRTAALALGVCFILPVQAA-------S--PKPGDFANTQARHIATFFPGRMTGSPAEMLSADYLRQQFQQMGYQSDI 74 (346)
T ss_pred HHHHHHHHHHHHHHhhcccccc-------c--CCccchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCCCceEe
Confidence 3444444555555554443311 1 22355667888888886 89999999999999999999999999877
Q ss_pred eeeE
Q 005347 84 ASYG 87 (701)
Q Consensus 84 ~~y~ 87 (701)
++|.
T Consensus 75 q~f~ 78 (346)
T PRK10199 75 RTFN 78 (346)
T ss_pred eecc
Confidence 6665
No 102
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=96.53 E-value=0.0098 Score=65.27 Aligned_cols=78 Identities=26% Similarity=0.285 Sum_probs=60.6
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcCC-----------------------CCCCCchHHHHHHHHHHHHHHhHHcCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-----------------------GAVDPNSGTAALLEVAQRLNKLQKRGWK 380 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-----------------------GA~DnasG~A~lLElAr~l~~~~~~g~~ 380 (701)
..|++++. |. +.+.|++.+|+|+++. |+.|+-.|++++|..++.+.+ .+.+
T Consensus 44 ~~~~~~~~-g~--~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~---~~~~ 117 (370)
T TIGR01246 44 TKNLWATR-GT--GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVK---KNPD 117 (370)
T ss_pred CceEEEEe-cC--CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHH---hcCC
Confidence 36999986 43 2578999999999631 777999999999998876654 3446
Q ss_pred CCCcEEEEeeCcccCC-CcchHHHHHHH
Q 005347 381 PRRTIVLCNWDAEEYG-LIGSTEWVEEN 407 (701)
Q Consensus 381 p~rtI~F~~~~~EE~G-l~GS~~~~~~~ 407 (701)
++.+|+|++..+||.| ..|+...++..
T Consensus 118 ~~~~v~~~~~~dEE~~~~~G~~~~~~~~ 145 (370)
T TIGR01246 118 HKGSISLLITSDEEGTAIDGTKKVVETL 145 (370)
T ss_pred CCCcEEEEEEeccccCCCcCHHHHHHHH
Confidence 6789999999999976 47999877643
No 103
>PLN02693 IAA-amino acid hydrolase
Probab=96.51 E-value=0.0077 Score=67.80 Aligned_cols=78 Identities=35% Similarity=0.403 Sum_probs=60.2
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcCCC----------------CCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEE
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTFG----------------AVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVL 387 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~G----------------A~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F 387 (701)
..||+|++ |.. +.+.|++.+|+|+++.+ +.|--+++|++|.+++.|.+.. .+.+.+|+|
T Consensus 90 ~~~via~~-g~~-~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~---~~~~g~V~~ 164 (437)
T PLN02693 90 ITGIIGYI-GTG-EPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHR---HHLQGTVVL 164 (437)
T ss_pred CcEEEEEE-CCC-CCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCc---ccCCceEEE
Confidence 48999999 432 25789999999998631 4555568999999999987642 234678999
Q ss_pred EeeCcccCCCcchHHHHHHH
Q 005347 388 CNWDAEEYGLIGSTEWVEEN 407 (701)
Q Consensus 388 ~~~~~EE~Gl~GS~~~~~~~ 407 (701)
++..+|| +..|+..++++.
T Consensus 165 if~pdEE-~~~Ga~~~i~~g 183 (437)
T PLN02693 165 IFQPAEE-GLSGAKKMREEG 183 (437)
T ss_pred EEEEccc-chhhHHHHHHCC
Confidence 9999999 557998888763
No 104
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=96.51 E-value=0.0054 Score=66.76 Aligned_cols=61 Identities=28% Similarity=0.390 Sum_probs=52.2
Q ss_pred EEEEEeccCCcC--------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHH
Q 005347 340 LVILGNHRDAWT--------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVE 405 (701)
Q Consensus 340 ~Ivl~aH~Ds~~--------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~ 405 (701)
.|++.+|+|+++ .|+.|+-+|+|++|.+++.|.+ .| .+|.|++..+||.|..|+.++++
T Consensus 62 ~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~---~~----~~i~~~~~~dEE~g~~G~~~l~~ 134 (346)
T PRK00466 62 DILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNE---KG----IKVMVSGLADEESTSIGAKELVS 134 (346)
T ss_pred eEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHH---cC----CCEEEEEEcCcccCCccHHHHHh
Confidence 599999999985 2999999999999999998754 23 35899999999999899999887
Q ss_pred HH
Q 005347 406 EN 407 (701)
Q Consensus 406 ~~ 407 (701)
+.
T Consensus 135 ~~ 136 (346)
T PRK00466 135 KG 136 (346)
T ss_pred cC
Confidence 64
No 105
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=96.32 E-value=0.016 Score=63.03 Aligned_cols=98 Identities=22% Similarity=0.241 Sum_probs=76.2
Q ss_pred eeeeEEEEecCCCCCCcEEEEEeccCCc--------------------------------------------CCCCCCCc
Q 005347 323 TIQNVIGIIPGTEEPDRLVILGNHRDAW--------------------------------------------TFGAVDPN 358 (701)
Q Consensus 323 ~~~NVia~i~G~~~~~~~Ivl~aH~Ds~--------------------------------------------~~GA~Dna 358 (701)
.-.||.|-|+|. .+.+.||+.+|+|++ +-|+.|--
T Consensus 64 gR~nv~AlVrg~-~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMK 142 (553)
T COG4187 64 GRRNVFALVRGG-TSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMK 142 (553)
T ss_pred ccceeEEEEecC-CCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhh
Confidence 457999999994 458999999999998 12999999
Q ss_pred hHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHHHHH---HhhhccEEEEEEecCcc
Q 005347 359 SGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENR---EMLASRAVAYLNIDSAV 425 (701)
Q Consensus 359 sG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~---~~l~~~~va~iNlD~~g 425 (701)
||.|+-|.+-..|++-. ..+-+|.|++...||....|.++-+.... ....-...+.||+|.++
T Consensus 143 sGlav~la~L~~fa~~~----~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~ 208 (553)
T COG4187 143 SGLAVHLACLEEFAART----DRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTS 208 (553)
T ss_pred hhhHHHHHHHHHHhhCC----CCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEecccccc
Confidence 99999988777776521 33567999999999988888887655433 22234678899999874
No 106
>PLN02280 IAA-amino acid hydrolase
Probab=96.11 E-value=0.017 Score=65.83 Aligned_cols=76 Identities=25% Similarity=0.235 Sum_probs=58.4
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcCC-----------------CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEE
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWTF-----------------GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIV 386 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-----------------GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~ 386 (701)
..||+|++ |... ++.|++.+|+|+++. |-+-+ .++|++|.+++.|.+. +.+++-+|+
T Consensus 140 ~~~vva~~-g~~~-~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd-~~~A~~l~a~~~L~~~---~~~~~g~V~ 213 (478)
T PLN02280 140 KTGIRAWI-GTGG-PPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHD-AHVAMLLGAAKILKSR---EHLLKGTVV 213 (478)
T ss_pred CCEEEEEE-CCCC-CCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCc-HHHHHHHHHHHHHHhc---cccCCceEE
Confidence 46999998 6433 478999999999863 11222 3899999999988753 235677999
Q ss_pred EEeeCcccCCCcchHHHHHH
Q 005347 387 LCNWDAEEYGLIGSTEWVEE 406 (701)
Q Consensus 387 F~~~~~EE~Gl~GS~~~~~~ 406 (701)
|++-.+||.|. |+.+.+++
T Consensus 214 ~if~pdEE~g~-Ga~~li~~ 232 (478)
T PLN02280 214 LLFQPAEEAGN-GAKRMIGD 232 (478)
T ss_pred EEecccccccc-hHHHHHHC
Confidence 99999999974 99988775
No 107
>PRK02256 putative aminopeptidase 1; Provisional
Probab=95.95 E-value=0.048 Score=61.42 Aligned_cols=153 Identities=21% Similarity=0.159 Sum_probs=90.6
Q ss_pred EEEEeccCCcCCCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHH----HHHHHhhhccE-
Q 005347 341 VILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWV----EENREMLASRA- 415 (701)
Q Consensus 341 Ivl~aH~Ds~~~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~----~~~~~~l~~~~- 415 (701)
-++|.+.+=....+.||-.|+.+++|..+.+. .+..++++++|+-||.|+.|++--. ++....+...+
T Consensus 245 ~~~G~~~efI~s~rLDNr~~~~~~leal~~~~-------~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~~~l~Ri~~~~~ 317 (462)
T PRK02256 245 RDVGLDRSLIGAYGQDDRVCAYTSLEALLELE-------NPEKTAVVLLVDKEEIGSEGNTGAQSRFFENFVAELLAKTE 317 (462)
T ss_pred ceeccccceeeccccccHHHHHHHHHHHHhcc-------cCCCeEEEEEEcccccCCcchhhhcchhHHHHHHHHHHhcC
Confidence 34455555444578999999999999887542 3567899999999999987765422 22111111111
Q ss_pred --------------EEEEEecCccc-------------------CCccc-c-------cc---ChhHHHHHHHHHHHcCC
Q 005347 416 --------------VAYLNIDSAVH-------------------EAGFH-A-------SA---TPQLDELLKQAAKQVQD 451 (701)
Q Consensus 416 --------------va~iNlD~~g~-------------------g~~~~-~-------~~---~p~l~~~~~~~~~~v~~ 451 (701)
-..|.+|++-. |+.+. . .+ ++.+...+.+.+++..-
T Consensus 318 pd~~~~~~~~~~~~S~~IS~Dvaha~hPn~~~~~~~~~~~~Lg~GpvIk~~d~~~~~y~t~~~~~~~~~~i~~iA~~~~I 397 (462)
T PRK02256 318 GNYSDLKLRRALANSKALSADVSAAFDPNYPSVHEKQNAAYLGYGVVFTKYTGSRGKYGANDANAEFVAEVRNLFNKNNV 397 (462)
T ss_pred CCcchHHHHHHHhccEEEEEeCCCCCCCCCCcccCcccCccCCCCcEEEEEcCCCCcccccCCCHHHHHHHHHHHHHcCC
Confidence 14577787521 22221 1 12 56667777777776544
Q ss_pred CCCCcchhhhccccCCCCCccccCCCCCCchHhHHhcCCceEEEeeeCCCCCcCCCCcccHHHH
Q 005347 452 PDNSSQTIYDSWTGSSNSPVIGRLGGGGSDYAAFIQHIGVPVADMSFGTGYPVYHSMYDDFIWM 515 (701)
Q Consensus 452 p~~~~~~~~~~~~~~~~~~~~~~~~~~~SD~~~F~~~~GIPs~~~~~~~~~~~yHT~~Dt~~~i 515 (701)
|.. ..+ . .+.+..+ +++| .|.+.+.|||+++++- +--+-||+..+...-
T Consensus 398 p~Q---~~~---~-----~r~d~~~-GgTi-g~~~s~~Gi~tvdiGi--P~l~MHS~rE~~~~~ 446 (462)
T PRK02256 398 VWQ---TAE---L-----GKVDQGG-GGTI-AKFLANYGMEVIDCGV--ALLSMHSPFEIASKA 446 (462)
T ss_pred CEE---EEE---e-----ecCCCCC-cChH-HHHHcCCCCcEEEech--hhhccccHHHHhhHH
Confidence 422 100 0 0112223 5777 5666678999999964 223569988876643
No 108
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=95.93 E-value=0.028 Score=62.35 Aligned_cols=76 Identities=25% Similarity=0.312 Sum_probs=57.9
Q ss_pred eeEEEEecCCCCCCcEEEEEeccCCcC-----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCC
Q 005347 325 QNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (701)
Q Consensus 325 ~NVia~i~G~~~~~~~Ivl~aH~Ds~~-----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p 381 (701)
.||++.+ |.. .+.|++.+|+|.++ .|+.|+-+|++++|.+++.|.+ .+.++
T Consensus 57 ~~v~~~~-g~~--~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~---~~~~~ 130 (395)
T TIGR03526 57 GNVLGYI-GHG--PKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKD---LGLLD 130 (395)
T ss_pred CcEEEEe-CCC--CCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHH---cCCCC
Confidence 5899998 533 36799999999863 2899999999999999998765 45567
Q ss_pred CCcEEEEeeCcccC-CCcchHHHHHH
Q 005347 382 RRTIVLCNWDAEEY-GLIGSTEWVEE 406 (701)
Q Consensus 382 ~rtI~F~~~~~EE~-Gl~GS~~~~~~ 406 (701)
+++|.|++..+||. +-.|+..++++
T Consensus 131 ~~~v~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03526 131 DYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred CceEEEEEecccccCCcHhHHHHHhc
Confidence 78899988888883 33455555543
No 109
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.73 E-value=0.025 Score=61.98 Aligned_cols=93 Identities=25% Similarity=0.202 Sum_probs=65.1
Q ss_pred eeEEEecCCChhc-hHHHHhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCC
Q 005347 145 GPVVYVNYGRVED-YVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRKDYGGGSDDARWFPDDKWMP 223 (701)
Q Consensus 145 g~lVyv~~G~~~D-~~~L~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp~~~~~~~~~~~~yP~~~~~p 223 (701)
+.+-+.+.+.+-| ... ....++||++++-.|+|.+-.|++.|+++||.|++++++.+|.-. |
T Consensus 73 a~~~~~a~~~pld~cs~---~~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~--------~------ 135 (541)
T KOG2442|consen 73 ADIPHLAQVDPLDSCST---LQSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLF--------M------ 135 (541)
T ss_pred cccchhhhcCCccccCC---CCccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhcc--------C------
Confidence 4455555555444 111 134789999999999999999999999999999999998654321 0
Q ss_pred CCCceecceecCCCCCCCCCCCCCCcccccChHHHhhhCCCCCCCccccCHHHHHHHHHHhC
Q 005347 224 PSGVQVGSVYDGTGDPTTPGWPSSEGCERLSKEEVEKAGNVPLIPSLPISAKDGETIMRSIG 285 (701)
Q Consensus 224 ~~~v~rg~v~~~~Gdp~tPg~ps~~~~~r~~~~~~~~~~~~~~IP~~~is~~~a~~Ll~~l~ 285 (701)
.-|++.| ..--+||++.|+++++..|.+...
T Consensus 136 -----------~~~~~~~--------------------~~dv~IPv~mi~~~~~~~l~~~~~ 166 (541)
T KOG2442|consen 136 -----------PCGNKET--------------------SLDVTIPVAMISYSDGRDLNKSTR 166 (541)
T ss_pred -----------CCCCCCc--------------------cccccceEEEEEhhhHHHHHhhhc
Confidence 0112110 123589999999999999987553
No 110
>PRK08737 acetylornithine deacetylase; Provisional
Probab=95.66 E-value=0.035 Score=60.93 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=55.2
Q ss_pred eeeEEEEecCCCCCCcEEEEEeccCCcC---------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCC
Q 005347 324 IQNVIGIIPGTEEPDRLVILGNHRDAWT---------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPR 382 (701)
Q Consensus 324 ~~NVia~i~G~~~~~~~Ivl~aH~Ds~~---------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~ 382 (701)
..|+++. +|. +.|++.+|+|+++ .|+.|.-+|+|++|.+++. +.
T Consensus 54 ~~nli~~-~g~----~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~----------~~ 118 (364)
T PRK08737 54 AVSLYAV-RGT----PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA----------GD 118 (364)
T ss_pred ceEEEEE-cCC----CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc----------cC
Confidence 4689986 453 3699999999963 1999998999999988763 24
Q ss_pred CcEEEEeeCcccCCC-cchHHHHHHH
Q 005347 383 RTIVLCNWDAEEYGL-IGSTEWVEEN 407 (701)
Q Consensus 383 rtI~F~~~~~EE~Gl-~GS~~~~~~~ 407 (701)
.+|.|++...||.|. .|+..+++..
T Consensus 119 ~~v~~~~~~dEE~g~~~g~~~~~~~~ 144 (364)
T PRK08737 119 GDAAFLFSSDEEANDPRCVAAFLARG 144 (364)
T ss_pred CCEEEEEEcccccCchhhHHHHHHhC
Confidence 679999999999886 6888888763
No 111
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=95.51 E-value=0.048 Score=60.44 Aligned_cols=75 Identities=24% Similarity=0.291 Sum_probs=56.5
Q ss_pred eeEEEEecCCCCCCcEEEEEeccCCcC-----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCC
Q 005347 325 QNVIGIIPGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKP 381 (701)
Q Consensus 325 ~NVia~i~G~~~~~~~Ivl~aH~Ds~~-----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p 381 (701)
.|++|.+ |.. .+.|++.+|+|+++ .|+.|+-+|+|++|.+++.|.+ .|.++
T Consensus 57 ~n~~~~~-g~~--~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~---~g~~~ 130 (395)
T TIGR03320 57 GNVLGYI-GHG--PKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKD---LGLLD 130 (395)
T ss_pred CCEEEEe-CCC--CcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHH---cCCCC
Confidence 5899988 532 46799999999853 2999999999999999998764 45567
Q ss_pred CCcEEEEeeCcccCC-CcchHHHHH
Q 005347 382 RRTIVLCNWDAEEYG-LIGSTEWVE 405 (701)
Q Consensus 382 ~rtI~F~~~~~EE~G-l~GS~~~~~ 405 (701)
..+|.|++..+||.+ -.|+..+++
T Consensus 131 ~~~i~~~~~~dEE~~~g~~~~~~~~ 155 (395)
T TIGR03320 131 DYTLLVTGTVQEEDCDGLCWQYIIE 155 (395)
T ss_pred CceEEEEecccccccCchHHHHHHH
Confidence 789999988888864 233444444
No 112
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=94.92 E-value=0.16 Score=57.47 Aligned_cols=145 Identities=17% Similarity=0.131 Sum_probs=85.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchHHHHHHHHHhhhccEE----------------
Q 005347 353 GAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGSTEWVEENREMLASRAV---------------- 416 (701)
Q Consensus 353 GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~~~~~~~~~~l~~~~v---------------- 416 (701)
++.||-.|+.++||..+.+.... +-.+.....+++|+-||.|..|++--.....+...+++.
T Consensus 248 ~rlDnr~~~~~~l~al~~~~~~~--~~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~~~~ 325 (465)
T PTZ00371 248 PRLDNLGSSFCAFKALTEAVESL--GENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDSFAK 325 (465)
T ss_pred ecchhHHHHHHHHHHHHhccccc--cCCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhHHHH
Confidence 56799999999999887543210 001445555566999999988765432222221111111
Q ss_pred -----EEEEecCccc-------------------CCccc------cccChhHHHHHHHHHHHcCCCCCCcchhhhccccC
Q 005347 417 -----AYLNIDSAVH-------------------EAGFH------ASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGS 466 (701)
Q Consensus 417 -----a~iNlD~~g~-------------------g~~~~------~~~~p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~ 466 (701)
..|.+|++-. |+.+. ..+++.+..++.+.+++..-|.. .+ ..
T Consensus 326 ~~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~~~Ip~Q---~~----~~- 397 (465)
T PTZ00371 326 LMARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKKANIPIQ---EF----VV- 397 (465)
T ss_pred HHhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHHcCCCEE---EE----Ee-
Confidence 4577887521 22221 23456777788888776544422 11 10
Q ss_pred CCCCccccCCCCCCchHhHHh-cCCceEEEeeeCCCCCcCCCCcccHHHH
Q 005347 467 SNSPVIGRLGGGGSDYAAFIQ-HIGVPVADMSFGTGYPVYHSMYDDFIWM 515 (701)
Q Consensus 467 ~~~~~~~~~~~~~SD~~~F~~-~~GIPs~~~~~~~~~~~yHT~~Dt~~~i 515 (701)
-...+ +|||-.|++. ..|||+++++- +--.-||+..+...-
T Consensus 398 -----~~d~~-~GsTig~i~~s~~Gi~tvDiGi--P~l~MHS~rE~~~~~ 439 (465)
T PTZ00371 398 -----KNDSP-CGSTIGPILSSNLGIRTVDIGI--PQLAMHSIREMCGVV 439 (465)
T ss_pred -----cCCCC-CcchHHHHHHhCCCCcEEEech--hhcccccHHHHccHH
Confidence 01222 6899999987 68999999964 222569988876543
No 113
>PRK02813 putative aminopeptidase 2; Provisional
Probab=94.16 E-value=0.38 Score=53.92 Aligned_cols=140 Identities=19% Similarity=0.175 Sum_probs=84.9
Q ss_pred CCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCc---chHH-HHHHHHHhh-------------hcc
Q 005347 352 FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLI---GSTE-WVEENREML-------------ASR 414 (701)
Q Consensus 352 ~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~---GS~~-~~~~~~~~l-------------~~~ 414 (701)
.++.||-.|+.++||..+.+. . ..++++++|+-||.|.. |+.. |+++....+ .-+
T Consensus 230 s~~lDnr~~~~~~l~al~~~~-------~-~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i~ 301 (428)
T PRK02813 230 SGRLDNLSSCHAGLEALLAAA-------S-DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRALA 301 (428)
T ss_pred EecchhHHHHHHHHHHHHhcC-------C-CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhhC
Confidence 356799999999999876532 2 67899999999999988 7663 222211110 001
Q ss_pred EEEEEEecCccc-------------------CCccc------cccChhHHHHHHHHHHHcCCCCCCcchhhhccccCCCC
Q 005347 415 AVAYLNIDSAVH-------------------EAGFH------ASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNS 469 (701)
Q Consensus 415 ~va~iNlD~~g~-------------------g~~~~------~~~~p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~ 469 (701)
--..|.+|+.-. |+.+. ..+++.+..++.+.+++..-|.. .. ..
T Consensus 302 ~s~~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~Q---~~----v~---- 370 (428)
T PRK02813 302 RSFLISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPYQ---EF----VN---- 370 (428)
T ss_pred CCeEEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCEE---EE----Ee----
Confidence 123567776521 22121 12456667777777776544422 10 00
Q ss_pred CccccCCCCCCchHhHHh-cCCceEEEeeeCCCCCcCCCCcccHHHH
Q 005347 470 PVIGRLGGGGSDYAAFIQ-HIGVPVADMSFGTGYPVYHSMYDDFIWM 515 (701)
Q Consensus 470 ~~~~~~~~~~SD~~~F~~-~~GIPs~~~~~~~~~~~yHT~~Dt~~~i 515 (701)
-...+ +|||-.|++. +.|||+++++- +--+-||+..+...-
T Consensus 371 --~~d~~-gGstig~i~~s~~Gi~tvdiGi--P~l~MHS~~E~~~~~ 412 (428)
T PRK02813 371 --RSDMP-CGSTIGPITAARLGIRTVDVGA--PMLAMHSARELAGVK 412 (428)
T ss_pred --cCCCC-CccHHHHHHHhCCCCcEEEeCh--hhcccccHHHHccHH
Confidence 01123 6899999987 57999999964 223569988876543
No 114
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=93.36 E-value=0.33 Score=55.55 Aligned_cols=96 Identities=21% Similarity=0.273 Sum_probs=71.5
Q ss_pred eeeeEEEEecCCC-CCCcEEEEEeccCCcCCCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcchH
Q 005347 323 TIQNVIGIIPGTE-EPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIGST 401 (701)
Q Consensus 323 ~~~NVia~i~G~~-~~~~~Ivl~aH~Ds~~~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~GS~ 401 (701)
...||+|.++... +..|.||+.+.++.... .-|..|++.+|.+||.+++. .-| -|.|+|++.+. +..|.+
T Consensus 2 ~G~nvy~i~rapR~d~tEaivl~~~~~~~~~--~~n~~~v~l~lal~~~~~~~--~~w--sKDii~l~~~~---~~~g~~ 72 (504)
T PF04114_consen 2 SGTNVYGILRAPRGDGTEAIVLVVPWRDSDG--EYNAGGVALALALARYFRRQ--SYW--SKDIIFLFTDD---ELAGMQ 72 (504)
T ss_pred CceEEEEEEecCCCCCceeEEEEEecCCCCc--ccchhhHHHHHHHHHHhhhc--hhh--hccEEEEecCC---cchHHH
Confidence 3579999997532 34689999998875443 44689999999999999864 235 69999998764 467889
Q ss_pred HHHHHHHHh---------h---hccEEEEEEecCcccC
Q 005347 402 EWVEENREM---------L---ASRAVAYLNIDSAVHE 427 (701)
Q Consensus 402 ~~~~~~~~~---------l---~~~~va~iNlD~~g~g 427 (701)
.|++++... + ...+.+.||+|..+..
T Consensus 73 awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~ 110 (504)
T PF04114_consen 73 AWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDS 110 (504)
T ss_pred HHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCC
Confidence 999997653 1 2257788999987654
No 115
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=91.08 E-value=0.88 Score=49.44 Aligned_cols=76 Identities=22% Similarity=0.318 Sum_probs=63.5
Q ss_pred cCCCCCCcEEEEEeccCCcC-----------------------CCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEE
Q 005347 332 PGTEEPDRLVILGNHRDAWT-----------------------FGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLC 388 (701)
Q Consensus 332 ~G~~~~~~~Ivl~aH~Ds~~-----------------------~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~ 388 (701)
.|+++..+.|++..|+|-.+ -|+.||-.-++..+++.++++++ |...+-+|+||
T Consensus 85 ~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~---g~~lpvnv~f~ 161 (473)
T KOG2276|consen 85 LGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQL---GIDLPVNVVFV 161 (473)
T ss_pred ccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHh---CccccceEEEE
Confidence 38877778999999999652 29999999999999999988764 55678999999
Q ss_pred eeCcccCCCcchHHHHHHHHHh
Q 005347 389 NWDAEEYGLIGSTEWVEENREM 410 (701)
Q Consensus 389 ~~~~EE~Gl~GS~~~~~~~~~~ 410 (701)
+=+-||.|..|=.+-++...+.
T Consensus 162 ~EgmEEsgS~~L~~l~~~~kD~ 183 (473)
T KOG2276|consen 162 FEGMEESGSEGLDELIEKEKDK 183 (473)
T ss_pred EEechhccCccHHHHHHHHhhh
Confidence 9999999999988877766544
No 116
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=88.33 E-value=0.55 Score=44.19 Aligned_cols=53 Identities=23% Similarity=0.184 Sum_probs=41.1
Q ss_pred eEEEecCCChhchHHHHhcCCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeC
Q 005347 146 PVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTD 202 (701)
Q Consensus 146 ~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~d 202 (701)
+||-+. -++-.++|. +++++.|.|+|+..|+|.+-.|..+++++||.++|+ +|
T Consensus 67 ~lV~ad--Pp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiii-td 119 (193)
T KOG3920|consen 67 ELVLAD--PPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIII-TD 119 (193)
T ss_pred ceeecC--ChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEE-ec
Confidence 566542 123355554 388999999999999999989999999999988875 44
No 117
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.61 E-value=0.83 Score=49.16 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=35.6
Q ss_pred CCcccceEEEEEeCCCchhhHHHHHHHcCCeEEEEEeCCC
Q 005347 165 VVNVTGTVVLARYGQIFRGDIVHNAFEAGAAGALIFTDRK 204 (701)
Q Consensus 165 gv~v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvi~~~dp~ 204 (701)
+-.-...+||++.|++.+.+|+.+|+++|..|+|+|+++.
T Consensus 75 ~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~ 114 (348)
T KOG4628|consen 75 STRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVG 114 (348)
T ss_pred CCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCC
Confidence 4467789999999999999999999999999999998654
No 118
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=85.15 E-value=3.8 Score=45.39 Aligned_cols=78 Identities=28% Similarity=0.340 Sum_probs=60.1
Q ss_pred eeEEEEecCCCCCCcEEEEEeccCCcCC-------------C---CCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEE
Q 005347 325 QNVIGIIPGTEEPDRLVILGNHRDAWTF-------------G---AVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLC 388 (701)
Q Consensus 325 ~NVia~i~G~~~~~~~Ivl~aH~Ds~~~-------------G---A~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~ 388 (701)
.=|+|+++|.. +.+.|-+-|-+|..+. | |+==-.-++++|-.|+.|++.++ ..+-+|+|+
T Consensus 57 TGvva~~~~g~-~g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD~Hta~lLgaA~~L~~~~~---~~~Gtv~~i 132 (392)
T COG1473 57 TGVVATLKGGK-PGPTIALRADMDALPIQEETGLPFASKNPGVMHACGHDGHTAILLGAALALAEHKD---NLPGTVRLI 132 (392)
T ss_pred eEEEEEEcCCC-CCCEEEEEeecccCccccccCCCcccCCCCCcccCCchHHHHHHHHHHHHHHhhhh---hCCcEEEEE
Confidence 45889998765 3569999999999861 2 11111458999999999998753 568899999
Q ss_pred eeCcccCCCcchHHHHHHH
Q 005347 389 NWDAEEYGLIGSTEWVEEN 407 (701)
Q Consensus 389 ~~~~EE~Gl~GS~~~~~~~ 407 (701)
+-.|||.+- |+...+++-
T Consensus 133 fQPAEE~~~-Ga~~mi~~G 150 (392)
T COG1473 133 FQPAEEGGG-GAKAMIEDG 150 (392)
T ss_pred ecccccccc-cHHHHHhcC
Confidence 999999776 998888764
No 119
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=83.51 E-value=4.3 Score=42.26 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=40.8
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeeeeE
Q 005347 38 LSDNVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIASYG 87 (701)
Q Consensus 38 ~i~~~~i~~~l~~ls~~~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~~y~ 87 (701)
..+..+++++|.-+- .+|..||+|..+.-+||.+.|++.|..++.+.|.
T Consensus 47 ~s~~~~~~~~L~p~l-v~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~ 95 (338)
T KOG3946|consen 47 DSDWNRLWENLLPIL-VPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFT 95 (338)
T ss_pred CCCHHHHHHhhhhhh-ccccCCCCccHHHHHHHHHHHHhcCceeeecccc
Confidence 567777877755443 5899999999999999999999999998877665
No 120
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=78.05 E-value=8.8 Score=42.79 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=36.3
Q ss_pred ChhHHHHHHHHhhcCCCCCCC-HhhHHHHHHHHHHHHHCCCceeeee
Q 005347 40 DNVSISHHLHTLTRRPHVAGS-EANAEAAAYVLSVFTSCSLESHIAS 85 (701)
Q Consensus 40 ~~~~i~~~l~~ls~~~r~aGs-~g~~~~a~yi~~~~~~~Gl~~~~~~ 85 (701)
..+++.+.|+.|.+.+-.++. ++..++++||++.|+++|++++..+
T Consensus 35 ~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~ 81 (410)
T PRK06133 35 EQPAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAP 81 (410)
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 445788888888888776665 3456899999999999999976543
No 121
>PRK07338 hypothetical protein; Provisional
Probab=77.52 E-value=1.2e+02 Score=33.45 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=31.9
Q ss_pred hhHHHHHHHHhhcCCCCCCC-HhhHHHHHHHHHHHHHCCCceeee
Q 005347 41 NVSISHHLHTLTRRPHVAGS-EANAEAAAYVLSVFTSCSLESHIA 84 (701)
Q Consensus 41 ~~~i~~~l~~ls~~~r~aGs-~g~~~~a~yi~~~~~~~Gl~~~~~ 84 (701)
.+++.+.|..|.+.+=.++. +|..+.++|++++|++.|++++..
T Consensus 16 ~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~ 60 (402)
T PRK07338 16 QAPMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELI 60 (402)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 35566677777776644443 445789999999999999987653
No 122
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=76.05 E-value=8.6 Score=43.88 Aligned_cols=79 Identities=19% Similarity=0.310 Sum_probs=58.6
Q ss_pred eeeeeeEEEEecCCC-CCCcEEEEEeccCCcCCCCCCCchHHHHHHHHHHHHHHhHHcCCCCCCcEEEEeeCcccCCCcc
Q 005347 321 MATIQNVIGIIPGTE-EPDRLVILGNHRDAWTFGAVDPNSGTAALLEVAQRLNKLQKRGWKPRRTIVLCNWDAEEYGLIG 399 (701)
Q Consensus 321 ~~~~~NVia~i~G~~-~~~~~Ivl~aH~Ds~~~GA~DnasG~A~lLElAr~l~~~~~~g~~p~rtI~F~~~~~EE~Gl~G 399 (701)
+....||+|.+++.. +..|-+|+...++.-..+ |..|++.++.+|+.++.- .-| -+.|+|++.+++ ..|
T Consensus 117 ~y~G~NvyGilRAPRgdgtEsivl~vP~~~~~~~---~~~~v~l~lsla~~f~r~--~yW--sKDII~v~~d~~---~~g 186 (617)
T KOG3566|consen 117 EYSGENVYGILRAPRGDGTESIVLVVPYGRSSGS---NSASVALLLSLADYFSRW--VYW--SKDIIFVFTDGP---ALG 186 (617)
T ss_pred hcCCceEEEEEecCCCCCcceEEEEEecccCCCc---chhHHHHHHHHHHHhcCC--eee--cccEEEEEeCCc---ccc
Confidence 334789999998643 345789999888754333 368899999999987642 113 689999999974 566
Q ss_pred hHHHHHHHHH
Q 005347 400 STEWVEENRE 409 (701)
Q Consensus 400 S~~~~~~~~~ 409 (701)
-..|++.+.+
T Consensus 187 ~~AwLeaYhd 196 (617)
T KOG3566|consen 187 LDAWLEAYHD 196 (617)
T ss_pred HHHHHHHhhc
Confidence 7899999876
No 123
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=73.97 E-value=5.3 Score=44.42 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=39.3
Q ss_pred CChhHHHHHHHHhhcCC--------CCCCCHhhHHHHHHHHHHHHHCCCceeee
Q 005347 39 SDNVSISHHLHTLTRRP--------HVAGSEANAEAAAYVLSVFTSCSLESHIA 84 (701)
Q Consensus 39 i~~~~i~~~l~~ls~~~--------r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~ 84 (701)
++.+++.++|+.|.+.+ |.++|.++.++++||++.|+++|++++.+
T Consensus 7 ~~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~ 60 (412)
T PRK12893 7 INGERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD 60 (412)
T ss_pred cCHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 56788899999998854 66788899999999999999999987653
No 124
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=69.69 E-value=8.5 Score=42.87 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=39.4
Q ss_pred CChhHHHHHHHHhhcCC-------CCCCCHhhHHHHHHHHHHHHHCCCceeee
Q 005347 39 SDNVSISHHLHTLTRRP-------HVAGSEANAEAAAYVLSVFTSCSLESHIA 84 (701)
Q Consensus 39 i~~~~i~~~l~~ls~~~-------r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~ 84 (701)
++.+++.+++..|+..+ |.+.|+++.++++||.+.|+++|++++..
T Consensus 6 ~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~ 58 (414)
T PRK12890 6 INGERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRRD 58 (414)
T ss_pred cCHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEc
Confidence 45678999999999765 45789999999999999999999988654
No 125
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=68.91 E-value=8.3 Score=42.97 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=40.7
Q ss_pred CCChhHHHHHHHHhhcC-C-------CCCCCHhhHHHHHHHHHHHHHCCCceeee
Q 005347 38 LSDNVSISHHLHTLTRR-P-------HVAGSEANAEAAAYVLSVFTSCSLESHIA 84 (701)
Q Consensus 38 ~i~~~~i~~~l~~ls~~-~-------r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~ 84 (701)
.++.+++.++++.|.+. + |.+.|.++.++++||++.|+++|++++.+
T Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~ 57 (413)
T PRK09290 3 RIDAERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVD 57 (413)
T ss_pred CcCHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 36788999999999986 3 67889999999999999999999997654
No 126
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=67.94 E-value=8.6 Score=42.90 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=39.3
Q ss_pred CChhHHHHHHHHhhcC---C-----CCCCCHhhHHHHHHHHHHHHHCCCceeee
Q 005347 39 SDNVSISHHLHTLTRR---P-----HVAGSEANAEAAAYVLSVFTSCSLESHIA 84 (701)
Q Consensus 39 i~~~~i~~~l~~ls~~---~-----r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~ 84 (701)
++..++.+.++.|++. | |.+.|+++.++++||.+.|++.|++++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~~ 60 (414)
T PRK12891 7 VDGERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRVD 60 (414)
T ss_pred cCHHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEC
Confidence 3456899888888873 2 89999999999999999999999998664
No 127
>PRK07906 hypothetical protein; Provisional
Probab=63.93 E-value=64 Score=35.98 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.5
Q ss_pred CHhhHHHHHHHHHHHHHCCCceeee
Q 005347 60 SEANAEAAAYVLSVFTSCSLESHIA 84 (701)
Q Consensus 60 s~g~~~~a~yi~~~~~~~Gl~~~~~ 84 (701)
++++.++++||.++|++.|++++..
T Consensus 21 ~~~e~~~~~~l~~~l~~~G~~~~~~ 45 (426)
T PRK07906 21 GKGEREAAEYVAEKLAEVGLEPTYL 45 (426)
T ss_pred CchHHHHHHHHHHHHHhCCCCeEEe
Confidence 3678899999999999999997654
No 128
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=62.48 E-value=10 Score=42.23 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=37.4
Q ss_pred hHHHHHHHHhhcC--------CCCCCCHhhHHHHHHHHHHHHHCCCceeeeee
Q 005347 42 VSISHHLHTLTRR--------PHVAGSEANAEAAAYVLSVFTSCSLESHIASY 86 (701)
Q Consensus 42 ~~i~~~l~~ls~~--------~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~~y 86 (701)
.++.+.|+.|+.. .|++-|+.+.++.+|+.++++++||+++.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~D~~ 55 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRFDDV 55 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEEcCC
Confidence 3567777777763 38999999999999999999999999877654
No 129
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=55.93 E-value=16 Score=40.44 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcC--------CCCCCCHhhHHHHHHHHHHHHHCCCceeeee
Q 005347 43 SISHHLHTLTRR--------PHVAGSEANAEAAAYVLSVFTSCSLESHIAS 85 (701)
Q Consensus 43 ~i~~~l~~ls~~--------~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~~ 85 (701)
++++.|+.+++. .|++-|+++.++++|++++|+++|++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G~~~~~~~ 52 (401)
T TIGR01879 2 RLWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAGLEVRFDE 52 (401)
T ss_pred hHHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 456666666652 2888899999999999999999999987654
No 130
>PRK07473 carboxypeptidase; Provisional
Probab=55.92 E-value=3.1e+02 Score=30.04 Aligned_cols=46 Identities=7% Similarity=-0.107 Sum_probs=34.9
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHh-hHHHHHHHHHHHHHCCCceeee
Q 005347 39 SDNVSISHHLHTLTRRPHVAGSEA-NAEAAAYVLSVFTSCSLESHIA 84 (701)
Q Consensus 39 i~~~~i~~~l~~ls~~~r~aGs~g-~~~~a~yi~~~~~~~Gl~~~~~ 84 (701)
++.+++.+.|+.|.+.+=.+|.+. ..+.++|+.+.|++.|++++..
T Consensus 8 ~~~~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~ 54 (376)
T PRK07473 8 FDSEAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERI 54 (376)
T ss_pred cCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 456778888888888765666533 3567889999999999987653
No 131
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=55.13 E-value=16 Score=42.86 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=41.3
Q ss_pred hHHHHHHHHhhcC-----------CCCCCCHhhHHHHHHHHHHHHHCCCc-eeeeee-EEEEeec
Q 005347 42 VSISHHLHTLTRR-----------PHVAGSEANAEAAAYVLSVFTSCSLE-SHIASY-GVSLTYP 93 (701)
Q Consensus 42 ~~i~~~l~~ls~~-----------~r~aGs~g~~~~a~yi~~~~~~~Gl~-~~~~~y-~v~~~~p 93 (701)
+++.+.|+.|+.. .|++-|+.+.++++|+.+.|+++||+ ++.+.. .++-.+|
T Consensus 181 ~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~~gNv~~~~~ 245 (591)
T PRK13799 181 ADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDAVGNVVGRYK 245 (591)
T ss_pred HHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECCCCCEEEEcC
Confidence 6777888888764 28888999999999999999999998 988764 3444444
No 132
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=53.44 E-value=26 Score=40.16 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=39.6
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeee
Q 005347 38 LSDNVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIAS 85 (701)
Q Consensus 38 ~i~~~~i~~~l~~ls~~~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~~ 85 (701)
.+..+.+.+.++.|.+.|+.+|.+ .+.++|+.+.+++.|++++.++
T Consensus 6 ~~~~~~~~~~l~~Lv~ips~S~~e--~~~~~~l~~~~~~~G~~~~~d~ 51 (485)
T PRK15026 6 QLSPQPLWDIFAKICSIPHPSYHE--EQLAEYIVGWAKEKGFHVERDQ 51 (485)
T ss_pred hcCHHHHHHHHHHHhCCCCCCCCH--HHHHHHHHHHHHhCCCEEEEEe
Confidence 467788999999999999888764 4999999999999999987654
No 133
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=53.13 E-value=15 Score=39.94 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=24.1
Q ss_pred eeeeeEEEEecCCCCCCcEEEEEeccCCcCC
Q 005347 322 ATIQNVIGIIPGTEEPDRLVILGNHRDAWTF 352 (701)
Q Consensus 322 ~~~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~ 352 (701)
....|++|.++|... .+.|++.||+|..++
T Consensus 43 D~~Gnlia~~~g~~~-~~~v~l~aHmDevG~ 72 (343)
T TIGR03106 43 TRRGAIRATLPGREA-TPARAVVTHLDTLGA 72 (343)
T ss_pred CCCeEEEEEECCCCC-CCeEEEEEeeccccc
Confidence 467899999988532 357999999999875
No 134
>PLN02693 IAA-amino acid hydrolase
Probab=49.74 E-value=45 Score=37.64 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=37.5
Q ss_pred hhHHHHhhccCCCCh----hHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCcee
Q 005347 27 SFYHSLYTSTSLSDN----VSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESH 82 (701)
Q Consensus 27 ~~~~~~~~~~~~i~~----~~i~~~l~~ls~~~r~aGs~g~~~~a~yi~~~~~~~Gl~~~ 82 (701)
++.+..+++ ..+. +.+.+..++|-+.|=+++. +.++++||.+.|+++|++++
T Consensus 30 ~~~~~~~~~--~~~~~~~~~~~~~~r~~lh~~PE~s~~--E~~ta~~i~~~L~~~G~~~~ 85 (437)
T PLN02693 30 SQIQINLLE--LAKSPEVFDWMVRIRRKIHENPELGYE--EFETSKLIRSELDLIGIKYR 85 (437)
T ss_pred hhhHHHHHH--HhhhhhhHHHHHHHHHHHHhCCCCCCc--hHHHHHHHHHHHHHCCCeeE
Confidence 445555554 3333 3466667777777878886 67899999999999999864
No 135
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=49.66 E-value=1.5e+02 Score=33.75 Aligned_cols=42 Identities=14% Similarity=0.051 Sum_probs=30.1
Q ss_pred hHHHHHHHHhhcCCCCC----------CCHhhHHHHHHHHHHHHHCCCceee
Q 005347 42 VSISHHLHTLTRRPHVA----------GSEANAEAAAYVLSVFTSCSLESHI 83 (701)
Q Consensus 42 ~~i~~~l~~ls~~~r~a----------Gs~g~~~~a~yi~~~~~~~Gl~~~~ 83 (701)
+.+.+.|+.|-+.|=.+ ..++..++++|+.+.|+++|++++.
T Consensus 13 ~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~ 64 (466)
T TIGR01886 13 DALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKN 64 (466)
T ss_pred HHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEE
Confidence 45666677777654222 1356788999999999999999864
No 136
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=46.81 E-value=35 Score=37.84 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=37.3
Q ss_pred CChhHHHHHHHHhhcCC-------CCCCCHhhHHHHHHHHHHHHHCCCceeee
Q 005347 39 SDNVSISHHLHTLTRRP-------HVAGSEANAEAAAYVLSVFTSCSLESHIA 84 (701)
Q Consensus 39 i~~~~i~~~l~~ls~~~-------r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~ 84 (701)
++.+++.+.++.|++.+ |.+-|+++.++++|+.+.|+++|++++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~ 59 (412)
T PRK12892 7 IDGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID 59 (412)
T ss_pred ccHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc
Confidence 45567888888888753 46678889999999999999999988654
No 137
>PRK09133 hypothetical protein; Provisional
Probab=43.65 E-value=51 Score=37.40 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=35.7
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCcee
Q 005347 38 LSDNVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESH 82 (701)
Q Consensus 38 ~i~~~~i~~~l~~ls~~~r~aGs~g~~~~a~yi~~~~~~~Gl~~~ 82 (701)
..+.+.+.+.|+.|.+.+-..+..+..++++||.+.|++.|++++
T Consensus 33 ~~~~~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~ 77 (472)
T PRK09133 33 TADQQAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADA 77 (472)
T ss_pred chhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCce
Confidence 355677788888888887665445678999999999999999863
No 138
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=43.33 E-value=36 Score=40.04 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=37.9
Q ss_pred ChhHHHHHHHHhhcCC-----------CCCCCHhhHHHHHHHHHHHHHCCC-ceeeeee
Q 005347 40 DNVSISHHLHTLTRRP-----------HVAGSEANAEAAAYVLSVFTSCSL-ESHIASY 86 (701)
Q Consensus 40 ~~~~i~~~l~~ls~~~-----------r~aGs~g~~~~a~yi~~~~~~~Gl-~~~~~~y 86 (701)
-.+++.+.|..|+..+ |++-|+++.++++|+.+.|+++|+ +++.+..
T Consensus 179 ~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~D~~ 237 (591)
T PRK13590 179 LGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHIDAV 237 (591)
T ss_pred HHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeECCC
Confidence 3477888888888632 566799999999999999999999 7766653
No 139
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=42.81 E-value=48 Score=39.98 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=39.2
Q ss_pred HHHhhccCCCChhHHHHHHHHhhcC-CCCCCCHhhH-HHHHHHHHHHHHCC
Q 005347 30 HSLYTSTSLSDNVSISHHLHTLTRR-PHVAGSEANA-EAAAYVLSVFTSCS 78 (701)
Q Consensus 30 ~~~~~~~~~i~~~~i~~~l~~ls~~-~r~aGs~g~~-~~a~yi~~~~~~~G 78 (701)
++...+ ..+++|...++.++++. ||..||..++ .+.+|+.++..+..
T Consensus 47 e~~~~~--~f~~~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~ 95 (834)
T KOG2194|consen 47 EQTLPS--QFSEARALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIR 95 (834)
T ss_pred hhcCch--hhHHHHHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHH
Confidence 444445 78899999999999996 8999999988 88999999988643
No 140
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=42.71 E-value=36 Score=38.73 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=36.4
Q ss_pred hhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeee
Q 005347 41 NVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIAS 85 (701)
Q Consensus 41 ~~~i~~~l~~ls~~~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~~ 85 (701)
.+++.+.|+.|.+.++.+ ..+.++++|+++.|+++|++++.++
T Consensus 3 ~~~~~~~l~~l~~i~s~s--~~e~~~~~~l~~~l~~~G~~~~~~~ 45 (477)
T TIGR01893 3 PSRVFKYFEEISKIPRPS--KNEKEVSNFIVNWAKKLGLEVKQDE 45 (477)
T ss_pred HHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHHHHHcCCeEEEeC
Confidence 577889999999998764 4578899999999999999987654
No 141
>cd01356 AcnX_swivel Putative Aconitase X swivel domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=42.41 E-value=68 Score=29.57 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=26.3
Q ss_pred CCcccceEEEEEeCC--CchhhHHHHHHHcCCe-EEEEEeC
Q 005347 165 VVNVTGTVVLARYGQ--IFRGDIVHNAFEAGAA-GALIFTD 202 (701)
Q Consensus 165 gv~v~GkIvlv~~g~--~~~~~k~~~A~~~GA~-gvi~~~d 202 (701)
|.+++|||.++.+++ +.-+.....+..+|-+ +.|++..
T Consensus 39 G~si~gkILv~p~~kGSt~gs~vl~~l~~~g~aP~AiI~~~ 79 (123)
T cd01356 39 GESIAGKVLVLPGGKGSTVGSYVLYELARNGTAPAAIVFEE 79 (123)
T ss_pred CCcccceEEEecCCCCcchHHHHHHHHHHcCCCCeeEeecC
Confidence 889999999999775 3333455666777753 5566654
No 142
>TIGR01935 NOT-MenG RraA famliy. This model was initially classified as a "hypothetical equivalog" expressing the tentative hypothesis that all members might have the same function as the E. coli enzyme. Considering the second clade of enterobacterial sequences within this family, that appears to be less tenable. The function of these sequences outside of the narrow RraA equivalog model (TIGR02998) remains obscure. All of these were initially annotated as MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error in the case of the E. coli protein.
Probab=39.70 E-value=1.1e+02 Score=29.22 Aligned_cols=67 Identities=22% Similarity=0.365 Sum_probs=43.9
Q ss_pred ccccccCCCcceEeeEEEecCCChhchHHHH-hcCCcccceEEEEEeCC-----CchhhHHHHHHHcCCeEEEEE
Q 005347 132 PTFHGYAKSGTVIGPVVYVNYGRVEDYVTLK-EMVVNVTGTVVLARYGQ-----IFRGDIVHNAFEAGAAGALIF 200 (701)
Q Consensus 132 ~~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~-~~gv~v~GkIvlv~~g~-----~~~~~k~~~A~~~GA~gvi~~ 200 (701)
+.|..|++...+-|+.+=|-.. +|-..+. .....-.|+|+++..++ ++-+.....|+.+|++|+|+-
T Consensus 17 ~~~~~~g~~~~i~G~A~TV~~~--~d~~~~~~ai~~~~~GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~Vid 89 (150)
T TIGR01935 17 PMFRNFGGRAAFAGPIVTVKCF--EDNSLVREVLEQPGAGRVLVVDGGGSLRCALLGDNLAVLAEENGWEGVIVN 89 (150)
T ss_pred hhhhhcCCCCEEEEEEEEEEEE--CCcHHHHHHHhcCCCCeEEEEECCCCCceEeehHHHHHHHHHCCCEEEEEe
Confidence 4466788888888887666543 2211111 12334789999998654 233456788999999998875
No 143
>PRK06915 acetylornithine deacetylase; Validated
Probab=39.53 E-value=43 Score=37.27 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=38.0
Q ss_pred hHHHHhhccCCCC--hhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeee
Q 005347 28 FYHSLYTSTSLSD--NVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIA 84 (701)
Q Consensus 28 ~~~~~~~~~~~i~--~~~i~~~l~~ls~~~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~ 84 (701)
+++.++.+ .++ .+++.+.++.|-+.|=.+| .+.++++||++.|+++|++++..
T Consensus 3 ~~~~~~~~--~~~~~~~~~~~~l~~lv~ips~s~--~e~~~~~~l~~~l~~~G~~~~~~ 57 (422)
T PRK06915 3 QLKKQICD--YIESHEEEAVKLLKRLIQEKSVSG--DESGAQAIVIEKLRELGLDLDIW 57 (422)
T ss_pred HHHHHHHH--HHHhhHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHHHHhcCCeeEEe
Confidence 34455555 344 3567778888887776655 46899999999999999987543
No 144
>PRK08652 acetylornithine deacetylase; Provisional
Probab=37.60 E-value=56 Score=35.04 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=33.8
Q ss_pred hHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeee
Q 005347 42 VSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIAS 85 (701)
Q Consensus 42 ~~i~~~l~~ls~~~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~~ 85 (701)
+++.+.++.|-+.|=.+|. +.++++||.+.|+++|++++..+
T Consensus 2 ~~~~~~~~~lv~ips~s~~--e~~~~~~l~~~l~~~G~~v~~~~ 43 (347)
T PRK08652 2 ERAKELLKQLVKIPSPSGQ--EDEIALHIMEFLESLGYDVHIES 43 (347)
T ss_pred hhHHHHHHHHhcCCCCCCc--hHHHHHHHHHHHHHcCCEEEEEe
Confidence 5677888888887766664 67899999999999999876543
No 145
>TIGR02998 RraA_entero regulator of ribonuclease activity A. THIS PROTEIN IS _NOT_ MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error .
Probab=34.00 E-value=1.6e+02 Score=28.46 Aligned_cols=68 Identities=21% Similarity=0.313 Sum_probs=44.9
Q ss_pred ccccccCCCcceEeeEEEecCCChhchHHHH-hcCCcccceEEEEEeCC-----CchhhHHHHHHHcCCeEEEEEe
Q 005347 132 PTFHGYAKSGTVIGPVVYVNYGRVEDYVTLK-EMVVNVTGTVVLARYGQ-----IFRGDIVHNAFEAGAAGALIFT 201 (701)
Q Consensus 132 ~~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~-~~gv~v~GkIvlv~~g~-----~~~~~k~~~A~~~GA~gvi~~~ 201 (701)
+.|..|++.-.+-|+.+=|.... |-..+. ....--.|+|+++..++ ++-+.-...|..+|++|+|+.-
T Consensus 21 ~~~~~~g~~~~~~G~A~TV~~~~--d~~~~~~aid~~~pGdVlVid~~g~~~~A~~G~~la~~a~~~G~aGvVidG 94 (161)
T TIGR02998 21 PIFSNFGGRSSFGGKVVTVKCFE--HNGLINELLEQNGTGRVLVIDGGGSTRRALIDAELAQLAANNGWEGIVVYG 94 (161)
T ss_pred ccccccCCCCEEEEEEEEEEeeC--CcHHHHHHHhccCCCeEEEEECCCCCceEeeCHHHHHHHHHCCCeEEEEee
Confidence 44677888777888887775443 211111 12334679999998654 2234566789999999999864
No 146
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=33.81 E-value=7.2e+02 Score=27.82 Aligned_cols=154 Identities=18% Similarity=0.137 Sum_probs=87.2
Q ss_pred hhccCCCCchhHHHHhhccCCCChhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceee-----eeeEEEEee
Q 005347 18 FLLSSPQPKSFYHSLYTSTSLSDNVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHI-----ASYGVSLTY 92 (701)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~ls~~~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~-----~~y~v~~~~ 92 (701)
+++.+.+..+..++ . .+...++++.||.-+-.|..-.+. ..++++.++-+.+|+.++. ..|.+++.+
T Consensus 10 ~~l~~~~~~a~~~e---~--~~~v~~f~eylRi~Tv~p~~dy~~---a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~ 81 (420)
T KOG2275|consen 10 YVLRSGSVSAGPHE---E--NISVTRFREYLRIPTVQPNPDYTI---ACADFLKKYAKSLGLTVQKIESEPGKYVLLYTW 81 (420)
T ss_pred HHhhcCCCCCCccc---c--chHHHHHHHHhhccccccCCCccH---HHHHHHHHHHHhcCCceeEEEecCceeEEEEEe
Confidence 44444444443332 3 577889999999999888777765 7888999999999997532 245566666
Q ss_pred cccc-ceEEecCCCCCceEeeecccccCCCCCCCCCCccccccc------ccCCCcceEeeEEEecCCChhc--------
Q 005347 93 PVSR-SLSLTRPPPQPPITFALRQEIYEGDPYADVADEVLPTFH------GYAKSGTVIGPVVYVNYGRVED-------- 157 (701)
Q Consensus 93 p~~~-~l~l~~~~g~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~------a~S~~G~v~g~lVyv~~G~~~D-------- 157 (701)
+++. .+. .+-+.-. .|++|+|. +||+--+-+| -||+ .|+.++
T Consensus 82 ~GS~P~L~--------silL~SH-------------~DVVP~f~e~W~h~Pfsa~~~~~g-~Iya-RGaqD~K~~~va~l 138 (420)
T KOG2275|consen 82 LGSDPELP--------SILLNSH-------------TDVVPVFREKWTHPPFSAFKDEDG-NIYA-RGAQDMKCVGVAYL 138 (420)
T ss_pred eCCCCCcc--------ceeeecc-------------ccccCCCcccCccCCccccccCCC-cEEe-ccccchHhHHHHHH
Confidence 6542 110 0111111 12223222 2333222223 2554 355433
Q ss_pred --hHHHHhcCCcccceEEEEEeCC--C--chhhHHHHH-HHcCCeEEEEEeC
Q 005347 158 --YVTLKEMVVNVTGTVVLARYGQ--I--FRGDIVHNA-FEAGAAGALIFTD 202 (701)
Q Consensus 158 --~~~L~~~gv~v~GkIvlv~~g~--~--~~~~k~~~A-~~~GA~gvi~~~d 202 (701)
...|+..|...+..|.|.-.-+ + +.|.|-.+. ++.++.++-++-|
T Consensus 139 eAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~~~~~~~l~~~filD 190 (420)
T KOG2275|consen 139 EAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAKTEEFKKLNLGFILD 190 (420)
T ss_pred HHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhhhhhhcccceeEEec
Confidence 4455567888999998875322 1 234443333 5778877766655
No 147
>PRK08596 acetylornithine deacetylase; Validated
Probab=32.21 E-value=79 Score=35.27 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=34.0
Q ss_pred hHHHHHHHHhhcCCCCCCCH-hhHHHHHHHHHHHHHCCCceeeee
Q 005347 42 VSISHHLHTLTRRPHVAGSE-ANAEAAAYVLSVFTSCSLESHIAS 85 (701)
Q Consensus 42 ~~i~~~l~~ls~~~r~aGs~-g~~~~a~yi~~~~~~~Gl~~~~~~ 85 (701)
+++.+.|+.|.+.|=.++.. +..++++||++.|+++|++++..+
T Consensus 13 ~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~ 57 (421)
T PRK08596 13 DELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWD 57 (421)
T ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56778888888877555433 567889999999999999876543
No 148
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=32.06 E-value=84 Score=34.65 Aligned_cols=46 Identities=9% Similarity=0.047 Sum_probs=35.1
Q ss_pred CCChhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceee
Q 005347 38 LSDNVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHI 83 (701)
Q Consensus 38 ~i~~~~i~~~l~~ls~~~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~ 83 (701)
....+++.+.|+.|-+.|=..+..+..++++||++.|+++|++++.
T Consensus 5 ~~~~~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~ 50 (400)
T TIGR01880 5 KWEEDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKT 50 (400)
T ss_pred ccchHHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeE
Confidence 3455677778888887765555444678999999999999998754
No 149
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=31.58 E-value=81 Score=34.12 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=35.8
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeee
Q 005347 39 SDNVSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIAS 85 (701)
Q Consensus 39 i~~~~i~~~l~~ls~~~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~~ 85 (701)
+..+++.+.|+.|.+.|-.+|. +.++++|+.+.|++.|++++.++
T Consensus 3 ~~~~~~~~~l~~Lv~i~s~s~~--e~~~~~~l~~~l~~~G~~~~~~~ 47 (348)
T PRK04443 3 ISALEARELLKGLVEIPSPSGE--EAAAAEFLVEFMESHGREAWVDE 47 (348)
T ss_pred cchHHHHHHHHHHHcCCCCCCC--hHHHHHHHHHHHHHcCCEEEEcC
Confidence 3456788889999888766654 67999999999999999876543
No 150
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=29.06 E-value=2e+02 Score=27.78 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=40.1
Q ss_pred ccccCCCcceEeeEEEecCCChhchHHHHhcCCcccceEEEEEeCC-----CchhhHHHHHHHcCCeEEEEE
Q 005347 134 FHGYAKSGTVIGPVVYVNYGRVEDYVTLKEMVVNVTGTVVLARYGQ-----IFRGDIVHNAFEAGAAGALIF 200 (701)
Q Consensus 134 ~~a~S~~G~v~g~lVyv~~G~~~D~~~L~~~gv~v~GkIvlv~~g~-----~~~~~k~~~A~~~GA~gvi~~ 200 (701)
+.++++...+-|+.+=|-+. .++..........-.|+|+++..++ ++-+.....|+.+|++|+|+-
T Consensus 23 i~~~~~~~~~~G~A~TV~~~-~d~~~~~~~i~~~~~GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~Vid 93 (159)
T PRK09372 23 FSSFGGRSSFGGPITTVKCF-EDNGLVKELLEEPGEGRVLVVDGGGSLRRALVGDNLAELAVDNGWEGIVVY 93 (159)
T ss_pred ccccCCCCEEEEEEEEEEEe-CCcHHHHHHHhcCCCCeEEEEECCCCcCcEeehHHHHHHHHHcCCeEEEec
Confidence 34455566777776655443 1111111112345789999998654 233456788999999998875
No 151
>PRK05111 acetylornithine deacetylase; Provisional
Probab=28.81 E-value=92 Score=34.03 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=35.0
Q ss_pred hhHHHHHHHHhhcCCCCCCCH-----hhHHHHHHHHHHHHHCCCceeeee
Q 005347 41 NVSISHHLHTLTRRPHVAGSE-----ANAEAAAYVLSVFTSCSLESHIAS 85 (701)
Q Consensus 41 ~~~i~~~l~~ls~~~r~aGs~-----g~~~~a~yi~~~~~~~Gl~~~~~~ 85 (701)
.+.+.+.++.|-+.|-.+|.+ ++.++++||.+.|+++|++++..+
T Consensus 4 ~~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 53 (383)
T PRK05111 4 LPSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQP 53 (383)
T ss_pred chHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEe
Confidence 356888888888887666643 246899999999999999876543
No 152
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=27.39 E-value=3.8e+02 Score=30.09 Aligned_cols=89 Identities=24% Similarity=0.259 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhccEEEEEEecCcccCCccccccChhHHHHHHHHHHHcCCCCCCcchhhhccccCCCCCccccCCCCCCc
Q 005347 402 EWVEENREMLASRAVAYLNIDSAVHEAGFHASATPQLDELLKQAAKQVQDPDNSSQTIYDSWTGSSNSPVIGRLGGGGSD 481 (701)
Q Consensus 402 ~~~~~~~~~l~~~~va~iNlD~~g~g~~~~~~~~p~l~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~SD 481 (701)
+++++....+.++ +.+.++.-+..+.......+.+.++.+++.+++.. .|.+...+ +|+|
T Consensus 304 ~~~~~~~~~~g~~--~~~~~~~~~~Yp~~~~~~~~~iv~~a~~a~~~l~~-----------------~p~v~~i~-gGtd 363 (414)
T COG2195 304 DVVEEMAASLGKL--AGAELEVKDSYPGWKIKPDSPLVDLAKKAYKELGI-----------------KPKVKPIH-GGTD 363 (414)
T ss_pred HHHHHHHHHhhhc--cceEEEEeccccCcCCCCCchHHHHHHHHHHHhCC-----------------CceEEEee-cccc
Confidence 4555555544323 33445554444555666677788888888876532 24455666 8899
Q ss_pred hHhHHhcCCceEEEeeeCCCCCcCCCCcccH
Q 005347 482 YAAFIQHIGVPVADMSFGTGYPVYHSMYDDF 512 (701)
Q Consensus 482 ~~~F~~~~GIPs~~~~~~~~~~~yHT~~Dt~ 512 (701)
-..+.. .|+|..+++.+. ....||+..-+
T Consensus 364 ~~~is~-~g~p~~~i~~Gp-~~n~Hs~~E~v 392 (414)
T COG2195 364 GGVLSF-KGLPTPNISTGP-GENPHSPDEFV 392 (414)
T ss_pred hhhhhc-cCCCCceEeccc-ccCCCCcccee
Confidence 875554 699999998764 56778887643
No 153
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=26.91 E-value=86 Score=33.93 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeee
Q 005347 43 SISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIAS 85 (701)
Q Consensus 43 ~i~~~l~~ls~~~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~~ 85 (701)
++.+.++.|.+.|=.+|. +.++++||++.|+++|++++..+
T Consensus 1 ~~~~~~~~l~~i~s~s~~--e~~~~~~l~~~l~~~g~~~~~~~ 41 (361)
T TIGR01883 1 RLKKYFLELIQIDSESGK--EKAILTYLKKQITKLGIPVSLDE 41 (361)
T ss_pred ChHHHHHHHeecCCCCCc--HHHHHHHHHHHHHHcCCEEEEec
Confidence 467778888877655554 67999999999999999875543
No 154
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=26.85 E-value=1.1e+02 Score=33.59 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=32.0
Q ss_pred hHHHHHHHHhhcCCCCCCC---HhhHHHHHHHHHHHHHCCCc-eee
Q 005347 42 VSISHHLHTLTRRPHVAGS---EANAEAAAYVLSVFTSCSLE-SHI 83 (701)
Q Consensus 42 ~~i~~~l~~ls~~~r~aGs---~g~~~~a~yi~~~~~~~Gl~-~~~ 83 (701)
+++.+.|+.|.+.+=.+++ .++.++++|+.+.|+++|++ ++.
T Consensus 5 ~~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~ 50 (400)
T PRK13983 5 DEMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVER 50 (400)
T ss_pred HHHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEE
Confidence 4577778888876544433 35789999999999999998 754
No 155
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=26.52 E-value=1.1e+02 Score=33.33 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=33.4
Q ss_pred hHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeee
Q 005347 42 VSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIAS 85 (701)
Q Consensus 42 ~~i~~~l~~ls~~~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~~ 85 (701)
+++.+.|+.|.+.|=.+|. +.++++||.+.|+++|++++..+
T Consensus 2 ~~~~~~l~~Lv~i~s~s~~--e~~~~~~l~~~l~~~G~~~~~~~ 43 (377)
T PRK08588 2 EEKIQILADIVKINSVNDN--EIEVANYLQDLFAKHGIESKIVK 43 (377)
T ss_pred hHHHHHHHHHhcCCCCCCc--HHHHHHHHHHHHHHCCCceEEEe
Confidence 4567778888887766665 57899999999999999976543
No 156
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=26.46 E-value=1.1e+02 Score=33.57 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=32.2
Q ss_pred hHHHHHHHHhhcCCCCCCC-HhhHHHHHHHHHHHHHCCCceeeee
Q 005347 42 VSISHHLHTLTRRPHVAGS-EANAEAAAYVLSVFTSCSLESHIAS 85 (701)
Q Consensus 42 ~~i~~~l~~ls~~~r~aGs-~g~~~~a~yi~~~~~~~Gl~~~~~~ 85 (701)
+++.+.|+.|.+.+=.++. .+..++++||+++|+++|++++..+
T Consensus 6 ~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~ 50 (394)
T PRK08651 6 FDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIE 50 (394)
T ss_pred HHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5666777777776543322 3457899999999999999876554
No 157
>PRK09864 putative peptidase; Provisional
Probab=24.89 E-value=66 Score=35.27 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=22.5
Q ss_pred eeeeeeEEEEecCCCCCCcEEEEEeccCCcCC
Q 005347 321 MATIQNVIGIIPGTEEPDRLVILGNHRDAWTF 352 (701)
Q Consensus 321 ~~~~~NVia~i~G~~~~~~~Ivl~aH~Ds~~~ 352 (701)
.....|+|+.. |.. .+.|+|.||+|..++
T Consensus 39 ~D~~GNli~~~-g~~--~~kvml~AHmDevG~ 67 (356)
T PRK09864 39 FDGLGSFVARK-GNK--GPKVAVVGHMDEVGF 67 (356)
T ss_pred ECCCCCEEEEe-CCC--CcEEEEEecccccCE
Confidence 35678999986 632 347999999999875
No 158
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=23.53 E-value=97 Score=33.70 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=31.1
Q ss_pred HHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceee
Q 005347 45 SHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHI 83 (701)
Q Consensus 45 ~~~l~~ls~~~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~ 83 (701)
.+.++.|.+.|..+|. +.++++||.+.|+++|++++.
T Consensus 2 ~~~~~~L~~ips~s~~--E~~~a~~l~~~l~~~g~~~~~ 38 (363)
T TIGR01891 2 TDIRRHLHEHPELSFE--EFKTSSLIAEALESLGIEVRR 38 (363)
T ss_pred hHHHHHHhcCCCCCCc--hHHHHHHHHHHHHHcCCceEe
Confidence 3567888888888875 679999999999999998754
No 159
>PRK05469 peptidase T; Provisional
Probab=23.26 E-value=1.4e+02 Score=33.01 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=35.6
Q ss_pred CCCchHhHHhcCCceEEEeeeCCCCCcCCCCcccHHHHHhhCCCchHHHHHHHHHHHHHHHHhcC
Q 005347 478 GGSDYAAFIQHIGVPVADMSFGTGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQLAD 542 (701)
Q Consensus 478 ~~SD~~~F~~~~GIPs~~~~~~~~~~~yHT~~Dt~~~i~~~~dp~~~~~~~~a~~~~~l~~~La~ 542 (701)
+++|..-|.. .|||++.+..+. ...|++...++ .+.....++++..++..+|+
T Consensus 354 ggtD~~~~~~-~giP~v~~gpG~--~~~H~~~E~v~---------i~~l~~~~~~~~~~~~~~~~ 406 (408)
T PRK05469 354 GGTDGSQLSF-MGLPCPNIFTGG--HNFHGKFEFVS---------LESMEKAVEVIVEIAELTAE 406 (408)
T ss_pred CcccHHHHhh-CCCceEEECcCc--ccCcCcceeeE---------HHHHHHHHHHHHHHHHHHhc
Confidence 6789877765 699999876532 24688755432 22344667788888887775
No 160
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=23.13 E-value=1.6e+02 Score=32.78 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=29.2
Q ss_pred CCCCCHhhHHHHHHHHHHHHHCCCc-eeeee-eE-EEEeecc
Q 005347 56 HVAGSEANAEAAAYVLSVFTSCSLE-SHIAS-YG-VSLTYPV 94 (701)
Q Consensus 56 r~aGs~g~~~~a~yi~~~~~~~Gl~-~~~~~-y~-v~~~~p~ 94 (701)
..+.++++++.|+|+++.|+++|++ ++.++ +- |+-..|.
T Consensus 25 ~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~~~gnv~~~~~~ 66 (410)
T TIGR01882 25 TCPSTPGQLTFGNMLVDDLKSLGLQDAHYDEKNGYVIATIPS 66 (410)
T ss_pred CCCCCHhHHHHHHHHHHHHHHcCCceEEEcCCceEEEEEecC
Confidence 4566778889999999999999997 87765 33 4333354
No 161
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=23.09 E-value=1.1e+02 Score=33.32 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=28.0
Q ss_pred HHHHhhcCCCCC-CCHhhHHHHHHHHHHHHHCCCceeee
Q 005347 47 HLHTLTRRPHVA-GSEANAEAAAYVLSVFTSCSLESHIA 84 (701)
Q Consensus 47 ~l~~ls~~~r~a-Gs~g~~~~a~yi~~~~~~~Gl~~~~~ 84 (701)
.|+.|.+.+-.+ .+.++.++++|+++.|++.|++++..
T Consensus 3 ~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~ 41 (375)
T TIGR01910 3 LLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVI 41 (375)
T ss_pred hHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEE
Confidence 455566655422 34568899999999999999997654
No 162
>PRK03955 hypothetical protein; Reviewed
Probab=22.76 E-value=2.6e+02 Score=26.12 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=24.4
Q ss_pred CCcccceEEEEEeCC--CchhhHHHHHHHcCC-eEEEEEeC
Q 005347 165 VVNVTGTVVLARYGQ--IFRGDIVHNAFEAGA-AGALIFTD 202 (701)
Q Consensus 165 gv~v~GkIvlv~~g~--~~~~~k~~~A~~~GA-~gvi~~~d 202 (701)
|.+++|||.++..++ +.-+.....+..+|. -..|++.+
T Consensus 46 G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~~ 86 (131)
T PRK03955 46 GESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINLE 86 (131)
T ss_pred CCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEec
Confidence 889999999999765 333344555555664 34455544
No 163
>PRK07522 acetylornithine deacetylase; Provisional
Probab=22.76 E-value=1.3e+02 Score=32.75 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=32.0
Q ss_pred hHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceee
Q 005347 42 VSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHI 83 (701)
Q Consensus 42 ~~i~~~l~~ls~~~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~ 83 (701)
..+.+.|+.|.+.|-.+|.+ ..++++||.++|+++|++++.
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~-~~~~~~~l~~~l~~~G~~~~~ 44 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDS-NLALIEWVRDYLAAHGVESEL 44 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCc-cHHHHHHHHHHHHHcCCeEEE
Confidence 45677888888887766532 248999999999999998754
No 164
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=22.45 E-value=1.3e+02 Score=32.31 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=31.8
Q ss_pred hHHHHHHHHhhcCCCCCCCHhhHHHHHHHHHHHHHCCCceeeee
Q 005347 42 VSISHHLHTLTRRPHVAGSEANAEAAAYVLSVFTSCSLESHIAS 85 (701)
Q Consensus 42 ~~i~~~l~~ls~~~r~aGs~g~~~~a~yi~~~~~~~Gl~~~~~~ 85 (701)
+++.+.|+.|-+.+=. |.++.++++||++.|++.|++++..+
T Consensus 10 ~~~~~~l~~lv~i~s~--s~~e~~~~~~l~~~l~~~g~~~~~~~ 51 (346)
T PRK00466 10 QKAKELLLDLLSIYTP--SGNETNATKFFEKISNELNLKLEILP 51 (346)
T ss_pred HHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4667777777776533 44567999999999999999876544
No 165
>PRK12487 ribonuclease activity regulator protein RraA; Reviewed
Probab=21.73 E-value=3.2e+02 Score=26.50 Aligned_cols=67 Identities=22% Similarity=0.354 Sum_probs=40.9
Q ss_pred cccccCCCcceEeeEEEecCCChhchHHHH-hcCCcccceEEEEEeCC-----CchhhHHHHHHHcCCeEEEEEe
Q 005347 133 TFHGYAKSGTVIGPVVYVNYGRVEDYVTLK-EMVVNVTGTVVLARYGQ-----IFRGDIVHNAFEAGAAGALIFT 201 (701)
Q Consensus 133 ~~~a~S~~G~v~g~lVyv~~G~~~D~~~L~-~~gv~v~GkIvlv~~g~-----~~~~~k~~~A~~~GA~gvi~~~ 201 (701)
.+.++.+...+.|+.+=|-.. +|-..+. .....-.|.|+++..++ ++-+.....|+.+|++|+|+.-
T Consensus 22 ~i~~~~~~~~~~G~A~TV~~~--~d~~~~~~al~~~~~GdVlVid~~g~~~~a~~G~~~a~~a~~~G~aG~VidG 94 (163)
T PRK12487 22 PFKNFGGKRIFWGEIVTVRCF--EDNSKVKEVLAQDGKGKVLVVDGGGSCRRALLGDQIAQSALDNGWEGIVING 94 (163)
T ss_pred hheecCCCCEEEEEEEEEEee--CCcHHHHHHHhcCCCCeEEEEECCCCCCcEeehHHHHHHHHHCCCeEEEEee
Confidence 344566666677776655442 2211121 11234589999998654 2334567889999999998764
No 166
>PRK13381 peptidase T; Provisional
Probab=21.23 E-value=2.9e+02 Score=30.47 Aligned_cols=52 Identities=25% Similarity=0.347 Sum_probs=35.4
Q ss_pred CCCchHhHHhcCCceEEEeeeCCCCCcCCCCcccHHHHHhhCCCchHHHHHHHHHHHHHHHHhc
Q 005347 478 GGSDYAAFIQHIGVPVADMSFGTGYPVYHSMYDDFIWMEKFGDPTFQRHVAAASMWGLVALQLA 541 (701)
Q Consensus 478 ~~SD~~~F~~~~GIPs~~~~~~~~~~~yHT~~Dt~~~i~~~~dp~~~~~~~~a~~~~~l~~~La 541 (701)
+++|..-|.+ .|||++.+..+.. .-|++..-.+ .+.....++++..++.++|
T Consensus 352 g~tDa~~~~~-~giP~v~~GpG~~--~aH~~dE~v~---------i~~l~~~~~v~~~~~~~~~ 403 (404)
T PRK13381 352 GGTDGAALSA-KGLPTPNLFTGAH--NFHSRFEFLP---------VSSFVKSYEVTITICLLAA 403 (404)
T ss_pred ccchHHHHhc-CCCCeEEECcccc--CCcCcceeEE---------HHHHHHHHHHHHHHHHHhc
Confidence 6789876655 6999999865432 3587654332 2335567788888888876
No 167
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=20.78 E-value=84 Score=26.16 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHhhhccCCCC
Q 005347 4 TAITCFLAIATSFSFLLSSPQP 25 (701)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (701)
.+|+|||+..-+|+|+.++.++
T Consensus 56 ~ail~lL~a~Ya~fyl~ls~~~ 77 (79)
T PF15168_consen 56 AAILVLLLAFYAFFYLNLSKEV 77 (79)
T ss_pred HHHHHHHHHHHHHHHHhhcccC
Confidence 3688999999999999888654
No 168
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=20.28 E-value=6.8e+02 Score=23.02 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=30.7
Q ss_pred hhCCCchHHHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHHHHHHhh
Q 005347 517 KFGDPTFQRHVAAASMWGLVALQLADEEFLPFNYLSYAFELQKSTKDLENEV 568 (701)
Q Consensus 517 ~~~dp~~~~~~~~a~~~~~l~~~La~~~~lP~d~~~y~~~l~~~~~~l~~~~ 568 (701)
.|.+|+|+.. ++.-.++...-+..--+.|...-.+.|..-++++++.+
T Consensus 2 ~fl~~dFd~~----~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i 49 (132)
T PF10392_consen 2 AFLSPDFDPV----QFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRI 49 (132)
T ss_pred CCCCCCCCHH----HHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 3678888643 34444444445555567788777777777777777543
No 169
>PRK08262 hypothetical protein; Provisional
Probab=20.14 E-value=1.4e+02 Score=34.07 Aligned_cols=46 Identities=9% Similarity=0.070 Sum_probs=34.1
Q ss_pred CChhHHHHHHHHhhcCCCCCCCHhh-------HHHHHHHHHHHHHCCCceeee
Q 005347 39 SDNVSISHHLHTLTRRPHVAGSEAN-------AEAAAYVLSVFTSCSLESHIA 84 (701)
Q Consensus 39 i~~~~i~~~l~~ls~~~r~aGs~g~-------~~~a~yi~~~~~~~Gl~~~~~ 84 (701)
.+.+.+.+.|+.|-+.|=.++.++. .+.++|+.+.|+..|++++..
T Consensus 41 ~~~~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~ 93 (486)
T PRK08262 41 VDEDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALERE 93 (486)
T ss_pred CCHHHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEE
Confidence 5677888889998887655554322 368999999999999976543
No 170
>PRK06446 hypothetical protein; Provisional
Probab=20.10 E-value=1.9e+02 Score=32.48 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCCCCCC-HhhHHHHHHHHHHHHHCCCceeeee
Q 005347 43 SISHHLHTLTRRPHVAGS-EANAEAAAYVLSVFTSCSLESHIAS 85 (701)
Q Consensus 43 ~i~~~l~~ls~~~r~aGs-~g~~~~a~yi~~~~~~~Gl~~~~~~ 85 (701)
++.+.|+.|-+.+=.++. .+..++++||++.|+++|++++..+
T Consensus 3 ~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~ 46 (436)
T PRK06446 3 EELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIER 46 (436)
T ss_pred hHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEe
Confidence 455667777766544433 2337999999999999999886543
Done!