Query 005349
Match_columns 701
No_of_seqs 402 out of 2484
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 22:03:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12490 BCAS3: Breast carcino 100.0 2.4E-61 5.3E-66 498.5 16.7 241 457-698 1-251 (251)
2 KOG2109 WD40 repeat protein [G 100.0 2E-53 4.4E-58 464.9 17.3 592 2-701 41-643 (788)
3 KOG2110 Uncharacterized conser 100.0 3.9E-33 8.5E-38 289.8 30.9 230 17-412 16-250 (391)
4 KOG2111 Uncharacterized conser 100.0 1.1E-30 2.4E-35 267.4 26.1 238 17-412 16-258 (346)
5 KOG0271 Notchless-like WD40 re 99.9 1.2E-23 2.5E-28 219.6 17.6 283 16-425 167-454 (480)
6 KOG0315 G-protein beta subunit 99.9 3.4E-21 7.3E-26 192.1 26.9 273 21-422 14-300 (311)
7 KOG0263 Transcription initiati 99.9 4.2E-22 9.1E-27 223.8 21.6 179 116-415 472-654 (707)
8 KOG0272 U4/U6 small nuclear ri 99.9 1E-21 2.2E-26 207.5 18.2 242 18-426 188-434 (459)
9 KOG0271 Notchless-like WD40 re 99.9 5.9E-21 1.3E-25 199.5 16.4 230 117-422 137-409 (480)
10 KOG0318 WD40 repeat stress pro 99.8 5.7E-19 1.2E-23 190.8 28.9 333 18-456 203-590 (603)
11 KOG0272 U4/U6 small nuclear ri 99.8 1.8E-20 4E-25 198.0 14.4 222 18-408 232-458 (459)
12 KOG0291 WD40-repeat-containing 99.8 1.5E-18 3.3E-23 193.7 26.3 185 117-420 372-560 (893)
13 KOG0286 G-protein beta subunit 99.8 5.5E-18 1.2E-22 172.6 27.8 244 17-426 67-319 (343)
14 KOG0279 G protein beta subunit 99.8 2.1E-18 4.6E-23 174.7 24.4 185 115-419 83-271 (315)
15 cd00200 WD40 WD40 domain, foun 99.8 3E-17 6.5E-22 165.2 29.9 222 18-408 64-289 (289)
16 KOG0295 WD40 repeat-containing 99.8 1.4E-18 3.1E-23 181.0 19.0 239 18-409 162-405 (406)
17 KOG0315 G-protein beta subunit 99.8 6E-18 1.3E-22 169.0 22.4 230 115-422 18-258 (311)
18 cd00200 WD40 WD40 domain, foun 99.8 8.5E-17 1.8E-21 161.9 30.7 236 18-422 21-261 (289)
19 PLN00181 protein SPA1-RELATED; 99.8 2.4E-17 5.1E-22 198.0 31.3 227 18-409 546-792 (793)
20 KOG0273 Beta-transducin family 99.8 2.4E-17 5.3E-22 176.4 26.4 269 18-410 247-523 (524)
21 KOG0266 WD40 repeat-containing 99.8 3E-17 6.5E-22 185.2 26.3 191 115-423 179-377 (456)
22 KOG0266 WD40 repeat-containing 99.8 6E-17 1.3E-21 182.7 28.0 237 19-422 173-421 (456)
23 KOG0286 G-protein beta subunit 99.8 5.8E-17 1.2E-21 165.2 24.1 182 116-419 76-268 (343)
24 KOG0295 WD40 repeat-containing 99.8 1E-17 2.2E-22 174.7 18.7 236 18-422 120-376 (406)
25 KOG0281 Beta-TrCP (transducin 99.8 8.5E-19 1.8E-23 181.4 9.4 211 26-413 216-431 (499)
26 KOG0265 U5 snRNP-specific prot 99.8 5.4E-17 1.2E-21 165.9 20.8 246 18-426 59-312 (338)
27 KOG0263 Transcription initiati 99.8 2.3E-17 4.9E-22 186.0 19.1 116 294-426 508-623 (707)
28 KOG0268 Sof1-like rRNA process 99.7 1.4E-17 3E-22 173.6 14.8 255 18-412 80-347 (433)
29 KOG0273 Beta-transducin family 99.7 4.6E-17 1E-21 174.3 18.7 198 114-420 254-492 (524)
30 KOG0279 G protein beta subunit 99.7 5.7E-16 1.2E-20 157.2 25.6 225 18-411 76-314 (315)
31 KOG0276 Vesicle coat complex C 99.7 4.5E-17 9.8E-22 178.9 18.5 208 117-445 35-259 (794)
32 KOG0284 Polyadenylation factor 99.7 8.8E-18 1.9E-22 177.2 11.8 225 17-411 108-338 (464)
33 KOG0319 WD40-repeat-containing 99.7 1.4E-16 3E-21 178.1 20.6 250 117-447 303-581 (775)
34 KOG0319 WD40-repeat-containing 99.7 4.3E-16 9.3E-21 174.3 23.9 289 17-424 293-591 (775)
35 KOG0274 Cdc4 and related F-box 99.7 3.5E-16 7.6E-21 178.2 23.8 226 18-418 262-490 (537)
36 PLN00181 protein SPA1-RELATED; 99.7 2.7E-15 5.8E-20 180.3 32.7 181 116-412 554-740 (793)
37 KOG0285 Pleiotropic regulator 99.7 1.7E-16 3.8E-21 165.1 17.7 190 115-426 171-364 (460)
38 KOG0264 Nucleosome remodeling 99.7 1.4E-16 3E-21 170.4 17.3 139 293-447 242-395 (422)
39 KOG0285 Pleiotropic regulator 99.7 4.1E-16 9E-21 162.3 20.3 226 16-412 161-391 (460)
40 KOG0274 Cdc4 and related F-box 99.7 4.7E-16 1E-20 177.2 22.8 231 18-420 219-451 (537)
41 KOG0292 Vesicle coat complex C 99.7 3E-16 6.4E-21 177.7 20.7 266 16-420 19-290 (1202)
42 KOG0278 Serine/threonine kinas 99.7 1.4E-16 3E-21 159.3 15.9 185 17-354 112-299 (334)
43 KOG0288 WD40 repeat protein Ti 99.7 2E-16 4.3E-21 167.3 17.4 225 16-408 230-459 (459)
44 PTZ00421 coronin; Provisional 99.7 1.1E-14 2.4E-19 165.2 32.4 222 27-413 51-293 (493)
45 KOG0276 Vesicle coat complex C 99.7 4.1E-16 8.9E-21 171.4 19.7 233 18-418 26-265 (794)
46 KOG0282 mRNA splicing factor [ 99.7 7.3E-17 1.6E-21 173.4 13.0 244 18-425 228-477 (503)
47 KOG0306 WD40-repeat-containing 99.7 5.6E-16 1.2E-20 173.3 19.6 226 17-411 423-665 (888)
48 KOG1446 Histone H3 (Lys4) meth 99.7 2.4E-14 5.2E-19 147.8 29.9 239 16-420 24-272 (311)
49 KOG1407 WD40 repeat protein [F 99.7 1.6E-15 3.5E-20 152.7 20.6 234 18-419 33-270 (313)
50 KOG0265 U5 snRNP-specific prot 99.7 3.5E-15 7.6E-20 152.8 22.0 238 1-406 71-334 (338)
51 KOG0643 Translation initiation 99.7 7.2E-15 1.6E-19 148.5 23.1 239 18-411 23-318 (327)
52 KOG1036 Mitotic spindle checkp 99.7 1.8E-15 4E-20 155.4 19.2 215 18-400 66-294 (323)
53 KOG0318 WD40 repeat stress pro 99.7 1.5E-14 3.3E-19 156.9 27.0 109 295-418 164-273 (603)
54 KOG0281 Beta-TrCP (transducin 99.7 1.4E-16 3.1E-21 165.0 10.6 226 18-411 247-478 (499)
55 KOG0313 Microtubule binding pr 99.7 1.1E-14 2.3E-19 153.1 24.3 266 17-412 115-420 (423)
56 KOG0647 mRNA export protein (c 99.7 4.6E-15 1E-19 152.0 20.2 217 18-400 85-313 (347)
57 KOG0316 Conserved WD40 repeat- 99.7 4.7E-15 1E-19 147.5 19.1 234 18-423 30-270 (307)
58 KOG0291 WD40-repeat-containing 99.6 2.5E-14 5.5E-19 160.3 25.1 250 15-419 359-621 (893)
59 PTZ00420 coronin; Provisional 99.6 1.4E-13 2.9E-18 157.8 31.4 103 297-412 185-295 (568)
60 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 5.6E-13 1.2E-17 138.7 32.5 270 21-420 5-289 (300)
61 KOG0310 Conserved WD40 repeat- 99.6 1.8E-14 3.9E-19 155.4 20.9 234 5-409 65-308 (487)
62 KOG0292 Vesicle coat complex C 99.6 8E-15 1.7E-19 166.2 18.3 202 117-426 31-254 (1202)
63 PTZ00420 coronin; Provisional 99.6 1.1E-13 2.4E-18 158.5 27.1 106 296-418 143-256 (568)
64 KOG0284 Polyadenylation factor 99.6 2.5E-15 5.3E-20 158.9 11.8 243 5-415 128-385 (464)
65 KOG0288 WD40 repeat protein Ti 99.6 5.3E-15 1.1E-19 156.6 13.8 234 18-419 188-426 (459)
66 KOG0316 Conserved WD40 repeat- 99.6 4.4E-14 9.5E-19 140.6 19.4 182 117-423 39-226 (307)
67 KOG0277 Peroxisomal targeting 99.6 3.9E-14 8.5E-19 142.3 18.5 231 27-422 38-278 (311)
68 KOG0275 Conserved WD40 repeat- 99.6 1.3E-15 2.8E-20 156.6 8.0 124 294-440 278-402 (508)
69 KOG0645 WD40 repeat protein [G 99.6 4E-13 8.8E-18 136.2 25.1 176 117-410 37-225 (312)
70 PTZ00421 coronin; Provisional 99.6 2.5E-13 5.4E-18 154.2 26.1 107 295-417 142-252 (493)
71 KOG0305 Anaphase promoting com 99.6 1.4E-13 3E-18 153.0 23.2 242 17-412 187-463 (484)
72 KOG0296 Angio-associated migra 99.6 2.5E-13 5.4E-18 142.3 23.0 235 16-410 158-398 (399)
73 KOG0310 Conserved WD40 repeat- 99.6 1.1E-13 2.4E-18 149.3 18.5 229 20-418 41-276 (487)
74 KOG0645 WD40 repeat protein [G 99.5 3.5E-12 7.7E-17 129.4 25.7 239 20-410 30-311 (312)
75 KOG1539 WD repeat protein [Gen 99.5 6.3E-12 1.4E-16 142.8 30.2 120 297-418 466-614 (910)
76 KOG2055 WD40 repeat protein [G 99.5 2.7E-13 5.9E-18 145.4 17.9 177 117-412 325-514 (514)
77 KOG0277 Peroxisomal targeting 99.5 1.6E-13 3.6E-18 137.9 15.1 175 115-408 125-307 (311)
78 KOG0308 Conserved WD40 repeat- 99.5 4.1E-14 8.9E-19 156.7 11.6 189 116-424 46-257 (735)
79 KOG0278 Serine/threonine kinas 99.5 3.8E-13 8.1E-18 135.0 16.3 218 113-413 77-300 (334)
80 KOG0289 mRNA splicing factor [ 99.5 2E-12 4.3E-17 138.0 22.5 227 18-410 232-462 (506)
81 KOG0973 Histone transcription 99.5 4.4E-13 9.6E-18 156.1 18.8 172 299-479 35-259 (942)
82 KOG0641 WD40 repeat protein [G 99.5 1.4E-11 3.1E-16 122.0 26.6 241 18-410 101-349 (350)
83 KOG0282 mRNA splicing factor [ 99.5 5E-14 1.1E-18 151.8 10.2 177 115-411 235-416 (503)
84 KOG0264 Nucleosome remodeling 99.5 1.9E-12 4.1E-17 139.0 22.0 112 295-410 289-404 (422)
85 KOG0275 Conserved WD40 repeat- 99.5 5.4E-14 1.2E-18 144.8 9.6 205 114-423 232-480 (508)
86 KOG1539 WD repeat protein [Gen 99.5 3.2E-12 6.9E-17 145.2 23.3 173 116-411 469-649 (910)
87 KOG0772 Uncharacterized conser 99.5 3.6E-13 7.9E-18 145.9 14.9 114 292-418 282-402 (641)
88 KOG0306 WD40-repeat-containing 99.5 5.3E-12 1.1E-16 142.0 24.6 233 117-423 394-635 (888)
89 KOG0308 Conserved WD40 repeat- 99.5 2E-12 4.3E-17 143.6 20.9 108 294-418 186-293 (735)
90 KOG0772 Uncharacterized conser 99.5 9.1E-13 2E-17 142.8 17.6 111 294-419 332-454 (641)
91 KOG0640 mRNA cleavage stimulat 99.5 6.7E-13 1.4E-17 136.5 15.0 105 301-420 238-345 (430)
92 KOG0293 WD40 repeat-containing 99.5 7.7E-13 1.7E-17 140.3 15.8 224 18-412 282-515 (519)
93 KOG1407 WD40 repeat protein [F 99.5 1.4E-11 3.1E-16 124.5 23.9 163 117-401 128-293 (313)
94 KOG0643 Translation initiation 99.5 9.2E-12 2E-16 126.2 21.7 188 117-420 32-230 (327)
95 KOG0269 WD40 repeat-containing 99.4 6.1E-13 1.3E-17 149.9 13.9 117 294-426 192-313 (839)
96 KOG1408 WD40 repeat protein [F 99.4 2.1E-12 4.5E-17 144.0 17.0 214 117-411 481-714 (1080)
97 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 4.9E-11 1.1E-15 124.0 26.1 176 117-414 11-191 (300)
98 KOG4283 Transcription-coupled 99.4 9.1E-12 2E-16 127.5 19.1 111 298-412 165-278 (397)
99 KOG2096 WD40 repeat protein [G 99.4 1.7E-11 3.8E-16 126.6 20.2 94 313-408 270-400 (420)
100 KOG1446 Histone H3 (Lys4) meth 99.4 7.9E-11 1.7E-15 122.0 24.9 221 26-412 79-305 (311)
101 KOG0283 WD40 repeat-containing 99.4 1.5E-11 3.2E-16 140.4 21.3 180 111-413 384-579 (712)
102 KOG1274 WD40 repeat protein [G 99.4 5E-11 1.1E-15 136.9 24.7 177 116-411 75-263 (933)
103 KOG0267 Microtubule severing p 99.4 5E-13 1.1E-17 149.6 8.4 164 117-401 92-259 (825)
104 KOG0305 Anaphase promoting com 99.4 9.7E-12 2.1E-16 138.4 18.5 180 117-419 197-385 (484)
105 KOG4378 Nuclear protein COP1 [ 99.4 5.8E-12 1.3E-16 136.1 14.9 188 117-424 101-295 (673)
106 KOG0299 U3 snoRNP-associated p 99.4 2.4E-11 5.2E-16 130.7 19.1 214 18-399 215-444 (479)
107 KOG0973 Histone transcription 99.4 7.4E-11 1.6E-15 137.8 24.3 238 17-411 80-356 (942)
108 KOG0289 mRNA splicing factor [ 99.4 1.7E-11 3.7E-16 130.9 17.1 109 294-419 318-428 (506)
109 KOG0294 WD40 repeat-containing 99.4 1.3E-10 2.8E-15 120.3 22.9 205 116-412 62-283 (362)
110 KOG0296 Angio-associated migra 99.4 2E-10 4.3E-15 120.8 24.2 183 117-419 86-272 (399)
111 KOG0270 WD40 repeat-containing 99.3 4.6E-11 1E-15 128.1 19.4 101 297-412 348-451 (463)
112 KOG0283 WD40 repeat-containing 99.3 2.9E-11 6.2E-16 138.1 17.4 110 292-420 381-491 (712)
113 KOG0294 WD40 repeat-containing 99.3 3E-11 6.4E-16 125.0 15.8 129 293-423 99-250 (362)
114 KOG0300 WD40 repeat-containing 99.3 1.5E-11 3.3E-16 126.7 13.4 111 293-420 286-397 (481)
115 KOG0267 Microtubule severing p 99.3 1.8E-12 3.8E-17 145.3 7.1 175 117-412 50-228 (825)
116 KOG1332 Vesicle coat complex C 99.3 2E-10 4.2E-15 115.5 19.9 248 18-414 24-290 (299)
117 KOG0307 Vesicle coat complex C 99.3 1.2E-11 2.6E-16 144.9 13.0 233 19-412 81-329 (1049)
118 KOG0639 Transducin-like enhanc 99.3 1.1E-10 2.3E-15 126.5 19.1 261 16-409 430-703 (705)
119 KOG0301 Phospholipase A2-activ 99.3 1.1E-10 2.5E-15 130.6 19.6 168 115-412 120-290 (745)
120 KOG0639 Transducin-like enhanc 99.3 3.2E-11 6.9E-16 130.5 14.3 112 298-413 528-665 (705)
121 KOG0313 Microtubule binding pr 99.3 1.7E-10 3.7E-15 121.7 18.9 118 293-425 273-392 (423)
122 KOG0301 Phospholipase A2-activ 99.3 1.3E-10 2.9E-15 130.1 18.9 207 117-410 35-249 (745)
123 KOG0293 WD40 repeat-containing 99.3 2.2E-11 4.8E-16 129.3 12.1 186 18-353 325-514 (519)
124 KOG1273 WD40 repeat protein [G 99.3 2.6E-10 5.6E-15 118.0 19.3 246 17-417 34-286 (405)
125 KOG2919 Guanine nucleotide-bin 99.3 6.9E-11 1.5E-15 122.5 14.9 111 302-426 231-344 (406)
126 KOG4328 WD40 protein [Function 99.3 3.9E-10 8.4E-15 121.5 21.1 99 299-410 299-399 (498)
127 KOG2445 Nuclear pore complex c 99.3 1.6E-09 3.4E-14 112.1 24.3 108 299-410 197-318 (361)
128 KOG0647 mRNA export protein (c 99.3 7.8E-10 1.7E-14 114.0 22.0 188 116-423 93-294 (347)
129 KOG0268 Sof1-like rRNA process 99.3 4.1E-11 8.8E-16 125.7 12.3 217 114-412 86-304 (433)
130 KOG0641 WD40 repeat protein [G 99.2 1.9E-09 4.1E-14 107.1 23.0 101 293-410 196-303 (350)
131 KOG1274 WD40 repeat protein [G 99.2 6.8E-10 1.5E-14 127.8 22.5 173 117-406 118-296 (933)
132 KOG2096 WD40 repeat protein [G 99.2 1.6E-10 3.4E-15 119.7 15.2 107 294-410 202-308 (420)
133 KOG0299 U3 snoRNP-associated p 99.2 7.3E-10 1.6E-14 119.5 20.7 178 116-412 223-412 (479)
134 KOG2109 WD40 repeat protein [G 99.2 1.6E-11 3.5E-16 136.8 8.0 325 18-423 252-589 (788)
135 KOG1188 WD40 repeat protein [G 99.2 3.3E-10 7.1E-15 118.4 16.2 189 117-418 50-250 (376)
136 KOG4283 Transcription-coupled 99.2 3.4E-09 7.4E-14 109.0 22.1 136 115-354 122-278 (397)
137 KOG0302 Ribosome Assembly prot 99.2 1.8E-10 3.9E-15 121.5 13.1 117 294-425 227-350 (440)
138 KOG0646 WD40 repeat protein [G 99.2 7.9E-10 1.7E-14 119.4 18.3 222 15-391 90-330 (476)
139 KOG2106 Uncharacterized conser 99.2 1.5E-08 3.3E-13 110.3 27.6 104 293-418 382-485 (626)
140 KOG2048 WD40 repeat protein [G 99.2 3.2E-09 7E-14 119.0 23.0 190 116-424 46-247 (691)
141 KOG0640 mRNA cleavage stimulat 99.2 8.5E-10 1.8E-14 113.9 16.8 114 294-409 276-425 (430)
142 KOG0321 WD40 repeat-containing 99.2 3.4E-10 7.3E-15 125.9 14.7 112 299-424 238-362 (720)
143 KOG0302 Ribosome Assembly prot 99.2 1.8E-10 3.9E-15 121.5 11.9 106 292-412 271-380 (440)
144 KOG1036 Mitotic spindle checkp 99.2 4.4E-09 9.6E-14 108.8 21.8 189 116-420 74-272 (323)
145 KOG2106 Uncharacterized conser 99.1 3.7E-08 8E-13 107.4 28.7 100 293-408 420-519 (626)
146 KOG0650 WD40 repeat nucleolar 99.1 5.1E-10 1.1E-14 123.6 14.7 96 299-410 585-680 (733)
147 PRK11028 6-phosphogluconolacto 99.1 5.9E-08 1.3E-12 104.6 29.8 113 298-421 145-269 (330)
148 KOG4328 WD40 protein [Function 99.1 1.5E-09 3.2E-14 117.0 16.9 108 295-410 339-450 (498)
149 KOG1034 Transcriptional repres 99.1 1.9E-09 4.2E-14 112.2 17.0 250 18-409 106-382 (385)
150 KOG1408 WD40 repeat protein [F 99.1 3.4E-09 7.4E-14 118.9 19.9 116 295-426 565-687 (1080)
151 KOG1272 WD40-repeat-containing 99.1 7.8E-11 1.7E-15 126.9 6.8 209 117-409 151-361 (545)
152 KOG2048 WD40 repeat protein [G 99.1 2.7E-08 5.9E-13 111.7 26.7 100 298-414 87-188 (691)
153 KOG0300 WD40 repeat-containing 99.1 6.3E-09 1.4E-13 107.7 19.6 98 296-411 331-429 (481)
154 KOG0646 WD40 repeat protein [G 99.1 2.6E-09 5.7E-14 115.4 16.9 122 293-419 190-316 (476)
155 KOG0269 WD40 repeat-containing 99.1 1.9E-10 4.2E-15 130.1 8.4 103 294-412 149-252 (839)
156 KOG1007 WD repeat protein TSSC 99.1 4.7E-09 1E-13 107.7 17.3 117 294-411 230-362 (370)
157 KOG0650 WD40 repeat nucleolar 99.1 1.5E-08 3.2E-13 112.3 21.8 297 16-407 410-732 (733)
158 KOG2055 WD40 repeat protein [G 99.1 1.1E-08 2.4E-13 110.5 20.4 97 297-411 321-418 (514)
159 PRK11028 6-phosphogluconolacto 99.1 1.4E-07 3E-12 101.7 29.3 105 299-416 195-310 (330)
160 COG2319 FOG: WD40 repeat [Gene 99.1 3E-07 6.4E-12 96.6 30.6 184 116-419 133-323 (466)
161 PRK01742 tolB translocation pr 99.0 5.2E-08 1.1E-12 109.5 26.2 79 325-423 336-416 (429)
162 KOG0322 G-protein beta subunit 99.0 2.9E-09 6.4E-14 108.1 13.6 70 323-409 253-322 (323)
163 KOG1445 Tumor-specific antigen 99.0 1.5E-09 3.2E-14 120.3 11.3 101 295-412 644-752 (1012)
164 KOG1009 Chromatin assembly com 99.0 1.5E-09 3.3E-14 115.6 10.8 131 294-426 29-169 (434)
165 KOG0321 WD40 repeat-containing 99.0 8.3E-09 1.8E-13 115.0 17.0 102 299-416 291-397 (720)
166 KOG1587 Cytoplasmic dynein int 99.0 2.7E-08 5.8E-13 113.7 21.6 98 299-411 418-517 (555)
167 KOG1034 Transcriptional repres 99.0 1.5E-09 3.2E-14 113.0 9.8 100 296-411 110-212 (385)
168 KOG1273 WD40 repeat protein [G 99.0 1.7E-09 3.8E-14 111.9 10.1 127 293-420 37-193 (405)
169 KOG2110 Uncharacterized conser 99.0 3.8E-07 8.3E-12 96.7 26.3 199 118-421 107-343 (391)
170 PRK03629 tolB translocation pr 99.0 5.9E-07 1.3E-11 101.0 29.8 102 302-423 312-418 (429)
171 KOG0290 Conserved WD40 repeat- 98.9 4.2E-08 9.1E-13 101.0 18.3 90 300-401 265-357 (364)
172 KOG0307 Vesicle coat complex C 98.9 3.9E-09 8.6E-14 124.2 9.8 102 296-412 179-286 (1049)
173 COG2319 FOG: WD40 repeat [Gene 98.9 2.4E-06 5.2E-11 89.7 29.7 221 26-413 133-362 (466)
174 KOG1332 Vesicle coat complex C 98.9 1.1E-08 2.3E-13 103.2 10.4 130 293-446 25-164 (299)
175 KOG1007 WD repeat protein TSSC 98.8 1.4E-07 3E-12 97.1 17.8 104 297-416 189-295 (370)
176 PRK05137 tolB translocation pr 98.8 1.9E-06 4.2E-11 96.9 29.0 81 302-401 315-397 (435)
177 KOG0303 Actin-binding protein 98.8 5.4E-08 1.2E-12 103.6 14.1 117 295-428 148-270 (472)
178 KOG2111 Uncharacterized conser 98.8 4.6E-06 9.9E-11 87.2 27.7 112 298-412 200-324 (346)
179 KOG1063 RNA polymerase II elon 98.8 1.8E-07 3.9E-12 105.4 18.5 113 300-414 168-301 (764)
180 KOG0303 Actin-binding protein 98.8 2.1E-08 4.6E-13 106.6 10.6 114 293-424 96-217 (472)
181 PF08662 eIF2A: Eukaryotic tra 98.8 5.5E-08 1.2E-12 97.7 13.1 92 297-410 79-179 (194)
182 KOG1963 WD40 repeat protein [G 98.8 8.4E-07 1.8E-11 102.6 23.9 107 294-418 220-330 (792)
183 KOG1445 Tumor-specific antigen 98.8 5.2E-08 1.1E-12 108.3 13.5 103 295-412 694-800 (1012)
184 KOG0270 WD40 repeat-containing 98.8 4.5E-08 9.8E-13 105.5 12.4 117 293-426 258-377 (463)
185 KOG3881 Uncharacterized conser 98.8 4.1E-07 9E-12 97.0 19.3 107 293-415 218-325 (412)
186 KOG1063 RNA polymerase II elon 98.8 1.6E-08 3.4E-13 113.7 8.6 99 301-412 552-650 (764)
187 KOG1517 Guanine nucleotide bin 98.8 2.9E-07 6.2E-12 107.7 18.6 109 293-413 1271-1384(1387)
188 PRK04922 tolB translocation pr 98.7 2.4E-06 5.2E-11 96.1 25.1 89 302-409 317-410 (433)
189 PRK02889 tolB translocation pr 98.7 9E-06 1.9E-10 91.4 28.9 72 324-413 330-404 (427)
190 KOG0290 Conserved WD40 repeat- 98.7 4.5E-07 9.9E-12 93.5 16.0 107 293-414 211-322 (364)
191 KOG1963 WD40 repeat protein [G 98.7 3.9E-07 8.4E-12 105.3 17.4 104 299-415 179-286 (792)
192 KOG0649 WD40 repeat protein [G 98.7 1.3E-06 2.8E-11 88.3 18.8 103 297-418 132-243 (325)
193 KOG0771 Prolactin regulatory e 98.7 3.7E-08 8.1E-13 105.6 7.8 129 293-423 158-325 (398)
194 KOG0642 Cell-cycle nuclear pro 98.7 6.6E-08 1.4E-12 106.8 9.9 112 293-411 308-427 (577)
195 KOG0644 Uncharacterized conser 98.7 7E-08 1.5E-12 110.3 10.0 99 296-411 370-469 (1113)
196 KOG0771 Prolactin regulatory e 98.7 2.7E-07 5.8E-12 99.2 13.5 74 322-411 282-355 (398)
197 KOG2394 WD40 protein DMR-N9 [G 98.6 6.2E-08 1.3E-12 106.4 7.3 92 313-421 282-373 (636)
198 PRK01742 tolB translocation pr 98.6 1.4E-06 3.1E-11 97.8 18.5 89 303-412 274-363 (429)
199 KOG4378 Nuclear protein COP1 [ 98.6 9.7E-07 2.1E-11 96.4 16.0 207 18-392 92-305 (673)
200 KOG1517 Guanine nucleotide bin 98.6 3.8E-06 8.1E-11 98.7 21.1 105 293-410 1223-1333(1387)
201 KOG1524 WD40 repeat-containing 98.5 1.3E-06 2.8E-11 96.2 15.3 82 293-405 200-281 (737)
202 KOG1188 WD40 repeat protein [G 98.5 7.5E-07 1.6E-11 93.6 12.5 106 296-415 89-201 (376)
203 KOG2394 WD40 protein DMR-N9 [G 98.5 9.2E-07 2E-11 97.5 12.4 61 293-354 304-364 (636)
204 PRK04922 tolB translocation pr 98.5 1.5E-05 3.2E-10 89.8 22.1 92 301-411 272-369 (433)
205 PF08662 eIF2A: Eukaryotic tra 98.5 8.3E-06 1.8E-10 82.0 17.8 50 300-352 124-179 (194)
206 PF00400 WD40: WD domain, G-be 98.5 3.8E-07 8.2E-12 66.6 5.9 38 312-350 2-39 (39)
207 TIGR02800 propeller_TolB tol-p 98.5 8.3E-05 1.8E-09 82.6 27.3 84 302-404 303-388 (417)
208 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00057 1.2E-08 74.8 32.8 101 301-418 215-338 (352)
209 PRK03629 tolB translocation pr 98.4 3.8E-05 8.2E-10 86.5 23.5 92 302-411 268-364 (429)
210 PRK00178 tolB translocation pr 98.4 0.0003 6.5E-09 78.9 30.3 94 302-414 312-408 (430)
211 PF10282 Lactonase: Lactonase, 98.4 0.0011 2.3E-08 72.6 32.8 84 323-419 246-331 (345)
212 PRK05137 tolB translocation pr 98.4 6.9E-05 1.5E-09 84.4 24.1 91 301-409 270-365 (435)
213 KOG2139 WD40 repeat protein [G 98.4 2.5E-05 5.5E-10 82.9 18.7 102 299-418 216-317 (445)
214 KOG2445 Nuclear pore complex c 98.4 5.6E-06 1.2E-10 86.2 13.5 116 293-416 27-150 (361)
215 PRK02889 tolB translocation pr 98.3 2.9E-05 6.4E-10 87.3 20.4 95 302-412 265-362 (427)
216 KOG1538 Uncharacterized conser 98.3 1.2E-06 2.6E-11 98.3 8.7 144 138-408 14-160 (1081)
217 PF02239 Cytochrom_D1: Cytochr 98.3 0.00017 3.7E-09 79.7 25.8 179 117-414 16-206 (369)
218 KOG1310 WD40 repeat protein [G 98.3 9.4E-07 2E-11 97.4 7.4 82 314-411 43-126 (758)
219 KOG0644 Uncharacterized conser 98.3 2E-07 4.4E-12 106.6 1.8 97 293-410 204-300 (1113)
220 KOG0322 G-protein beta subunit 98.3 3.8E-06 8.1E-11 85.9 10.1 58 293-351 265-322 (323)
221 KOG0642 Cell-cycle nuclear pro 98.3 1E-05 2.2E-10 90.0 13.9 58 295-353 505-562 (577)
222 KOG1587 Cytoplasmic dynein int 98.3 3.6E-05 7.7E-10 88.5 18.6 105 293-413 362-475 (555)
223 KOG2919 Guanine nucleotide-bin 98.3 4.4E-05 9.5E-10 80.1 17.2 110 299-425 177-297 (406)
224 PRK04792 tolB translocation pr 98.2 0.00076 1.6E-08 76.5 28.8 51 117-167 242-298 (448)
225 KOG1009 Chromatin assembly com 98.2 1.2E-05 2.7E-10 86.3 13.2 135 295-446 81-242 (434)
226 PRK01029 tolB translocation pr 98.2 0.00047 1E-08 77.7 26.0 92 303-411 307-404 (428)
227 PF02239 Cytochrom_D1: Cytochr 98.2 1.5E-05 3.2E-10 88.1 13.5 105 297-419 12-117 (369)
228 KOG2321 WD40 repeat protein [G 98.2 0.00018 3.9E-09 80.4 20.6 189 117-418 155-351 (703)
229 TIGR02800 propeller_TolB tol-p 98.2 0.00026 5.7E-09 78.6 22.4 93 301-411 258-355 (417)
230 KOG3881 Uncharacterized conser 98.0 0.00022 4.8E-09 76.6 17.5 80 297-394 265-345 (412)
231 KOG4547 WD40 repeat-containing 98.0 0.00014 2.9E-09 81.6 16.6 112 297-427 76-189 (541)
232 PRK04792 tolB translocation pr 98.0 0.00074 1.6E-08 76.6 22.8 93 302-412 287-382 (448)
233 PRK00178 tolB translocation pr 98.0 0.0013 2.8E-08 73.8 23.4 93 301-411 267-364 (430)
234 KOG0974 WD-repeat protein WDR6 97.9 3.2E-05 6.9E-10 91.2 10.2 96 297-410 151-246 (967)
235 KOG4415 Uncharacterized conser 97.9 5.2E-06 1.1E-10 80.5 2.7 32 635-666 28-60 (247)
236 KOG1523 Actin-related protein 97.9 0.00034 7.4E-09 73.6 15.4 112 298-412 119-238 (361)
237 PRK04043 tolB translocation pr 97.9 0.018 4E-07 64.8 30.3 50 117-166 213-268 (419)
238 PF00400 WD40: WD domain, G-be 97.9 5.2E-05 1.1E-09 55.1 6.6 37 370-408 3-39 (39)
239 KOG2315 Predicted translation 97.9 0.0026 5.6E-08 71.3 22.6 92 297-410 290-390 (566)
240 KOG1240 Protein kinase contain 97.8 0.0031 6.6E-08 76.1 24.2 102 297-412 1213-1336(1431)
241 PF10282 Lactonase: Lactonase, 97.8 0.051 1.1E-06 59.4 32.5 108 301-418 166-283 (345)
242 KOG2139 WD40 repeat protein [G 97.8 5.6E-05 1.2E-09 80.4 8.6 77 317-410 192-268 (445)
243 KOG4497 Uncharacterized conser 97.8 0.00035 7.5E-09 73.7 13.5 94 297-408 110-238 (447)
244 KOG0649 WD40 repeat protein [G 97.8 0.0022 4.9E-08 65.4 18.7 64 115-178 134-201 (325)
245 KOG3914 WD repeat protein WDR4 97.8 5.9E-05 1.3E-09 81.2 8.0 100 298-415 129-228 (390)
246 COG2706 3-carboxymuconate cycl 97.8 0.041 8.8E-07 59.2 28.8 106 300-418 212-329 (346)
247 KOG1524 WD40 repeat-containing 97.8 0.00011 2.4E-09 81.3 9.9 113 293-409 77-215 (737)
248 KOG1538 Uncharacterized conser 97.8 3.3E-05 7.1E-10 87.1 5.7 90 300-409 32-121 (1081)
249 PRK01029 tolB translocation pr 97.7 0.0026 5.6E-08 71.8 21.0 77 322-412 281-361 (428)
250 PLN02919 haloacid dehalogenase 97.7 0.021 4.5E-07 71.4 30.2 74 325-413 807-891 (1057)
251 KOG0974 WD-repeat protein WDR6 97.7 0.00047 1E-08 81.7 14.5 101 296-415 192-293 (967)
252 KOG1064 RAVE (regulator of V-A 97.7 0.00014 3.1E-09 89.7 9.7 92 298-418 2312-2406(2439)
253 KOG2315 Predicted translation 97.6 0.0061 1.3E-07 68.4 21.3 50 300-352 335-390 (566)
254 KOG4227 WD40 repeat protein [G 97.6 0.00038 8.2E-09 74.6 11.4 107 294-415 71-184 (609)
255 KOG2321 WD40 repeat protein [G 97.6 0.0005 1.1E-08 77.0 12.4 112 293-420 189-312 (703)
256 TIGR03300 assembly_YfgL outer 97.6 0.032 6.9E-07 61.4 26.6 103 296-420 246-348 (377)
257 PF13360 PQQ_2: PQQ-like domai 97.6 0.027 5.9E-07 57.1 24.2 91 300-412 131-232 (238)
258 KOG4547 WD40 repeat-containing 97.6 0.0064 1.4E-07 68.6 20.6 98 295-411 118-221 (541)
259 KOG1334 WD40 repeat protein [G 97.5 0.0012 2.5E-08 72.9 13.3 85 322-412 337-426 (559)
260 KOG1272 WD40-repeat-containing 97.5 8.2E-05 1.8E-09 81.2 4.3 108 294-418 224-331 (545)
261 KOG1912 WD40 repeat protein [G 97.5 0.0012 2.7E-08 76.0 13.5 102 295-412 441-553 (1062)
262 KOG1310 WD40 repeat protein [G 97.5 0.00034 7.4E-09 77.8 8.5 112 293-411 64-179 (758)
263 KOG1409 Uncharacterized conser 97.4 0.0043 9.2E-08 66.1 15.8 100 297-412 171-272 (404)
264 KOG1240 Protein kinase contain 97.4 0.00062 1.3E-08 81.8 10.3 96 306-412 1034-1130(1431)
265 KOG1354 Serine/threonine prote 97.4 0.0034 7.4E-08 66.8 14.7 78 322-412 273-361 (433)
266 smart00320 WD40 WD40 repeats. 97.3 0.00062 1.3E-08 46.3 5.7 39 311-350 2-40 (40)
267 TIGR03300 assembly_YfgL outer 97.3 0.076 1.7E-06 58.4 24.8 90 299-408 287-377 (377)
268 KOG4497 Uncharacterized conser 97.3 0.0019 4.1E-08 68.3 10.8 86 298-401 68-154 (447)
269 PF13360 PQQ_2: PQQ-like domai 97.3 0.2 4.4E-06 50.6 25.8 57 117-173 3-64 (238)
270 PF11768 DUF3312: Protein of u 97.2 0.0024 5.1E-08 72.4 12.1 91 303-412 238-331 (545)
271 COG4946 Uncharacterized protei 97.2 0.0037 8E-08 68.8 13.0 104 297-419 377-485 (668)
272 KOG0280 Uncharacterized conser 97.2 0.0017 3.7E-08 67.8 9.9 105 297-416 139-247 (339)
273 TIGR02658 TTQ_MADH_Hv methylam 97.1 0.0059 1.3E-07 66.9 13.7 98 301-414 27-140 (352)
274 KOG4227 WD40 repeat protein [G 97.1 0.00051 1.1E-08 73.6 5.2 100 313-423 48-147 (609)
275 COG2706 3-carboxymuconate cycl 97.1 0.07 1.5E-06 57.4 21.2 99 324-435 147-247 (346)
276 KOG1275 PAB-dependent poly(A) 97.0 0.022 4.7E-07 67.3 16.5 183 116-409 156-341 (1118)
277 PF04762 IKI3: IKI3 family; I 96.9 0.81 1.8E-05 56.7 30.7 97 301-412 237-335 (928)
278 KOG1523 Actin-related protein 96.9 0.0054 1.2E-07 64.8 10.2 102 296-411 27-131 (361)
279 KOG1275 PAB-dependent poly(A) 96.8 0.018 3.9E-07 68.0 14.0 101 18-168 148-259 (1118)
280 PF07433 DUF1513: Protein of u 96.8 0.34 7.3E-06 52.0 22.5 102 302-412 139-249 (305)
281 KOG4532 WD40-like repeat conta 96.8 0.12 2.6E-06 53.8 18.1 97 293-401 217-323 (344)
282 PRK04043 tolB translocation pr 96.7 0.32 7E-06 54.8 23.0 81 301-401 257-339 (419)
283 COG5354 Uncharacterized protei 96.5 0.28 6E-06 55.1 20.4 90 301-410 255-348 (561)
284 KOG1645 RING-finger-containing 96.5 0.0064 1.4E-07 65.9 7.2 96 303-416 175-272 (463)
285 PLN02919 haloacid dehalogenase 96.2 0.78 1.7E-05 57.7 24.7 87 324-411 742-834 (1057)
286 PF15492 Nbas_N: Neuroblastoma 96.2 0.96 2.1E-05 47.6 21.0 99 320-418 146-267 (282)
287 PF08450 SGL: SMP-30/Gluconola 96.1 1.9 4.2E-05 44.3 25.0 99 301-410 115-213 (246)
288 PF03178 CPSF_A: CPSF A subuni 96.1 0.4 8.6E-06 51.7 18.8 95 301-411 107-203 (321)
289 KOG0280 Uncharacterized conser 96.0 0.021 4.6E-07 59.8 7.8 104 295-415 182-289 (339)
290 KOG0309 Conserved WD40 repeat- 96.0 0.039 8.5E-07 63.8 10.5 104 295-415 131-237 (1081)
291 KOG1064 RAVE (regulator of V-A 95.9 0.066 1.4E-06 67.5 12.8 116 294-414 2223-2370(2439)
292 COG3386 Gluconolactonase [Carb 95.9 0.77 1.7E-05 49.6 19.7 100 301-410 143-243 (307)
293 KOG4190 Uncharacterized conser 95.9 0.022 4.7E-07 63.8 7.9 118 293-413 749-909 (1034)
294 KOG0309 Conserved WD40 repeat- 95.9 0.053 1.1E-06 62.8 11.1 113 300-428 179-305 (1081)
295 KOG1645 RING-finger-containing 95.9 0.44 9.6E-06 52.2 17.4 52 115-166 214-269 (463)
296 PF15492 Nbas_N: Neuroblastoma 95.7 3.4 7.3E-05 43.7 23.3 35 319-354 227-261 (282)
297 KOG4532 WD40-like repeat conta 95.6 0.14 3E-06 53.4 11.7 100 299-414 136-237 (344)
298 KOG4640 Anaphase-promoting com 95.5 0.051 1.1E-06 62.2 9.1 76 323-417 22-99 (665)
299 smart00320 WD40 WD40 repeats. 95.3 0.031 6.7E-07 37.5 4.2 28 381-408 13-40 (40)
300 KOG4190 Uncharacterized conser 95.3 0.016 3.5E-07 64.8 4.0 148 313-472 727-889 (1034)
301 KOG2695 WD40 repeat protein [G 95.2 0.053 1.2E-06 58.1 7.5 104 296-412 269-378 (425)
302 COG0823 TolB Periplasmic compo 95.2 0.39 8.4E-06 54.3 14.7 50 117-166 218-273 (425)
303 PF04762 IKI3: IKI3 family; I 95.2 12 0.00026 46.6 28.7 74 320-409 303-378 (928)
304 KOG1354 Serine/threonine prote 95.2 0.12 2.7E-06 55.3 9.9 80 322-415 26-121 (433)
305 KOG2314 Translation initiation 95.1 0.055 1.2E-06 61.0 7.4 93 302-412 232-336 (698)
306 KOG3914 WD repeat protein WDR4 95.1 0.36 7.8E-06 52.7 13.3 60 293-354 165-225 (390)
307 KOG1912 WD40 repeat protein [G 95.0 0.28 6.1E-06 57.5 13.0 99 295-410 83-186 (1062)
308 PRK11138 outer membrane biogen 95.0 1.7 3.6E-05 48.3 19.2 57 117-173 130-188 (394)
309 PRK11138 outer membrane biogen 94.7 8.6 0.00019 42.7 25.9 90 299-409 302-393 (394)
310 KOG3621 WD40 repeat-containing 94.6 0.089 1.9E-06 60.9 7.7 102 297-411 51-155 (726)
311 KOG4714 Nucleoporin [Nuclear s 94.6 0.1 2.3E-06 54.0 7.3 112 295-408 196-316 (319)
312 KOG1334 WD40 repeat protein [G 94.4 0.066 1.4E-06 59.5 6.0 98 313-426 134-236 (559)
313 KOG2695 WD40 repeat protein [G 94.4 0.086 1.9E-06 56.5 6.6 112 299-425 232-347 (425)
314 PF03178 CPSF_A: CPSF A subuni 94.4 8.9 0.00019 41.2 28.8 50 117-166 62-118 (321)
315 KOG2066 Vacuolar assembly/sort 94.3 0.16 3.5E-06 59.6 9.1 94 295-415 53-151 (846)
316 PF08450 SGL: SMP-30/Gluconola 94.2 0.74 1.6E-05 47.4 13.1 97 302-414 61-168 (246)
317 PF12894 Apc4_WD40: Anaphase-p 94.1 0.14 3E-06 39.6 5.6 31 380-410 11-41 (47)
318 COG5354 Uncharacterized protei 93.8 0.14 2.9E-06 57.5 6.8 88 305-412 16-118 (561)
319 PF07433 DUF1513: Protein of u 93.8 6.7 0.00015 42.3 19.4 70 321-412 216-285 (305)
320 KOG4714 Nucleoporin [Nuclear s 93.8 0.068 1.5E-06 55.4 4.2 95 301-411 159-255 (319)
321 KOG4640 Anaphase-promoting com 93.7 0.2 4.2E-06 57.6 8.1 60 293-354 34-94 (665)
322 KOG2041 WD40 repeat protein [G 93.7 0.12 2.5E-06 59.9 6.2 99 294-407 29-142 (1189)
323 COG5170 CDC55 Serine/threonine 93.2 0.18 3.9E-06 53.4 6.3 104 294-412 237-369 (460)
324 COG4946 Uncharacterized protei 93.0 1.3 2.8E-05 49.6 12.7 124 301-446 341-464 (668)
325 KOG2314 Translation initiation 92.8 0.25 5.5E-06 55.9 7.0 78 323-420 212-300 (698)
326 PRK02888 nitrous-oxide reducta 92.6 1.2 2.6E-05 52.2 12.5 113 297-413 211-354 (635)
327 cd00216 PQQ_DH Dehydrogenases 92.4 18 0.0004 41.5 22.0 57 117-173 71-138 (488)
328 PF12894 Apc4_WD40: Anaphase-p 92.4 0.31 6.7E-06 37.6 5.0 29 322-351 12-40 (47)
329 KOG1920 IkappaB kinase complex 92.2 20 0.00044 44.7 22.2 97 301-412 222-324 (1265)
330 PF14783 BBS2_Mid: Ciliary BBS 91.8 1.7 3.8E-05 39.8 10.0 65 324-409 2-70 (111)
331 KOG3617 WD40 and TPR repeat-co 91.5 0.27 5.9E-06 58.0 5.5 98 299-415 39-136 (1416)
332 PF11768 DUF3312: Protein of u 91.5 0.38 8.2E-06 55.0 6.6 59 293-354 273-331 (545)
333 KOG2041 WD40 repeat protein [G 91.4 0.92 2E-05 52.9 9.4 97 294-410 86-186 (1189)
334 KOG0882 Cyclophilin-related pe 91.4 0.59 1.3E-05 51.9 7.6 114 298-415 119-236 (558)
335 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.0 15 0.00034 42.7 19.4 79 300-395 440-518 (527)
336 PF06433 Me-amine-dh_H: Methyl 90.8 0.6 1.3E-05 50.8 7.0 58 117-174 269-331 (342)
337 KOG2066 Vacuolar assembly/sort 90.7 9.5 0.00021 45.5 16.8 75 316-410 155-233 (846)
338 PF04053 Coatomer_WDAD: Coatom 90.6 16 0.00035 41.6 18.6 58 333-411 117-174 (443)
339 PF00930 DPPIV_N: Dipeptidyl p 90.0 0.71 1.5E-05 50.6 7.0 102 300-411 22-132 (353)
340 PF08553 VID27: VID27 cytoplas 89.7 4.2 9.1E-05 49.2 13.5 59 292-352 589-647 (794)
341 KOG2079 Vacuolar assembly/sort 88.7 1 2.2E-05 54.8 7.3 97 297-409 105-202 (1206)
342 PF00780 CNH: CNH domain; Int 88.6 10 0.00023 39.4 14.3 44 131-174 223-266 (275)
343 PF10313 DUF2415: Uncharacteri 88.0 1.3 2.9E-05 33.5 5.0 32 322-354 1-35 (43)
344 COG5170 CDC55 Serine/threonine 87.7 0.99 2.2E-05 48.0 5.7 77 322-412 27-119 (460)
345 PF10168 Nup88: Nuclear pore c 87.6 12 0.00027 45.1 15.6 92 322-416 85-185 (717)
346 KOG1832 HIV-1 Vpr-binding prot 87.5 0.31 6.6E-06 57.9 2.0 106 293-417 1115-1221(1516)
347 KOG0882 Cyclophilin-related pe 87.2 5.9 0.00013 44.3 11.4 101 312-414 192-309 (558)
348 COG0823 TolB Periplasmic compo 87.1 2.3 4.9E-05 48.1 8.7 96 301-416 218-318 (425)
349 PF06433 Me-amine-dh_H: Methyl 86.4 56 0.0012 35.9 19.6 105 298-419 202-329 (342)
350 COG3391 Uncharacterized conser 86.4 11 0.00024 41.8 13.6 95 298-410 93-190 (381)
351 KOG2395 Protein involved in va 86.3 37 0.0008 39.1 17.2 59 292-352 442-500 (644)
352 PF10313 DUF2415: Uncharacteri 86.3 2.2 4.7E-05 32.4 5.3 29 383-411 3-34 (43)
353 PF04841 Vps16_N: Vps16, N-ter 86.1 65 0.0014 36.3 25.0 46 117-163 61-109 (410)
354 cd00216 PQQ_DH Dehydrogenases 86.1 70 0.0015 36.8 20.3 22 391-412 405-426 (488)
355 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.0 76 0.0016 37.0 24.0 59 117-175 130-201 (527)
356 PF00930 DPPIV_N: Dipeptidyl p 85.6 60 0.0013 35.5 19.1 50 117-166 23-74 (353)
357 PRK02888 nitrous-oxide reducta 85.5 6 0.00013 46.5 11.1 106 300-411 295-405 (635)
358 KOG2114 Vacuolar assembly/sort 84.5 4.5 9.7E-05 48.5 9.4 107 294-409 38-154 (933)
359 PRK13616 lipoprotein LpqB; Pro 84.4 6.1 0.00013 46.7 10.8 100 301-418 379-485 (591)
360 KOG2079 Vacuolar assembly/sort 84.2 1.4 3.1E-05 53.6 5.4 73 332-421 98-171 (1206)
361 KOG2444 WD40 repeat protein [G 84.2 2.2 4.7E-05 43.9 5.9 105 294-415 73-182 (238)
362 PF08553 VID27: VID27 cytoplas 83.3 5.1 0.00011 48.5 9.6 93 299-410 550-647 (794)
363 PF14783 BBS2_Mid: Ciliary BBS 83.0 31 0.00066 31.8 12.3 89 293-405 17-109 (111)
364 PF14655 RAB3GAP2_N: Rab3 GTPa 82.9 8.5 0.00018 43.4 10.6 90 314-419 300-407 (415)
365 PF02897 Peptidase_S9_N: Proly 81.7 7.7 0.00017 43.2 9.8 76 323-415 125-215 (414)
366 PF08728 CRT10: CRT10; InterP 81.1 72 0.0016 38.5 17.7 74 322-409 164-245 (717)
367 KOG1409 Uncharacterized conser 80.8 11 0.00024 41.0 9.8 113 310-426 103-244 (404)
368 PF00780 CNH: CNH domain; Int 80.3 77 0.0017 32.8 24.7 40 18-59 7-46 (275)
369 PF08596 Lgl_C: Lethal giant l 80.2 1.1E+02 0.0023 34.5 19.7 96 299-410 233-335 (395)
370 PRK13616 lipoprotein LpqB; Pro 78.5 13 0.00029 43.8 10.8 103 300-416 429-531 (591)
371 PF08596 Lgl_C: Lethal giant l 76.1 21 0.00046 40.0 11.0 83 313-411 78-174 (395)
372 PF14781 BBS2_N: Ciliary BBSom 75.7 17 0.00037 34.5 8.5 45 126-170 37-88 (136)
373 KOG1832 HIV-1 Vpr-binding prot 75.4 3.5 7.6E-05 49.5 4.7 88 312-416 1092-1181(1516)
374 COG3386 Gluconolactonase [Carb 75.1 22 0.00048 38.5 10.5 75 322-411 111-194 (307)
375 KOG1916 Nuclear protein, conta 73.8 2.4 5.1E-05 50.9 2.8 106 297-415 201-328 (1283)
376 PF12234 Rav1p_C: RAVE protein 73.8 37 0.00079 40.4 12.5 102 300-409 50-155 (631)
377 PF07676 PD40: WD40-like Beta 73.3 8.9 0.00019 27.6 4.9 31 319-349 6-38 (39)
378 KOG3617 WD40 and TPR repeat-co 73.3 7.1 0.00015 46.8 6.4 56 296-352 76-131 (1416)
379 COG3391 Uncharacterized conser 71.9 64 0.0014 35.9 13.5 94 299-411 138-240 (381)
380 PF07676 PD40: WD40-like Beta 71.1 9 0.0002 27.6 4.5 26 382-407 10-38 (39)
381 KOG1920 IkappaB kinase complex 67.3 25 0.00054 44.0 9.4 68 322-407 69-136 (1265)
382 PF02897 Peptidase_S9_N: Proly 66.6 44 0.00095 37.1 11.0 99 298-411 147-261 (414)
383 TIGR02276 beta_rpt_yvtn 40-res 66.4 34 0.00073 24.5 6.8 24 331-354 1-24 (42)
384 PF05694 SBP56: 56kDa selenium 66.2 73 0.0016 36.2 12.1 108 299-416 220-348 (461)
385 KOG2114 Vacuolar assembly/sort 65.3 3.3E+02 0.0072 33.4 21.3 51 301-353 193-244 (933)
386 PF05096 Glu_cyclase_2: Glutam 64.8 2E+02 0.0043 30.6 21.6 56 117-172 68-127 (264)
387 KOG1008 Uncharacterized conser 63.9 2.3 5E-05 49.3 0.1 103 297-410 76-184 (783)
388 PF04053 Coatomer_WDAD: Coatom 63.5 37 0.00079 38.8 9.5 85 298-391 123-207 (443)
389 KOG4460 Nuclear pore complex, 63.0 1E+02 0.0022 35.7 12.4 90 322-414 104-202 (741)
390 KOG4649 PQQ (pyrrolo-quinoline 62.6 45 0.00097 35.3 9.0 86 296-398 68-154 (354)
391 PF12657 TFIIIC_delta: Transcr 62.5 57 0.0012 31.9 9.6 30 382-411 87-122 (173)
392 COG3490 Uncharacterized protei 62.0 1.1E+02 0.0023 33.0 11.7 42 299-340 138-180 (366)
393 PF10647 Gmad1: Lipoprotein Lp 61.4 76 0.0017 33.1 10.9 74 323-410 67-144 (253)
394 KOG1897 Damage-specific DNA bi 60.5 4.3E+02 0.0093 33.1 25.0 84 315-411 709-816 (1096)
395 PF14870 PSII_BNR: Photosynthe 60.2 45 0.00098 36.1 9.1 70 321-408 144-213 (302)
396 smart00036 CNH Domain found in 60.0 1.7E+02 0.0037 31.4 13.6 43 131-173 238-280 (302)
397 KOG1008 Uncharacterized conser 59.1 3.5 7.5E-05 47.9 0.3 99 299-416 127-232 (783)
398 PF06977 SdiA-regulated: SdiA- 58.9 1.3E+02 0.0028 31.6 11.9 83 316-415 16-99 (248)
399 PF14583 Pectate_lyase22: Olig 58.0 1.2E+02 0.0026 34.0 12.0 98 299-410 262-381 (386)
400 PF12234 Rav1p_C: RAVE protein 57.9 1.3E+02 0.0029 35.9 12.9 81 315-411 23-105 (631)
401 PF07569 Hira: TUP1-like enhan 55.7 63 0.0014 33.2 8.9 73 329-411 18-96 (219)
402 PF05787 DUF839: Bacterial pro 55.3 25 0.00054 41.0 6.5 72 325-398 439-519 (524)
403 PF06977 SdiA-regulated: SdiA- 53.4 2.4E+02 0.0052 29.6 12.9 108 294-411 37-148 (248)
404 PF05096 Glu_cyclase_2: Glutam 51.0 82 0.0018 33.4 8.9 58 115-172 108-166 (264)
405 COG3211 PhoX Predicted phospha 50.4 38 0.00083 39.4 6.7 65 324-398 502-571 (616)
406 PF01731 Arylesterase: Arylest 49.9 81 0.0018 27.6 7.3 49 301-352 36-84 (86)
407 PF07569 Hira: TUP1-like enhan 49.6 29 0.00063 35.6 5.3 38 131-168 7-45 (219)
408 KOG0183 20S proteasome, regula 49.5 6.8 0.00015 39.7 0.6 22 521-542 6-29 (249)
409 KOG3621 WD40 repeat-containing 48.8 32 0.00069 40.7 5.9 77 321-413 33-109 (726)
410 PF11715 Nup160: Nucleoporin N 46.8 77 0.0017 36.8 8.9 36 383-418 217-256 (547)
411 KOG1916 Nuclear protein, conta 44.9 7.1 0.00015 47.1 -0.0 96 299-412 151-267 (1283)
412 PF10214 Rrn6: RNA polymerase 44.7 1E+02 0.0022 37.7 9.8 80 322-413 146-235 (765)
413 PF14781 BBS2_N: Ciliary BBSom 44.3 2.6E+02 0.0056 26.7 10.2 57 116-172 72-134 (136)
414 KOG2395 Protein involved in va 43.3 88 0.0019 36.2 8.1 92 299-409 402-499 (644)
415 PF14761 HPS3_N: Hermansky-Pud 42.9 1.2E+02 0.0026 31.3 8.3 60 325-401 21-80 (215)
416 PF13570 PQQ_3: PQQ-like domai 42.8 59 0.0013 23.5 4.7 23 142-164 17-40 (40)
417 PF14269 Arylsulfotran_2: Aryl 42.7 86 0.0019 33.8 7.8 71 324-410 146-220 (299)
418 PRK10115 protease 2; Provision 42.1 1.1E+02 0.0024 36.9 9.5 73 322-412 127-209 (686)
419 PF10214 Rrn6: RNA polymerase 41.2 7.6E+02 0.016 30.3 17.7 103 293-413 160-279 (765)
420 TIGR03074 PQQ_membr_DH membran 40.0 8E+02 0.017 30.2 22.4 56 117-172 204-287 (764)
421 KOG4649 PQQ (pyrrolo-quinoline 39.9 3.4E+02 0.0073 29.0 11.0 106 297-422 29-135 (354)
422 PF14870 PSII_BNR: Photosynthe 39.2 2.4E+02 0.0053 30.5 10.6 69 318-401 183-253 (302)
423 TIGR03606 non_repeat_PQQ dehyd 38.0 1.3E+02 0.0027 34.6 8.5 20 324-343 148-167 (454)
424 KOG1897 Damage-specific DNA bi 37.3 9.5E+02 0.021 30.3 22.7 95 301-410 848-942 (1096)
425 PF10647 Gmad1: Lipoprotein Lp 36.9 1.8E+02 0.0039 30.4 9.0 67 323-408 25-93 (253)
426 KOG2280 Vacuolar assembly/sort 36.8 4.7E+02 0.01 31.8 12.8 47 117-164 64-113 (829)
427 PF03088 Str_synth: Strictosid 36.3 1.9E+02 0.0041 25.5 7.5 16 383-398 59-74 (89)
428 PF12341 DUF3639: Protein of u 35.7 74 0.0016 21.8 3.7 25 382-408 3-27 (27)
429 PF01011 PQQ: PQQ enzyme repea 35.5 73 0.0016 22.9 4.1 27 148-174 3-29 (38)
430 TIGR02604 Piru_Ver_Nterm putat 33.5 2E+02 0.0042 31.7 9.1 21 321-341 123-143 (367)
431 COG5422 ROM1 RhoGEF, Guanine n 33.5 2.8E+02 0.0062 34.2 10.4 36 140-175 1102-1137(1175)
432 PF01731 Arylesterase: Arylest 33.4 67 0.0015 28.1 4.2 29 383-411 56-85 (86)
433 PF04841 Vps16_N: Vps16, N-ter 33.1 2.6E+02 0.0055 31.5 10.0 29 381-410 81-109 (410)
434 PF05694 SBP56: 56kDa selenium 32.5 84 0.0018 35.7 5.8 46 116-161 221-275 (461)
435 KOG2377 Uncharacterized conser 32.4 94 0.002 35.4 6.0 86 321-421 66-152 (657)
436 smart00564 PQQ beta-propeller 32.3 1E+02 0.0022 20.8 4.3 24 147-170 8-31 (33)
437 TIGR02608 delta_60_rpt delta-6 31.2 1.1E+02 0.0025 24.4 4.8 32 383-414 3-39 (55)
438 PF11715 Nup160: Nucleoporin N 30.7 93 0.002 36.2 6.2 31 323-354 216-250 (547)
439 PF07250 Glyoxal_oxid_N: Glyox 30.2 1.5E+02 0.0032 31.1 6.9 89 302-401 47-138 (243)
440 PF12768 Rax2: Cortical protei 29.6 6.2E+02 0.013 27.1 11.6 55 300-354 15-74 (281)
441 PF03022 MRJP: Major royal jel 29.3 7.2E+02 0.016 26.5 13.9 54 301-354 34-98 (287)
442 PF07995 GSDH: Glucose / Sorbo 29.1 3.2E+02 0.007 29.7 9.7 79 313-405 245-330 (331)
443 TIGR03074 PQQ_membr_DH membran 28.0 1.2E+03 0.026 28.7 20.4 54 299-354 412-479 (764)
444 COG2133 Glucose/sorbosone dehy 26.8 1.8E+02 0.004 32.7 7.2 21 322-342 177-197 (399)
445 TIGR02604 Piru_Ver_Nterm putat 26.6 3.8E+02 0.0083 29.4 9.9 62 323-397 15-87 (367)
446 PF03088 Str_synth: Strictosid 26.5 1.6E+02 0.0034 26.0 5.4 46 296-342 32-77 (89)
447 COG3490 Uncharacterized protei 26.4 2.5E+02 0.0055 30.3 7.7 70 327-410 73-148 (366)
448 PF01436 NHL: NHL repeat; Int 26.3 1.2E+02 0.0027 20.3 3.7 25 383-407 4-28 (28)
449 KOG2444 WD40 repeat protein [G 25.5 77 0.0017 32.9 3.7 56 297-353 120-178 (238)
450 smart00036 CNH Domain found in 25.5 7.2E+02 0.016 26.6 11.5 38 19-58 14-52 (302)
451 KOG4499 Ca2+-binding protein R 24.7 2.4E+02 0.0052 29.7 7.0 47 327-390 217-263 (310)
452 PRK10115 protease 2; Provision 23.5 7E+02 0.015 30.2 12.0 98 298-410 150-255 (686)
453 PRK13684 Ycf48-like protein; P 23.4 3.9E+02 0.0085 29.1 9.1 67 321-405 172-238 (334)
454 PF03022 MRJP: Major royal jel 23.1 9.3E+02 0.02 25.6 19.3 57 117-173 34-106 (287)
455 PF10584 Proteasome_A_N: Prote 22.9 6.9 0.00015 25.7 -2.8 13 522-534 4-16 (23)
456 PLN00033 photosystem II stabil 22.5 6.6E+02 0.014 28.3 10.7 74 321-407 280-353 (398)
457 TIGR03606 non_repeat_PQQ dehyd 22.0 8.9E+02 0.019 27.9 11.7 31 322-353 30-60 (454)
458 KOG3630 Nuclear pore complex, 21.7 86 0.0019 39.4 3.7 92 300-408 123-226 (1405)
459 COG3204 Uncharacterized protei 21.7 4.4E+02 0.0094 28.6 8.4 85 319-419 83-167 (316)
460 PF14157 YmzC: YmzC-like prote 20.9 1.2E+02 0.0025 25.1 3.1 28 391-418 28-55 (63)
461 KOG4499 Ca2+-binding protein R 20.2 2.3E+02 0.0051 29.7 5.9 39 114-152 230-272 (310)
No 1
>PF12490 BCAS3: Breast carcinoma amplified sequence 3 ; InterPro: IPR022175 This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length. The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer.
Probab=100.00 E-value=2.4e-61 Score=498.51 Aligned_cols=241 Identities=46% Similarity=0.709 Sum_probs=213.2
Q ss_pred CCCeeeeEeEEEecCC-CCCCccccCccccccC-CcCCCCcceeeeeecccCCCcccccCCcccccccEEEEccCccEEE
Q 005349 457 GPPVTLSVVSRIRNGN-NGWRGTVSGAAAAATG-RVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSGCMIQ 534 (701)
Q Consensus 457 ~~~~~~s~v~~i~~~~-~~~~~~v~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~p~g~~~~ 534 (701)
|||++|++|+|||+++ +||+++|++++++++| |.+.++|++|+.||+|.+.+..+.++...++++|||||+|+|+|||
T Consensus 1 P~Pv~l~~vsrIK~~~~~g~~~tv~~aassa~g~~~~~~sga~a~~f~~~~~~~~~~~~~~~~~~~~~LlV~spsG~Liq 80 (251)
T PF12490_consen 1 PPPVTLSVVSRIKQGNTLGWLNTVSNAASSATGGKPSSVSGAFASSFHNSKGSSSEPSDSSSSKAVESLLVFSPSGHLIQ 80 (251)
T ss_pred CCCEEechHHhhcCCccccccccccccccchhcCCcccceeEEccccccCCCCcccccccccccccceEEEECCCCcEEE
Confidence 5799999999999999 8999999999999999 8899999999999999777766677776789999999999999999
Q ss_pred EeeeeccCCCccCCcCCCCCCCCCC-CCCCceEEEeeeeeeeccccCccccccc-cccccCCCCCcCC-CcccccccccC
Q 005349 535 YALRISTGLDVTMGVPGLGSAYDSV-PEDDPRLVVEAIQKWNICQKQARRERED-NIDIYGDNGTLDS-NKIYPEEVKDG 611 (701)
Q Consensus 535 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ve~~~~W~v~r~~~~~e~~~-~~~~~~~~~~~~~-~~~~~~~~~~~ 611 (701)
|+|+|+.+.+++++.++.++++++. +|+++||+|||+|||||||+++|+||++ +..++++++..+. ++|+.+..+++
T Consensus 81 y~L~p~~~~~~~~~~~~~~~~~~~~~~~~~l~l~vep~~~Wdl~R~~~w~e~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
T PF12490_consen 81 YELRPSPGSDPTEGGSGNGPPSESQMDDTELRLVVEPVQQWDLCRRPNWPEREEDCVPPLPENNPLDSASKIDPSDCRKG 160 (251)
T ss_pred EEEeeccccCcccccccccCccccccccCcceEEeeeccceeEeccccCCccchhccCCCCCCCHhhhhhhccccccccc
Confidence 9999999999988888999999888 7799999999999999999999999999 6777888764444 46777777766
Q ss_pred C-cccCCCcccccccCCCcccccceeEeeeeEeecCC-CcccccCCeeEEEEccccc-ccccccccCc--ceeEEeeecc
Q 005349 612 N-FASTEANGVIEKTKVSPEDKHHLYISEAELQMHPP-RIPLWAKPQIYFQSMMIKD-FKMGEENFLK--GEIEIERFPT 686 (701)
Q Consensus 612 ~-~~~~~~~~~~~~~~~~~~e~~~~~ls~aEv~~h~~-~~piW~~~~~~F~~~~~~~-~~~~~~~~~~--~~~~~~~~~~ 686 (701)
+ +++.+. +.+.+.+++++|++++||||||||||++ ||||||||||+||+|.+++ .+.+.++..+ |||||||||+
T Consensus 161 ~~~~~~~~-~~~~~~~~~~~e~~~~wlS~vEi~th~~phrpLW~gpQf~F~~~~~~~~~~~~~s~~~~~~~e~EIE~~~~ 239 (251)
T PF12490_consen 161 NSVNPSND-SYVSKESDSPEERDHWWLSNVEIQTHSGPHRPLWMGPQFSFKTMSSPSSSELNISSSSGEAGEIEIEKIPT 239 (251)
T ss_pred CCcccccc-ccccccCCCcccccCcEEeeeeeEeccCCccccccCCcEEEEEecCCCCccccccccccccCceeeccccc
Confidence 5 555543 4446778889999999999999999999 6999999999999999877 3445666777 9999999999
Q ss_pred eeeEeecccccc
Q 005349 687 RMIEARSKDLGS 698 (701)
Q Consensus 687 ~~~~~~~~~~~~ 698 (701)
|+||+|||||||
T Consensus 240 ~~ve~r~k~l~p 251 (251)
T PF12490_consen 240 REVEIRRKDLLP 251 (251)
T ss_pred cceeeeccccCC
Confidence 999999999998
No 2
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2e-53 Score=464.92 Aligned_cols=592 Identities=28% Similarity=0.307 Sum_probs=415.2
Q ss_pred eeEeeceeeecCCCCCCcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEe
Q 005349 2 VLWAGFDKLESEAGATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCA 81 (701)
Q Consensus 2 v~w~~fd~l~~~~~~~~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~ 81 (701)
|+|++||+ .++..+.||+++|.+||||||++++..+.+.++.+|+++.|.+|++.|+.+.. .++|+.++|++|+|.
T Consensus 41 vlw~~fD~---~~~~~~~Vlll~~~~gfqv~d~~Dsp~vh~~vs~~dd~~~f~sm~~~pl~sg~-~~gf~ss~avpavv~ 116 (788)
T KOG2109|consen 41 VLWIKFDP---KPEVLEEVLLLNREEGFQVVDETDSPTVHKEVSISDDLLDFSSMDKSPLSSGP-DSGFESSDAVPAVVR 116 (788)
T ss_pred ccccccCC---chhHHHHHHHHhhccCceEEeeccCCccceeeeecCCcceecccCCCCccCCC-CCccccCCceeeecc
Confidence 79999993 55667999999999999999999999999999999999999999999987643 556999999999998
Q ss_pred CCCCcCCccccCCcccccCCCCCCCCCCCC-CCCCCcEEEEEECCCCcEEEEEecCCCEEEEEecCCEEEEEeCCEEEEE
Q 005349 82 DGSRSCGTKVQDGLATACNGTSANYHDLGN-GSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCF 160 (701)
Q Consensus 82 ~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~-~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s~~~LaVa~~~~I~iw 160 (701)
.... +-....+ +++. ....+....++||++..++|.|+|+ +|+||
T Consensus 117 ~t~S-~p~I~~S--------------~~Gse~d~t~an~~v~dl~S~~yah~l~fR-------------------qi~Cf 162 (788)
T KOG2109|consen 117 TTTS-PPTIPPS--------------QTGSEQDSTQANEMVVDLMSLDYAHALPFR-------------------QIHCF 162 (788)
T ss_pred cccC-CCcCCCC--------------CCcceecccccccceeccccccchhccccc-------------------ccccc
Confidence 2110 0000001 0011 1123455788999999999999996 89999
Q ss_pred ECCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccc--cCCCcceee
Q 005349 161 DAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGF--ASNGSRVAH 238 (701)
Q Consensus 161 Dl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~--~s~g~~v~~ 238 (701)
|+.|++..+.+.+++.+.. +++++|+|+++++||+||+...+..+.. +..+.-.+.+++ +..+..++.
T Consensus 163 Da~tle~d~~~~~n~~p~l-----~l~VGYGplaVg~rWaaya~~~a~~vss-----~~Vt~~~~VspttSs~~~~~va~ 232 (788)
T KOG2109|consen 163 DAPTLEIDSMNTINTKPRL-----LLSVGYGPLAVGRRWAAYAQTLANQVSS-----HLVTMGMSVSPTTSSQITAEVAE 232 (788)
T ss_pred cCcccCCchhhcccccccc-----ceeeccccccceeeeeeeccCcchhhhh-----ccccccccccCCCCCchhHHHHH
Confidence 9999998888887765443 2468999999999999999765443322 111111223332 345567999
Q ss_pred hhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCe--EEEEECCCCcEEEE
Q 005349 239 YAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGM--VIVRDIVSKNVIAQ 316 (701)
Q Consensus 239 ~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~--V~IwDl~s~~~i~~ 316 (701)
||++++|++|.||.++||.+|+.+++||...++.+.+.....+...+ .|.+....+.. --|+ +.+-|+.+...+.+
T Consensus 233 ~A~essk~lA~gl~nlgDkGy~~isglc~g~~~~g~gpglgg~~~~~-vGrvg~vsaes-V~g~~~vivkdf~S~a~i~Q 310 (788)
T KOG2109|consen 233 WAQESSKELAGGLVNLGDKGYVLISGLCRGSYQIGTGPGLGGFEEVL-VGRVGPVSAES-VLGNNLVIVKDFDSFADIRQ 310 (788)
T ss_pred hhhhhhHHHhhhhcccccchHHHHHHHhhcccCCCCCCCCCCcCcee-cccccccccee-ecccceEEeecccchhhhhh
Confidence 99999999999999999999999999999987766443222222111 12222111111 1344 88899999999999
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE-eccCCcccEEEEEEcCCCCEE
Q 005349 317 FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL-QRGLTNAVIQDISFSDDSNWI 395 (701)
Q Consensus 317 ~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l-~rG~~~a~I~~iaFSpDg~~l 395 (701)
|++|+.+|++|||+++|.+|++++..|+.|++|.+++..... .... ..+.. .||.+++.|++|||+.+.+|+
T Consensus 311 fkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~-~~~~------qs~~~s~ra~t~aviqdicfs~~s~~r 383 (788)
T KOG2109|consen 311 FKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTV-NVSD------QSLVVSPRANTAAVIQDICFSEVSTIR 383 (788)
T ss_pred eeeecCcccccccccCceEEEEEeeccceeeeEEeccccccc-cccc------cccccchhcchHHHHHHHhhhhhcceE
Confidence 999999999999999999999999999999999998752110 0000 11111 488999999999999999999
Q ss_pred EEEeCCCcEEEEecCCCCCceeecCCCCCcccccCCCcccccccCCCCCCCCCCccccccCCCCeeeeEeEEEecCCCCC
Q 005349 396 MISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGW 475 (701)
Q Consensus 396 AsgS~dgTI~Iwdl~~~g~~~~~~~H~~~~~~~~~~~~~~~~~~~~~s~~~~~~q~~l~~~~~~~~~s~v~~i~~~~~~~ 475 (701)
+.+|.+|+- +.+. .+...+|+..+.+.. .-++. +.+....+...+++.--+.-
T Consensus 384 ~~gsc~Ge~-----------P~ls-------------~t~~lp~~A~~Sl~~-gl~s~-g~~aa~gla~~sag~~a~s~- 436 (788)
T KOG2109|consen 384 TAGSCEGEP-----------PALS-------------LTCQLPAYADTSLDL-GLQSS-GGLAAEGLATSSAGYTAHSY- 436 (788)
T ss_pred eecccCCCC-----------cccc-------------cccccchhhchhhhc-ccccc-Ccccceeeeecccccccccc-
Confidence 999966653 1111 111112332222221 11111 11223335555555443310
Q ss_pred CccccCccccccCCcCCCCcceeeeeecccCCCcccccCCcccccccEEEEccCc-cEEEEeeeeccCCCccCC-cCCCC
Q 005349 476 RGTVSGAAAAATGRVSSLSGAIASSFHNCKGNSETYAAGSSLKIKNHLLVFSPSG-CMIQYALRISTGLDVTMG-VPGLG 553 (701)
Q Consensus 476 ~~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~p~g-~~~~~~l~~~~~~~~~~~-~~~~~ 553 (701)
++++-.++.-.++++.+..||-...-. .......+..|+|+.|+| +++||.|.++-+....+. ...++
T Consensus 437 ------~asSv~s~s~~pd~ks~gv~~gsv~k~----~q~~~~~l~~llv~~psGd~vvqh~vahs~~gv~~Ef~~~~~l 506 (788)
T KOG2109|consen 437 ------TASSVFSRSVKPDSKSVGVGSGSVTKA----NQGVITVLNLLLVGEPSGDGVVQHYVAHSDPGVYIEFSPDQRL 506 (788)
T ss_pred ------ccceeeccccccchhhccceeeecccc----CccchhhhhheeeecCCCCceeEEEeeccCccceeeecccccc
Confidence 122223333344444444444331110 012245799999999999 999999999988777664 34455
Q ss_pred CCCCCCCCCC-ceEEEeeeeeeeccccCccccccccccccCCCCCcCCCcccccccccCCcccCCCcccccccCCCcccc
Q 005349 554 SAYDSVPEDD-PRLVVEAIQKWNICQKQARREREDNIDIYGDNGTLDSNKIYPEEVKDGNFASTEANGVIEKTKVSPEDK 632 (701)
Q Consensus 554 ~~~~~~~~~~-~~~~ve~~~~W~v~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 632 (701)
.-.+...+++ .+|.|+|++.|++|++..|+||+++ |.. +-|.+...++++.....++ .+...+.-++
T Consensus 507 ~lSad~~e~ef~~f~V~Ph~~wsslaav~hly~l~r----G~T----saKv~~~afs~dsrw~A~~----t~~~TthVfk 574 (788)
T KOG2109|consen 507 VLSADANENEFNIFLVMPHATWSSLAAVQHLYKLNR----GST----SAKVVSTAFSEDSRWLAIT----TNHATTHVFK 574 (788)
T ss_pred eecccccccccceEEeecccccHHHhhhhhhhhccC----CCc----cceeeeeEeecchhhhhhh----hcCCceeeee
Confidence 5556667888 9999999999999999999999996 221 2255666666543221211 3445556789
Q ss_pred cceeEeeeeEeecCCCcccccCCeeEEEEccccccccccccc--CcceeEEeeecceeeEeeccccccccC
Q 005349 633 HHLYISEAELQMHPPRIPLWAKPQIYFQSMMIKDFKMGEENF--LKGEIEIERFPTRMIEARSKDLGSYCR 701 (701)
Q Consensus 633 ~~~~ls~aEv~~h~~~~piW~~~~~~F~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (701)
+|.|+-++|++||.. +|||+|.+ .||.|...+-+.|.++. .++|.||+++.++++|+|+|||+||+.
T Consensus 575 ~hpYgg~aeqrth~~-lp~vnk~s-rFhrsagl~~d~~~~~s~ggg~e~ei~~~~~~t~e~r~~dllPvy~ 643 (788)
T KOG2109|consen 575 VHPYGGKAEQRTHGD-LPFVNKES-RFHRSAGLTDDADVTASIGGGKEREIADSCSYTKEHRIADLLPVYA 643 (788)
T ss_pred eccccccccceecCC-chhccchh-hhccccCCCccccccccCCCCccceecccccccccccccccCCccc
Confidence 999999999999999 99999999 99999998777666664 445999999999999999999999974
No 3
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=3.9e-33 Score=289.83 Aligned_cols=230 Identities=27% Similarity=0.492 Sum_probs=200.9
Q ss_pred CCcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 17 ~~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
...+|.+|..+|+++|.+++.++ ..+...+.+.+++||- +..|||+++.+
T Consensus 16 d~~~lsvGs~~Gyk~~~~~~~~k---~~~~~~~~~~IvEmLF--------------SSSLvaiV~~~------------- 65 (391)
T KOG2110|consen 16 DSTLLSVGSKDGYKIFSCSPFEK---CFSKDTEGVSIVEMLF--------------SSSLVAIVSIK------------- 65 (391)
T ss_pred ceeEEEccCCCceeEEecCchHH---hhcccCCCeEEEEeec--------------ccceeEEEecC-------------
Confidence 47889999999999999998543 5555678899999984 34699999852
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEecCCEEEEEeCCEEEEEECCCCceeEEEecC-C
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTN-P 175 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s~~~LaVa~~~~I~iwDl~t~~~~~tl~t~-~ 175 (701)
.++.+++++++.+..++.+.|+++|.+|++|+++|+|++.++|+|||+.+|+.++++++. +
T Consensus 66 ------------------qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~ 127 (391)
T KOG2110|consen 66 ------------------QPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPP 127 (391)
T ss_pred ------------------CCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCC
Confidence 127899999999999999999999999999999999999999999999999999999987 4
Q ss_pred CccCCCCCCCCCcccceeeecc----ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhcee
Q 005349 176 IVMGHPSAGGIGIGYGPLAVGP----RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (701)
Q Consensus 176 ~~~~~~~~~~~~~~~~piAls~----r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl 251 (701)
++.+. +|+++ .+|||+++
T Consensus 128 n~~gl------------~AlS~n~~n~ylAyp~s---------------------------------------------- 149 (391)
T KOG2110|consen 128 NPKGL------------CALSPNNANCYLAYPGS---------------------------------------------- 149 (391)
T ss_pred Cccce------------EeeccCCCCceEEecCC----------------------------------------------
Confidence 54432 44443 46777520
Q ss_pred EEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC
Q 005349 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (701)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP 331 (701)
...|.|.|||+.+-+++..+.+|.++|.||+|||
T Consensus 150 ----------------------------------------------~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~ 183 (391)
T KOG2110|consen 150 ----------------------------------------------TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP 183 (391)
T ss_pred ----------------------------------------------CCCceEEEEEcccceeeeEEEecCCceeEEEECC
Confidence 1247899999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 332 dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
||++|||||++||+||||.+..+ .++|+||||.....|++|+|+||+++|+++|+.+|||||.|+.
T Consensus 184 ~G~llATASeKGTVIRVf~v~~G--------------~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 184 DGTLLATASEKGTVIRVFSVPEG--------------QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CCCEEEEeccCceEEEEEEcCCc--------------cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 99999999999999999999888 8999999999988899999999999999999999999999976
Q ss_pred C
Q 005349 412 L 412 (701)
Q Consensus 412 ~ 412 (701)
.
T Consensus 250 ~ 250 (391)
T KOG2110|consen 250 V 250 (391)
T ss_pred c
Confidence 4
No 4
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.98 E-value=1.1e-30 Score=267.37 Aligned_cols=238 Identities=25% Similarity=0.382 Sum_probs=197.5
Q ss_pred CCcEEEEeccCCeEEEEecCCCCeeEEee--eccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 17 ~~~vL~~g~~~g~qVwdv~~~~~~~elvs--~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
...++++|.++||+||++++. .|..+ .+++.+..++||- ..++||+++++.
T Consensus 16 D~ScFava~~~Gfriyn~~P~---ke~~~r~~~~~G~~~veMLf--------------R~N~laLVGGg~---------- 68 (346)
T KOG2111|consen 16 DHSCFAVATDTGFRIYNCDPF---KESASRQFIDGGFKIVEMLF--------------RSNYLALVGGGS---------- 68 (346)
T ss_pred CCceEEEEecCceEEEecCch---hhhhhhccccCchhhhhHhh--------------hhceEEEecCCC----------
Confidence 378999999999999999984 44443 2466689999983 347899998642
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEecCCEEEEEeCCEEEEEECC-CCceeEEEec
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAA-TLEIEYAILT 173 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s~~~LaVa~~~~I~iwDl~-t~~~~~tl~t 173 (701)
++.|.+++|.|||-...+++.+|.|.++|.+|++.++.|+|+++++|+||... +.+.++.++|
T Consensus 69 ----------------~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 69 ----------------RPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred ----------------CCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeec
Confidence 14567899999999999999999999999999999999999999999999998 6788999999
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEE
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~ 253 (701)
.+||.|++ ++.| . . .|.
T Consensus 133 ~~NPkGlC------------~~~~--------------------~-~-----------------------~k~------- 149 (346)
T KOG2111|consen 133 RSNPKGLC------------SLCP--------------------T-S-----------------------NKS------- 149 (346)
T ss_pred ccCCCceE------------eecC--------------------C-C-----------------------Cce-------
Confidence 88766542 2111 0 0 000
Q ss_pred cCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcE--EEEeecCCCCeEEEEEcC
Q 005349 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDP 331 (701)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~--i~~~~~H~~~Is~laFSP 331 (701)
..++|+. ..|.|+|-|+...+. ...++||.+.|.||+.+-
T Consensus 150 ------------------------~LafPg~--------------k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~ 191 (346)
T KOG2111|consen 150 ------------------------LLAFPGF--------------KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL 191 (346)
T ss_pred ------------------------EEEcCCC--------------ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC
Confidence 0133332 247899999887654 478899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 332 dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
+|++|||||.+||.|||||..++ ..+++|+||...|.|++|+||||+.|||++|+.||+|||.+..
T Consensus 192 ~Gt~vATaStkGTLIRIFdt~~g--------------~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 192 QGTLVATASTKGTLIRIFDTEDG--------------TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEeccCcEEEEEEEcCCC--------------cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999999988 7999999999999999999999999999999999999999976
Q ss_pred C
Q 005349 412 L 412 (701)
Q Consensus 412 ~ 412 (701)
.
T Consensus 258 ~ 258 (346)
T KOG2111|consen 258 T 258 (346)
T ss_pred C
Confidence 3
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.2e-23 Score=219.58 Aligned_cols=283 Identities=16% Similarity=0.260 Sum_probs=204.8
Q ss_pred CCCcEEEEeccCC-eEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 16 ATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 16 ~~~~vL~~g~~~g-~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
+..+.|+.|..+| +.+||-...+..-.-+.+|...|.++.+.|....+ ..| +||-++
T Consensus 167 PDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p--------~~r-~las~s------------- 224 (480)
T KOG0271|consen 167 PDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP--------PCR-RLASSS------------- 224 (480)
T ss_pred CCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCC--------Ccc-ceeccc-------------
Confidence 4466677766554 99999887667777788899999999988743221 112 333222
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecC-CEEEE-EeCCEEEEEECCCCceeEEE
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS-RVVAI-CQAAQVHCFDAATLEIEYAI 171 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~-~~LaV-a~~~~I~iwDl~t~~~~~tl 171 (701)
.+++|+|||+..++++.++.. ..+|.+|++.+ .++.. +.|++|++|++..+.+.+++
T Consensus 225 --------------------kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~l 284 (480)
T KOG0271|consen 225 --------------------KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCREL 284 (480)
T ss_pred --------------------CCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhh
Confidence 237899999999999999975 56999999984 56665 67999999999999999999
Q ss_pred ecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhcee
Q 005349 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (701)
Q Consensus 172 ~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl 251 (701)
.+|. ..+|.++++..|.--.+ ..-++|+..++
T Consensus 285 kGHa------------hwvN~lalsTdy~LRtg---af~~t~~~~~~--------------------------------- 316 (480)
T KOG0271|consen 285 KGHA------------HWVNHLALSTDYVLRTG---AFDHTGRKPKS--------------------------------- 316 (480)
T ss_pred cccc------------hheeeeeccchhhhhcc---ccccccccCCC---------------------------------
Confidence 8873 35677887753321110 00012221000
Q ss_pred EEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECC-CCcEEEEeecCCCCeEEEEEc
Q 005349 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-SKNVIAQFRAHKSPISALCFD 330 (701)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~-s~~~i~~~~~H~~~Is~laFS 330 (701)
+.|...+.+++|-.. ++++ | -.++++.+|+++.+|+-. +.+++..+.+|..-|+.+.||
T Consensus 317 --~se~~~~Al~rY~~~-~~~~--------------~---erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS 376 (480)
T KOG0271|consen 317 --FSEEQKKALERYEAV-LKDS--------------G---ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS 376 (480)
T ss_pred --hHHHHHHHHHHHHHh-hccC--------------c---ceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC
Confidence 001111234444321 1111 1 135677889999999954 566899999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 331 PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 331 PdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
|||+++|+||.|.. |++||-.+| +.+..| |||- +.|+.|+||.|++.|++||.|.|++||++.
T Consensus 377 Pd~r~IASaSFDkS-VkLW~g~tG--------------k~lasf-RGHv-~~VYqvawsaDsRLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 377 PDGRYIASASFDKS-VKLWDGRTG--------------KFLASF-RGHV-AAVYQVAWSADSRLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred CCccEEEEeecccc-eeeeeCCCc--------------chhhhh-hhcc-ceeEEEEeccCccEEEEcCCCceEEEEEee
Confidence 99999999999975 999999998 566666 7875 459999999999999999999999999999
Q ss_pred CCCCceeecCCCCCc
Q 005349 411 PLGGSVNFQPTDANF 425 (701)
Q Consensus 411 ~~g~~~~~~~H~~~~ 425 (701)
+.+-...+-+|.+.+
T Consensus 440 tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 440 TKKLKQDLPGHADEV 454 (480)
T ss_pred eeeecccCCCCCceE
Confidence 887777777886554
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.89 E-value=3.4e-21 Score=192.11 Aligned_cols=273 Identities=19% Similarity=0.280 Sum_probs=187.6
Q ss_pred EEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccC
Q 005349 21 LLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACN 100 (701)
Q Consensus 21 L~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~ 100 (701)
...||+..+++|...+ |.+...+...|+.|..+++.|+. ..||..+.
T Consensus 14 vsA~YDhTIRfWqa~t-G~C~rTiqh~dsqVNrLeiTpdk--------------~~LAaa~~------------------ 60 (311)
T KOG0315|consen 14 VSAGYDHTIRFWQALT-GICSRTIQHPDSQVNRLEITPDK--------------KDLAAAGN------------------ 60 (311)
T ss_pred EeccCcceeeeeehhc-CeEEEEEecCccceeeEEEcCCc--------------chhhhccC------------------
Confidence 3449999999999987 78888898889999999998742 13443321
Q ss_pred CCCCCCCCCCCCCCCCcEEEEEECCCCc--EEEEEecC-CCEEEEEe--cCCEEEE-EeCCEEEEEECCCCceeEEEecC
Q 005349 101 GTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLKFR-SPIYSVRC--SSRVVAI-CQAAQVHCFDAATLEIEYAILTN 174 (701)
Q Consensus 101 g~~~~~~~~~~~~~~~~tVriWdl~tg~--~v~tL~f~-s~V~sV~~--s~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~ 174 (701)
-.||+||+.+++ .+.+++.+ ..|.+|.| .++.+.. +.|++++|||++...+.+.+.-
T Consensus 61 ----------------qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~- 123 (311)
T KOG0315|consen 61 ----------------QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH- 123 (311)
T ss_pred ----------------CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-
Confidence 349999999986 58888765 68889988 4788777 6789999999999776554432
Q ss_pred CCccCCCCCCCCCcccceeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeE
Q 005349 175 PIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (701)
Q Consensus 175 ~~~~~~~~~~~~~~~~~piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~ 252 (701)
+. .++.+.+.| .-|-... .+ |-.
T Consensus 124 ~s------------pVn~vvlhpnQteLis~d--------------------------qs-----------------g~i 148 (311)
T KOG0315|consen 124 NS------------PVNTVVLHPNQTELISGD--------------------------QS-----------------GNI 148 (311)
T ss_pred CC------------CcceEEecCCcceEEeec--------------------------CC-----------------CcE
Confidence 11 123344333 0111110 00 111
Q ss_pred EcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC------cEEEEeecCCCCeEE
Q 005349 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK------NVIAQFRAHKSPISA 326 (701)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~------~~i~~~~~H~~~Is~ 326 (701)
...|.+... +.-.+.|+...++++..-.+ +| ..++.+.+.|...+|++-+. .++..|++|+..|..
T Consensus 149 rvWDl~~~~---c~~~liPe~~~~i~sl~v~~--dg---sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~ 220 (311)
T KOG0315|consen 149 RVWDLGENS---CTHELIPEDDTSIQSLTVMP--DG---SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR 220 (311)
T ss_pred EEEEccCCc---cccccCCCCCcceeeEEEcC--CC---cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEE
Confidence 222222111 11224555544444332111 11 13455678899999998764 477889999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 005349 327 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 406 (701)
Q Consensus 327 laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~I 406 (701)
+-||||+++|||+|.|.+ ++||++... ...-..+ .|+ ...+++++||.||+||++++.|+++|+
T Consensus 221 C~lSPd~k~lat~ssdkt-v~iwn~~~~-------------~kle~~l-~gh-~rWvWdc~FS~dg~YlvTassd~~~rl 284 (311)
T KOG0315|consen 221 CLLSPDVKYLATCSSDKT-VKIWNTDDF-------------FKLELVL-TGH-QRWVWDCAFSADGEYLVTASSDHTARL 284 (311)
T ss_pred EEECCCCcEEEeecCCce-EEEEecCCc-------------eeeEEEe-ecC-CceEEeeeeccCccEEEecCCCCceee
Confidence 999999999999999987 899998754 0111222 233 235999999999999999999999999
Q ss_pred EecCCCCCceeecCCC
Q 005349 407 FAINPLGGSVNFQPTD 422 (701)
Q Consensus 407 wdl~~~g~~~~~~~H~ 422 (701)
|++...+......+|.
T Consensus 285 W~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 285 WDLSAGKEVRQYQGHH 300 (311)
T ss_pred cccccCceeeecCCcc
Confidence 9999877777778874
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.89 E-value=4.2e-22 Score=223.78 Aligned_cols=179 Identities=20% Similarity=0.306 Sum_probs=140.5
Q ss_pred CcEEEEEECCCCcEEEEEec-CCCEEEEEecC--CEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccc
Q 005349 116 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 191 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~--~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~ 191 (701)
+.+||+|+|+|..++...+. ..||+.|+|++ -++|. +.|++-++|.......++.+.+|-... +
T Consensus 472 D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV------------~ 539 (707)
T KOG0263|consen 472 DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDV------------D 539 (707)
T ss_pred CcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccccccc------------c
Confidence 37899999999999998885 46999999985 46666 678899999877765555554442111 1
Q ss_pred eeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccC
Q 005349 192 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (701)
Q Consensus 192 piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p 271 (701)
++ +|. +-+.
T Consensus 540 cv-------~FH---------------------------------------------------------PNs~------- 548 (707)
T KOG0263|consen 540 CV-------SFH---------------------------------------------------------PNSN------- 548 (707)
T ss_pred eE-------EEC---------------------------------------------------------Cccc-------
Confidence 11 121 0011
Q ss_pred CCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 005349 272 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 351 (701)
Q Consensus 272 ~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl 351 (701)
.+++++.|.+|++||+.+|..++.|.+|+++|.+|+|||+|++||+|+.||. |+|||+
T Consensus 549 ---------------------Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl 606 (707)
T KOG0263|consen 549 ---------------------YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDL 606 (707)
T ss_pred ---------------------ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEc
Confidence 1234567899999999999999999999999999999999999999999997 999999
Q ss_pred CCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCc
Q 005349 352 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 352 ~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
..+ ..+..+ +|| ...|.+|.||.||..||+|+.|.+|++||+....+.
T Consensus 607 ~~~--------------~~v~~l-~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 607 ANG--------------SLVKQL-KGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCC--------------cchhhh-hcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 886 444444 677 456999999999999999999999999999765443
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=1e-21 Score=207.54 Aligned_cols=242 Identities=13% Similarity=0.189 Sum_probs=189.1
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
..+...+.++..+||.++.- +....+..|.+.|.++.|-|.- +-.-||.|.
T Consensus 188 ~~laT~swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~------------~~~~lat~s---------------- 238 (459)
T KOG0272|consen 188 KHLATGSWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVD------------SDLNLATAS---------------- 238 (459)
T ss_pred CeEEEeecCCceeEeecCCc-ceeEEEeccccceeeEEEccCC------------Cccceeeec----------------
Confidence 45555566777999999984 6677777899999999998731 001133222
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEec
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t 173 (701)
.+++|++|++.+.+.+..|.. ...|..|+|. +++|+. ++|.+=++||++|...+...++
T Consensus 239 -----------------~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEG 301 (459)
T KOG0272|consen 239 -----------------ADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEG 301 (459)
T ss_pred -----------------cCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcc
Confidence 338899999999999999985 5799999995 788887 7899999999999988877777
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEE
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~ 253 (701)
|+.. + + -+||-. +|++
T Consensus 302 Hs~~------------v--~-----~iaf~~---------------------------DGSL------------------ 317 (459)
T KOG0272|consen 302 HSKG------------V--F-----SIAFQP---------------------------DGSL------------------ 317 (459)
T ss_pred cccc------------c--c-----eeEecC---------------------------CCce------------------
Confidence 7421 1 1 123321 1221
Q ss_pred cCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCC
Q 005349 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (701)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG 333 (701)
.++++-|..-+|||+++++++..|.+|..+|..|+|||+|
T Consensus 318 ----------------------------------------~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG 357 (459)
T KOG0272|consen 318 ----------------------------------------AATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG 357 (459)
T ss_pred ----------------------------------------eeccCccchhheeecccCcEEEEecccccceeeEeECCCc
Confidence 1234556778999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCC
Q 005349 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 334 ~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
..|||||.|++ ++|||++.. ..+|.+. +|. ..|..++|+| .|++|+++|-|+|++||.-...
T Consensus 358 y~lATgs~Dnt-~kVWDLR~r--------------~~ly~ip-AH~-nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 358 YHLATGSSDNT-CKVWDLRMR--------------SELYTIP-AHS-NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW 420 (459)
T ss_pred eEEeecCCCCc-EEEeeeccc--------------ccceecc-ccc-chhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence 99999999987 899999875 5577773 443 3599999999 8999999999999999999888
Q ss_pred CCceeecCCCCCcc
Q 005349 413 GGSVNFQPTDANFT 426 (701)
Q Consensus 413 g~~~~~~~H~~~~~ 426 (701)
....++.+|.+.+.
T Consensus 421 ~~~ksLaGHe~kV~ 434 (459)
T KOG0272|consen 421 SPLKSLAGHEGKVI 434 (459)
T ss_pred ccchhhcCCccceE
Confidence 77788899976544
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=5.9e-21 Score=199.47 Aligned_cols=230 Identities=18% Similarity=0.213 Sum_probs=159.0
Q ss_pred cEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCcee-EEEecCCCccCCCCCCCCCcccc
Q 005349 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIE-YAILTNPIVMGHPSAGGIGIGYG 191 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~-~tl~t~~~~~~~~~~~~~~~~~~ 191 (701)
+||||||+.|....++.+- ...|.+|+++ ++.||. +.+++|++||..+++++ .+|..|.. .+ .++.+.
T Consensus 137 ~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K--~I-----t~Lawe 209 (480)
T KOG0271|consen 137 TTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKK--WI-----TALAWE 209 (480)
T ss_pred ceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCccc--ce-----eEEeec
Confidence 8999999999999999985 7899999998 467777 78999999999998753 55655532 11 123444
Q ss_pred eeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccc
Q 005349 192 PLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 269 (701)
Q Consensus 192 piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~ 269 (701)
|+-+.| |.||.++++ ..|..|..-..+.+. ...|+.
T Consensus 210 p~hl~p~~r~las~skD---------------------------g~vrIWd~~~~~~~~---~lsgHT------------ 247 (480)
T KOG0271|consen 210 PLHLVPPCRRLASSSKD---------------------------GSVRIWDTKLGTCVR---TLSGHT------------ 247 (480)
T ss_pred ccccCCCccceecccCC---------------------------CCEEEEEccCceEEE---EeccCc------------
Confidence 444433 666655432 222222111111000 000110
Q ss_pred cCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEc-----------CCCC----
Q 005349 270 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD-----------PSGI---- 334 (701)
Q Consensus 270 ~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFS-----------PdG~---- 334 (701)
.++.-...+ | -+.+.+++.|++|++|+...|+++..|++|.+.|+.|+.| |.|.
T Consensus 248 -----~~VTCvrwG----G--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 248 -----ASVTCVRWG----G--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred -----cceEEEEEc----C--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 000000111 1 1355678899999999999999999999999999999877 4444
Q ss_pred ---------------------EEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCC
Q 005349 335 ---------------------LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN 393 (701)
Q Consensus 335 ---------------------lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~ 393 (701)
.|++||+|++ +.+|+-... ...+.++ .|| .+.|..+.||||++
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~t-lflW~p~~~-------------kkpi~rm-tgH-q~lVn~V~fSPd~r 380 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFT-LFLWNPFKS-------------KKPITRM-TGH-QALVNHVSFSPDGR 380 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCce-EEEeccccc-------------ccchhhh-hch-hhheeeEEECCCcc
Confidence 4999999998 789986543 1233333 343 45699999999999
Q ss_pred EEEEEeCCCcEEEEecCCCCCceeecCCC
Q 005349 394 WIMISSSRGTSHLFAINPLGGSVNFQPTD 422 (701)
Q Consensus 394 ~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~ 422 (701)
|+|++|-|..|++|+-.++.-..+|++|-
T Consensus 381 ~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 381 YIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred EEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 99999999999999999987778999984
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.85 E-value=5.7e-19 Score=190.79 Aligned_cols=333 Identities=13% Similarity=0.216 Sum_probs=212.6
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEee--eccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs--~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~ 95 (701)
.++...|.++.+.+||=.+...+.++-+ .|.|.|..+.++|+.. .++.++.
T Consensus 203 ~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~--------------~~~T~Sa------------- 255 (603)
T KOG0318|consen 203 SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST--------------QFLTVSA------------- 255 (603)
T ss_pred CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc--------------eEEEecC-------------
Confidence 6788889999999999887555555553 6899999999998642 2333332
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEE-----ecCCEEEEEeCCEEEEEECCCCceeEE
Q 005349 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVR-----CSSRVVAICQAAQVHCFDAATLEIEYA 170 (701)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~-----~s~~~LaVa~~~~I~iwDl~t~~~~~t 170 (701)
++++||||..+++++.++.+.+.|.... -+.+++.|++++.|..++...+..+++
T Consensus 256 --------------------Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~ 315 (603)
T KOG0318|consen 256 --------------------DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKV 315 (603)
T ss_pred --------------------CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhe
Confidence 2889999999999999999866544333 256788889999999999999998888
Q ss_pred EecCCCccCCCCCCCCCcccceeeecc--ceEEEcCCC--ceecCCCccCCcccccccccccccCCCcceeehhhhchhc
Q 005349 171 ILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (701)
Q Consensus 171 l~t~~~~~~~~~~~~~~~~~~piAls~--r~LAya~~~--~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~ 246 (701)
+.+|.. +..++++++ .+|-.++.+ +..|..|.-....+.+ ...+..+..++...+.+
T Consensus 316 i~GHnK------------~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g-------~~h~nqI~~~~~~~~~~ 376 (603)
T KOG0318|consen 316 ISGHNK------------SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG-------KGHTNQIKGMAASESGE 376 (603)
T ss_pred eccccc------------ceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc-------ccccceEEEEeecCCCc
Confidence 888742 234566666 455444433 2334333311111110 01222233333222222
Q ss_pred hhc-e----eEE--cCCccceec-----cccc--ccccCCCC--------------------------Cccccc-cCCCC
Q 005349 247 LAA-G----IVN--LGDLGYKKL-----SQYC--SEFLPDSQ--------------------------NSLQSA-IPGGK 285 (701)
Q Consensus 247 la~-g----l~~--lGd~g~~~l-----s~y~--~~~~p~~~--------------------------~s~~~a-~~~~~ 285 (701)
+.+ | ++. +.+.+|.+- ...- -...+++. .+...+ +++
T Consensus 377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~-- 454 (603)
T KOG0318|consen 377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD-- 454 (603)
T ss_pred EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC--
Confidence 221 1 110 111111100 0000 00000100 000001 111
Q ss_pred CCCcccccccccCCCCeEEEEECCCCc--EEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccC
Q 005349 286 SNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACD 363 (701)
Q Consensus 286 ~~g~~~~~~~~~~~dG~V~IwDl~s~~--~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~ 363 (701)
...++.+.+||+|+||.+.... ....+..|..+|++++|||||++||+|+..+. +.+||+.+.
T Consensus 455 -----~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk-vv~yd~~s~--------- 519 (603)
T KOG0318|consen 455 -----GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK-VVLYDVASR--------- 519 (603)
T ss_pred -----CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc-EEEEEcccC---------
Confidence 1234567899999999998754 34566799999999999999999999999987 899999876
Q ss_pred CCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeec-CCCCCcccccCCCcccccccCCC
Q 005349 364 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ-PTDANFTTKHGAMAKSGVRWPPN 442 (701)
Q Consensus 364 ~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~-~H~~~~~~~~~~~~~~~~~~~~~ 442 (701)
....-+.+++.++|.+++||||+++||+||.|.+|+||.++.....+.++ +| ++. .
T Consensus 520 ------~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH----------------~~g-V 576 (603)
T KOG0318|consen 520 ------EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH----------------LGG-V 576 (603)
T ss_pred ------ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccc----------------ccC-c
Confidence 11333456677899999999999999999999999999999887776664 55 222 4
Q ss_pred CCCCCCCccccccC
Q 005349 443 LGLQMPNQQSLCAS 456 (701)
Q Consensus 443 s~~~~~~q~~l~~~ 456 (701)
+.+.|++++++.-+
T Consensus 577 n~v~wlde~tvvSs 590 (603)
T KOG0318|consen 577 NSVAWLDESTVVSS 590 (603)
T ss_pred eeEEEecCceEEec
Confidence 45567777666433
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=1.8e-20 Score=198.05 Aligned_cols=222 Identities=19% Similarity=0.240 Sum_probs=170.6
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
..+...++++.+++|+++....+.++ ..|...|.-++|=|.+. .|+..+
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHPsG~--------------~L~Tas---------------- 280 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHPSGK--------------FLGTAS---------------- 280 (459)
T ss_pred cceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeecCCCc--------------eeeecc----------------
Confidence 45566677777899998864333333 34677777777766432 222111
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEec
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t 173 (701)
.+.+-|+||++|++.+...+. ...|++|+|. +.+++. ++|..-+|||++|++++..|.+
T Consensus 281 -----------------fD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g 343 (459)
T KOG0272|consen 281 -----------------FDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG 343 (459)
T ss_pred -----------------cccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc
Confidence 347789999999998887775 5599999996 567766 6788999999999999999988
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEE
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~ 253 (701)
|..+. ++ ++|++ +|.
T Consensus 344 H~k~I--------------~~-----V~fsP---------------------------NGy------------------- 358 (459)
T KOG0272|consen 344 HIKEI--------------LS-----VAFSP---------------------------NGY------------------- 358 (459)
T ss_pred cccce--------------ee-----EeECC---------------------------Cce-------------------
Confidence 74210 11 12220 010
Q ss_pred cCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC-C
Q 005349 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-S 332 (701)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP-d 332 (701)
++++++.|++++|||++..+++.++.+|++-|+.|+|+| .
T Consensus 359 ---------------------------------------~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 359 ---------------------------------------HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred ---------------------------------------EEeecCCCCcEEEeeecccccceecccccchhhheEecccC
Confidence 345577899999999999999999999999999999999 7
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005349 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 333 G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwd 408 (701)
|.+|+|||.|++ ++||...+. .++..| -||. .+|.++..|+||+++++++-|+|+++|.
T Consensus 400 g~fL~TasyD~t-~kiWs~~~~--------------~~~ksL-aGHe-~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 400 GYFLVTASYDNT-VKIWSTRTW--------------SPLKSL-AGHE-GKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CeEEEEcccCcc-eeeecCCCc--------------ccchhh-cCCc-cceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999987 899998876 566666 3665 4699999999999999999999999995
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=1.5e-18 Score=193.70 Aligned_cols=185 Identities=19% Similarity=0.295 Sum_probs=140.2
Q ss_pred cEEEEEECCCCcEEEEEe-cCCCEEEEEec--CCEEE-EEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~-f~s~V~sV~~s--~~~La-Va~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
++||+||..+|-|..|+. +.+.|.+|.|. ++.|. .++|++|+.||+..+++.+|+.. |.+ +.++.
T Consensus 372 gKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p----------~Qfsc 440 (893)
T KOG0291|consen 372 GKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEP----------IQFSC 440 (893)
T ss_pred CcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCc----------eeeeE
Confidence 789999999999999995 67899999995 55554 48999999999999998888743 332 12233
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
+|+.| .|.+|
T Consensus 441 vavD~----------------------------------sGelV------------------------------------ 450 (893)
T KOG0291|consen 441 VAVDP----------------------------------SGELV------------------------------------ 450 (893)
T ss_pred EEEcC----------------------------------CCCEE------------------------------------
Confidence 33211 01111
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~ 352 (701)
++.+.+.=.|.||++++|+.+..+.+|.+||.+|+|+|+|.+|||+|.|.| ||+||+.
T Consensus 451 ---------------------~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if 508 (893)
T KOG0291|consen 451 ---------------------CAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIF 508 (893)
T ss_pred ---------------------EeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEee
Confidence 000112246999999999999999999999999999999999999999987 9999997
Q ss_pred CCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecC
Q 005349 353 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (701)
Q Consensus 353 ~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~ 420 (701)
.. .+.+ -+++ ....+..++|+|||+-||+++.||.|.+||++......++.+
T Consensus 509 ~s----------~~~v---Etl~---i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 509 SS----------SGTV---ETLE---IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred cc----------Ccee---eeEe---eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence 53 1112 2232 124589999999999999999999999999987655545543
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.82 E-value=5.5e-18 Score=172.60 Aligned_cols=244 Identities=14% Similarity=0.192 Sum_probs=177.8
Q ss_pred CCcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 17 ~~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
.|+++....++-+-|||.-+.+++ ..+.-+..=|-.+++.|.. .++| |++
T Consensus 67 sr~ivSaSqDGklIvWDs~TtnK~-haipl~s~WVMtCA~sPSg--------------~~VA-cGG-------------- 116 (343)
T KOG0286|consen 67 SRRIVSASQDGKLIVWDSFTTNKV-HAIPLPSSWVMTCAYSPSG--------------NFVA-CGG-------------- 116 (343)
T ss_pred cCeEEeeccCCeEEEEEcccccce-eEEecCceeEEEEEECCCC--------------CeEE-ecC--------------
Confidence 366666666666999999875443 3444455557777777643 2333 332
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCC------cEEEEEe-cCCCEEEEEe--cCCEEEEEeCCEEEEEECCCCce
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQ------SYVHMLK-FRSPIYSVRC--SSRVVAICQAAQVHCFDAATLEI 167 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg------~~v~tL~-f~s~V~sV~~--s~~~LaVa~~~~I~iwDl~t~~~ 167 (701)
.++..-||++.+. +..++|. +.+-+.+.+| +.++|..+.|.+..+||+++++.
T Consensus 117 ------------------LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~ 178 (343)
T KOG0286|consen 117 ------------------LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQ 178 (343)
T ss_pred ------------------cCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceE
Confidence 2266788999866 2333443 3456777777 36777778999999999999999
Q ss_pred eEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhch
Q 005349 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (701)
Q Consensus 168 ~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~l 247 (701)
...+.+|.. -.++| +.+ |. +
T Consensus 179 ~~~f~GH~g--------------DV~sl-----sl~-------------p~-------------~--------------- 198 (343)
T KOG0286|consen 179 TQVFHGHTG--------------DVMSL-----SLS-------------PS-------------D--------------- 198 (343)
T ss_pred EEEecCCcc--------------cEEEE-----ecC-------------CC-------------C---------------
Confidence 888877631 11222 111 00 0
Q ss_pred hceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEE
Q 005349 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISAL 327 (701)
Q Consensus 248 a~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~l 327 (701)
..+|+++.-|+..+|||++++.+++.|.+|.+.|++|
T Consensus 199 -------------------------------------------~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv 235 (343)
T KOG0286|consen 199 -------------------------------------------GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSV 235 (343)
T ss_pred -------------------------------------------CCeEEecccccceeeeeccCcceeEeecccccccceE
Confidence 1245667789999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005349 328 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (701)
Q Consensus 328 aFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iw 407 (701)
+|-|+|.-+||||+|++ +|+||++.. +.+..+..-.....|.+++||..|++|.+|-.|.+++||
T Consensus 236 ~ffP~G~afatGSDD~t-cRlyDlRaD--------------~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vW 300 (343)
T KOG0286|consen 236 RFFPSGDAFATGSDDAT-CRLYDLRAD--------------QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVW 300 (343)
T ss_pred EEccCCCeeeecCCCce-eEEEeecCC--------------cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEe
Confidence 99999999999999998 899999986 333333322333459999999999999999999999999
Q ss_pred ecCCCCCceeecCCCCCcc
Q 005349 408 AINPLGGSVNFQPTDANFT 426 (701)
Q Consensus 408 dl~~~g~~~~~~~H~~~~~ 426 (701)
|.-+....-.+.+|.+.++
T Consensus 301 Dtlk~e~vg~L~GHeNRvS 319 (343)
T KOG0286|consen 301 DTLKGERVGVLAGHENRVS 319 (343)
T ss_pred eccccceEEEeeccCCeeE
Confidence 9988766667889987654
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.82 E-value=2.1e-18 Score=174.73 Aligned_cols=185 Identities=15% Similarity=0.300 Sum_probs=140.9
Q ss_pred CCcEEEEEECCCCcEEEEEec-CCCEEEEEecC---CEEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCccc
Q 005349 115 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---RVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (701)
Q Consensus 115 ~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~---~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~ 190 (701)
+++++|+||+.+|+..+.|.. ..-|.+|+|++ +++..+-|++|.+||.-. .+.+++.....
T Consensus 83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~-------------- 147 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSH-------------- 147 (315)
T ss_pred ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCC--------------
Confidence 679999999999988887765 56899999974 444447799999999865 45666644310
Q ss_pred ceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccccc
Q 005349 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (701)
Q Consensus 191 ~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~ 270 (701)
..|+..- |++|...
T Consensus 148 ------~~WVscv----------rfsP~~~-------------------------------------------------- 161 (315)
T KOG0279|consen 148 ------REWVSCV----------RFSPNES-------------------------------------------------- 161 (315)
T ss_pred ------cCcEEEE----------EEcCCCC--------------------------------------------------
Confidence 0122110 0001100
Q ss_pred CCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 005349 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 350 (701)
Q Consensus 271 p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwd 350 (701)
+..+++++.|++|+|||+.+.+....|.+|++.++.++|||||.++++|+.||. +.+||
T Consensus 162 --------------------~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~Lwd 220 (315)
T KOG0279|consen 162 --------------------NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWD 220 (315)
T ss_pred --------------------CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEE
Confidence 113455678999999999999999999999999999999999999999999998 89999
Q ss_pred cCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 005349 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 351 l~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~ 419 (701)
+..+ +++|.|.- ...|.+++|+|.-.||+.+... .|+|||+.+......++
T Consensus 221 L~~~--------------k~lysl~a---~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 221 LNEG--------------KNLYSLEA---FDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELK 271 (315)
T ss_pred ccCC--------------ceeEeccC---CCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhcc
Confidence 9987 78999852 3459999999999999888765 49999998876554443
No 15
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.81 E-value=3e-17 Score=165.25 Aligned_cols=222 Identities=17% Similarity=0.307 Sum_probs=163.9
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.+++.+.++.+++||++.. .....+..|.+.|.++.+.|+ ..+++.+..
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~--------------~~~~~~~~~--------------- 113 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETG-ECVRTLTGHTSYVSSVAFSPD--------------GRILSSSSR--------------- 113 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcc-cceEEEeccCCcEEEEEEcCC--------------CCEEEEecC---------------
Confidence 35555666778999999863 344445567788998888753 124443321
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe-cCCCEEEEEecC--CEEEEEe-CCEEEEEECCCCceeEEEec
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS--RVVAICQ-AAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~-f~s~V~sV~~s~--~~LaVa~-~~~I~iwDl~t~~~~~tl~t 173 (701)
++.|++||+++++.+..+. +...|.++.+++ ++++++. ++.|++||+.+.+....+..
T Consensus 114 ------------------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 175 (289)
T cd00200 114 ------------------DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG 175 (289)
T ss_pred ------------------CCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec
Confidence 1679999999999988887 466899999975 6777766 89999999998777666654
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEE
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~ 253 (701)
+... + .-+++.. + +.
T Consensus 176 ~~~~---------------i----~~~~~~~-------------~--------------~~------------------- 190 (289)
T cd00200 176 HTGE---------------V----NSVAFSP-------------D--------------GE------------------- 190 (289)
T ss_pred Cccc---------------c----ceEEECC-------------C--------------cC-------------------
Confidence 3210 0 0112210 0 00
Q ss_pred cCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCC
Q 005349 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (701)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG 333 (701)
.++.+..+|.|++||+.+++.+..++.|..+|.+++|+|++
T Consensus 191 ---------------------------------------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 231 (289)
T cd00200 191 ---------------------------------------KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231 (289)
T ss_pred ---------------------------------------EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC
Confidence 11122347899999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005349 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 334 ~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwd 408 (701)
.++++++.+|+ |++||+..+ ..+..+. ++ ...|.+++|++++++|++++.||+++||+
T Consensus 232 ~~~~~~~~~~~-i~i~~~~~~--------------~~~~~~~-~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 232 YLLASGSEDGT-IRVWDLRTG--------------ECVQTLS-GH-TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCCc-EEEEEcCCc--------------eeEEEcc-cc-CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999998887 899999865 4455554 33 34599999999999999999999999996
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.4e-18 Score=181.00 Aligned_cols=239 Identities=11% Similarity=0.177 Sum_probs=180.0
Q ss_pred CcEEEEeccCC-eEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~~~g-~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
.++|+.+...- +++||.+..-.+...+.+|+-.|.++.++|.+ ..|+-|+
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g--------------d~ilS~s--------------- 212 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG--------------DHILSCS--------------- 212 (406)
T ss_pred ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC--------------Ceeeecc---------------
Confidence 67777777766 99999987656677777899999999999852 1233222
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEe
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAIL 172 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~ 172 (701)
.+++|+.|++.||-|+.++.- +..|+.|+.+ +.++|. +.+.++++|-+.+++|+..+.
T Consensus 213 ------------------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR 274 (406)
T KOG0295|consen 213 ------------------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR 274 (406)
T ss_pred ------------------cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh
Confidence 348899999999999999976 5689999997 567777 457899999999998887777
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeE
Q 005349 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (701)
Q Consensus 173 t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~ 252 (701)
.|..+. ..+ |++......+..++
T Consensus 275 ~hEh~v------------Eci-------~wap~~~~~~i~~a-------------------------------------- 297 (406)
T KOG0295|consen 275 EHEHPV------------ECI-------AWAPESSYPSISEA-------------------------------------- 297 (406)
T ss_pred ccccce------------EEE-------EecccccCcchhhc--------------------------------------
Confidence 664321 122 23210000000000
Q ss_pred EcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCC
Q 005349 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (701)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd 332 (701)
.+.. +| ...+..+..|++|++||+.++.++-++.+|.+.|..++|+|-
T Consensus 298 -----------------t~~~-------------~~--~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~ 345 (406)
T KOG0295|consen 298 -----------------TGST-------------NG--GQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPG 345 (406)
T ss_pred -----------------cCCC-------------CC--ccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCC
Confidence 0000 00 001234678999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 333 G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
|+||+++.+|++ +||||++.. +|++++. . +..-+.++.|..+.-++.+|+-|.++++|.-
T Consensus 346 Gkyi~ScaDDkt-lrvwdl~~~--------------~cmk~~~-a-h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 346 GKYILSCADDKT-LRVWDLKNL--------------QCMKTLE-A-HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CeEEEEEecCCc-EEEEEeccc--------------eeeeccC-C-CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999998 899999987 7887775 2 3456999999999999999999999999963
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.80 E-value=6e-18 Score=169.02 Aligned_cols=230 Identities=15% Similarity=0.218 Sum_probs=159.7
Q ss_pred CCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEEEeCCEEEEEECCCCce--eEEEecCCCccCCCCCCCCCcc
Q 005349 115 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAICQAAQVHCFDAATLEI--EYAILTNPIVMGHPSAGGIGIG 189 (701)
Q Consensus 115 ~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaVa~~~~I~iwDl~t~~~--~~tl~t~~~~~~~~~~~~~~~~ 189 (701)
++.|||||-+.||.|..++++ .+.|.++.+. ++.||++....|++||+++... +.+++.+..
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k------------- 84 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK------------- 84 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC-------------
Confidence 569999999999999999999 5799999996 6889999999999999998753 666666521
Q ss_pred cceeeec----cceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccc
Q 005349 190 YGPLAVG----PRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQY 265 (701)
Q Consensus 190 ~~piAls----~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y 265 (701)
|..++| .||+...+.+ .++..|..++- ...+-
T Consensus 85 -NVtaVgF~~dgrWMyTgseD---------------------------gt~kIWdlR~~----------------~~qR~ 120 (311)
T KOG0315|consen 85 -NVTAVGFQCDGRWMYTGSED---------------------------GTVKIWDLRSL----------------SCQRN 120 (311)
T ss_pred -ceEEEEEeecCeEEEecCCC---------------------------ceEEEEeccCc----------------ccchh
Confidence 223333 4888765433 22222221110 00000
Q ss_pred cccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEee-cCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005349 266 CSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGH 344 (701)
Q Consensus 266 ~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-~H~~~Is~laFSPdG~lLaTaS~dGt 344 (701)
+..-.|- +. ....|. -+++.+++++|.|+|||+....+..++- .-..+|.++...|||++|+.+-..|+
T Consensus 121 ~~~~spV--n~-vvlhpn-------QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 121 YQHNSPV--NT-VVLHPN-------QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred ccCCCCc--ce-EEecCC-------cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc
Confidence 0000000 00 000110 1356778899999999999987766655 44579999999999999999999998
Q ss_pred EEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC-CCceeecCCC
Q 005349 345 NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL-GGSVNFQPTD 422 (701)
Q Consensus 345 ~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~-g~~~~~~~H~ 422 (701)
..+|++..+..-+ ....+.+++ .+ ..-|..+-||||+++||++|+|.|++||+++.+ ..+..+++|+
T Consensus 191 -cyvW~l~~~~~~s--------~l~P~~k~~-ah-~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 191 -CYVWRLLNHQTAS--------ELEPVHKFQ-AH-NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred -EEEEEccCCCccc--------cceEhhhee-cc-cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 8999998752111 223444443 22 233889999999999999999999999999988 6677778884
No 18
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.80 E-value=8.5e-17 Score=161.94 Aligned_cols=236 Identities=19% Similarity=0.311 Sum_probs=171.1
Q ss_pred CcEEEEec-cCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~-~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
...|+.|. ++.+++||++. +.....+..|..++..+.+.|+. ..+++++.
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~--------------~~l~~~~~-------------- 71 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLET-GELLRTLKGHTGPVRDVAASADG--------------TYLASGSS-------------- 71 (289)
T ss_pred CCEEEEeecCcEEEEEEeeC-CCcEEEEecCCcceeEEEECCCC--------------CEEEEEcC--------------
Confidence 34555555 67799999987 34555556678888777776531 24444432
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecC--CEEEEEe-CCEEEEEECCCCceeEEEe
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVVAICQ-AAQVHCFDAATLEIEYAIL 172 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~--~~LaVa~-~~~I~iwDl~t~~~~~tl~ 172 (701)
++.|++||+.+++.+..+.. ...|.++.+++ ++++++. ++.|++||+.+.+....+.
T Consensus 72 -------------------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 132 (289)
T cd00200 72 -------------------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132 (289)
T ss_pred -------------------CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec
Confidence 16799999999888888775 45899999975 6777776 8999999999887766665
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeE
Q 005349 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (701)
Q Consensus 173 t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~ 252 (701)
.+.. ++ ..+++.. + +.
T Consensus 133 ~~~~---------------~i----~~~~~~~-------------~--------------~~------------------ 148 (289)
T cd00200 133 GHTD---------------WV----NSVAFSP-------------D--------------GT------------------ 148 (289)
T ss_pred cCCC---------------cE----EEEEEcC-------------c--------------CC------------------
Confidence 4321 01 1122220 0 00
Q ss_pred EcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCC
Q 005349 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (701)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd 332 (701)
.++.+..+|.|++||+.+++.+..+..|..+|.+++|+|+
T Consensus 149 ----------------------------------------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 188 (289)
T cd00200 149 ----------------------------------------FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD 188 (289)
T ss_pred ----------------------------------------EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCC
Confidence 0112234789999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 333 G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
|+.|++++.+|. |++||+..+ ..+..+. ++ ...|.+++|+|++.++++++.||++++|++...
T Consensus 189 ~~~l~~~~~~~~-i~i~d~~~~--------------~~~~~~~-~~-~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 189 GEKLLSSSSDGT-IKLWDLSTG--------------KCLGTLR-GH-ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred cCEEEEecCCCc-EEEEECCCC--------------ceecchh-hc-CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 999999999987 899999865 3333332 22 235999999999999999998999999999876
Q ss_pred CCceeecCCC
Q 005349 413 GGSVNFQPTD 422 (701)
Q Consensus 413 g~~~~~~~H~ 422 (701)
.....+..|.
T Consensus 252 ~~~~~~~~~~ 261 (289)
T cd00200 252 ECVQTLSGHT 261 (289)
T ss_pred eeEEEccccC
Confidence 5555555553
No 19
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.80 E-value=2.4e-17 Score=198.01 Aligned_cols=227 Identities=14% Similarity=0.223 Sum_probs=163.1
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
..++..++++.++|||+.. +.....+..|.+.|.++.+.|.. ..+|+.++.
T Consensus 546 ~~las~~~Dg~v~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~~-------------~~~L~Sgs~--------------- 596 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVAR-SQLVTEMKEHEKRVWSIDYSSAD-------------PTLLASGSD--------------- 596 (793)
T ss_pred CEEEEEeCCCeEEEEECCC-CeEEEEecCCCCCEEEEEEcCCC-------------CCEEEEEcC---------------
Confidence 4456667788899999986 44555566799999999997521 124443332
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec---CCEEEE-EeCCEEEEEECCCCc-eeEEEe
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLE-IEYAIL 172 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s---~~~LaV-a~~~~I~iwDl~t~~-~~~tl~ 172 (701)
+++|++||+++++++.++.....|.++.|+ +++|++ +.++.|++||+++.+ .+.++.
T Consensus 597 ------------------Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~ 658 (793)
T PLN00181 597 ------------------DGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658 (793)
T ss_pred ------------------CCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec
Confidence 278999999999999999988899999994 567776 678999999998765 233443
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeE
Q 005349 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (701)
Q Consensus 173 t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~ 252 (701)
.|.. ++ .+++|..
T Consensus 659 ~h~~---------------~V----~~v~f~~------------------------------------------------ 671 (793)
T PLN00181 659 GHSK---------------TV----SYVRFVD------------------------------------------------ 671 (793)
T ss_pred CCCC---------------CE----EEEEEeC------------------------------------------------
Confidence 3311 11 1122210
Q ss_pred EcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCC------CcEEEEeecCCCCeEE
Q 005349 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS------KNVIAQFRAHKSPISA 326 (701)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s------~~~i~~~~~H~~~Is~ 326 (701)
...++++..|++|+|||+.. ..++..|.+|...+.+
T Consensus 672 --------------------------------------~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 672 --------------------------------------SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred --------------------------------------CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 00123456789999999974 3578899999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe---------ccCCcccEEEEEEcCCCCEEEE
Q 005349 327 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---------RGLTNAVIQDISFSDDSNWIMI 397 (701)
Q Consensus 327 laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~---------rG~~~a~I~~iaFSpDg~~lAs 397 (701)
++|+|+|.+||+|+.||+ |+||+...... ...+.+. -......|.+++|+||++.|++
T Consensus 714 v~~s~~~~~lasgs~D~~-v~iw~~~~~~~------------~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva 780 (793)
T PLN00181 714 VGLSVSDGYIATGSETNE-VFVYHKAFPMP------------VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVA 780 (793)
T ss_pred EEEcCCCCEEEEEeCCCE-EEEEECCCCCc------------eEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEE
Confidence 999999999999999997 89999764310 1111110 0011234999999999999999
Q ss_pred EeCCCcEEEEec
Q 005349 398 SSSRGTSHLFAI 409 (701)
Q Consensus 398 gS~dgTI~Iwdl 409 (701)
|+.||+|+||++
T Consensus 781 ~~~dG~I~i~~~ 792 (793)
T PLN00181 781 ANSTGNIKILEM 792 (793)
T ss_pred ecCCCcEEEEec
Confidence 999999999997
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.79 E-value=2.4e-17 Score=176.43 Aligned_cols=269 Identities=18% Similarity=0.298 Sum_probs=187.6
Q ss_pred CcEEEEeccCC-eEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~~~g-~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
..+|+.|.-+| +++|+.+ |+....+..|.|||..++.-.++ . .|+ ..+
T Consensus 247 G~~LatG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk~G--------~------yil--S~~------------- 295 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNKKG--------T------YIL--SGG------------- 295 (524)
T ss_pred CCeEEEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcCCC--------C------EEE--ecc-------------
Confidence 77888888777 7999987 46777888999999999874321 1 222 111
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCE-EEEEec-CCEEE-EEeCCEEEEEECCCCceeEEEec
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPI-YSVRCS-SRVVA-ICQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V-~sV~~s-~~~La-Va~~~~I~iwDl~t~~~~~tl~t 173 (701)
.++++-+||..+|+....+.|.+.. .+|.+- ..-+| ...++.|+||-+..-+...++.+
T Consensus 296 ------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G 357 (524)
T KOG0273|consen 296 ------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG 357 (524)
T ss_pred ------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeec
Confidence 2378999999999999999997755 888883 33444 46788999999988888888888
Q ss_pred CCCccCCCCCCCCCcccceeeecc--ceEEEcCCC--ceecCCCccCCcccccccccccccCCCcceeehhhhchhchhc
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~--r~LAya~~~--~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~ 249 (701)
|.++ ++.+-..| ..||.++++ +..|+.+.-...| .+ ..-+|++
T Consensus 358 H~g~------------V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~--------------~l-----~~Hskei-- 404 (524)
T KOG0273|consen 358 HHGE------------VNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH--------------DL-----QAHSKEI-- 404 (524)
T ss_pred ccCc------------eEEEEECCCCceEEEecCCCeeEeeecCCCcchh--------------hh-----hhhccce--
Confidence 7543 23343333 456666543 2223221100000 00 0001111
Q ss_pred eeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEE
Q 005349 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (701)
Q Consensus 250 gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laF 329 (701)
|-....|++... .+-..+..++++..|++|++||+..+.++..|..|+.||.+|+|
T Consensus 405 ---------------~t~~wsp~g~v~---------~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvaf 460 (524)
T KOG0273|consen 405 ---------------YTIKWSPTGPVT---------SNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAF 460 (524)
T ss_pred ---------------eeEeecCCCCcc---------CCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEe
Confidence 111223332110 01111334667889999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 330 DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 330 SPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
||+|++||+||.||. |+||+++++ .+++-.+|. .-|..++|+.+|..|+.+-+|+.+.+-|+
T Consensus 461 S~~g~ylAsGs~dg~-V~iws~~~~---------------~l~~s~~~~--~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGC-VHIWSTKTG---------------KLVKSYQGT--GGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred cCCCcEEEecCCCCe-eEeccccch---------------heeEeecCC--CeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 999999999999997 999999986 445544553 34999999999999999999999999887
Q ss_pred C
Q 005349 410 N 410 (701)
Q Consensus 410 ~ 410 (701)
.
T Consensus 523 r 523 (524)
T KOG0273|consen 523 R 523 (524)
T ss_pred c
Confidence 4
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.78 E-value=3e-17 Score=185.16 Aligned_cols=191 Identities=19% Similarity=0.317 Sum_probs=150.9
Q ss_pred CCcEEEEEECCCCc--EEEEE-ecCCCEEEEEec--CCEEEE-EeCCEEEEEEC-CCCceeEEEecCCCccCCCCCCCCC
Q 005349 115 VPTVVHFYSLRSQS--YVHML-KFRSPIYSVRCS--SRVVAI-CQAAQVHCFDA-ATLEIEYAILTNPIVMGHPSAGGIG 187 (701)
Q Consensus 115 ~~~tVriWdl~tg~--~v~tL-~f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl-~t~~~~~tl~t~~~~~~~~~~~~~~ 187 (701)
.++++++|++.+++ +.+++ .+...|..++|+ +++++. +.|.+|+|||+ ..+.+++++.+|.+..
T Consensus 179 ~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v--------- 249 (456)
T KOG0266|consen 179 SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYV--------- 249 (456)
T ss_pred CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCce---------
Confidence 45889999998888 67776 356789999996 466665 67889999999 5568889998885421
Q ss_pred cccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccc
Q 005349 188 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 267 (701)
Q Consensus 188 ~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~ 267 (701)
.. ++|. |+ |.
T Consensus 250 ---~~-------~~f~-------------p~--------------g~--------------------------------- 259 (456)
T KOG0266|consen 250 ---TS-------VAFS-------------PD--------------GN--------------------------------- 259 (456)
T ss_pred ---EE-------EEec-------------CC--------------CC---------------------------------
Confidence 11 2232 11 00
Q ss_pred cccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005349 268 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 347 (701)
Q Consensus 268 ~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~ 347 (701)
.++++..|++|+|||+.+++++..|++|.++|++++|++||.+|+++|.||. |+
T Consensus 260 -------------------------~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~-i~ 313 (456)
T KOG0266|consen 260 -------------------------LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT-IR 313 (456)
T ss_pred -------------------------EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc-EE
Confidence 2234678999999999999999999999999999999999999999999987 99
Q ss_pred EEEcCCCCCCCCCccCCCCceeEEEEEeccCCcc-cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCC
Q 005349 348 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA-VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (701)
Q Consensus 348 Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a-~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~ 423 (701)
|||+.++ ...++..+.. .... .+.+++|+|++++|++++.|+++++|++........+.+|..
T Consensus 314 vwd~~~~------------~~~~~~~~~~-~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~ 377 (456)
T KOG0266|consen 314 VWDLETG------------SKLCLKLLSG-AENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN 377 (456)
T ss_pred EEECCCC------------ceeeeecccC-CCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence 9999987 1113445543 3333 689999999999999999999999999998888888888854
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.78 E-value=6e-17 Score=182.70 Aligned_cols=237 Identities=17% Similarity=0.225 Sum_probs=174.4
Q ss_pred cEEEEeccCCeEEEEecCCC-CeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 19 RVLLLGYRSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 19 ~vL~~g~~~g~qVwdv~~~~-~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
.+.....+.-+.+|+..... +....+..|.-.|+.+++.|++. . +++.+
T Consensus 173 ~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~--------------~--l~s~s-------------- 222 (456)
T KOG0266|consen 173 ALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS--------------Y--LLSGS-------------- 222 (456)
T ss_pred eEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc--------------E--EEEec--------------
Confidence 33344456668999996533 13333367888899999987541 1 22221
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEEC-CCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEe
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSL-RSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAIL 172 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl-~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~ 172 (701)
.+.+|||||+ ..+.++++|+- ...|++++|+ +++|+. +.|++|+|||+.+++++.++.
T Consensus 223 -----------------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 223 -----------------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred -----------------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee
Confidence 2388999999 55689999974 6799999997 456665 679999999999999999998
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeE
Q 005349 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (701)
Q Consensus 173 t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~ 252 (701)
+|... +. -+++..+ |.
T Consensus 286 ~hs~~---------------is----~~~f~~d---------------------------~~------------------ 301 (456)
T KOG0266|consen 286 GHSDG---------------IS----GLAFSPD---------------------------GN------------------ 301 (456)
T ss_pred ccCCc---------------eE----EEEECCC---------------------------CC------------------
Confidence 88431 11 1223210 00
Q ss_pred EcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc--EEEEeecCCCC--eEEEE
Q 005349 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKSP--ISALC 328 (701)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~--~i~~~~~H~~~--Is~la 328 (701)
.+++++.||.|+|||+.++. ++..+..+..+ +++++
T Consensus 302 ----------------------------------------~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (456)
T KOG0266|consen 302 ----------------------------------------LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQ 341 (456)
T ss_pred ----------------------------------------EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEE
Confidence 12234568999999999998 67888888766 99999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcc--cEEEEEEcCCCCEEEEEeCCCcEEE
Q 005349 329 FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA--VIQDISFSDDSNWIMISSSRGTSHL 406 (701)
Q Consensus 329 FSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a--~I~~iaFSpDg~~lAsgS~dgTI~I 406 (701)
|+|+|++|+++..|++ +++||+..+ ..+..+ +++... .+.+..++++++++.+|+.|++|++
T Consensus 342 fsp~~~~ll~~~~d~~-~~~w~l~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~ 405 (456)
T KOG0266|consen 342 FSPNGKYLLSASLDRT-LKLWDLRSG--------------KSVGTY-TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV 405 (456)
T ss_pred ECCCCcEEEEecCCCe-EEEEEccCC--------------cceeee-cccCCcceeEecccccCCCCeEEEEeCCceEEE
Confidence 9999999999999987 999999876 222222 344443 4667777999999999999999999
Q ss_pred EecCCCCCceeecCCC
Q 005349 407 FAINPLGGSVNFQPTD 422 (701)
Q Consensus 407 wdl~~~g~~~~~~~H~ 422 (701)
|++.+......+..|.
T Consensus 406 ~~~~s~~~~~~l~~h~ 421 (456)
T KOG0266|consen 406 WDSSSGGILQRLEGHS 421 (456)
T ss_pred EeCCccchhhhhcCCC
Confidence 9999977777888883
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.77 E-value=5.8e-17 Score=165.20 Aligned_cols=182 Identities=14% Similarity=0.236 Sum_probs=144.0
Q ss_pred CcEEEEEECCCCcEEEEEecCC-CEEEEEec--CCEEEE-EeCCEEEEEECCCCce------eEEEecCCCccCCCCCCC
Q 005349 116 PTVVHFYSLRSQSYVHMLKFRS-PIYSVRCS--SRVVAI-CQAAQVHCFDAATLEI------EYAILTNPIVMGHPSAGG 185 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~tL~f~s-~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~------~~tl~t~~~~~~~~~~~~ 185 (701)
++.+.|||.-|...+|-|..++ .|-..+|+ +++||. ++|++..||++.+-+. .+.+.+|
T Consensus 76 DGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH----------- 144 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH----------- 144 (343)
T ss_pred CCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCc-----------
Confidence 3789999999999999999975 78888885 688887 6899999999986521 1111111
Q ss_pred CCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccc
Q 005349 186 IGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQY 265 (701)
Q Consensus 186 ~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y 265 (701)
.+|-.-=+|
T Consensus 145 -----------------------------------------------------------------------tgylScC~f 153 (343)
T KOG0286|consen 145 -----------------------------------------------------------------------TGYLSCCRF 153 (343)
T ss_pred -----------------------------------------------------------------------cceeEEEEE
Confidence 111000001
Q ss_pred cccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCc
Q 005349 266 CSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGH 344 (701)
Q Consensus 266 ~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt 344 (701)
++ .+++++++.|.+..+||+++++.+..|.+|++.|.+|+++| +++.++||+-|++
T Consensus 154 ----~d-------------------D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ 210 (343)
T KOG0286|consen 154 ----LD-------------------DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS 210 (343)
T ss_pred ----cC-------------------CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccc
Confidence 11 12566778899999999999999999999999999999999 9999999999987
Q ss_pred EEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 005349 345 NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 345 ~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~ 419 (701)
.+|||++.+ .+...|. ||. ..|..|+|-|+|.-+|+||+|+|+++|||....+...+.
T Consensus 211 -aklWD~R~~--------------~c~qtF~-ghe-sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys 268 (343)
T KOG0286|consen 211 -AKLWDVRSG--------------QCVQTFE-GHE-SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS 268 (343)
T ss_pred -eeeeeccCc--------------ceeEeec-ccc-cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec
Confidence 799999987 6777774 654 569999999999999999999999999998754443433
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1e-17 Score=174.69 Aligned_cols=236 Identities=15% Similarity=0.256 Sum_probs=178.8
Q ss_pred CcEEEEe-ccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLG-YRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g-~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
..+.+++ -+..+++||.++ +++.+.+.+|...|..+.+-.. .-+|+-|+.+
T Consensus 120 ~~~v~~as~d~tikv~D~~t-g~~e~~LrGHt~sv~di~~~a~--------------Gk~l~tcSsD------------- 171 (406)
T KOG0295|consen 120 EALVVSASEDATIKVFDTET-GELERSLRGHTDSVFDISFDAS--------------GKYLATCSSD------------- 171 (406)
T ss_pred ceEEEEecCCceEEEEEccc-hhhhhhhhccccceeEEEEecC--------------ccEEEecCCc-------------
Confidence 3444445 355699999997 7777777788777887776421 1244444321
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCC-CcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEE
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRS-QSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAI 171 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~t-g~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl 171 (701)
-.+++||+.+ .+|++++.. ...|.+|.|- +..|+. +-|++|+.||..|+-+++++
T Consensus 172 --------------------l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~ 231 (406)
T KOG0295|consen 172 --------------------LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF 231 (406)
T ss_pred --------------------cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEec
Confidence 3389999987 567776654 5688899984 566665 56899999999999999888
Q ss_pred ecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhcee
Q 005349 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (701)
Q Consensus 172 ~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl 251 (701)
..++.- + |.++-.
T Consensus 232 ~~h~ew---------------v----r~v~v~------------------------------------------------ 244 (406)
T KOG0295|consen 232 PGHSEW---------------V----RMVRVN------------------------------------------------ 244 (406)
T ss_pred cCchHh---------------E----EEEEec------------------------------------------------
Confidence 766320 0 111110
Q ss_pred EEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC
Q 005349 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (701)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP 331 (701)
+ +|. .+++++.|-+|++|-+.++++...|+.|..+|-|++|-|
T Consensus 245 ---~-------------------------------DGt---i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap 287 (406)
T KOG0295|consen 245 ---Q-------------------------------DGT---IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAP 287 (406)
T ss_pred ---C-------------------------------Cee---EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecc
Confidence 0 010 123456788999999999999999999999999999976
Q ss_pred C---------------CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEE
Q 005349 332 S---------------GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIM 396 (701)
Q Consensus 332 d---------------G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lA 396 (701)
. |.+|+++|.|++ |++||+.++ .+|.+|. |+.+ .|.+++|+|-|+||+
T Consensus 288 ~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg--------------~cL~tL~-ghdn-wVr~~af~p~Gkyi~ 350 (406)
T KOG0295|consen 288 ESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTG--------------MCLFTLV-GHDN-WVRGVAFSPGGKYIL 350 (406)
T ss_pred cccCcchhhccCCCCCccEEEeecccce-EEEEeccCC--------------eEEEEEe-cccc-eeeeeEEcCCCeEEE
Confidence 3 259999999987 999999998 8999994 6654 499999999999999
Q ss_pred EEeCCCcEEEEecCCCCCceeecCCC
Q 005349 397 ISSSRGTSHLFAINPLGGSVNFQPTD 422 (701)
Q Consensus 397 sgS~dgTI~Iwdl~~~g~~~~~~~H~ 422 (701)
++.+|+|+||||++...+..++..|.
T Consensus 351 ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 351 SCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred EEecCCcEEEEEeccceeeeccCCCc
Confidence 99999999999999988888888774
No 25
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.77 E-value=8.5e-19 Score=181.35 Aligned_cols=211 Identities=16% Similarity=0.261 Sum_probs=159.0
Q ss_pred cCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCC
Q 005349 26 RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSAN 105 (701)
Q Consensus 26 ~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~ 105 (701)
+++++|||.++. .+..++.+|.|.|-|+++- .| ++++++
T Consensus 216 DnTikiWD~n~~-~c~~~L~GHtGSVLCLqyd---------------~r---viisGS---------------------- 254 (499)
T KOG0281|consen 216 DNTIKIWDKNSL-ECLKILTGHTGSVLCLQYD---------------ER---VIVSGS---------------------- 254 (499)
T ss_pred cCceEEeccccH-HHHHhhhcCCCcEEeeecc---------------ce---EEEecC----------------------
Confidence 567899999874 6788888999999999862 12 234432
Q ss_pred CCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecCCEEEE-EeCCEEEEEECCCCce---eEEEecCCCccCC
Q 005349 106 YHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEI---EYAILTNPIVMGH 180 (701)
Q Consensus 106 ~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t~~~---~~tl~t~~~~~~~ 180 (701)
.+.||++||..||++++++-+ -..|..+.|+..+++. +-|..|.+||+..... .+.|.+|-
T Consensus 255 ---------SDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr----- 320 (499)
T KOG0281|consen 255 ---------SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR----- 320 (499)
T ss_pred ---------CCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhh-----
Confidence 237899999999999999866 5689999999888777 5688999999875431 11111220
Q ss_pred CCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccce
Q 005349 181 PSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 260 (701)
Q Consensus 181 ~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~ 260 (701)
..+|.+..+
T Consensus 321 -------AaVNvVdfd---------------------------------------------------------------- 329 (499)
T KOG0281|consen 321 -------AAVNVVDFD---------------------------------------------------------------- 329 (499)
T ss_pred -------hheeeeccc----------------------------------------------------------------
Confidence 001111000
Q ss_pred ecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEe
Q 005349 261 KLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS 340 (701)
Q Consensus 261 ~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS 340 (701)
...+++++.|.+|++|++.+++.+.++.+|.-.|.|+.+ .|+++++||
T Consensus 330 ------------------------------~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGS 377 (499)
T KOG0281|consen 330 ------------------------------DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS 377 (499)
T ss_pred ------------------------------cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecC
Confidence 012345667889999999999999999999999999987 489999999
Q ss_pred CCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 005349 341 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 341 ~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g 413 (701)
.|.+ ||+||+..| .+|..|+ ||. .-|.||.| |.+.+++|.-||+|+|||+...-
T Consensus 378 SDnt-IRlwdi~~G--------------~cLRvLe-GHE-eLvRciRF--d~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 378 SDNT-IRLWDIECG--------------ACLRVLE-GHE-ELVRCIRF--DNKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred CCce-EEEEecccc--------------HHHHHHh-chH-Hhhhheee--cCceeeeccccceEEEEeccccc
Confidence 9987 999999987 6665553 543 23999999 66899999999999999998653
No 26
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.76 E-value=5.4e-17 Score=165.94 Aligned_cols=246 Identities=13% Similarity=0.123 Sum_probs=176.4
Q ss_pred CcEE-EEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVL-LLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL-~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
..+| ..|+++-+-+|++..--+-.-.+..|.|.|--+.+.++. ..|.-|+
T Consensus 59 gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~--------------s~i~S~g--------------- 109 (338)
T KOG0265|consen 59 GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG--------------SHILSCG--------------- 109 (338)
T ss_pred CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC--------------CEEEEec---------------
Confidence 4444 457888999999865333345566899999988876532 1232232
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCC-CEEEEEec---CCEEEE-EeCCEEEEEECCCCceeEEE
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS-PIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAI 171 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s-~V~sV~~s---~~~LaV-a~~~~I~iwDl~t~~~~~tl 171 (701)
.+++|+.||.+||++++.++... -|.++.-+ ..+|.. ..|+++++||+++-+.++++
T Consensus 110 ------------------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 110 ------------------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred ------------------CCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc
Confidence 23899999999999999887654 44444433 345555 46789999999987766555
Q ss_pred ecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhcee
Q 005349 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (701)
Q Consensus 172 ~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl 251 (701)
+. ++.. .|+ ++. +
T Consensus 172 ~~---kyql------------tAv-----~f~--d--------------------------------------------- 184 (338)
T KOG0265|consen 172 EN---KYQL------------TAV-----GFK--D--------------------------------------------- 184 (338)
T ss_pred cc---ceeE------------EEE-----Eec--c---------------------------------------------
Confidence 32 1110 111 111 0
Q ss_pred EEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC
Q 005349 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (701)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP 331 (701)
.+ ..+.++.-|+.|++||+..+..+.++++|..+|+.|..+|
T Consensus 185 -----~s---------------------------------~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~ 226 (338)
T KOG0265|consen 185 -----TS---------------------------------DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR 226 (338)
T ss_pred -----cc---------------------------------cceeeccccCceeeeccccCcceEEeecccCceeeEEecc
Confidence 00 0112244578899999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCccc--EEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV--IQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 332 dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~--I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
+|.+|.+=+-|.+ +++||+++..+ ..+++..+.-+.++-. ...++|||+++.+.+||.|+.++|||.
T Consensus 227 ~gs~llsnsMd~t-vrvwd~rp~~p----------~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 227 YGSFLLSNSMDNT-VRVWDVRPFAP----------SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT 295 (338)
T ss_pred CCCccccccccce-EEEEEecccCC----------CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeec
Confidence 9999999999976 99999998622 2356666654333322 567999999999999999999999999
Q ss_pred CCCCCceeecCCCCCcc
Q 005349 410 NPLGGSVNFQPTDANFT 426 (701)
Q Consensus 410 ~~~g~~~~~~~H~~~~~ 426 (701)
...+....+-+|.+.+.
T Consensus 296 ~~r~~lyklpGh~gsvn 312 (338)
T KOG0265|consen 296 TSRRILYKLPGHYGSVN 312 (338)
T ss_pred ccccEEEEcCCcceeEE
Confidence 88777788888865554
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.75 E-value=2.3e-17 Score=185.99 Aligned_cols=116 Identities=13% Similarity=0.249 Sum_probs=100.6
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
|++++.|++.++|......+++.|.+|-+.|.|++|+|+..|+||||.|.+ +|+||+.+| ..+ +
T Consensus 508 Fatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G--------------~~V-R 571 (707)
T KOG0263|consen 508 FATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTG--------------NSV-R 571 (707)
T ss_pred EEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCC--------------cEE-E
Confidence 345677899999999999999999999999999999999999999999976 999999988 232 3
Q ss_pred EeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 005349 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 426 (701)
Q Consensus 374 l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~~~ 426 (701)
+.+||+ +.|.+++|||+|+|||+|+.||.|+|||+....-...+.+|.+.+.
T Consensus 572 iF~GH~-~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~ 623 (707)
T KOG0263|consen 572 IFTGHK-GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIY 623 (707)
T ss_pred EecCCC-CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCcee
Confidence 336865 5799999999999999999999999999987666668889965544
No 28
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=1.4e-17 Score=173.62 Aligned_cols=255 Identities=17% Similarity=0.243 Sum_probs=174.2
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCc----cccCC-CEEEEEeCCCCcCCcccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDK----FAEVR-PLLVFCADGSRSCGTKVQ 92 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~----f~~~r-pllavv~~g~~~~~~~~~ 92 (701)
..|+..++++.+++||+.. -++...+..|+|.|+-+.+-.+... ....|. +...- |+=.+.+++...|.
T Consensus 80 s~~aSGs~DG~VkiWnlsq-R~~~~~f~AH~G~V~Gi~v~~~~~~-tvgdDKtvK~wk~~~~p~~tilg~s~~~gI---- 153 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQ-RECIRTFKAHEGLVRGICVTQTSFF-TVGDDKTVKQWKIDGPPLHTILGKSVYLGI---- 153 (433)
T ss_pred hhhhccccCceEEEEehhh-hhhhheeecccCceeeEEecccceE-EecCCcceeeeeccCCcceeeecccccccc----
Confidence 5677788899999999987 4677788889999999887532111 111111 11000 22122222111111
Q ss_pred CCcccccCCCCCCCCCCCCCCCCC--cEEEEEECCCCcEEEEEec-CCCEEEEEecC---CEEEEE-eCCEEEEEECCCC
Q 005349 93 DGLATACNGTSANYHDLGNGSSVP--TVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---RVVAIC-QAAQVHCFDAATL 165 (701)
Q Consensus 93 d~~~~~~~g~~~~~~~~~~~~~~~--~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~---~~LaVa-~~~~I~iwDl~t~ 165 (701)
| |.-.+..|.. -.|.|||..--..+.+++. -..|.+|+||+ .+|+++ .|+.|.+||+++.
T Consensus 154 d-------------h~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~ 220 (433)
T KOG0268|consen 154 D-------------HHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA 220 (433)
T ss_pred c-------------cccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC
Confidence 1 1101111111 3599999999999999987 45799999984 788885 8999999999998
Q ss_pred ceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchh
Q 005349 166 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (701)
Q Consensus 166 ~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk 245 (701)
..++.+..-. ..|.++++| =||
T Consensus 221 ~Pl~KVi~~m-------------RTN~IswnP--eaf------------------------------------------- 242 (433)
T KOG0268|consen 221 SPLKKVILTM-------------RTNTICWNP--EAF------------------------------------------- 242 (433)
T ss_pred Cccceeeeec-------------cccceecCc--ccc-------------------------------------------
Confidence 8776664321 112232221 011
Q ss_pred chhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC-cEEEEeecCCCCe
Q 005349 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPI 324 (701)
Q Consensus 246 ~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~~H~~~I 324 (701)
.|+.++.|..+..+|+... +++..+++|.+.|
T Consensus 243 -----------------------------------------------nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV 275 (433)
T KOG0268|consen 243 -----------------------------------------------NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV 275 (433)
T ss_pred -----------------------------------------------ceeeccccccceehhhhhhcccchhhcccceeE
Confidence 1334567888999998874 5788899999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcE
Q 005349 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 404 (701)
Q Consensus 325 s~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI 404 (701)
..+.|||.|+-++|||.|.+ ||||.+..+. -+.+|--+|-. .|.|+.||.|++|+.+||+|+.|
T Consensus 276 ~dVdfsptG~EfvsgsyDks-IRIf~~~~~~------------SRdiYhtkRMq---~V~~Vk~S~Dskyi~SGSdd~nv 339 (433)
T KOG0268|consen 276 MDVDFSPTGQEFVSGSYDKS-IRIFPVNHGH------------SRDIYHTKRMQ---HVFCVKYSMDSKYIISGSDDGNV 339 (433)
T ss_pred EEeccCCCcchhccccccce-EEEeecCCCc------------chhhhhHhhhh---eeeEEEEeccccEEEecCCCcce
Confidence 99999999999999999976 9999988651 13344333322 39999999999999999999999
Q ss_pred EEEecCCC
Q 005349 405 HLFAINPL 412 (701)
Q Consensus 405 ~Iwdl~~~ 412 (701)
++|.-+..
T Consensus 340 RlWka~As 347 (433)
T KOG0268|consen 340 RLWKAKAS 347 (433)
T ss_pred eeeecchh
Confidence 99997654
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.74 E-value=4.6e-17 Score=174.35 Aligned_cols=198 Identities=18% Similarity=0.284 Sum_probs=143.1
Q ss_pred CCCcEEEEEECCCCcEEEEEec-CCCEEEEEecC--CEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcc
Q 005349 114 SVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 189 (701)
Q Consensus 114 ~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~--~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~ 189 (701)
+.++.+|||+. .|.++.+|.+ +.+|.++++|+ .+|+. ..|+++.+||..+++..+.+.-+..+
T Consensus 254 ~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~------------ 320 (524)
T KOG0273|consen 254 SEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP------------ 320 (524)
T ss_pred ecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC------------
Confidence 35689999997 6777888876 78999999984 44554 77999999999998876665443210
Q ss_pred cceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccc
Q 005349 190 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 269 (701)
Q Consensus 190 ~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~ 269 (701)
++.-.|.-
T Consensus 321 ----~lDVdW~~-------------------------------------------------------------------- 328 (524)
T KOG0273|consen 321 ----ALDVDWQS-------------------------------------------------------------------- 328 (524)
T ss_pred ----ccceEEec--------------------------------------------------------------------
Confidence 00001110
Q ss_pred cCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005349 270 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF 349 (701)
Q Consensus 270 ~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iw 349 (701)
+..|++...||.|+|+-+...+++.+|.+|.++|++|.|+|.|.+|+|||+|+| ++||
T Consensus 329 ---------------------~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiW 386 (524)
T KOG0273|consen 329 ---------------------NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIW 386 (524)
T ss_pred ---------------------CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEee
Confidence 113445567899999999999999999999999999999999999999999998 8999
Q ss_pred EcCCCCC-------------------CCC---------CccCCCCce---------eEEEEEeccCCcccEEEEEEcCCC
Q 005349 350 KIIPGIL-------------------GTS---------SACDAGTSY---------VHLYRLQRGLTNAVIQDISFSDDS 392 (701)
Q Consensus 350 dl~~~~~-------------------~~~---------s~~~~~~~~---------~~l~~l~rG~~~a~I~~iaFSpDg 392 (701)
....... ++. .+....... .+++.|.++ ...|++++|||||
T Consensus 387 s~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvafS~~g 464 (524)
T KOG0273|consen 387 SMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAFSPNG 464 (524)
T ss_pred ecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEecCCC
Confidence 8544310 000 001111222 344444332 3459999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCCceeecC
Q 005349 393 NWIMISSSRGTSHLFAINPLGGSVNFQP 420 (701)
Q Consensus 393 ~~lAsgS~dgTI~Iwdl~~~g~~~~~~~ 420 (701)
+|+|+|+.||.||||++..+.-....++
T Consensus 465 ~ylAsGs~dg~V~iws~~~~~l~~s~~~ 492 (524)
T KOG0273|consen 465 RYLASGSLDGCVHIWSTKTGKLVKSYQG 492 (524)
T ss_pred cEEEecCCCCeeEeccccchheeEeecC
Confidence 9999999999999999987654444444
No 30
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.74 E-value=5.7e-16 Score=157.18 Aligned_cols=225 Identities=12% Similarity=0.220 Sum_probs=159.5
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
...|..+.+..+++||++. ++....+-.|-.-|-+++|.|+.. - +|+++
T Consensus 76 ~~alS~swD~~lrlWDl~~-g~~t~~f~GH~~dVlsva~s~dn~-------------q---ivSGS-------------- 124 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLAT-GESTRRFVGHTKDVLSVAFSTDNR-------------Q---IVSGS-------------- 124 (315)
T ss_pred ceEEeccccceEEEEEecC-CcEEEEEEecCCceEEEEecCCCc-------------e---eecCC--------------
Confidence 4556667788899999997 577777888999999999987431 1 24432
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec--CCCEEEEEecCC----EEEE-EeCCEEEEEECCCCceeEE
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF--RSPIYSVRCSSR----VVAI-CQAAQVHCFDAATLEIEYA 170 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f--~s~V~sV~~s~~----~LaV-a~~~~I~iwDl~t~~~~~t 170 (701)
-++|+++|+...+......+- +..|.+|+|+++ +++. +-|+++++||+++.+...+
T Consensus 125 -----------------rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~ 187 (315)
T KOG0279|consen 125 -----------------RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT 187 (315)
T ss_pred -----------------CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc
Confidence 238999999976544333333 668999999754 3443 6789999999999987766
Q ss_pred EecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhce
Q 005349 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (701)
Q Consensus 171 l~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~g 250 (701)
+.+|.. + .+.+++| |+ |.
T Consensus 188 ~~gh~~---~---------v~t~~vS--------------------pD--------------Gs---------------- 205 (315)
T KOG0279|consen 188 FIGHSG---Y---------VNTVTVS--------------------PD--------------GS---------------- 205 (315)
T ss_pred cccccc---c---------EEEEEEC--------------------CC--------------CC----------------
Confidence 655421 1 1222221 11 10
Q ss_pred eEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEc
Q 005349 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD 330 (701)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFS 330 (701)
..++++.||.+.+||+..++.+..| .|...|.+++|+
T Consensus 206 ------------------------------------------lcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fs 242 (315)
T KOG0279|consen 206 ------------------------------------------LCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFS 242 (315)
T ss_pred ------------------------------------------EEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEec
Confidence 1234567899999999999987666 466799999999
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe---ccC--C--cccEEEEEEcCCCCEEEEEeCCCc
Q 005349 331 PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---RGL--T--NAVIQDISFSDDSNWIMISSSRGT 403 (701)
Q Consensus 331 PdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~---rG~--~--~a~I~~iaFSpDg~~lAsgS~dgT 403 (701)
|+-..|+.+-. +.|+|||+.+. .++.+|+ -|. . ...-.+++||+||+.|.+|-.|+.
T Consensus 243 pnrywL~~at~--~sIkIwdl~~~--------------~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 243 PNRYWLCAATA--TSIKIWDLESK--------------AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred CCceeEeeccC--CceEEEeccch--------------hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 99998887764 45999999876 2322221 111 0 112467899999999999999999
Q ss_pred EEEEecCC
Q 005349 404 SHLFAINP 411 (701)
Q Consensus 404 I~Iwdl~~ 411 (701)
|++|.+..
T Consensus 307 irv~qv~~ 314 (315)
T KOG0279|consen 307 IRVWQVAK 314 (315)
T ss_pred EEEEEeec
Confidence 99998854
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=4.5e-17 Score=178.85 Aligned_cols=208 Identities=13% Similarity=0.198 Sum_probs=163.5
Q ss_pred cEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
+.|+|||.+|...|++++. .-||++.+|- ++.+++ +.|.+|+||+..|++++.+++.|++..
T Consensus 35 G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyI-------------- 100 (794)
T KOG0276|consen 35 GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYI-------------- 100 (794)
T ss_pred CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccce--------------
Confidence 6799999999999999987 5699998884 566766 567799999999999999999886521
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
|.||.. |+ ++
T Consensus 101 -----R~iavH-------------Pt-~P--------------------------------------------------- 110 (794)
T KOG0276|consen 101 -----RSIAVH-------------PT-LP--------------------------------------------------- 110 (794)
T ss_pred -----eeeeec-------------CC-CC---------------------------------------------------
Confidence 223321 11 00
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC-cEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEE
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFK 350 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwd 350 (701)
.+.++++|-+|++||.+.+ .+.++|.+|++.|.+++|+| |-..+|+||-|+| |+||.
T Consensus 111 --------------------~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT-VKVWs 169 (794)
T KOG0276|consen 111 --------------------YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT-VKVWS 169 (794)
T ss_pred --------------------eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc-EEEEE
Confidence 1234567889999999875 67889999999999999999 7889999999988 99999
Q ss_pred cCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC--CCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcccc
Q 005349 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTK 428 (701)
Q Consensus 351 l~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp--Dg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~~~~~ 428 (701)
+... .+.++|. ||... |.|++|=+ |-.+|++|++|.|++|||+.+..+..++.+|..+++..
T Consensus 170 lgs~--------------~~nfTl~-gHekG-VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v 233 (794)
T KOG0276|consen 170 LGSP--------------HPNFTLE-GHEKG-VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFV 233 (794)
T ss_pred cCCC--------------CCceeee-ccccC-cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEE
Confidence 9765 5567775 76543 99999976 56799999999999999999999999999999876642
Q ss_pred --c-------CCCcccccccCCCCCC
Q 005349 429 --H-------GAMAKSGVRWPPNLGL 445 (701)
Q Consensus 429 --~-------~~~~~~~~~~~~~s~~ 445 (701)
| .-+=+..+|.|+.++-
T Consensus 234 ~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred EecCCCcEEEEecCCccEEEecCcce
Confidence 2 1233455676666554
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.74 E-value=8.8e-18 Score=177.20 Aligned_cols=225 Identities=17% Similarity=0.312 Sum_probs=167.1
Q ss_pred CCcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 17 ~~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
.|++|..++.+-|.+|+.... ++..++-.||.+|++++++++. .-++.++.
T Consensus 108 GRRLltgs~SGEFtLWNg~~f-nFEtilQaHDs~Vr~m~ws~~g---------------~wmiSgD~------------- 158 (464)
T KOG0284|consen 108 GRRLLTGSQSGEFTLWNGTSF-NFETILQAHDSPVRTMKWSHNG---------------TWMISGDK------------- 158 (464)
T ss_pred CceeEeecccccEEEecCcee-eHHHHhhhhcccceeEEEccCC---------------CEEEEcCC-------------
Confidence 377777777778999998653 4555667899999999998653 12233331
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe-c-CCCEEEEEecC---CEEEEEeCCEEEEEECCCCceeEEE
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-F-RSPIYSVRCSS---RVVAICQAAQVHCFDAATLEIEYAI 171 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~-f-~s~V~sV~~s~---~~LaVa~~~~I~iwDl~t~~~~~tl 171 (701)
.++||.|+..-.. |+.++ + ...|++++|++ +++..+.|++|+|||....+....|
T Consensus 159 -------------------gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL 218 (464)
T KOG0284|consen 159 -------------------GGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL 218 (464)
T ss_pred -------------------CceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee
Confidence 1789999986554 44443 3 36899999973 5666678999999999887766666
Q ss_pred ecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhcee
Q 005349 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (701)
Q Consensus 172 ~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl 251 (701)
.+|. +-+ +.++. ...|
T Consensus 219 ~GHg--------------wdV-----ksvdW---------------------------------------HP~k------ 234 (464)
T KOG0284|consen 219 RGHG--------------WDV-----KSVDW---------------------------------------HPTK------ 234 (464)
T ss_pred ccCC--------------CCc-----ceecc---------------------------------------CCcc------
Confidence 5541 111 11111 1111
Q ss_pred EEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC
Q 005349 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (701)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP 331 (701)
+.+++++.|..|++||.++++++.++.+|+..|..+.|+|
T Consensus 235 ----------------------------------------gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~ 274 (464)
T KOG0284|consen 235 ----------------------------------------GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP 274 (464)
T ss_pred ----------------------------------------ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcC
Confidence 1233455677999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecC
Q 005349 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 332 dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~ 410 (701)
+|.+|+|+|.|. .+++||+++. ..+..+ |||. ..|.+++|+| .-..|.+|+.||.|..|.+.
T Consensus 275 n~N~Llt~skD~-~~kv~DiR~m--------------kEl~~~-r~Hk-kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 275 NGNWLLTGSKDQ-SCKVFDIRTM--------------KELFTY-RGHK-KDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred CCCeeEEccCCc-eEEEEehhHh--------------HHHHHh-hcch-hhheeeccccccccceeeccCCCceEEEecc
Confidence 999999999996 5999999854 344454 5664 3599999999 66789999999999999987
Q ss_pred C
Q 005349 411 P 411 (701)
Q Consensus 411 ~ 411 (701)
.
T Consensus 338 ~ 338 (464)
T KOG0284|consen 338 L 338 (464)
T ss_pred c
Confidence 3
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.73 E-value=1.4e-16 Score=178.12 Aligned_cols=250 Identities=17% Similarity=0.210 Sum_probs=171.9
Q ss_pred cEEEEEECCCCcEEEEEe-cCCCEEEEEecC---CEEEEEe-CCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccc
Q 005349 117 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS---RVVAICQ-AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 191 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~-f~s~V~sV~~s~---~~LaVa~-~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~ 191 (701)
..+.|||.++.+.++.|- +...|.+++|-+ +.|||+. ...+++||..++.|. -+.+|...
T Consensus 303 Qnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~-------------- 367 (775)
T KOG0319|consen 303 QNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEA-------------- 367 (775)
T ss_pred ceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhh--------------
Confidence 458999999999988775 588999999954 7888864 579999999999876 56666431
Q ss_pred eeeec----cceEEEcCCC--ceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccc
Q 005349 192 PLAVG----PRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQY 265 (701)
Q Consensus 192 piAls----~r~LAya~~~--~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y 265 (701)
.++|. ..|||.++++ ++.| ++-...+|.+--+ ...|+.
T Consensus 368 vlSL~~~~~g~llat~sKD~svilW---------------------------r~~~~~~~~~~~a-~~~gH~-------- 411 (775)
T KOG0319|consen 368 VLSLDVWSSGDLLATGSKDKSVILW---------------------------RLNNNCSKSLCVA-QANGHT-------- 411 (775)
T ss_pred eeeeeecccCcEEEEecCCceEEEE---------------------------EecCCcchhhhhh-hhcccc--------
Confidence 12222 2467766543 2333 0000000000000 000000
Q ss_pred cccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc-----EE----EEeecCCCCeEEEEEcCCCCEE
Q 005349 266 CSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-----VI----AQFRAHKSPISALCFDPSGILL 336 (701)
Q Consensus 266 ~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~-----~i----~~~~~H~~~Is~laFSPdG~lL 336 (701)
+++-.. ...+ .| -.-|++.++|+++++|++...+ .+ ....+|...|+||+.+|+.+++
T Consensus 412 ---------~svgav-a~~~-~~--asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLi 478 (775)
T KOG0319|consen 412 ---------NSVGAV-AGSK-LG--ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLI 478 (775)
T ss_pred ---------ccccee-eecc-cC--ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceE
Confidence 000000 0000 00 0124677899999999998621 11 1335899999999999999999
Q ss_pred EEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCce
Q 005349 337 VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV 416 (701)
Q Consensus 337 aTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~ 416 (701)
||||.|.+ .+||++... +++..| +||+. .|+|+.|+|..+.+|++|.|+||+||.|+++.+.-
T Consensus 479 AT~SqDkt-aKiW~le~~--------------~l~~vL-sGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk 541 (775)
T KOG0319|consen 479 ATGSQDKT-AKIWDLEQL--------------RLLGVL-SGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK 541 (775)
T ss_pred Eecccccc-eeeecccCc--------------eEEEEe-eCCcc-ceEEEEeccccceeEeccCCceEEEEEeccceeee
Confidence 99999987 899999865 677777 57765 39999999999999999999999999999999999
Q ss_pred eecCCCCCccccc---------CCCcccccccCCCCCCCC
Q 005349 417 NFQPTDANFTTKH---------GAMAKSGVRWPPNLGLQM 447 (701)
Q Consensus 417 ~~~~H~~~~~~~~---------~~~~~~~~~~~~~s~~~~ 447 (701)
+|.+|...+-+.. +.--+...+.|+.+.-++
T Consensus 542 T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 542 TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred eecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 9999987765532 334456677888887775
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.73 E-value=4.3e-16 Score=174.28 Aligned_cols=289 Identities=15% Similarity=0.214 Sum_probs=194.8
Q ss_pred CCcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 17 ~~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
..++|++-.+..+.++|.++..-...++. -.+.|..++++- | .+ ..|||++.+
T Consensus 293 ~~~~l~vtaeQnl~l~d~~~l~i~k~ivG-~ndEI~Dm~~lG-~------e~------~~laVATNs------------- 345 (775)
T KOG0319|consen 293 MSQLLLVTAEQNLFLYDEDELTIVKQIVG-YNDEILDMKFLG-P------EE------SHLAVATNS------------- 345 (775)
T ss_pred cCceEEEEccceEEEEEccccEEehhhcC-CchhheeeeecC-C------cc------ceEEEEeCC-------------
Confidence 47888888899999999887433333444 466788888873 1 12 247777752
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEE-ec-CCEEEE-EeCCEEEEEECCCCc----eeE
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVR-CS-SRVVAI-CQAAQVHCFDAATLE----IEY 169 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~-~s-~~~LaV-a~~~~I~iwDl~t~~----~~~ 169 (701)
..+|+|++.+-.|----.+...|.++. ++ +.+|+. +-|+++++|.+.... +..
T Consensus 346 --------------------~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a 405 (775)
T KOG0319|consen 346 --------------------PELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA 405 (775)
T ss_pred --------------------CceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence 459999998888763334567888988 33 557777 558899999774332 233
Q ss_pred EEecCCCccCCCCCCCCCcccceeee---ccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhc
Q 005349 170 AILTNPIVMGHPSAGGIGIGYGPLAV---GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (701)
Q Consensus 170 tl~t~~~~~~~~~~~~~~~~~~piAl---s~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~ 246 (701)
...+|.+. ++.++. ++.+++..+.+ .++..|-..-+|.
T Consensus 406 ~~~gH~~s------------vgava~~~~~asffvsvS~D---------------------------~tlK~W~l~~s~~ 446 (775)
T KOG0319|consen 406 QANGHTNS------------VGAVAGSKLGASFFVSVSQD---------------------------CTLKLWDLPKSKE 446 (775)
T ss_pred hhcccccc------------cceeeecccCccEEEEecCC---------------------------ceEEEecCCCccc
Confidence 33344331 222322 22444443322 2222211111111
Q ss_pred hhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEE
Q 005349 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISA 326 (701)
Q Consensus 247 la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~ 326 (701)
-+. -+.--.+|....+...-+.+.. ++. ...++++++|.+.+||++...+.+..|.+|+..|.|
T Consensus 447 ~~~--------~~~~~~~~t~~aHdKdIN~Vai-a~n-------dkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~ 510 (775)
T KOG0319|consen 447 TAF--------PIVLTCRYTERAHDKDINCVAI-APN-------DKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWC 510 (775)
T ss_pred ccc--------cceehhhHHHHhhcccccceEe-cCC-------CceEEecccccceeeecccCceEEEEeeCCccceEE
Confidence 110 0000111221112111122111 111 235788999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 005349 327 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 406 (701)
Q Consensus 327 laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~I 406 (701)
+.|+|..++|||||.|+| |+||.+.+. .|+.+|. ||+.+ |..++|-.+|+.|.++++||-++|
T Consensus 511 V~Fs~~dq~laT~SgD~T-vKIW~is~f--------------SClkT~e-GH~~a-Vlra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 511 VSFSKNDQLLATCSGDKT-VKIWSISTF--------------SCLKTFE-GHTSA-VLRASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred EEeccccceeEeccCCce-EEEEEeccc--------------eeeeeec-Cccce-eEeeeeeeCCcEEEeccCCCcEEE
Confidence 999999999999999987 999999987 7999985 77755 999999999999999999999999
Q ss_pred EecCCCCCceeecCCCCC
Q 005349 407 FAINPLGGSVNFQPTDAN 424 (701)
Q Consensus 407 wdl~~~g~~~~~~~H~~~ 424 (701)
|++++..+..++..|.+.
T Consensus 574 Wnikt~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 574 WNIKTNECEMTLDAHNDR 591 (775)
T ss_pred Eeccchhhhhhhhhccce
Confidence 999999999999999643
No 35
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.73 E-value=3.5e-16 Score=178.23 Aligned_cols=226 Identities=15% Similarity=0.224 Sum_probs=172.2
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
.+++...++..++|||+.+ +++...+-.|.+.|+++.+.+. + +++++
T Consensus 262 ~~lvsgS~D~t~rvWd~~s-g~C~~~l~gh~stv~~~~~~~~-----------------~-~~sgs-------------- 308 (537)
T KOG0274|consen 262 DKLVSGSTDKTERVWDCST-GECTHSLQGHTSSVRCLTIDPF-----------------L-LVSGS-------------- 308 (537)
T ss_pred CEEEEEecCCcEEeEecCC-CcEEEEecCCCceEEEEEccCc-----------------e-Eeecc--------------
Confidence 4444455588899999876 8899999999999999987541 1 12221
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe-cCCCEEEEEecCCEEEE-EeCCEEEEEECCCCceeEEEecCC
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNP 175 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~-f~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~ 175 (701)
.|++|++|++.++.+++++. +..+|++|.++..++++ +.|++|.+||+.+++++.++..|.
T Consensus 309 -----------------~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~ 371 (537)
T KOG0274|consen 309 -----------------RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT 371 (537)
T ss_pred -----------------CCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCc
Confidence 24899999999999999999 78999999999766654 789999999999999999998874
Q ss_pred CccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcC
Q 005349 176 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG 255 (701)
Q Consensus 176 ~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lG 255 (701)
.. +-+ |++..+
T Consensus 372 ~~------------V~s-------l~~~~~-------------------------------------------------- 382 (537)
T KOG0274|consen 372 GR------------VYS-------LIVDSE-------------------------------------------------- 382 (537)
T ss_pred ce------------EEE-------EEecCc--------------------------------------------------
Confidence 21 001 111100
Q ss_pred CccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC-cEEEEeecCCCCeEEEEEcCCCC
Q 005349 256 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGI 334 (701)
Q Consensus 256 d~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~~H~~~Is~laFSPdG~ 334 (701)
....++..|+.|++||+.++ +++..++.|.+-+..+.+ .++
T Consensus 383 ------------------------------------~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~ 424 (537)
T KOG0274|consen 383 ------------------------------------NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDN 424 (537)
T ss_pred ------------------------------------ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccc
Confidence 01122445789999999999 999999999998866554 589
Q ss_pred EEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 005349 335 LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (701)
Q Consensus 335 lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~ 414 (701)
+|++++.||+ |++||..++ .+++.+.-. ....|..+++. ...+++++.||++++||+.....
T Consensus 425 ~Lvs~~aD~~-Ik~WD~~~~--------------~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 425 FLVSSSADGT-IKLWDAEEG--------------ECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred eeEecccccc-EEEeecccC--------------ceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 9999999997 999999987 667776432 22348888887 46888999999999999987654
Q ss_pred ceee
Q 005349 415 SVNF 418 (701)
Q Consensus 415 ~~~~ 418 (701)
...+
T Consensus 487 ~~~l 490 (537)
T KOG0274|consen 487 IRTL 490 (537)
T ss_pred hhhh
Confidence 4433
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.73 E-value=2.7e-15 Score=180.33 Aligned_cols=181 Identities=15% Similarity=0.179 Sum_probs=134.6
Q ss_pred CcEEEEEECCCCcEEEEEec-CCCEEEEEec---CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCccc
Q 005349 116 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s---~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~ 190 (701)
+++|+|||+.+++.+.+++. ...|++|+|+ +.+|++ +.|++|++||+.+++++.++..+..
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~-------------- 619 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN-------------- 619 (793)
T ss_pred CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCC--------------
Confidence 38899999999999998864 6789999996 356665 5689999999999887777653210
Q ss_pred ceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccccc
Q 005349 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (701)
Q Consensus 191 ~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~ 270 (701)
.. .++|... +|.
T Consensus 620 -v~-----~v~~~~~--------------------------~g~------------------------------------ 631 (793)
T PLN00181 620 -IC-----CVQFPSE--------------------------SGR------------------------------------ 631 (793)
T ss_pred -eE-----EEEEeCC--------------------------CCC------------------------------------
Confidence 01 1122100 000
Q ss_pred CCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc-EEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005349 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF 349 (701)
Q Consensus 271 p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~-~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iw 349 (701)
.++.+..||.|++||+.+.+ .+..+.+|...|.+++|. ++.+|+|++.||+ |+||
T Consensus 632 ----------------------~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiW 687 (793)
T PLN00181 632 ----------------------SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLW 687 (793)
T ss_pred ----------------------EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEE
Confidence 12345678999999998765 577889999999999997 7889999999997 9999
Q ss_pred EcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 350 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 350 dl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
|+.....+. ....++.+ .|+. ..+.+++|++++++||+|+.|++|+||+....
T Consensus 688 d~~~~~~~~--------~~~~l~~~-~gh~-~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 688 DLSMSISGI--------NETPLHSF-MGHT-NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred eCCCCcccc--------CCcceEEE-cCCC-CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 997531000 11344555 4554 45899999999999999999999999997644
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.72 E-value=1.7e-16 Score=165.09 Aligned_cols=190 Identities=14% Similarity=0.249 Sum_probs=144.8
Q ss_pred CCcEEEEEECCCCcEEEEEe-cCCCEEEEEecCC---EEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCccc
Q 005349 115 VPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSSR---VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (701)
Q Consensus 115 ~~~tVriWdl~tg~~v~tL~-f~s~V~sV~~s~~---~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~ 190 (701)
.+++++|||+.||++..+|. +-..|+.|+++.+ ++.+..|++|+|||+...+.++..-+|-.
T Consensus 171 ~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS-------------- 236 (460)
T KOG0285|consen 171 ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS-------------- 236 (460)
T ss_pred CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccc--------------
Confidence 45999999999999999998 6789999999853 44557889999999998776655544411
Q ss_pred ceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccccc
Q 005349 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (701)
Q Consensus 191 ~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~ 270 (701)
+. | |-+++
T Consensus 237 ~V---------~---------------------------------------------------------------~L~lh 244 (460)
T KOG0285|consen 237 GV---------Y---------------------------------------------------------------CLDLH 244 (460)
T ss_pred ee---------E---------------------------------------------------------------EEecc
Confidence 00 1 00111
Q ss_pred CCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 005349 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 350 (701)
Q Consensus 271 p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwd 350 (701)
|.- ..++++..|.+++|||++++..+..|.+|+.+|..+.|.|-.-.++|||.|++ |++||
T Consensus 245 PTl------------------dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t-vrlWD 305 (460)
T KOG0285|consen 245 PTL------------------DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST-VRLWD 305 (460)
T ss_pred ccc------------------eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce-EEEee
Confidence 100 02334667889999999999999999999999999999997777999999998 99999
Q ss_pred cCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 005349 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 426 (701)
Q Consensus 351 l~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~~~ 426 (701)
+..+ +-+.++. ++.-.|.+++..|.-..+|++|.| .|+-|++....-..++.+|...+.
T Consensus 306 l~ag--------------kt~~tlt--~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iin 364 (460)
T KOG0285|consen 306 LRAG--------------KTMITLT--HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIIN 364 (460)
T ss_pred eccC--------------ceeEeee--cccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceee
Confidence 9987 4444442 223349999999999999999887 689999976655556777766554
No 38
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.72 E-value=1.4e-16 Score=170.40 Aligned_cols=139 Identities=12% Similarity=0.217 Sum_probs=116.3
Q ss_pred cccccCCCCeEEEEECC--CCcEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCcee
Q 005349 293 HFPDADNVGMVIVRDIV--SKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 369 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~--s~~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~ 369 (701)
.|.+...|+.+.|||++ +.++....++|+.+|.|++|+| ++.+|||||.|++ +++||++.. ..
T Consensus 242 lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL-------------~~ 307 (422)
T KOG0264|consen 242 LFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNL-------------NK 307 (422)
T ss_pred hheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhc-------------cc
Confidence 34456788999999999 5667778889999999999999 7899999999998 899999875 25
Q ss_pred EEEEEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCcee-----------ecCCCCCcccccCCCccccc
Q 005349 370 HLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVN-----------FQPTDANFTTKHGAMAKSGV 437 (701)
Q Consensus 370 ~l~~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~~g~~~~-----------~~~H~~~~~~~~~~~~~~~~ 437 (701)
+++.+. |+. ..|.+|.||| ....||+++.|++++|||+..-|+... +..|.+|+....+.+||+.-
T Consensus 308 ~lh~~e-~H~-dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e 385 (422)
T KOG0264|consen 308 PLHTFE-GHE-DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE 385 (422)
T ss_pred Cceecc-CCC-cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCC
Confidence 677874 443 4599999999 567899999999999999998877754 35688888888899999998
Q ss_pred ccCCCCCCCC
Q 005349 438 RWPPNLGLQM 447 (701)
Q Consensus 438 ~~~~~s~~~~ 447 (701)
+|--.|..++
T Consensus 386 PW~I~SvaeD 395 (422)
T KOG0264|consen 386 PWTIASVAED 395 (422)
T ss_pred CeEEEEecCC
Confidence 8887777775
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.72 E-value=4.1e-16 Score=162.31 Aligned_cols=226 Identities=17% Similarity=0.256 Sum_probs=177.1
Q ss_pred CCCcEEEEecc-CCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 16 ATRRVLLLGYR-SGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 16 ~~~~vL~~g~~-~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
+....|+.|.. +.++|||+++ +.+...+.+|-..|+-+++.+ .+|.|--|+++
T Consensus 161 P~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~--------------rHpYlFs~ged----------- 214 (460)
T KOG0285|consen 161 PGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSK--------------RHPYLFSAGED----------- 214 (460)
T ss_pred CCceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecc--------------cCceEEEecCC-----------
Confidence 34666777665 4599999997 677777888999999999875 34777655531
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecC--CEEEE-EeCCEEEEEECCCCceeEE
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEIEYA 170 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~--~~LaV-a~~~~I~iwDl~t~~~~~t 170 (701)
+.|+-|||+.++.++.+.. =+.|++++.-+ ++|+. +.|.+|+|||++|-..+++
T Consensus 215 ----------------------k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~ 272 (460)
T KOG0285|consen 215 ----------------------KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV 272 (460)
T ss_pred ----------------------CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE
Confidence 7899999999998887654 57899999964 55655 5688999999999999999
Q ss_pred EecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhce
Q 005349 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (701)
Q Consensus 171 l~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~g 250 (701)
+.+|.++ ++ +-++-+
T Consensus 273 l~GH~~~---------------V~---~V~~~~----------------------------------------------- 287 (460)
T KOG0285|consen 273 LSGHTNP---------------VA---SVMCQP----------------------------------------------- 287 (460)
T ss_pred ecCCCCc---------------ce---eEEeec-----------------------------------------------
Confidence 9887542 21 000000
Q ss_pred eEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEc
Q 005349 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD 330 (701)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFS 330 (701)
.+..+++++.|++|++||+..++...++..|...|.|++.+
T Consensus 288 ---------------------------------------~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lh 328 (460)
T KOG0285|consen 288 ---------------------------------------TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLH 328 (460)
T ss_pred ---------------------------------------CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecC
Confidence 01133456789999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 331 PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 331 PdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
|.-.++|++|.| +|+-|++..+ ..+..+ .|+ ++.|.+++-..|| ++.+|++.|++..||..
T Consensus 329 P~e~~fASas~d--nik~w~~p~g--------------~f~~nl-sgh-~~iintl~~nsD~-v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 329 PKENLFASASPD--NIKQWKLPEG--------------EFLQNL-SGH-NAIINTLSVNSDG-VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred CchhhhhccCCc--cceeccCCcc--------------chhhcc-ccc-cceeeeeeeccCc-eEEEcCCceEEEEEecC
Confidence 999999999998 3899999887 455555 344 4669999999887 77799999999999997
Q ss_pred CC
Q 005349 411 PL 412 (701)
Q Consensus 411 ~~ 412 (701)
+.
T Consensus 390 sg 391 (460)
T KOG0285|consen 390 SG 391 (460)
T ss_pred cC
Confidence 64
No 40
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.72 E-value=4.7e-16 Score=177.22 Aligned_cols=231 Identities=14% Similarity=0.160 Sum_probs=173.3
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.+....++..+++||+.+.-.+..-+..|.|.|..++|... + ++| +.++
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~--------~------~~l--vsgS-------------- 268 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG--------G------DKL--VSGS-------------- 268 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC--------C------CEE--EEEe--------------
Confidence 455566666778899998743333326689999999998521 1 233 2322
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecCCEEEE-EeCCEEEEEECCCCceeEEEecCC
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNP 175 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~ 175 (701)
.+.|+|+||+.+|+|+++|.. .+.|+.+..-+.+++. +.|.+|++||+.++.++.++..|.
T Consensus 269 -----------------~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~ 331 (537)
T KOG0274|consen 269 -----------------TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHT 331 (537)
T ss_pred -----------------cCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEecccc
Confidence 238899999999999999995 6788888877666655 689999999999999998887652
Q ss_pred CccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcC
Q 005349 176 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG 255 (701)
Q Consensus 176 ~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lG 255 (701)
. ++ +-+.+.
T Consensus 332 ~---------------~V----~~v~~~---------------------------------------------------- 340 (537)
T KOG0274|consen 332 G---------------PV----NCVQLD---------------------------------------------------- 340 (537)
T ss_pred c---------------cE----EEEEec----------------------------------------------------
Confidence 1 11 011111
Q ss_pred CccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCE
Q 005349 256 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGIL 335 (701)
Q Consensus 256 d~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~l 335 (701)
...++++..||+|+|||+.++++++.+++|+..|.++.|++. ..
T Consensus 341 -----------------------------------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~ 384 (537)
T KOG0274|consen 341 -----------------------------------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NR 384 (537)
T ss_pred -----------------------------------CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ce
Confidence 001234567899999999999999999999999999998877 89
Q ss_pred EEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCc
Q 005349 336 LVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 336 LaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
+.+||.|++ |++||+.+. ..+++.|. ++. ..+.++.+ .+++|.+++.|++|++||++.++..
T Consensus 385 ~~Sgs~D~~-IkvWdl~~~-------------~~c~~tl~-~h~-~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 385 LLSGSLDTT-IKVWDLRTK-------------RKCIHTLQ-GHT-SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECL 446 (537)
T ss_pred EEeeeeccc-eEeecCCch-------------hhhhhhhc-CCc-cccccccc--ccceeEeccccccEEEeecccCcee
Confidence 999999976 999999875 14666663 443 34555544 6789999999999999999999888
Q ss_pred eeecC
Q 005349 416 VNFQP 420 (701)
Q Consensus 416 ~~~~~ 420 (701)
.++.+
T Consensus 447 ~~~~~ 451 (537)
T KOG0274|consen 447 RTLEG 451 (537)
T ss_pred eeecc
Confidence 88877
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=3e-16 Score=177.66 Aligned_cols=266 Identities=15% Similarity=0.251 Sum_probs=173.2
Q ss_pred CCCcEEEEeccCC-eEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 16 ATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 16 ~~~~vL~~g~~~g-~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
+.|..++.+..+| +|+||-.- +-+.+-+-.||||||-+.|=|. .|+. +++|.
T Consensus 19 P~rPwILtslHsG~IQlWDYRM-~tli~rFdeHdGpVRgv~FH~~--------------qplF--VSGGD---------- 71 (1202)
T KOG0292|consen 19 PKRPWILTSLHSGVIQLWDYRM-GTLIDRFDEHDGPVRGVDFHPT--------------QPLF--VSGGD---------- 71 (1202)
T ss_pred CCCCEEEEeecCceeeeehhhh-hhHHhhhhccCCccceeeecCC--------------CCeE--EecCC----------
Confidence 5688899998887 89999875 4455566679999999988653 2443 34331
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecC---CEEEEEeCCEEEEEECCCCceeEE
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---RVVAICQAAQVHCFDAATLEIEYA 170 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~---~~LaVa~~~~I~iwDl~t~~~~~t 170 (701)
+-+|++|+.++.+|+.+|.. -.-|+.+.|.. =+|..+.|.+|+||+-.+..++.+
T Consensus 72 ---------------------DykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iav 130 (1202)
T KOG0292|consen 72 ---------------------DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAV 130 (1202)
T ss_pred ---------------------ccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEE
Confidence 17899999999999999875 57899999964 456667788999999999999999
Q ss_pred EecCCCccCCCCCCCCCcccceeeeccceEEEcC-CCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhc
Q 005349 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSG-SPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (701)
Q Consensus 171 l~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~-~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~ 249 (701)
+.+|.-.. |+- .|-+ .++++| +|-+.+|..|. .+
T Consensus 131 ltGHnHYV--------------McA-----qFhptEDlIVS-------------------aSLDQTVRVWD-------is 165 (1202)
T KOG0292|consen 131 LTGHNHYV--------------MCA-----QFHPTEDLIVS-------------------ASLDQTVRVWD-------IS 165 (1202)
T ss_pred EecCceEE--------------Eee-----ccCCccceEEE-------------------ecccceEEEEe-------ec
Confidence 98874211 110 1111 111111 01112222111 00
Q ss_pred eeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEE
Q 005349 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (701)
Q Consensus 250 gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laF 329 (701)
||+. ++.++. +.++... | ..+..-++--..--+...+.+|.-.|+-++|
T Consensus 166 GLRk-------------------k~~~pg-~~e~~~~-~----------~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 166 GLRK-------------------KNKAPG-SLEDQMR-G----------QQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred chhc-------------------cCCCCC-Cchhhhh-c----------cccchhhcCCcCeeeeeeecccccccceEEe
Confidence 1110 000000 0000000 0 0000001100001133567899999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 330 DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 330 SPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
.|.--++++|++|. .|++|..... ..+.+-++ |||.+ .|.++-|.|....+.+.|.|++|+|||+
T Consensus 215 hpTlpliVSG~DDR-qVKlWrmnet------------KaWEvDtc-rgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDR-QVKLWRMNET------------KAWEVDTC-RGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred cCCcceEEecCCcc-eeeEEEeccc------------cceeehhh-hcccC-CcceEEecCccceeEecCCCccEEEEec
Confidence 99999999999995 5999998754 23444444 78765 5999999999999999999999999999
Q ss_pred CCCCCceeecC
Q 005349 410 NPLGGSVNFQP 420 (701)
Q Consensus 410 ~~~g~~~~~~~ 420 (701)
.+..+..+|+.
T Consensus 280 ~kRt~v~tfrr 290 (1202)
T KOG0292|consen 280 TKRTSVQTFRR 290 (1202)
T ss_pred ccccceeeeec
Confidence 99888888854
No 42
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.71 E-value=1.4e-16 Score=159.32 Aligned_cols=185 Identities=22% Similarity=0.337 Sum_probs=145.0
Q ss_pred CCcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 17 ~~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
...+|..|...-++|||++......+-++.|.|.||.+.+.- .|. -+|- ..
T Consensus 112 s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~--------eD~-----~iLS-Sa--------------- 162 (334)
T KOG0278|consen 112 SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH--------EDK-----CILS-SA--------------- 162 (334)
T ss_pred chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec--------cCc-----eEEe-ec---------------
Confidence 367778888888999999987777788888999999887752 111 1111 11
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEEeCCEEEEEECCCCceeEEEecC
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTN 174 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa~~~~I~iwDl~t~~~~~tl~t~ 174 (701)
.+++||+||.+||..+++|.|+++|.++..+ +++|.++....|.+||+.++..+....-
T Consensus 163 ------------------dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~- 223 (334)
T KOG0278|consen 163 ------------------DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM- 223 (334)
T ss_pred ------------------cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-
Confidence 2388999999999999999999999999996 7899999999999999999987655432
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEc
Q 005349 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (701)
Q Consensus 175 ~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~l 254 (701)
|+. + +.++
T Consensus 224 --P~n----------V----------~SAS-------------------------------------------------- 231 (334)
T KOG0278|consen 224 --PCN----------V----------ESAS-------------------------------------------------- 231 (334)
T ss_pred --ccc----------c----------cccc--------------------------------------------------
Confidence 110 0 0000
Q ss_pred CCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEe-ecCCCCeEEEEEcCCC
Q 005349 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-RAHKSPISALCFDPSG 333 (701)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~-~~H~~~Is~laFSPdG 333 (701)
+.|+. ..|+.++.|+.++.||..++..+..+ ++|-+||-||.|+|||
T Consensus 232 --------------L~P~k------------------~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 232 --------------LHPKK------------------EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG 279 (334)
T ss_pred --------------ccCCC------------------ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC
Confidence 01110 12445678999999999999998886 8999999999999999
Q ss_pred CEEEEEeCCCcEEEEEEcCCC
Q 005349 334 ILLVTASVQGHNINIFKIIPG 354 (701)
Q Consensus 334 ~lLaTaS~dGt~I~Iwdl~~~ 354 (701)
.+.|+||.||+ ||||...++
T Consensus 280 E~yAsGSEDGT-irlWQt~~~ 299 (334)
T KOG0278|consen 280 ELYASGSEDGT-IRLWQTTPG 299 (334)
T ss_pred ceeeccCCCce-EEEEEecCC
Confidence 99999999998 999998876
No 43
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.71 E-value=2e-16 Score=167.34 Aligned_cols=225 Identities=15% Similarity=0.235 Sum_probs=170.3
Q ss_pred CCCcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 005349 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (701)
Q Consensus 16 ~~~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~ 95 (701)
..+.+|+.++++..++|+++. ......++.|.+.|.++++... + ..+++++
T Consensus 230 ~~~~~iAas~d~~~r~Wnvd~-~r~~~TLsGHtdkVt~ak~~~~------------~----~~vVsgs------------ 280 (459)
T KOG0288|consen 230 DNKHVIAASNDKNLRLWNVDS-LRLRHTLSGHTDKVTAAKFKLS------------H----SRVVSGS------------ 280 (459)
T ss_pred CCceEEeecCCCceeeeeccc-hhhhhhhcccccceeeehhhcc------------c----cceeecc------------
Confidence 448899999999999999997 5677888899999999987531 1 1234431
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEecCCEEEEE-eCCEEEEEECCCCceeEEEecC
Q 005349 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAIC-QAAQVHCFDAATLEIEYAILTN 174 (701)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s~~~LaVa-~~~~I~iwDl~t~~~~~tl~t~ 174 (701)
.+.+|++||+..+.|.+++-+-+.+.+|.++...+..+ .|++|++||+++..+.+++...
T Consensus 281 -------------------~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g 341 (459)
T KOG0288|consen 281 -------------------ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLG 341 (459)
T ss_pred -------------------ccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecC
Confidence 34899999999999999999999999999986555553 6899999999998877776543
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEc
Q 005349 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (701)
Q Consensus 175 ~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~l 254 (701)
.. +..+.++. . |
T Consensus 342 g~-------------vtSl~ls~--------------~--------------------g--------------------- 353 (459)
T KOG0288|consen 342 GR-------------VTSLDLSM--------------D--------------------G--------------------- 353 (459)
T ss_pred cc-------------eeeEeecc--------------C--------------------C---------------------
Confidence 10 01111100 0 0
Q ss_pred CCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCC----CCeEEEEEc
Q 005349 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK----SPISALCFD 330 (701)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~----~~Is~laFS 330 (701)
-.+.+...|.++.+.|+.+......|.+-. +.++.+.||
T Consensus 354 -------------------------------------~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 354 -------------------------------------LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred -------------------------------------eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 011122456788999999988888877532 458899999
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005349 331 PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 331 PdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwd 408 (701)
|+|.|+|+||.||. |+||++.++ ++...+.-...++.|.+++|+|-|+.|++++.++.+.+|.
T Consensus 397 pd~~YvaAGS~dgs-v~iW~v~tg--------------KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 397 PDGSYVAAGSADGS-VYIWSVFTG--------------KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCceeeeccCCCc-EEEEEccCc--------------eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999997 899999987 4555554333344599999999999999999999999993
No 44
>PTZ00421 coronin; Provisional
Probab=99.71 E-value=1.1e-14 Score=165.22 Aligned_cols=222 Identities=14% Similarity=0.116 Sum_probs=150.1
Q ss_pred CCeEEEEecCCCCeeE---EeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCC
Q 005349 27 SGFQVWDVEEADNVHD---LVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTS 103 (701)
Q Consensus 27 ~g~qVwdv~~~~~~~e---lvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~ 103 (701)
+|+.|+..+..|.... ++..|.++|..+.+.|.. ..+|+.++.
T Consensus 51 gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d-------------~~~LaSgS~--------------------- 96 (493)
T PTZ00421 51 GSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD-------------PQKLFTASE--------------------- 96 (493)
T ss_pred CceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCC-------------CCEEEEEeC---------------------
Confidence 3444544444343332 566789999999997620 124554432
Q ss_pred CCCCCCCCCCCCCcEEEEEECCCCc-------EEEEEec-CCCEEEEEecC---CEEEE-EeCCEEEEEECCCCceeEEE
Q 005349 104 ANYHDLGNGSSVPTVVHFYSLRSQS-------YVHMLKF-RSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEYAI 171 (701)
Q Consensus 104 ~~~~~~~~~~~~~~tVriWdl~tg~-------~v~tL~f-~s~V~sV~~s~---~~LaV-a~~~~I~iwDl~t~~~~~tl 171 (701)
+++|++||+.++. .+.+|.. ...|..|+|++ ++|++ +.|++|+|||+.+++...++
T Consensus 97 ------------DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l 164 (493)
T PTZ00421 97 ------------DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI 164 (493)
T ss_pred ------------CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE
Confidence 2789999998763 4566653 57899999974 46766 67899999999999877777
Q ss_pred ecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhcee
Q 005349 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (701)
Q Consensus 172 ~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl 251 (701)
..|... + ..|++.. + |.
T Consensus 165 ~~h~~~---------------V----~sla~sp-------------d--------------G~----------------- 181 (493)
T PTZ00421 165 KCHSDQ---------------I----TSLEWNL-------------D--------------GS----------------- 181 (493)
T ss_pred cCCCCc---------------e----EEEEEEC-------------C--------------CC-----------------
Confidence 655320 1 1122321 0 00
Q ss_pred EEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCC-eEEEEEc
Q 005349 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSP-ISALCFD 330 (701)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~-Is~laFS 330 (701)
.++++..||+|+|||+.+++.+..+.+|.+. +..+.|.
T Consensus 182 -----------------------------------------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~ 220 (493)
T PTZ00421 182 -----------------------------------------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA 220 (493)
T ss_pred -----------------------------------------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEc
Confidence 1234567899999999999999999999875 4568899
Q ss_pred CCCCEEEEEe----CCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEe-CCCcEE
Q 005349 331 PSGILLVTAS----VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSH 405 (701)
Q Consensus 331 PdG~lLaTaS----~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS-~dgTI~ 405 (701)
+++.+|+|++ .|++ |+|||++... ..+... .......+....|++|+++|++++ .|++|+
T Consensus 221 ~~~~~ivt~G~s~s~Dr~-VklWDlr~~~-------------~p~~~~-~~d~~~~~~~~~~d~d~~~L~lggkgDg~Ir 285 (493)
T PTZ00421 221 KRKDLIITLGCSKSQQRQ-IMLWDTRKMA-------------SPYSTV-DLDQSSALFIPFFDEDTNLLYIGSKGEGNIR 285 (493)
T ss_pred CCCCeEEEEecCCCCCCe-EEEEeCCCCC-------------CceeEe-ccCCCCceEEEEEcCCCCEEEEEEeCCCeEE
Confidence 9988888765 3665 9999997641 111221 111223366778999999999987 599999
Q ss_pred EEecCCCC
Q 005349 406 LFAINPLG 413 (701)
Q Consensus 406 Iwdl~~~g 413 (701)
+|++....
T Consensus 286 iwdl~~~~ 293 (493)
T PTZ00421 286 CFELMNER 293 (493)
T ss_pred EEEeeCCc
Confidence 99998654
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4.1e-16 Score=171.41 Aligned_cols=233 Identities=15% Similarity=0.214 Sum_probs=173.8
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+=+|+.=|++.++|||-++-. .-.-+.-.+-|||..+|++. .+-++ ++.+ |
T Consensus 26 Pw~la~LynG~V~IWnyetqt-mVksfeV~~~PvRa~kfiaR--------------knWiv-~GsD---------D---- 76 (794)
T KOG0276|consen 26 PWILAALYNGDVQIWNYETQT-MVKSFEVSEVPVRAAKFIAR--------------KNWIV-TGSD---------D---- 76 (794)
T ss_pred ceEEEeeecCeeEEEecccce-eeeeeeecccchhhheeeec--------------cceEE-EecC---------C----
Confidence 445666677779999998732 22222234788998888753 12232 2211 1
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecC---CEEEEEeCCEEEEEECCC-CceeEEEe
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---RVVAICQAAQVHCFDAAT-LEIEYAIL 172 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~---~~LaVa~~~~I~iwDl~t-~~~~~tl~ 172 (701)
..||+|+..|++.|++++- +.-|++|+..+ -+|..+.|-+|++||-.. ..+.++++
T Consensus 77 -------------------~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe 137 (794)
T KOG0276|consen 77 -------------------MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE 137 (794)
T ss_pred -------------------ceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc
Confidence 5699999999999999985 67899999964 345556677999999875 46777887
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeE
Q 005349 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (701)
Q Consensus 173 t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~ 252 (701)
+|... .|. +|+-+++
T Consensus 138 GH~Hy--------------VMq-----v~fnPkD---------------------------------------------- 152 (794)
T KOG0276|consen 138 GHEHY--------------VMQ-----VAFNPKD---------------------------------------------- 152 (794)
T ss_pred CcceE--------------EEE-----EEecCCC----------------------------------------------
Confidence 77421 121 2222100
Q ss_pred EcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCC
Q 005349 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (701)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd 332 (701)
+.+|+++.-|++|+||.+.+..+..+|++|...|+|++|-+-
T Consensus 153 --------------------------------------~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~ 194 (794)
T KOG0276|consen 153 --------------------------------------PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTG 194 (794)
T ss_pred --------------------------------------ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccC
Confidence 124566778999999999999999999999999999999995
Q ss_pred C--CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 333 G--ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 333 G--~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
| -+|+||++|-+ |+|||..+. .|+.+|. ||++ .|..++|.|.=.++++||.|||++||.-.
T Consensus 195 gdkpylIsgaDD~t-iKvWDyQtk--------------~CV~TLe-GHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 195 GDKPYLISGADDLT-IKVWDYQTK--------------SCVQTLE-GHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred CCcceEEecCCCce-EEEeecchH--------------HHHHHhh-cccc-cceEEEecCCCcEEEEecCCccEEEecCc
Confidence 5 59999999965 999999876 6777774 7664 59999999999999999999999999988
Q ss_pred CCCCceee
Q 005349 411 PLGGSVNF 418 (701)
Q Consensus 411 ~~g~~~~~ 418 (701)
++.-+-++
T Consensus 258 Ty~lE~tL 265 (794)
T KOG0276|consen 258 TYKLEKTL 265 (794)
T ss_pred ceehhhhh
Confidence 87655444
No 46
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.70 E-value=7.3e-17 Score=173.41 Aligned_cols=244 Identities=11% Similarity=0.140 Sum_probs=177.4
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
..+|..|.++-+.||++-+.+.+...+..|..+|+.+.+.+.+. .+|-..
T Consensus 228 hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~-------------~fLS~s----------------- 277 (503)
T KOG0282|consen 228 HLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT-------------SFLSAS----------------- 277 (503)
T ss_pred eEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-------------eeeeee-----------------
Confidence 45555566777999999887888889999999999998865321 112111
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEecC---CEEE-EEeCCEEEEEECCCCceeEEEec
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSS---RVVA-ICQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s~---~~La-Va~~~~I~iwDl~t~~~~~tl~t 173 (701)
.+++|++||++||+++..++....+++|.|.+ +++. ..++++|..||+++++.++....
T Consensus 278 -----------------fD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~ 340 (503)
T KOG0282|consen 278 -----------------FDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR 340 (503)
T ss_pred -----------------cceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh
Confidence 34889999999999999999999999999952 4444 47899999999999986555443
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEE
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~ 253 (701)
+-. .++.+ .|
T Consensus 341 hLg------------~i~~i-------~F--------------------------------------------------- 350 (503)
T KOG0282|consen 341 HLG------------AILDI-------TF--------------------------------------------------- 350 (503)
T ss_pred hhh------------heeee-------EE---------------------------------------------------
Confidence 310 00000 01
Q ss_pred cCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEee-cCCCCeEEEEEcCC
Q 005349 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPS 332 (701)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-~H~~~Is~laFSPd 332 (701)
.++ +..|+++.+|+.|+||+.....++..+. .+...+.||+.+|+
T Consensus 351 ----------------~~~------------------g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~ 396 (503)
T KOG0282|consen 351 ----------------VDE------------------GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN 396 (503)
T ss_pred ----------------ccC------------------CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCC
Confidence 011 1235566788999999999887766544 34457788999999
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCccc-EEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 333 G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~-I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
|..++.-|.|.. |-||.+.+... ...++..+|+..+- -..|.|||||++|++|+.||.+.+||.++
T Consensus 397 ~~~~~aQs~dN~-i~ifs~~~~~r------------~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 397 GKWFAAQSMDNY-IAIFSTVPPFR------------LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred CCeehhhccCce-EEEEecccccc------------cCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 999999999976 89999876410 11122224554332 45699999999999999999999999999
Q ss_pred CCCceeecCCCCCc
Q 005349 412 LGGSVNFQPTDANF 425 (701)
Q Consensus 412 ~g~~~~~~~H~~~~ 425 (701)
......+.+|....
T Consensus 464 ~kl~~~lkah~~~c 477 (503)
T KOG0282|consen 464 TKLVSKLKAHDQPC 477 (503)
T ss_pred hhhhhccccCCcce
Confidence 88888899995443
No 47
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=5.6e-16 Score=173.35 Aligned_cols=226 Identities=16% Similarity=0.272 Sum_probs=176.9
Q ss_pred CCcEEEEeccCC-eEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 005349 17 TRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (701)
Q Consensus 17 ~~~vL~~g~~~g-~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~ 95 (701)
-.+.+++|+.+| +||||+..+ ...|.+..|+|.+-.+..+|+.. .| +.++
T Consensus 423 gd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AHdgaIWsi~~~pD~~-------g~---------vT~s------------ 473 (888)
T KOG0306|consen 423 GDRYIVLGTKNGELQVFDLASA-SLVETIRAHDGAIWSISLSPDNK-------GF---------VTGS------------ 473 (888)
T ss_pred CCceEEEeccCCceEEEEeehh-hhhhhhhccccceeeeeecCCCC-------ce---------EEec------------
Confidence 467888888888 999999974 56677778999999999887531 11 2221
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEECCC-----Cc--------EEEEEecCCCEEEEEec--CCEEEEE-eCCEEEE
Q 005349 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRS-----QS--------YVHMLKFRSPIYSVRCS--SRVVAIC-QAAQVHC 159 (701)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~~~~~tVriWdl~t-----g~--------~v~tL~f~s~V~sV~~s--~~~LaVa-~~~~I~i 159 (701)
.+++|+|||.+- |. .-.+|+++..|.+|++| +++|||+ ++.+++|
T Consensus 474 -------------------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkV 534 (888)
T KOG0306|consen 474 -------------------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKV 534 (888)
T ss_pred -------------------CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEE
Confidence 238999999742 21 12567889999999998 6899995 6999999
Q ss_pred EECCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeeh
Q 005349 160 FDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHY 239 (701)
Q Consensus 160 wDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~ 239 (701)
|=+.|++..-+|-+|..|.- .|-++ | +
T Consensus 535 yflDtlKFflsLYGHkLPV~------------smDIS-----~---------------D--------------------- 561 (888)
T KOG0306|consen 535 YFLDTLKFFLSLYGHKLPVL------------SMDIS-----P---------------D--------------------- 561 (888)
T ss_pred EEecceeeeeeeccccccee------------EEecc-----C---------------C---------------------
Confidence 99999998777777743211 12110 1 0
Q ss_pred hhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeec
Q 005349 240 AKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA 319 (701)
Q Consensus 240 a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~ 319 (701)
+ ..+++++.|..|+||-++=|.|-+.|-+
T Consensus 562 ---------------------------------S------------------klivTgSADKnVKiWGLdFGDCHKS~fA 590 (888)
T KOG0306|consen 562 ---------------------------------S------------------KLIVTGSADKNVKIWGLDFGDCHKSFFA 590 (888)
T ss_pred ---------------------------------c------------------CeEEeccCCCceEEeccccchhhhhhhc
Confidence 0 1234566789999999999999999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEe
Q 005349 320 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 399 (701)
Q Consensus 320 H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS 399 (701)
|...|.++.|-|+..++.||+.||. |+-||-... .++.+|+ ||+ ..|+|++.+|+|.+++++|
T Consensus 591 HdDSvm~V~F~P~~~~FFt~gKD~k-vKqWDg~kF--------------e~iq~L~-~H~-~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 591 HDDSVMSVQFLPKTHLFFTCGKDGK-VKQWDGEKF--------------EEIQKLD-GHH-SEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred ccCceeEEEEcccceeEEEecCcce-EEeechhhh--------------hhheeec-cch-heeeeeEEcCCCCeEEecc
Confidence 9999999999999999999999997 999998765 6777774 554 4699999999999999999
Q ss_pred CCCcEEEEecCC
Q 005349 400 SRGTSHLFAINP 411 (701)
Q Consensus 400 ~dgTI~Iwdl~~ 411 (701)
.|.+|++|.-..
T Consensus 654 hD~sIRlwE~td 665 (888)
T KOG0306|consen 654 HDKSIRLWERTD 665 (888)
T ss_pred CCceeEeeeccC
Confidence 999999998754
No 48
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.4e-14 Score=147.80 Aligned_cols=239 Identities=14% Similarity=0.230 Sum_probs=161.0
Q ss_pred CCCcEEEEecc-CCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 16 ATRRVLLLGYR-SGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 16 ~~~~vL~~g~~-~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
....+|+.+.+ +.+|+||+.. +.....+..+.-.|..+++.-. +-.++.+. +.
T Consensus 24 ~~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth~---------------~~~~i~sS-tk--------- 77 (311)
T KOG1446|consen 24 DDGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTHH---------------SNTVIHSS-TK--------- 77 (311)
T ss_pred CCCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEecC---------------CceEEEcc-CC---------
Confidence 34666666554 4899999998 4455555545555666666521 12222321 10
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecC---CEEEEEeCCEEEEEECCCCceeEE
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---RVVAICQAAQVHCFDAATLEIEYA 170 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~---~~LaVa~~~~I~iwDl~t~~~~~t 170 (701)
.+.+||.-||.++++++.+.. ...|.+++.++ .+|.++.|++|++||+++.+|..-
T Consensus 78 --------------------~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~ 137 (311)
T KOG1446|consen 78 --------------------EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL 137 (311)
T ss_pred --------------------CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE
Confidence 237899999999999999875 66999999984 466678999999999998777655
Q ss_pred EecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhce
Q 005349 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (701)
Q Consensus 171 l~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~g 250 (701)
+.-.. .|+ .||- |+. ++
T Consensus 138 l~~~~---------------~pi------~AfD-------------p~G---------------Li-------------- 154 (311)
T KOG1446|consen 138 LNLSG---------------RPI------AAFD-------------PEG---------------LI-------------- 154 (311)
T ss_pred EecCC---------------Ccc------eeEC-------------CCC---------------cE--------------
Confidence 53221 122 2453 110 00
Q ss_pred eEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC--cEEEEee---cCCCCeE
Q 005349 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFR---AHKSPIS 325 (701)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~--~~i~~~~---~H~~~Is 325 (701)
++.+.....|+|||+++- .+..+|. +-....+
T Consensus 155 -------------------------------------------fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~ 191 (311)
T KOG1446|consen 155 -------------------------------------------FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWT 191 (311)
T ss_pred -------------------------------------------EEEecCCCeEEEEEecccCCCCceeEccCCCCcccee
Confidence 111122238999999863 4556665 3367899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEE
Q 005349 326 ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSH 405 (701)
Q Consensus 326 ~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~ 405 (701)
.|.|||||++|+-+...+. +.|.|...| ...+....++....- -.+.+|+|||+++.+|+.||+||
T Consensus 192 ~l~FS~dGK~iLlsT~~s~-~~~lDAf~G------------~~~~tfs~~~~~~~~-~~~a~ftPds~Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 192 DLEFSPDGKSILLSTNASF-IYLLDAFDG------------TVKSTFSGYPNAGNL-PLSATFTPDSKFVLSGSDDGTIH 257 (311)
T ss_pred eeEEcCCCCEEEEEeCCCc-EEEEEccCC------------cEeeeEeeccCCCCc-ceeEEECCCCcEEEEecCCCcEE
Confidence 9999999999998888775 899999887 223333333221111 25789999999999999999999
Q ss_pred EEecCCCCCceeecC
Q 005349 406 LFAINPLGGSVNFQP 420 (701)
Q Consensus 406 Iwdl~~~g~~~~~~~ 420 (701)
||+++++.....+++
T Consensus 258 vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 258 VWNLETGKKVAVLRG 272 (311)
T ss_pred EEEcCCCcEeeEecC
Confidence 999987655556665
No 49
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.69 E-value=1.6e-15 Score=152.69 Aligned_cols=234 Identities=15% Similarity=0.207 Sum_probs=160.6
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEee-eccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVS-RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs-~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
.++..+.++..+.||+++...-..++.. +|.+.|--+..-|. .-++++.+.+
T Consensus 33 ~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~-------------~~d~~atas~-------------- 85 (313)
T KOG1407|consen 33 TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK-------------HPDLFATASG-------------- 85 (313)
T ss_pred ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC-------------CCcceEEecC--------------
Confidence 4555566777899999987433333332 34445554443331 1134554442
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEec
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t 173 (701)
+++|++||.+++++++.+.-+..-..+.++ +..+++ .-+..|.++|+++.+......-
T Consensus 86 -------------------dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~ 146 (313)
T KOG1407|consen 86 -------------------DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF 146 (313)
T ss_pred -------------------CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc
Confidence 278999999999999999987665667776 466666 5678999999998764433211
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEE
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~ 253 (701)
. + -.+-++ + +++
T Consensus 147 ~-----~--------e~ne~~-------w----------------~~~-------------------------------- 158 (313)
T KOG1407|consen 147 K-----F--------EVNEIS-------W----------------NNS-------------------------------- 158 (313)
T ss_pred c-----c--------eeeeee-------e----------------cCC--------------------------------
Confidence 0 0 000011 0 000
Q ss_pred cCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCC
Q 005349 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (701)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG 333 (701)
+..|.-...-|+|.|....+.+++..+++|...+.||+|+|+|
T Consensus 159 -------------------------------------nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G 201 (313)
T KOG1407|consen 159 -------------------------------------NDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG 201 (313)
T ss_pred -------------------------------------CCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCC
Confidence 0011112335899999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 005349 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 334 ~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g 413 (701)
++||+||.|. .+-+||+... .|+..+.|-. ..|..|+||.||++||++|.|.-|-|=.+.++.
T Consensus 202 ryfA~GsADA-lvSLWD~~EL--------------iC~R~isRld--wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 202 RYFATGSADA-LVSLWDVDEL--------------ICERCISRLD--WPVRTLSFSHDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred ceEeeccccc-eeeccChhHh--------------hhheeecccc--CceEEEEeccCcceeeccCccceEEeEecccCC
Confidence 9999999996 4899999875 4555554432 359999999999999999999999888887754
Q ss_pred Cceeec
Q 005349 414 GSVNFQ 419 (701)
Q Consensus 414 ~~~~~~ 419 (701)
..-.+.
T Consensus 265 ~~~eI~ 270 (313)
T KOG1407|consen 265 RVWEIP 270 (313)
T ss_pred eEEEee
Confidence 433443
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.68 E-value=3.5e-15 Score=152.79 Aligned_cols=238 Identities=18% Similarity=0.329 Sum_probs=172.2
Q ss_pred CeeEe------eceeeecCCC---------CCCcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCcc
Q 005349 1 MVLWA------GFDKLESEAG---------ATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKR 65 (701)
Q Consensus 1 ~v~w~------~fd~l~~~~~---------~~~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~ 65 (701)
+++|- .|-++.++.+ ....++..|.+..+.+||+++ |.+.. +|.+--+|+..++ |
T Consensus 71 I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t-G~~~r---k~k~h~~~vNs~~-p----- 140 (338)
T KOG0265|consen 71 IVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET-GKRIR---KHKGHTSFVNSLD-P----- 140 (338)
T ss_pred EEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc-ceeee---hhccccceeeecC-c-----
Confidence 46785 4445555555 237888889999999999997 43333 3444444444443 2
Q ss_pred ccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec
Q 005349 66 SRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS 145 (701)
Q Consensus 66 ~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s 145 (701)
..|.+..||+++. ++|+|+||+|+.+++++++-+.++.+|.|+
T Consensus 141 ------~rrg~~lv~Sgsd-------------------------------D~t~kl~D~R~k~~~~t~~~kyqltAv~f~ 183 (338)
T KOG0265|consen 141 ------SRRGPQLVCSGSD-------------------------------DGTLKLWDIRKKEAIKTFENKYQLTAVGFK 183 (338)
T ss_pred ------cccCCeEEEecCC-------------------------------CceEEEEeecccchhhccccceeEEEEEec
Confidence 1234455566421 289999999999999999888899999996
Q ss_pred ---CCEEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCccccc
Q 005349 146 ---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQ 222 (701)
Q Consensus 146 ---~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~ 222 (701)
.+++...-|+.|++||++..+..+++.+|.++.. -+++++
T Consensus 184 d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt------------~lsls~------------------------- 226 (338)
T KOG0265|consen 184 DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTIT------------GLSLSR------------------------- 226 (338)
T ss_pred ccccceeeccccCceeeeccccCcceEEeecccCcee------------eEEecc-------------------------
Confidence 4666667899999999999999999988754210 021110
Q ss_pred ccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCe
Q 005349 223 SRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGM 302 (701)
Q Consensus 223 s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~ 302 (701)
+|. .+.+-.-|.+
T Consensus 227 ---------~gs----------------------------------------------------------~llsnsMd~t 239 (338)
T KOG0265|consen 227 ---------YGS----------------------------------------------------------FLLSNSMDNT 239 (338)
T ss_pred ---------CCC----------------------------------------------------------ccccccccce
Confidence 000 0011224678
Q ss_pred EEEEECCC----CcEEEEeecCCC----CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 303 VIVRDIVS----KNVIAQFRAHKS----PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 303 V~IwDl~s----~~~i~~~~~H~~----~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
+++||++- .+++..|.+|.. .....++||+++.+..+|.|.. +.|||.... ..+|.|
T Consensus 240 vrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~-vyvwd~~~r--------------~~lykl 304 (338)
T KOG0265|consen 240 VRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRF-VYVWDTTSR--------------RILYKL 304 (338)
T ss_pred EEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccce-EEEeecccc--------------cEEEEc
Confidence 99999874 457889998753 4456799999999999999965 899998765 688988
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 406 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~I 406 (701)
-|+. ..|.++.|.|.-.+|.++++|.||.+
T Consensus 305 -pGh~-gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 305 -PGHY-GSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred -CCcc-eeEEEeeecCCCcEEEEeccCceeEe
Confidence 4664 45999999999999999999999986
No 51
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.68 E-value=7.2e-15 Score=148.45 Aligned_cols=239 Identities=15% Similarity=0.138 Sum_probs=158.2
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
..++..+-+...-||--.+ |+..-....|.|.|-|+.+--. ++ .++.++
T Consensus 23 DLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~-------------s~---~liTGS-------------- 71 (327)
T KOG0643|consen 23 DLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWD-------------SK---HLITGS-------------- 71 (327)
T ss_pred cEEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCC-------------cc---eeeecc--------------
Confidence 4556666677889998865 5555566689999999876311 11 122321
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEEeCC------EEEEEECCCCce--
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAA------QVHCFDAATLEI-- 167 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa~~~------~I~iwDl~t~~~-- 167 (701)
.+.+++|||.++|+++.+++++++|+.+.|+ +++++++.|+ .|.+||++....
T Consensus 72 -----------------AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~ 134 (327)
T KOG0643|consen 72 -----------------ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI 134 (327)
T ss_pred -----------------ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh
Confidence 2378999999999999999999999999997 5666665543 688998875431
Q ss_pred -----eEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhh
Q 005349 168 -----EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKE 242 (701)
Q Consensus 168 -----~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~ 242 (701)
...+.+. + + -.+++
T Consensus 135 ~s~ep~~kI~t~-------------------------------------------~----s---------kit~a----- 153 (327)
T KOG0643|consen 135 DSEEPYLKIPTP-------------------------------------------D----S---------KITSA----- 153 (327)
T ss_pred cccCceEEecCC-------------------------------------------c----c---------ceeee-----
Confidence 1111110 0 0 00000
Q ss_pred chhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC-cEEEEeecCC
Q 005349 243 SSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHK 321 (701)
Q Consensus 243 ~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~~H~ 321 (701)
+ +.++ +..++.+..+|.|.+||+.++ +.+..-+.|.
T Consensus 154 -------~--------Wg~l----------------------------~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~ 190 (327)
T KOG0643|consen 154 -------L--------WGPL----------------------------GETIIAGHEDGSISIYDARTGKELVDSDEEHS 190 (327)
T ss_pred -------e--------eccc----------------------------CCEEEEecCCCcEEEEEcccCceeeechhhhc
Confidence 0 0000 123455778999999999997 4566668999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCC---------CCCCCc----------cCCCCce--------------
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGI---------LGTSSA----------CDAGTSY-------------- 368 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~---------~~~~s~----------~~~~~~~-------------- 368 (701)
+.|+.|+|+||.++++|+|.|.+ -++||..+.. +-+..+ .+.+.+.
T Consensus 191 ~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEA 269 (327)
T KOG0643|consen 191 SKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEA 269 (327)
T ss_pred cccccccccCCcceEEecccCcc-ceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhh
Confidence 99999999999999999999976 7999987641 111111 0000000
Q ss_pred --------eEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 369 --------VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 369 --------~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
+.+-++ .|| -..|++++|+|||+-.++|+.||.|+|....+
T Consensus 270 rFyh~i~eEEigrv-kGH-FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 270 RFYHLIFEEEIGRV-KGH-FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred hHHHHHHHHHhccc-ccc-ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 000011 233 24699999999999999999999999876543
No 52
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.8e-15 Score=155.42 Aligned_cols=215 Identities=19% Similarity=0.293 Sum_probs=146.0
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
.+++..|.++-++++|++. + ....+..|+++|+|++..+.- . .++.++|
T Consensus 66 ~~~~~G~~dg~vr~~Dln~-~-~~~~igth~~~i~ci~~~~~~--------------~--~vIsgsW------------- 114 (323)
T KOG1036|consen 66 STIVTGGLDGQVRRYDLNT-G-NEDQIGTHDEGIRCIEYSYEV--------------G--CVISGSW------------- 114 (323)
T ss_pred ceEEEeccCceEEEEEecC-C-cceeeccCCCceEEEEeeccC--------------C--eEEEccc-------------
Confidence 5667777777788888876 2 445566688888888876420 1 1234444
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEecCCEEEE-EeCCEEEEEECCCCceeEEEecCCC
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPI 176 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~ 176 (701)
+++|+|||.+....+.++.-...|+++..+++.|+| +.+++|.+||+++++..++..+.+.
T Consensus 115 ------------------D~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l 176 (323)
T KOG1036|consen 115 ------------------DKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL 176 (323)
T ss_pred ------------------CccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccc
Confidence 489999999997777777777799999999888887 7899999999999987666655432
Q ss_pred ccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCC
Q 005349 177 VMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGD 256 (701)
Q Consensus 177 ~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd 256 (701)
.+. .-.+++-|.-=.|+ ..|..||
T Consensus 177 kyq----------tR~v~~~pn~eGy~----~sSieGR------------------------------------------ 200 (323)
T KOG1036|consen 177 KYQ----------TRCVALVPNGEGYV----VSSIEGR------------------------------------------ 200 (323)
T ss_pred eeE----------EEEEEEecCCCceE----EEeecce------------------------------------------
Confidence 211 11222211111111 1122333
Q ss_pred ccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC----cEEEEeecCC---------CC
Q 005349 257 LGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK----NVIAQFRAHK---------SP 323 (701)
Q Consensus 257 ~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~----~~i~~~~~H~---------~~ 323 (701)
|.+=+++.. +..-.|++|. -|
T Consensus 201 ----------------------------------------------VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP 234 (323)
T KOG1036|consen 201 ----------------------------------------------VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP 234 (323)
T ss_pred ----------------------------------------------EEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence 333222221 1223444443 39
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC
Q 005349 324 ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 324 Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
|++|+|+|--..||||+.||. |.+||+.+. +.++.|.+- ...|-+++|+.||..||++++
T Consensus 235 VNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~r--------------Krl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 235 VNAIAFHPIHGTFATGGSDGI-VNIWDLFNR--------------KRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eceeEeccccceEEecCCCce-EEEccCcch--------------hhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 999999999888999999996 999999876 667777653 234999999999999999986
No 53
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.68 E-value=1.5e-14 Score=156.86 Aligned_cols=109 Identities=18% Similarity=0.255 Sum_probs=93.3
Q ss_pred cccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
+++.+|+.|.+|+-.-.+-...++.|..=|.|+.|||||+++||++.||+ |.|||-.++ +.+..|
T Consensus 164 ~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk-i~iyDGktg--------------e~vg~l 228 (603)
T KOG0318|consen 164 ATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK-IYIYDGKTG--------------EKVGEL 228 (603)
T ss_pred EeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc-EEEEcCCCc--------------cEEEEe
Confidence 45678899999998777788889999999999999999999999999998 899999988 677777
Q ss_pred ecc-CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 375 QRG-LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 375 ~rG-~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
.-. -+...|+.|+||||++.|+++|.|.|++|||+++.....++
T Consensus 229 ~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 229 EDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred cCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence 521 12234999999999999999999999999999987655555
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.67 E-value=1.4e-16 Score=164.95 Aligned_cols=226 Identities=17% Similarity=0.276 Sum_probs=163.7
Q ss_pred CcEEEEecc-CCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGYR-SGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~~-~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
++|++.|.+ .+++|||+++ ++....+-.|-..|--++|.- .++..|+.
T Consensus 247 ~rviisGSSDsTvrvWDv~t-ge~l~tlihHceaVLhlrf~n----------------g~mvtcSk-------------- 295 (499)
T KOG0281|consen 247 ERVIVSGSSDSTVRVWDVNT-GEPLNTLIHHCEAVLHLRFSN----------------GYMVTCSK-------------- 295 (499)
T ss_pred ceEEEecCCCceEEEEeccC-CchhhHHhhhcceeEEEEEeC----------------CEEEEecC--------------
Confidence 557777664 5699999998 667666666777777777642 24443432
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcE---EEEE-ecCCCEEEEEecCCEEEE-EeCCEEEEEECCCCceeEEE
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSY---VHML-KFRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAI 171 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~---v~tL-~f~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t~~~~~tl 171 (701)
+.++++||+.+-.. .+.| .+...|..|.|+.++++. +.|++|++||+.|.++++++
T Consensus 296 -------------------DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl 356 (499)
T KOG0281|consen 296 -------------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTL 356 (499)
T ss_pred -------------------CceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhh
Confidence 27799999987652 2222 247799999999888877 57899999999999999999
Q ss_pred ecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhcee
Q 005349 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (701)
Q Consensus 172 ~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl 251 (701)
.+|.. | +| .|-|- |.
T Consensus 357 ~gHkR--G-------------IA----ClQYr-----------------------------~r----------------- 371 (499)
T KOG0281|consen 357 NGHKR--G-------------IA----CLQYR-----------------------------DR----------------- 371 (499)
T ss_pred hcccc--c-------------ce----ehhcc-----------------------------Ce-----------------
Confidence 88742 1 11 01121 11
Q ss_pred EEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC
Q 005349 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (701)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP 331 (701)
.+++++.|.+|++||+..|.++..+++|..-|.|+.|+
T Consensus 372 -----------------------------------------lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd- 409 (499)
T KOG0281|consen 372 -----------------------------------------LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD- 409 (499)
T ss_pred -----------------------------------------EEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec-
Confidence 12345678899999999999999999999999999996
Q ss_pred CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 332 dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
.+.+++|..||+ |+|||+..+..-. + .....|+..+-+ +..+|..+.| |...++++|.|.||-|||.-.
T Consensus 410 -~krIVSGaYDGk-ikvWdl~aaldpr--a---~~~~~Cl~~lv~--hsgRVFrLQF--D~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 410 -NKRIVSGAYDGK-IKVWDLQAALDPR--A---PASTLCLRTLVE--HSGRVFRLQF--DEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred -Cceeeeccccce-EEEEecccccCCc--c---cccchHHHhhhh--ccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence 588999999998 9999998762100 0 001134444433 3346888989 567899999999999999865
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.67 E-value=1.1e-14 Score=153.07 Aligned_cols=266 Identities=15% Similarity=0.234 Sum_probs=173.3
Q ss_pred CCcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEE-EEeeCCCC---CccccCccccCCCEEEEEe--CCCCcCCcc
Q 005349 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFM-QMLPRPIT---SKRSRDKFAEVRPLLVFCA--DGSRSCGTK 90 (701)
Q Consensus 17 ~~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l-~~lp~p~~---~~~~~d~f~~~rpllavv~--~g~~~~~~~ 90 (701)
.+.+|..+|++..+|||.. |+...++..|-++++.+ -+.+++.. ..+..| -+|-++- .+.......
T Consensus 115 ~~~IltgsYDg~~riWd~~--Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~D------qtl~Lw~~~~~~~~~~~~ 186 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK--GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMD------QTLRLWKWNVGENKVKAL 186 (423)
T ss_pred CceEEEeecCCeeEEEecC--CceEEEEecCCcceeeeEEEecCCccceEEEecCC------ceEEEEEecCchhhhhHH
Confidence 5889999999999999987 68999999999999944 45666542 111111 1111111 000000000
Q ss_pred --ccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECC-------------------------CCcEEEEEe-cCCCEEEE
Q 005349 91 --VQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLR-------------------------SQSYVHMLK-FRSPIYSV 142 (701)
Q Consensus 91 --~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~-------------------------tg~~v~tL~-f~s~V~sV 142 (701)
...+.+.+-.-.+..+..-.-..+++++|+||+.. ++..+-+|. +..+|.+|
T Consensus 187 ~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V 266 (423)
T KOG0313|consen 187 KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV 266 (423)
T ss_pred hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeE
Confidence 00111111000000000011223589999999921 123344554 46799999
Q ss_pred EecC--CEEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCccc
Q 005349 143 RCSS--RVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHL 220 (701)
Q Consensus 143 ~~s~--~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l 220 (701)
.|+. ..+.++-|.+|+.||+.++.++-++.+.. .++.+ +|.+.
T Consensus 267 ~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~k-------------sl~~i-------~~~~~--------------- 311 (423)
T KOG0313|consen 267 VWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNK-------------SLNCI-------SYSPL--------------- 311 (423)
T ss_pred EEcCCCceEeecccceEEEEEeecccceeeeecCc-------------ceeEe-------ecccc---------------
Confidence 9974 45566889999999999999888876642 11222 22200
Q ss_pred ccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCC
Q 005349 221 MQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNV 300 (701)
Q Consensus 221 ~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~d 300 (701)
+..++.+..|
T Consensus 312 ----------------------------------------------------------------------~~Ll~~gssd 321 (423)
T KOG0313|consen 312 ----------------------------------------------------------------------SKLLASGSSD 321 (423)
T ss_pred ----------------------------------------------------------------------cceeeecCCC
Confidence 0122335567
Q ss_pred CeEEEEECCCC---cEEEEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec
Q 005349 301 GMVIVRDIVSK---NVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (701)
Q Consensus 301 G~V~IwDl~s~---~~i~~~~~H~~~Is~laFSPd-G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r 376 (701)
..++|||-+++ -+..+|-+|++-|.++.++|. -.+|+++|.||+ +++||++.. ...||.+.+
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~klWDvRS~-------------k~plydI~~ 387 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKLWDVRST-------------KAPLYDIAG 387 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEEEEeccC-------------CCcceeecc
Confidence 78999998875 356788899999999999994 567999999998 899999875 136888865
Q ss_pred cCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 377 G~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
. ..+|.++.|+ ++..|++|+.|.+++||.-.+.
T Consensus 388 h--~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~~ 420 (423)
T KOG0313|consen 388 H--NDKVLSVDWN-EGGLIVSGGADNKLRIFKGSPI 420 (423)
T ss_pred C--CceEEEEecc-CCceEEeccCcceEEEeccccc
Confidence 3 4569999997 6679999999999999987654
No 56
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.67 E-value=4.6e-15 Score=151.99 Aligned_cols=217 Identities=18% Similarity=0.260 Sum_probs=153.8
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
.+|++.|.++..++||++. + ....+..|+++|+.+++.+.+. .++| ++++|
T Consensus 85 skVf~g~~Dk~~k~wDL~S-~-Q~~~v~~Hd~pvkt~~wv~~~~------------~~cl--~TGSW------------- 135 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLAS-G-QVSQVAAHDAPVKTCHWVPGMN------------YQCL--VTGSW------------- 135 (347)
T ss_pred ceEEeeccCCceEEEEccC-C-CeeeeeecccceeEEEEecCCC------------ccee--Eeccc-------------
Confidence 7899999999999999997 3 4555667999999999987532 1233 45444
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEecCCEEEE-EeCCEEEEEECCCCceeEEEecCCC
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPI 176 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~ 176 (701)
++||||||+|+...+.+++++..||++.+-..+++| ..++.|.+|+|+.....+....+|.
T Consensus 136 ------------------DKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpL 197 (347)
T KOG0647|consen 136 ------------------DKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPL 197 (347)
T ss_pred ------------------ccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcc
Confidence 599999999999999999999999999998777777 5678999999987765555444432
Q ss_pred ccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCC
Q 005349 177 VMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGD 256 (701)
Q Consensus 177 ~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd 256 (701)
... -|.+|..-+.
T Consensus 198 k~Q-----------------~R~va~f~d~-------------------------------------------------- 210 (347)
T KOG0647|consen 198 KWQ-----------------TRCVACFQDK-------------------------------------------------- 210 (347)
T ss_pred cce-----------------eeEEEEEecC--------------------------------------------------
Confidence 211 1333322100
Q ss_pred ccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC--cEEEEeecCCC---------CeE
Q 005349 257 LGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFRAHKS---------PIS 325 (701)
Q Consensus 257 ~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~--~~i~~~~~H~~---------~Is 325 (701)
. .++-+.-.|.|-|..+..+ +.--.|+.|.. +|+
T Consensus 211 -----------------~------------------~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 211 -----------------D------------------GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVN 255 (347)
T ss_pred -----------------C------------------ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEec
Confidence 0 0001223456666555554 33345667752 688
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC
Q 005349 326 ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 326 ~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
.|+|+|.-..|+|++.||+ +..||-... .+|.+.. ..+..|.+++|+.+|.++|-+..
T Consensus 256 si~FhP~hgtlvTaGsDGt-f~FWDkdar--------------~kLk~s~--~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 256 SIAFHPVHGTLVTAGSDGT-FSFWDKDAR--------------TKLKTSE--THPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred ceEeecccceEEEecCCce-EEEecchhh--------------hhhhccC--cCCCccceeEecCCCCEEEEEee
Confidence 8999999888999999998 999997654 3343332 23456999999999999987653
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=4.7e-15 Score=147.48 Aligned_cols=234 Identities=14% Similarity=0.180 Sum_probs=168.4
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
.-+|..|.+..+++|+.-. +.+....+.|.-.|..+....+. . -++-|++
T Consensus 30 nY~ltcGsdrtvrLWNp~r-g~liktYsghG~EVlD~~~s~Dn-------s-------kf~s~Gg--------------- 79 (307)
T KOG0316|consen 30 NYCLTCGSDRTVRLWNPLR-GALIKTYSGHGHEVLDAALSSDN-------S-------KFASCGG--------------- 79 (307)
T ss_pred CEEEEcCCCceEEeecccc-cceeeeecCCCceeeeccccccc-------c-------ccccCCC---------------
Confidence 6788899999999999976 67888888888888877654321 0 1222221
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecC--CEEEE-EeCCEEEEEECCCC--ceeEEE
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVVAI-CQAAQVHCFDAATL--EIEYAI 171 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~--~~LaV-a~~~~I~iwDl~t~--~~~~tl 171 (701)
++.|.+||..||+.++.++. ..+|.+|+||. .+|+. ++|.+|++||-+.- +.++.+
T Consensus 80 ------------------Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 80 ------------------DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred ------------------CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh
Confidence 27799999999999998875 57999999984 45555 68999999997753 334443
Q ss_pred ecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhcee
Q 005349 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (701)
Q Consensus 172 ~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl 251 (701)
.+... +.+++ - .++
T Consensus 142 dea~D--------------~V~Si-----~-----------------------------------------v~~------ 155 (307)
T KOG0316|consen 142 DEAKD--------------GVSSI-----D-----------------------------------------VAE------ 155 (307)
T ss_pred hhhcC--------------ceeEE-----E-----------------------------------------ecc------
Confidence 33210 00000 0 000
Q ss_pred EEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC
Q 005349 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (701)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP 331 (701)
-.++.++.||+++.||++.|+.....-+| ||+|++||+
T Consensus 156 ----------------------------------------heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~ 193 (307)
T KOG0316|consen 156 ----------------------------------------HEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSK 193 (307)
T ss_pred ----------------------------------------cEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecC
Confidence 02344677999999999999876665555 999999999
Q ss_pred CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCccc-EEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 332 dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~-I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
||..+..++-|++ +|+-|-.++ +.|.. +.|+.+.. =.+++|+....++++||.||.|.+||+.
T Consensus 194 d~nc~La~~l~st-lrLlDk~tG--------------klL~s-YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 194 DGNCSLASSLDST-LRLLDKETG--------------KLLKS-YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred CCCEEEEeeccce-eeecccchh--------------HHHHH-hcccccceeeeeeeecccceeEEeccCCceEEEEEec
Confidence 9999999999987 899998887 33322 34655444 4578899988999999999999999998
Q ss_pred CCCCceeecCCCC
Q 005349 411 PLGGSVNFQPTDA 423 (701)
Q Consensus 411 ~~g~~~~~~~H~~ 423 (701)
.......+..|+.
T Consensus 258 d~~~~sk~~~~~~ 270 (307)
T KOG0316|consen 258 DETQISKLSVVST 270 (307)
T ss_pred cceeeeeeccCCc
Confidence 7655556655543
No 58
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=2.5e-14 Score=160.34 Aligned_cols=250 Identities=17% Similarity=0.258 Sum_probs=169.7
Q ss_pred CCCCcEEEEeccCC-eEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccC
Q 005349 15 GATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (701)
Q Consensus 15 ~~~~~vL~~g~~~g-~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d 93 (701)
++..++++.|.+.| ++|||... +-|.-.++.|...|..+++.... -+.++..
T Consensus 359 SpDgq~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~g---------------~~llssS----------- 411 (893)
T KOG0291|consen 359 SPDGQLIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGVTAVQFTARG---------------NVLLSSS----------- 411 (893)
T ss_pred CCCCcEEEeccCCCcEEEEeccC-ceEEEEeccCCCceEEEEEEecC---------------CEEEEee-----------
Confidence 35577888877665 99999986 77888999999999999986432 1222221
Q ss_pred CcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEE--EEEe--cCCEEEEE-eCC-EEEEEECCCCce
Q 005349 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIY--SVRC--SSRVVAIC-QAA-QVHCFDAATLEI 167 (701)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~--sV~~--s~~~LaVa-~~~-~I~iwDl~t~~~ 167 (701)
.++|||.||++..+.-+|+..|.++. +|+. ++.+|+++ +|. .|++|++.|++.
T Consensus 412 ---------------------LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql 470 (893)
T KOG0291|consen 412 ---------------------LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL 470 (893)
T ss_pred ---------------------cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence 23889999999999999999887765 3444 46666653 333 799999999999
Q ss_pred eEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhch
Q 005349 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (701)
Q Consensus 168 ~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~l 247 (701)
+-.|.+|.. |+. -|++.. . |
T Consensus 471 lDiLsGHEg---------------PVs----~l~f~~-------------~--------------~-------------- 490 (893)
T KOG0291|consen 471 LDILSGHEG---------------PVS----GLSFSP-------------D--------------G-------------- 490 (893)
T ss_pred eehhcCCCC---------------cce----eeEEcc-------------c--------------c--------------
Confidence 888887742 221 112210 0 0
Q ss_pred hceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc-EEEEeecCCCCeEE
Q 005349 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-VIAQFRAHKSPISA 326 (701)
Q Consensus 248 a~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~-~i~~~~~H~~~Is~ 326 (701)
.++++++-|.+|++||+-... .+.++ .+.+.+.+
T Consensus 491 --------------------------------------------~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~ 525 (893)
T KOG0291|consen 491 --------------------------------------------SLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLA 525 (893)
T ss_pred --------------------------------------------CeEEeccccceEEEEEeeccCceeeeE-eeccceeE
Confidence 123345678899999987653 33344 46678999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCC--ceeEE-EEEec--cCCcccEEEEEEcCCCCEEEEEeCC
Q 005349 327 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGT--SYVHL-YRLQR--GLTNAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 327 laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~--~~~~l-~~l~r--G~~~a~I~~iaFSpDg~~lAsgS~d 401 (701)
++|+|||+-||.+.-||. |.+||+..+.. .++..+..+ ..+.. -++-+ ......+..|++|+||++|.+|+..
T Consensus 526 vsfrPdG~elaVaTldgq-Itf~d~~~~~q-~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~s 603 (893)
T KOG0291|consen 526 VSFRPDGKELAVATLDGQ-ITFFDIKEAVQ-VGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGES 603 (893)
T ss_pred EEEcCCCCeEEEEEecce-EEEEEhhhcee-eccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCc
Confidence 999999999999999997 99999987521 101111000 00000 00000 0001128899999999999999999
Q ss_pred CcEEEEecCCCCCceeec
Q 005349 402 GTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 402 gTI~Iwdl~~~g~~~~~~ 419 (701)
..|.||++...--...|+
T Consensus 604 n~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 604 NSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred ccEEEEECchhheeeeEE
Confidence 999999997654444554
No 59
>PTZ00420 coronin; Provisional
Probab=99.64 E-value=1.4e-13 Score=157.82 Aligned_cols=103 Identities=7% Similarity=0.053 Sum_probs=75.2
Q ss_pred cCCCCeEEEEECCCCcEEEEeecCCCCeEE-----EEEcCCCCEEEEEeCCC---cEEEEEEcCCCCCCCCCccCCCCce
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISA-----LCFDPSGILLVTASVQG---HNINIFKIIPGILGTSSACDAGTSY 368 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~-----laFSPdG~lLaTaS~dG---t~I~Iwdl~~~~~~~~s~~~~~~~~ 368 (701)
+..|+.|+|||+++++.+.++.+|.+.+.+ ..|++++.+|+|++.++ +.|+|||++...
T Consensus 185 ~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~------------- 251 (568)
T PTZ00420 185 TCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT------------- 251 (568)
T ss_pred EecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-------------
Confidence 456789999999999999999999976543 34679999999988775 249999998530
Q ss_pred eEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 369 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 369 ~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
..+..+.-......+...-+.++|.++++|+.|++|++|++...
T Consensus 252 ~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 252 SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 22222211112223444555667999999999999999999753
No 60
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.63 E-value=5.6e-13 Score=138.65 Aligned_cols=270 Identities=13% Similarity=0.128 Sum_probs=155.5
Q ss_pred EEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccC
Q 005349 21 LLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACN 100 (701)
Q Consensus 21 L~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~ 100 (701)
+..+.++.+.+||+++ ++....+..+.+ ++.+.+.|+. ..++++...
T Consensus 5 ~s~~~d~~v~~~d~~t-~~~~~~~~~~~~-~~~l~~~~dg--------------~~l~~~~~~----------------- 51 (300)
T TIGR03866 5 VSNEKDNTISVIDTAT-LEVTRTFPVGQR-PRGITLSKDG--------------KLLYVCASD----------------- 51 (300)
T ss_pred EEecCCCEEEEEECCC-CceEEEEECCCC-CCceEECCCC--------------CEEEEEECC-----------------
Confidence 3445567799999976 445555554433 4556665532 133333321
Q ss_pred CCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEE--eCCEEEEEECCCCceeEEEecCCC
Q 005349 101 GTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAILTNPI 176 (701)
Q Consensus 101 g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa--~~~~I~iwDl~t~~~~~tl~t~~~ 176 (701)
+++|++||+++++.++++.....+..+.++ ++.++++ .+++|++||+.+.+.+..+.....
T Consensus 52 ---------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 116 (300)
T TIGR03866 52 ---------------SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE 116 (300)
T ss_pred ---------------CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC
Confidence 167999999999998887765556677775 4556543 478999999999876666542211
Q ss_pred ccCCCCCCCCCcccceeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEc
Q 005349 177 VMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (701)
Q Consensus 177 ~~~~~~~~~~~~~~~piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~l 254 (701)
...++++| ++++++... +..+..+..+..+.+.. ...
T Consensus 117 -------------~~~~~~~~dg~~l~~~~~~--------------------------~~~~~~~d~~~~~~~~~--~~~ 155 (300)
T TIGR03866 117 -------------PEGMAVSPDGKIVVNTSET--------------------------TNMAHFIDTKTYEIVDN--VLV 155 (300)
T ss_pred -------------cceEEECCCCCEEEEEecC--------------------------CCeEEEEeCCCCeEEEE--EEc
Confidence 11244443 455544211 00000000000000000 000
Q ss_pred CCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCC-----C--CeEEE
Q 005349 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK-----S--PISAL 327 (701)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~-----~--~Is~l 327 (701)
+.. + ..+. ..+. |. ..++.+..+|.|++||+.+++.+..+..+. . ....+
T Consensus 156 ~~~-------------~---~~~~-~s~d----g~--~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i 212 (300)
T TIGR03866 156 DQR-------------P---RFAE-FTAD----GK--ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGI 212 (300)
T ss_pred CCC-------------c---cEEE-ECCC----CC--EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccce
Confidence 000 0 0000 0010 10 012344568999999999998877765332 1 23468
Q ss_pred EEcCCCCEEEEE-eCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEe-CCCcEE
Q 005349 328 CFDPSGILLVTA-SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSH 405 (701)
Q Consensus 328 aFSPdG~lLaTa-S~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS-~dgTI~ 405 (701)
+|+|||++++.+ ..+++ |.+||+.++ +.+..+..+ ..+.+++|+|||++|++++ .+|+|+
T Consensus 213 ~~s~dg~~~~~~~~~~~~-i~v~d~~~~--------------~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 213 KLTKDGKTAFVALGPANR-VAVVDAKTY--------------EVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred EECCCCCEEEEEcCCCCe-EEEEECCCC--------------cEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEE
Confidence 999999986554 33444 899999865 333333222 2488999999999999864 689999
Q ss_pred EEecCCCCCceeecC
Q 005349 406 LFAINPLGGSVNFQP 420 (701)
Q Consensus 406 Iwdl~~~g~~~~~~~ 420 (701)
|||+........++.
T Consensus 275 v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 275 VIDVAALKVIKSIKV 289 (300)
T ss_pred EEECCCCcEEEEEEc
Confidence 999998655455543
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=1.8e-14 Score=155.41 Aligned_cols=234 Identities=19% Similarity=0.281 Sum_probs=160.7
Q ss_pred eeceeeecCCCC--CCcEEEEeccCC-eEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEe
Q 005349 5 AGFDKLESEAGA--TRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCA 81 (701)
Q Consensus 5 ~~fd~l~~~~~~--~~~vL~~g~~~g-~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~ 81 (701)
+.|++-..+... ..++|+.|-..| +||||..+ -.....+..|..||+.++|.|... -+++.++
T Consensus 65 srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~d~-------------t~l~s~s 130 (487)
T KOG0310|consen 65 SRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQDN-------------TMLVSGS 130 (487)
T ss_pred HhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHHHHHhhccCceeEEEecccCC-------------eEEEecC
Confidence 456554444432 267788877766 99999544 334455567999999999977321 1233333
Q ss_pred CCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe-cCCCEEEEEec---CCEEEE-EeCCE
Q 005349 82 DGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS---SRVVAI-CQAAQ 156 (701)
Q Consensus 82 ~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~-f~s~V~sV~~s---~~~LaV-a~~~~ 156 (701)
| ++++++||+.+.....+|. +..-|++.+|+ +++|+. +.|++
T Consensus 131 D---------------------------------d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 131 D---------------------------------DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred C---------------------------------CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence 2 1789999999998644555 36789999996 457776 68999
Q ss_pred EEEEECCCC-ceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcc
Q 005349 157 VHCFDAATL-EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSR 235 (701)
Q Consensus 157 I~iwDl~t~-~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~ 235 (701)
|++||+++. ..+.++. | ++| +. +.|+-+ +|++
T Consensus 178 vrl~DtR~~~~~v~eln-h----g~p-----------Ve---~vl~lp----------------------------sgs~ 210 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVELN-H----GCP-----------VE---SVLALP----------------------------SGSL 210 (487)
T ss_pred EEEEEeccCCceeEEec-C----CCc-----------ee---eEEEcC----------------------------CCCE
Confidence 999999987 4444442 2 221 10 111211 0111
Q ss_pred eeehhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC-cEE
Q 005349 236 VAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVI 314 (701)
Q Consensus 236 v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~-~~i 314 (701)
+ +++ .-..|+|||+.+| +.+
T Consensus 211 i----------------------------------------------------------asA-gGn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 211 I----------------------------------------------------------ASA-GGNSVKVWDLTTGGQLL 231 (487)
T ss_pred E----------------------------------------------------------EEc-CCCeEEEEEecCCceeh
Confidence 1 111 1136999999955 555
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCE
Q 005349 315 AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 394 (701)
Q Consensus 315 ~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~ 394 (701)
..+..|...|+||+|..+++.|.||+-||+ ++|||+... ..++.+. -++.|.+|+.|||++.
T Consensus 232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~--------------Kvv~s~~---~~~pvLsiavs~dd~t 293 (487)
T KOG0310|consen 232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNY--------------KVVHSWK---YPGPVLSIAVSPDDQT 293 (487)
T ss_pred hhhhcccceEEEEEeecCCceEeecccccc-eEEEEccce--------------EEEEeee---cccceeeEEecCCCce
Confidence 566669999999999999999999999998 899997654 4445542 2456999999999999
Q ss_pred EEEEeCCCcEEEEec
Q 005349 395 IMISSSRGTSHLFAI 409 (701)
Q Consensus 395 lAsgS~dgTI~Iwdl 409 (701)
+++|-.+|.+-+=+.
T Consensus 294 ~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 294 VVIGMSNGLVSIRRR 308 (487)
T ss_pred EEEecccceeeeehh
Confidence 999999999877643
No 62
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=8e-15 Score=166.25 Aligned_cols=202 Identities=14% Similarity=0.196 Sum_probs=149.8
Q ss_pred cEEEEEECCCCcEEEEEe-cCCCEEEEEecC--CEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~-f~s~V~sV~~s~--~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
++|++||.+-|.+++.+. +.++|+.|+|.+ -+++. +.|.+|+||+..+-+|+++|.+|-+.
T Consensus 31 G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY--------------- 95 (1202)
T KOG0292|consen 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY--------------- 95 (1202)
T ss_pred ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce---------------
Confidence 679999999999999774 688999999963 45555 55779999999999999999887321
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
+ |-+.|. ++ |
T Consensus 96 V----Rt~~FH-------------he----------------------------------------------y------- 105 (1202)
T KOG0292|consen 96 V----RTVFFH-------------HE----------------------------------------------Y------- 105 (1202)
T ss_pred e----EEeecc-------------CC----------------------------------------------C-------
Confidence 0 222221 00 0
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~ 352 (701)
+ =+.++++|-+|+||+..++++++.+.+|.+.|.|.+|.|...++++||-|.+ |||||+.
T Consensus 106 ----------P---------WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT-VRVWDis 165 (1202)
T KOG0292|consen 106 ----------P---------WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT-VRVWDIS 165 (1202)
T ss_pred ----------c---------eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce-EEEEeec
Confidence 0 1234567889999999999999999999999999999999999999999987 9999985
Q ss_pred CCCC---CCCC-------------ccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCC--
Q 005349 353 PGIL---GTSS-------------ACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG-- 414 (701)
Q Consensus 353 ~~~~---~~~s-------------~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~-- 414 (701)
--.. .+++ .++.- ...--+.| .||+.. |.-++|.|.-..|++|++|+-|++|.++..+.
T Consensus 166 GLRkk~~~pg~~e~~~~~~~~~~dLfg~~-DaVVK~VL-EGHDRG-VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE 242 (1202)
T KOG0292|consen 166 GLRKKNKAPGSLEDQMRGQQGNSDLFGQT-DAVVKHVL-EGHDRG-VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE 242 (1202)
T ss_pred chhccCCCCCCchhhhhccccchhhcCCc-Ceeeeeee-cccccc-cceEEecCCcceEEecCCcceeeEEEecccccee
Confidence 3211 0111 11111 22222344 476643 89999999999999999999999999986542
Q ss_pred ceeecCCCCCcc
Q 005349 415 SVNFQPTDANFT 426 (701)
Q Consensus 415 ~~~~~~H~~~~~ 426 (701)
.-+.++|.++++
T Consensus 243 vDtcrgH~nnVs 254 (1202)
T KOG0292|consen 243 VDTCRGHYNNVS 254 (1202)
T ss_pred ehhhhcccCCcc
Confidence 224577776655
No 63
>PTZ00420 coronin; Provisional
Probab=99.62 E-value=1.1e-13 Score=158.55 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=83.2
Q ss_pred ccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe
Q 005349 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~ 375 (701)
++..||+|+|||+.+++.+..+. |...|.+++|+|+|.+|++++.|++ |+|||++++ ..+.++.
T Consensus 143 SgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg--------------~~i~tl~ 206 (568)
T PTZ00420 143 SSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQ--------------EIASSFH 206 (568)
T ss_pred EEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCC--------------cEEEEEe
Confidence 45678999999999998877776 5678999999999999999999987 999999876 4445553
Q ss_pred ccCCcc----cEEEEEEcCCCCEEEEEeCCC----cEEEEecCCCCCceee
Q 005349 376 RGLTNA----VIQDISFSDDSNWIMISSSRG----TSHLFAINPLGGSVNF 418 (701)
Q Consensus 376 rG~~~a----~I~~iaFSpDg~~lAsgS~dg----TI~Iwdl~~~g~~~~~ 418 (701)
+|... .++...|++|+++|++++.|+ +|+|||+...+.+...
T Consensus 207 -gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~ 256 (568)
T PTZ00420 207 -IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT 256 (568)
T ss_pred -cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE
Confidence 44332 144556789999999988764 7999999976655543
No 64
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.61 E-value=2.5e-15 Score=158.90 Aligned_cols=243 Identities=17% Similarity=0.282 Sum_probs=178.8
Q ss_pred eecee-eecCCCCC--------CcEEEEeccCC-eEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCC
Q 005349 5 AGFDK-LESEAGAT--------RRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVR 74 (701)
Q Consensus 5 ~~fd~-l~~~~~~~--------~~vL~~g~~~g-~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~r 74 (701)
..|++ |..|++++ ..-++.|-.+| +++|+.+- +++..+-..|...||++++.|+- ..|
T Consensus 128 fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnD-------skF---- 195 (464)
T KOG0284|consen 128 FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPND-------SKF---- 195 (464)
T ss_pred eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCC-------cee----
Confidence 44666 45566644 56677777666 89999875 45665555667999999998842 223
Q ss_pred CEEEEEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCC-CEEEEEec--CCEEEE
Q 005349 75 PLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS-PIYSVRCS--SRVVAI 151 (701)
Q Consensus 75 pllavv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s-~V~sV~~s--~~~LaV 151 (701)
+-|++ +++|+|||..-.+.-..|..++ .|.++++- +.+||+
T Consensus 196 ---~t~Sd---------------------------------Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLias 239 (464)
T KOG0284|consen 196 ---LTCSD---------------------------------DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIAS 239 (464)
T ss_pred ---EEecC---------------------------------CCeEEEEeccCCchhheeccCCCCcceeccCCccceeEE
Confidence 33443 2789999999888777777654 78999996 457777
Q ss_pred -EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCccccccccccccc
Q 005349 152 -CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFA 230 (701)
Q Consensus 152 -a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~ 230 (701)
+-|+.|++||.++++|+-++..|.+. .+++ -|. |
T Consensus 240 gskDnlVKlWDprSg~cl~tlh~HKnt--------------Vl~~-----~f~-------------~------------- 274 (464)
T KOG0284|consen 240 GSKDNLVKLWDPRSGSCLATLHGHKNT--------------VLAV-----KFN-------------P------------- 274 (464)
T ss_pred ccCCceeEeecCCCcchhhhhhhccce--------------EEEE-----EEc-------------C-------------
Confidence 45779999999999999998887542 1221 111 0
Q ss_pred CCCcceeehhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCC
Q 005349 231 SNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS 310 (701)
Q Consensus 231 s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s 310 (701)
++ + -+++++.|..++++|+++
T Consensus 275 -n~------------------------------N----------------------------~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 275 -NG------------------------------N----------------------------WLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred -CC------------------------------C----------------------------eeEEccCCceEEEEehhH
Confidence 00 0 123456678999999999
Q ss_pred CcEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEc
Q 005349 311 KNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFS 389 (701)
Q Consensus 311 ~~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFS 389 (701)
.+.+..+++|+..|.++.++| .-.+|.+++.||. |..|.+... +.+-.+.-++.. .|++++|.
T Consensus 296 mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~--------------~p~~~i~~AHd~-~iwsl~~h 359 (464)
T KOG0284|consen 296 MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLE--------------EPLGEIPPAHDG-EIWSLAYH 359 (464)
T ss_pred hHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEecccc--------------ccccCCCccccc-ceeeeecc
Confidence 999999999999999999999 6789999999997 899988632 223333334432 49999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCc
Q 005349 390 DDSNWIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 390 pDg~~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
|=|..||+||.|.|++.|.-...+..
T Consensus 360 PlGhil~tgsnd~t~rfw~r~rp~d~ 385 (464)
T KOG0284|consen 360 PLGHILATGSNDRTVRFWTRNRPGDK 385 (464)
T ss_pred ccceeEeecCCCcceeeeccCCCCCc
Confidence 99999999999999999987765443
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.61 E-value=5.3e-15 Score=156.62 Aligned_cols=234 Identities=11% Similarity=0.137 Sum_probs=163.4
Q ss_pred CcEEEEeccCCeEEEEecCCC-CeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGYRSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~-~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
..+...|.+.-+++|++.... +....+++..|++..+.+-+.. +-.|| ..
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~-------------~~~iA--as-------------- 238 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDN-------------KHVIA--AS-------------- 238 (459)
T ss_pred chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCC-------------ceEEe--ec--------------
Confidence 456667788889999997532 1223333455667766653210 11222 10
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecC---CEEEEEeCCEEEEEECCCCceeEEEe
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---RVVAICQAAQVHCFDAATLEIEYAIL 172 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~---~~LaVa~~~~I~iwDl~t~~~~~tl~ 172 (701)
.++.+++|++.+.+..+||.. ...|.++.|.. ++|..+.|.+|+.||+....|..++.
T Consensus 239 ------------------~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l 300 (459)
T KOG0288|consen 239 ------------------NDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL 300 (459)
T ss_pred ------------------CCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc
Confidence 237799999999999999985 67999999952 32333678899999999877665543
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeE
Q 005349 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (701)
Q Consensus 173 t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~ 252 (701)
.-+. .+.|.++
T Consensus 301 ~~S~-------------cnDI~~~-------------------------------------------------------- 311 (459)
T KOG0288|consen 301 PGSQ-------------CNDIVCS-------------------------------------------------------- 311 (459)
T ss_pred cccc-------------ccceEec--------------------------------------------------------
Confidence 2111 0011100
Q ss_pred EcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCC
Q 005349 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (701)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd 332 (701)
.-.+.++..|++|+.||+++..+......|. .|++|..+++
T Consensus 312 --------------------------------------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~ 352 (459)
T KOG0288|consen 312 --------------------------------------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMD 352 (459)
T ss_pred --------------------------------------ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccC
Confidence 0012234568899999999999999999886 9999999999
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 333 G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
|..|.+++.|.+ ++++|+.+. ...+.+.-.--.+...+..++||||+.|+|+||.||.|+||++.+.
T Consensus 353 g~~lLsssRDdt-l~viDlRt~------------eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 353 GLELLSSSRDDT-LKVIDLRTK------------EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CeEEeeecCCCc-eeeeecccc------------cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 999999999987 899999876 2344444321112334888999999999999999999999999887
Q ss_pred CCceeec
Q 005349 413 GGSVNFQ 419 (701)
Q Consensus 413 g~~~~~~ 419 (701)
+.+..+.
T Consensus 420 KlE~~l~ 426 (459)
T KOG0288|consen 420 KLEKVLS 426 (459)
T ss_pred eEEEEec
Confidence 6665554
No 66
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=4.4e-14 Score=140.63 Aligned_cols=182 Identities=16% Similarity=0.164 Sum_probs=139.6
Q ss_pred cEEEEEECCCCcEEEEEecC-CCEEEEEec---CCEEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLKFR-SPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~-s~V~sV~~s---~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
++||+|+...|.++++..-. ..|..++.+ .++-+.+.|+.|.+||..|++.++.+.+|.. .+|.
T Consensus 39 rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a------------qVNt 106 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA------------QVNT 106 (307)
T ss_pred ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccc------------eeeE
Confidence 89999999999999999864 589888874 4444457899999999999999999988731 2233
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
+ +|... +.
T Consensus 107 V-------~fNee----------------------------sS------------------------------------- 114 (307)
T KOG0316|consen 107 V-------RFNEE----------------------------SS------------------------------------- 114 (307)
T ss_pred E-------EecCc----------------------------ce-------------------------------------
Confidence 3 23210 00
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC--cEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 350 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~--~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwd 350 (701)
.+++++-|..+++||-++. ++++.|..-...|.++..+ +..+++||.||+ +|.||
T Consensus 115 --------------------Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt-vRtyd 171 (307)
T KOG0316|consen 115 --------------------VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT-VRTYD 171 (307)
T ss_pred --------------------EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc-EEEEE
Confidence 1123456788999998875 6888888888899888765 789999999998 89999
Q ss_pred cCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCC
Q 005349 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (701)
Q Consensus 351 l~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~ 423 (701)
++.+ ...-. .-| ..|+|++||+||+.+.+++.|+|+|+.|-.+++-.....+|.+
T Consensus 172 iR~G--------------~l~sD-y~g---~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn 226 (307)
T KOG0316|consen 172 IRKG--------------TLSSD-YFG---HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN 226 (307)
T ss_pred eecc--------------eeehh-hcC---CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc
Confidence 9987 22111 123 3599999999999999999999999999887655556778743
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=3.9e-14 Score=142.33 Aligned_cols=231 Identities=14% Similarity=0.214 Sum_probs=157.8
Q ss_pred CCeEEEEecCCCCeeEEeeec-cCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCC
Q 005349 27 SGFQVWDVEEADNVHDLVSRY-DGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSAN 105 (701)
Q Consensus 27 ~g~qVwdv~~~~~~~elvs~~-dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~ 105 (701)
+.+-|.++++...++|..+.. ...+..++..++. ...++.|.+
T Consensus 38 G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~-------------e~~~~~a~G----------------------- 81 (311)
T KOG0277|consen 38 GRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENH-------------ENQVIAASG----------------------- 81 (311)
T ss_pred ceEEEEecCCCCCeEEEEeeecccceeEeeecCCC-------------cceEEEEec-----------------------
Confidence 346677776556677777742 4556667766531 123433432
Q ss_pred CCCCCCCCCCCcEEEEEECCC-CcEEEEEe-cCCCEEEEEec---CCEE-EEEeCCEEEEEECCCCceeEEEecCCCccC
Q 005349 106 YHDLGNGSSVPTVVHFYSLRS-QSYVHMLK-FRSPIYSVRCS---SRVV-AICQAAQVHCFDAATLEIEYAILTNPIVMG 179 (701)
Q Consensus 106 ~~~~~~~~~~~~tVriWdl~t-g~~v~tL~-f~s~V~sV~~s---~~~L-aVa~~~~I~iwDl~t~~~~~tl~t~~~~~~ 179 (701)
++++||||+.- ...++.++ +...|++|.+| ++.+ ..+=|++|++||..-.+.+.|..+|.+
T Consensus 82 ----------DGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~--- 148 (311)
T KOG0277|consen 82 ----------DGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS--- 148 (311)
T ss_pred ----------CceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCcc---
Confidence 16699999643 24555554 57799999997 3334 346699999999988877777766522
Q ss_pred CCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccc
Q 005349 180 HPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGY 259 (701)
Q Consensus 180 ~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~ 259 (701)
+.|.. . .+|.
T Consensus 149 --------------------~Iy~a----~-----~sp~----------------------------------------- 158 (311)
T KOG0277|consen 149 --------------------CIYQA----A-----FSPH----------------------------------------- 158 (311)
T ss_pred --------------------EEEEE----e-----cCCC-----------------------------------------
Confidence 11210 0 0000
Q ss_pred eecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC-CCCEEEE
Q 005349 260 KKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVT 338 (701)
Q Consensus 260 ~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP-dG~lLaT 338 (701)
..+.+++++.||+.+|||++....-..|.+|...|.|+.|+. +-.+|+|
T Consensus 159 ------------------------------~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~T 208 (311)
T KOG0277|consen 159 ------------------------------IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLAT 208 (311)
T ss_pred ------------------------------CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEe
Confidence 001334566789999999986433344999999999999999 7889999
Q ss_pred EeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCce-
Q 005349 339 ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSV- 416 (701)
Q Consensus 339 aS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~~g~~~- 416 (701)
|+.|+. ||+||++.. ..++.+| .|+.-| |..+.||| ....||++|-|.|++|||......-.
T Consensus 209 g~vd~~-vr~wDir~~-------------r~pl~eL-~gh~~A-VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e 272 (311)
T KOG0277|consen 209 GGVDNL-VRGWDIRNL-------------RTPLFEL-NGHGLA-VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE 272 (311)
T ss_pred cCCCce-EEEEehhhc-------------cccceee-cCCceE-EEEEecCcchhhHhhhccccceEEecccccchhhhh
Confidence 999986 999999875 2456777 466544 99999999 56789999999999999998554433
Q ss_pred eecCCC
Q 005349 417 NFQPTD 422 (701)
Q Consensus 417 ~~~~H~ 422 (701)
+..-|+
T Consensus 273 ~~~~Ht 278 (311)
T KOG0277|consen 273 TVDHHT 278 (311)
T ss_pred hhhccc
Confidence 334443
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.60 E-value=1.3e-15 Score=156.64 Aligned_cols=124 Identities=22% Similarity=0.367 Sum_probs=106.8
Q ss_pred ccccCCCCeEEEEECCCCcEEEEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 294 FPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~i~~~~-~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
++++..||.|+||.+.+|.+++.|. +|+..|+|+.||.|+..+.++|.|.+ +||--++.| +++.
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~t-vRiHGlKSG--------------K~LK 342 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQT-VRIHGLKSG--------------KCLK 342 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccce-EEEeccccc--------------hhHH
Confidence 3457789999999999999999998 99999999999999999999999976 999999887 7777
Q ss_pred EEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcccccCCCcccccccC
Q 005349 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWP 440 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~~~~~~~~~~~~~~~~~ 440 (701)
++ |||.. -|....|++||.++.++|+||||+||+..+..+..+|+.-. ++.++|++..+|
T Consensus 343 Ef-rGHsS-yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~------~d~~vnsv~~~P 402 (508)
T KOG0275|consen 343 EF-RGHSS-YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG------TDYPVNSVILLP 402 (508)
T ss_pred Hh-cCccc-cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC------CcccceeEEEcC
Confidence 77 68764 49999999999999999999999999999988888887532 355666654433
No 69
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=4e-13 Score=136.18 Aligned_cols=176 Identities=18% Similarity=0.281 Sum_probs=135.5
Q ss_pred cEEEEEECCCC---cEEEEEe--cCCCEEEEEec--CCEEEE-EeCCEEEEEECC--CCceeEEEecCCCccCCCCCCCC
Q 005349 117 TVVHFYSLRSQ---SYVHMLK--FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAA--TLEIEYAILTNPIVMGHPSAGGI 186 (701)
Q Consensus 117 ~tVriWdl~tg---~~v~tL~--f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~--t~~~~~tl~t~~~~~~~~~~~~~ 186 (701)
++||+|++..+ .|...|. +...|++|+++ +++||+ ++|.++.||-=. +++++.+|++|.+..-
T Consensus 37 k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK------- 109 (312)
T KOG0645|consen 37 KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK------- 109 (312)
T ss_pred ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee-------
Confidence 88999999854 3444443 46799999996 689988 689999999654 5788999999866421
Q ss_pred CcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccc
Q 005349 187 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 266 (701)
Q Consensus 187 ~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~ 266 (701)
.+|++. +|.
T Consensus 110 ------------~Vaws~---------------------------sG~-------------------------------- 118 (312)
T KOG0645|consen 110 ------------CVAWSA---------------------------SGN-------------------------------- 118 (312)
T ss_pred ------------EEEEcC---------------------------CCC--------------------------------
Confidence 123321 011
Q ss_pred ccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC---cEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC
Q 005349 267 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGILLVTASVQG 343 (701)
Q Consensus 267 ~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~---~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG 343 (701)
.+++...|..|-||.+... .++..|+.|+.-|--+.|+|.-.+|+|+|.|.
T Consensus 119 --------------------------~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 119 --------------------------YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN 172 (312)
T ss_pred --------------------------EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC
Confidence 1223445677999988743 58899999999999999999999999999998
Q ss_pred cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 344 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 344 t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
+ |++|+-.++ ..-.+..+|. |+++ .|++++|.+.|..|+++++|+|++||.+-
T Consensus 173 T-Ik~~~~~~d-----------ddW~c~~tl~-g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 173 T-IKVYRDEDD-----------DDWECVQTLD-GHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred e-EEEEeecCC-----------CCeeEEEEec-Cccc-eEEEEEecCCCceEEEecCCcceEeeeec
Confidence 7 999987643 1336777774 5544 59999999999999999999999999965
No 70
>PTZ00421 coronin; Provisional
Probab=99.59 E-value=2.5e-13 Score=154.24 Aligned_cols=107 Identities=18% Similarity=0.243 Sum_probs=88.3
Q ss_pred cccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
+++..||.|+|||+.+++.+..+.+|...|.+|+|+|+|.+|||++.||+ |+|||++++ ..+.++
T Consensus 142 aSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~-IrIwD~rsg--------------~~v~tl 206 (493)
T PTZ00421 142 ASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK-LNIIDPRDG--------------TIVSSV 206 (493)
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE-EEEEECCCC--------------cEEEEE
Confidence 44567899999999999999999999999999999999999999999997 999999876 455565
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEe----CCCcEEEEecCCCCCcee
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISS----SRGTSHLFAINPLGGSVN 417 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS----~dgTI~Iwdl~~~g~~~~ 417 (701)
. ++....+..+.|.+++..|++++ .|++|+|||+.....+..
T Consensus 207 ~-~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 207 E-AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred e-cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 3 44444567788999888877654 489999999987655443
No 71
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.4e-13 Score=153.01 Aligned_cols=242 Identities=18% Similarity=0.243 Sum_probs=178.4
Q ss_pred CCcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 17 ~~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
...+|++|....+-+|+-.. +.+.++...+...|..+.+.+.+ ..||+-..
T Consensus 187 s~n~laValg~~vylW~~~s-~~v~~l~~~~~~~vtSv~ws~~G--------------~~LavG~~-------------- 237 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSASS-GSVTELCSFGEELVTSVKWSPDG--------------SHLAVGTS-------------- 237 (484)
T ss_pred cCCeEEEEecceEEEEecCC-CceEEeEecCCCceEEEEECCCC--------------CEEEEeec--------------
Confidence 36799999999999999987 77899999878899999887643 24554432
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec--CCCEEEEEecCCEEEE-EeCCEEEEEECCCCceeEE-Ee
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF--RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYA-IL 172 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f--~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t~~~~~t-l~ 172 (701)
.++|.|||.++.+.+.++.. ...|-+++++..++.. ..++.|..+|++..+.... +.
T Consensus 238 -------------------~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~ 298 (484)
T KOG0305|consen 238 -------------------DGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQ 298 (484)
T ss_pred -------------------CCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhh
Confidence 17799999999999999987 6789999999877776 6789999999998764433 32
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeE
Q 005349 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (701)
Q Consensus 173 t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~ 252 (701)
.|... . +. |+++.
T Consensus 299 ~H~qe--V------------Cg-----Lkws~------------------------------------------------ 311 (484)
T KOG0305|consen 299 GHRQE--V------------CG-----LKWSP------------------------------------------------ 311 (484)
T ss_pred cccce--e------------ee-----eEECC------------------------------------------------
Confidence 22110 0 00 11110
Q ss_pred EcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC-
Q 005349 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP- 331 (701)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP- 331 (701)
+ ...+++++.|..+.|||.....++..+..|+..|-+|+|+|
T Consensus 312 -------------------d------------------~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~ 354 (484)
T KOG0305|consen 312 -------------------D------------------GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPW 354 (484)
T ss_pred -------------------C------------------CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCC
Confidence 0 01334567899999999988899999999999999999999
Q ss_pred CCCEEEEEe--CCCcEEEEEEcCCCCC------CCC--------------CccCCCCceeEEEEE--------eccCCcc
Q 005349 332 SGILLVTAS--VQGHNINIFKIIPGIL------GTS--------------SACDAGTSYVHLYRL--------QRGLTNA 381 (701)
Q Consensus 332 dG~lLaTaS--~dGt~I~Iwdl~~~~~------~~~--------------s~~~~~~~~~~l~~l--------~rG~~~a 381 (701)
...+||||+ .|++ |++||+.++.. +.. ++.+.......+|++ .-||+ .
T Consensus 355 q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~-~ 432 (484)
T KOG0305|consen 355 QSGLLATGGGSADRC-IKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT-S 432 (484)
T ss_pred ccCceEEcCCCcccE-EEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc-c
Confidence 788999964 5766 99999988732 110 001112222233433 13543 5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 382 VIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 382 ~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
+|..+++||||..+++|+.|.|+++|++-+.
T Consensus 433 RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 433 RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 6999999999999999999999999999664
No 72
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.58 E-value=2.5e-13 Score=142.31 Aligned_cols=235 Identities=12% Similarity=0.180 Sum_probs=161.3
Q ss_pred CCCcEEEEeccCC-eEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 16 ATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 16 ~~~~vL~~g~~~g-~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
+...+|+.|...| +.+|.+.. ....+++++|..++.+-+++|++ + .+ +++.
T Consensus 158 p~a~illAG~~DGsvWmw~ip~-~~~~kv~~Gh~~~ct~G~f~pdG------------K--r~-~tgy------------ 209 (399)
T KOG0296|consen 158 PRAHILLAGSTDGSVWMWQIPS-QALCKVMSGHNSPCTCGEFIPDG------------K--RI-LTGY------------ 209 (399)
T ss_pred ccccEEEeecCCCcEEEEECCC-cceeeEecCCCCCcccccccCCC------------c--eE-EEEe------------
Confidence 3567777777666 89999987 46888999999999999999853 1 12 2221
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCC--CEEEEEec--CCEEEE-EeCCEEEEEECCCCceeE
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS--PIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEY 169 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s--~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~ 169 (701)
.+++|++||++||+.++.+.-.. .-..+.++ +..+.. ..++.+++-+..+++.+.
T Consensus 210 --------------------~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 210 --------------------DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred --------------------cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 12789999999999999997311 22234443 444444 456678888888887665
Q ss_pred EEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhc
Q 005349 170 AILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (701)
Q Consensus 170 tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~ 249 (701)
..... .| . + .+- .+++..+..+.+
T Consensus 270 ~~n~~-----~~-----------~-l----~~~--------------~e~~~esve~~~--------------------- 293 (399)
T KOG0296|consen 270 CNNGT-----VP-----------E-L----KPS--------------QEELDESVESIP--------------------- 293 (399)
T ss_pred ecCCC-----Cc-----------c-c----ccc--------------chhhhhhhhhcc---------------------
Confidence 54321 00 0 0 000 001110000000
Q ss_pred eeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEE
Q 005349 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (701)
Q Consensus 250 gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laF 329 (701)
.+. . -...+.+.-||+|.|||+.+.++ ++.-.|..+|..|.|
T Consensus 294 ---------------~ss------------~----------lpL~A~G~vdG~i~iyD~a~~~~-R~~c~he~~V~~l~w 335 (399)
T KOG0296|consen 294 ---------------SSS------------K----------LPLAACGSVDGTIAIYDLAASTL-RHICEHEDGVTKLKW 335 (399)
T ss_pred ---------------ccc------------c----------cchhhcccccceEEEEecccchh-heeccCCCceEEEEE
Confidence 000 0 01233456789999999988754 555679999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 330 DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 330 SPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
-+ -.+|+||+.+|+ ||+||.++| .+++++ +||. ..|++++.+||.++++++|.|++.+||++
T Consensus 336 ~~-t~~l~t~c~~g~-v~~wDaRtG--------------~l~~~y-~GH~-~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 336 LN-TDYLLTACANGK-VRQWDARTG--------------QLKFTY-TGHQ-MGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred cC-cchheeeccCce-EEeeecccc--------------ceEEEE-ecCc-hheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 99 778899999997 999999998 566665 5765 56999999999999999999999999987
Q ss_pred C
Q 005349 410 N 410 (701)
Q Consensus 410 ~ 410 (701)
.
T Consensus 398 ~ 398 (399)
T KOG0296|consen 398 P 398 (399)
T ss_pred C
Confidence 4
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.56 E-value=1.1e-13 Score=149.30 Aligned_cols=229 Identities=17% Similarity=0.237 Sum_probs=160.7
Q ss_pred EEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccccc
Q 005349 20 VLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATAC 99 (701)
Q Consensus 20 vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~ 99 (701)
=+++..+-++|+|+.... .+...+++-+..|..+.|=.+ --||| ++|.+
T Consensus 41 d~aVt~S~rvqly~~~~~-~~~k~~srFk~~v~s~~fR~D--------------G~Lla-aGD~s--------------- 89 (487)
T KOG0310|consen 41 DFAVTSSVRVQLYSSVTR-SVRKTFSRFKDVVYSVDFRSD--------------GRLLA-AGDES--------------- 89 (487)
T ss_pred ceEEecccEEEEEecchh-hhhhhHHhhccceeEEEeecC--------------CeEEE-ccCCc---------------
Confidence 456666788999998763 466666666666776665322 23554 44322
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecC---CEEEEEe-CCEEEEEECCCCceeEEEecC
Q 005349 100 NGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---RVVAICQ-AAQVHCFDAATLEIEYAILTN 174 (701)
Q Consensus 100 ~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~---~~LaVa~-~~~I~iwDl~t~~~~~tl~t~ 174 (701)
+.|++||+++...+.+++- ..+|..+.|.+ .+++.+. |..+++||+.+......+.+|
T Consensus 90 -----------------G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h 152 (487)
T KOG0310|consen 90 -----------------GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH 152 (487)
T ss_pred -----------------CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC
Confidence 6799999888777777654 67999999973 4555554 567899999998765566665
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEc
Q 005349 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (701)
Q Consensus 175 ~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~l 254 (701)
.+.. |..++. |.
T Consensus 153 tDYV-------------------R~g~~~-------------~~------------------------------------ 164 (487)
T KOG0310|consen 153 TDYV-------------------RCGDIS-------------PA------------------------------------ 164 (487)
T ss_pred ccee-------------------Eeeccc-------------cC------------------------------------
Confidence 4310 111111 00
Q ss_pred CCccceecccccccccCCCCCccccccCCCCCCCcccc-cccccCCCCeEEEEECCCC-cEEEEeecCCCCeEEEEEcCC
Q 005349 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNG-HFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPS 332 (701)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~-~~~~~~~dG~V~IwDl~s~-~~i~~~~~H~~~Is~laFSPd 332 (701)
++ .+++++.||+|++||+++. ..+.+| .|..||..+.|=|+
T Consensus 165 ------------------------------------~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lps 207 (487)
T KOG0310|consen 165 ------------------------------------NDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPS 207 (487)
T ss_pred ------------------------------------CCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCC
Confidence 11 1346788999999999987 444444 68889999999999
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 333 G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
|.++|||+ |..|+|||+.+|. ..++.+ ..++-.|+|+++..|++.|.+++.|+.++|||+..+
T Consensus 208 gs~iasAg--Gn~vkVWDl~~G~-------------qll~~~--~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 208 GSLIASAG--GNSVKVWDLTTGG-------------QLLTSM--FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred CCEEEEcC--CCeEEEEEecCCc-------------eehhhh--hcccceEEEEEeecCCceEeecccccceEEEEccce
Confidence 99999998 5679999998761 333333 323445999999999999999999999999998877
Q ss_pred CCceee
Q 005349 413 GGSVNF 418 (701)
Q Consensus 413 g~~~~~ 418 (701)
.-...+
T Consensus 271 Kvv~s~ 276 (487)
T KOG0310|consen 271 KVVHSW 276 (487)
T ss_pred EEEEee
Confidence 544444
No 74
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=3.5e-12 Score=129.42 Aligned_cols=239 Identities=15% Similarity=0.253 Sum_probs=157.5
Q ss_pred EEEEeccCCeEEEEecCCC--CeeEEee-eccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 20 VLLLGYRSGFQVWDVEEAD--NVHDLVS-RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 20 vL~~g~~~g~qVwdv~~~~--~~~elvs-~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
+...|.++.++||+..... .++.+++ .|...||.++..|-. .+||..+-
T Consensus 30 lAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g--------------~~La~aSF-------------- 81 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG--------------RYLASASF-------------- 81 (312)
T ss_pred EEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC--------------cEEEEeec--------------
Confidence 3344566779999998411 3344443 577889999988742 24553332
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCC--cEEEEEec-CCCEEEEEec--CCEEEEE-eCCEEEEEECCCC---ce
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQ--SYVHMLKF-RSPIYSVRCS--SRVVAIC-QAAQVHCFDAATL---EI 167 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg--~~v~tL~f-~s~V~sV~~s--~~~LaVa-~~~~I~iwDl~t~---~~ 167 (701)
+.|+.||--..+ +++.+|+. .+.|.+|+|+ +++||.+ -|+.|.||.+... ++
T Consensus 82 -------------------D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 82 -------------------DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred -------------------cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEE
Confidence 277889976644 68999986 6799999996 7999985 5889999988743 33
Q ss_pred eEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhch
Q 005349 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (701)
Q Consensus 168 ~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~l 247 (701)
...|..|.. -|.++.+..++
T Consensus 143 ~aVL~~Htq----------------------------------------------------------DVK~V~WHPt~-- 162 (312)
T KOG0645|consen 143 IAVLQEHTQ----------------------------------------------------------DVKHVIWHPTE-- 162 (312)
T ss_pred Eeeeccccc----------------------------------------------------------cccEEEEcCCc--
Confidence 333333311 01111111111
Q ss_pred hceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECC---CCcEEEEeecCCCCe
Q 005349 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV---SKNVIAQFRAHKSPI 324 (701)
Q Consensus 248 a~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~---s~~~i~~~~~H~~~I 324 (701)
..+++++.|.+|++|+-. .-.++++|.+|+..|
T Consensus 163 --------------------------------------------dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TV 198 (312)
T KOG0645|consen 163 --------------------------------------------DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTV 198 (312)
T ss_pred --------------------------------------------ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceE
Confidence 123345678899999766 236899999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCC------------C-ccCCCCceeEEEEEec--------------c
Q 005349 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTS------------S-ACDAGTSYVHLYRLQR--------------G 377 (701)
Q Consensus 325 s~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~------------s-~~~~~~~~~~l~~l~r--------------G 377 (701)
-+++|+|+|..|++|+.|++ ++||.....-.+.. . +.+.......+++-.- +
T Consensus 199 W~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~ 277 (312)
T KOG0645|consen 199 WSLAFDNIGSRLVSCSDDGT-VSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEG 277 (312)
T ss_pred EEEEecCCCceEEEecCCcc-eEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhc
Confidence 99999999999999999998 89998554311111 1 1111111122222111 1
Q ss_pred CCcccEEEEEEcCC-CCEEEEEeCCCcEEEEecC
Q 005349 378 LTNAVIQDISFSDD-SNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 378 ~~~a~I~~iaFSpD-g~~lAsgS~dgTI~Iwdl~ 410 (701)
-+.-.|+++.|.|. ..+|+++++||+|++|.+.
T Consensus 278 aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 278 AHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 12225999999994 7899999999999999874
No 75
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.53 E-value=6.3e-12 Score=142.80 Aligned_cols=120 Identities=22% Similarity=0.303 Sum_probs=89.5
Q ss_pred cCCCCeEEEEECCCCcEEEEe---ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCC------CCCCc------
Q 005349 297 ADNVGMVIVRDIVSKNVIAQF---RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL------GTSSA------ 361 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~---~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~------~~~s~------ 361 (701)
+...|.|.+|++++|-....| ++|..+|..|+.+--+++++||+.+|. ++.||...... +.+..
T Consensus 466 G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~hr 544 (910)
T KOG1539|consen 466 GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYHR 544 (910)
T ss_pred eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce-EEEEecCCcceeeeeccCCCcceeeeee
Confidence 456799999999999888888 599999999999999999999999996 89999876521 11100
Q ss_pred -cC-----CCCceeEEEEE--------eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 362 -CD-----AGTSYVHLYRL--------QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 362 -~~-----~~~~~~~l~~l--------~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
.+ -..-...++.. .+||. .+|++++|||||+||++++.|+||++||+-+....-.+
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~-nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTRKVVREFWGHG-NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhhhhhHHhhccc-cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 00 00001111221 25654 47999999999999999999999999999775444333
No 76
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.7e-13 Score=145.44 Aligned_cols=177 Identities=16% Similarity=0.261 Sum_probs=128.0
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEEEEec---CCEEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCccccee
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 193 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~sV~~s---~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~pi 193 (701)
+-|.|-..+|++.+.+++..+.|.++.|+ +++++++.+++|++||+++..+++....-....+ ..+
T Consensus 325 G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~g-----------ts~ 393 (514)
T KOG2055|consen 325 GHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHG-----------TSL 393 (514)
T ss_pred ceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccce-----------eee
Confidence 56899999999999999999999999995 4677778899999999999988888765321111 112
Q ss_pred e--eccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccC
Q 005349 194 A--VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (701)
Q Consensus 194 A--ls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p 271 (701)
+ +.++|||
T Consensus 394 ~~S~ng~ylA---------------------------------------------------------------------- 403 (514)
T KOG2055|consen 394 CISLNGSYLA---------------------------------------------------------------------- 403 (514)
T ss_pred eecCCCceEE----------------------------------------------------------------------
Confidence 2 1122332
Q ss_pred CCCCccccccCCCCCCCcccccccccCCCCeEEEEECCC------CcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC-c
Q 005349 272 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS------KNVIAQFRAHKSPISALCFDPSGILLVTASVQG-H 344 (701)
Q Consensus 272 ~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s------~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG-t 344 (701)
++.+.|.|.|||..+ .+++..+..-+..|++|+|+||+++||.||... .
T Consensus 404 ------------------------~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kn 459 (514)
T KOG2055|consen 404 ------------------------TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKN 459 (514)
T ss_pred ------------------------eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcccc
Confidence 344567788888553 357777777788999999999999999998632 2
Q ss_pred EEEEEEcCCCCCCCCCccCCCCceeEEEEEe-ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 345 NINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 345 ~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~-rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
.+|+-.+..- .....+. ++..-..|+|++|||.|-+||.|..+|.+++|.|+.+
T Consensus 460 alrLVHvPS~--------------TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 460 ALRLVHVPSC--------------TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred ceEEEeccce--------------eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence 3777766542 0000110 1112234999999999999999999999999998743
No 77
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.6e-13 Score=137.89 Aligned_cols=175 Identities=14% Similarity=0.146 Sum_probs=128.1
Q ss_pred CCcEEEEEECCCCcEEEEEec-CCCEEEEEec---CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcc
Q 005349 115 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 189 (701)
Q Consensus 115 ~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s---~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~ 189 (701)
+++||||||..-.+-+.|++. .+.|+...|+ +++++. +.|+..++||++..-+...++.|...
T Consensus 125 WD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~E------------ 192 (311)
T KOG0277|consen 125 WDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSE------------ 192 (311)
T ss_pred cCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccce------------
Confidence 669999999999999999875 6799999998 467776 67899999998864333334433110
Q ss_pred cceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccc
Q 005349 190 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 269 (701)
Q Consensus 190 ~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~ 269 (701)
++.-.|--|-
T Consensus 193 ----il~cdw~ky~------------------------------------------------------------------ 202 (311)
T KOG0277|consen 193 ----ILCCDWSKYN------------------------------------------------------------------ 202 (311)
T ss_pred ----eEeecccccC------------------------------------------------------------------
Confidence 0000111110
Q ss_pred cCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC-cEEEEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEE
Q 005349 270 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNIN 347 (701)
Q Consensus 270 ~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~~H~~~Is~laFSPd-G~lLaTaS~dGt~I~ 347 (701)
...+++++.|+.|++||+++- .++..+.+|.-.|..|+|||. ..+|||||.|-+ +|
T Consensus 203 ---------------------~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~r 260 (311)
T KOG0277|consen 203 ---------------------HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VR 260 (311)
T ss_pred ---------------------CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EE
Confidence 002345677899999999984 578899999999999999995 679999999987 89
Q ss_pred EEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 005349 348 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 348 Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwd 408 (701)
|||..... +....++ ++..-+.++.||+ +..++|+.+-|+++.||+
T Consensus 261 iw~~~~~d-----------s~~e~~~----~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 261 IWDPERQD-----------SAIETVD----HHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ecccccch-----------hhhhhhh----ccceEEeccccccccCceeeecccccceeeec
Confidence 99987540 1111122 1223388899998 889999999999999997
No 78
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=4.1e-14 Score=156.66 Aligned_cols=189 Identities=15% Similarity=0.267 Sum_probs=143.7
Q ss_pred CcEEEEEECCCCc------EEEEEec-CCCEEEEEe--cC-CEEEEEeCCEEEEEECCCC--ceeEEEecCCCccCCCCC
Q 005349 116 PTVVHFYSLRSQS------YVHMLKF-RSPIYSVRC--SS-RVVAICQAAQVHCFDAATL--EIEYAILTNPIVMGHPSA 183 (701)
Q Consensus 116 ~~tVriWdl~tg~------~v~tL~f-~s~V~sV~~--s~-~~LaVa~~~~I~iwDl~t~--~~~~tl~t~~~~~~~~~~ 183 (701)
++.|++|+..... ++.+++. ...|.++.. ++ .++.++.|.+|++|++... -|..+|.+|.+..
T Consensus 46 Dg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYV----- 120 (735)
T KOG0308|consen 46 DGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYV----- 120 (735)
T ss_pred CceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchh-----
Confidence 3889999986543 4566654 457776665 45 4555678999999999876 4677777775421
Q ss_pred CCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecc
Q 005349 184 GGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 263 (701)
Q Consensus 184 ~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls 263 (701)
..|||....
T Consensus 121 --------------kcla~~ak~--------------------------------------------------------- 129 (735)
T KOG0308|consen 121 --------------KCLAYIAKN--------------------------------------------------------- 129 (735)
T ss_pred --------------eeeeecccC---------------------------------------------------------
Confidence 235563110
Q ss_pred cccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC--cE--------EEEee-cCCCCeEEEEEcCC
Q 005349 264 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NV--------IAQFR-AHKSPISALCFDPS 332 (701)
Q Consensus 264 ~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~--~~--------i~~~~-~H~~~Is~laFSPd 332 (701)
+-.+++++-|+.|.|||+.++ +. ...+. +|..+|.+++.++.
T Consensus 130 ---------------------------~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t 182 (735)
T KOG0308|consen 130 ---------------------------NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT 182 (735)
T ss_pred ---------------------------ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence 001234566889999999976 22 23333 88899999999999
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 333 G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
|++|++|+..+- |++||-++. ..+.+|+ ||+. .|.++-.++||+.+.++|+||||++||+...
T Consensus 183 ~t~ivsGgtek~-lr~wDprt~--------------~kimkLr-GHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 183 GTIIVSGGTEKD-LRLWDPRTC--------------KKIMKLR-GHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred ceEEEecCcccc-eEEeccccc--------------cceeeee-cccc-ceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence 999999999975 999999886 6778885 8764 5999999999999999999999999999999
Q ss_pred CCceeecCCCCC
Q 005349 413 GGSVNFQPTDAN 424 (701)
Q Consensus 413 g~~~~~~~H~~~ 424 (701)
.+..++..|...
T Consensus 246 rCl~T~~vH~e~ 257 (735)
T KOG0308|consen 246 RCLATYIVHKEG 257 (735)
T ss_pred ceeeeEEeccCc
Confidence 999999888643
No 79
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.51 E-value=3.8e-13 Score=134.96 Aligned_cols=218 Identities=15% Similarity=0.157 Sum_probs=140.6
Q ss_pred CCCCcEEEEEECCCCcEEEEEecCCCEEEEEec--CC-EEEEEeCCEEEEEECCCCce-eEEEecCCCccCCCCCCCCCc
Q 005349 113 SSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SR-VVAICQAAQVHCFDAATLEI-EYAILTNPIVMGHPSAGGIGI 188 (701)
Q Consensus 113 ~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~-~LaVa~~~~I~iwDl~t~~~-~~tl~t~~~~~~~~~~~~~~~ 188 (701)
+..+-+-++||.-||..+++++++.-|.+++|+ .+ +|..+.++-++|||+...+- ...+..|+. ++
T Consensus 77 aaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg----------~I 146 (334)
T KOG0278|consen 77 AAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG----------GI 146 (334)
T ss_pred hcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCC----------cc
Confidence 345678999999999999999999999999996 34 44447778899999886431 112222211 01
Q ss_pred ccceeeecc-ceEEEcCCC-ceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccc
Q 005349 189 GYGPLAVGP-RWLAYSGSP-VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 266 (701)
Q Consensus 189 ~~~piAls~-r~LAya~~~-~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~ 266 (701)
..--+..+. ..|..+... ++.| ...+.+.+- +|
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLW-----------------------------D~rTgt~v~------------sL---- 181 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLW-----------------------------DHRTGTEVQ------------SL---- 181 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEE-----------------------------EeccCcEEE------------EE----
Confidence 111111111 234334221 2222 111111100 00
Q ss_pred ccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005349 267 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNI 346 (701)
Q Consensus 267 ~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I 346 (701)
.++....+.... ..+.+++....+.|..||..+..+++.++... .|.+.+.+|+-..++.|..|+. +
T Consensus 182 --~~~s~VtSlEvs---------~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~-nV~SASL~P~k~~fVaGged~~-~ 248 (334)
T KOG0278|consen 182 --EFNSPVTSLEVS---------QDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC-NVESASLHPKKEFFVAGGEDFK-V 248 (334)
T ss_pred --ecCCCCcceeec---------cCCCEEEEecCceeEEeccccccceeeccCcc-ccccccccCCCceEEecCcceE-E
Confidence 000000111100 11244555566889999999999998887654 6889999999999999999997 8
Q ss_pred EEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 005349 347 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 347 ~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g 413 (701)
+.||..++ +.+-.+..|+. ..|.|+.|||||...|+||.||||+||...+..
T Consensus 249 ~kfDy~Tg--------------eEi~~~nkgh~-gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 249 YKFDYNTG--------------EEIGSYNKGHF-GPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEeccCC--------------ceeeecccCCC-CceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 99999988 33333346664 469999999999999999999999999997653
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.51 E-value=2e-12 Score=137.96 Aligned_cols=227 Identities=14% Similarity=0.220 Sum_probs=157.1
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
..+|.+|-+...-++|.+. +....++.+|.-.|..+.+-|.. .++..++
T Consensus 232 ~~ilTGG~d~~av~~d~~s-~q~l~~~~Gh~kki~~v~~~~~~----------------~~v~~aS-------------- 280 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPS-NQILATLKGHTKKITSVKFHKDL----------------DTVITAS-------------- 280 (506)
T ss_pred CcceecCCCCceEEEecch-hhhhhhccCcceEEEEEEeccch----------------hheeecC--------------
Confidence 5566666666888888876 44556666676666666654421 1122221
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEe--cCCEEEE-EeCCEEEEEECCCCceeEEEec
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRC--SSRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~--s~~~LaV-a~~~~I~iwDl~t~~~~~tl~t 173 (701)
.+..|++|+.-...+...+.. ..+|..+.. +++++.. +.++.+.+.|++++.++.....
T Consensus 281 -----------------ad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~ 343 (506)
T KOG0289|consen 281 -----------------ADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD 343 (506)
T ss_pred -----------------CcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee
Confidence 236799999988877666654 679998888 4677776 5567788889999887654432
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEE
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~ 253 (701)
-.+ . +.+...+ |
T Consensus 344 ~~s--~--------v~~ts~~-------f--------------------------------------------------- 355 (506)
T KOG0289|consen 344 ETS--D--------VEYTSAA-------F--------------------------------------------------- 355 (506)
T ss_pred ccc--c--------ceeEEee-------E---------------------------------------------------
Confidence 110 0 1111111 1
Q ss_pred cCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCC
Q 005349 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (701)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG 333 (701)
+||+ . .|..+..||.|+|||+.++..++.|.+|+++|.+|+|+-+|
T Consensus 356 ----------------HpDg---------------L---ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG 401 (506)
T KOG0289|consen 356 ----------------HPDG---------------L---IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG 401 (506)
T ss_pred ----------------cCCc---------------e---EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc
Confidence 1221 1 12345678999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 334 ~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
.+|||+.+|+. |++||++... ....+.+.. ...|.+++|.+.|++|++++.|=+|++++-.
T Consensus 402 Y~Lat~add~~-V~lwDLRKl~------------n~kt~~l~~---~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~ 462 (506)
T KOG0289|consen 402 YWLATAADDGS-VKLWDLRKLK------------NFKTIQLDE---KKEVNSLSFDQSGTYLGIAGSDLQVYICKKK 462 (506)
T ss_pred eEEEEEecCCe-EEEEEehhhc------------ccceeeccc---cccceeEEEcCCCCeEEeecceeEEEEEecc
Confidence 99999999987 9999998651 122233322 1248999999999999999888888887743
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.50 E-value=4.4e-13 Score=156.07 Aligned_cols=172 Identities=11% Similarity=0.131 Sum_probs=126.1
Q ss_pred CCCeEEEEECCC------------CcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCC--
Q 005349 299 NVGMVIVRDIVS------------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDA-- 364 (701)
Q Consensus 299 ~dG~V~IwDl~s------------~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~-- 364 (701)
.||.++||.... .+.+.++..|.+.|+|+.|+|||++||+||+|. .|-||+-.+. +.+..++.
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~-~v~iW~~~~~--~~~~~fgs~g 111 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR-LVMIWERAEI--GSGTVFGSTG 111 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc-eEEEeeeccc--CCcccccccc
Confidence 677888998653 246778889999999999999999999999996 5999998751 12222221
Q ss_pred ---CCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcccc-------------
Q 005349 365 ---GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTK------------- 428 (701)
Q Consensus 365 ---~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~~~~~------------- 428 (701)
....+..+...|||. ..|.+++||||+.+||++|.|++|+||+..+++....+++|++.+-..
T Consensus 112 ~~~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqs 190 (942)
T KOG0973|consen 112 GAKNVESWKVVSILRGHD-SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQS 190 (942)
T ss_pred cccccceeeEEEEEecCC-CccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeec
Confidence 111122233347764 579999999999999999999999999999997777888888653221
Q ss_pred -----------------------cCCCcccccccCCCCCCCCCCccccccCCCCeeeeEeEEEecCCCCCCccc
Q 005349 429 -----------------------HGAMAKSGVRWPPNLGLQMPNQQSLCASGPPVTLSVVSRIRNGNNGWRGTV 479 (701)
Q Consensus 429 -----------------------~~~~~~~~~~~~~~s~~~~~~q~~l~~~~~~~~~s~v~~i~~~~~~~~~~v 479 (701)
...+..+.+++..||+.. ++...|++-+.+.+.+++|.+++ |..++
T Consensus 191 dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG---~~las~nA~n~~~~~~~IieR~t--Wk~~~ 259 (942)
T KOG0973|consen 191 DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG---HHLASPNAVNGGKSTIAIIERGT--WKVDK 259 (942)
T ss_pred CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc---CeecchhhccCCcceeEEEecCC--ceeee
Confidence 123445566777777776 55555666677888999999965 86553
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.4e-11 Score=121.97 Aligned_cols=241 Identities=16% Similarity=0.175 Sum_probs=161.1
Q ss_pred CcEEEEeccC-CeEEEEecC--CCC--eeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCcccc
Q 005349 18 RRVLLLGYRS-GFQVWDVEE--ADN--VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (701)
Q Consensus 18 ~~vL~~g~~~-g~qVwdv~~--~~~--~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~ 92 (701)
..+++.|.+. .+++.-.+. .+. -..-++-|||.|+.+.|+-+|... ..+|+-.+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~----------~~il~s~ga---------- 160 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESG----------GAILASAGA---------- 160 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcC----------ceEEEecCC----------
Confidence 5666666644 466654432 111 122345689999999998665321 123432221
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEE-ecCCEEEE-EeCCEEEEEECCCCceeE
Q 005349 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVR-CSSRVVAI-CQAAQVHCFDAATLEIEY 169 (701)
Q Consensus 93 d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~-~s~~~LaV-a~~~~I~iwDl~t~~~~~ 169 (701)
-++.|.+-|-.+|+..+-+.. .+.|.++- +|+-+++. +.|.+|++||++-..++.
T Consensus 161 ----------------------gdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~ 218 (350)
T KOG0641|consen 161 ----------------------GDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVN 218 (350)
T ss_pred ----------------------CcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceee
Confidence 127889999999999998875 56787764 47777777 689999999999888888
Q ss_pred EEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhc
Q 005349 170 AILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (701)
Q Consensus 170 tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~ 249 (701)
++.+.-. + +| +...+++ |.+ .+.+
T Consensus 219 ~l~~~~~-----~-~g--lessava------av~-------------------------------------vdps----- 242 (350)
T KOG0641|consen 219 TLDNDFH-----D-GG--LESSAVA------AVA-------------------------------------VDPS----- 242 (350)
T ss_pred eccCccc-----C-CC--cccceeE------EEE-------------------------------------ECCC-----
Confidence 8754210 0 00 1001110 000 0000
Q ss_pred eeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEE
Q 005349 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (701)
Q Consensus 250 gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laF 329 (701)
| ..++++..|....+||++.++.++.|..|+..|.|+.|
T Consensus 243 --------------------------------------g---rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrf 281 (350)
T KOG0641|consen 243 --------------------------------------G---RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRF 281 (350)
T ss_pred --------------------------------------c---ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEe
Confidence 0 12334556778999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 330 DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 330 SPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
||...+|.|||.|.. |++-|+.-. ..+.|-.+--+.+..++..+.|.|..--+.+.|.|.|+.+|.+
T Consensus 282 sp~a~yllt~syd~~-ikltdlqgd------------la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 282 SPGAHYLLTCSYDMK-IKLTDLQGD------------LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred CCCceEEEEecccce-EEEeecccc------------hhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 999999999999976 999998643 1112211112333445666899999888999999999999988
Q ss_pred C
Q 005349 410 N 410 (701)
Q Consensus 410 ~ 410 (701)
+
T Consensus 349 ~ 349 (350)
T KOG0641|consen 349 N 349 (350)
T ss_pred C
Confidence 5
No 83
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.50 E-value=5e-14 Score=151.79 Aligned_cols=177 Identities=14% Similarity=0.245 Sum_probs=138.9
Q ss_pred CCcEEEEEECCC-CcEEEEEec-CCCEEEEEec---CCEEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcc
Q 005349 115 VPTVVHFYSLRS-QSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 189 (701)
Q Consensus 115 ~~~tVriWdl~t-g~~v~tL~f-~s~V~sV~~s---~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~ 189 (701)
+++.|+||++.. ++|++++.. ..+|.+++|| .++|.+++|+.|++||++|++++..+.+-..+
T Consensus 235 mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~------------ 302 (503)
T KOG0282|consen 235 MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVP------------ 302 (503)
T ss_pred CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCc------------
Confidence 458999999987 899999976 5699999997 47888999999999999999998887653110
Q ss_pred cceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccc
Q 005349 190 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 269 (701)
Q Consensus 190 ~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~ 269 (701)
||..+
T Consensus 303 ---------------------------------------------------------------------------~cvkf 307 (503)
T KOG0282|consen 303 ---------------------------------------------------------------------------TCVKF 307 (503)
T ss_pred ---------------------------------------------------------------------------eeeec
Confidence 01111
Q ss_pred cCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005349 270 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIF 349 (701)
Q Consensus 270 ~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iw 349 (701)
.|++ ...|..+..|+.|+.||+++++.++....|-+.|..+.|=++|+.++|+|+|++ ++||
T Consensus 308 ~pd~-----------------~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks-~riW 369 (503)
T KOG0282|consen 308 HPDN-----------------QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS-VRIW 369 (503)
T ss_pred CCCC-----------------CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc-EEEE
Confidence 1221 012345667899999999999999999999999999999999999999999986 9999
Q ss_pred EcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 350 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 350 dl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
+..... .+-+..+-.. ....+|..+|.++|++.=|.|+.|-||.+.+
T Consensus 370 e~~~~v-------------~ik~i~~~~~--hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 370 ENRIPV-------------PIKNIADPEM--HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred EcCCCc-------------cchhhcchhh--ccCcceecCCCCCeehhhccCceEEEEeccc
Confidence 988751 1112222222 2367899999999999999999999999764
No 84
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.50 E-value=1.9e-12 Score=139.02 Aligned_cols=112 Identities=16% Similarity=0.274 Sum_probs=85.6
Q ss_pred cccCCCCeEEEEECCCC-cEEEEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCC-CceeEE
Q 005349 295 PDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAG-TSYVHL 371 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~-~~i~~~~~H~~~Is~laFSPd-G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~-~~~~~l 371 (701)
++++.|++|.+||+++. +++.+|.+|...|.+|.|||. .+.|||++.|++ ++|||+..-. ...+..+.. +..+.+
T Consensus 289 AT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ig-~eq~~eda~dgppEll 366 (422)
T KOG0264|consen 289 ATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRIG-EEQSPEDAEDGPPELL 366 (422)
T ss_pred EeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccccc-cccChhhhccCCccee
Confidence 45677999999999984 578999999999999999995 789999999998 8999997541 111111111 112333
Q ss_pred EEEeccCCcccEEEEEEcCCCCE-EEEEeCCCcEEEEecC
Q 005349 372 YRLQRGLTNAVIQDISFSDDSNW-IMISSSRGTSHLFAIN 410 (701)
Q Consensus 372 ~~l~rG~~~a~I~~iaFSpDg~~-lAsgS~dgTI~Iwdl~ 410 (701)
=.++||+ +.|.+++|+|.-.| ||+.+.|+.++||...
T Consensus 367 -F~HgGH~-~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 367 -FIHGGHT-AKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred -EEecCcc-cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 3457775 57999999997776 6678999999999986
No 85
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=5.4e-14 Score=144.80 Aligned_cols=205 Identities=16% Similarity=0.213 Sum_probs=147.9
Q ss_pred CCCcEEEEEECCCCcEEEEEec---------CCCEEEEEecC--CEEEE-EeCCEEEEEECCCCceeEEEec-CCCccCC
Q 005349 114 SVPTVVHFYSLRSQSYVHMLKF---------RSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEIEYAILT-NPIVMGH 180 (701)
Q Consensus 114 ~~~~tVriWdl~tg~~v~tL~f---------~s~V~sV~~s~--~~LaV-a~~~~I~iwDl~t~~~~~tl~t-~~~~~~~ 180 (701)
+.++.|.+||..+|+..+.|++ ..+|.+|.|++ .+||. +.|++|+||.+.|+.|++.+.. |..
T Consensus 232 SvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk---- 307 (508)
T KOG0275|consen 232 SVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK---- 307 (508)
T ss_pred cccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhcc----
Confidence 3569999999999998887763 56899999985 67887 7899999999999999877752 211
Q ss_pred CCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccce
Q 005349 181 PSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYK 260 (701)
Q Consensus 181 ~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~ 260 (701)
++ .+ |.|+-
T Consensus 308 --------Gv--t~-----l~FSr-------------------------------------------------------- 316 (508)
T KOG0275|consen 308 --------GV--TC-----LSFSR-------------------------------------------------------- 316 (508)
T ss_pred --------Ce--eE-----EEEcc--------------------------------------------------------
Confidence 11 11 12220
Q ss_pred ecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEe
Q 005349 261 KLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS 340 (701)
Q Consensus 261 ~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS 340 (701)
| +.++.+++.|-+|+|.-+.+|++++.|++|++.|+...|.+||..+++||
T Consensus 317 -----------D------------------~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 317 -----------D------------------NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred -----------C------------------cchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence 0 11334456788999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEcCCCCC----CCCCccCC-------CCceeEEE-------------------EEeccC-CcccEEEEEEc
Q 005349 341 VQGHNINIFKIIPGIL----GTSSACDA-------GTSYVHLY-------------------RLQRGL-TNAVIQDISFS 389 (701)
Q Consensus 341 ~dGt~I~Iwdl~~~~~----~~~s~~~~-------~~~~~~l~-------------------~l~rG~-~~a~I~~iaFS 389 (701)
.||+ |+||+.++... ...+.+-. .....|.. .+..|. ......+++.|
T Consensus 368 sDgt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 368 SDGT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CCcc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEec
Confidence 9998 89999887521 11110000 00001111 111111 01235578899
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCceeecCCCC
Q 005349 390 DDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (701)
Q Consensus 390 pDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~ 423 (701)
|-|.|+...+.|+.+..|.+..++-+.++..|..
T Consensus 447 pkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk 480 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK 480 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecCceeeeeecccc
Confidence 9999999999999999999998887777776653
No 86
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.49 E-value=3.2e-12 Score=145.17 Aligned_cols=173 Identities=15% Similarity=0.269 Sum_probs=131.1
Q ss_pred CcEEEEEECCCCcEEEEE----ecCCCEEEEEec--CC-EEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCc
Q 005349 116 PTVVHFYSLRSQSYVHML----KFRSPIYSVRCS--SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 188 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~tL----~f~s~V~sV~~s--~~-~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~ 188 (701)
.++|-+|++++|-..+++ -+..+|.+|++. .+ +++.+.++-+.+||..+...+.++.-. ++
T Consensus 469 ~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-----~~------- 536 (910)
T KOG1539|consen 469 KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-----SS------- 536 (910)
T ss_pred CCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-----CC-------
Confidence 388999999999988888 357899999995 23 344478999999999987765555321 00
Q ss_pred ccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccc
Q 005349 189 GYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 268 (701)
Q Consensus 189 ~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~ 268 (701)
+ ..+.|. . .
T Consensus 537 ----~----~~iv~h----------------r-----------------------------------------~------ 545 (910)
T KOG1539|consen 537 ----I----TGIVYH----------------R-----------------------------------------V------ 545 (910)
T ss_pred ----c----ceeeee----------------e-----------------------------------------h------
Confidence 0 001111 0 0
Q ss_pred ccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005349 269 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINI 348 (701)
Q Consensus 269 ~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~I 348 (701)
++.++.+.+|-.|+|+|..+.+.++.|.+|+..|++++|||||+.|++|+.|++ ||+
T Consensus 546 ----------------------s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~ 602 (910)
T KOG1539|consen 546 ----------------------SDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRT 602 (910)
T ss_pred ----------------------hhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEE
Confidence 001222345668999999999999999999999999999999999999999998 999
Q ss_pred EEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCC-CcEEEEecCC
Q 005349 349 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINP 411 (701)
Q Consensus 349 wdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d-gTI~Iwdl~~ 411 (701)
||+.++ .++--+. ......++.|||.|.+||++..| .-|.+|.=..
T Consensus 603 wDlpt~--------------~lID~~~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 603 WDLPTG--------------TLIDGLL---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred EeccCc--------------ceeeeEe---cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 999987 4444442 23457899999999999999998 5699997543
No 87
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.48 E-value=3.6e-13 Score=145.89 Aligned_cols=114 Identities=16% Similarity=0.326 Sum_probs=87.7
Q ss_pred ccccccCCCCeEEEEECCCC-cEEEEee-----cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCC
Q 005349 292 GHFPDADNVGMVIVRDIVSK-NVIAQFR-----AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAG 365 (701)
Q Consensus 292 ~~~~~~~~dG~V~IwDl~s~-~~i~~~~-----~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~ 365 (701)
..|.++..||+++|||+..- +.+..|+ +-.-+++.++|+|||+++|+|..||. |.+|+....
T Consensus 282 ~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~----------- 349 (641)
T KOG0772|consen 282 EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSR----------- 349 (641)
T ss_pred cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCc-----------
Confidence 35778889999999999763 3333443 23358899999999999999999997 999997543
Q ss_pred CceeEEEEEeccCCcc-cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 366 TSYVHLYRLQRGLTNA-VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 366 ~~~~~l~~l~rG~~~a-~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
.++..+..+..|... .|.||+||+||++|++-+.|++++||||..+......
T Consensus 350 -~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 350 -TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred -ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhh
Confidence 123334444444432 4999999999999999999999999999988766543
No 88
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.48 E-value=5.3e-12 Score=141.95 Aligned_cols=233 Identities=13% Similarity=0.183 Sum_probs=152.6
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCccccee
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 193 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~pi 193 (701)
..++||+.+|++|++|+... -+.+..|- .+++++ .-.+++.+||+.....+-++..|.. ...++
T Consensus 394 ~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg------------aIWsi 460 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDG------------AIWSI 460 (888)
T ss_pred CcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccc------------ceeee
Confidence 56999999999999999876 45555552 455555 4578999999998877766665521 23456
Q ss_pred eecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhcee----EEcCCccceecccccc
Q 005349 194 AVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI----VNLGDLGYKKLSQYCS 267 (701)
Q Consensus 194 Als~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl----~~lGd~g~~~ls~y~~ 267 (701)
+++| +..+.++ .+.+|.-|....... .-|- ..+-+.. +|
T Consensus 461 ~~~pD~~g~vT~s---------------------------aDktVkfWdf~l~~~-~~gt~~k~lsl~~~r--tL----- 505 (888)
T KOG0306|consen 461 SLSPDNKGFVTGS---------------------------ADKTVKFWDFKLVVS-VPGTQKKVLSLKHTR--TL----- 505 (888)
T ss_pred eecCCCCceEEec---------------------------CCcEEEEEeEEEEec-cCcccceeeeeccce--EE-----
Confidence 6655 2222221 122222221111000 0000 0000000 00
Q ss_pred cccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005349 268 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNIN 347 (701)
Q Consensus 268 ~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~ 347 (701)
-+++.--. ..++|+.+ .++.+--|.+|+||-+++.+..-.+.+|.-||.||..|||+++|+|||.|.+ |+
T Consensus 506 -el~ddvL~-v~~Spdgk-------~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-VK 575 (888)
T KOG0306|consen 506 -ELEDDVLC-VSVSPDGK-------LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VK 575 (888)
T ss_pred -eccccEEE-EEEcCCCc-------EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-eE
Confidence 01111000 01122211 2334456789999999999998999999999999999999999999999976 99
Q ss_pred EEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCC
Q 005349 348 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (701)
Q Consensus 348 Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~ 423 (701)
||-+.-| .|-..+. +|. ..|.++.|-|+...+.+++.|+.|+-||-.++.....+.+|..
T Consensus 576 iWGLdFG--------------DCHKS~f-AHd-DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ 635 (888)
T KOG0306|consen 576 IWGLDFG--------------DCHKSFF-AHD-DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS 635 (888)
T ss_pred Eeccccc--------------hhhhhhh-ccc-CceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchh
Confidence 9999877 3323332 332 2399999999999999999999999999999999999998864
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.48 E-value=2e-12 Score=143.56 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=92.9
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
++.++..+.+++||-++++.+..+++|+..|.+|-.++||+.++|||.||+ ||+||+... +|+.+
T Consensus 186 ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQ--------------rCl~T 250 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQ--------------RCLAT 250 (735)
T ss_pred EEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeecccc--------------ceeee
Confidence 345667889999999999999999999999999999999999999999998 999999754 78877
Q ss_pred EeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 374 l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
+. -|.. .|+.+.-+|+=+.+.+|+.||.|..=|+..+.....+
T Consensus 251 ~~-vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli 293 (735)
T KOG0308|consen 251 YI-VHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI 293 (735)
T ss_pred EE-eccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe
Confidence 64 3332 3999999999999999999999999999886444433
No 90
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.48 E-value=9.1e-13 Score=142.85 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=84.1
Q ss_pred ccccCCCCeEEEEECCCCc--EE-EEeecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCce
Q 005349 294 FPDADNVGMVIVRDIVSKN--VI-AQFRAHKS--PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 368 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~--~i-~~~~~H~~--~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~ 368 (701)
++.+..||.|.+||..+.. +. ..-++|.. .|+||+||+||++|+|-+.|++ +++||++.. .
T Consensus 332 iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~-------------k 397 (641)
T KOG0772|consen 332 IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQF-------------K 397 (641)
T ss_pred hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeecccc-------------c
Confidence 4456678999999986542 33 33349987 9999999999999999999998 899999875 1
Q ss_pred eEEEEEeccCC-cccEEEEEEcCCCCEEEEEeC------CCcEEEEecCCCCCceeec
Q 005349 369 VHLYRLQRGLT-NAVIQDISFSDDSNWIMISSS------RGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 369 ~~l~~l~rG~~-~a~I~~iaFSpDg~~lAsgS~------dgTI~Iwdl~~~g~~~~~~ 419 (701)
++|... .|.. ...-.++|||||.+.|.+|++ -|++.+||-.++.....+.
T Consensus 398 kpL~~~-tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 398 KPLNVR-TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred cchhhh-cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence 344433 2322 223678999999999999987 4678999988877666654
No 91
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.47 E-value=6.7e-13 Score=136.47 Aligned_cols=105 Identities=16% Similarity=0.261 Sum_probs=91.4
Q ss_pred CeEEEEECCCCcEEEEe---ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 301 GMVIVRDIVSKNVIAQF---RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~---~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
-++++||+.+.++...- ..|++.|+++.+|+.|++.+|||.||. |+|||--.+ +|+.++.+.
T Consensus 238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~--------------rCv~t~~~A 302 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSN--------------RCVRTIGNA 302 (430)
T ss_pred CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeeccccH--------------HHHHHHHhh
Confidence 47999999988765433 379999999999999999999999998 999997765 788888888
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecC
Q 005349 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (701)
Q Consensus 378 ~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~ 420 (701)
|..+.|.+..|+.+|+||.+++.|.++++|.|.+........+
T Consensus 303 H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 303 HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence 8888899999999999999999999999999998766665543
No 92
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=7.7e-13 Score=140.26 Aligned_cols=224 Identities=15% Similarity=0.254 Sum_probs=155.2
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeee-ccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSR-YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~-~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
|.+|+.|++.-+.+||+++ |+.+.+... +.-.|.++...|++ |. ++.+++
T Consensus 282 ryLlaCg~~e~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pDg---------~~-------~V~Gs~------------ 332 (519)
T KOG0293|consen 282 RYLLACGFDEVLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPDG---------FR-------FVTGSP------------ 332 (519)
T ss_pred CeEEecCchHheeeccCCc-chhhhhcccCcCCCcceeEEccCC---------ce-------eEecCC------------
Confidence 8888889999999999997 666666653 34567777777643 21 233322
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec--CCCEEEEEec--C-CEEEEEeCCEEEEEECCCCceeEEE
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF--RSPIYSVRCS--S-RVVAICQAAQVHCFDAATLEIEYAI 171 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f--~s~V~sV~~s--~-~~LaVa~~~~I~iwDl~t~~~~~tl 171 (701)
++++.-||+.... +...+. .-.|+++++. + .+++|..|.+|++|+..+..+...+
T Consensus 333 -------------------dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li 392 (519)
T KOG0293|consen 333 -------------------DRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI 392 (519)
T ss_pred -------------------CCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc
Confidence 2778999986543 333333 2368888885 3 4667788999999999876554333
Q ss_pred ecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhcee
Q 005349 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (701)
Q Consensus 172 ~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl 251 (701)
.+.. + +..+.+| .+|..+
T Consensus 393 se~~---~----------its~~iS----------------------------------~d~k~~--------------- 410 (519)
T KOG0293|consen 393 SEEQ---P----------ITSFSIS----------------------------------KDGKLA--------------- 410 (519)
T ss_pred cccC---c----------eeEEEEc----------------------------------CCCcEE---------------
Confidence 2221 0 0011110 001100
Q ss_pred EEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCC--CeEEEEE
Q 005349 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKS--PISALCF 329 (701)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~--~Is~laF 329 (701)
...-.+..|++||++..+.+..+.+|+. -|-.-||
T Consensus 411 -------------------------------------------LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 411 -------------------------------------------LVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred -------------------------------------------EEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 0112345799999999999999999974 4556678
Q ss_pred cC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 005349 330 DP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLF 407 (701)
Q Consensus 330 SP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iw 407 (701)
-- +.+++|+||+|+. |+||+...+ ..+..| .||.. .|.|++|+| |-..+|++|+||||+||
T Consensus 448 gg~~~~fiaSGSED~k-vyIWhr~sg--------------kll~~L-sGHs~-~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSK-VYIWHRISG--------------KLLAVL-SGHSK-TVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred CCCCcceEEecCCCce-EEEEEccCC--------------ceeEee-cCCcc-eeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 76 5689999999987 999999887 566666 57653 499999999 77889999999999999
Q ss_pred ecCCC
Q 005349 408 AINPL 412 (701)
Q Consensus 408 dl~~~ 412 (701)
...+.
T Consensus 511 g~~~~ 515 (519)
T KOG0293|consen 511 GPSDN 515 (519)
T ss_pred cCCcc
Confidence 98765
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.47 E-value=1.4e-11 Score=124.47 Aligned_cols=163 Identities=14% Similarity=0.235 Sum_probs=128.6
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEE-EEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCccccee
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVA-ICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 193 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~La-Va~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~pi 193 (701)
..|-+.|.++.+.+++.+|+-.+..+.++ .+++. ...-++|.|.....++.+++|..||. |++
T Consensus 128 D~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s--------------nCi 193 (313)
T KOG1407|consen 128 DRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS--------------NCI 193 (313)
T ss_pred ccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCc--------------ceE
Confidence 56889999999999999999999999985 34443 35558999999999999999988852 223
Q ss_pred eeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCCC
Q 005349 194 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 273 (701)
Q Consensus 194 Als~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~ 273 (701)
++ .+. |.
T Consensus 194 cI-----~f~-------------p~------------------------------------------------------- 200 (313)
T KOG1407|consen 194 CI-----EFD-------------PD------------------------------------------------------- 200 (313)
T ss_pred EE-----EEC-------------CC-------------------------------------------------------
Confidence 32 221 00
Q ss_pred CCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCC
Q 005349 274 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 353 (701)
Q Consensus 274 ~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~ 353 (701)
+..|+.+..|..|.+||+...-+++.|..|.-||..|+||.||+|||+||+| +.|-|=++.+
T Consensus 201 -----------------GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED-h~IDIA~vet 262 (313)
T KOG1407|consen 201 -----------------GRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED-HFIDIAEVET 262 (313)
T ss_pred -----------------CceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc-ceEEeEeccc
Confidence 0123345567789999999999999999999999999999999999999999 5589988888
Q ss_pred CCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCC
Q 005349 354 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 354 ~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d 401 (701)
| ..++++. +.+.-..++|.|...+||-+.+|
T Consensus 263 G--------------d~~~eI~---~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 263 G--------------DRVWEIP---CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred C--------------CeEEEee---ccCCceeEEecCCCceeeEEecC
Confidence 8 5666664 33457899999999999988775
No 94
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.46 E-value=9.2e-12 Score=126.20 Aligned_cols=188 Identities=16% Similarity=0.205 Sum_probs=137.1
Q ss_pred cEEEEEECCCCcEEEEEec-CCCEEEEEec--CC-EEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SR-VVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~-~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
.++.+|=-..|+.+.++.. .+.|+++..+ .+ ++..+.|.++++||..+++++.++.+...+..+ -
T Consensus 32 ~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~-----------~ 100 (327)
T KOG0643|consen 32 STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRV-----------D 100 (327)
T ss_pred CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEE-----------e
Confidence 5577888889999999985 6799998885 34 444478999999999999999998763211000 0
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
+..+...+.+..++
T Consensus 101 F~~~gn~~l~~tD~------------------------------------------------------------------ 114 (327)
T KOG0643|consen 101 FSFGGNLILASTDK------------------------------------------------------------------ 114 (327)
T ss_pred eccCCcEEEEEehh------------------------------------------------------------------
Confidence 11111111111000
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECC-------CCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-------SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHN 345 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~-------s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~ 345 (701)
.-...+.|.++|++ +..++..+..+.+.|+.+-|+|-|+.|++|..||.
T Consensus 115 -----------------------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~- 170 (327)
T KOG0643|consen 115 -----------------------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS- 170 (327)
T ss_pred -----------------------hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc-
Confidence 01133567777776 56678888889999999999999999999999997
Q ss_pred EEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecC
Q 005349 346 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (701)
Q Consensus 346 I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~ 420 (701)
|++||+.++ ..+.+-.+- +...|.+|+||+|..+++++|.|.|-++||..+...+-++.+
T Consensus 171 is~~da~~g--------------~~~v~s~~~-h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 171 ISIYDARTG--------------KELVDSDEE-HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred EEEEEcccC--------------ceeeechhh-hccccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence 999999987 333332232 334699999999999999999999999999998877767665
No 95
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=6.1e-13 Score=149.94 Aligned_cols=117 Identities=15% Similarity=0.252 Sum_probs=91.0
Q ss_pred ccccCCCCeEEEEECCC-CcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 294 FPDADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s-~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
|+++.+.|.+++||++. .++..+|.||.++|.|+.|+|++.+||||+.|+. |+|||...+ ....++
T Consensus 192 F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~------------~~~~~~ 258 (839)
T KOG0269|consen 192 FASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDS------------RAKPKH 258 (839)
T ss_pred EEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCC------------Ccccee
Confidence 44566779999999986 4677888999999999999999999999999987 999998754 123344
Q ss_pred EEeccCCcccEEEEEEcCCCCE-EEEEeC--CCcEEEEecCCCCCc-eeecCCCCCcc
Q 005349 373 RLQRGLTNAVIQDISFSDDSNW-IMISSS--RGTSHLFAINPLGGS-VNFQPTDANFT 426 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSpDg~~-lAsgS~--dgTI~Iwdl~~~g~~-~~~~~H~~~~~ 426 (701)
+++ +.+.|.++.|-|+-++ ||+++. |-.|||||+...--+ .+|..|.+.+.
T Consensus 259 tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt 313 (839)
T KOG0269|consen 259 TIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT 313 (839)
T ss_pred EEe---ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccc
Confidence 553 4467999999997655 666665 778999999754333 47788876655
No 96
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.44 E-value=2.1e-12 Score=144.01 Aligned_cols=214 Identities=17% Similarity=0.346 Sum_probs=145.6
Q ss_pred cEEEEEECCCCcEEEEEec-CCCEEEEEec-----CCEEEEE-eCCEEEEEECC-CCceeEEEecCCCccCCCCCCCCCc
Q 005349 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS-----SRVVAIC-QAAQVHCFDAA-TLEIEYAILTNPIVMGHPSAGGIGI 188 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f-~s~V~sV~~s-----~~~LaVa-~~~~I~iwDl~-t~~~~~tl~t~~~~~~~~~~~~~~~ 188 (701)
+++|+|||..-++..+++- .+.|.++.++ .++||.+ -|+-|+|||+. .+..+++|.+|+..... +
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs-------v 553 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS-------V 553 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE-------E
Confidence 7899999999888888874 7899999997 3678874 57889999986 56677888887531110 1
Q ss_pred ccceeeecc---ceEEEcCCCcee------cCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccc
Q 005349 189 GYGPLAVGP---RWLAYSGSPVVV------SNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGY 259 (701)
Q Consensus 189 ~~~piAls~---r~LAya~~~~~~------s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~ 259 (701)
-||-+. +.|....++.+. +..|++.|.+ ..++ .| .++-|+.
T Consensus 554 ---KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~-------------t~t~-------~k------tTlYDm~- 603 (1080)
T KOG1408|consen 554 ---KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH-------------TQTL-------SK------TTLYDMA- 603 (1080)
T ss_pred ---EEeecCCceEEEeccCchhhheehhccccCceecccc-------------cccc-------cc------ceEEEee-
Confidence 011111 222222221110 0112211110 0000 00 0000100
Q ss_pred eecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEee---cCCCCeEEEEEcCCCCEE
Q 005349 260 KKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR---AHKSPISALCFDPSGILL 336 (701)
Q Consensus 260 ~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~---~H~~~Is~laFSPdG~lL 336 (701)
+.|.+ ++.+++.+|..|+|||+.+++.++.|+ .|.+..-.|..+|+|-||
T Consensus 604 --------------------Vdp~~-------k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~ 656 (1080)
T KOG1408|consen 604 --------------------VDPTS-------KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYL 656 (1080)
T ss_pred --------------------eCCCc-------ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEE
Confidence 11111 255677899999999999999999998 566788899999999999
Q ss_pred EEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 337 VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 337 aTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
||...|.+ +-+||..++ +|+.++. ||.. .|+.+.|++|.++|++.+.||.|.||.+..
T Consensus 657 atScsdkt-l~~~Df~sg--------------EcvA~m~-GHsE-~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 657 ATSCSDKT-LCFVDFVSG--------------ECVAQMT-GHSE-AVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEeecCCc-eEEEEeccc--------------hhhhhhc-Ccch-heeeeeecccchhheeecCCceEEEEECch
Confidence 99999977 899999887 6766663 6543 499999999999999999999999999854
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.43 E-value=4.9e-11 Score=124.04 Aligned_cols=176 Identities=14% Similarity=0.178 Sum_probs=123.1
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEEEEec--CCEE-EE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVV-AI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~L-aV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
++|++||+.++++++++.....+..+.++ ++.+ ++ ..++.|++||+.+++....+.....
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---------------- 74 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD---------------- 74 (300)
T ss_pred CEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC----------------
Confidence 78999999999999999876667788886 4455 44 3568999999999876655432210
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
+..+++.. + +..
T Consensus 75 ----~~~~~~~~-------------~--------------g~~------------------------------------- 86 (300)
T TIGR03866 75 ----PELFALHP-------------N--------------GKI------------------------------------- 86 (300)
T ss_pred ----ccEEEECC-------------C--------------CCE-------------------------------------
Confidence 01223321 0 000
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~ 352 (701)
.++....++.|++||+.+++.+..++.+ ..+.+++|+|||.+|++++.++..+.+||..
T Consensus 87 --------------------l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 87 --------------------LYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred --------------------EEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCC
Confidence 0111234679999999998888888744 3468899999999999999887667888987
Q ss_pred CCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCC
Q 005349 353 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 414 (701)
Q Consensus 353 ~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~~g~ 414 (701)
++ ..+..+..+ ..+..++|+|||++|++++ .+++|++||+.+...
T Consensus 146 ~~--------------~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 146 TY--------------EIVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred CC--------------eEEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 65 333333222 2357799999999986554 599999999986543
No 98
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.42 E-value=9.1e-12 Score=127.55 Aligned_cols=111 Identities=16% Similarity=0.234 Sum_probs=83.1
Q ss_pred CCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEEcCCCCCCCCCc-cCCCCceeEEEEEe
Q 005349 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSA-CDAGTSYVHLYRLQ 375 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~-lLaTaS~dGt~I~Iwdl~~~~~~~~s~-~~~~~~~~~l~~l~ 375 (701)
..+-.|++.|+.+|..-..+.+|...|.++.|+|... .|||||.||+ ||+||++.. .|.-.. +...+ +....++
T Consensus 165 tr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRra-sgcf~~lD~hn~--k~~p~~~ 240 (397)
T KOG4283|consen 165 TRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRA-SGCFRVLDQHNT--KRPPILK 240 (397)
T ss_pred cCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeecc-cceeEEeecccC--ccCcccc
Confidence 3456799999999999999999999999999999755 6999999998 999999864 110000 00000 0111111
Q ss_pred -ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 376 -RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 376 -rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
+-.+..+|..+||+.||.++++.+.|..+++|+...+
T Consensus 241 ~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 241 TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred ccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 2223456999999999999999999999999998764
No 99
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=1.7e-11 Score=126.65 Aligned_cols=94 Identities=20% Similarity=0.277 Sum_probs=64.9
Q ss_pred EEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCC----------CCCCc-------------------cC
Q 005349 313 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL----------GTSSA-------------------CD 363 (701)
Q Consensus 313 ~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~----------~~~s~-------------------~~ 363 (701)
.+.+|++|.+.|.++||||+.+.++|+|.||+ +||||+.-.+. ++... ..
T Consensus 270 rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~ 348 (420)
T KOG2096|consen 270 RVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV 348 (420)
T ss_pred hhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe
Confidence 45678899999999999999999999999998 89999764311 11000 00
Q ss_pred CCCceeEEEEEeccC--------CcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005349 364 AGTSYVHLYRLQRGL--------TNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 364 ~~~~~~~l~~l~rG~--------~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwd 408 (701)
+.++--+++.-++|. +...|.+|+|++||+++|++++ +-++|+.
T Consensus 349 s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r~vrv~~ 400 (420)
T KOG2096|consen 349 SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD-RYVRVIR 400 (420)
T ss_pred ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc-eeeeeec
Confidence 112223344434442 2335999999999999999874 4677765
No 100
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=7.9e-11 Score=121.99 Aligned_cols=221 Identities=14% Similarity=0.278 Sum_probs=146.2
Q ss_pred cCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCC
Q 005349 26 RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSAN 105 (701)
Q Consensus 26 ~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~ 105 (701)
++.++..++.+ +...+.+.+|...|..+.+.|. +|.| .+.
T Consensus 79 d~tIryLsl~d-NkylRYF~GH~~~V~sL~~sP~-------~d~F---------lS~----------------------- 118 (311)
T KOG1446|consen 79 DDTIRYLSLHD-NKYLRYFPGHKKRVNSLSVSPK-------DDTF---------LSS----------------------- 118 (311)
T ss_pred CCceEEEEeec-CceEEEcCCCCceEEEEEecCC-------CCeE---------Eec-----------------------
Confidence 45788888887 4577777888888888888873 2333 121
Q ss_pred CCCCCCCCCCCcEEEEEECCCCcEEEEEecCC-CEEEEEecCCEEEEEeCC-EEEEEECCCCcee-EEEecCCCccCCCC
Q 005349 106 YHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS-PIYSVRCSSRVVAICQAA-QVHCFDAATLEIE-YAILTNPIVMGHPS 182 (701)
Q Consensus 106 ~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s-~V~sV~~s~~~LaVa~~~-~I~iwDl~t~~~~-~tl~t~~~~~~~~~ 182 (701)
+.+++||+||+|+.+|..-+.... +|.+..-.+-++|++..+ .|++||++.+..- ++.-.... ++
T Consensus 119 --------S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~----~~ 186 (311)
T KOG1446|consen 119 --------SLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD----ND 186 (311)
T ss_pred --------ccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC----CC
Confidence 134899999999999999888754 554444456677776555 9999999986421 11100000 00
Q ss_pred CCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceec
Q 005349 183 AGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKL 262 (701)
Q Consensus 183 ~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~l 262 (701)
...|+-| -|+ | +|+.
T Consensus 187 ----~~ew~~l-------~FS-------------~--------------dGK~--------------------------- 201 (311)
T KOG1446|consen 187 ----EAEWTDL-------EFS-------------P--------------DGKS--------------------------- 201 (311)
T ss_pred ----ccceeee-------EEc-------------C--------------CCCE---------------------------
Confidence 0001111 111 0 1111
Q ss_pred ccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCe---EEEEEcCCCCEEEEE
Q 005349 263 SQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPI---SALCFDPSGILLVTA 339 (701)
Q Consensus 263 s~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~I---s~laFSPdG~lLaTa 339 (701)
+.-+...+.+.+.|.-+|..+..|..|...= ...+|+|||++++++
T Consensus 202 -------------------------------iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g 250 (311)
T KOG1446|consen 202 -------------------------------ILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSG 250 (311)
T ss_pred -------------------------------EEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEe
Confidence 1112345789999999999999998776432 456899999999999
Q ss_pred eCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 340 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 340 S~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
+.||+ |++|++.++ .+...+ +|.....+.++.|+|.--.++++ +..+-+|-.+..
T Consensus 251 s~dg~-i~vw~~~tg--------------~~v~~~-~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 251 SDDGT-IHVWNLETG--------------KKVAVL-RGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDED 305 (311)
T ss_pred cCCCc-EEEEEcCCC--------------cEeeEe-cCCCCCCccccccCCceeeeeec--CceEEEEecccc
Confidence 99998 899999887 566666 45444568999999976666655 456778866543
No 101
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.40 E-value=1.5e-11 Score=140.44 Aligned_cols=180 Identities=18% Similarity=0.214 Sum_probs=124.1
Q ss_pred CCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEecC---CEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCC
Q 005349 111 NGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGI 186 (701)
Q Consensus 111 ~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s~---~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~ 186 (701)
-.+++++|||||++...+|++++.++.-|.+|+|++ ++++. ++|++|+||++..-+...--.... +
T Consensus 384 LSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~----l------ 453 (712)
T KOG0283|consen 384 LSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD----L------ 453 (712)
T ss_pred EeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhh----h------
Confidence 345689999999999999999999999999999984 55555 899999999998755332211110 0
Q ss_pred CcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccc
Q 005349 187 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 266 (701)
Q Consensus 187 ~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~ 266 (701)
+.+ +.|.
T Consensus 454 ---ITA-------vcy~--------------------------------------------------------------- 460 (712)
T KOG0283|consen 454 ---ITA-------VCYS--------------------------------------------------------------- 460 (712)
T ss_pred ---hee-------EEec---------------------------------------------------------------
Confidence 000 1121
Q ss_pred ccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEee---------cCCCCeEEEEEcCCCC--E
Q 005349 267 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR---------AHKSPISALCFDPSGI--L 335 (701)
Q Consensus 267 ~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~---------~H~~~Is~laFSPdG~--l 335 (701)
|+|.+. +.+..+|.+++|+....+....+. .|. .|+.+.|.|.-. +
T Consensus 461 ----PdGk~a------------------vIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~v 517 (712)
T KOG0283|consen 461 ----PDGKGA------------------VIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEV 517 (712)
T ss_pred ----cCCceE------------------EEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeE
Confidence 222111 113456889999988877665554 233 799999998433 5
Q ss_pred EEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCccc-EEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 005349 336 LVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 336 LaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~-I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g 413 (701)
|+| |.|-+ |||||+.+. ..+.+| +|..+.. =...+|+.||++|+++|+|.-|+||++....
T Consensus 518 LVT-SnDSr-IRI~d~~~~--------------~lv~Kf-KG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 518 LVT-SNDSR-IRIYDGRDK--------------DLVHKF-KGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred EEe-cCCCc-eEEEeccch--------------hhhhhh-cccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 555 66766 999999654 233344 3443332 3468899999999999999999999996543
No 102
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=5e-11 Score=136.91 Aligned_cols=177 Identities=17% Similarity=0.289 Sum_probs=127.0
Q ss_pred CcEEEEEECCCCcEEEEE-ecCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccc
Q 005349 116 PTVVHFYSLRSQSYVHML-KFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 191 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~tL-~f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~ 191 (701)
+++|+.|...+++.=.-| +|.-+++.++++ ++++|. +.|..|+|-++.+....+.+..|.-
T Consensus 75 ~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a--------------- 139 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA--------------- 139 (933)
T ss_pred cceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC---------------
Confidence 388999998887643222 455566666665 668887 4567899999998888888877632
Q ss_pred eeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccC
Q 005349 192 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (701)
Q Consensus 192 piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p 271 (701)
|+. .|-|.+ + +.
T Consensus 140 pVl----~l~~~p-------------~--------------~~------------------------------------- 151 (933)
T KOG1274|consen 140 PVL----QLSYDP-------------K--------------GN------------------------------------- 151 (933)
T ss_pred cee----eeeEcC-------------C--------------CC-------------------------------------
Confidence 110 122221 0 00
Q ss_pred CCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeec-------C-CCCeEEEEEcCCCCEEEEEeCCC
Q 005349 272 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA-------H-KSPISALCFDPSGILLVTASVQG 343 (701)
Q Consensus 272 ~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~-------H-~~~Is~laFSPdG~lLaTaS~dG 343 (701)
-++....||.|+|||+.++.+...+.. - ...++.++|+|+|..||....|+
T Consensus 152 ---------------------fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~ 210 (933)
T KOG1274|consen 152 ---------------------FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN 210 (933)
T ss_pred ---------------------EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC
Confidence 112234689999999999876655542 1 35677899999966666667776
Q ss_pred cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 344 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 344 t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
. |++|+...+ .++++|+-.+....+.+++|||.|+|||+++.||-|-|||..+
T Consensus 211 ~-Vkvy~r~~w--------------e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 211 T-VKVYSRKGW--------------ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred e-EEEEccCCc--------------eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 6 999999877 6778886555555599999999999999999999999999984
No 103
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=5e-13 Score=149.59 Aligned_cols=164 Identities=15% Similarity=0.208 Sum_probs=126.7
Q ss_pred cEEEEEECCCCcEEEEEec-CCCEEEEEecC--CEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~--~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
++||||||+.++.+++|.. ...+.+|.|++ .+.|. +.|..+.+||.+..-|.++...|+. .+
T Consensus 92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~------------vv-- 157 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR------------VV-- 157 (825)
T ss_pred CceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc------------ee--
Confidence 7899999999999999975 67899999984 66665 6789999999998778777765531 11
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
+.|++. |+ |..
T Consensus 158 -----~~l~ls-------------P~--------------Gr~------------------------------------- 168 (825)
T KOG0267|consen 158 -----DVLRLS-------------PD--------------GRW------------------------------------- 168 (825)
T ss_pred -----EEEeec-------------CC--------------Cce-------------------------------------
Confidence 223332 11 111
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~ 352 (701)
.+++..|..|+|||+..|+.+..|+.|...|.++.|+|..-+|++||.|++ +++||+.
T Consensus 169 ---------------------v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dle 226 (825)
T KOG0267|consen 169 ---------------------VASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLE 226 (825)
T ss_pred ---------------------eeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccc
Confidence 112345789999999999999999999999999999999999999999987 8999998
Q ss_pred CCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCC
Q 005349 353 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 353 ~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d 401 (701)
+. ..+-.. +.....|.+.+|+||++.+++|...
T Consensus 227 tf--------------e~I~s~--~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 227 TF--------------EVISSG--KPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ee--------------EEeecc--CCccCCceeeeecCCceeeecCchh
Confidence 75 333222 1123459999999999999888654
No 104
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=9.7e-12 Score=138.39 Aligned_cols=180 Identities=14% Similarity=0.245 Sum_probs=135.7
Q ss_pred cEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEec-CCCccCCCCCCCCCcccc
Q 005349 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT-NPIVMGHPSAGGIGIGYG 191 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t-~~~~~~~~~~~~~~~~~~ 191 (701)
..|.+|+-.+++......| ...|.+|.++ +..||| ..++.|.|||..+.+...++.. |.. -++
T Consensus 197 ~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~------------rvg 264 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHAS------------RVG 264 (484)
T ss_pred ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCc------------eeE
Confidence 6799999999997777777 7899999997 789998 6789999999999887777655 210 011
Q ss_pred eeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccC
Q 005349 192 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (701)
Q Consensus 192 piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p 271 (701)
.++ ...
T Consensus 265 ~la-------W~~------------------------------------------------------------------- 270 (484)
T KOG0305|consen 265 SLA-------WNS------------------------------------------------------------------- 270 (484)
T ss_pred EEe-------ccC-------------------------------------------------------------------
Confidence 111 100
Q ss_pred CCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEE-eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 005349 272 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFK 350 (701)
Q Consensus 272 ~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~-~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwd 350 (701)
..+..+..+|.|.++|+...+.+.. +++|...|..|+|++||.+||+++.|+. +.|||
T Consensus 271 --------------------~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~-~~Iwd 329 (484)
T KOG0305|consen 271 --------------------SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNV-VFIWD 329 (484)
T ss_pred --------------------ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccc-eEecc
Confidence 0112345689999999998766555 8899999999999999999999999986 89999
Q ss_pred cCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC-CCCEEEEE--eCCCcEEEEecCCCCCceeec
Q 005349 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMIS--SSRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 351 l~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp-Dg~~lAsg--S~dgTI~Iwdl~~~g~~~~~~ 419 (701)
.... ..++++. .| .+.|..++|+| ....||+| +.|++||+|+.......-.+.
T Consensus 330 ~~~~--------------~p~~~~~-~H-~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd 385 (484)
T KOG0305|consen 330 GLSP--------------EPKFTFT-EH-TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD 385 (484)
T ss_pred CCCc--------------cccEEEe-cc-ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc
Confidence 8443 3334442 33 35699999999 77899985 459999999998654443443
No 105
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.38 E-value=5.8e-12 Score=136.06 Aligned_cols=188 Identities=23% Similarity=0.352 Sum_probs=137.1
Q ss_pred cEEEEEECCCCcEEEEEe-cCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~-f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
++|+||||+...+.+.|+ +.+.|..|.+| ..+||. ...+.|.|-.+.|...-.++. +++ +
T Consensus 101 ~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~-~~s--g------------- 164 (673)
T KOG4378|consen 101 GCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT-IDS--G------------- 164 (673)
T ss_pred ceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee-cCC--C-------------
Confidence 899999999666666665 46899999997 467775 667889999988876543332 111 0
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
-.+ |.|-|+..+ |.
T Consensus 165 qsv--Rll~ys~sk--------------------------------------r~-------------------------- 178 (673)
T KOG4378|consen 165 QSV--RLLRYSPSK--------------------------------------RF-------------------------- 178 (673)
T ss_pred CeE--EEeeccccc--------------------------------------ce--------------------------
Confidence 001 556664210 00
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEee-cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEE
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDP-SGILLVTASVQGHNINIFK 350 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwd 350 (701)
++..+.++|.|.+||+....++..+. +|..|...|||+| +..+||+.+.|.+ |++||
T Consensus 179 --------------------lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD 237 (673)
T KOG4378|consen 179 --------------------LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYD 237 (673)
T ss_pred --------------------eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEee
Confidence 12335678999999999988877664 9999999999999 5678999999976 99999
Q ss_pred cCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee-cCCCCC
Q 005349 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDAN 424 (701)
Q Consensus 351 l~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~-~~H~~~ 424 (701)
+... ....+|- ..+....++|+++|.+|++|+++|.|.-||+.....++.. ..|...
T Consensus 238 ~~s~--------------~s~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s 295 (673)
T KOG4378|consen 238 IRSQ--------------ASTDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS 295 (673)
T ss_pred cccc--------------cccceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc
Confidence 9754 1112221 1235889999999999999999999999999988888755 566433
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.37 E-value=2.4e-11 Score=130.73 Aligned_cols=214 Identities=20% Similarity=0.289 Sum_probs=150.1
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+-++..|.++-++|||+++ .+....+..|.+.|..+.|--.+ ..|.. ++
T Consensus 215 kylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt-------------~~lys-~s---------------- 263 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGT-------------SELYS-AS---------------- 263 (479)
T ss_pred cEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCc-------------cceee-ee----------------
Confidence 4444456677899999998 45666788899999998875321 11221 11
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe-cCCCEEEEEec--CCEEEEE-eCCEEEEEECCCCceeEEEec
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~-f~s~V~sV~~s--~~~LaVa-~~~~I~iwDl~t~~~~~tl~t 173 (701)
.+.+|++|++..-.++.++- +.+.|.+|... .+.+.|. -|.++++|++..-..+ ....
T Consensus 264 -----------------~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifrg 325 (479)
T KOG0299|consen 264 -----------------ADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFRG 325 (479)
T ss_pred -----------------cCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee-eeeC
Confidence 23779999999999888874 57899999985 4666664 7999999999432211 1111
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEE
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~ 253 (701)
+. +. ...+||-
T Consensus 326 ~~---~s----------------idcv~~I-------------------------------------------------- 336 (479)
T KOG0299|consen 326 GE---GS----------------IDCVAFI-------------------------------------------------- 336 (479)
T ss_pred CC---CC----------------eeeEEEe--------------------------------------------------
Confidence 00 00 0011111
Q ss_pred cCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEee-cCC-----------
Q 005349 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHK----------- 321 (701)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-~H~----------- 321 (701)
. ..||++++.+|.|.+|++..++++.+.+ +|.
T Consensus 337 -n-----------------------------------~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~ 380 (479)
T KOG0299|consen 337 -N-----------------------------------DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGN 380 (479)
T ss_pred -c-----------------------------------ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccc
Confidence 0 1256778899999999999999988776 553
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEe
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 399 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS 399 (701)
..|++|+.-|...+||++|.+|. +|+|.+.++ ......++.+. -...|++|+|+++|++|.+|-
T Consensus 381 ~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g----------~r~i~~l~~ls---~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 381 FWITSLAVIPGSDLLASGSWSGC-VRLWKIEDG----------LRAINLLYSLS---LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cceeeeEecccCceEEecCCCCc-eEEEEecCC----------ccccceeeecc---cccEEEEEEEccCCCEEEEec
Confidence 27999999999999999999997 999999887 22335566653 234599999999999887773
No 107
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.36 E-value=7.4e-11 Score=137.80 Aligned_cols=238 Identities=18% Similarity=0.253 Sum_probs=160.5
Q ss_pred CCcEEEEeccCC-eEEEEecC------CCC-----------eeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEE
Q 005349 17 TRRVLLLGYRSG-FQVWDVEE------ADN-----------VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLV 78 (701)
Q Consensus 17 ~~~vL~~g~~~g-~qVwdv~~------~~~-----------~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rplla 78 (701)
..+.|+.|.++. ++||.-+. .+. +..++..|++-|..+.+.|+. -+||
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~--------------~~lv 145 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD--------------SLLV 145 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc--------------cEEE
Confidence 478888888877 69999883 111 344555677777777777642 1454
Q ss_pred EEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeC
Q 005349 79 FCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQA 154 (701)
Q Consensus 79 vv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~ 154 (701)
.++ .+++|.|||.++.+++++|+- .+.|..|.|. ++++|+ +.|
T Consensus 146 S~s---------------------------------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdD 192 (942)
T KOG0973|consen 146 SVS---------------------------------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDD 192 (942)
T ss_pred Eec---------------------------------ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCC
Confidence 443 237899999999999999985 6899999997 699999 789
Q ss_pred CEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCc
Q 005349 155 AQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGS 234 (701)
Q Consensus 155 ~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~ 234 (701)
++|+||++.+....+++...-.. ++. ..+- +-|-
T Consensus 193 rtikvwrt~dw~i~k~It~pf~~--~~~--------~T~f---~RlS--------------------------------- 226 (942)
T KOG0973|consen 193 RTLKVWRTSDWGIEKSITKPFEE--SPL--------TTFF---LRLS--------------------------------- 226 (942)
T ss_pred ceEEEEEcccceeeEeeccchhh--CCC--------ccee---eecc---------------------------------
Confidence 99999998887766666432110 000 0000 0000
Q ss_pred ceeehhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEE
Q 005349 235 RVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI 314 (701)
Q Consensus 235 ~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i 314 (701)
..|||+. +.+++. + .+..-++.|.+-.+-+.-
T Consensus 227 ----------------------------------WSPDG~~-las~nA------~-------n~~~~~~~IieR~tWk~~ 258 (942)
T KOG0973|consen 227 ----------------------------------WSPDGHH-LASPNA------V-------NGGKSTIAIIERGTWKVD 258 (942)
T ss_pred ----------------------------------cCCCcCe-ecchhh------c-------cCCcceeEEEecCCceee
Confidence 1122210 000000 0 011235777777777777
Q ss_pred EEeecCCCCeEEEEEcCC-----CC------------EEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 315 AQFRAHKSPISALCFDPS-----GI------------LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 315 ~~~~~H~~~Is~laFSPd-----G~------------lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
..|-+|..|+.+++|+|. -+ .+|+||.|++ |-||..... +.+...+.
T Consensus 259 ~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS-lSVW~T~~~--------------RPl~vi~~- 322 (942)
T KOG0973|consen 259 KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRS-LSVWNTALP--------------RPLFVIHN- 322 (942)
T ss_pred eeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCcc-EEEEecCCC--------------Cchhhhhh-
Confidence 889999999999999983 11 6899999987 899987543 33332221
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 378 ~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
.....|.|++|||||.-|.++|.||||.++.++.
T Consensus 323 lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 323 LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 1234599999999999999999999999999864
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.36 E-value=1.7e-11 Score=130.92 Aligned_cols=109 Identities=20% Similarity=0.410 Sum_probs=89.2
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeecCC--CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 294 FPDADNVGMVIVRDIVSKNVIAQFRAHK--SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~i~~~~~H~--~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
+.++++||+....|+.++..+......+ -.+++.+|+|||.+|+++..||. ++|||+... ..+
T Consensus 318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~-vkiwdlks~--------------~~~ 382 (506)
T KOG0289|consen 318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV-VKIWDLKSQ--------------TNV 382 (506)
T ss_pred EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCce-EEEEEcCCc--------------ccc
Confidence 4456788999999999998877666532 35899999999999999999996 999999876 233
Q ss_pred EEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 005349 372 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 372 ~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~ 419 (701)
-+| -|| .+.|..|+||.+|.|||++++|+.|++||+.+.....++.
T Consensus 383 a~F-pgh-t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 383 AKF-PGH-TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred ccC-CCC-CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence 455 354 4679999999999999999999999999998876544443
No 109
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.36 E-value=1.3e-10 Score=120.26 Aligned_cols=205 Identities=17% Similarity=0.257 Sum_probs=129.3
Q ss_pred CcEEEEEECCCCcEEEEEec-CCCEEEEEec-----CCEEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcc
Q 005349 116 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS-----SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 189 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s-----~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~ 189 (701)
+-+|+|||+++...+..|-. .+.|.++.|. .++|+.+.|++|.+||....+++.++..|.. .
T Consensus 62 DetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~------------~ 129 (362)
T KOG0294|consen 62 DETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG------------Q 129 (362)
T ss_pred CCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc------------c
Confidence 37899999999998887754 6789999995 2678888999999999999999999988743 1
Q ss_pred cceeeecc-ceEEEc--CCC-ceecC--CCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccc-eec
Q 005349 190 YGPLAVGP-RWLAYS--GSP-VVVSN--DGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGY-KKL 262 (701)
Q Consensus 190 ~~piAls~-r~LAya--~~~-~~~s~--~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~-~~l 262 (701)
++-+++-| .-||.+ ++. +..|+ .||. +| ..|
T Consensus 130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~------------------------------------------a~v~~L 167 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV------------------------------------------AFVLNL 167 (362)
T ss_pred cceeEecCCCceEEEEcCCceeeeehhhcCcc------------------------------------------ceeecc
Confidence 33355544 223322 111 11221 1110 00 011
Q ss_pred ccccc--cccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEe
Q 005349 263 SQYCS--EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS 340 (701)
Q Consensus 263 s~y~~--~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS 340 (701)
..+.. .++|. +.+|+-. ....|-||.+.+-++...+... ..+.|+.|.. +..|++|.
T Consensus 168 ~~~at~v~w~~~------------------Gd~F~v~-~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~-~~~L~vG~ 226 (362)
T KOG0294|consen 168 KNKATLVSWSPQ------------------GDHFVVS-GRNKIDIYQLDNASVFREIENP-KRILCATFLD-GSELLVGG 226 (362)
T ss_pred CCcceeeEEcCC------------------CCEEEEE-eccEEEEEecccHhHhhhhhcc-ccceeeeecC-CceEEEec
Confidence 11100 00000 1134333 2345677777765544333322 3577777765 44577777
Q ss_pred CCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEE--cCCCCEEEEEeCCCcEEEEecCCC
Q 005349 341 VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISF--SDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 341 ~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaF--SpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
+++. |++||.... .++..+ .+| .++|-++.+ .|++.+|+++|+||.|+|||+...
T Consensus 227 d~~~-i~~~D~ds~--------------~~~~~~-~AH-~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 227 DNEW-ISLKDTDSD--------------TPLTEF-LAH-ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCce-EEEeccCCC--------------ccceee-ecc-hhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 7876 999998764 344444 344 457999985 679999999999999999999764
No 110
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.35 E-value=2e-10 Score=120.82 Aligned_cols=183 Identities=15% Similarity=0.190 Sum_probs=141.4
Q ss_pred cEEEEEECCCCcEEEEEe-cCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~-f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
..-.||++.+|+...++. ++..|.++.|| +.+||. .++++|.||+..++.....+... . +-
T Consensus 86 D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e-----~----------~d 150 (399)
T KOG0296|consen 86 DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE-----V----------ED 150 (399)
T ss_pred ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecc-----c----------Cc
Confidence 456899999999888885 58899999997 678888 57999999999999877776521 0 01
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
| .||-.-. . +.
T Consensus 151 i----eWl~WHp-------------~--------------a~-------------------------------------- 161 (399)
T KOG0296|consen 151 I----EWLKWHP-------------R--------------AH-------------------------------------- 161 (399)
T ss_pred e----EEEEecc-------------c--------------cc--------------------------------------
Confidence 1 2444321 0 00
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~ 352 (701)
.+..+..||.|..|.+.++...+.|.+|..++++=.|.|||+.++++..||+ |++|+.+
T Consensus 162 --------------------illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt-i~~Wn~k 220 (399)
T KOG0296|consen 162 --------------------ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT-IIVWNPK 220 (399)
T ss_pred --------------------EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce-EEEEecC
Confidence 1223567899999999999899999999999999999999999999999998 8999999
Q ss_pred CCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 005349 353 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 353 ~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~ 419 (701)
++ ..++++. +.......++.++.++..+..|+.++.+++-...+.+-...+.
T Consensus 221 tg--------------~p~~~~~-~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 221 TG--------------QPLHKIT-QAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred CC--------------ceeEEec-ccccCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence 98 4556653 2222346789999999999999999999998876654333433
No 111
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.35 E-value=4.6e-11 Score=128.10 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=78.0
Q ss_pred cCCCCeEEEEECCCC-cEEEEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 297 ADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~-~~i~~~~~H~~~Is~laFSPd-G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
+..||+|+-+|+++. +++.++++|..+|++|++++. -.+|+|+|.|+. +++|++....+ ...+-+.+
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~----------~~v~~~~~ 416 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSP----------KSVKEHSF 416 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCC----------cccccccc
Confidence 457899999999975 899999999999999999996 557999999986 99999865411 11222233
Q ss_pred eccCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEecCCC
Q 005349 375 QRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpD-g~~lAsgS~dgTI~Iwdl~~~ 412 (701)
.-| +..|.++.|+ .-++|.|+..+.++|||+.+.
T Consensus 417 ~~~----rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 417 KLG----RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ccc----ceeecccCCCcceEEEecCccceEEEeecccC
Confidence 222 2677888884 457888999999999999764
No 112
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=2.9e-11 Score=138.12 Aligned_cols=110 Identities=16% Similarity=0.309 Sum_probs=90.9
Q ss_pred ccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeE
Q 005349 292 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (701)
Q Consensus 292 ~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~ 370 (701)
+.+.++.-|.+|+||++....+++.| .|..-|+||+|+| |.+++++||-||+ +|||+|... .+..
T Consensus 381 ~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~K-vRiWsI~d~------------~Vv~ 446 (712)
T KOG0283|consen 381 NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGK-VRLWSISDK------------KVVD 446 (712)
T ss_pred CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeecccccc-eEEeecCcC------------eeEe
Confidence 45677889999999999999999999 5889999999999 8999999999998 999999865 2222
Q ss_pred EEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecC
Q 005349 371 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (701)
Q Consensus 371 l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~ 420 (701)
-+.++ .-|+.+||+|||++.++|+-+|.+++|+.....-...++.
T Consensus 447 W~Dl~-----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 447 WNDLR-----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred ehhhh-----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 22332 2499999999999999999999999999876544444443
No 113
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=3e-11 Score=124.95 Aligned_cols=129 Identities=16% Similarity=0.272 Sum_probs=88.5
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCC------CC--C-ccC
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG------TS--S-ACD 363 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~------~~--s-~~~ 363 (701)
++.++..||.|.+||..+-.++..|++|.+.|+.|+.+|+|++-.+.+.|+. +|.|++..+..+ +- . ...
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~-lr~WNLV~Gr~a~v~~L~~~at~v~w~ 177 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV-LRTWNLVRGRVAFVLNLKNKATLVSWS 177 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCce-eeeehhhcCccceeeccCCcceeeEEc
Confidence 4456778999999999999999999999999999999999999999999986 999999887210 00 0 000
Q ss_pred CC--------CceeEEEEEec------cCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCC
Q 005349 364 AG--------TSYVHLYRLQR------GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (701)
Q Consensus 364 ~~--------~~~~~l~~l~r------G~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~ 423 (701)
.. .....+|.+.. -..+.++.|+.|- ++..|++|.+|++|.+||.+.......|.+|.+
T Consensus 178 ~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~ 250 (362)
T KOG0294|consen 178 PQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN 250 (362)
T ss_pred CCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh
Confidence 00 11112222210 0011224455553 566788888888888888887555566677743
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=1.5e-11 Score=126.74 Aligned_cols=111 Identities=14% Similarity=0.264 Sum_probs=90.7
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
..+++.-|.+..+||++++.++..+.+|.+..+.++-.|.-++.+|+|.|-+ +|+||.++. ..-+.
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT-FRLWDFRea-------------I~sV~ 351 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT-FRLWDFREA-------------IQSVA 351 (481)
T ss_pred eeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce-eEeccchhh-------------cceee
Confidence 4566778899999999999999999999999999999999999999999965 999999864 12233
Q ss_pred EEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCce-eecC
Q 005349 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV-NFQP 420 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~-~~~~ 420 (701)
.| .|++. .|+++.|.-|. .+++||+|.||+|||+..-..+. +++.
T Consensus 352 VF-QGHtd-tVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt 397 (481)
T KOG0300|consen 352 VF-QGHTD-TVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT 397 (481)
T ss_pred ee-ccccc-ceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeec
Confidence 33 57764 49999999885 57799999999999997655443 4443
No 115
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=1.8e-12 Score=145.30 Aligned_cols=175 Identities=15% Similarity=0.281 Sum_probs=131.4
Q ss_pred cEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
..+-||..-.-..+..|.. .++|.+|.|+ .++|+. +.+++|++||+...+.+++|.+|-. ++
T Consensus 50 ~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~--------------~~ 115 (825)
T KOG0267|consen 50 EKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLL--------------NI 115 (825)
T ss_pred eeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhcccc--------------Cc
Confidence 4566666555555555554 6799999997 356665 5678999999999998888877632 11
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
+. ++|.. |+.
T Consensus 116 ~s-----v~f~P------------------------------------------------------------~~~----- 125 (825)
T KOG0267|consen 116 TS-----VDFHP------------------------------------------------------------YGE----- 125 (825)
T ss_pred ce-----eeecc------------------------------------------------------------ceE-----
Confidence 11 11110 000
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~ 352 (701)
.++.+..|+.+.+||++...|...+++|...|.++.|+|+|++++.+.+|.+ ++|||+.
T Consensus 126 --------------------~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~~ 184 (825)
T KOG0267|consen 126 --------------------FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDLT 184 (825)
T ss_pred --------------------EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce-eeeeccc
Confidence 0122456788999999998999999999999999999999999999999865 9999998
Q ss_pred CCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 353 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 353 ~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
.+ ..+.+|. ++ ...|+.+.|.|..-.+++||.|+|+++||++++
T Consensus 185 ag--------------k~~~ef~-~~-e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 185 AG--------------KLSKEFK-SH-EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred cc--------------ccccccc-cc-cccccccccCchhhhhccCCCCceeeeecccee
Confidence 76 4455553 22 346899999999999999999999999999854
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2e-10 Score=115.46 Aligned_cols=248 Identities=17% Similarity=0.226 Sum_probs=161.3
Q ss_pred CcEEEEeccCCeEEEEecCCCC--eeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADN--VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~--~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~ 95 (701)
+++...+.++.++|+.+.+++. ....+..|.|||--+.+.- | .| -.+||-|.
T Consensus 24 krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wah-P--------k~---G~iLAScs-------------- 77 (299)
T KOG1332|consen 24 KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAH-P--------KF---GTILASCS-------------- 77 (299)
T ss_pred ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecc-c--------cc---CcEeeEee--------------
Confidence 6666777788899999998763 3444567999999887751 2 11 13566554
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec---CCCEEEEEecC----CEEEE-EeCCEEEEEECCCC-c
Q 005349 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF---RSPIYSVRCSS----RVVAI-CQAAQVHCFDAATL-E 166 (701)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f---~s~V~sV~~s~----~~LaV-a~~~~I~iwDl~t~-~ 166 (701)
+++.|.||.-..|+--+...| .+.|.+|++-+ -+|++ +.|++|.|++..+- .
T Consensus 78 -------------------YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 78 -------------------YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred -------------------cCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 347899999999865444443 67899999953 45666 68999999987753 1
Q ss_pred e-eEEE-ecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhch
Q 005349 167 I-EYAI-LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 244 (701)
Q Consensus 167 ~-~~tl-~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~s 244 (701)
- ...+ ..|+ ++.+.++..| ...+ |..+.+
T Consensus 139 w~t~ki~~aH~------------~GvnsVswap--------------------a~~~-----------g~~~~~------ 169 (299)
T KOG1332|consen 139 WTTSKIVFAHE------------IGVNSVSWAP--------------------ASAP-----------GSLVDQ------ 169 (299)
T ss_pred ccchhhhhccc------------cccceeeecC--------------------cCCC-----------cccccc------
Confidence 1 1111 1121 2334333211 0000 111100
Q ss_pred hchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc--EEEEeecCCC
Q 005349 245 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKS 322 (701)
Q Consensus 245 k~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~--~i~~~~~H~~ 322 (701)
..++ + ...++++..|..|+||+..+++ .-..|++|+.
T Consensus 170 -~~~~-----------------------------------~-----~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d 208 (299)
T KOG1332|consen 170 -GPAA-----------------------------------K-----VKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD 208 (299)
T ss_pred -Cccc-----------------------------------c-----cceeeccCCccceeeeecCCcchhhhhhhhhcch
Confidence 0000 0 1134567788999999999863 3456899999
Q ss_pred CeEEEEEcCCC----CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEE
Q 005349 323 PISALCFDPSG----ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (701)
Q Consensus 323 ~Is~laFSPdG----~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsg 398 (701)
-|..+++.|.- .+||+||.||+ +.||..... .+. + ....|.+| +..++.++||..|+.||.+
T Consensus 209 wVRDVAwaP~~gl~~s~iAS~SqDg~-viIwt~~~e-~e~-----w--k~tll~~f-----~~~~w~vSWS~sGn~LaVs 274 (299)
T KOG1332|consen 209 WVRDVAWAPSVGLPKSTIASCSQDGT-VIIWTKDEE-YEP-----W--KKTLLEEF-----PDVVWRVSWSLSGNILAVS 274 (299)
T ss_pred hhhhhhhccccCCCceeeEEecCCCc-EEEEEecCc-cCc-----c--cccccccC-----CcceEEEEEeccccEEEEe
Confidence 99999999973 47999999998 789987632 000 0 11222222 2349999999999999999
Q ss_pred eCCCcEEEEecCCCCC
Q 005349 399 SSRGTSHLFAINPLGG 414 (701)
Q Consensus 399 S~dgTI~Iwdl~~~g~ 414 (701)
..|+.|.+|.=+..|.
T Consensus 275 ~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 275 GGDNKVTLWKENVDGK 290 (299)
T ss_pred cCCcEEEEEEeCCCCc
Confidence 9999999998765543
No 117
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.2e-11 Score=144.91 Aligned_cols=233 Identities=17% Similarity=0.228 Sum_probs=162.9
Q ss_pred cEEEEeccCC-eEEEEecC--CCCeeEEee---eccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCcccc
Q 005349 19 RVLLLGYRSG-FQVWDVEE--ADNVHDLVS---RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (701)
Q Consensus 19 ~vL~~g~~~g-~qVwdv~~--~~~~~elvs---~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~ 92 (701)
-|++.|..+| +-+||.+. .++..+++. .|.|+|+.+.|-+. .+++||-..+
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~-------------q~nlLASGa~---------- 137 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF-------------QGNLLASGAD---------- 137 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc-------------CCceeeccCC----------
Confidence 4788888776 99999987 355555554 68999999988642 2346652221
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEE---ecCCCEEEEEecC---CEEEEE-eCCEEEEEECCCC
Q 005349 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHML---KFRSPIYSVRCSS---RVVAIC-QAAQVHCFDAATL 165 (701)
Q Consensus 93 d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL---~f~s~V~sV~~s~---~~LaVa-~~~~I~iwDl~t~ 165 (701)
++.|.||||..-+.-.++ .+.+.|..|++|+ ++||.+ ..+++.|||++.-
T Consensus 138 -----------------------~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 138 -----------------------DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred -----------------------CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 167999999875544433 3678999999985 678875 4569999999987
Q ss_pred ceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchh
Q 005349 166 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (701)
Q Consensus 166 ~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk 245 (701)
+.+..+..++... .++.+ ++.
T Consensus 195 ~pii~ls~~~~~~----------~~S~l-------~Wh------------------------------------------ 215 (1049)
T KOG0307|consen 195 KPIIKLSDTPGRM----------HCSVL-------AWH------------------------------------------ 215 (1049)
T ss_pred CcccccccCCCcc----------ceeee-------eeC------------------------------------------
Confidence 6554444332110 01111 111
Q ss_pred chhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCC-CcEEEEeecCCCCe
Q 005349 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KNVIAQFRAHKSPI 324 (701)
Q Consensus 246 ~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s-~~~i~~~~~H~~~I 324 (701)
|+..+.+..++ ..+..-.|.+||++. ..+++.+++|...|
T Consensus 216 -------------------------P~~aTql~~As--------------~dd~~PviqlWDlR~assP~k~~~~H~~Gi 256 (1049)
T KOG0307|consen 216 -------------------------PDHATQLLVAS--------------GDDSAPVIQLWDLRFASSPLKILEGHQRGI 256 (1049)
T ss_pred -------------------------CCCceeeeeec--------------CCCCCceeEeecccccCCchhhhcccccce
Confidence 11111111111 112335799999885 45788899999999
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC-CCCEEEEEeCCC
Q 005349 325 SALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRG 402 (701)
Q Consensus 325 s~laFSPdG-~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dg 402 (701)
.+|.|.+.+ .+|+|+..|++ |.+|+..++ +.++++-++ ...+.++.|+| +-..+|++|-||
T Consensus 257 lslsWc~~D~~lllSsgkD~~-ii~wN~~tg--------------Evl~~~p~~--~nW~fdv~w~pr~P~~~A~asfdg 319 (1049)
T KOG0307|consen 257 LSLSWCPQDPRLLLSSGKDNR-IICWNPNTG--------------EVLGELPAQ--GNWCFDVQWCPRNPSVMAAASFDG 319 (1049)
T ss_pred eeeccCCCCchhhhcccCCCC-eeEecCCCc--------------eEeeecCCC--CcceeeeeecCCCcchhhhheecc
Confidence 999999966 99999999998 899999987 778888542 23489999999 555999999999
Q ss_pred cEEEEecCCC
Q 005349 403 TSHLFAINPL 412 (701)
Q Consensus 403 TI~Iwdl~~~ 412 (701)
+|-||.+...
T Consensus 320 kI~I~sl~~~ 329 (1049)
T KOG0307|consen 320 KISIYSLQGT 329 (1049)
T ss_pred ceeeeeeecC
Confidence 9999999754
No 118
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.30 E-value=1.1e-10 Score=126.48 Aligned_cols=261 Identities=16% Similarity=0.255 Sum_probs=166.1
Q ss_pred CCCcEEEEeccCCeEEEEecCCCCeeEEee-----eccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCcc
Q 005349 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVS-----RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTK 90 (701)
Q Consensus 16 ~~~~vL~~g~~~g~qVwdv~~~~~~~elvs-----~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~ 90 (701)
..+.|+..| .++++|||+...++-. -++ .+|.=+|.++++|+.+ .|| +++.
T Consensus 430 ~trhVyTgG-kgcVKVWdis~pg~k~-PvsqLdcl~rdnyiRSckL~pdgr-------------tLi--vGGe------- 485 (705)
T KOG0639|consen 430 PTRHVYTGG-KGCVKVWDISQPGNKS-PVSQLDCLNRDNYIRSCKLLPDGR-------------TLI--VGGE------- 485 (705)
T ss_pred CcceeEecC-CCeEEEeeccCCCCCC-ccccccccCcccceeeeEecCCCc-------------eEE--eccc-------
Confidence 347777666 8889999998653221 111 2466677777776542 232 3321
Q ss_pred ccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCC---CEEEEEecC--CE-EEEEeCCEEEEEECCC
Q 005349 91 VQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS---PIYSVRCSS--RV-VAICQAAQVHCFDAAT 164 (701)
Q Consensus 91 ~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s---~V~sV~~s~--~~-LaVa~~~~I~iwDl~t 164 (701)
-.+|.||||.+-..--..+.++ ..|++++|+ ++ ++.+.|+.|.|||+.+
T Consensus 486 -------------------------astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 486 -------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN 540 (705)
T ss_pred -------------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc
Confidence 1679999998776544444443 567888874 33 3457899999999999
Q ss_pred CceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhch
Q 005349 165 LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 244 (701)
Q Consensus 165 ~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~s 244 (701)
-..++++.+|++ +..+|.++. +....|..| -+.+|..|..+..
T Consensus 541 q~~VrqfqGhtD------------GascIdis~-------dGtklWTGG------------------lDntvRcWDlreg 583 (705)
T KOG0639|consen 541 QTLVRQFQGHTD------------GASCIDISK-------DGTKLWTGG------------------LDNTVRCWDLREG 583 (705)
T ss_pred ceeeecccCCCC------------CceeEEecC-------CCceeecCC------------------Cccceeehhhhhh
Confidence 989999988864 122344331 111223222 1345666665555
Q ss_pred hchhceeEEcCCccceecccccccc--cCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCC
Q 005349 245 KHLAAGIVNLGDLGYKKLSQYCSEF--LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKS 322 (701)
Q Consensus 245 k~la~gl~~lGd~g~~~ls~y~~~~--~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~ 322 (701)
+++.. ..+++..+.+ +|.+ .| ++.+...+.|.|.... +....++.-|.+
T Consensus 584 rqlqq----------hdF~SQIfSLg~cP~~---------dW---------lavGMens~vevlh~s-kp~kyqlhlheS 634 (705)
T KOG0639|consen 584 RQLQQ----------HDFSSQIFSLGYCPTG---------DW---------LAVGMENSNVEVLHTS-KPEKYQLHLHES 634 (705)
T ss_pred hhhhh----------hhhhhhheecccCCCc---------cc---------eeeecccCcEEEEecC-Cccceeeccccc
Confidence 55542 1111111111 1111 11 2234455667776654 334567778999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCC
Q 005349 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dg 402 (701)
-|.+|+|.+.|+++++.+.|. .++.|...-| ..++.... ...|.++..|-|.+||++||.|.
T Consensus 635 cVLSlKFa~cGkwfvStGkDn-lLnawrtPyG--------------asiFqskE---~SsVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 635 CVLSLKFAYCGKWFVSTGKDN-LLNAWRTPYG--------------ASIFQSKE---SSSVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred EEEEEEecccCceeeecCchh-hhhhccCccc--------------cceeeccc---cCcceeeeeccCceEEEecCCCc
Confidence 999999999999999999996 5899998765 34444432 23599999999999999999999
Q ss_pred cEEEEec
Q 005349 403 TSHLFAI 409 (701)
Q Consensus 403 TI~Iwdl 409 (701)
...||.+
T Consensus 697 kATVYeV 703 (705)
T KOG0639|consen 697 KATVYEV 703 (705)
T ss_pred ceEEEEE
Confidence 8888875
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.30 E-value=1.1e-10 Score=130.60 Aligned_cols=168 Identities=14% Similarity=0.214 Sum_probs=125.2
Q ss_pred CCcEEEEEECCCCcEEEEEe-cCCCEEEEEec--CCEEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccc
Q 005349 115 VPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 191 (701)
Q Consensus 115 ~~~tVriWdl~tg~~v~tL~-f~s~V~sV~~s--~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~ 191 (701)
+++|+++|-. ++++.+++ +...|++|.+- ..+|..+.|++|++|.. +++++++.+|.++.
T Consensus 120 WD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~V------------- 182 (745)
T KOG0301|consen 120 WDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCV------------- 182 (745)
T ss_pred cccceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccchhhe-------------
Confidence 6699999974 56666666 47899999883 34555688999999987 45566776664310
Q ss_pred eeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccC
Q 005349 192 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (701)
Q Consensus 192 piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p 271 (701)
|-||.- +
T Consensus 183 ------RgL~vl-------------------------------------------------------------------~ 189 (745)
T KOG0301|consen 183 ------RGLAVL-------------------------------------------------------------------D 189 (745)
T ss_pred ------eeeEEe-------------------------------------------------------------------c
Confidence 222211 0
Q ss_pred CCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 005349 272 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 351 (701)
Q Consensus 272 ~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl 351 (701)
..+|+++++||.|++||+ ++.++..+.+|++-|.+++..+++.+++|+++|++ +|||+.
T Consensus 190 -------------------~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~ 248 (745)
T KOG0301|consen 190 -------------------DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKK 248 (745)
T ss_pred -------------------CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeec
Confidence 114566789999999999 78899999999999999999999999999999998 899997
Q ss_pred CCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 352 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 352 ~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
.. +...+.- ....|+++++=++|. |++|++||.|+||...+.
T Consensus 249 ~e----------------~~q~I~l--PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 249 DE----------------CVQVITL--PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred Cc----------------eEEEEec--CccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 62 3334421 122499999887775 568889999999998743
No 120
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.29 E-value=3.2e-11 Score=130.52 Aligned_cols=112 Identities=18% Similarity=0.323 Sum_probs=87.5
Q ss_pred CCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCC-------------CCCCccCC
Q 005349 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-------------GTSSACDA 364 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~-------------~~~s~~~~ 364 (701)
..||.|.|||+.+...+.+|++|+..++||..++||+.|=||+-|.+ +|.||++++.. +.....+|
T Consensus 528 csdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt-vRcWDlregrqlqqhdF~SQIfSLg~cP~~dW 606 (705)
T KOG0639|consen 528 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT-VRCWDLREGRQLQQHDFSSQIFSLGYCPTGDW 606 (705)
T ss_pred ccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc-eeehhhhhhhhhhhhhhhhhheecccCCCccc
Confidence 46799999999999999999999999999999999999999999987 99999988621 11111222
Q ss_pred C------CceeE-------EEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 005349 365 G------TSYVH-------LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 365 ~------~~~~~-------l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g 413 (701)
. +.++. .|.| +.+...|.++.|++.|+|+++.+.|+-+-.|.. ++|
T Consensus 607 lavGMens~vevlh~skp~kyql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrt-PyG 665 (705)
T KOG0639|consen 607 LAVGMENSNVEVLHTSKPEKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT-PYG 665 (705)
T ss_pred eeeecccCcEEEEecCCccceee--cccccEEEEEEecccCceeeecCchhhhhhccC-ccc
Confidence 1 11111 2333 233456999999999999999999999999997 444
No 121
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.28 E-value=1.7e-10 Score=121.74 Aligned_cols=118 Identities=16% Similarity=0.231 Sum_probs=94.9
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
+..+...|.+|++||+.++..+..+... .+++|+..+|...+||+||.|.+ ||+||-+++ .+ + ...+
T Consensus 273 v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~-irl~DPR~~-~g---------s-~v~~ 339 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRH-IRLWDPRTG-DG---------S-VVSQ 339 (423)
T ss_pred ceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCc-eeecCCCCC-CC---------c-eeEE
Confidence 4456788999999999999998888765 48999999999999999999976 999998876 11 1 2234
Q ss_pred EEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCC-CceeecCCCCCc
Q 005349 373 RLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLG-GSVNFQPTDANF 425 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~~g-~~~~~~~H~~~~ 425 (701)
.| -||.+ .|..+.|+| +-..|+++|.|+|+++||+.... ....+.+|.+.+
T Consensus 340 s~-~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKv 392 (423)
T KOG0313|consen 340 SL-IGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV 392 (423)
T ss_pred ee-ecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceE
Confidence 44 36654 699999999 55668899999999999999877 456888885443
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.28 E-value=1.3e-10 Score=130.10 Aligned_cols=207 Identities=16% Similarity=0.250 Sum_probs=139.2
Q ss_pred cEEEEEECCCCcEEEEEecCCC---EEE-EEe--c--CCEEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCc
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSP---IYS-VRC--S--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 188 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~---V~s-V~~--s--~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~ 188 (701)
++++||+-+.++++.+..|..+ |.. +++ + .++++...|+.|.+|...+.+.+++|.+|..-
T Consensus 35 ~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn----------- 103 (745)
T KOG0301|consen 35 GTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN----------- 103 (745)
T ss_pred CceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc-----------
Confidence 7899999999998887666432 222 333 2 34555578999999999999999999998541
Q ss_pred ccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccc
Q 005349 189 GYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 268 (701)
Q Consensus 189 ~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~ 268 (701)
.++++. ..+..+. ++|=+.++. ++..|+..|.
T Consensus 104 ---VC~ls~-----~~~~~~i-------------------SgSWD~Tak-------------vW~~~~l~~~-------- 135 (745)
T KOG0301|consen 104 ---VCSLSI-----GEDGTLI-------------------SGSWDSTAK-------------VWRIGELVYS-------- 135 (745)
T ss_pred ---eeeeec-----CCcCceE-------------------ecccccceE-------------Eecchhhhcc--------
Confidence 122210 0000000 011122221 2223333322
Q ss_pred ccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005349 269 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINI 348 (701)
Q Consensus 269 ~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~I 348 (701)
++....++. ++....-.++++++.|.+|++|.- ++.+++|.+|+.-|..|++=+++. |++|+.||. |+.
T Consensus 136 -l~gH~asVW------Av~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~ 204 (745)
T KOG0301|consen 136 -LQGHTASVW------AVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRL 204 (745)
T ss_pred -cCCcchhee------eeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCce-EEE
Confidence 111111111 111112236788899999999975 778999999999999999998876 779999997 999
Q ss_pred EEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 349 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 349 wdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
|++ ++ .++++++ ||++ -|++++..+++..+++++.|+|++||+..
T Consensus 205 w~~-~g--------------e~l~~~~-ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 205 WDL-DG--------------EVLLEMH-GHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred Eec-cC--------------ceeeeee-ccce-EEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 999 44 5777764 6654 49999988999999999999999999987
No 123
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.28 E-value=2.2e-11 Score=129.32 Aligned_cols=186 Identities=16% Similarity=0.249 Sum_probs=129.4
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
.++++.+.++++..||++.. .....-.-++-.|.+++|.+++- -+++++.+
T Consensus 325 ~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk-------------~vl~v~~d--------------- 375 (519)
T KOG0293|consen 325 FRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGK-------------YVLLVTVD--------------- 375 (519)
T ss_pred ceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCc-------------EEEEEecc---------------
Confidence 45666677788999999852 21212222344577888766431 14444432
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecC
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTN 174 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~ 174 (701)
..+++|+.++..++..+.-..+|.++.++ ++++.| ..+.+|++||+...+.++...++
T Consensus 376 -------------------~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh 436 (519)
T KOG0293|consen 376 -------------------KKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH 436 (519)
T ss_pred -------------------cceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc
Confidence 56999999999888878888899999996 567666 56889999999965554444443
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEc
Q 005349 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (701)
Q Consensus 175 ~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~l 254 (701)
.. + -+.+ -+
T Consensus 437 kq--~------------~fiI------rS--------------------------------------------------- 445 (519)
T KOG0293|consen 437 KQ--G------------HFII------RS--------------------------------------------------- 445 (519)
T ss_pred cc--c------------ceEE------Ee---------------------------------------------------
Confidence 21 0 0100 00
Q ss_pred CCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC-CC
Q 005349 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SG 333 (701)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP-dG 333 (701)
|+ . |....-+++++.|+.|+||+..+++++..+.+|...|+||+++| |-
T Consensus 446 -----------CF--------------g-----g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p 495 (519)
T KOG0293|consen 446 -----------CF--------------G-----GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADP 495 (519)
T ss_pred -----------cc--------------C-----CCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCH
Confidence 00 0 00001234577899999999999999999999999999999999 67
Q ss_pred CEEEEEeCCCcEEEEEEcCC
Q 005349 334 ILLVTASVQGHNINIFKIIP 353 (701)
Q Consensus 334 ~lLaTaS~dGt~I~Iwdl~~ 353 (701)
.+||+||+||+ ||||-...
T Consensus 496 ~m~ASasDDgt-IRIWg~~~ 514 (519)
T KOG0293|consen 496 EMFASASDDGT-IRIWGPSD 514 (519)
T ss_pred HHhhccCCCCe-EEEecCCc
Confidence 79999999998 99998754
No 124
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=2.6e-10 Score=118.00 Aligned_cols=246 Identities=17% Similarity=0.229 Sum_probs=159.2
Q ss_pred CCcEEEEeccCC-eEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 005349 17 TRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (701)
Q Consensus 17 ~~~vL~~g~~~g-~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~ 95 (701)
-+..|++|+.+| +.|||..+.+ ...+++.|--||.++..+++++ -||. .+
T Consensus 34 ~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr-------------~Llt-sS-------------- 84 (405)
T KOG1273|consen 34 WGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGR-------------KLLT-SS-------------- 84 (405)
T ss_pred CcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCC-------------Eeee-ec--------------
Confidence 377899999887 9999999864 7788899999999999987542 2332 11
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEecC---C-EEEEEeCCEEEEEECCCCceeEEE
Q 005349 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSS---R-VVAICQAAQVHCFDAATLEIEYAI 171 (701)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s~---~-~LaVa~~~~I~iwDl~t~~~~~tl 171 (701)
.+..|++||+..|.+++.++|+++|+...+-+ + .||.-.+..-.+-++.. .++++
T Consensus 85 -------------------~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~ 143 (405)
T KOG1273|consen 85 -------------------RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSV 143 (405)
T ss_pred -------------------CCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC--Cceee
Confidence 12679999999999999999999999999953 2 23333444333333333 11111
Q ss_pred ecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhcee
Q 005349 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (701)
Q Consensus 172 ~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl 251 (701)
... .+ .| .+..+ ++.+
T Consensus 144 Lp~----------------------------d~-------d~-----dln~s------as~~------------------ 159 (405)
T KOG1273|consen 144 LPK----------------------------DD-------DG-----DLNSS------ASHG------------------ 159 (405)
T ss_pred ccC----------------------------CC-------cc-----ccccc------cccc------------------
Confidence 110 00 00 00000 0000
Q ss_pred EEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCC-CCeEEEEEc
Q 005349 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK-SPISALCFD 330 (701)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~-~~Is~laFS 330 (701)
.|. . -...+.++...|.+.|+|..+.++++.|+-.+ ..|-.+-|+
T Consensus 160 ------~fd---------------------r-------~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s 205 (405)
T KOG1273|consen 160 ------VFD---------------------R-------RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS 205 (405)
T ss_pred ------ccc---------------------C-------CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEe
Confidence 000 0 01234556778999999999999999999776 899999999
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCC-CcEEEEec
Q 005349 331 PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAI 409 (701)
Q Consensus 331 PdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d-gTI~Iwdl 409 (701)
..|..|+.-..|. .||.|++..--. . +..+.....++++--.......+++||.||.|++++|.. ..+.||.-
T Consensus 206 ~~g~~liiNtsDR-vIR~ye~~di~~-~----~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 206 RKGRFLIINTSDR-VIRTYEISDIDD-E----GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred ccCcEEEEecCCc-eEEEEehhhhcc-c----CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEec
Confidence 9999999999995 599999874210 0 001112222333221122235789999999999988864 46899987
Q ss_pred CCCCCcee
Q 005349 410 NPLGGSVN 417 (701)
Q Consensus 410 ~~~g~~~~ 417 (701)
+.+ ..+.
T Consensus 280 ~~G-sLVK 286 (405)
T KOG1273|consen 280 SIG-SLVK 286 (405)
T ss_pred CCc-ceee
Confidence 653 4443
No 125
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.27 E-value=6.9e-11 Score=122.54 Aligned_cols=111 Identities=15% Similarity=0.221 Sum_probs=86.8
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC--C
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL--T 379 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~--~ 379 (701)
.+-||.-..+.++..+-+|.+.|+.|+|-+||..|.+|+..--.|-+||++.. ...+|.|.|.. |
T Consensus 231 ~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~-------------~~pv~~L~rhv~~T 297 (406)
T KOG2919|consen 231 RVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS-------------RDPVYALERHVGDT 297 (406)
T ss_pred eeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc-------------cchhhhhhhhccCc
Confidence 45566666778999999999999999999999999999987667999999864 24567776533 3
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCcee-ecCCCCCcc
Q 005349 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN-FQPTDANFT 426 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~-~~~H~~~~~ 426 (701)
+.+|+ ....|+|++||+|+.||.|++||++..|.++. +..|...++
T Consensus 298 NQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vN 344 (406)
T KOG2919|consen 298 NQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVN 344 (406)
T ss_pred cceEE-EecCCCCceeeccCCCccEEEEecCCCCCccccccccccccc
Confidence 43444 34468999999999999999999999888654 345544443
No 126
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.27 E-value=3.9e-10 Score=121.47 Aligned_cols=99 Identities=21% Similarity=0.291 Sum_probs=77.4
Q ss_pred CCCeEEEEECCCCc-EEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec
Q 005349 299 NVGMVIVRDIVSKN-VIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (701)
Q Consensus 299 ~dG~V~IwDl~s~~-~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r 376 (701)
+-|...+||++++. ....++-|...|..|+|+| .-.+|||||.|++ .+|||++.... ..+ -.++.+.
T Consensus 299 ~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~kIWD~R~l~~-K~s--------p~lst~~- 367 (498)
T KOG4328|consen 299 NVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT-AKIWDLRQLRG-KAS--------PFLSTLP- 367 (498)
T ss_pred cccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc-eeeeehhhhcC-CCC--------cceeccc-
Confidence 34678999998764 4677888999999999999 5678999999998 79999986511 100 1244442
Q ss_pred cCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 377 G~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
+...|.+..|||++-.|++.+.|.+|+|||.+
T Consensus 368 --HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 368 --HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred --ccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 22349999999988889999999999999985
No 127
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.6e-09 Score=112.09 Aligned_cols=108 Identities=19% Similarity=0.291 Sum_probs=77.0
Q ss_pred CCCeEEEEECCCC----cEEEEeecCCCCeEEEEEcCC-CC---EEEEEeCCCcEEEEEEcCCCCC---CCCC-ccCCC-
Q 005349 299 NVGMVIVRDIVSK----NVIAQFRAHKSPISALCFDPS-GI---LLVTASVQGHNINIFKIIPGIL---GTSS-ACDAG- 365 (701)
Q Consensus 299 ~dG~V~IwDl~s~----~~i~~~~~H~~~Is~laFSPd-G~---lLaTaS~dGt~I~Iwdl~~~~~---~~~s-~~~~~- 365 (701)
.-+.++||....+ ..+.++..|+.||.+|+|.|+ |+ +||+|+.|| |+||.+..... .... +....
T Consensus 197 ~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~ 274 (361)
T KOG2445|consen 197 HLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMT 274 (361)
T ss_pred cccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCcc
Confidence 3457888876543 356788899999999999996 44 899999999 89999985310 0000 00111
Q ss_pred -CceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 366 -TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 366 -~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
-.++.+..+ +.++..|+.++|.--|..|+++++||+|++|..+
T Consensus 275 ~l~v~~vs~~--~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 275 DLPVEKVSEL--DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ccceEEeeec--cCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 112223233 3355679999999999999999999999999865
No 128
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.26 E-value=7.8e-10 Score=114.02 Aligned_cols=188 Identities=12% Similarity=0.133 Sum_probs=126.0
Q ss_pred CcEEEEEECCCCcEEEEEecCCCEEEEEec----CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCccc
Q 005349 116 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~tL~f~s~V~sV~~s----~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~ 190 (701)
++.+++|||.+++....-.+..+|..++|= -..|+. +-|++|+.||.+.-..+.++.- |..
T Consensus 93 Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-------PeR------- 158 (347)
T KOG0647|consen 93 DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-------PER------- 158 (347)
T ss_pred CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-------cce-------
Confidence 478999999999766666678899999993 245666 6799999999998776666532 110
Q ss_pred ceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccccc
Q 005349 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (701)
Q Consensus 191 ~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~ 270 (701)
.|+. +.-+.++
T Consensus 159 ----------vYa~-------------------------------------Dv~~pm~---------------------- 169 (347)
T KOG0647|consen 159 ----------VYAA-------------------------------------DVLYPMA---------------------- 169 (347)
T ss_pred ----------eeeh-------------------------------------hccCcee----------------------
Confidence 1220 0000000
Q ss_pred CCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCC----CeEEEEEcCCCCEEEEEeCCCcEE
Q 005349 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKS----PISALCFDPSGILLVTASVQGHNI 346 (701)
Q Consensus 271 p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~----~Is~laFSPdG~lLaTaS~dGt~I 346 (701)
+.+..+..|.+|.|+++. .+|+.+.+ -+.||+.-+|....|-||..|+ +
T Consensus 170 ------------------------vVata~r~i~vynL~n~~--te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v 222 (347)
T KOG0647|consen 170 ------------------------VVATAERHIAVYNLENPP--TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-V 222 (347)
T ss_pred ------------------------EEEecCCcEEEEEcCCCc--chhhhhcCcccceeeEEEEEecCCceEeeeecce-E
Confidence 112234567888887643 34555544 4778888888888899999998 7
Q ss_pred EEEEcCCCCCCCCCccCCCCceeEEEEEeccC--Cc---ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCC
Q 005349 347 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGL--TN---AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (701)
Q Consensus 347 ~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~--~~---a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H 421 (701)
-|..+..+.. ...-.++.+|.. .. ..|.+|+|.|.-..|+++++|||.-.||-.......+...|
T Consensus 223 ~iq~id~~~~----------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~ 292 (347)
T KOG0647|consen 223 AIQYIDDPNP----------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH 292 (347)
T ss_pred EEEecCCCCc----------cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC
Confidence 8988876411 123345555521 11 12789999999999999999999999998765555455555
Q ss_pred CC
Q 005349 422 DA 423 (701)
Q Consensus 422 ~~ 423 (701)
..
T Consensus 293 ~q 294 (347)
T KOG0647|consen 293 PQ 294 (347)
T ss_pred CC
Confidence 43
No 129
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.25 E-value=4.1e-11 Score=125.74 Aligned_cols=217 Identities=13% Similarity=0.221 Sum_probs=138.0
Q ss_pred CCCcEEEEEECCCCcEEEEEec-CCCEEEEEec-CCEEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccc
Q 005349 114 SVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 191 (701)
Q Consensus 114 ~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s-~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~ 191 (701)
+.++.|+||||.+.+|..+++. .+.|+.|++. ..++.|+.|++|+.|-+.- ..++++.+.....++--.. ..
T Consensus 86 s~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~----~~- 159 (433)
T KOG0268|consen 86 SCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHR----KN- 159 (433)
T ss_pred ccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeecccccccccccc----cc-
Confidence 3679999999999999999987 5699999996 5777789999999998664 3555655432221110000 00
Q ss_pred eeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccC
Q 005349 192 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (701)
Q Consensus 192 piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p 271 (701)
.-.|.++.++-.|..-|-.|-. .+ .+|+.+|..
T Consensus 160 ------~~FaTcGe~i~IWD~~R~~Pv~--------------------------sm--------swG~Dti~s------- 192 (433)
T KOG0268|consen 160 ------SVFATCGEQIDIWDEQRDNPVS--------------------------SM--------SWGADSISS------- 192 (433)
T ss_pred ------ccccccCceeeecccccCCccc--------------------------ee--------ecCCCceeE-------
Confidence 0112222222223222211110 00 011111100
Q ss_pred CCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 005349 272 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 351 (701)
Q Consensus 272 ~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl 351 (701)
...+|.. ..-++++..|+.|.|||+...+++..+--- ..-+.|||+|.+--+++|+.|- ++..||+
T Consensus 193 ------vkfNpvE------TsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~-nlY~~Dm 258 (433)
T KOG0268|consen 193 ------VKFNPVE------TSILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANEDH-NLYTYDM 258 (433)
T ss_pred ------EecCCCc------chheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccccc-cceehhh
Confidence 0111111 112345678999999999998876654321 2336699999999999999995 5899998
Q ss_pred CCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 352 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 352 ~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
+.. .+-...++++.+| |.++.|||.|+-+++||-|.||+||.++..
T Consensus 259 R~l--------------~~p~~v~~dhvsA-V~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 259 RNL--------------SRPLNVHKDHVSA-VMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred hhh--------------cccchhhccccee-EEEeccCCCcchhccccccceEEEeecCCC
Confidence 764 2222344677766 999999999999999999999999999764
No 130
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.9e-09 Score=107.14 Aligned_cols=101 Identities=20% Similarity=0.341 Sum_probs=86.5
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeec--C-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCC
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRA--H-----KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAG 365 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~--H-----~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~ 365 (701)
.|+++.+|.+|+.||++-..++.++.. | .+.|.+++.+|.|++||++-.|.. ..+||++-+
T Consensus 196 m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~lydirg~----------- 263 (350)
T KOG0641|consen 196 MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLYDIRGG----------- 263 (350)
T ss_pred EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEEEeeCC-----------
Confidence 355678899999999998888887752 2 268999999999999999999975 899999877
Q ss_pred CceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 366 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 366 ~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
+.+++++. +.+.|.|+.|||...|+.++|-|..|++=|+.
T Consensus 264 ---r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 264 ---RMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred ---ceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 77777753 45779999999999999999999999999885
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=6.8e-10 Score=127.79 Aligned_cols=173 Identities=16% Similarity=0.226 Sum_probs=120.0
Q ss_pred cEEEEEECCCCcEEEEEe-cCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~-f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
..|++-++.+......++ +..+|..|.++ +++||| +.+++|+|||+.++.+.+++..-.-.... .. +-
T Consensus 118 ~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~-------~~-s~ 189 (933)
T KOG1274|consen 118 TAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF-------IL-SR 189 (933)
T ss_pred eeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc-------cc-cc
Confidence 679999999888777776 57899999996 578888 67999999999999888777542100000 00 00
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
+. ..+|+ .|+
T Consensus 190 i~---~~~aW-------------------------------------------------------------------~Pk 199 (933)
T KOG1274|consen 190 IC---TRLAW-------------------------------------------------------------------HPK 199 (933)
T ss_pred ee---eeeee-------------------------------------------------------------------cCC
Confidence 00 00111 111
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEee--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFK 350 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~--~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwd 350 (701)
+++++....++.|++|+..+......++ -|.+.+++++|||+|+|||+++.||. |-|||
T Consensus 200 ------------------~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~-I~vWn 260 (933)
T KOG1274|consen 200 ------------------GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQ-ILVWN 260 (933)
T ss_pred ------------------CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCc-EEEEe
Confidence 1234445568899999999988877776 34455999999999999999999998 89999
Q ss_pred cCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 005349 351 IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 406 (701)
Q Consensus 351 l~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~I 406 (701)
..+. .. +.++ ..|.+++|-|++.-+-.-...|+.-+
T Consensus 261 v~t~--------------~~-~~~~-----~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 261 VDTH--------------ER-HEFK-----RAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred cccc--------------hh-cccc-----ceeEEEecCCCCCeeEEEeecccccc
Confidence 9875 11 2222 23899999998877655444444333
No 132
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.6e-10 Score=119.70 Aligned_cols=107 Identities=14% Similarity=0.237 Sum_probs=86.2
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
+.++..|-.|.|||+. |+.+.++......-...+.||+|++||++...-. ++||.+--...|. ...+...+.
T Consensus 202 imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD-VkVwE~~f~kdG~------fqev~rvf~ 273 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD-VKVWEPIFTKDGT------FQEVKRVFS 273 (420)
T ss_pred EEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC-ceEEEEEeccCcc------hhhhhhhhe
Confidence 4467788899999999 8888888877777778899999999999998865 8999974331111 223455667
Q ss_pred EeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 374 l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
| .||.. .|..+|||++++.+++.|.||+++|||++
T Consensus 274 L-kGH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 274 L-KGHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred e-ccchh-heeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 7 47654 49999999999999999999999999986
No 133
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.23 E-value=7.3e-10 Score=119.46 Aligned_cols=178 Identities=17% Similarity=0.193 Sum_probs=129.9
Q ss_pred CcEEEEEECCCCcEEEEEec-CCCEEEEEec---CCEEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccc
Q 005349 116 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYG 191 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s---~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~ 191 (701)
++.|.|||.+|.+.++.++. +..|.+++|. .++.+.+.|+.|++|++..+..+.++-+|+..
T Consensus 223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~-------------- 288 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG-------------- 288 (479)
T ss_pred CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc--------------
Confidence 37899999999999999775 7799999994 47888899999999999998877676666421
Q ss_pred eeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccC
Q 005349 192 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (701)
Q Consensus 192 piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p 271 (701)
.++++ |.+ .+|
T Consensus 289 v~~Id----aL~--------reR--------------------------------------------------------- 299 (479)
T KOG0299|consen 289 VLGID----ALS--------RER--------------------------------------------------------- 299 (479)
T ss_pred eeeec----hhc--------ccc---------------------------------------------------------
Confidence 11110 000 000
Q ss_pred CCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 005349 272 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 351 (701)
Q Consensus 272 ~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl 351 (701)
-+..+..|.+++||++... ..-.|++|.+.|-|++|=.+ ..|+|||++|. |-+|++
T Consensus 300 ---------------------~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~ 355 (479)
T KOG0299|consen 300 ---------------------CVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSL 355 (479)
T ss_pred ---------------------eEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeee
Confidence 0011346889999999554 33578899999999999754 56899999997 999998
Q ss_pred CCCCCCCCCccCCCCceeEEEEEeccCCc--------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 352 IPGILGTSSACDAGTSYVHLYRLQRGLTN--------AVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 352 ~~~~~~~~s~~~~~~~~~~l~~l~rG~~~--------a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
....+ .+++.+-.|..+ ..|++++-.|.+..+|+||-+|.|++|.+++.
T Consensus 356 ~KKkp------------lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 356 LKKKP------------LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cccCc------------eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 76411 111111111111 25999999999999999999999999999875
No 134
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=1.6e-11 Score=136.78 Aligned_cols=325 Identities=23% Similarity=0.305 Sum_probs=188.1
Q ss_pred CcEEEEeccCC-eEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~~~g-~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
.-+++.||-.| .++|-....+++.+.+..+.|+|+...++++. +.++.+
T Consensus 252 Gy~~isglc~g~~~~g~gpglgg~~~~~vGrvg~vsaesV~g~~----------------~vivkd-------------- 301 (788)
T KOG2109|consen 252 GYVLISGLCRGSYQIGTGPGLGGFEEVLVGRVGPVSAESVLGNN----------------LVIVKD-------------- 301 (788)
T ss_pred hHHHHHHHhhcccCCCCCCCCCCcCceeccccccccceeecccc----------------eEEeec--------------
Confidence 44455566555 78888887788888888888888888776531 122222
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEecCCEEEEEeCCEEEEEECCCCceeEEEecCCC
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNPI 176 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~ 176 (701)
|=++.+...++..+++..+.+++-++-+|++++-..+.|++++.++..-++...
T Consensus 302 ------------------------f~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~-- 355 (788)
T KOG2109|consen 302 ------------------------FDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVS-- 355 (788)
T ss_pred ------------------------ccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEecccccccccc--
Confidence 112334445555555544444444667777777666777777776654444322
Q ss_pred ccCCCCCCCCCcccceeeeccceEEEcCCCcee-cCCCccCCcccccccccccc-cCCCcceeehhhhchhchhceeEEc
Q 005349 177 VMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVV-SNDGRVNPQHLMQSRSFSGF-ASNGSRVAHYAKESSKHLAAGIVNL 254 (701)
Q Consensus 177 ~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~-s~~gr~sp~~l~~s~~~~~~-~s~g~~v~~~a~~~sk~la~gl~~l 254 (701)
.+. +.++++++.++||+|..-.... +..+ ++|.+. ++...++..- +-+.+-|-.|+...
T Consensus 356 -~qs-------~~~s~ra~t~aviqdicfs~~s~~r~~----------gsc~Ge~P~ls~t~~lp-~~A~~Sl~~gl~s~ 416 (788)
T KOG2109|consen 356 -DQS-------LVVSPRANTAAVIQDICFSEVSTIRTA----------GSCEGEPPALSLTCQLP-AYADTSLDLGLQSS 416 (788)
T ss_pred -ccc-------cccchhcchHHHHHHHhhhhhcceEee----------cccCCCCcccccccccc-hhhchhhhcccccc
Confidence 111 2345667777777654311110 0000 000000 0011111100 00011122233333
Q ss_pred CCccceecc----cccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECC-----CC-cEEEEeecCCCCe
Q 005349 255 GDLGYKKLS----QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV-----SK-NVIAQFRAHKSPI 324 (701)
Q Consensus 255 Gd~g~~~ls----~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~-----s~-~~i~~~~~H~~~I 324 (701)
|......++ .|+...+-.+.-...+..++.|.+|...+..+. ...|.+.+.+.. ++ -.++.+-+|..++
T Consensus 417 g~~aa~gla~~sag~~a~s~~asSv~s~s~~pd~ks~gv~~gsv~k-~~q~~~~~l~~llv~~psGd~vvqh~vahs~~g 495 (788)
T KOG2109|consen 417 GGLAAEGLATSSAGYTAHSYTASSVFSRSVKPDSKSVGVGSGSVTK-ANQGVITVLNLLLVGEPSGDGVVQHYVAHSDPG 495 (788)
T ss_pred Ccccceeeeeccccccccccccceeeccccccchhhccceeeeccc-cCccchhhhhheeeecCCCCceeEEEeeccCcc
Confidence 322221111 122111100000001223444444433222222 222444444432 33 4677788999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcE
Q 005349 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 404 (701)
Q Consensus 325 s~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI 404 (701)
..+.|+|+++++.|++..++.+++|.+++...+.. ...+.|+|+++||.|.++|..++|+.|++|+|.....+|-
T Consensus 496 v~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wss-----laav~hly~l~rG~TsaKv~~~afs~dsrw~A~~t~~~Tt 570 (788)
T KOG2109|consen 496 VYIEFSPDQRLVLSADANENEFNIFLVMPHATWSS-----LAAVQHLYKLNRGSTSAKVVSTAFSEDSRWLAITTNHATT 570 (788)
T ss_pred ceeeecccccceecccccccccceEEeecccccHH-----HhhhhhhhhccCCCccceeeeeEeecchhhhhhhhcCCce
Confidence 99999999999999999999789999998744332 2345789999999999999999999999999999999999
Q ss_pred EEEecCCCCCceeecCCCC
Q 005349 405 HLFAINPLGGSVNFQPTDA 423 (701)
Q Consensus 405 ~Iwdl~~~g~~~~~~~H~~ 423 (701)
|||.+++|++....+.|++
T Consensus 571 hVfk~hpYgg~aeqrth~~ 589 (788)
T KOG2109|consen 571 HVFKVHPYGGKAEQRTHGD 589 (788)
T ss_pred eeeeeccccccccceecCC
Confidence 9999999999999999875
No 135
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=3.3e-10 Score=118.41 Aligned_cols=189 Identities=19% Similarity=0.211 Sum_probs=127.4
Q ss_pred cEEEEEECCCCcEEEEEec-CCCEEEEEec----CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCccc
Q 005349 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f-~s~V~sV~~s----~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~ 190 (701)
++|++||..||+.+..++. +..+..|+|. ++.|.+ +.|++|++||+++......+..-..+ +- .+
T Consensus 50 gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-~~--------~f 120 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-GT--------PF 120 (376)
T ss_pred CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-CC--------cc
Confidence 6799999999999999987 5677888883 455555 67999999999987655444321110 00 11
Q ss_pred ceeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccc
Q 005349 191 GPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 268 (701)
Q Consensus 191 ~piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~ 268 (701)
..++++- +.+|. |
T Consensus 121 ~~ld~nck~~ii~~-----------------------------------------------G------------------ 135 (376)
T KOG1188|consen 121 ICLDLNCKKNIIAC-----------------------------------------------G------------------ 135 (376)
T ss_pred eEeeccCcCCeEEe-----------------------------------------------c------------------
Confidence 1222110 00000 0
Q ss_pred ccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcE-EEEe-ecCCCCeEEEEEcC-CCCEEEEEeCCCcE
Q 005349 269 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV-IAQF-RAHKSPISALCFDP-SGILLVTASVQGHN 345 (701)
Q Consensus 269 ~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~-i~~~-~~H~~~Is~laFSP-dG~lLaTaS~dGt~ 345 (701)
+.. ...+-.|.+||++..+. +..+ ..|..-|++|+|.| |-.+|+|||.||-
T Consensus 136 ------------------------tE~-~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL- 189 (376)
T KOG1188|consen 136 ------------------------TEL-TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL- 189 (376)
T ss_pred ------------------------ccc-ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-
Confidence 000 12345799999998754 5544 48999999999999 5789999999995
Q ss_pred EEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCCCceee
Q 005349 346 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 346 I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg-~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
++|||+..... .-..+..+..| +.|-+|.|..++ +.|.+-+..++..+|+++...+...+
T Consensus 190 vnlfD~~~d~E----------eDaL~~viN~~---sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 190 VNLFDTKKDNE----------EDALLHVINHG---SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred EEeeecCCCcc----------hhhHHHhhccc---ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 99999976411 01122333222 348999999888 45778889999999999987654443
No 136
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.19 E-value=3.4e-09 Score=108.96 Aligned_cols=136 Identities=18% Similarity=0.269 Sum_probs=100.1
Q ss_pred CCcEEEEEECCCCcEEEEEecCCCEEEEEecC-----CEEEEEe-CCEEEEEECCCCceeEEEecCCCccCCCCCCCCCc
Q 005349 115 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSS-----RVVAICQ-AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 188 (701)
Q Consensus 115 ~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s~-----~~LaVa~-~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~ 188 (701)
-++++++||..|-+....++|+..||+-++++ -++|++. +-+|++.|+..+.+-++|.+|-.
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~------------ 189 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD------------ 189 (397)
T ss_pred ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC------------
Confidence 35999999999999999999999999888863 3556654 55999999999999999988732
Q ss_pred ccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccc
Q 005349 189 GYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 268 (701)
Q Consensus 189 ~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~ 268 (701)
+.+|+. ++ |. + . |
T Consensus 190 --~vlaV~-----Ws-------------p~-------------~-e------------------------------~--- 202 (397)
T KOG4283|consen 190 --GVLAVE-----WS-------------PS-------------S-E------------------------------W--- 202 (397)
T ss_pred --ceEEEE-----ec-------------cC-------------c-e------------------------------e---
Confidence 234431 11 00 0 0 0
Q ss_pred ccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC------------cE---EEEeecCCCCeEEEEEcCCC
Q 005349 269 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK------------NV---IAQFRAHKSPISALCFDPSG 333 (701)
Q Consensus 269 ~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~------------~~---i~~~~~H~~~Is~laFSPdG 333 (701)
.+++++.||.|++||++.- +. +..-.+|.+.|+.+||+.||
T Consensus 203 ------------------------vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~ 258 (397)
T KOG4283|consen 203 ------------------------VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA 258 (397)
T ss_pred ------------------------EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc
Confidence 1223456788888887642 11 12233788999999999999
Q ss_pred CEEEEEeCCCcEEEEEEcCCC
Q 005349 334 ILLVTASVQGHNINIFKIIPG 354 (701)
Q Consensus 334 ~lLaTaS~dGt~I~Iwdl~~~ 354 (701)
.+|+++..|.+ +++|+...|
T Consensus 259 ~~l~~~gtd~r-~r~wn~~~G 278 (397)
T KOG4283|consen 259 RYLASCGTDDR-IRVWNMESG 278 (397)
T ss_pred hhhhhccCccc-eEEeecccC
Confidence 99999999987 999998876
No 137
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.18 E-value=1.8e-10 Score=121.53 Aligned_cols=117 Identities=16% Similarity=0.282 Sum_probs=88.0
Q ss_pred ccccCCCCeEEEEECCCCc---EEEEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCcee
Q 005349 294 FPDADNVGMVIVRDIVSKN---VIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 369 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~---~i~~~~~H~~~Is~laFSPd-G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~ 369 (701)
+.+++..+.|++|...++. -...|.+|+..|-.|++||. ..+|||||.||+ |+|||++.++ ...
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~-----------~~~ 294 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGP-----------KKA 294 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCC-----------ccc
Confidence 3456667889999888764 22356689999999999996 668999999997 9999999762 112
Q ss_pred EEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCc---eeecCCCCCc
Q 005349 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS---VNFQPTDANF 425 (701)
Q Consensus 370 ~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~---~~~~~H~~~~ 425 (701)
++.+ .. +...|+-|+|+.+-.+||+|++|||++||||..+... ..|+-|..++
T Consensus 295 ~~~~--kA-h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 295 AVST--KA-HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI 350 (440)
T ss_pred eeEe--ec-cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence 3322 22 3457999999998889999999999999999865433 2556664433
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=7.9e-10 Score=119.40 Aligned_cols=222 Identities=15% Similarity=0.241 Sum_probs=138.2
Q ss_pred CCCCcEEEEe-ccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccC
Q 005349 15 GATRRVLLLG-YRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (701)
Q Consensus 15 ~~~~~vL~~g-~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d 93 (701)
.+.+.+|+.| -.+.+.+|-+.+ |+...++++|-.+|.|++|.-+.- . +.+++
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~aHYQ~ITcL~fs~dgs--------------~--iiTgs---------- 142 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSS-GILLNVLSAHYQSITCLKFSDDGS--------------H--IITGS---------- 142 (476)
T ss_pred CCCceEEEeecccCcEEEEEecc-ccHHHHHHhhccceeEEEEeCCCc--------------E--EEecC----------
Confidence 3558888888 677799999997 788888899999999999974320 1 12221
Q ss_pred CcccccCCCCCCCCCCCCCCCCCcEEEEEECC-------CC--cEEEEEec-CCCEEEEEec-----CCEEEEEeCCEEE
Q 005349 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLR-------SQ--SYVHMLKF-RSPIYSVRCS-----SRVVAICQAAQVH 158 (701)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~-------tg--~~v~tL~f-~s~V~sV~~s-----~~~LaVa~~~~I~ 158 (701)
.++.|.+|++. ++ +.++.+.- .=+|.++.+. .+++.++.|.+|+
T Consensus 143 ---------------------kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k 201 (476)
T KOG0646|consen 143 ---------------------KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK 201 (476)
T ss_pred ---------------------CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence 12557777652 11 23333332 2378888773 5778889999999
Q ss_pred EEECCCCceeEEEecCCCccCCCCCCCCCcccceeeecc-ceEEEcCCCceecCCCccCCcccccccccccccCCCccee
Q 005349 159 CFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP-RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVA 237 (701)
Q Consensus 159 iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~-r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~ 237 (701)
|||+..+..+.++.. |. ...++++.| ....|.+.. .|
T Consensus 202 ~wdlS~g~LLlti~f-p~------------si~av~lDpae~~~yiGt~-------------------------~G---- 239 (476)
T KOG0646|consen 202 LWDLSLGVLLLTITF-PS------------SIKAVALDPAERVVYIGTE-------------------------EG---- 239 (476)
T ss_pred EEEeccceeeEEEec-CC------------cceeEEEcccccEEEecCC-------------------------cc----
Confidence 999999998877753 21 234566665 333343210 01
Q ss_pred ehhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEe
Q 005349 238 HYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF 317 (701)
Q Consensus 238 ~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~ 317 (701)
......+ .++ ++ ...+-..+.++.. +..+..|
T Consensus 240 -------------~I~~~~~--~~~-------------------~~-------------~~~~v~~k~~~~~-~t~~~~~ 271 (476)
T KOG0646|consen 240 -------------KIFQNLL--FKL-------------------SG-------------QSAGVNQKGRHEE-NTQINVL 271 (476)
T ss_pred -------------eEEeeeh--hcC-------------------Cc-------------ccccccccccccc-cceeeee
Confidence 1100000 000 00 0000112233322 4466788
Q ss_pred ecCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCC
Q 005349 318 RAHKS--PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 391 (701)
Q Consensus 318 ~~H~~--~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpD 391 (701)
.+|.. +|+||+.+-||++|++|+.||+ +.|||+... +|+.++.. ....|+.+.+.|-
T Consensus 272 ~Gh~~~~~ITcLais~DgtlLlSGd~dg~-VcvWdi~S~--------------Q~iRtl~~--~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 272 VGHENESAITCLAISTDGTLLLSGDEDGK-VCVWDIYSK--------------QCIRTLQT--SKGPVTNLQINPL 330 (476)
T ss_pred ccccCCcceeEEEEecCccEEEeeCCCCC-EEEEecchH--------------HHHHHHhh--hccccceeEeecc
Confidence 89998 9999999999999999999998 899999875 55544421 1224777777553
No 139
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.17 E-value=1.5e-08 Score=110.35 Aligned_cols=104 Identities=13% Similarity=0.225 Sum_probs=83.1
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
.++++.+|+.++||+ ..+++-+.. -..++-|+.|+|.| .||.|...|+ --|.|+.+. .+.
T Consensus 382 q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~-w~V~d~e~~---------------~lv 441 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGR-WFVLDTETQ---------------DLV 441 (626)
T ss_pred heeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccce-EEEEecccc---------------eeE
Confidence 567888999999999 444443322 24689999999999 8999999998 568887763 444
Q ss_pred EEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
+++.- ++.+..++|||||.+||.||.|+.|.||.++..|.....
T Consensus 442 ~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r 485 (626)
T KOG2106|consen 442 TIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR 485 (626)
T ss_pred EEEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence 55432 567999999999999999999999999999998877654
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=3.2e-09 Score=118.97 Aligned_cols=190 Identities=19% Similarity=0.277 Sum_probs=129.4
Q ss_pred CcEEEEEECCCCcEEE-EEec--CCCEEEEEec--CCEEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCccc
Q 005349 116 PTVVHFYSLRSQSYVH-MLKF--RSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~-tL~f--~s~V~sV~~s--~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~ 190 (701)
++.|.||+++.+=+.. .|.. .+.|-+++|. .|++.+..++.|.-||+.+++.++.+..... ..
T Consensus 46 ~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg------------~I 113 (691)
T KOG2048|consen 46 DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGG------------AI 113 (691)
T ss_pred CCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCc------------ce
Confidence 4779999999875443 3333 5689999996 6788889999999999999998877654311 01
Q ss_pred ceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccccc
Q 005349 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (701)
Q Consensus 191 ~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~ 270 (701)
-.||+. |. + .
T Consensus 114 Wsiai~--------------------p~--------------~-----------~------------------------- 123 (691)
T KOG2048|consen 114 WSIAIN--------------------PE--------------N-----------T------------------------- 123 (691)
T ss_pred eEEEeC--------------------Cc--------------c-----------c-------------------------
Confidence 112211 00 0 0
Q ss_pred CCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEE--EEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005349 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI--AQFRAHKSPISALCFDPSGILLVTASVQGHNINI 348 (701)
Q Consensus 271 p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i--~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~I 348 (701)
.+.-+.+||.+..+++..++.. ..|...++.|.+|+|+|+|+.||+|+.||- |++
T Consensus 124 ----------------------~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~-Iri 180 (691)
T KOG2048|consen 124 ----------------------ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV-IRI 180 (691)
T ss_pred ----------------------eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce-EEE
Confidence 0111345675555665555432 344466789999999999999999999996 999
Q ss_pred EEcCCCCCCCCCccCCCCceeEEE-----EEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCC
Q 005349 349 FKIIPGILGTSSACDAGTSYVHLY-----RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (701)
Q Consensus 349 wdl~~~~~~~~s~~~~~~~~~~l~-----~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~ 423 (701)
||+..+ ...++. ++.++ .+..|+++.|=.|+ .||+|.+.|+|.+||-..+.-...+..|..
T Consensus 181 wd~~~~------------~t~~~~~~~~d~l~k~-~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a 246 (691)
T KOG2048|consen 181 WDVKSG------------QTLHIITMQLDRLSKR-EPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDA 246 (691)
T ss_pred EEcCCC------------ceEEEeeecccccccC-CceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhc
Confidence 999887 123322 22222 23448999998775 788999999999999877655556666654
Q ss_pred C
Q 005349 424 N 424 (701)
Q Consensus 424 ~ 424 (701)
.
T Consensus 247 d 247 (691)
T KOG2048|consen 247 D 247 (691)
T ss_pred c
Confidence 4
No 141
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.17 E-value=8.5e-10 Score=113.89 Aligned_cols=114 Identities=17% Similarity=0.269 Sum_probs=80.8
Q ss_pred ccccCCCCeEEEEECCCCcEEEEee-cCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCC-----CC--CCc---
Q 005349 294 FPDADNVGMVIVRDIVSKNVIAQFR-AHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-----GT--SSA--- 361 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~i~~~~-~H~-~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~-----~~--~s~--- 361 (701)
+++++.||.|+|||-.+++++.+|. +|. +.|.+..|..+|+++++.+.|.. +++|.+.++.. |. ...
T Consensus 276 YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t~R~l~~YtGAg~tgrq~~ 354 (430)
T KOG0640|consen 276 YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEISTGRMLKEYTGAGTTGRQKH 354 (430)
T ss_pred EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecCCceEEEEecCCcccchhh
Confidence 4567789999999999999999997 886 57999999999999999999975 99999988721 11 100
Q ss_pred -----c-CCC---------CceeEEEE---------EeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 362 -----C-DAG---------TSYVHLYR---------LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 362 -----~-~~~---------~~~~~l~~---------l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
+ +-+ +.-.|-|. +.-||+. .+..|.-||.+.-++++|+|-.++.|--
T Consensus 355 rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~-a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 355 RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNG-AVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCC-CceEEEeCCCCCceeeecccceeeeeee
Confidence 0 000 00001111 1124433 3778888888888888888888888854
No 142
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.16 E-value=3.4e-10 Score=125.87 Aligned_cols=112 Identities=13% Similarity=0.158 Sum_probs=74.2
Q ss_pred CCCeEEEEECCCCcE------EEEee--cC---CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCc
Q 005349 299 NVGMVIVRDIVSKNV------IAQFR--AH---KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 367 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~------i~~~~--~H---~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~ 367 (701)
.|+.|+||||..... ....+ -| .-.+.+|..+..|++|.....|++ |..|++.....
T Consensus 238 ~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s-Iy~ynm~s~s~----------- 305 (720)
T KOG0321|consen 238 ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS-IYFYNMRSLSI----------- 305 (720)
T ss_pred CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc-EEEEeccccCc-----------
Confidence 599999999987532 22222 33 247889999999987766666877 89999876511
Q ss_pred eeEEEEEeccCCccc-EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee-cCCCCC
Q 005349 368 YVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDAN 424 (701)
Q Consensus 368 ~~~l~~l~rG~~~a~-I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~-~~H~~~ 424 (701)
..+..+ .|.-... -..-+.|||+.+|++|+.|....||.++.....+.+ .+|.-+
T Consensus 306 -sP~~~~-sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~e 362 (720)
T KOG0321|consen 306 -SPVAEF-SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTRE 362 (720)
T ss_pred -Cchhhc-cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceE
Confidence 011111 1111111 122347999999999999999999999987766544 566533
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.16 E-value=1.8e-10 Score=121.51 Aligned_cols=106 Identities=19% Similarity=0.318 Sum_probs=86.2
Q ss_pred ccccccCCCCeEEEEECCCC---cEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCce
Q 005349 292 GHFPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 368 (701)
Q Consensus 292 ~~~~~~~~dG~V~IwDl~s~---~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~ 368 (701)
+.|++++.||.|+|||++++ .++ ..++|.+-|+.|.|+..-.+||+|++||+ ++|||++....+ +.
T Consensus 271 ~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~~---------~p 339 (440)
T KOG0302|consen 271 GVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFKSG---------QP 339 (440)
T ss_pred ceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcceeeecCCCce-EEEEEhhhccCC---------Cc
Confidence 45778889999999999987 344 34899999999999999889999999998 899999876221 11
Q ss_pred eEEEEEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCC
Q 005349 369 VHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 369 ~~l~~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
...++.+ .+.|++|.|+| +...||+++.|..|.|||+...
T Consensus 340 VA~fk~H----k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 340 VATFKYH----KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred ceeEEec----cCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 3334433 35699999998 7788999999999999999753
No 144
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=4.4e-09 Score=108.83 Aligned_cols=189 Identities=13% Similarity=0.087 Sum_probs=124.0
Q ss_pred CcEEEEEECCCCcEEEEEecCCCEEEEEec---CCEEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 116 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~tL~f~s~V~sV~~s---~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
++.|+.+|+.+++...-..+..+|.+|..+ +.+|+.+-|++|++||.+.-....++..-. .+..
T Consensus 74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-------------kVy~ 140 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-------------KVYC 140 (323)
T ss_pred CceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-------------eEEE
Confidence 388999999999988877888999999997 455666889999999998733222221100 0000
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
+.++ |
T Consensus 141 ~~v~------------------------------------g--------------------------------------- 145 (323)
T KOG1036|consen 141 MDVS------------------------------------G--------------------------------------- 145 (323)
T ss_pred Eecc------------------------------------C---------------------------------------
Confidence 1000 0
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA--HKSPISALCFDPSGILLVTASVQGHNINIFK 350 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~--H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwd 350 (701)
..++.+..+..|.+||+++.....+.+. -.-.+.||++-|++.=.|.+|.||+ +-+=.
T Consensus 146 -------------------~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~ 205 (323)
T KOG1036|consen 146 -------------------NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEY 205 (323)
T ss_pred -------------------CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEc
Confidence 0112234567899999998754433332 2347899999999999999999998 55544
Q ss_pred cCCCCCCCCCccCCCCceeEEEEEeccCC-----cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecC
Q 005349 351 IIPGILGTSSACDAGTSYVHLYRLQRGLT-----NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (701)
Q Consensus 351 l~~~~~~~~s~~~~~~~~~~l~~l~rG~~-----~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~ 420 (701)
+.+... . .+.+-.++.+|-.. -..|.+|+|+|--+.||||+.||-|-+||+.+.+....|..
T Consensus 206 ~d~s~~-~-------~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 206 FDDSEE-A-------QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK 272 (323)
T ss_pred cCCchH-H-------hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC
Confidence 433200 0 01111222222111 12388999999999999999999999999988766655544
No 145
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.14 E-value=3.7e-08 Score=107.41 Aligned_cols=100 Identities=17% Similarity=0.299 Sum_probs=78.8
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
+++.+...|.-.|.|.++...+..-.. ..++++|+|+|||.+||.||.|+. |.||.+... .+...
T Consensus 420 ~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~~-------------g~~y~ 484 (626)
T KOG2106|consen 420 VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSAN-------------GRKYS 484 (626)
T ss_pred eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe-EEEEEECCC-------------CcEEE
Confidence 455566789999999999655544445 889999999999999999999987 999999764 12222
Q ss_pred EEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005349 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwd 408 (701)
+.. -.+.+.|..+.||+|+++|.+-|.|-.|-.|+
T Consensus 485 r~~-k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 485 RVG-KCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred Eee-eecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 222 12225699999999999999999999999993
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=5.1e-10 Score=123.63 Aligned_cols=96 Identities=17% Similarity=0.222 Sum_probs=77.9
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
....|+|||+..+..++.+......|+.|+.+|.|.-|+.++.|++ +.+||+.-. ..-|+.-|-|
T Consensus 585 Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k-~~WfDldls--------------skPyk~lr~H 649 (733)
T KOG0650|consen 585 TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK-MCWFDLDLS--------------SKPYKTLRLH 649 (733)
T ss_pred eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe-eEEEEcccC--------------cchhHHhhhh
Confidence 3467999999998888888877789999999999999999999987 789998754 1223322333
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
. ..|.+++|.+-=.++|+||+|||++||.-.
T Consensus 650 ~-~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 650 E-KAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred h-hhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 3 349999999998999999999999999654
No 147
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.12 E-value=5.9e-08 Score=104.62 Aligned_cols=113 Identities=8% Similarity=0.108 Sum_probs=73.2
Q ss_pred CCCCeEEEEECCCCcEEE-------EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeE
Q 005349 298 DNVGMVIVRDIVSKNVIA-------QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~-------~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~ 370 (701)
..++.|.|||+.+...+. .+... .....++|+|||++|++++.....|.+||+... . .....
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~---------~~~~~ 213 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-H---------GEIEC 213 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-C---------CCEEE
Confidence 346789999997643221 12222 335679999999999888874455999999742 0 01123
Q ss_pred EEEEeccC----CcccEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCCceeecCC
Q 005349 371 LYRLQRGL----TNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSVNFQPT 421 (701)
Q Consensus 371 l~~l~rG~----~~a~I~~iaFSpDg~~lAsgS~-dgTI~Iwdl~~~g~~~~~~~H 421 (701)
+.++.... .......|+|+|||++|.++.. +++|.+|+++..++...+..|
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~ 269 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGH 269 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE
Confidence 33332110 0011346999999999999854 789999999877665555444
No 148
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.12 E-value=1.5e-09 Score=117.01 Aligned_cols=108 Identities=18% Similarity=0.155 Sum_probs=73.8
Q ss_pred cccCCCCeEEEEECCCCc----EEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeE
Q 005349 295 PDADNVGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~----~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~ 370 (701)
++++.|++++|||++.-. ++-..-.|+.+|++..|||+|-.|+|.+.|.+ |||||..-- + ..........|
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~--s--a~~~p~~~I~H 413 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCI--S--AKDEPLGTIPH 413 (498)
T ss_pred eecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccc--c--ccCCccceeec
Confidence 456678999999998632 33445589999999999998777999999977 999998410 0 00000111122
Q ss_pred EEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 371 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 371 l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
-....| +- .....+|.||..+|++|-.-..|-|||-+
T Consensus 414 n~~t~R--wl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 414 NNRTGR--WL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred cCcccc--cc-cchhheeCCCccEEEEeccCcceeEEcCC
Confidence 111111 11 14567899999999999999999999864
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.12 E-value=1.9e-09 Score=112.23 Aligned_cols=250 Identities=16% Similarity=0.217 Sum_probs=150.0
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
.-+.+.||.+-++|.|+.. +.+..-+..|.+.|..+++-|. +|.|.++..
T Consensus 106 p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~--------------~~qlvls~S--------------- 155 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPD--------------RPQLVLSAS--------------- 155 (385)
T ss_pred eeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCC--------------CCcEEEEec---------------
Confidence 4445557777799999987 5566666668889998888763 355555542
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe----cCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEE
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK----FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYA 170 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~----f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~t 170 (701)
.+.+||+|+++++.|+..+. ++..|.+|.|+ +++++. +.|.+|.+|++.+.+....
T Consensus 156 -----------------kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~ 218 (385)
T KOG1034|consen 156 -----------------KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNK 218 (385)
T ss_pred -----------------CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhh
Confidence 22779999999999999986 47899999997 466666 6899999999995432222
Q ss_pred EecC----CCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhc
Q 005349 171 ILTN----PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (701)
Q Consensus 171 l~t~----~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~ 246 (701)
|+.. +++.. .|+ +... .|+ +.|+..-.....
T Consensus 219 lE~s~~~~~~~t~-----------~pf---------pt~~-----------~~f---p~fst~diHrny----------- 253 (385)
T KOG1034|consen 219 LELSITYSPNKTT-----------RPF---------PTPK-----------THF---PDFSTTDIHRNY----------- 253 (385)
T ss_pred hhhhcccCCCCcc-----------CcC---------Cccc-----------ccc---ccccccccccch-----------
Confidence 2211 11100 010 0000 000 001000000000
Q ss_pred hhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCC--------------Cc
Q 005349 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS--------------KN 312 (701)
Q Consensus 247 la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s--------------~~ 312 (701)
+..++++|+.. .+.+-++.|..|-... -.
T Consensus 254 -VDCvrw~gd~i------------------------------------lSkscenaI~~w~pgkl~e~~~~vkp~es~~T 296 (385)
T KOG1034|consen 254 -VDCVRWFGDFI------------------------------------LSKSCENAIVCWKPGKLEESIHNVKPPESATT 296 (385)
T ss_pred -HHHHHHHhhhe------------------------------------eecccCceEEEEecchhhhhhhccCCCcccee
Confidence 11122333221 1222334555564410 12
Q ss_pred EEEEeecCCCCeEEEE--EcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC
Q 005349 313 VIAQFRAHKSPISALC--FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 390 (701)
Q Consensus 313 ~i~~~~~H~~~Is~la--FSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp 390 (701)
.+.+|.-....|..|. |+|-+++||.+...|+ +.+||+....+-. ...+++. ...+.|+..+||.
T Consensus 297 i~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~-v~vwdL~~~ep~~--------~ttl~~s----~~~~tVRQ~sfS~ 363 (385)
T KOG1034|consen 297 ILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGK-VYVWDLDNNEPPK--------CTTLTHS----KSGSTVRQTSFSR 363 (385)
T ss_pred eeeEeccCccceEEEEEeecHHHHHHhhccCCCc-EEEEECCCCCCcc--------CceEEec----cccceeeeeeecc
Confidence 3445554455666655 5566999999999997 8999998752100 1112222 1234599999999
Q ss_pred CCCEEEEEeCCCcEEEEec
Q 005349 391 DSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 391 Dg~~lAsgS~dgTI~Iwdl 409 (701)
||..|+..++|++|--||.
T Consensus 364 dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 364 DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCcEEEEEeCCCcEEEEEe
Confidence 9999999999999988885
No 150
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.12 E-value=3.4e-09 Score=118.87 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=85.0
Q ss_pred cccCCCCeEEEEECCCCcEEEEeecCC-----CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCcee
Q 005349 295 PDADNVGMVIVRDIVSKNVIAQFRAHK-----SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 369 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~~i~~~~~H~-----~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~ 369 (701)
++.+.|..|+..-.+.......|..|+ ..+..|+.+|+.++++|+..|.+ ||||++..+ +
T Consensus 565 iscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn-irif~i~sg--------------K 629 (1080)
T KOG1408|consen 565 ISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN-IRIFDIESG--------------K 629 (1080)
T ss_pred EeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc-eEEEecccc--------------c
Confidence 344555555544333322334555443 47889999999999999999965 999999987 3
Q ss_pred EEEEEe--ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 005349 370 HLYRLQ--RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 426 (701)
Q Consensus 370 ~l~~l~--rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~~~ 426 (701)
....|+ |++. .....+...|.|-|||++..|.|+-+||.....+.....+|+..+.
T Consensus 630 q~k~FKgs~~~e-G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VT 687 (1080)
T KOG1408|consen 630 QVKSFKGSRDHE-GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVT 687 (1080)
T ss_pred eeeeecccccCC-CceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchhee
Confidence 333332 3332 2366788999999999999999999999999888888899987644
No 151
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.12 E-value=7.8e-11 Score=126.87 Aligned_cols=209 Identities=17% Similarity=0.211 Sum_probs=136.6
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEEEEe--cCCEEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccceee
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRC--SSRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 194 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~sV~~--s~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piA 194 (701)
+.|-.+|..|+++..+|.....|++|.| +.+++||++..-++|||- .+..+++|..+.... -+
T Consensus 151 GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHClk~~~~v~-------------rL- 215 (545)
T KOG1272|consen 151 GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCLKRHIRVA-------------RL- 215 (545)
T ss_pred cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeehhhcCchh-------------hh-
Confidence 6788899999999999999999999999 689999999999999994 456678887653211 11
Q ss_pred eccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCCCC
Q 005349 195 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ 274 (701)
Q Consensus 195 ls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~ 274 (701)
++|-|----...+..|.+.-+.+ |.|..|+...... |+..
T Consensus 216 ---eFLPyHfLL~~~~~~G~L~Y~DV----------S~GklVa~~~t~~-----------G~~~---------------- 255 (545)
T KOG1272|consen 216 ---EFLPYHFLLVAASEAGFLKYQDV----------STGKLVASIRTGA-----------GRTD---------------- 255 (545)
T ss_pred ---cccchhheeeecccCCceEEEee----------chhhhhHHHHccC-----------Cccc----------------
Confidence 11222100000011222111111 2233332211111 1000
Q ss_pred CccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 005349 275 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (701)
Q Consensus 275 ~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~ 354 (701)
.-..+|- |+-+-.+...|+|.+|.-.+.+++..+-.|.++|++|+++++|+|+||++.|.. ++|||++..
T Consensus 256 --vm~qNP~-------NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~ 325 (545)
T KOG1272|consen 256 --VMKQNPY-------NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNF 325 (545)
T ss_pred --hhhcCCc-------cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccc
Confidence 0001111 112234667899999999999999999999999999999999999999999965 999999876
Q ss_pred CCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 355 ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 355 ~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
.++++++. +.....++||.-| .||.+- -.-++||.=
T Consensus 326 --------------~ql~t~~t---p~~a~~ls~Sqkg-lLA~~~-G~~v~iw~d 361 (545)
T KOG1272|consen 326 --------------YQLHTYRT---PHPASNLSLSQKG-LLALSY-GDHVQIWKD 361 (545)
T ss_pred --------------cccceeec---CCCcccccccccc-ceeeec-CCeeeeehh
Confidence 56666543 3346789999776 444433 336899963
No 152
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=2.7e-08 Score=111.69 Aligned_cols=100 Identities=16% Similarity=0.236 Sum_probs=85.4
Q ss_pred CCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE--Ee
Q 005349 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR--LQ 375 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~--l~ 375 (701)
+-+|.|.-||+.+++.+..+....++|.+++.+|.++.|+.+++|| .+..+++.++ ...|+ |.
T Consensus 87 g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddG-vl~~~s~~p~--------------~I~~~r~l~ 151 (691)
T KOG2048|consen 87 GLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDG-VLYDFSIGPD--------------KITYKRSLM 151 (691)
T ss_pred cCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCc-eEEEEecCCc--------------eEEEEeecc
Confidence 3568999999999999999999999999999999999999999999 4888888776 33333 32
Q ss_pred ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 005349 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (701)
Q Consensus 376 rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~ 414 (701)
| ..++|.+++|+|++..||+||.||.|++||+.....
T Consensus 152 r--q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 152 R--QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred c--ccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence 3 235799999999999999999999999999987543
No 153
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.10 E-value=6.3e-09 Score=107.70 Aligned_cols=98 Identities=14% Similarity=0.252 Sum_probs=79.9
Q ss_pred ccCCCCeEEEEECCC-CcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 296 DADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s-~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
+...|-+.++||++. -..+..|++|+..|+++.|.-|.+ ++++|+|.+ |+|||++... ..|.++
T Consensus 331 TsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrT-vKvWdLrNMR-------------splATI 395 (481)
T KOG0300|consen 331 TSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRT-VKVWDLRNMR-------------SPLATI 395 (481)
T ss_pred EeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCce-EEEeeecccc-------------Ccceee
Confidence 345678999999984 356789999999999999998776 789999976 9999998751 234555
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
+. ...+.-++.|.-+..||.--+.+-|+|||++-
T Consensus 396 Rt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 396 RT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred ec---CCccceeEeecCCceEEeccCCceEEEEecCC
Confidence 32 23488999999999999999999999999974
No 154
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=2.6e-09 Score=115.40 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=88.4
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCcc----CCCCce
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSAC----DAGTSY 368 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~----~~~~~~ 368 (701)
.+.+++.|.++++||+..+..+.++-- ..+|.+++.+|-++.+..|..+|. |-+.++.... +. +.. +.....
T Consensus 190 rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~-~~-~~~v~~k~~~~~~ 265 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLS-GQ-SAGVNQKGRHEEN 265 (476)
T ss_pred eEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcce-EEeeehhcCC-cc-ccccccccccccc
Confidence 455677899999999999988877653 358999999999999999999997 7777765431 10 100 000011
Q ss_pred eEEEEEeccCCc-ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 005349 369 VHLYRLQRGLTN-AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 369 ~~l~~l~rG~~~-a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~ 419 (701)
..+..+ -|+.. ..|.|++.|-||..|++|+.||++.|||+.......++.
T Consensus 266 t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 266 TQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 222333 35444 359999999999999999999999999998765544443
No 155
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=1.9e-10 Score=130.06 Aligned_cols=103 Identities=15% Similarity=0.267 Sum_probs=87.4
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
++++++||+|++||++..+-..+|++....|..|+|+| .+..++++.+.|. +++||++... ++..
T Consensus 149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~-lqlWDlRqp~-------------r~~~ 214 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY-LQLWDLRQPD-------------RCEK 214 (839)
T ss_pred EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCce-EEEeeccCch-------------hHHH
Confidence 45788999999999999999999999999999999999 6899999999987 8999998640 2222
Q ss_pred EEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
+| .-+...|.|+.|+|+..|||+|+.|++|+||++...
T Consensus 215 k~--~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 215 KL--TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred Hh--hcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence 22 223456999999999999999999999999999753
No 156
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.07 E-value=4.7e-09 Score=107.73 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=76.8
Q ss_pred ccccCCCCeEEEEECCC-CcEEEEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCCC-------CCCCccCC
Q 005349 294 FPDADNVGMVIVRDIVS-KNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGIL-------GTSSACDA 364 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s-~~~i~~~~~H~~~Is~laFSPd-G~lLaTaS~dGt~I~Iwdl~~~~~-------~~~s~~~~ 364 (701)
++++++||.|+|||.+. ..++..+.+|.+.|.++.|+|. .++|.|++.|.. +.+|....-.. ...+.+..
T Consensus 230 lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Lsca~svSSE~qi~~~~dese~e~ 308 (370)
T KOG1007|consen 230 LVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLSCASSVSSEQQIEFEDDESESED 308 (370)
T ss_pred EEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEEeccccccccccccccccccCcc
Confidence 34577899999999986 5688999999999999999995 778999999976 88887543210 00010000
Q ss_pred CCceeEEEEEecc------CCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCC
Q 005349 365 GTSYVHLYRLQRG------LTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 365 ~~~~~~l~~l~rG------~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~ 411 (701)
....++..-|..| .+-..|++++||. |-=.||+-|-||.+.|=.+.+
T Consensus 309 ~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 309 EDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0111110111111 1112399999987 544467788899998876654
No 157
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.5e-08 Score=112.27 Aligned_cols=297 Identities=17% Similarity=0.182 Sum_probs=175.9
Q ss_pred CCCcEEEEeccCC-eEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 16 ATRRVLLLGYRSG-FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 16 ~~~~vL~~g~~~g-~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
+...-|+.|.+.| ++||-+.+ +-+...+. -|+.|+|+.+-|.+ ..++||++.+.... .+.+.
T Consensus 410 p~G~wlasGsdDGtvriWEi~T-gRcvr~~~-~d~~I~~vaw~P~~------------~~~vLAvA~~~~~~---ivnp~ 472 (733)
T KOG0650|consen 410 PSGEWLASGSDDGTVRIWEIAT-GRCVRTVQ-FDSEIRSVAWNPLS------------DLCVLAVAVGECVL---IVNPI 472 (733)
T ss_pred CCcceeeecCCCCcEEEEEeec-ceEEEEEe-ecceeEEEEecCCC------------CceeEEEEecCceE---EeCcc
Confidence 3466677777766 99999998 44444444 47899999998864 34677777654410 01111
Q ss_pred cccc-cCC-CCCCCCCCCCCCCCCcEEEEEECCC---Cc--EEEEEecCCCEEEEEec--CCEEEEEeC----CEEEEEE
Q 005349 95 LATA-CNG-TSANYHDLGNGSSVPTVVHFYSLRS---QS--YVHMLKFRSPIYSVRCS--SRVVAICQA----AQVHCFD 161 (701)
Q Consensus 95 ~~~~-~~g-~~~~~~~~~~~~~~~~tVriWdl~t---g~--~v~tL~f~s~V~sV~~s--~~~LaVa~~----~~I~iwD 161 (701)
.+.- -.+ +.-..+...+....+..|-.|.-.. ++ .-.+|++..+|..|.+. +++||+... ..|.|++
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 1100 000 0000011112234456788996542 22 23467889999999995 689987543 6899999
Q ss_pred CCCCceeE---EEecCCCccCCCCCCCCCcccceeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcce
Q 005349 162 AATLEIEY---AILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRV 236 (701)
Q Consensus 162 l~t~~~~~---tl~t~~~~~~~~~~~~~~~~~~piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v 236 (701)
+......- ...+.+. .+.+-| -+|-.++ -..|
T Consensus 553 LSK~~sQ~PF~kskG~vq---------------~v~FHPs~p~lfVaT----------------------------q~~v 589 (733)
T KOG0650|consen 553 LSKRKSQSPFRKSKGLVQ---------------RVKFHPSKPYLFVAT----------------------------QRSV 589 (733)
T ss_pred cccccccCchhhcCCcee---------------EEEecCCCceEEEEe----------------------------ccce
Confidence 87543211 1111110 001111 0111110 0112
Q ss_pred eehh---hhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCC-Cc
Q 005349 237 AHYA---KESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KN 312 (701)
Q Consensus 237 ~~~a---~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s-~~ 312 (701)
..|. .+.-|.|..|+.++..+.. .|. | ..++-++.|+.+..+|+.- .+
T Consensus 590 RiYdL~kqelvKkL~tg~kwiS~msi----------hp~---------------G---Dnli~gs~d~k~~WfDldlssk 641 (733)
T KOG0650|consen 590 RIYDLSKQELVKKLLTGSKWISSMSI----------HPN---------------G---DNLILGSYDKKMCWFDLDLSSK 641 (733)
T ss_pred EEEehhHHHHHHHHhcCCeeeeeeee----------cCC---------------C---CeEEEecCCCeeEEEEcccCcc
Confidence 2222 2445556555555433211 111 1 1344567889999999874 46
Q ss_pred EEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcc---cEEEEEEc
Q 005349 313 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA---VIQDISFS 389 (701)
Q Consensus 313 ~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a---~I~~iaFS 389 (701)
+.++++-|...|.+|+|++.=-+||+||.||+ +.||--+-... - -.......+..| |||... .|.++.|.
T Consensus 642 Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfhg~VY~D---l--~qnpliVPlK~L-~gH~~~~~~gVLd~~wH 714 (733)
T KOG0650|consen 642 PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFHGMVYND---L--LQNPLIVPLKRL-RGHEKTNDLGVLDTIWH 714 (733)
T ss_pred hhHHhhhhhhhhhhhhhccccceeeeecCCCc-EEEEeeeeehh---h--hcCCceEeeeec-cCceeecccceEeeccc
Confidence 78899999999999999999999999999998 78885432200 0 001134556666 455322 28899999
Q ss_pred CCCCEEEEEeCCCcEEEE
Q 005349 390 DDSNWIMISSSRGTSHLF 407 (701)
Q Consensus 390 pDg~~lAsgS~dgTI~Iw 407 (701)
|.--||.+++.||||++|
T Consensus 715 P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 715 PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCCceEEecCCCceEEee
Confidence 999999999999999998
No 158
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=1.1e-08 Score=110.45 Aligned_cols=97 Identities=18% Similarity=0.311 Sum_probs=78.3
Q ss_pred cCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r 376 (701)
.+..|.|.|....++..+..|+-. +.|+.++|+.||+.|..++.+|. |.+||+... .+++++.-
T Consensus 321 ~G~~G~I~lLhakT~eli~s~Kie-G~v~~~~fsSdsk~l~~~~~~Ge-V~v~nl~~~--------------~~~~rf~D 384 (514)
T KOG2055|consen 321 AGNNGHIHLLHAKTKELITSFKIE-GVVSDFTFSSDSKELLASGGTGE-VYVWNLRQN--------------SCLHRFVD 384 (514)
T ss_pred cccCceEEeehhhhhhhhheeeec-cEEeeEEEecCCcEEEEEcCCce-EEEEecCCc--------------ceEEEEee
Confidence 345688888888888888888753 58999999999999999999997 899999876 45555421
Q ss_pred -cCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 377 -GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 377 -G~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
|.. .=+++|.|+++.|||+||..|-|-|||.+.
T Consensus 385 ~G~v--~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 385 DGSV--HGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred cCcc--ceeeeeecCCCceEEeccCcceEEEeccch
Confidence 211 146788899999999999999999999765
No 159
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.06 E-value=1.4e-07 Score=101.69 Aligned_cols=105 Identities=9% Similarity=0.103 Sum_probs=68.6
Q ss_pred CCCeEEEEECCC--C--cEEEEeecC------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCce
Q 005349 299 NVGMVIVRDIVS--K--NVIAQFRAH------KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 368 (701)
Q Consensus 299 ~dG~V~IwDl~s--~--~~i~~~~~H------~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~ 368 (701)
.++.|.+||+.. + +.+..+..+ ......+.|+|||++|+++......|.+|++.... ...
T Consensus 195 ~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~----------~~~ 264 (330)
T PRK11028 195 LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG----------SVL 264 (330)
T ss_pred CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC----------CeE
Confidence 357899999873 2 234444322 11234699999999999987655569999996530 011
Q ss_pred eEEEEEeccCCcccEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCCce
Q 005349 369 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSV 416 (701)
Q Consensus 369 ~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~-dgTI~Iwdl~~~g~~~ 416 (701)
..+.....|. ....++|+|||++|+++.. +++|.||+++...+..
T Consensus 265 ~~~~~~~~~~---~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 265 SFEGHQPTET---QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEeEEEeccc---cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 1222222221 2457899999999998876 8999999997554443
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.05 E-value=3e-07 Score=96.57 Aligned_cols=184 Identities=18% Similarity=0.296 Sum_probs=129.7
Q ss_pred CcEEEEEECCC-CcEEEEEec-CCCEEEEEec--CCEEEEEe--CCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcc
Q 005349 116 PTVVHFYSLRS-QSYVHMLKF-RSPIYSVRCS--SRVVAICQ--AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 189 (701)
Q Consensus 116 ~~tVriWdl~t-g~~v~tL~f-~s~V~sV~~s--~~~LaVa~--~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~ 189 (701)
++++++||..+ ...+..+.. ...|..+.++ .+.++++. ++.+++||+.+...+.++..+...
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 200 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP------------ 200 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc------------
Confidence 37899999998 677776665 5788889996 34555543 899999999986666666543110
Q ss_pred cceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccc
Q 005349 190 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 269 (701)
Q Consensus 190 ~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~ 269 (701)
+ ..++|.. . +..
T Consensus 201 ---v----~~~~~~~-------------~--------------~~~---------------------------------- 212 (466)
T COG2319 201 ---V----SSLAFSP-------------D--------------GGL---------------------------------- 212 (466)
T ss_pred ---e----EEEEEcC-------------C--------------cce----------------------------------
Confidence 1 0122220 0 000
Q ss_pred cCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEE-EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 005349 270 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINI 348 (701)
Q Consensus 270 ~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~-~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~I 348 (701)
.+.+...++.|++||...+..+. .+..|...+ ...|+|++.++++++.|+. +++
T Consensus 213 -----------------------~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~ 267 (466)
T COG2319 213 -----------------------LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRL 267 (466)
T ss_pred -----------------------EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEE
Confidence 01112467889999999888888 799999885 4489999999999999987 899
Q ss_pred EEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 005349 349 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 349 wdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~ 419 (701)
|++.... ..+..+ .++ ...|.++.|+|++..+++++.|+++++|++..........
T Consensus 268 ~~~~~~~-------------~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 268 WDLRSSS-------------SLLRTL-SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred eeecCCC-------------cEEEEE-ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence 9998651 123333 333 3459999999999999999999999999887665444443
No 161
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=5.2e-08 Score=109.45 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=55.3
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcE
Q 005349 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 404 (701)
Q Consensus 325 s~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI 404 (701)
.+++|||||++|+.++.++ +.+||+.++ ... .+..+. ...+++|+|||++|+.++.++.+
T Consensus 336 ~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g--------------~~~-~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~ 395 (429)
T PRK01742 336 YSAQISADGKTLVMINGDN--VVKQDLTSG--------------STE-VLSSTF---LDESPSISPNGIMIIYSSTQGLG 395 (429)
T ss_pred CCccCCCCCCEEEEEcCCC--EEEEECCCC--------------CeE-EecCCC---CCCCceECCCCCEEEEEEcCCCc
Confidence 4578999999999988764 566998776 111 121121 24568899999999999999999
Q ss_pred EEEecCC--CCCceeecCCCC
Q 005349 405 HLFAINP--LGGSVNFQPTDA 423 (701)
Q Consensus 405 ~Iwdl~~--~g~~~~~~~H~~ 423 (701)
.+|.+.. .+....+..|.+
T Consensus 396 ~~l~~~~~~G~~~~~l~~~~g 416 (429)
T PRK01742 396 KVLQLVSADGRFKARLPGSDG 416 (429)
T ss_pred eEEEEEECCCCceEEccCCCC
Confidence 9988743 333445666643
No 162
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.03 E-value=2.9e-09 Score=108.10 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=59.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCC
Q 005349 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dg 402 (701)
.|+.+..-||++.||||+-||+ ||||.-++. ..|..|. .+.+.|+++||+||...+|++|.|+
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~R-iRVyswrtl--------------~pLAVLk--yHsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHR-IRVYSWRTL--------------NPLAVLK--YHSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred CccceEEccCCcEEeecccCCc-EEEEEeccC--------------Cchhhhh--hhhcceeEEEeCCCCchhhhccCCc
Confidence 5777888899999999999998 999998887 3344442 2335699999999999999999999
Q ss_pred cEEEEec
Q 005349 403 TSHLFAI 409 (701)
Q Consensus 403 TI~Iwdl 409 (701)
+|-+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999987
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.01 E-value=1.5e-09 Score=120.34 Aligned_cols=101 Identities=22% Similarity=0.292 Sum_probs=83.6
Q ss_pred cccCCCCeEEEEECCCC-------cEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCC
Q 005349 295 PDADNVGMVIVRDIVSK-------NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGT 366 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~-------~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~ 366 (701)
+.+.+||.|+||.+..+ ++-..+.+|...|++|.|+| -...||++|.|-+ |+|||+...
T Consensus 644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~~~------------ 710 (1012)
T KOG1445|consen 644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLANA------------ 710 (1012)
T ss_pred eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehhhh------------
Confidence 44678999999998764 46678899999999999999 5779999999987 999999876
Q ss_pred ceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 367 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 367 ~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
..-.+| -||+ ..|.++||||||+.+|+.+.||+++||.-...
T Consensus 711 --~~~~~l-~gHt-dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 711 --KLYSRL-VGHT-DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred --hhhhee-ccCc-CceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 222234 3655 35999999999999999999999999986543
No 164
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.01 E-value=1.5e-09 Score=115.56 Aligned_cols=131 Identities=15% Similarity=0.243 Sum_probs=96.5
Q ss_pred ccccCCCCeEEEEECCCC---------cEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCC-CCCCccC
Q 005349 294 FPDADNVGMVIVRDIVSK---------NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-GTSSACD 363 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~---------~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~-~~~s~~~ 363 (701)
++++..|..|+||-+... ..+..|..|+..|+++.|+|+|.+||||+++|. |.+|....-.. .......
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~-v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE-VFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce-EEEEEecCcCCccccchhh
Confidence 456778899999987642 245677899999999999999999999999997 89997652110 0000111
Q ss_pred CCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcc
Q 005349 364 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFT 426 (701)
Q Consensus 364 ~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~~~ 426 (701)
.....+..++.-||+ ..+|++++|+||++++++++.|.++++||++.+.-...+..|..-+.
T Consensus 108 ~~ke~w~v~k~lr~h-~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGH-RDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred hCccceEEEEEeccc-ccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 112234555555775 35699999999999999999999999999998766667777754433
No 165
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.01 E-value=8.3e-09 Score=115.03 Aligned_cols=102 Identities=11% Similarity=0.095 Sum_probs=72.1
Q ss_pred CCCeEEEEECCCC--cEEEEeecCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 299 NVGMVIVRDIVSK--NVIAQFRAHKSP--ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 299 ~dG~V~IwDl~s~--~~i~~~~~H~~~--Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
.|+.|..|++.+. .++..|.+|... -..-..||||.+|++|+.|++ ..||.+.... .--.+
T Consensus 291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~-ayiw~vs~~e--------------~~~~~ 355 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ-AYIWVVSSPE--------------APPAL 355 (720)
T ss_pred cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc-eeeeeecCcc--------------CChhh
Confidence 4899999999863 456666655421 122357999999999999988 7999987641 11122
Q ss_pred eccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCce
Q 005349 375 QRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSV 416 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~~g~~~ 416 (701)
..|++. .|.+++|.| +-.-+|++|+|-+++||++..+.+..
T Consensus 356 l~Ght~-eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 356 LLGHTR-EVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred hhCcce-EEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence 246543 499999977 33456677999999999997765544
No 166
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.00 E-value=2.7e-08 Score=113.71 Aligned_cols=98 Identities=9% Similarity=0.251 Sum_probs=78.9
Q ss_pred CCCeEEEEECC-CCcEEEEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec
Q 005349 299 NVGMVIVRDIV-SKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (701)
Q Consensus 299 ~dG~V~IwDl~-s~~~i~~~~~H~~~Is~laFSPd-G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r 376 (701)
.|-+|+||.-. ...++-.+..+...|.+++|||. -..||+++.||+ |.|||+.....++ +.+...
T Consensus 418 gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWDLl~~~~~P------------v~s~~~ 484 (555)
T KOG1587|consen 418 GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWDLLQDDEEP------------VLSQKV 484 (555)
T ss_pred ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhhhhccccCC------------cccccc
Confidence 38999999988 77788889999999999999996 578999999998 8999997652211 122222
Q ss_pred cCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 377 G~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
+ ......+.|+++|+.||+|...|++|+|++..
T Consensus 485 ~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 485 C--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred c--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 2 23367888999999999999999999999964
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.99 E-value=1.5e-09 Score=113.03 Aligned_cols=100 Identities=22% Similarity=0.373 Sum_probs=86.7
Q ss_pred ccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd-G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
.++.-|.|+|.|+.++++...+++|...|+.|+|.|+ -+||++||.|. .||+|++.+. .|+..|
T Consensus 110 ~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~-svRlwnI~~~--------------~Cv~Vf 174 (385)
T KOG1034|consen 110 AGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDH-SVRLWNIQTD--------------VCVAVF 174 (385)
T ss_pred eecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCc-eEEEEeccCC--------------eEEEEe
Confidence 3456799999999999999999999999999999996 57999999995 5999999987 666665
Q ss_pred e--ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 375 Q--RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 375 ~--rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
- .|| ...|.++.|++||.+||+++.|-++++|+++.
T Consensus 175 GG~egH-rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 175 GGVEGH-RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred cccccc-cCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 2 232 23499999999999999999999999999984
No 168
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=1.7e-09 Score=111.95 Aligned_cols=127 Identities=19% Similarity=0.292 Sum_probs=88.5
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCC-----CCCc----cC
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG-----TSSA----CD 363 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~-----~~s~----~~ 363 (701)
.++.+..+|.|.|||+.+..+-+.|.+|..||++||||+||++|+|+|.|.. |.+||+..+..- ++.. ..
T Consensus 37 ~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s-i~lwDl~~gs~l~rirf~spv~~~q~h 115 (405)
T KOG1273|consen 37 YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS-IKLWDLLKGSPLKRIRFDSPVWGAQWH 115 (405)
T ss_pred eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCce-eEEEeccCCCceeEEEccCccceeeec
Confidence 4566788999999999999988999999999999999999999999999965 999999877210 0000 00
Q ss_pred CCCceeEEE----------EEec-----------cCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecC
Q 005349 364 AGTSYVHLY----------RLQR-----------GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (701)
Q Consensus 364 ~~~~~~~l~----------~l~r-----------G~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~ 420 (701)
.-....++. .+.. |.-+..-.+..|.+.|+++.+|+.+|.++|++.++......++.
T Consensus 116 p~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri 193 (405)
T KOG1273|consen 116 PRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI 193 (405)
T ss_pred cccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee
Confidence 000000111 1100 00000011234788899999999999999999999877666654
No 169
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.96 E-value=3.8e-07 Score=96.67 Aligned_cols=199 Identities=19% Similarity=0.285 Sum_probs=130.3
Q ss_pred EEEEEECCCCcEEEEEecC----CCEEEEEecC--CEEEE---EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCc
Q 005349 118 VVHFYSLRSQSYVHMLKFR----SPIYSVRCSS--RVVAI---CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGI 188 (701)
Q Consensus 118 tVriWdl~tg~~v~tL~f~----s~V~sV~~s~--~~LaV---a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~ 188 (701)
.|.|||+++=+.+++|.-. ..+.++.+|. .+||. ...+.|++||+.+.+..-++..|..
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~------------ 174 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG------------ 174 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC------------
Confidence 3999999999999999752 3466666664 47876 2457999999999998888887742
Q ss_pred ccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccc
Q 005349 189 GYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 268 (701)
Q Consensus 189 ~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~ 268 (701)
++| .||+.. +|..
T Consensus 175 ---~lA----alafs~---------------------------~G~l--------------------------------- 187 (391)
T KOG2110|consen 175 ---PLA----ALAFSP---------------------------DGTL--------------------------------- 187 (391)
T ss_pred ---cee----EEEECC---------------------------CCCE---------------------------------
Confidence 233 245431 1111
Q ss_pred ccCCCCCccccccCCCCCCCcccccccccCCCC-eEEEEECCCCcEEEEeecCC--CCeEEEEEcCCCCEEEEEeCCCcE
Q 005349 269 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVG-MVIVRDIVSKNVIAQFRAHK--SPISALCFDPSGILLVTASVQGHN 345 (701)
Q Consensus 269 ~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG-~V~IwDl~s~~~i~~~~~H~--~~Is~laFSPdG~lLaTaS~dGt~ 345 (701)
+++++..| .|||+++.+++.+.+|+.-. ..|.+|+|+||+++|+..|..+|
T Consensus 188 -------------------------lATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT- 241 (391)
T KOG2110|consen 188 -------------------------LATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET- 241 (391)
T ss_pred -------------------------EEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-
Confidence 11223334 48999999999999999554 46889999999999999999988
Q ss_pred EEEEEcCCCCC-CCC--C-ccCCC------------CceeEEEEEeccCCcccE------EEEEEc--CCCCEEEEEeCC
Q 005349 346 INIFKIIPGIL-GTS--S-ACDAG------------TSYVHLYRLQRGLTNAVI------QDISFS--DDSNWIMISSSR 401 (701)
Q Consensus 346 I~Iwdl~~~~~-~~~--s-~~~~~------------~~~~~l~~l~rG~~~a~I------~~iaFS--pDg~~lAsgS~d 401 (701)
|+||.+..... ... + ..++. ..+.......|....+.| ..++|+ +...++..++.|
T Consensus 242 VHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~d 321 (391)
T KOG2110|consen 242 VHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYD 321 (391)
T ss_pred EEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcC
Confidence 99999875421 000 0 00100 011111122222211111 234555 478899999999
Q ss_pred CcEEEEecCCC-CCceee-cCC
Q 005349 402 GTSHLFAINPL-GGSVNF-QPT 421 (701)
Q Consensus 402 gTI~Iwdl~~~-g~~~~~-~~H 421 (701)
|.+..|.+.+. ||+..+ ..|
T Consensus 322 G~~y~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 322 GHLYSYRLPPKEGGECALIKRH 343 (391)
T ss_pred CeEEEEEcCCCCCceeEEEEee
Confidence 99999999884 566543 444
No 170
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=5.9e-07 Score=100.99 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=64.4
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG--t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
.|.++|+.++.. ..+..+.....+.+|||||++|+..+.++ ..|.+||+.++ . ...+....
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g------------~---~~~Lt~~~- 374 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG------------G---VQVLTDTF- 374 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC------------C---eEEeCCCC-
Confidence 355567766543 34444444566789999999998876543 23777888765 1 12232221
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCc---EEEEecCCCCCceeecCCCC
Q 005349 380 NAVIQDISFSDDSNWIMISSSRGT---SHLFAINPLGGSVNFQPTDA 423 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~dgT---I~Iwdl~~~g~~~~~~~H~~ 423 (701)
.....+|||||++|+.++.++. +.+++++ .+....+..|.+
T Consensus 375 --~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~ 418 (429)
T PRK03629 375 --LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG 418 (429)
T ss_pred --CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCC
Confidence 2456889999999999998875 4555652 334455666543
No 171
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.95 E-value=4.2e-08 Score=100.98 Aligned_cols=90 Identities=20% Similarity=0.367 Sum_probs=67.3
Q ss_pred CCeEEEEECCC-CcEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 300 VGMVIVRDIVS-KNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 300 dG~V~IwDl~s-~~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
...|.|.|++. ..+++.|++|.+.|+.++|.| +...|+||++|-. .-|||+......+ ...-...|+.
T Consensus 265 S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~~~------~~dPilay~a--- 334 (364)
T KOG0290|consen 265 SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPREN------GEDPILAYTA--- 334 (364)
T ss_pred CceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccccC------CCCchhhhhc---
Confidence 45789999986 468999999999999999999 6789999999965 8999997652100 0000222332
Q ss_pred CCcccEEEEEEcC-CCCEEEEEeCC
Q 005349 378 LTNAVIQDISFSD-DSNWIMISSSR 401 (701)
Q Consensus 378 ~~~a~I~~iaFSp-Dg~~lAsgS~d 401 (701)
.++|..|.|++ .+.|||.+...
T Consensus 335 --~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 335 --GGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred --cceeeeeeecccCCCEEEEEecC
Confidence 24699999995 78899998764
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=3.9e-09 Score=124.18 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=78.6
Q ss_pred ccCCCCeEEEEECCCCcEEEEeecCCC--CeEEEEEcCCC-CEEEEEeCCCc--EEEEEEcCCCCCCCCCccCCCCceeE
Q 005349 296 DADNVGMVIVRDIVSKNVIAQFRAHKS--PISALCFDPSG-ILLVTASVQGH--NINIFKIIPGILGTSSACDAGTSYVH 370 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~~~i~~~~~H~~--~Is~laFSPdG-~lLaTaS~dGt--~I~Iwdl~~~~~~~~s~~~~~~~~~~ 370 (701)
++..+|.+.|||++.++++-.|..|.. .++.|+|+||+ +.|++|+.|.+ .|.+||++.-. ..
T Consensus 179 S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-------------sP 245 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-------------SP 245 (1049)
T ss_pred ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-------------Cc
Confidence 455678999999999999888887764 47889999974 57777877654 49999987540 12
Q ss_pred EEEEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCC
Q 005349 371 LYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 371 l~~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
+..+ ++|.. -|.++.|++ |.++|++++.|++|.+|+.++.
T Consensus 246 ~k~~-~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 246 LKIL-EGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred hhhh-ccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 2233 34433 399999998 5599999999999999999874
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.88 E-value=2.4e-06 Score=89.70 Aligned_cols=221 Identities=19% Similarity=0.355 Sum_probs=147.3
Q ss_pred cCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCC
Q 005349 26 RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSAN 105 (701)
Q Consensus 26 ~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~ 105 (701)
++.+.+||+.........+..|...|+.+.+.|+.. .++....
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------~~~~~~~----------------------- 175 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK--------------LLASGSS----------------------- 175 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCC--------------EEEecCC-----------------------
Confidence 557899998752345555666888888888776421 2222211
Q ss_pred CCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecC--C-EEEE-EeCCEEEEEECCCCceeE-EEecCCCccC
Q 005349 106 YHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS--R-VVAI-CQAAQVHCFDAATLEIEY-AILTNPIVMG 179 (701)
Q Consensus 106 ~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~--~-~LaV-a~~~~I~iwDl~t~~~~~-tl~t~~~~~~ 179 (701)
.++++++|++.++..+.++.. ...|..+++++ + +++. ..++.|.+||..+++... .+..+...
T Consensus 176 ---------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-- 244 (466)
T COG2319 176 ---------LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS-- 244 (466)
T ss_pred ---------CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc--
Confidence 127799999999999998886 67899999973 3 4444 578899999888666555 23332110
Q ss_pred CCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccc
Q 005349 180 HPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGY 259 (701)
Q Consensus 180 ~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~ 259 (701)
. +. .+. |. +
T Consensus 245 -----------~-~~------~~~-------------~~--------------~-------------------------- 253 (466)
T COG2319 245 -----------V-VS------SFS-------------PD--------------G-------------------------- 253 (466)
T ss_pred -----------e-eE------eEC-------------CC--------------C--------------------------
Confidence 0 00 111 00 0
Q ss_pred eecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcE-EEEeecCCCCeEEEEEcCCCCEEEE
Q 005349 260 KKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV-IAQFRAHKSPISALCFDPSGILLVT 338 (701)
Q Consensus 260 ~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~-i~~~~~H~~~Is~laFSPdG~lLaT 338 (701)
..+..+..++.+++||+..... +..+..|...|.++.|+|++..+++
T Consensus 254 --------------------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 254 --------------------------------SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred --------------------------------CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence 0111245678999999987664 5555789999999999999999999
Q ss_pred EeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe-ccCCcccEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCC
Q 005349 339 ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RGLTNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPLG 413 (701)
Q Consensus 339 aS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~-rG~~~a~I~~iaFSpDg~~lAsg-S~dgTI~Iwdl~~~g 413 (701)
++.|+. +++||+... ....... .++.. .|..++|++++..++.+ ..|+.+.+|++....
T Consensus 302 ~~~d~~-~~~~~~~~~--------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 302 GSSDGT-VRLWDLETG--------------KLLSSLTLKGHEG-PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred eeCCCc-EEEEEcCCC--------------ceEEEeeecccCC-ceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 999965 999988765 2222221 23322 48899994443566666 688999999998765
No 174
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.1e-08 Score=103.16 Aligned_cols=130 Identities=17% Similarity=0.314 Sum_probs=97.2
Q ss_pred cccccCCCCeEEEEECCCC---cEEEEeecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCc
Q 005349 293 HFPDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDP--SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 367 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~---~~i~~~~~H~~~Is~laFSP--dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~ 367 (701)
.++++..|++|+|++..+. +++.+|.+|.+||..++|-. -|++||+||.||+ +.||.-..+ ..
T Consensus 25 rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk-VIiWke~~g-~w---------- 92 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK-VIIWKEENG-RW---------- 92 (299)
T ss_pred eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce-EEEEecCCC-ch----------
Confidence 3567889999999999875 47889999999999999988 8999999999998 789987655 11
Q ss_pred eeEEEEEeccCCcccEEEEEEcC--CCCEEEEEeCCCcEEEEecCCCCCcee---ecCCCCCcccccCCCcccccccCCC
Q 005349 368 YVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVN---FQPTDANFTTKHGAMAKSGVRWPPN 442 (701)
Q Consensus 368 ~~~l~~l~rG~~~a~I~~iaFSp--Dg~~lAsgS~dgTI~Iwdl~~~g~~~~---~~~H~~~~~~~~~~~~~~~~~~~~~ 442 (701)
.++|. +..+.+.|++|+|.| -|-.||++|+||+|.|++++..|+-.+ ..+| ..-+|++ .|.+.
T Consensus 93 -~k~~e--~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH--------~~GvnsV-swapa 160 (299)
T KOG1332|consen 93 -TKAYE--HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH--------EIGVNSV-SWAPA 160 (299)
T ss_pred -hhhhh--hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc--------cccccee-eecCc
Confidence 22222 223445699999998 467899999999999999988754332 2455 3344554 55555
Q ss_pred CCCC
Q 005349 443 LGLQ 446 (701)
Q Consensus 443 s~~~ 446 (701)
+...
T Consensus 161 ~~~g 164 (299)
T KOG1332|consen 161 SAPG 164 (299)
T ss_pred CCCc
Confidence 5443
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.85 E-value=1.4e-07 Score=97.12 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=83.2
Q ss_pred cCCCCeEEEEECCCCcEEEEee-cCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~-~H~~~Is~laFSPdG~-lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
...++++..||+++.+....++ +|...|..|.|+|+-+ +||||++||. |||||.+.. ...+.++
T Consensus 189 tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~t-------------k~pv~el 254 (370)
T KOG1007|consen 189 TTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKT-------------KFPVQEL 254 (370)
T ss_pred EeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCC-------------Ccccccc
Confidence 3467899999999987766666 9999999999999855 7999999998 999999864 1334555
Q ss_pred eccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCce
Q 005349 375 QRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSV 416 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~~g~~~ 416 (701)
. +| .+.|+++.|.| ..+.|.+|++|..|.+|....-..+.
T Consensus 255 ~-~H-sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 255 P-GH-SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred C-CC-ceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 3 43 45699999999 56889999999999999886554333
No 176
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=1.9e-06 Score=96.88 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=53.7
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG--t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
.|.++|+.+++. ..+..+...+...+|||||++|+..+.++ ..|.+||+..+ . . ..+..+
T Consensus 315 ~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~------------~-~--~~lt~~-- 376 (435)
T PRK05137 315 QLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS------------G-E--RILTSG-- 376 (435)
T ss_pred eEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC------------c-e--EeccCC--
Confidence 578888876654 34444455667789999999999877543 34677776443 1 1 122222
Q ss_pred cccEEEEEEcCCCCEEEEEeCC
Q 005349 380 NAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~d 401 (701)
..+.+.+|||||++|+..+.+
T Consensus 377 -~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 377 -FLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred -CCCCCCeECCCCCEEEEEEcc
Confidence 136789999999999876654
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.81 E-value=5.4e-08 Score=103.58 Aligned_cols=117 Identities=13% Similarity=0.150 Sum_probs=88.2
Q ss_pred cccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
.+++.|.+|.||++.+++.+-++. |..-|.+++|+.||.+|+|++.|.+ |||||.+++ ..+.+-
T Consensus 148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-vRv~dpr~~--------------~~v~e~ 211 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-VRVIDPRRG--------------TVVSEG 211 (472)
T ss_pred hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce-eEEEcCCCC--------------cEeeec
Confidence 345678899999999999988888 9999999999999999999999976 999999987 333333
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeC---CCcEEEEecCCCCCceee---cCCCCCcccc
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSS---RGTSHLFAINPLGGSVNF---QPTDANFTTK 428 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~---dgTI~Iwdl~~~g~~~~~---~~H~~~~~~~ 428 (701)
.+|..++-..+-|=.+|..+-+|-+ ++.+-|||-.....+..+ .+-++.+-+|
T Consensus 212 -~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PF 270 (472)
T KOG0303|consen 212 -VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPF 270 (472)
T ss_pred -ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEee
Confidence 4555566666778889996655544 567899987655555443 4444444444
No 178
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.81 E-value=4.6e-06 Score=87.21 Aligned_cols=112 Identities=19% Similarity=0.286 Sum_probs=76.5
Q ss_pred CCCC-eEEEEECCCCcEEEEeecC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCC---CCcc-------CC
Q 005349 298 DNVG-MVIVRDIVSKNVIAQFRAH--KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT---SSAC-------DA 364 (701)
Q Consensus 298 ~~dG-~V~IwDl~s~~~i~~~~~H--~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~---~s~~-------~~ 364 (701)
+..| .|||||..+|+.+.+|+.- ...|.||+||||+.+||.+|++|| ++||.+....... ++.. -+
T Consensus 200 StkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lpky 278 (346)
T KOG2111|consen 200 STKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLPKY 278 (346)
T ss_pred ccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccchh
Confidence 3344 4899999999999999933 358999999999999999999998 8999998743211 1111 01
Q ss_pred CCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 365 GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 365 ~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
.++.+-+.+++- ......-++|-.+.+-++..+.||+-+-+.+.+.
T Consensus 279 ~~S~wS~~~f~l--~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 279 FSSEWSFAKFQL--PQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred cccceeEEEEEc--cCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence 112222223321 1123556889888777777788899877666544
No 179
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.80 E-value=1.8e-07 Score=105.40 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=76.2
Q ss_pred CCeEEEEECC--CCcEEEEeecCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEEEcCCCCCCCC-CccC-----C-CCc
Q 005349 300 VGMVIVRDIV--SKNVIAQFRAHKSPISALCFDPSGI---LLVTASVQGHNINIFKIIPGILGTS-SACD-----A-GTS 367 (701)
Q Consensus 300 dG~V~IwDl~--s~~~i~~~~~H~~~Is~laFSPdG~---lLaTaS~dGt~I~Iwdl~~~~~~~~-s~~~-----~-~~~ 367 (701)
+-.|.|+.-. +.+.+..+++|+..|.+|+|..-|. +|||+|.|. .||||.+..+....+ .... . ...
T Consensus 168 ~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~-yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~ 246 (764)
T KOG1063|consen 168 KFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDR-YIRIWRIVLGDDEDSNEREDSLTTLSNLPV 246 (764)
T ss_pred ceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCce-EEEEEEEEecCCccccccccccccccCCce
Confidence 3445555433 3457789999999999999998655 899999996 499999876521000 0000 0 011
Q ss_pred eeEEE---------EEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 005349 368 YVHLY---------RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (701)
Q Consensus 368 ~~~l~---------~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~ 414 (701)
...+. .+.-||.. .|+++-|+|++..|.++|.|.|+.||.-....|
T Consensus 247 f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tG 301 (764)
T KOG1063|consen 247 FMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTG 301 (764)
T ss_pred eeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccc
Confidence 11111 12246653 499999999999999999999999998766533
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.80 E-value=2.1e-08 Score=106.58 Aligned_cols=114 Identities=12% Similarity=0.209 Sum_probs=93.8
Q ss_pred cccccCCCCeEEEEECCCC-------cEEEEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCC
Q 005349 293 HFPDADNVGMVIVRDIVSK-------NVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDA 364 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~-------~~i~~~~~H~~~Is~laFSPd-G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~ 364 (701)
.+++++.|.+|+||++..+ +++..|.+|+..|.-|+|+|. -..|+|++.|.+ |.||++.++
T Consensus 96 vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~-v~iWnv~tg---------- 164 (472)
T KOG0303|consen 96 VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT-VSIWNVGTG---------- 164 (472)
T ss_pred eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce-EEEEeccCC----------
Confidence 3567889999999998754 468899999999999999996 568999999965 999999998
Q ss_pred CCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCC
Q 005349 365 GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (701)
Q Consensus 365 ~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~ 424 (701)
+.+.++. ++..|++++|+.||.+|++++.|..|+|||..+..-...-.+|.+.
T Consensus 165 ----eali~l~---hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 165 ----EALITLD---HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred ----ceeeecC---CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 5666764 4556999999999999999999999999998764333233467654
No 181
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.80 E-value=5.5e-08 Score=97.70 Aligned_cols=92 Identities=15% Similarity=0.355 Sum_probs=72.9
Q ss_pred cCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ---GHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~d---Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
+..+..|.|||+. .+.+..|. ..+++.|+|||+|++||+|+.+ |. +.+||+... ..+.+
T Consensus 79 g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~--------------~~i~~ 140 (194)
T PF08662_consen 79 GSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKK--------------KKIST 140 (194)
T ss_pred ccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCC--------------EEeec
Confidence 3455689999997 56666664 4688999999999999999854 44 899999875 55555
Q ss_pred EeccCCcccEEEEEEcCCCCEEEEEeC------CCcEEEEecC
Q 005349 374 LQRGLTNAVIQDISFSDDSNWIMISSS------RGTSHLFAIN 410 (701)
Q Consensus 374 l~rG~~~a~I~~iaFSpDg~~lAsgS~------dgTI~Iwdl~ 410 (701)
+.. ..+.+++|||||++|++++. |..++||++.
T Consensus 141 ~~~----~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 141 FEH----SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccc----CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 532 23789999999999999875 7889999985
No 182
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=8.4e-07 Score=102.56 Aligned_cols=107 Identities=20% Similarity=0.307 Sum_probs=81.3
Q ss_pred ccccCCCCeEEEEE-CC-CC--cEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCcee
Q 005349 294 FPDADNVGMVIVRD-IV-SK--NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 369 (701)
Q Consensus 294 ~~~~~~dG~V~IwD-l~-s~--~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~ 369 (701)
++.+..||.|.||. +. ++ .....|.=|..+|++|+||+||.+|.||+..|- +-+|.+.++ ...
T Consensus 220 ~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~------------~kq 286 (792)
T KOG1963|consen 220 LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETG------------KKQ 286 (792)
T ss_pred EEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceE-EEEEeecCC------------Ccc
Confidence 34567889999995 33 12 234567778889999999999999999999985 899999886 112
Q ss_pred EEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 370 ~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
. |.| -.+.|..+.+|||+.+.+....|..||+-...+-....++
T Consensus 287 f---LPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tI 330 (792)
T KOG1963|consen 287 F---LPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTI 330 (792)
T ss_pred c---ccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhc
Confidence 2 222 1356999999999999999999999999987554333333
No 183
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.79 E-value=5.2e-08 Score=108.34 Aligned_cols=103 Identities=13% Similarity=0.251 Sum_probs=76.8
Q ss_pred cccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
+.+..|-+|+|||+.+.+.-..|.+|+..|..++|||||+++||...||+ |+||+-+... ..+|+-
T Consensus 694 a~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e-------------~pv~Eg 759 (1012)
T KOG1445|consen 694 AVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSRE-------------QPVYEG 759 (1012)
T ss_pred hhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCC-------------CccccC
Confidence 34567889999999999999999999999999999999999999999998 8999877651 122221
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeCCC----cEEEEecCCC
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSSRG----TSHLFAINPL 412 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~dg----TI~Iwdl~~~ 412 (701)
.|....+--.|.|.-||+++++.+.|. -|.+|+..+.
T Consensus 760 -~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 760 -KGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred -CCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 111111122456888999998877664 3666665543
No 184
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.78 E-value=4.5e-08 Score=105.48 Aligned_cols=117 Identities=15% Similarity=0.280 Sum_probs=94.8
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
.+++++.|.+|++||+.++++...+..|...|.+|+|.| ....|++||.||+ ++++|.+.. ..+ ..-
T Consensus 258 VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~-V~l~D~R~~--~~s---------~~~ 325 (463)
T KOG0270|consen 258 VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT-VALKDCRDP--SNS---------GKE 325 (463)
T ss_pred eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccce-EEeeeccCc--ccc---------Cce
Confidence 456788999999999999999999999999999999999 5889999999998 899999852 110 122
Q ss_pred EEEeccCCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCCCce-eecCCCCCcc
Q 005349 372 YRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLGGSV-NFQPTDANFT 426 (701)
Q Consensus 372 ~~l~rG~~~a~I~~iaFSpDg~-~lAsgS~dgTI~Iwdl~~~g~~~-~~~~H~~~~~ 426 (701)
+++. +.|..++|.|.+. .+.++++||+++=||+...+.++ ++++|.+.++
T Consensus 326 wk~~-----g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS 377 (463)
T KOG0270|consen 326 WKFD-----GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS 377 (463)
T ss_pred EEec-----cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcc
Confidence 4442 4599999998654 56678899999999999887555 6789976554
No 185
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=4.1e-07 Score=96.98 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=90.0
Q ss_pred cccccCCCCeEEEEECCCC-cEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 293 HFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~-~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
+|+++..-+.|++||...+ +++.+|.--..+|+++...|+|+++.+|...|. +..||++.+ .++
T Consensus 218 ~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~--------------kl~ 282 (412)
T KOG3881|consen 218 KFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGG--------------KLL 282 (412)
T ss_pred eEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCc--------------eee
Confidence 4555566689999999875 688999888899999999999999999999997 899999987 454
Q ss_pred EEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCc
Q 005349 372 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 372 ~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
-....|.+. .|.+|.-.|..++||+++.|+-++|||+.+.+-.
T Consensus 283 g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 283 GCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 444456554 4999999999999999999999999999885443
No 186
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.76 E-value=1.6e-08 Score=113.70 Aligned_cols=99 Identities=15% Similarity=0.306 Sum_probs=79.8
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCc
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~ 380 (701)
..|+||...+-..+..++.|.-.|+.|+|||||++|+++|.|.+ +.+|..+..... ..-+..-..| .
T Consensus 552 AvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt-~sl~~~~~~~~~-----------e~~fa~~k~H-t 618 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT-VSLYEVQEDIKD-----------EFRFACLKAH-T 618 (764)
T ss_pred eEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce-EEeeeeecccch-----------hhhhcccccc-c
Confidence 47999999998888899999999999999999999999999976 899988654100 0001111222 2
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 381 a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
..|+++.|+||++++||+|.|.+|+||.....
T Consensus 619 RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 619 RIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred eEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 24999999999999999999999999999764
No 187
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=2.9e-07 Score=107.69 Aligned_cols=109 Identities=13% Similarity=0.152 Sum_probs=76.3
Q ss_pred cccccCCCCeEEEEECCCCcEE--EEeecCC--C-CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCc
Q 005349 293 HFPDADNVGMVIVRDIVSKNVI--AQFRAHK--S-PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 367 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i--~~~~~H~--~-~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~ 367 (701)
.++++.++|.|++||++..... -++..|. + .+++|..+++...+|+|+. + .|+||++.-..-..
T Consensus 1271 elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~G~~l~~--------- 1339 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLSGEQLNI--------- 1339 (1387)
T ss_pred ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecChhhhcc---------
Confidence 4556788999999999874222 2333554 3 5999999999999999998 4 49999986431000
Q ss_pred eeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 005349 368 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 368 ~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g 413 (701)
..-+...-|.....+.|++|+|.--.||+|+.|.+|-||...+.+
T Consensus 1340 -~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1340 -IKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred -cccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 000011112222337899999999999999999999999887653
No 188
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=2.4e-06 Score=96.10 Aligned_cols=89 Identities=11% Similarity=0.163 Sum_probs=55.6
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG--t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
.|.++|+.+++.. .+.-+......++|||||++|+..+.++ ..|.+||+.++ .. ..+..+.
T Consensus 317 ~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g--------------~~-~~Lt~~~- 379 (433)
T PRK04922 317 QIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG--------------SV-RTLTPGS- 379 (433)
T ss_pred eEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC--------------Ce-EECCCCC-
Confidence 4666777666532 2222333455689999999998876543 24889998765 11 1332221
Q ss_pred cccEEEEEEcCCCCEEEEEeCC-Cc--EEEEec
Q 005349 380 NAVIQDISFSDDSNWIMISSSR-GT--SHLFAI 409 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~d-gT--I~Iwdl 409 (701)
.....+|||||++|+..+.+ +. +.++++
T Consensus 380 --~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 380 --LDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred --CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 24567999999998887764 34 455555
No 189
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=9e-06 Score=91.41 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=47.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCc--EEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCC
Q 005349 324 ISALCFDPSGILLVTASVQGH--NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 324 Is~laFSPdG~lLaTaS~dGt--~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d 401 (701)
....+|||||++|+.++.++. .|.+||+.++ . ...+..+ ......+|+|||++|+.++.+
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g--------------~-~~~lt~~---~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATG--------------Q-VTALTDT---TRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCC--------------C-eEEccCC---CCccCceECCCCCEEEEEEec
Confidence 345789999999998776542 4889998765 1 1122222 124678999999999988765
Q ss_pred C-cEEEEecCCCC
Q 005349 402 G-TSHLFAINPLG 413 (701)
Q Consensus 402 g-TI~Iwdl~~~g 413 (701)
+ .-.++-+...|
T Consensus 392 ~g~~~l~~~~~~g 404 (427)
T PRK02889 392 GGRSVLAAVSSDG 404 (427)
T ss_pred CCCEEEEEEECCC
Confidence 4 33444444333
No 190
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.70 E-value=4.5e-07 Score=93.50 Aligned_cols=107 Identities=15% Similarity=0.227 Sum_probs=82.4
Q ss_pred cccccCCCCeEEEEECCCCcEEEEee---cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCce
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFR---AHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 368 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~---~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~ 368 (701)
.|++.+.||.||++|++...--..+. ....+...|++++ |-.++||--.|...|.|-|++..+
T Consensus 211 ~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~------------- 277 (364)
T KOG0290|consen 211 VFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC------------- 277 (364)
T ss_pred eEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC-------------
Confidence 45556789999999999865333332 3246889999999 678999988888889999998652
Q ss_pred eEEEEEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCC
Q 005349 369 VHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGG 414 (701)
Q Consensus 369 ~~l~~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~~g~ 414 (701)
..+.+|+ +| .+.|..|+|.| .+..|+++++|--+-|||+.....
T Consensus 278 tpva~L~-~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 278 TPVARLR-NH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred cceehhh-cC-cccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 3455664 44 46799999999 567899999999999999986543
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=3.9e-07 Score=105.26 Aligned_cols=104 Identities=13% Similarity=0.194 Sum_probs=76.3
Q ss_pred CCCeEEEEECCCCcEE-E---EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 299 NVGMVIVRDIVSKNVI-A---QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i-~---~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
.+..+.+|+..++... . .-..|+.+++|.+|||+++++|+|..||+ |.||.-... +.....-..|
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr-I~vw~d~~~----------~~~~~t~t~l 247 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR-ILVWRDFGS----------SDDSETCTLL 247 (792)
T ss_pred EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc-EEEEecccc----------ccccccceEE
Confidence 4456888888875411 1 11267788999999999999999999999 899974321 0001111234
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCc
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
++. .+.|.+++||+||.+|.+|+..+-+-+|.+.+.+.+
T Consensus 248 HWH--~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq 286 (792)
T KOG1963|consen 248 HWH--HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ 286 (792)
T ss_pred Eec--ccccceeEEecCCceEeecccceEEEEEeecCCCcc
Confidence 443 346999999999999999999999999999887643
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=1.3e-06 Score=88.29 Aligned_cols=103 Identities=13% Similarity=0.310 Sum_probs=77.3
Q ss_pred cCCCCeEEEEECCCCcEEEEeecCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE-
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF-DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL- 374 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laF-SPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l- 374 (701)
+..|+.++-||+++|+...++++|+..|.++.- +.+|+ +.||+.||+ +||||+++. +|...+
T Consensus 132 AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGt-vRvWd~kt~--------------k~v~~ie 195 (325)
T KOG0649|consen 132 AGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGT-VRVWDTKTQ--------------KHVSMIE 195 (325)
T ss_pred ecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-eeecCCCcc-EEEEecccc--------------ceeEEec
Confidence 447899999999999999999999999999998 44554 779999998 899999987 333322
Q ss_pred -------eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 375 -------QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 375 -------~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
.|-+....|-+++-+. .||+.|.. ..+-+|.+........|
T Consensus 196 ~yk~~~~lRp~~g~wigala~~e--dWlvCGgG-p~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 196 PYKNPNLLRPDWGKWIGALAVNE--DWLVCGGG-PKLSLWHLRSSESTCVF 243 (325)
T ss_pred cccChhhcCcccCceeEEEeccC--ceEEecCC-CceeEEeccCCCceEEE
Confidence 2333333366666554 59988764 46899999876655544
No 193
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=3.7e-08 Score=105.64 Aligned_cols=129 Identities=17% Similarity=0.262 Sum_probs=92.9
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCC--CCC--C--------
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL--GTS--S-------- 360 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~--~~~--s-------- 360 (701)
.++++..||++|||+..+...+..+.+|...|.+|.|||||++||+-+.| . .+||++.++.. ..+ +
T Consensus 158 ~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~-~~VW~~~~g~~~a~~t~~~k~~~~~~c 235 (398)
T KOG0771|consen 158 KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-S-ARVWSVNTGAALARKTPFSKDEMFSSC 235 (398)
T ss_pred EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-c-eEEEEeccCchhhhcCCcccchhhhhc
Confidence 56778899999999999988888999999999999999999999999999 3 79999998721 000 0
Q ss_pred ---ccC------------CCCcee-EEEEEecc---------CC-cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 005349 361 ---ACD------------AGTSYV-HLYRLQRG---------LT-NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (701)
Q Consensus 361 ---~~~------------~~~~~~-~l~~l~rG---------~~-~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~ 414 (701)
... ...... +-..+.++ .. ...|.+++.|+||+++|.|+.||.|-|++..+-..
T Consensus 236 RF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~ 315 (398)
T KOG0771|consen 236 RFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR 315 (398)
T ss_pred eecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee
Confidence 000 000000 00111111 00 11389999999999999999999999999987654
Q ss_pred ceee-cCCCC
Q 005349 415 SVNF-QPTDA 423 (701)
Q Consensus 415 ~~~~-~~H~~ 423 (701)
..-+ +.|..
T Consensus 316 ~~~vk~aH~~ 325 (398)
T KOG0771|consen 316 LQYVKEAHLG 325 (398)
T ss_pred eEeehhhhee
Confidence 4433 56754
No 194
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=6.6e-08 Score=106.84 Aligned_cols=112 Identities=21% Similarity=0.306 Sum_probs=87.1
Q ss_pred cccccCCCCeEEEEECCC--------CcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCC
Q 005349 293 HFPDADNVGMVIVRDIVS--------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDA 364 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s--------~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~ 364 (701)
.+++++.+|++.+|.++. .+++.+|++|.+||.|++.+++|..+.||+.||+ |+.|.+.+... +....+.
T Consensus 308 ~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~~p~n~d-p~ds~dp 385 (577)
T KOG0642|consen 308 VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWNLPPNQD-PDDSYDP 385 (577)
T ss_pred eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeeccCCCCC-cccccCc
Confidence 567789999999999932 2588999999999999999999999999999998 99998874311 1000000
Q ss_pred CCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 365 GTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 365 ~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
..+-...-|++.+ |+.+++|.....|+++|.|||+++|....
T Consensus 386 ----~vl~~~l~Ghtda-vw~l~~s~~~~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 386 ----SVLSGTLLGHTDA-VWLLALSSTKDRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred ----chhccceeccccc-eeeeeecccccceeeecCCceEEeeccCC
Confidence 1111222477654 99999999999999999999999999854
No 195
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.67 E-value=7e-08 Score=110.28 Aligned_cols=99 Identities=20% Similarity=0.303 Sum_probs=81.2
Q ss_pred ccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
++-.+-.+.+|++.++..+..+.+|..++..|.|+| +-....+|+.||. +.|||+-.+ ...+.|.
T Consensus 370 ~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs-t~iwdi~eg------------~pik~y~- 435 (1113)
T KOG0644|consen 370 TARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS-TIIWDIWEG------------IPIKHYF- 435 (1113)
T ss_pred eeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc-eEeeecccC------------Ccceeee-
Confidence 345667889999999999999999999999999999 6667778999998 689999876 1133344
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
.| ..++.+.+||+||+.++...+.|-+.|+....
T Consensus 436 -~g--h~kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 436 -IG--HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred -cc--cceeeccccCCCCceEecCCCCCceEEeccCC
Confidence 34 24588999999999999999999999987643
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=2.7e-07 Score=99.18 Aligned_cols=74 Identities=19% Similarity=0.320 Sum_probs=64.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCC
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d 401 (701)
..|++|+.|+||+++|-|+.||. |-|++.... +++|-.++.|- .-|+++.|+||.+++++.|.|
T Consensus 282 ~siSsl~VS~dGkf~AlGT~dGs-Vai~~~~~l--------------q~~~~vk~aH~-~~VT~ltF~Pdsr~~~svSs~ 345 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALGTMDGS-VAIYDAKSL--------------QRLQYVKEAHL-GFVTGLTFSPDSRYLASVSSD 345 (398)
T ss_pred CcceeEEEcCCCcEEEEeccCCc-EEEEEecee--------------eeeEeehhhhe-eeeeeEEEcCCcCcccccccC
Confidence 58999999999999999999997 899998865 56666655543 359999999999999999999
Q ss_pred CcEEEEecCC
Q 005349 402 GTSHLFAINP 411 (701)
Q Consensus 402 gTI~Iwdl~~ 411 (701)
.+++|..+.-
T Consensus 346 ~~~~v~~l~v 355 (398)
T KOG0771|consen 346 NEAAVTKLAV 355 (398)
T ss_pred CceeEEEEee
Confidence 9999998863
No 197
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.61 E-value=6.2e-08 Score=106.44 Aligned_cols=92 Identities=17% Similarity=0.290 Sum_probs=67.4
Q ss_pred EEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCC
Q 005349 313 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 392 (701)
Q Consensus 313 ~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg 392 (701)
++....--.++|+..+|||||++||+.|.||. +||||..+. +|.-+-+-. -+-..|+||||||
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~---------------eLlg~mkSY-FGGLLCvcWSPDG 344 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQ---------------ELLGVMKSY-FGGLLCVCWSPDG 344 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHH---------------HHHHHHHhh-ccceEEEEEcCCc
Confidence 44444434568999999999999999999998 899998764 221111111 1238899999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCCceeecCC
Q 005349 393 NWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (701)
Q Consensus 393 ~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H 421 (701)
+||++|+.|.-|.||.+....-...=++|
T Consensus 345 KyIvtGGEDDLVtVwSf~erRVVARGqGH 373 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTVWSFEERRVVARGQGH 373 (636)
T ss_pred cEEEecCCcceEEEEEeccceEEEecccc
Confidence 99999999999999999764322222555
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=1.4e-06 Score=97.82 Aligned_cols=89 Identities=10% Similarity=0.126 Sum_probs=60.6
Q ss_pred EEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcc
Q 005349 303 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 381 (701)
Q Consensus 303 V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS-~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a 381 (701)
|.+||+.++.. ..+..|...+.+.+|+|||+.|+.++ .+|. .+||++.... .. .. .+ +.. .
T Consensus 274 Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~----------~~-~~--~l--~~~-~ 335 (429)
T PRK01742 274 IYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSASG----------GG-AS--LV--GGR-G 335 (429)
T ss_pred EEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECCC----------CC-eE--Ee--cCC-C
Confidence 55667776654 55667777888999999999877665 4566 7999876430 01 11 11 111 1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 382 VIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 382 ~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
.+.+|||||++|+.++.++ +.+||+.+.
T Consensus 336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g 363 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDN-VVKQDLTSG 363 (429)
T ss_pred --CCccCCCCCCEEEEEcCCC-EEEEECCCC
Confidence 4578999999999988765 555888654
No 199
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.60 E-value=9.7e-07 Score=96.35 Aligned_cols=207 Identities=14% Similarity=0.266 Sum_probs=133.7
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+-++..|..+-++|||+.. .-+.+.+..|...|.++-+-- .| ..||-+.+|
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~--------~D------eyiAsvs~g-------------- 142 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNN--------TD------EYIASVSDG-------------- 142 (673)
T ss_pred eeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecC--------Cc------ceeEEeccC--------------
Confidence 4455667777799999983 556666667888888876521 22 246655543
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCC--CEEEEEec--C-CEEEE-EeCCEEEEEECCCCceeEEE
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS--PIYSVRCS--S-RVVAI-CQAAQVHCFDAATLEIEYAI 171 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s--~V~sV~~s--~-~~LaV-a~~~~I~iwDl~t~~~~~tl 171 (701)
+-|.|-.++|+..-.+|..++ .|+-++++ + .+|.+ +.++.|.+||...+..++..
T Consensus 143 -------------------Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 143 -------------------GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred -------------------CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence 347788888888777777652 45577775 3 44554 55789999999887655443
Q ss_pred e-cCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhce
Q 005349 172 L-TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (701)
Q Consensus 172 ~-t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~g 250 (701)
. .|.-| +. | ++ |+ | ++.
T Consensus 204 ~~~HsAP--~~---g-------ic-------fs-------------p-------------sne----------------- 221 (673)
T KOG4378|consen 204 SEAHSAP--CR---G-------IC-------FS-------------P-------------SNE----------------- 221 (673)
T ss_pred hhhccCC--cC---c-------ce-------ec-------------C-------------Ccc-----------------
Confidence 2 22111 00 0 11 11 0 000
Q ss_pred eEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEc
Q 005349 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD 330 (701)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFS 330 (701)
..+++-+.|..|.+||+.+.+....+.. ..|.++|+|+
T Consensus 222 -----------------------------------------~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~ 259 (673)
T KOG4378|consen 222 -----------------------------------------ALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFS 259 (673)
T ss_pred -----------------------------------------ceEEEecccceEEEeecccccccceeee-cCCcceeeec
Confidence 0123345688999999998877666653 4599999999
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCC
Q 005349 331 PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 392 (701)
Q Consensus 331 PdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg 392 (701)
++|++|+.|+..|. |.-||++... ..+..+ ..| .+.|++|+|-|--
T Consensus 260 ~~G~~L~aG~s~G~-~i~YD~R~~k-------------~Pv~v~-sah-~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 260 ECGTYLCAGNSKGE-LIAYDMRSTK-------------APVAVR-SAH-DASVTRVAFQPSP 305 (673)
T ss_pred CCceEEEeecCCce-EEEEecccCC-------------CCceEe-eec-ccceeEEEeeecc
Confidence 99999999999998 7899997641 122222 223 3349999997754
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=3.8e-06 Score=98.65 Aligned_cols=105 Identities=17% Similarity=0.247 Sum_probs=80.1
Q ss_pred cccccCCCCeEEEEECCCC---cEEEEeecCCCC--eEEEEEcCCCCE-EEEEeCCCcEEEEEEcCCCCCCCCCccCCCC
Q 005349 293 HFPDADNVGMVIVRDIVSK---NVIAQFRAHKSP--ISALCFDPSGIL-LVTASVQGHNINIFKIIPGILGTSSACDAGT 366 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~---~~i~~~~~H~~~--Is~laFSPdG~l-LaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~ 366 (701)
.++.+-.||.|++||.+.- ..+...+.|+.. |..+.|.+.|-- |++||.+|. |++||++.....+
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~-------- 1293 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKET-------- 1293 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccc--------
Confidence 4566778999999998753 467888999987 999999998876 999999997 9999998631100
Q ss_pred ceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 367 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 367 ~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
-....+..+.|. ..+++..+++...+|+|+. +.|+||++.
T Consensus 1294 ~~~iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred cceeeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 001111112242 3778999999999999999 999999985
No 201
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.55 E-value=1.3e-06 Score=96.16 Aligned_cols=82 Identities=15% Similarity=0.094 Sum_probs=62.7
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
.+++++.|-..+|||-. |+.+-.-.+|..||++++|+|| ++++.+|.. + .| +...
T Consensus 200 lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t-~R---~~~p------------------ 254 (737)
T KOG1524|consen 200 IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-T-AR---FSSP------------------ 254 (737)
T ss_pred ceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-e-ee---ecCC------------------
Confidence 34567788999999976 4566666799999999999999 888888754 3 44 1111
Q ss_pred EEeccCCcccEEEEEEcCCCCEEEEEeCCCcEE
Q 005349 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSH 405 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~ 405 (701)
....|..++||+||..++.|+..|-+.
T Consensus 255 ------~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 255 ------RVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred ------CccceEEEEEcCCCceeeccccCceEE
Confidence 112489999999999999999988653
No 202
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=7.5e-07 Score=93.64 Aligned_cols=106 Identities=17% Similarity=0.248 Sum_probs=78.0
Q ss_pred ccCCCCeEEEEECCCCcEEEEee--cCC-CCeEEEEEcCCCCEEEEEeCCC---cEEEEEEcCCCCCCCCCccCCCCcee
Q 005349 296 DADNVGMVIVRDIVSKNVIAQFR--AHK-SPISALCFDPSGILLVTASVQG---HNINIFKIIPGILGTSSACDAGTSYV 369 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~~~i~~~~--~H~-~~Is~laFSPdG~lLaTaS~dG---t~I~Iwdl~~~~~~~~s~~~~~~~~~ 369 (701)
++..||+|++||+++...++.+. +|. .+..|++.+-.+.+++++...- -.+.+||++... .
T Consensus 89 s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q-------------q 155 (376)
T KOG1188|consen 89 SCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ-------------Q 155 (376)
T ss_pred EeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc-------------c
Confidence 45679999999999987665554 665 5777777777899999886421 238899998751 1
Q ss_pred EEEEEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCc
Q 005349 370 HLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 370 ~l~~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
.+..+... +...|++|+|.| |-+.|++||.||-|-|||++...++
T Consensus 156 ~l~~~~eS-H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 156 LLRQLNES-HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred hhhhhhhh-ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 12222222 334699999999 8899999999999999999866443
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.50 E-value=9.2e-07 Score=97.47 Aligned_cols=61 Identities=11% Similarity=0.324 Sum_probs=55.1
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~ 354 (701)
+++.-.+||.+||+|+.+.+++..++.--+...|++|||||+|+|||++|. .+.||.+...
T Consensus 304 ~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~er 364 (636)
T KOG2394|consen 304 YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFEER 364 (636)
T ss_pred eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEeccc
Confidence 566678999999999999999888888888999999999999999999995 6999998764
No 204
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=1.5e-05 Score=89.78 Aligned_cols=92 Identities=20% Similarity=0.240 Sum_probs=61.5
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEE--EcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIF--KIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~-dGt~I~Iw--dl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
..|.+||+.+++. ..+..|.......+|+|||+.|+.++. +|. ..|| |+..+ ..+.+ .+ .+
T Consensus 272 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~-~~iy~~dl~~g------------~~~~l-t~-~g 335 (433)
T PRK04922 272 PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGR-PQIYRVAASGG------------SAERL-TF-QG 335 (433)
T ss_pred ceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCC-ceEEEEECCCC------------CeEEe-ec-CC
Confidence 4699999988864 556666666677899999999988775 443 3455 54433 11222 22 12
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCC---cEEEEecCC
Q 005349 378 LTNAVIQDISFSDDSNWIMISSSRG---TSHLFAINP 411 (701)
Q Consensus 378 ~~~a~I~~iaFSpDg~~lAsgS~dg---TI~Iwdl~~ 411 (701)
. .....+|||||++|+..+.++ .|.+|++..
T Consensus 336 ~---~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 336 N---YNARASVSPDGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred C---CccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence 1 244689999999999876543 588888754
No 205
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.47 E-value=8.3e-06 Score=81.97 Aligned_cols=50 Identities=22% Similarity=0.352 Sum_probs=41.1
Q ss_pred CCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEEcC
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV------QGHNINIFKII 352 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~------dGt~I~Iwdl~ 352 (701)
.|.|.+||..+.+.+..++.. .++.++|||||++|+|+.. |.. ++||+..
T Consensus 124 ~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng-~~Iw~~~ 179 (194)
T PF08662_consen 124 NGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNG-FKIWSFQ 179 (194)
T ss_pred CcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceecccc-EEEEEec
Confidence 478999999998888777543 4789999999999999985 433 8999874
No 206
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.46 E-value=3.8e-07 Score=66.62 Aligned_cols=38 Identities=29% Similarity=0.680 Sum_probs=36.1
Q ss_pred cEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 005349 312 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 350 (701)
Q Consensus 312 ~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwd 350 (701)
+++.+|++|.++|.+|+|+|++.+|+|++.|++ |+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 578999999999999999999999999999987 99997
No 207
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.46 E-value=8.3e-05 Score=82.56 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=56.4
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCc--EEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH--NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt--~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
.|.++|+.+++. ..+..+...+..++|+|||++|+.++.++. .|.+||+.++ .. ..+..+
T Consensus 303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~--------------~~-~~l~~~-- 364 (417)
T TIGR02800 303 QIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG--------------GE-RVLTDT-- 364 (417)
T ss_pred eEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC--------------Ce-EEccCC--
Confidence 577788877654 344445566778899999999999887651 3677777654 11 122111
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcE
Q 005349 380 NAVIQDISFSDDSNWIMISSSRGTS 404 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~dgTI 404 (701)
......+|+|||++|+..+.++..
T Consensus 365 -~~~~~p~~spdg~~l~~~~~~~~~ 388 (417)
T TIGR02800 365 -GLDESPSFAPNGRMILYATTRGGR 388 (417)
T ss_pred -CCCCCceECCCCCEEEEEEeCCCc
Confidence 123457899999999988887643
No 208
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.45 E-value=0.00057 Score=74.78 Aligned_cols=101 Identities=15% Similarity=0.170 Sum_probs=70.1
Q ss_pred CeEEEEECCC-----CcEEEEeec-------CCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEEEcCCCCCCCC
Q 005349 301 GMVIVRDIVS-----KNVIAQFRA-------HKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTS 359 (701)
Q Consensus 301 G~V~IwDl~s-----~~~i~~~~~-------H~~~Is~laFSPdG~lLaTaS~---------dGt~I~Iwdl~~~~~~~~ 359 (701)
|.|.+.|+.. .+.+..+.. ....+.-++|+|||+.|..+.. .++.|-++|..++
T Consensus 215 G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~----- 289 (352)
T TIGR02658 215 GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG----- 289 (352)
T ss_pred CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC-----
Confidence 9999999644 333333321 1233445999999998887531 1245889998877
Q ss_pred CccCCCCceeEEEEEeccCCcccEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCCCCceee
Q 005349 360 SACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISS-SRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 360 s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~-~lAsgS-~dgTI~Iwdl~~~g~~~~~ 418 (701)
+.+.++.-|. .+..|+||||++ +|.+.+ .+++|.|+|..+.....++
T Consensus 290 ---------kvi~~i~vG~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 290 ---------KRLRKIELGH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ---------eEEEEEeCCC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 6666665443 588999999999 887776 5889999999876544444
No 209
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=3.8e-05 Score=86.48 Aligned_cols=92 Identities=21% Similarity=0.244 Sum_probs=60.5
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEc--CCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI--IPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl--~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
.|.+||+.+++.. .+..+...+...+|+|||+.|+.++.++...+||.+ ..+ ....+ .. .+
T Consensus 268 ~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g------------~~~~l-t~-~~-- 330 (429)
T PRK03629 268 NLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG------------APQRI-TW-EG-- 330 (429)
T ss_pred EEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC------------CeEEe-ec-CC--
Confidence 5889999888654 444445577889999999999887765433566654 332 11222 11 11
Q ss_pred cccEEEEEEcCCCCEEEEEeCCC---cEEEEecCC
Q 005349 380 NAVIQDISFSDDSNWIMISSSRG---TSHLFAINP 411 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~dg---TI~Iwdl~~ 411 (701)
....+.+|||||++|+..+.++ .|.+||+..
T Consensus 331 -~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 331 -SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred -CCccCEEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 2256789999999998876543 366677754
No 210
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.40 E-value=0.0003 Score=78.89 Aligned_cols=94 Identities=12% Similarity=0.094 Sum_probs=54.9
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG--t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
.|.++|+.+++... +..........+|||||++|+..+.++ ..|.+||+.++ ..+. +..+.
T Consensus 312 ~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg------------~~~~---lt~~~- 374 (430)
T PRK00178 312 QIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG------------SVRI---LTDTS- 374 (430)
T ss_pred eEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC------------CEEE---ccCCC-
Confidence 56777777765432 221122334578999999998877543 23677787765 1122 21111
Q ss_pred cccEEEEEEcCCCCEEEEEeCC-CcEEEEecCCCCC
Q 005349 380 NAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGG 414 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~d-gTI~Iwdl~~~g~ 414 (701)
.....+|||||++|+.++.+ |.-+||-+...|.
T Consensus 375 --~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 375 --LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred --CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 12356899999999887764 4444554443343
No 211
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.37 E-value=0.0011 Score=72.57 Aligned_cols=84 Identities=18% Similarity=0.390 Sum_probs=60.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec-cCCcccEEEEEEcCCCCEEEEEe-C
Q 005349 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR-GLTNAVIQDISFSDDSNWIMISS-S 400 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r-G~~~a~I~~iaFSpDg~~lAsgS-~ 400 (701)
....|+++|||++|..+......|-+|++... . +....+..+.- |. .-..++|+|||++|+++. .
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-~---------g~l~~~~~~~~~G~---~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPA-T---------GTLTLVQTVPTGGK---FPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-T---------TTEEEEEEEEESSS---SEEEEEE-TTSSEEEEEETT
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecC-C---------CceEEEEEEeCCCC---CccEEEEeCCCCEEEEEecC
Confidence 57889999999999988877777999999532 0 12233333332 22 268999999999999887 5
Q ss_pred CCcEEEEecCCCCCceeec
Q 005349 401 RGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 401 dgTI~Iwdl~~~g~~~~~~ 419 (701)
+++|.+|+++...+.....
T Consensus 313 s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 313 SNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TTEEEEEEEETTTTEEEEE
T ss_pred CCeEEEEEEeCCCCcEEEe
Confidence 6799999998766666553
No 212
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.37 E-value=6.9e-05 Score=84.39 Aligned_cols=91 Identities=13% Similarity=0.186 Sum_probs=60.3
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCC-Cc-EEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~d-Gt-~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
..|.+||+.+++. ..+..|.......+|+|||+.|+.++.. |. .|.++|+..+ ..+ .+..+
T Consensus 270 ~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~------------~~~---~lt~~- 332 (435)
T PRK05137 270 TDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS------------NPR---RISFG- 332 (435)
T ss_pred ceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC------------CeE---EeecC-
Confidence 4588889988765 5566666667789999999999887743 32 3666676543 112 22211
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCC---cEEEEec
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRG---TSHLFAI 409 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dg---TI~Iwdl 409 (701)
...+...+|||||++|+..+.++ .|.+|++
T Consensus 333 -~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 333 -GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred -CCcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence 12356788999999999877543 3555665
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=2.5e-05 Score=82.93 Aligned_cols=102 Identities=18% Similarity=0.287 Sum_probs=73.8
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
.+..|+|||..++..+....---+.++-|.|||||.+|..+.-|+. +++|+.... ++ ...+.+ |
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav-frlw~e~q~--wt----------~erw~l--g- 279 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV-FRLWQENQS--WT----------KERWIL--G- 279 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce-eeeehhccc--ce----------ecceec--c-
Confidence 4567999999998776555455578999999999999999999986 999964322 00 111222 2
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
...|+.-+|+|+|++|.-++. |.-+||.+.-.++...+
T Consensus 280 -sgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~ 317 (445)
T KOG2139|consen 280 -SGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVF 317 (445)
T ss_pred -CCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccc
Confidence 236999999999999887765 45568888655554444
No 214
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=5.6e-06 Score=86.19 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=84.8
Q ss_pred cccccCCCCeEEEEECCCC----cEEEEeecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCC
Q 005349 293 HFPDADNVGMVIVRDIVSK----NVIAQFRAHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGT 366 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~----~~i~~~~~H~~~Is~laFSPd--G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~ 366 (701)
..+++..|++|+|||+.+. .+-...++|.+.|..|.|-+- |+.+|+||.|++ +.||.-....... .+.
T Consensus 27 RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt-v~iWEE~~~~~~~-----~~~ 100 (361)
T KOG2445|consen 27 RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT-VSIWEEQEKSEEA-----HGR 100 (361)
T ss_pred eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc-eeeeeeccccccc-----ccc
Confidence 4567889999999997543 577888999999999999874 999999999998 8999864321000 000
Q ss_pred ceeEEEEEeccCCcccEEEEEEcC--CCCEEEEEeCCCcEEEEecCCCCCce
Q 005349 367 SYVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSV 416 (701)
Q Consensus 367 ~~~~l~~l~rG~~~a~I~~iaFSp--Dg~~lAsgS~dgTI~Iwdl~~~g~~~ 416 (701)
.-....+|.- ....|++|+|+| -|-.||+++.||+++||+.-......
T Consensus 101 ~Wv~~ttl~D--srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 101 RWVRRTTLVD--SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS 150 (361)
T ss_pred eeEEEEEeec--CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc
Confidence 1122223321 123499999998 68899999999999999987655443
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=2.9e-05 Score=87.27 Aligned_cols=95 Identities=12% Similarity=0.113 Sum_probs=60.3
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcc
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 381 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a 381 (701)
.|.++|+.++. +..+..|...+...+|+|||+.|+..+..+....||.+... . ...+.+ .+. +.
T Consensus 265 ~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~-~---------g~~~~l-t~~-g~--- 328 (427)
T PRK02889 265 QIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS-G---------GAAQRV-TFT-GS--- 328 (427)
T ss_pred eEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC-C---------CceEEE-ecC-CC---
Confidence 35555666554 45566666566778999999998877754323678876432 0 011222 222 21
Q ss_pred cEEEEEEcCCCCEEEEEeCCC---cEEEEecCCC
Q 005349 382 VIQDISFSDDSNWIMISSSRG---TSHLFAINPL 412 (701)
Q Consensus 382 ~I~~iaFSpDg~~lAsgS~dg---TI~Iwdl~~~ 412 (701)
.....+|||||++||..+.++ .|.+||+...
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 134678999999999887665 5888988653
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.34 E-value=1.2e-06 Score=98.26 Aligned_cols=144 Identities=13% Similarity=0.232 Sum_probs=107.7
Q ss_pred CEEEEEec--CCEEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCcc
Q 005349 138 PIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRV 215 (701)
Q Consensus 138 ~V~sV~~s--~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~ 215 (701)
.|++|+|. +.-|+++.+.++++||...+..++++.+|.+.. + .+||+-+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtV------------y-------cVAys~d---------- 64 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTV------------Y-------CVAYAKD---------- 64 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceE------------E-------EEEEccC----------
Confidence 68888885 456777888999999999999999999885421 1 2456510
Q ss_pred CCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCccccccc
Q 005349 216 NPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFP 295 (701)
Q Consensus 216 sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~ 295 (701)
| ..|+
T Consensus 65 -----------------G----------------------------------------------------------krFA 69 (1081)
T KOG1538|consen 65 -----------------G----------------------------------------------------------KRFA 69 (1081)
T ss_pred -----------------C----------------------------------------------------------ceec
Confidence 0 1234
Q ss_pred ccCCCCeEEEEECCCCcEEEEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 296 DADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~~~i~~~~-~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
++..|..|.||.-.- -..++ .|+..|.||.|+|-...|||||-.. +-+|..... .+.+.
T Consensus 70 SG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd--FglWS~~qK---------------~V~K~ 129 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD--FGLWSPEQK---------------SVSKH 129 (1081)
T ss_pred cCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh--ccccChhhh---------------hHHhh
Confidence 566788999997543 23444 8999999999999999999999763 788976543 11111
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwd 408 (701)
| ..++|.+++|..||++||.|-.+|||.|-+
T Consensus 130 -k--ss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 130 -K--SSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred -h--hheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 1 235699999999999999999999999874
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.34 E-value=0.00017 Score=79.68 Aligned_cols=179 Identities=16% Similarity=0.138 Sum_probs=111.4
Q ss_pred cEEEEEECCCCcEEEEEecCCCEE-EEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIY-SVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~-sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
+.|.+.|..|++.+.++.....+. .+.++ ++++-| ..++.|.++|+.+.+.+.++..... |
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---------------~ 80 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---------------P 80 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---------------E
T ss_pred CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---------------c
Confidence 679999999999999998765544 46665 466655 5689999999999999888865422 1
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
+-+|++. +|+.+ +
T Consensus 81 -----~~i~~s~---------------------------DG~~~-----------~------------------------ 93 (369)
T PF02239_consen 81 -----RGIAVSP---------------------------DGKYV-----------Y------------------------ 93 (369)
T ss_dssp -----EEEEE-----------------------------TTTEE-----------E------------------------
T ss_pred -----ceEEEcC---------------------------CCCEE-----------E------------------------
Confidence 2233321 11111 0
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecC-------CCCeEEEEEcCCCCEEEEEeCCCcE
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH-------KSPISALCFDPSGILLVTASVQGHN 345 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H-------~~~Is~laFSPdG~lLaTaS~dGt~ 345 (701)
+....++.|.|+|..+.++++++... .+.+.+|..+|....++.+-.|...
T Consensus 94 ----------------------v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 94 ----------------------VANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp ----------------------EEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred ----------------------EEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 01123578999999999999988743 3578999999999977777776443
Q ss_pred EEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCCC
Q 005349 346 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPLGG 414 (701)
Q Consensus 346 I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsg-S~dgTI~Iwdl~~~g~ 414 (701)
|-+-|.... .......+..|. ...+..|+||++|++++ ..++.|-++|..+.+.
T Consensus 152 I~vVdy~d~------------~~~~~~~i~~g~---~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 152 IWVVDYSDP------------KNLKVTTIKVGR---FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp EEEEETTTS------------SCEEEEEEE--T---TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred EEEEEeccc------------cccceeeecccc---cccccccCcccceeeecccccceeEEEeeccceE
Confidence 555565432 112223333332 26789999999987664 5577899999876533
No 218
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=9.4e-07 Score=97.42 Aligned_cols=82 Identities=18% Similarity=0.296 Sum_probs=72.5
Q ss_pred EEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC--C
Q 005349 314 IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD--D 391 (701)
Q Consensus 314 i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp--D 391 (701)
-+.|.+|++=|+||.|+.||.+||+||+|-+ +.|||.... +.++.++.||+ +.|.++.|=| .
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r-~ivWd~~~~--------------KllhsI~TgHt-aNIFsvKFvP~tn 106 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTR-LIVWDPFEY--------------KLLHSISTGHT-ANIFSVKFVPYTN 106 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcce-EEeecchhc--------------ceeeeeecccc-cceeEEeeeccCC
Confidence 3678899999999999999999999999966 899998754 67788888876 5799999988 6
Q ss_pred CCEEEEEeCCCcEEEEecCC
Q 005349 392 SNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 392 g~~lAsgS~dgTI~Iwdl~~ 411 (701)
.+.+++|..|..|||||++.
T Consensus 107 nriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred CeEEEeccCcceEEEEeccc
Confidence 67899999999999999985
No 219
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.31 E-value=2e-07 Score=106.61 Aligned_cols=97 Identities=22% Similarity=0.371 Sum_probs=84.8
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
.+.++.+|-.|+||...+..+++..++|.+.|+.++.+.+..++|++|.|. +|++|.+..+ ..+
T Consensus 204 ~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~-vIrvWrl~~~--------------~pv- 267 (1113)
T KOG0644|consen 204 YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDK-VIRVWRLPDG--------------APV- 267 (1113)
T ss_pred eEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCc-eEEEEecCCC--------------chH-
Confidence 345678899999999999999999999999999999999999999999995 6999999887 333
Q ss_pred EEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
.+-||++.+ |+.|+|||-- +++.|||+++||..
T Consensus 268 svLrghtga-vtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 268 SVLRGHTGA-VTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred HHHhccccc-eeeeccCccc----cCCCCCceEecccc
Confidence 333788765 9999999964 88999999999986
No 220
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.28 E-value=3.8e-06 Score=85.90 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=54.1
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKI 351 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl 351 (701)
-+++++-||.||||..++.++++.++-|...|++|+|+||..++|.||.|++ |-+|++
T Consensus 265 IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL 322 (323)
T KOG0322|consen 265 ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL 322 (323)
T ss_pred EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence 3566788999999999999999999999999999999999999999999988 999986
No 221
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=1e-05 Score=89.96 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=53.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCC
Q 005349 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 353 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~ 353 (701)
..+..++.|+++|..++.++....+|...+++++|.|+|-+|++++.||. +++|.+..
T Consensus 505 ~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~ 562 (577)
T KOG0642|consen 505 FTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDV 562 (577)
T ss_pred EecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccc
Confidence 35678999999999999999999999999999999999999999999997 89998854
No 222
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.26 E-value=3.6e-05 Score=88.47 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=73.8
Q ss_pred cccccCCCCeEEEEECCCC--------cEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCC
Q 005349 293 HFPDADNVGMVIVRDIVSK--------NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDA 364 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~--------~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~ 364 (701)
+|.-+...|.|.--+-... +.+..+..|.++|.++.|+|=+..+...+.|.+ ++||.-...
T Consensus 362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~---------- 430 (555)
T KOG1587|consen 362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVI---------- 430 (555)
T ss_pred eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCC----------
Confidence 4556677888877332221 234577788999999999997665555555776 899987622
Q ss_pred CCceeEEEEEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCC
Q 005349 365 GTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 365 ~~~~~~l~~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~~g 413 (701)
...++.+.+. ...|.+++||| -...||++..||++.||||....
T Consensus 431 ---~~Pl~~~~~~--~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 431 ---ASPLLSLDSS--PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred ---CCcchhhhhc--cceeeeeEEcCcCceEEEEEcCCCceehhhhhccc
Confidence 1334444432 23399999999 56788999999999999997543
No 223
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.25 E-value=4.4e-05 Score=80.12 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=78.0
Q ss_pred CCCeEEEEEC-CCCcE--EEEeecC-----CCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCcee
Q 005349 299 NVGMVIVRDI-VSKNV--IAQFRAH-----KSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 369 (701)
Q Consensus 299 ~dG~V~IwDl-~s~~~--i~~~~~H-----~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~ 369 (701)
....|+|+|+ +.|+. +.....| .+-|+|++||| +.++||.++--.+ +-|+.-... .
T Consensus 177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~-~giy~~~~~--------------~ 241 (406)
T KOG2919|consen 177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQR-VGIYNDDGR--------------R 241 (406)
T ss_pred ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccce-eeeEecCCC--------------C
Confidence 4467899998 44432 2222233 57899999999 6778998887544 677765433 4
Q ss_pred EEEEEeccCCcccEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCCce-eecCCCCCc
Q 005349 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSV-NFQPTDANF 425 (701)
Q Consensus 370 ~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~-dgTI~Iwdl~~~g~~~-~~~~H~~~~ 425 (701)
.++.|. |+. .-|+-++|.+||+.|.+|+. |..|-.|||...+.++ .+..|.+.+
T Consensus 242 pl~llg-gh~-gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~T 297 (406)
T KOG2919|consen 242 PLQLLG-GHG-GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDT 297 (406)
T ss_pred ceeeec-ccC-CCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCc
Confidence 556653 543 34999999999999999987 6689999999877665 667776533
No 224
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=0.00076 Score=76.46 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=34.9
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEE--eCC--EEEEEECCCCce
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC--QAA--QVHCFDAATLEI 167 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa--~~~--~I~iwDl~t~~~ 167 (701)
..|.+||+.+++......++....+..|+ ++.|+.+ .++ +|+++|+.+++.
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 46999999999864444455555677886 4666653 233 599999988763
No 225
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.24 E-value=1.2e-05 Score=86.27 Aligned_cols=135 Identities=17% Similarity=0.160 Sum_probs=93.3
Q ss_pred cccCCCCeEEEEECC--------C--------CcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCC
Q 005349 295 PDADNVGMVIVRDIV--------S--------KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT 358 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~--------s--------~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~ 358 (701)
+++.++|.|.+|-.. + -.....+++|...|..|+|+||+.+|++++.|.. +++||+..|
T Consensus 81 ASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns-~~l~Dv~~G---- 155 (434)
T KOG1009|consen 81 ASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS-VRLWDVHAG---- 155 (434)
T ss_pred eecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccce-EEEEEeccc----
Confidence 345566777777544 2 2356678899999999999999999999999975 899999987
Q ss_pred CCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeec-----------CCCCCccc
Q 005349 359 SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ-----------PTDANFTT 427 (701)
Q Consensus 359 ~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~-----------~H~~~~~~ 427 (701)
..+..+ -+ +..-++.++|.|-++++++=|.|+..+++.++..+...... .++....=
T Consensus 156 ----------~l~~~~-~d-h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rL 223 (434)
T KOG1009|consen 156 ----------QLLAIL-DD-HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRL 223 (434)
T ss_pred ----------eeEeec-cc-cccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeee
Confidence 333333 22 23459999999999999999999988888876543322221 01111111
Q ss_pred ccCCCcccccccCCCCCCC
Q 005349 428 KHGAMAKSGVRWPPNLGLQ 446 (701)
Q Consensus 428 ~~~~~~~~~~~~~~~s~~~ 446 (701)
+|+-+.++.+|+..+++..
T Consensus 224 fhDeTlksFFrRlsfTPdG 242 (434)
T KOG1009|consen 224 FHDETLKSFFRRLSFTPDG 242 (434)
T ss_pred eecCchhhhhhhcccCCCC
Confidence 3466677777777666444
No 226
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.21 E-value=0.00047 Score=77.70 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=56.8
Q ss_pred EEEEECCC-CcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 303 VIVRDIVS-KNVIAQFRAHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 303 V~IwDl~s-~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG--t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
|.++++.. +.....+..+...+...+|||||++|+..+.++ ..|.+||+..+ .. ..+..+
T Consensus 307 ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g------------~~---~~Lt~~-- 369 (428)
T PRK01029 307 IYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG------------RD---YQLTTS-- 369 (428)
T ss_pred EEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC------------Ce---EEccCC--
Confidence 44444432 223344555555777899999999998776542 34888998765 11 222222
Q ss_pred cccEEEEEEcCCCCEEEEEeC-CC--cEEEEecCC
Q 005349 380 NAVIQDISFSDDSNWIMISSS-RG--TSHLFAINP 411 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~-dg--TI~Iwdl~~ 411 (701)
...+.+.+|+|||++|+..+. ++ .+.++++..
T Consensus 370 ~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 370 PENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 123678999999999885543 33 456666653
No 227
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.20 E-value=1.5e-05 Score=88.05 Aligned_cols=105 Identities=21% Similarity=0.358 Sum_probs=78.8
Q ss_pred cCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r 376 (701)
...+|.|.|.|..+.+.+..+......-..++|+|||++|..++.||. |.++|+.+. +.+.+++-
T Consensus 12 ~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~-vsviD~~~~--------------~~v~~i~~ 76 (369)
T PF02239_consen 12 ERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGT-VSVIDLATG--------------KVVATIKV 76 (369)
T ss_dssp EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSE-EEEEETTSS--------------SEEEEEE-
T ss_pred ecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCe-EEEEECCcc--------------cEEEEEec
Confidence 346789999999999999999976555456899999999999999996 899999987 56677765
Q ss_pred cCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCCceeec
Q 005349 377 GLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 377 G~~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~~g~~~~~~ 419 (701)
|.. -.++++|+||+++++++ ..+++.|+|..+......+.
T Consensus 77 G~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 77 GGN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp SSE---EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred CCC---cceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 543 57899999999999876 58999999998765444443
No 228
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=0.00018 Score=80.37 Aligned_cols=189 Identities=16% Similarity=0.252 Sum_probs=127.0
Q ss_pred cEEEEEECCCCcEEEEEecC-CCEEEEEec--CCEEEEEe-CCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAICQ-AAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~-s~V~sV~~s--~~~LaVa~-~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
..|.-.+|+.|+.+.-++.. ..+..|..| ..+||++. ++.|.+||.++-....+|....+....|+.. .
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~-------~ 227 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGD-------A 227 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcccc-------c
Confidence 34677799999999988875 688899998 46788754 8999999999887776665432211111100 0
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
+.+..-|.|..
T Consensus 228 -~~svTal~F~d-------------------------------------------------------------------- 238 (703)
T KOG2321|consen 228 -APSVTALKFRD-------------------------------------------------------------------- 238 (703)
T ss_pred -cCcceEEEecC--------------------------------------------------------------------
Confidence 00000111110
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCC--CCeEEEEEcCC--CCEEEEEeCCCcEEEE
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK--SPISALCFDPS--GILLVTASVQGHNINI 348 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~--~~Is~laFSPd--G~lLaTaS~dGt~I~I 348 (701)
+|. ++..+...|.|.|||+++.+++. .+.|. -||..+.|-+. +..|+|++ .++++|
T Consensus 239 --------------~gL---~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e~pi~~l~~~~~~~q~~v~S~D--k~~~ki 298 (703)
T KOG2321|consen 239 --------------DGL---HVAVGTSTGSVLIYDLRASKPLL-VKDHGYELPIKKLDWQDTDQQNKVVSMD--KRILKI 298 (703)
T ss_pred --------------Cce---eEEeeccCCcEEEEEcccCCcee-ecccCCccceeeecccccCCCceEEecc--hHHhhh
Confidence 011 23335567999999999988763 34454 69999999886 45566654 567999
Q ss_pred EEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 349 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 349 wdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
||-.++ .....+. ....|.++||=|++-.+.++-.++.++.|=+...|..+.+
T Consensus 299 Wd~~~G--------------k~~asiE---pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrW 351 (703)
T KOG2321|consen 299 WDECTG--------------KPMASIE---PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRW 351 (703)
T ss_pred cccccC--------------Cceeecc---ccCCcCceeeecCCceEEEecCCCcceeEEccccCCCchh
Confidence 998877 2222221 2234999999999999999999999999988777665544
No 229
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.16 E-value=0.00026 Score=78.57 Aligned_cols=93 Identities=17% Similarity=0.232 Sum_probs=61.3
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC-c-EEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-H-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG-t-~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
..|.+||+.++.. ..+..|.......+|+|||+.|+.++..+ . .|.++|+..+ . ...+..+
T Consensus 258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~------------~---~~~l~~~- 320 (417)
T TIGR02800 258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG------------E---VRRLTFR- 320 (417)
T ss_pred ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC------------C---EEEeecC-
Confidence 4588899887754 44555555556789999999888776543 2 3555565543 1 1122211
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCC---cEEEEecCC
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRG---TSHLFAINP 411 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dg---TI~Iwdl~~ 411 (701)
...+...+|||||++|+.++.++ .|.+||+..
T Consensus 321 -~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 321 -GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred -CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 12366789999999999988876 677777754
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.00022 Score=76.56 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=63.2
Q ss_pred cCCCCeEEEEECCCCcEEEE-eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe
Q 005349 297 ADNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~-~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~ 375 (701)
++.-|.+..+|+..++.+.. |++-++.|++|-.+|.+.+||+|+-|.. +||||+.+. ..+++.+
T Consensus 265 gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktr--------------kll~kvY 329 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTR--------------KLLHKVY 329 (412)
T ss_pred ecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccc--------------hhhhhhh
Confidence 45568899999999988776 8899999999999999999999999965 999999885 4444443
Q ss_pred ccCCcccEEEEEEcCCCCE
Q 005349 376 RGLTNAVIQDISFSDDSNW 394 (701)
Q Consensus 376 rG~~~a~I~~iaFSpDg~~ 394 (701)
- ...+++|-|.++-++
T Consensus 330 v---Ks~lt~il~~~~~n~ 345 (412)
T KOG3881|consen 330 V---KSRLTFILLRDDVNI 345 (412)
T ss_pred h---hccccEEEecCCccc
Confidence 2 234777777766444
No 231
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.00014 Score=81.64 Aligned_cols=112 Identities=10% Similarity=0.122 Sum_probs=93.1
Q ss_pred cCCCCeEEEEECCCCcEEEEee--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~--~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
+...|.|.+|++..++.-..|. .|.++|+++..+.+-..|-|++.|++ +-.|+.... +++..+
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~-v~~~~~~~~--------------~~~~~~ 140 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLK-VVYILEKEK--------------VIIRIW 140 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCcee-EEEEecccc--------------eeeeee
Confidence 3456889999999999888887 89999999999999999999999987 889998876 454444
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCccc
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTT 427 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~~~~ 427 (701)
. +.. -.+.+++.+|||+.|+++| ++|++||+++..-...|.+|.+.+..
T Consensus 141 ~-~~~-~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t 189 (541)
T KOG4547|consen 141 K-EQK-PLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRT 189 (541)
T ss_pred c-cCC-CccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEE
Confidence 3 322 2489999999999999987 68999999998878899999776543
No 232
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.00074 Score=76.56 Aligned_cols=93 Identities=18% Similarity=0.271 Sum_probs=58.4
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCC-Cc-EEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~d-Gt-~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
.|.++|+.+++. ..+..|.......+|+|||+.|+..+.. |. .|.++|+.++ ....+ ++ .+..
T Consensus 287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g------------~~~~L-t~-~g~~ 351 (448)
T PRK04792 287 EIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG------------KVSRL-TF-EGEQ 351 (448)
T ss_pred EEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC------------CEEEE-ec-CCCC
Confidence 588889887764 4555566667788999999988776653 33 2444455443 11222 12 2221
Q ss_pred cccEEEEEEcCCCCEEEEEeC-CCcEEEEecCCC
Q 005349 380 NAVIQDISFSDDSNWIMISSS-RGTSHLFAINPL 412 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~-dgTI~Iwdl~~~ 412 (701)
....+|||||++|+..+. ++..+||-++..
T Consensus 352 ---~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~ 382 (448)
T PRK04792 352 ---NLGGSITPDGRSMIMVNRTNGKFNIARQDLE 382 (448)
T ss_pred ---CcCeeECCCCCEEEEEEecCCceEEEEEECC
Confidence 345799999999988765 455667655443
No 233
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.96 E-value=0.0013 Score=73.79 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=58.6
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCC-Cc-EEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~d-Gt-~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
..|.+||+.+++. ..+..+........|+|||+.|+..+.. |. .|.++|+..+ ....+ .+ .+.
T Consensus 267 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g------------~~~~l-t~-~~~ 331 (430)
T PRK00178 267 PEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG------------RAERV-TF-VGN 331 (430)
T ss_pred ceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC------------CEEEe-ec-CCC
Confidence 3588889988764 4455565566778999999988776653 33 2555566544 11222 22 121
Q ss_pred CcccEEEEEEcCCCCEEEEEeCC-C--cEEEEecCC
Q 005349 379 TNAVIQDISFSDDSNWIMISSSR-G--TSHLFAINP 411 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~d-g--TI~Iwdl~~ 411 (701)
.....+|||||++|+..+.+ + .|.+||+..
T Consensus 332 ---~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 332 ---YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred ---CccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 13457899999999987754 3 356667654
No 234
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.95 E-value=3.2e-05 Score=91.22 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=76.1
Q ss_pred cCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r 376 (701)
+.--|.|.+|+....+.-..+.+|.+.|.++.|+-||++++|+|+|-+ ||+|++.+.... .... -
T Consensus 151 gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~-------------~~~~-f 215 (967)
T KOG0974|consen 151 GSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVL-------------GCTG-F 215 (967)
T ss_pred ccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcc-eeeeeccccccc-------------Cccc-c
Confidence 334578999998754443468899999999999999999999999965 999999886210 0111 2
Q ss_pred cCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 377 G~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
|| +|+|+.++|.|. .+++++.|-|.++|+.+
T Consensus 216 gH-saRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 216 GH-SARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred cc-cceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 44 578999999998 99999999999999554
No 235
>KOG4415 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=5.2e-06 Score=80.46 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=29.8
Q ss_pred eeEeeeeEeecCC-CcccccCCeeEEEEccccc
Q 005349 635 LYISEAELQMHPP-RIPLWAKPQIYFQSMMIKD 666 (701)
Q Consensus 635 ~~ls~aEv~~h~~-~~piW~~~~~~F~~~~~~~ 666 (701)
.||++|||.||.+ ||+|||+|||.|+.+...+
T Consensus 28 eWl~hVEi~Th~gPHRriWmGPQFef~eih~d~ 60 (247)
T KOG4415|consen 28 EWLPHVEIRTHLGPHRRIWMGPQFEFFEIHEDD 60 (247)
T ss_pred ccccceEEEeccCccceeeecCceeEEEecCCC
Confidence 5999999999999 9999999999999998754
No 236
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.88 E-value=0.00034 Score=73.57 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=70.8
Q ss_pred CCCCeEEEEECCCCc---EEEEe-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCC-CCCCCccCCCC---cee
Q 005349 298 DNVGMVIVRDIVSKN---VIAQF-RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI-LGTSSACDAGT---SYV 369 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~---~i~~~-~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~-~~~~s~~~~~~---~~~ 369 (701)
+....|.||-++... +-+++ +.+.+.|++|+|.|++-+||+||.|+. .|||...-.. ........+.. -..
T Consensus 119 Sgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k-~rVfSayIK~Vdekpap~pWgsk~PFG~ 197 (361)
T KOG1523|consen 119 SGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK-CRVFSAYIKGVDEKPAPTPWGSKMPFGQ 197 (361)
T ss_pred cCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc-eeEEEEeeeccccCCCCCCCccCCcHHH
Confidence 334456666554432 11222 367889999999999999999999998 8999642210 00000111110 011
Q ss_pred EEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 370 ~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
.+.++. ....-|..+.|||+|..||-.+.|.++.+=|....
T Consensus 198 lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 198 LMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred HHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 222331 12345899999999999999999999998776543
No 237
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.87 E-value=0.018 Score=64.76 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=36.7
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEEeC----CEEEEEECCCCc
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQA----AQVHCFDAATLE 166 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa~~----~~I~iwDl~t~~ 166 (701)
..|.++|+.+|+......++..+....|+ ++.|+...+ .+|+++|+.+++
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 35999999999876655677777777786 456665432 589999998876
No 238
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.87 E-value=5.2e-05 Score=55.14 Aligned_cols=37 Identities=30% Similarity=0.516 Sum_probs=31.3
Q ss_pred EEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005349 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 370 ~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwd 408 (701)
+++++ +++. ..|.+|+|+|++++|++++.|++|+|||
T Consensus 3 ~~~~~-~~h~-~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTF-RGHS-SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEE-ESSS-SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEE-cCCC-CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45555 4554 4599999999999999999999999997
No 239
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.0026 Score=71.33 Aligned_cols=92 Identities=13% Similarity=0.305 Sum_probs=69.2
Q ss_pred cCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ---GHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~d---Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
+-...+|.|+|++.. ++..|. .+|=+++-|||.|.+|+-|+.+ |. |-|||+... +++-+
T Consensus 290 GfMPAkvtifnlr~~-~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~--------------K~i~~ 351 (566)
T KOG2315|consen 290 GFMPAKVTIFNLRGK-PVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNR--------------KLIAK 351 (566)
T ss_pred ecccceEEEEcCCCC-EeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEeccch--------------hhccc
Confidence 345568999998754 555553 4677889999999999999874 54 899999865 55555
Q ss_pred EeccCCcccEEEEEEcCCCCEEEEEeC------CCcEEEEecC
Q 005349 374 LQRGLTNAVIQDISFSDDSNWIMISSS------RGTSHLFAIN 410 (701)
Q Consensus 374 l~rG~~~a~I~~iaFSpDg~~lAsgS~------dgTI~Iwdl~ 410 (701)
+. .+.-.-+.|+|||+||.+++. |+.++||++.
T Consensus 352 ~~----a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 352 FK----AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cc----cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 43 122345789999999998876 7889999985
No 240
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.84 E-value=0.0031 Score=76.15 Aligned_cols=102 Identities=11% Similarity=0.195 Sum_probs=67.6
Q ss_pred cCCCCeEEEEECCCCcEEEEee-cCCCCeEEEEEcCC---CCEEEEEeC-CCcEEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPS---GILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~-~H~~~Is~laFSPd---G~lLaTaS~-dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
+...|.+.+||++=+.++.... +|..+|..|+..|- ....++++. -.+-+-+|++.++. +.
T Consensus 1213 Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~--------------~~ 1278 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL--------------RQ 1278 (1431)
T ss_pred ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc--------------ce
Confidence 3455889999999888887665 45578888887773 256666655 33348999998871 11
Q ss_pred EEEecc-----------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 372 YRLQRG-----------------LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 372 ~~l~rG-----------------~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
+.|.-+ ...-....+++..-+..+.+|+.|+.|+.||....
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 222111 00111334556666778999999999999998654
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.84 E-value=0.051 Score=59.43 Aligned_cols=108 Identities=19% Similarity=0.381 Sum_probs=68.1
Q ss_pred CeEEEEECCCCc--E--EEEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe
Q 005349 301 GMVIVRDIVSKN--V--IAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (701)
Q Consensus 301 G~V~IwDl~s~~--~--i~~~~-~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~ 375 (701)
..|.+|++.... . ...++ .....-..|+|+|||+++.........|.+|++... . .....+..+.
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-~---------g~~~~~~~~~ 235 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-D---------GSLTEIQTIS 235 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-T---------TEEEEEEEEE
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-C---------CceeEEEEee
Confidence 468888887654 2 23333 223456789999999999888777777999998832 0 0122333322
Q ss_pred ---ccCCcc-cEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCCceee
Q 005349 376 ---RGLTNA-VIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 376 ---rG~~~a-~I~~iaFSpDg~~lAsgS~-dgTI~Iwdl~~~g~~~~~ 418 (701)
.+.... .-..|++||||++|.++.. .++|.+|+++...+...+
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~ 283 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTL 283 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE
T ss_pred eccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEE
Confidence 122111 3678999999999887664 678999999765554443
No 242
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=5.6e-05 Score=80.38 Aligned_cols=77 Identities=23% Similarity=0.398 Sum_probs=63.0
Q ss_pred eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEE
Q 005349 317 FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIM 396 (701)
Q Consensus 317 ~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lA 396 (701)
-++| .+|++|++++||+.|+|||.+...|+|||..++ ....|. .+|. .-+.-+.|||||.+|.
T Consensus 192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg------------~~~pL~--~~gl--gg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG------------QKIPLI--PKGL--GGFSLLKWSPDGDVLF 254 (445)
T ss_pred CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC------------Cccccc--ccCC--CceeeEEEcCCCCEEE
Confidence 3466 699999999999999999999889999999887 222332 2333 2388899999999999
Q ss_pred EEeCCCcEEEEecC
Q 005349 397 ISSSRGTSHLFAIN 410 (701)
Q Consensus 397 sgS~dgTI~Iwdl~ 410 (701)
+++-|++.++|..+
T Consensus 255 aAt~davfrlw~e~ 268 (445)
T KOG2139|consen 255 AATCDAVFRLWQEN 268 (445)
T ss_pred Eecccceeeeehhc
Confidence 99999999999654
No 243
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.78 E-value=0.00035 Score=73.68 Aligned_cols=94 Identities=14% Similarity=0.252 Sum_probs=67.1
Q ss_pred cCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeC-----------------------------------
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV----------------------------------- 341 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~----------------------------------- 341 (701)
.+.+-.|.||.+.+.+. ..++-....+-.++|+|||++.|-++.
T Consensus 110 seF~lriTVWSL~t~~~-~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP 188 (447)
T KOG4497|consen 110 SEFDLRITVWSLNTQKG-YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP 188 (447)
T ss_pred ecceeEEEEEEecccee-EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC
Confidence 34556799999988764 234433455678899999999888864
Q ss_pred CCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005349 342 QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 342 dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwd 408 (701)
||..+-|||.--. ..+|..+||. -|..++|||.+++||+|+.|+.++|.+
T Consensus 189 dg~~laVwd~~Le--------------ykv~aYe~~l---G~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 189 DGNWLAVWDNVLE--------------YKVYAYERGL---GLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred CCcEEEEecchhh--------------heeeeeeecc---ceeEEEeccccceEEeeccchhhhhhc
Confidence 4444555553322 3455566764 288999999999999999999999844
No 244
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.78 E-value=0.0022 Score=65.36 Aligned_cols=64 Identities=13% Similarity=0.005 Sum_probs=54.7
Q ss_pred CCcEEEEEECCCCcEEEEEec-CCCEEEEEe---cCCEEEEEeCCEEEEEECCCCceeEEEecCCCcc
Q 005349 115 VPTVVHFYSLRSQSYVHMLKF-RSPIYSVRC---SSRVVAICQAAQVHCFDAATLEIEYAILTNPIVM 178 (701)
Q Consensus 115 ~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~---s~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~ 178 (701)
-++.+.-||+++|+..++++. ..-|.+|.. ++++|..+.|+++++||..|.++..++..+.++.
T Consensus 134 GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~ 201 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN 201 (325)
T ss_pred CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChh
Confidence 358899999999999999986 457777777 4788888999999999999999999998776543
No 245
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.78 E-value=5.9e-05 Score=81.17 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=75.0
Q ss_pred CCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
+++..+.+|...++. ...+-+|-+-++.|+||||++.+.||+.|++ |||=..... .-+..|--|
T Consensus 129 gD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~--------------f~IesfclG 192 (390)
T KOG3914|consen 129 GDVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPAT--------------FVIESFCLG 192 (390)
T ss_pred CCceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcc--------------cchhhhccc
Confidence 345667777766643 3456699999999999999999999999997 888665432 223344446
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCc
Q 005349 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 378 ~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
|+ .-|..++.-++ +.|+++|.|+|+++||+..+...
T Consensus 193 H~-eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 193 HK-EFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred cH-hheeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 54 34888888654 67999999999999999987665
No 246
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.041 Score=59.21 Aligned_cols=106 Identities=14% Similarity=0.239 Sum_probs=71.5
Q ss_pred CCeEEEEECCCC-cEEEEeecC---------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCcee
Q 005349 300 VGMVIVRDIVSK-NVIAQFRAH---------KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 369 (701)
Q Consensus 300 dG~V~IwDl~s~-~~i~~~~~H---------~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~ 369 (701)
+++|.+|+.... ..+..++.+ .....+|..+|||++|..+...-..|-+|.+.+. . .
T Consensus 212 ~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~----------~---g 278 (346)
T COG2706 212 NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD----------G---G 278 (346)
T ss_pred CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC----------C---C
Confidence 456777777653 233333322 2478899999999999988776667899998764 0 1
Q ss_pred EEEEEeccCCccc-EEEEEEcCCCCEEEEEeCC-CcEEEEecCCCCCceee
Q 005349 370 HLYRLQRGLTNAV-IQDISFSDDSNWIMISSSR-GTSHLFAINPLGGSVNF 418 (701)
Q Consensus 370 ~l~~l~rG~~~a~-I~~iaFSpDg~~lAsgS~d-gTI~Iwdl~~~g~~~~~ 418 (701)
+|--+.+-.+.+. -.+..|+++|++|+++..+ .+|+||.+++..+..+.
T Consensus 279 ~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 279 KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 2222211112222 4688999999999988875 47999999988777655
No 247
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.76 E-value=0.00011 Score=81.31 Aligned_cols=113 Identities=21% Similarity=0.232 Sum_probs=79.6
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC------CC---------C
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG------IL---------G 357 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~------~~---------~ 357 (701)
+|+-...||.+.|.. +++++-..+.+|.+.|.|-.|+|||+-|+|++.||- |+||.-.-. .. +
T Consensus 77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~-iKiWSrsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGV-IKIWSRSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCce-EEEEeccchHHHHHhhcCceeEEEEEC
Confidence 455567889988876 345666788899999999999999999999999996 999973211 00 1
Q ss_pred CCCcc-----C------CCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 358 TSSAC-----D------AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 358 ~~s~~-----~------~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
+.|.. + +......+.+. |.| ..-|.++.|++.+..+++|+.|-..+|||-
T Consensus 155 p~S~~vl~c~g~h~~IKpL~~n~k~i~W-kAH-DGiiL~~~W~~~s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 155 PNSNSIVFCQGGHISIKPLAANSKIIRW-RAH-DGLVLSLSWSTQSNIIASGGEDFRFKIWDA 215 (737)
T ss_pred CCCCceEEecCCeEEEeecccccceeEE-ecc-CcEEEEeecCccccceeecCCceeEEeecc
Confidence 11110 0 00000111121 232 345899999999999999999999999996
No 248
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.75 E-value=3.3e-05 Score=87.08 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=72.2
Q ss_pred CCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
+..+.|||...|..+.++++|...|.|++++.||+++|+|+.|. .+.||.-+-. -.|+..|
T Consensus 32 g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK-~VI~W~~klE-----------------G~LkYSH- 92 (1081)
T KOG1538|consen 32 GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADK-SVIIWTSKLE-----------------GILKYSH- 92 (1081)
T ss_pred CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCce-eEEEeccccc-----------------ceeeecc-
Confidence 45799999999999999999999999999999999999999996 4889975432 1232233
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
...|+|+.|+|-...||+++.. ..-+|..
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLs-dFglWS~ 121 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLS-DFGLWSP 121 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchh-hccccCh
Confidence 3359999999999999998864 3445544
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.75 E-value=0.0026 Score=71.79 Aligned_cols=77 Identities=18% Similarity=0.140 Sum_probs=47.1
Q ss_pred CCeEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC
Q 005349 322 SPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~-dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
......+|||||+.|+..+. +|. .+||.+.....+ .....+..+ ...+...+|||||++|+..+.
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~-~~ly~~~~~~~g-----------~~~~~lt~~--~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGR-PRIYIMQIDPEG-----------QSPRLLTKK--YRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCC-ceEEEEECcccc-----------cceEEeccC--CCCccceeECCCCCEEEEEEc
Confidence 34466899999998887764 564 567754321000 011222111 123678899999999998765
Q ss_pred C---CcEEEEecCCC
Q 005349 401 R---GTSHLFAINPL 412 (701)
Q Consensus 401 d---gTI~Iwdl~~~ 412 (701)
+ ..|++||+...
T Consensus 347 ~~g~~~I~v~dl~~g 361 (428)
T PRK01029 347 IKGVRQICVYDLATG 361 (428)
T ss_pred CCCCcEEEEEECCCC
Confidence 4 35788887643
No 250
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.72 E-value=0.021 Score=71.41 Aligned_cols=74 Identities=8% Similarity=0.060 Sum_probs=53.3
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC-----------CcccEEEEEEcCCCC
Q 005349 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-----------TNAVIQDISFSDDSN 393 (701)
Q Consensus 325 s~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~-----------~~a~I~~iaFSpDg~ 393 (701)
..|+|+++|.++++-+.+++ |++||..++. .......|. .-.....|++++||+
T Consensus 807 ~Gvavd~dG~LYVADs~N~r-IrviD~~tg~--------------v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ 871 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHK-IKKLDPATKR--------------VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR 871 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCE-EEEEECCCCe--------------EEEEeccCCcCCCCCcccccccCCceEEEEeCCCC
Confidence 47999999998887776655 9999987651 110000010 001367899999999
Q ss_pred EEEEEeCCCcEEEEecCCCC
Q 005349 394 WIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 394 ~lAsgS~dgTI~Iwdl~~~g 413 (701)
.+++-+.+++|++||+.+..
T Consensus 872 lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 872 LFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEECCCCEEEEEECCCCc
Confidence 99999999999999998753
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.71 E-value=0.00047 Score=81.71 Aligned_cols=101 Identities=16% Similarity=0.166 Sum_probs=79.6
Q ss_pred ccCCCCeEEEEECCCCcEEE-EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 296 DADNVGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~~~i~-~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
+.+.|-.+++|++++.+.+. +.=+|+..|..++|.|+ +|+|++.|-+ .|+|+..-. .+. .
T Consensus 192 s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-crvW~~~~~---------------~l~-~ 252 (967)
T KOG0974|consen 192 SVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-CRVWGVNGT---------------QLE-V 252 (967)
T ss_pred EEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-EEEEecccc---------------eeh-h
Confidence 34577899999999987765 55599999999999999 9999999976 899965422 111 1
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCc
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
.+++-..-|+.++..++.-++.++..|+++++|++...+-+
T Consensus 253 y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 253 YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 22332234999999999999999999999999999765433
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.66 E-value=0.00014 Score=89.74 Aligned_cols=92 Identities=17% Similarity=0.345 Sum_probs=69.6
Q ss_pred CCCCeEEEEECCC---CcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 298 DNVGMVIVRDIVS---KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 298 ~~dG~V~IwDl~s---~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
..++.+.+||.-- ..++. .+|.+.+++++|-|.-++|.||+.+|. |.|||++.. ..++++
T Consensus 2312 ~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rqr--------------ql~h~~ 2374 (2439)
T KOG1064|consen 2312 SDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQR--------------QLRHTF 2374 (2439)
T ss_pred CCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCc-EEEeehHHH--------------HHHHHh
Confidence 3457888999543 22343 899999999999999999999999998 899999764 221121
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
+. +. .-.++.+|+..|+++||+++.++-..++
T Consensus 2375 ---------~~--~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2375 ---------QA--LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred ---------hh--hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 11 22 4468999999999999999988655444
No 253
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.0061 Score=68.41 Aligned_cols=50 Identities=26% Similarity=0.499 Sum_probs=41.6
Q ss_pred CCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEEcC
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV------QGHNINIFKII 352 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~------dGt~I~Iwdl~ 352 (701)
.|.|-|||+.+.+++..+.+-.. +-..|+|||.+|+||.. |.. |+||+..
T Consensus 335 ~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg-~Kiwhyt 390 (566)
T KOG2315|consen 335 PGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNG-IKIWHYT 390 (566)
T ss_pred CCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCC-eEEEEec
Confidence 58899999999999999987654 45789999999999985 433 8999874
No 254
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.00038 Score=74.60 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=84.8
Q ss_pred ccccCCCCeEEEEECCC------CcEEEEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCC
Q 005349 294 FPDADNVGMVIVRDIVS------KNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGT 366 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s------~~~i~~~~-~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~ 366 (701)
+++++.|-.++||.+.. .+++.... .|.+.|.||+|+-..+.|.+|..+|+ +..-|+.+.
T Consensus 71 L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~-VI~HDiEt~------------ 137 (609)
T KOG4227|consen 71 LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT-VIKHDIETK------------ 137 (609)
T ss_pred EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce-eEeeecccc------------
Confidence 45677889999999753 35665554 45689999999999999999999998 678899875
Q ss_pred ceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCc
Q 005349 367 SYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 367 ~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
..+|.+........|+.+.-+|-.+.|++.+.++.|-+||+.....+
T Consensus 138 --qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 138 --QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred --eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC
Confidence 55666643333345999999999999999999999999999765433
No 255
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.62 E-value=0.0005 Score=76.98 Aligned_cols=112 Identities=16% Similarity=0.259 Sum_probs=79.7
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeec------CCC-----CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCc
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRA------HKS-----PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSA 361 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~------H~~-----~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~ 361 (701)
.++.+..+|.|..||-+.+..+..+.+ |.+ .|++|+|+.||-.++.|...|. +.|||++..
T Consensus 189 Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~------- 260 (703)
T KOG2321|consen 189 LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRAS------- 260 (703)
T ss_pred eEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccC-------
Confidence 445566789999999998877766653 322 4999999999999999999998 899999875
Q ss_pred cCCCCceeEEEEEeccCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCCCceeecC
Q 005349 362 CDAGTSYVHLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (701)
Q Consensus 362 ~~~~~~~~~l~~l~rG~~~a~I~~iaFSpD-g~~lAsgS~dgTI~Iwdl~~~g~~~~~~~ 420 (701)
..+..-..+ ..-.|..+.|-+. ++--+.+.+...++|||-.++..-..+..
T Consensus 261 -------~pl~~kdh~-~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 261 -------KPLLVKDHG-YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred -------CceeecccC-CccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc
Confidence 222221111 1234889999763 33344445667899999888766666654
No 256
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.60 E-value=0.032 Score=61.39 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=64.8
Q ss_pred ccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe
Q 005349 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~ 375 (701)
....+|.+..+|..+++.+-..... ...... .++..+..++.+|. +..+|..++ +.+++..
T Consensus 246 ~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~-l~~~d~~tG--------------~~~W~~~ 306 (377)
T TIGR03300 246 AVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGV-VVALDRRSG--------------SELWKND 306 (377)
T ss_pred EEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCe-EEEEECCCC--------------cEEEccc
Confidence 3456789999999999887766521 112222 34666777788887 899999877 4555442
Q ss_pred ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecC
Q 005349 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (701)
Q Consensus 376 rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~ 420 (701)
. ........... .+..|.+++.+|.+++||..++...-.+..
T Consensus 307 ~-~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 307 E-LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred c-ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 1 11111111122 467899999999999999876533334443
No 257
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.59 E-value=0.027 Score=57.05 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=60.7
Q ss_pred CCeEEEEECCCCcEEEEeecCCCC----------e-EEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCce
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSP----------I-SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 368 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~----------I-s~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~ 368 (701)
+|.|..+|+.+|+.+...+.+..+ + ..+.++ +| .+..++.+|..+.+ |+.++
T Consensus 131 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg-------------- 193 (238)
T PF13360_consen 131 SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATG-------------- 193 (238)
T ss_dssp CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTT--------------
T ss_pred cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCC--------------
Confidence 678999999999988888764422 1 233333 55 56666677765666 99887
Q ss_pred eEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 369 VHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 369 ~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
..+++.. .. .+.. ....++..|..++.++++.+||+.++
T Consensus 194 ~~~w~~~--~~--~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 194 EKLWSKP--IS--GIYS-LPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp EEEEEEC--SS---ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred CEEEEec--CC--CccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence 4444321 11 1222 24578888888889999999999874
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.0064 Score=68.57 Aligned_cols=98 Identities=19% Similarity=0.325 Sum_probs=79.3
Q ss_pred cccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
-+.+.|++|..|+...++.++.+++-...+.+++.+|||+.|++||. .|++||+.+. +.+.+|
T Consensus 118 yS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~---~ik~~~~~~k--------------evv~~f 180 (541)
T KOG4547|consen 118 YSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR---QIKVLDIETK--------------EVVITF 180 (541)
T ss_pred EecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc---eEEEEEccCc--------------eEEEEe
Confidence 34567899999999999999999999999999999999999999985 3999999986 555555
Q ss_pred eccCCcccEEEEEEcCC-----CCEEEEEe-CCCcEEEEecCC
Q 005349 375 QRGLTNAVIQDISFSDD-----SNWIMISS-SRGTSHLFAINP 411 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpD-----g~~lAsgS-~dgTI~Iwdl~~ 411 (701)
.|| ...|.+++|--+ |.++.++- .+.-+.+|-+..
T Consensus 181 -tgh-~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 181 -TGH-GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -cCC-CcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 465 457999999887 77766543 355577787765
No 259
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.0012 Score=72.89 Aligned_cols=85 Identities=19% Similarity=0.352 Sum_probs=54.2
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEEEcCCCCCCCCC--ccCCCCceeEEEEEeccCCccc-EEEEEE-cCCCCEEE
Q 005349 322 SPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSS--ACDAGTSYVHLYRLQRGLTNAV-IQDISF-SDDSNWIM 396 (701)
Q Consensus 322 ~~Is~laFSPdG~-lLaTaS~dGt~I~Iwdl~~~~~~~~s--~~~~~~~~~~l~~l~rG~~~a~-I~~iaF-SpDg~~lA 396 (701)
-.|++++|+.+|. +||+-.+. - |.+|.-..+ .|... ....+....+.| +||.+.. |.++-| -|.+.|++
T Consensus 337 v~ITgl~Ysh~~sElLaSYnDe-~-IYLF~~~~~-~G~~p~~~s~~~~~~k~vY---KGHrN~~TVKgVNFfGPrsEyVv 410 (559)
T KOG1334|consen 337 VNITGLVYSHDGSELLASYNDE-D-IYLFNKSMG-DGSEPDPSSPREQYVKRVY---KGHRNSRTVKGVNFFGPRSEYVV 410 (559)
T ss_pred ccceeEEecCCccceeeeeccc-c-eEEeccccc-cCCCCCCCcchhhccchhh---cccccccccceeeeccCccceEE
Confidence 4799999997655 66655544 3 888843322 22111 011112223333 4665554 888876 78999999
Q ss_pred EEeCCCcEEEEecCCC
Q 005349 397 ISSSRGTSHLFAINPL 412 (701)
Q Consensus 397 sgS~dgTI~Iwdl~~~ 412 (701)
+||+=|.|.||+-++.
T Consensus 411 SGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 411 SGSDCGHIFIWDKKTG 426 (559)
T ss_pred ecCccceEEEEecchh
Confidence 9999999999998754
No 260
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.50 E-value=8.2e-05 Score=81.24 Aligned_cols=108 Identities=8% Similarity=0.217 Sum_probs=88.8
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
+++++..|.++--|+.+|+.++.|+.-.+.+..|+-+|=...+-+|-..|+ +-+|.-... ..|.+
T Consensus 224 L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSlWSP~sk--------------ePLvK 288 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSLWSPNSK--------------EPLVK 288 (545)
T ss_pred eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEecCCCCc--------------chHHH
Confidence 356678899999999999999999988899999999999999999999998 899986543 22222
Q ss_pred EeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 374 l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
+. .+...|.+||+.++|+|+||++.|..++|||+..+....+.
T Consensus 289 iL--cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 289 IL--CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred HH--hcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence 21 12234999999999999999999999999999988644444
No 261
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.49 E-value=0.0012 Score=76.03 Aligned_cols=102 Identities=23% Similarity=0.338 Sum_probs=77.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCC------C---cEEEEEEcCCCCCCCCCccCCC
Q 005349 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ------G---HNINIFKIIPGILGTSSACDAG 365 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~d------G---t~I~Iwdl~~~~~~~~s~~~~~ 365 (701)
+-+.+.|+|.|+|+.++..-+.|..|++.|.+|.|--... |+|.+.. | +.+.|-|+++|.
T Consensus 441 AvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGl---------- 509 (1062)
T KOG1912|consen 441 AVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGL---------- 509 (1062)
T ss_pred EeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEccccc----------
Confidence 4567889999999999999999999999999999976655 4444321 0 125567787761
Q ss_pred CceeEEEEEe--ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 366 TSYVHLYRLQ--RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 366 ~~~~~l~~l~--rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
-..|| ++.....|..|.-|.-++|||..-.|.-+.|||+.+.
T Consensus 510 -----sk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 510 -----SKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred -----ccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 12232 4555566999999999999999999999999999653
No 262
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.00034 Score=77.80 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=82.2
Q ss_pred cccccCCCCeEEEEECCCCcEEEEee-cCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCcee
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDP--SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 369 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~-~H~~~Is~laFSP--dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~ 369 (701)
.++++++|-.+.|||.-..+++..+. +|+..|.+++|=| +.++++||..|.. |+|||+.....+. .++.--...
T Consensus 64 lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~-i~lfdl~~~~~~~--~d~~~~~~~ 140 (758)
T KOG1310|consen 64 LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL-IKLFDLDSSKEGG--MDHGMEETT 140 (758)
T ss_pred EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce-EEEEecccccccc--cccCccchh
Confidence 35677888999999999888888887 9999999999999 5778999999965 9999997531000 000000001
Q ss_pred EEEEEeccCCcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCC
Q 005349 370 HLYRLQRGLTNAVIQDISFSDDS-NWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 370 ~l~~l~rG~~~a~I~~iaFSpDg-~~lAsgS~dgTI~Iwdl~~ 411 (701)
+.+ +-+..+|..|+-.|++ ..+-+++.||||+-+|+..
T Consensus 141 ~~~----~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 141 RCW----SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred hhh----hhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 111 2222347889999998 7888999999999999964
No 263
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.44 E-value=0.0043 Score=66.09 Aligned_cols=100 Identities=20% Similarity=0.371 Sum_probs=77.4
Q ss_pred cCCCCeEEEEEC--CCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 297 ADNVGMVIVRDI--VSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 297 ~~~dG~V~IwDl--~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
+...|.|.+-.+ ..-.++.++++|..+|.+++++|.-.+|.++..|- .+.+||+.-. ....|++
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~-~vi~wdigg~-------------~g~~~el 236 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDH-SVIMWDIGGR-------------KGTAYEL 236 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccC-ceEEEeccCC-------------cceeeee
Confidence 344555555433 34568899999999999999999999999999995 4899998643 1234555
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
+ |+ +..|+.++.-+--+.+.+++.||.|-+|+++-.
T Consensus 237 ~-gh-~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 237 Q-GH-NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred c-cc-hhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 4 33 346888888888899999999999999999754
No 264
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.41 E-value=0.00062 Score=81.84 Aligned_cols=96 Identities=14% Similarity=0.285 Sum_probs=73.4
Q ss_pred EECCCCcEEEEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEE
Q 005349 306 RDIVSKNVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ 384 (701)
Q Consensus 306 wDl~s~~~i~~~~~H~~~Is~laFSPdG-~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~ 384 (701)
|.. .|..++++..|...|..++.++.. .+|+|||.||+ ||||++..-. +... ....++.|.. ...++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt-VKvW~~~k~~-~~~~----s~rS~ltys~----~~sr~~ 1102 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT-VKVWNLRKLE-GEGG----SARSELTYSP----EGSRVE 1102 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCce-EEEeeehhhh-cCcc----eeeeeEEEec----cCCceE
Confidence 443 367899999999999999998864 99999999998 9999987642 1100 0011333333 223589
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 385 DISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 385 ~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
++.+.+.|..+|.++.||.|++++++.+
T Consensus 1103 ~vt~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1103 KVTMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred EEEeccCCCeEEEEcCCCeEEEEEcccc
Confidence 9999999999999999999999999875
No 265
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.41 E-value=0.0034 Score=66.78 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=54.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe---c--------cCCcccEEEEEEcC
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---R--------GLTNAVIQDISFSD 390 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~---r--------G~~~a~I~~iaFSp 390 (701)
+.|+.++||++|+|++|-+-- + ++|||+.... .+ ...|.++ | ...-..-..++||-
T Consensus 273 sSISDvKFs~sGryilsRDyl-t-vk~wD~nme~-~p----------v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 273 SSISDVKFSHSGRYILSRDYL-T-VKLWDLNMEA-KP----------VETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred hhhhceEEccCCcEEEEeccc-e-eEEEeccccC-Cc----------ceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 589999999999999997654 4 9999995431 00 1222221 1 00000124689999
Q ss_pred CCCEEEEEeCCCcEEEEecCCC
Q 005349 391 DSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 391 Dg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
++.++++||-..-.|+|++..+
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CcceEecccccceEEEecCCCC
Confidence 9999999999999999997543
No 266
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.32 E-value=0.00062 Score=46.34 Aligned_cols=39 Identities=26% Similarity=0.663 Sum_probs=34.8
Q ss_pred CcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEE
Q 005349 311 KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFK 350 (701)
Q Consensus 311 ~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwd 350 (701)
++++..+.+|...|.+++|++++.++++++.||+ +++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 3467788899999999999999999999999997 89996
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.30 E-value=0.076 Score=58.36 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=55.9
Q ss_pred CCCeEEEEECCCCcEEEEeecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~-~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
.+|.|..+|..+++.+..+..-. ....+... .|.+|.+++.+|. +.+||..++ +.++++.-+
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~tG--------------~~~~~~~~~ 349 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSREDG--------------SFVARLKTD 349 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCCC--------------CEEEEEEcC
Confidence 46788888888887776553211 11222222 4678888999997 899998887 566665422
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005349 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 378 ~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwd 408 (701)
.. .....-++. ++ .|..++.||+|+.|.
T Consensus 350 ~~-~~~~sp~~~-~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 350 GS-GIASPPVVV-GD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred CC-ccccCCEEE-CC-EEEEEeCCceEEEeC
Confidence 11 111222222 43 577899999998873
No 268
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.27 E-value=0.0019 Score=68.30 Aligned_cols=86 Identities=17% Similarity=0.250 Sum_probs=67.1
Q ss_pred CCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec
Q 005349 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGIL-LVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~l-LaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r 376 (701)
..+++|.+|++....--..+..-..+++++++||||+. |.|.+.|-+ |.||.+.+. .+.+ +.
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lr-iTVWSL~t~------------~~~~---~~- 130 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLR-ITVWSLNTQ------------KGYL---LP- 130 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeE-EEEEEeccc------------eeEE---ec-
Confidence 45789999999988877888888899999999999965 555556654 999999875 1122 22
Q ss_pred cCCcccEEEEEEcCCCCEEEEEeCC
Q 005349 377 GLTNAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 377 G~~~a~I~~iaFSpDg~~lAsgS~d 401 (701)
+..+.+..++|.|||++.|..+.+
T Consensus 131 -~pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 131 -HPKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred -ccccCceeEEECCCCceeeeeecc
Confidence 233458999999999999999876
No 269
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.27 E-value=0.2 Score=50.63 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=42.0
Q ss_pred cEEEEEECCCCcEEEEEecC---CCEE--EEEecCCEEEEEeCCEEEEEECCCCceeEEEec
Q 005349 117 TVVHFYSLRSQSYVHMLKFR---SPIY--SVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~---s~V~--sV~~s~~~LaVa~~~~I~iwDl~t~~~~~tl~t 173 (701)
++|..||+++|+.+.+..+. .... .+.-++++++...++.|++||+.|++.+.+...
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~ 64 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL 64 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec
Confidence 78999999999999999872 2222 222234444556889999999999998777654
No 270
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.25 E-value=0.0024 Score=72.36 Aligned_cols=91 Identities=15% Similarity=0.206 Sum_probs=68.6
Q ss_pred EEEEECCCCc--EEEEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 303 VIVRDIVSKN--VIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 303 V~IwDl~s~~--~i~~~~-~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
-.+|++..++ .+...+ ...+.|.|.+++|+.+.|+.|..||. |.+||...+. .+..+.
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~-------------t~~~ka----- 298 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTRGV-------------TLLAKA----- 298 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcCCCe-------------eeeeee-----
Confidence 3456765543 222222 67789999999999999999999997 8999987650 111111
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
.-....++|+|||..|++|+..|.+.+||+.-.
T Consensus 299 ~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 299 EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 123678999999999999999999999998653
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.24 E-value=0.0037 Score=68.83 Aligned_cols=104 Identities=19% Similarity=0.300 Sum_probs=78.5
Q ss_pred cCCCC-eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe
Q 005349 297 ADNVG-MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (701)
Q Consensus 297 ~~~dG-~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~ 375 (701)
+..|| .+-|+|..+++. ..+...-+.|-+|+.+|||++++.|-.... |-+.|+.++ ..+.+-+-+
T Consensus 377 gt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~e-l~vididng------------nv~~idkS~ 442 (668)
T COG4946 377 GTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFE-LWVIDIDNG------------NVRLIDKSE 442 (668)
T ss_pred eccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceE-EEEEEecCC------------CeeEecccc
Confidence 45666 899999998754 667777789999999999999999887765 677788877 223332222
Q ss_pred ccCCcccEEEEEEcCCCCEEEEEeCCC----cEEEEecCCCCCceeec
Q 005349 376 RGLTNAVIQDISFSDDSNWIMISSSRG----TSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 376 rG~~~a~I~~iaFSpDg~~lAsgS~dg----TI~Iwdl~~~g~~~~~~ 419 (701)
. +-|.+++|+|+++|+|-+--+| .|||||+.. +....+.
T Consensus 443 ~----~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~vT 485 (668)
T COG4946 443 Y----GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYDVT 485 (668)
T ss_pred c----ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEEec
Confidence 2 3499999999999999887765 699999964 3455443
No 272
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0017 Score=67.80 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=75.6
Q ss_pred cCCCCeEEEEECCCCcE--EEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 297 ADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~--i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
+...|.+.+-+...... ++..++|.-++...+|+. +-.++.||++||. +..||++-. ...++.
T Consensus 139 s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p-------------~~~i~~ 204 (339)
T KOG0280|consen 139 SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIP-------------KTFIWH 204 (339)
T ss_pred EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCC-------------cceeee
Confidence 34456666544444433 347889999999999998 4578999999997 899999832 034444
Q ss_pred EeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCce
Q 005349 374 LQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSV 416 (701)
Q Consensus 374 l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~~g~~~ 416 (701)
-.+-++ +-|.+|.=|| +..+|++|+-|.+|++||...-+.+.
T Consensus 205 n~kvH~-~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 205 NSKVHT-SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL 247 (339)
T ss_pred cceeee-cceEEEecCCCCCceEEEeccccceeeeehhcccCcc
Confidence 223233 3488887776 89999999999999999998655443
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.14 E-value=0.0059 Score=66.88 Aligned_cols=98 Identities=10% Similarity=0.050 Sum_probs=74.3
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~---------dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
+.|.|.|..+++.+..+..-..|-. + +||||+.|..|.. +...|.|||+.+. ..+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--------------~~~ 90 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--------------LPI 90 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--------------cEE
Confidence 7899999999999999985444433 4 9999999988887 5556999999987 445
Q ss_pred EEEeccCC-----cccEEEEEEcCCCCEEEEEe-C-CCcEEEEecCCCCC
Q 005349 372 YRLQRGLT-----NAVIQDISFSDDSNWIMISS-S-RGTSHLFAINPLGG 414 (701)
Q Consensus 372 ~~l~rG~~-----~a~I~~iaFSpDg~~lAsgS-~-dgTI~Iwdl~~~g~ 414 (701)
.++.-+.. ...-..+++||||++|.+.. + +..|-|.|+....-
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv 140 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF 140 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE
Confidence 55542211 11245799999999999877 4 68999999987543
No 274
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.14 E-value=0.00051 Score=73.62 Aligned_cols=100 Identities=13% Similarity=0.140 Sum_probs=72.4
Q ss_pred EEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCC
Q 005349 313 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 392 (701)
Q Consensus 313 ~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg 392 (701)
+.+.+.+|.+-|++|.||.+|++||+|++|-+ .+||.+....... ..+.+ .+...++...|.|++|.-..
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~-~~~W~~de~~~~k--------~~KPI-~~~~~~H~SNIF~L~F~~~N 117 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMH-GRVWNVDELMVRK--------TPKPI-GVMEHPHRSNIFSLEFDLEN 117 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcce-eeeechHHHHhhc--------CCCCc-eeccCccccceEEEEEccCC
Confidence 34566799999999999999999999999977 8999875431000 00111 22222233459999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCCceeecCCCC
Q 005349 393 NWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (701)
Q Consensus 393 ~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~ 423 (701)
++|.+|..+++|.+-|+.+...... ..|.+
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~qsi~V-~~~~~ 147 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQSIYV-ANENN 147 (609)
T ss_pred eeEecCCCcceeEeeecccceeeee-ecccC
Confidence 9999999999999999987644433 34444
No 275
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.14 E-value=0.07 Score=57.43 Aligned_cols=99 Identities=18% Similarity=0.283 Sum_probs=68.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC-CC
Q 005349 324 ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS-RG 402 (701)
Q Consensus 324 Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~-dg 402 (701)
+-+..|+|+|++|++.+-.-..|.+|++..+.. .....+.+..|.- -.-|+|+|++++.-..+. ++
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L----------~~~~~~~v~~G~G---PRHi~FHpn~k~aY~v~EL~s 213 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKL----------TPADPAEVKPGAG---PRHIVFHPNGKYAYLVNELNS 213 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCcc----------ccccccccCCCCC---cceEEEcCCCcEEEEEeccCC
Confidence 667889999999999986544599999986611 0011223333432 457999999999877665 99
Q ss_pred cEEEEecCCCCCc-eeecCCCCCcccccCCCccc
Q 005349 403 TSHLFAINPLGGS-VNFQPTDANFTTKHGAMAKS 435 (701)
Q Consensus 403 TI~Iwdl~~~g~~-~~~~~H~~~~~~~~~~~~~~ 435 (701)
||-+|.+++..+. -.++.+...+..|++-.+-.
T Consensus 214 tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a 247 (346)
T COG2706 214 TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA 247 (346)
T ss_pred EEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence 9999999997544 46788776666655444433
No 276
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.96 E-value=0.022 Score=67.30 Aligned_cols=183 Identities=15% Similarity=0.143 Sum_probs=124.0
Q ss_pred CcEEEEEECCCCcEEEEEecCC-CEEEEEecCCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCccccee
Q 005349 116 PTVVHFYSLRSQSYVHMLKFRS-PIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 193 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~tL~f~s-~V~sV~~s~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~pi 193 (701)
+..+--+|+++.+..++....+ .|.-|+-|.+++.. ...++|.+-|..+.+.++++.+|... ...|
T Consensus 156 Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s------------iSDf 223 (1118)
T KOG1275|consen 156 QEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS------------ISDF 223 (1118)
T ss_pred hhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc------------eeee
Confidence 4567778999999988888754 68888888787776 46789999999999999999988531 1223
Q ss_pred eeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCCC
Q 005349 194 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 273 (701)
Q Consensus 194 Als~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~ 273 (701)
.+....|+.++. ++| .|
T Consensus 224 Dv~GNlLitCG~------S~R-------------------------------------------------~~-------- 240 (1118)
T KOG1275|consen 224 DVQGNLLITCGY------SMR-------------------------------------------------RY-------- 240 (1118)
T ss_pred eccCCeEEEeec------ccc-------------------------------------------------cc--------
Confidence 332222222110 000 00
Q ss_pred CCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEEcC
Q 005349 274 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKII 352 (701)
Q Consensus 274 ~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd-G~lLaTaS~dGt~I~Iwdl~ 352 (701)
.-.-|--|+|||++.-+.+.-+.-|.+| .-+.|.|. -+.+|.+|..|. +.+-|..
T Consensus 241 ----------------------~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~ 296 (1118)
T KOG1275|consen 241 ----------------------NLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTA 296 (1118)
T ss_pred ----------------------cccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeecccc
Confidence 0113456999999998887777777766 66899997 567888888887 7887744
Q ss_pred CCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 353 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 353 ~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
+.. +. .....++.. ...-|..+++|+.|+.+|.|..+|-|++|.=
T Consensus 297 ~ls--NP-----~~~~~~v~p-----~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 297 TLS--NP-----PAGVKMVNP-----NGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccC--CC-----ccceeEEcc-----CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 320 00 001111111 1122889999999999999999999999983
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.93 E-value=0.81 Score=56.67 Aligned_cols=97 Identities=14% Similarity=0.209 Sum_probs=64.2
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV--QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~--dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
-.++||+-+ |....+-+.-.+-=.+|+|-|+|.++|+... +.+.|..|.-+ | ..+--+.++...
T Consensus 237 R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-G------------LrhgeF~l~~~~ 302 (928)
T PF04762_consen 237 RVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-G------------LRHGEFTLRFDP 302 (928)
T ss_pred eEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-C------------cEeeeEecCCCC
Confidence 589999966 5443333322233346899999999999876 22445566532 2 112234554322
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
....|..|+|++|+..||..-.|. |.+|-.+.|
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 334599999999999999987654 999988765
No 278
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.91 E-value=0.0054 Score=64.77 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=78.6
Q ss_pred ccCCCCeEEEEECCCC---cEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 296 DADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~---~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
.+.+...|.||..... +...+|+.|...|+.|+++|.+..|+||+.|.+ -.||....+..+. .. -.|.
T Consensus 27 v~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn-ayVw~~~~~~~Wk-------pt-lvLl 97 (361)
T KOG1523|consen 27 VSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN-AYVWTQPSGGTWK-------PT-LVLL 97 (361)
T ss_pred eccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC-ccccccCCCCeec-------cc-eeEE
Confidence 3445568999887665 478899999999999999999999999999976 7999985441111 00 1233
Q ss_pred EEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
++.| ...+|.|||.++.||+||.-..|-||=++.
T Consensus 98 RiNr-----AAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 98 RINR-----AATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred Eecc-----ceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 3333 378999999999999999999999998753
No 279
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.78 E-value=0.018 Score=67.99 Aligned_cols=101 Identities=14% Similarity=0.214 Sum_probs=70.2
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
..++..|..+.+-.+|+... ....+..-..+.|..++-- +.+.+|++.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~-~e~r~~~v~a~~v~imR~N-----------------nr~lf~G~t-------------- 195 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTE-KETRTTNVSASGVTIMRYN-----------------NRNLFCGDT-------------- 195 (1118)
T ss_pred cceeecchhhheeeeecccc-eeeeeeeccCCceEEEEec-----------------CcEEEeecc--------------
Confidence 55667777888888998762 2233333334457766631 123445542
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecCCEEEEE----------eCCEEEEEECCCCc
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAIC----------QAAQVHCFDAATLE 166 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~~~LaVa----------~~~~I~iwDl~t~~ 166 (701)
.++|-+-|+++.+.+|++.. .+.|.++...+++|+.+ .|.-|.|||+++++
T Consensus 196 ------------------~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 196 ------------------RGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR 257 (1118)
T ss_pred ------------------cceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhh
Confidence 17899999999999999985 66899999988888765 23458999999887
Q ss_pred ee
Q 005349 167 IE 168 (701)
Q Consensus 167 ~~ 168 (701)
.+
T Consensus 258 al 259 (1118)
T KOG1275|consen 258 AL 259 (1118)
T ss_pred cc
Confidence 43
No 280
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.78 E-value=0.34 Score=52.03 Aligned_cols=102 Identities=22% Similarity=0.253 Sum_probs=62.7
Q ss_pred eEEEEECCCCcEEEE--e--ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE---
Q 005349 302 MVIVRDIVSKNVIAQ--F--RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL--- 374 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~--~--~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l--- 374 (701)
.+.+.|..+++.+.+ + .-|.-+|..|++++||+.+.-.-.+|-. ++..+-- .-...+....+..+
T Consensus 139 sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~---~~~~PLv-----a~~~~g~~~~~~~~p~~ 210 (305)
T PF07433_consen 139 SLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP---GDAPPLV-----ALHRRGGALRLLPAPEE 210 (305)
T ss_pred ceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCC---CccCCeE-----EEEcCCCcceeccCChH
Confidence 466678888988877 5 2488899999999999988776665531 1211110 00000000011111
Q ss_pred -eccCCcccEEEEEEcCCCCEEEEEeCCC-cEEEEecCCC
Q 005349 375 -QRGLTNAVIQDISFSDDSNWIMISSSRG-TSHLFAINPL 412 (701)
Q Consensus 375 -~rG~~~a~I~~iaFSpDg~~lAsgS~dg-TI~Iwdl~~~ 412 (701)
.+.+.. -|-+|||++|+.++|++|-+| .+.+||..+.
T Consensus 211 ~~~~l~~-Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 211 QWRRLNG-YIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred HHHhhCC-ceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 011111 278999999999998888765 6899998764
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.75 E-value=0.12 Score=53.80 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=59.3
Q ss_pred cccccCCCCeEEEEECCCCcEEEE-----eecCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEEcCCCCCCCCCccCCC
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQ-----FRAHKSPISALCFDPSGI--LLVTASVQGHNINIFKIIPGILGTSSACDAG 365 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~-----~~~H~~~Is~laFSPdG~--lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~ 365 (701)
.|+.+.+||.+.|||++....... -..|.+.|..+.|+|-|. +|.-.-.-+. ++|-|++++..
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~~~--------- 286 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNYVN--------- 286 (344)
T ss_pred eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccCce---------
Confidence 567788999999999997543222 236889999999998665 3333333344 78999887610
Q ss_pred CceeEEE---EEeccCCcccEEEEEEcCCCCEEEEEeCC
Q 005349 366 TSYVHLY---RLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 366 ~~~~~l~---~l~rG~~~a~I~~iaFSpDg~~lAsgS~d 401 (701)
++.+. +..|.+....|..-+|+.++.-+-+.+.+
T Consensus 287 --~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 287 --HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred --eeEEecCccccccccccccccccccCCCcccccccch
Confidence 01110 01122222237777777766655555443
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.68 E-value=0.32 Score=54.81 Aligned_cols=81 Identities=23% Similarity=0.187 Sum_probs=48.7
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCC-Cc-EEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~d-Gt-~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
..|.++|+.+++. ..+..+........|+|||+.|+-.+.. |. .|.+.|+..+ ..+.+ .. .|.
T Consensus 257 ~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g------------~~~rl-t~-~g~ 321 (419)
T PRK04043 257 PDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG------------SVEQV-VF-HGK 321 (419)
T ss_pred cEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC------------CeEeC-cc-CCC
Confidence 5688889887753 4444443323446899999977766643 33 3555565544 11221 11 122
Q ss_pred CcccEEEEEEcCCCCEEEEEeCC
Q 005349 379 TNAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~d 401 (701)
...+|||||++|+..+..
T Consensus 322 -----~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 322 -----NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred -----cCceECCCCCEEEEEEcC
Confidence 124899999999987764
No 283
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.54 E-value=0.28 Score=55.09 Aligned_cols=90 Identities=13% Similarity=0.270 Sum_probs=62.8
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS-~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
..+.|+++....+ .....-.++|...+|+|.+..+++.+ ..-..+.+||++.. ..+.+..+
T Consensus 255 snLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---------------l~~~~Pe~-- 316 (561)
T COG5354 255 SNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---------------LRFYFPEQ-- 316 (561)
T ss_pred ceEEEEeeccccc-ceeccccccceeeeecccCCceeEEecccccceeecccccc---------------eEEecCCc--
Confidence 5788899885433 33335578999999999999999988 33334889998753 22333222
Q ss_pred cccEEEEEEcCCCCEEEEEeCC---CcEEEEecC
Q 005349 380 NAVIQDISFSDDSNWIMISSSR---GTSHLFAIN 410 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~d---gTI~Iwdl~ 410 (701)
.=..+.|||.++|+..++-| |.|-|||..
T Consensus 317 --~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 317 --KRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred --ccccccccCcccEEEEecCCccccceEEeccC
Confidence 12347799999999987765 568888864
No 284
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0064 Score=65.94 Aligned_cols=96 Identities=20% Similarity=0.184 Sum_probs=74.5
Q ss_pred EEEEECCCCcEEEEeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcc
Q 005349 303 VIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 381 (701)
Q Consensus 303 V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~-lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a 381 (701)
|++.+-.+.+.+..+..|..-|..|+|||... +|..+|.+.+ |+|+|+.+. .+...|..+ .
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~------------~~vssy~a~-----~ 236 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETS------------CVVSSYIAY-----N 236 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccc------------eeeeheecc-----C
Confidence 77777777777777889999999999999877 7888888755 999999986 233444442 3
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCCCce
Q 005349 382 VIQDISFSDDSN-WIMISSSRGTSHLFAINPLGGSV 416 (701)
Q Consensus 382 ~I~~iaFSpDg~-~lAsgS~dgTI~Iwdl~~~g~~~ 416 (701)
.++++||.-|.. +|..|-.+|.|.|||+....++.
T Consensus 237 ~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 237 QIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred CceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence 499999998654 56677779999999998766554
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.24 E-value=0.78 Score=57.67 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=52.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec--cC----CcccEEEEEEcCCCCEEEE
Q 005349 324 ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR--GL----TNAVIQDISFSDDSNWIMI 397 (701)
Q Consensus 324 Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r--G~----~~a~I~~iaFSpDg~~lAs 397 (701)
...|+|+|||+.|..++.+.+.|++||+.++.. .....+.......++.+-. |. .-..-.+++|++||+.+++
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA 820 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA 820 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence 456999999996666666656699999876410 0000000000000111100 00 0001358999999999999
Q ss_pred EeCCCcEEEEecCC
Q 005349 398 SSSRGTSHLFAINP 411 (701)
Q Consensus 398 gS~dgTI~Iwdl~~ 411 (701)
-+.+++|++||...
T Consensus 821 Ds~N~rIrviD~~t 834 (1057)
T PLN02919 821 DSYNHKIKKLDPAT 834 (1057)
T ss_pred ECCCCEEEEEECCC
Confidence 99999999999865
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.18 E-value=0.96 Score=47.65 Aligned_cols=99 Identities=21% Similarity=0.274 Sum_probs=60.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCc----------EEEEEEcCCCCC-C---CCCccCCCCc--eeEEEEE-------ec
Q 005349 320 HKSPISALCFDPSGILLVTASVQGH----------NINIFKIIPGIL-G---TSSACDAGTS--YVHLYRL-------QR 376 (701)
Q Consensus 320 H~~~Is~laFSPdG~lLaTaS~dGt----------~I~Iwdl~~~~~-~---~~s~~~~~~~--~~~l~~l-------~r 376 (701)
+...|+++.|+|.-++|..|+..-. -+.-|++..+.+ . .....+-... ...+.++ ++
T Consensus 146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence 4679999999999888877753211 156787766522 1 1111110000 0111111 12
Q ss_pred cCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 377 G~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
+.....|..|+.||||+.||+...+|+|-||++........+
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 322334999999999999999999999999999765444433
No 287
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.14 E-value=1.9 Score=44.28 Aligned_cols=99 Identities=17% Similarity=0.145 Sum_probs=61.9
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCc
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~ 380 (701)
|.|..++.. ++... +...-..-+.|+|+|||+.|..+......|..|++.... .. ....+.+..+..+.
T Consensus 115 g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~-~~------~~~~~~~~~~~~~~-- 183 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTV-VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADG-GE------LSNRRVFIDFPGGP-- 183 (246)
T ss_dssp EEEEEEETT-SEEEE-EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTT-CC------EEEEEEEEE-SSSS--
T ss_pred cceEEECCC-CeEEE-EecCcccccceEECCcchheeecccccceeEEEeccccc-cc------eeeeeeEEEcCCCC--
Confidence 677777777 44332 222334568899999999877666555557888875430 00 00112233332221
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 381 AVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 381 a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
...-.+++..+|+..++.-..+.|.+++-.
T Consensus 184 g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 184 GYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp CEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred cCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 236789999999998888888999998865
No 288
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.10 E-value=0.4 Score=51.73 Aligned_cols=95 Identities=13% Similarity=0.178 Sum_probs=61.3
Q ss_pred CeEEEEECCCCc-EEEEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 301 GMVIVRDIVSKN-VIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 301 G~V~IwDl~s~~-~i~~~~-~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
..|.+|++...+ .+..-. .....|.+|..- +.+++.|+.... +.++..... ...+..+-|..
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~s-v~~~~~~~~-------------~~~l~~va~d~ 170 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKS-VSLLRYDEE-------------NNKLILVARDY 170 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSS-EEEEEEETT-------------TE-EEEEEEES
T ss_pred CEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccC-EEEEEEEcc-------------CCEEEEEEecC
Confidence 578888888776 332222 122255555544 568888888765 777755432 03455555544
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
.+..+.+++|-.|++.++.+..+|.++++..++
T Consensus 171 ~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 171 QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred CCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 455589999987778999999999999999964
No 289
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=96.00 E-value=0.021 Score=59.84 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=73.8
Q ss_pred cccCCCCeEEEEECC-CCcEEEE-eecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 295 PDADNVGMVIVRDIV-SKNVIAQ-FRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~-s~~~i~~-~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
-++++||.+.-||++ .++.+-+ .+-|+..|.++.-|| .+.+++|||.|.+ |++||.+.-. +.+
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~-------------kPl 247 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMG-------------KPL 247 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhccc-------------Ccc
Confidence 467899999999999 4455544 678999999999988 6999999999987 9999998530 222
Q ss_pred EEEeccCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCCCc
Q 005349 372 YRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 372 ~~l~rG~~~a~I~~iaFSpD-g~~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
.. +....-|+.|.++|- ...|..++...-.+|-+++..-.+
T Consensus 248 ~~---~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e 289 (339)
T KOG0280|consen 248 FK---AKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE 289 (339)
T ss_pred cc---CccccceEEEEecchhhhHHHHHHHhcCceEEEecccccc
Confidence 21 111234888888883 334455566666788887765444
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.98 E-value=0.039 Score=63.85 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=76.1
Q ss_pred cccCCCCeEEEEECCCC-cEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 295 PDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~-~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
++..-|-.|..||+.+- .++..+..-...-+.|+++- ++..||+ ..|+.|+|||++.+. ..++
T Consensus 131 atcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas--shg~~i~vwd~r~gs-------------~pl~ 195 (1081)
T KOG0309|consen 131 ATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS--SHGNDIFVWDLRKGS-------------TPLC 195 (1081)
T ss_pred eeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh--ccCCceEEEeccCCC-------------cceE
Confidence 34556778999999985 45666665455667899998 6777765 567789999998761 3455
Q ss_pred EEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCc
Q 005349 373 RLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
.+++ + .+.|+.+.|.. --..+.+.+.||||+.|+.++...+
T Consensus 196 s~K~-~-vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 196 SLKG-H-VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred Eecc-c-ceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 6654 3 35699999975 3446789999999999999865443
No 291
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=95.94 E-value=0.066 Score=67.46 Aligned_cols=116 Identities=15% Similarity=0.187 Sum_probs=85.5
Q ss_pred ccccCCCCeEEEEECCCCcEEEEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCC-----CC---------
Q 005349 294 FPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-----GT--------- 358 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~i~~~~-~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~-----~~--------- 358 (701)
+.++.+||.|++|....++.+..++ +-.+.|+.+.|+.+|..+..++.||. +-+|.+.+.+. ++
T Consensus 2223 Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~-l~l~q~~pk~~~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2223 YLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD-LSLWQASPKPYTSWQCHNKALSDFRFI 2301 (2439)
T ss_pred EEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCc-eeecccCCcceeccccCCccccceeee
Confidence 4578899999999999998888887 33489999999999999999999997 89999876421 00
Q ss_pred ---------CCc----cCCC----CceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 005349 359 ---------SSA----CDAG----TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (701)
Q Consensus 359 ---------~s~----~~~~----~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~ 414 (701)
++. ..|. +...++++. | ..-++++++-|.-+.|.+|+.+|.|.|||+....-
T Consensus 2302 ~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~---H-~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2302 GSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC---H-DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred ehhhhccccCCCCCcccchhcccCcccceeeee---c-CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 000 0010 111122222 1 12378999999999999999999999999976443
No 292
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.92 E-value=0.77 Score=49.63 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=56.6
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCc
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~ 380 (701)
|.|..+|. .+..+..+..|-.-=+.|+|||||+.|..++.....|.-|++... .+.. . . ...+.... ...
T Consensus 143 G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~-~g~~--~----~-~~~~~~~~-~~~ 212 (307)
T COG3386 143 GSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA-TGPI--G----G-RRGFVDFD-EEP 212 (307)
T ss_pred ceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc-cCcc--C----C-cceEEEcc-CCC
Confidence 54555554 466666666665555779999999999998887665666666531 0000 0 0 11111111 111
Q ss_pred ccEEEEEEcCCCCEEEEEeCCC-cEEEEecC
Q 005349 381 AVIQDISFSDDSNWIMISSSRG-TSHLFAIN 410 (701)
Q Consensus 381 a~I~~iaFSpDg~~lAsgS~dg-TI~Iwdl~ 410 (701)
..--.++...||++-+++-.+| .|++|+-.
T Consensus 213 G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 213 GLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred CCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 1234567777777775444443 77777765
No 293
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.022 Score=63.76 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=79.2
Q ss_pred cccccCCCCeEEEEECCCC-------cEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCC---------
Q 005349 293 HFPDADNVGMVIVRDIVSK-------NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL--------- 356 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~-------~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~--------- 356 (701)
.|+++..|.+|++|.++.. .+.-+.++|+.+|..+.|-.|-+++|+++ |- |++||-.-+..
T Consensus 749 SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD--~g-iHlWDPFigr~Laq~~dapk 825 (1034)
T KOG4190|consen 749 SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCD--GG-IHLWDPFIGRLLAQMEDAPK 825 (1034)
T ss_pred ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeecc--Cc-ceeecccccchhHhhhcCcc
Confidence 4567889999999998752 35566779999999999999999998764 54 89999644311
Q ss_pred -CCCCc-------------cC------------CCCceeEEEEEec-cCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 357 -GTSSA-------------CD------------AGTSYVHLYRLQR-GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 357 -~~~s~-------------~~------------~~~~~~~l~~l~r-G~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
+.... .+ ......+-++.-. ...++.+.+++..+.|+|+|++-+.|+|-+.|.
T Consensus 826 ~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDa 905 (1034)
T KOG4190|consen 826 EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDA 905 (1034)
T ss_pred cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEec
Confidence 00000 00 0000111111110 112344789999999999999999999999998
Q ss_pred CCCC
Q 005349 410 NPLG 413 (701)
Q Consensus 410 ~~~g 413 (701)
..+.
T Consensus 906 R~G~ 909 (1034)
T KOG4190|consen 906 RNGK 909 (1034)
T ss_pred CCCc
Confidence 7643
No 294
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.91 E-value=0.053 Score=62.85 Aligned_cols=113 Identities=13% Similarity=0.096 Sum_probs=74.7
Q ss_pred CCeEEEEECCCC-cEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 300 VGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 300 dG~V~IwDl~s~-~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
...|.|||+..+ .++..+++|...|+.+.|+. --..+.+++.||+ ++.||-..... .--++ -
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt~------------e~~~~---v 242 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKSTT------------ESKRT---V 242 (1081)
T ss_pred CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeeccccccc------------cccee---c
Confidence 356999999876 58889999999999999998 4567889999998 89999754310 11111 1
Q ss_pred CCcccEEEEEEcC--CCCEEEEEeCCCcEEEEecC---------CC-CCceeecCCCCCcccc
Q 005349 378 LTNAVIQDISFSD--DSNWIMISSSRGTSHLFAIN---------PL-GGSVNFQPTDANFTTK 428 (701)
Q Consensus 378 ~~~a~I~~iaFSp--Dg~~lAsgS~dgTI~Iwdl~---------~~-g~~~~~~~H~~~~~~~ 428 (701)
.+...|+--+|-| +|.++.-.-.+..+++++.. +. ....+|.+|++.+.+|
T Consensus 243 tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eF 305 (1081)
T KOG0309|consen 243 TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEF 305 (1081)
T ss_pred cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHH
Confidence 2334466667776 55555433334466665443 22 2334788998877665
No 295
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.44 Score=52.17 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=42.9
Q ss_pred CCcEEEEEECCCCcEEEEEecCCCEEEEEec---CCEE-EEEeCCEEEEEECCCCc
Q 005349 115 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVV-AICQAAQVHCFDAATLE 166 (701)
Q Consensus 115 ~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s---~~~L-aVa~~~~I~iwDl~t~~ 166 (701)
..++|+|.|++|..++.+......+++.+|. .+++ |.-..+.|+|||++.-+
T Consensus 214 l~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 214 LGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred cCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 3489999999999999999989999999995 3443 44567899999999754
No 296
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.74 E-value=3.4 Score=43.70 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=31.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 005349 319 AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (701)
Q Consensus 319 ~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~ 354 (701)
.-...|..|+.||||++||+....|. |-+|++..-
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~iPsL 261 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGS-LSLWEIPSL 261 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCe-EEEEecCcc
Confidence 34578999999999999999999998 899999764
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.60 E-value=0.14 Score=53.38 Aligned_cols=100 Identities=11% Similarity=-0.013 Sum_probs=65.7
Q ss_pred CCCeEEEE--ECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec
Q 005349 299 NVGMVIVR--DIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (701)
Q Consensus 299 ~dG~V~Iw--Dl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r 376 (701)
.|.++++. +..+.+...+++. -.+.++++|+|++++++.++-.. |-.|.+... ...++. .+-
T Consensus 136 ndht~k~~~~~~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgds~~-Vf~y~id~~------------sey~~~-~~~ 199 (344)
T KOG4532|consen 136 NDHTGKTMVVSGDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGDSRR-VFRYAIDDE------------SEYIEN-IYE 199 (344)
T ss_pred CCcceeEEEEecCcccceeeccc--cceeeeEEcCCCceEEEecCCCc-ceEEEeCCc------------cceeee-eEe
Confidence 44444444 4444443333332 23889999999999999887655 677777653 112222 222
Q ss_pred cCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 005349 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (701)
Q Consensus 377 G~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~ 414 (701)
..+...=.+.+||.....+|+++.||++-|||+..-+-
T Consensus 200 a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 200 APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred cccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 22222356799999999999999999999999976543
No 298
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.051 Score=62.20 Aligned_cols=76 Identities=18% Similarity=0.335 Sum_probs=62.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe-ccCCcccE-EEEEEcCCCCEEEEEeC
Q 005349 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RGLTNAVI-QDISFSDDSNWIMISSS 400 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~-rG~~~a~I-~~iaFSpDg~~lAsgS~ 400 (701)
.|--+-|+|.=.++|++-.+|+ +-|.++. . .+++++. +|.. + .++||.|||+.||.|-.
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~--------------qRlwtip~p~~~---v~~sL~W~~DGkllaVg~k 82 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGE-LLIHRLN-W--------------QRLWTIPIPGEN---VTASLCWRPDGKLLAVGFK 82 (665)
T ss_pred ceEEEEEcCccchhheeccCCc-EEEEEec-c--------------ceeEeccCCCCc---cceeeeecCCCCEEEEEec
Confidence 5666889999999999999998 6787776 3 5677775 4432 4 49999999999999999
Q ss_pred CCcEEEEecCCCCCcee
Q 005349 401 RGTSHLFAINPLGGSVN 417 (701)
Q Consensus 401 dgTI~Iwdl~~~g~~~~ 417 (701)
||||+|-|+.+.+....
T Consensus 83 dG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 83 DGTIRLHDVEKGGRLVS 99 (665)
T ss_pred CCeEEEEEccCCCceec
Confidence 99999999998876655
No 299
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.28 E-value=0.031 Score=37.54 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=26.0
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005349 381 AVIQDISFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 381 a~I~~iaFSpDg~~lAsgS~dgTI~Iwd 408 (701)
..|.+++|+++++++++++.|+++++|+
T Consensus 13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3599999999999999999999999996
No 300
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.28 E-value=0.016 Score=64.77 Aligned_cols=148 Identities=20% Similarity=0.232 Sum_probs=88.5
Q ss_pred EEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCC
Q 005349 313 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 392 (701)
Q Consensus 313 ~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg 392 (701)
.+..|.+|+..|.+++--.+..-+++||.|.+ +++|.+++...+ .+...|.++.. . +...|.++.|=.|-
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKT-VKLWSik~EgD~-------~~tsaCQfTY~-a-Hkk~i~~igfL~~l 796 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKT-VKLWSIKPEGDE-------IGTSACQFTYQ-A-HKKPIHDIGFLADL 796 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCce-EEEEEeccccCc-------cccceeeeEhh-h-ccCcccceeeeecc
Confidence 45678899999999877777888999999987 999999875211 11113444442 2 22359999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCCceee--c-CCCC--C---ccccc------CCCcccccccCCCCCCCCCCccccc-cCC
Q 005349 393 NWIMISSSRGTSHLFAINPLGGSVNF--Q-PTDA--N---FTTKH------GAMAKSGVRWPPNLGLQMPNQQSLC-ASG 457 (701)
Q Consensus 393 ~~lAsgS~dgTI~Iwdl~~~g~~~~~--~-~H~~--~---~~~~~------~~~~~~~~~~~~~s~~~~~~q~~l~-~~~ 457 (701)
++++++ ||-||+||-=-..-...+ . .|+. . +...+ +-+..+.+++-....-+|.++=..+ +++
T Consensus 797 r~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~ 874 (1034)
T KOG4190|consen 797 RSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG 874 (1034)
T ss_pred ceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence 998765 899999984211100001 0 0110 0 00000 2234445555555556676664444 456
Q ss_pred CCeeeeEeEEEecCC
Q 005349 458 PPVTLSVVSRIRNGN 472 (701)
Q Consensus 458 ~~~~~s~v~~i~~~~ 472 (701)
|+.+.-.++--..||
T Consensus 875 Pna~~R~iaVa~~GN 889 (1034)
T KOG4190|consen 875 PNALTRAIAVADKGN 889 (1034)
T ss_pred CchheeEEEeccCcc
Confidence 666665555545554
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=95.24 E-value=0.053 Score=58.06 Aligned_cols=104 Identities=14% Similarity=0.200 Sum_probs=71.4
Q ss_pred ccCCCCeEEEEECCCC----cEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeE
Q 005349 296 DADNVGMVIVRDIVSK----NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~----~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~ 370 (701)
.+...|.|.++|++.+ .-..+---|.+.|++|..-. ++.+|++.+.+|+ |++||++....+ +-
T Consensus 269 ~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~-----------~~ 336 (425)
T KOG2695|consen 269 NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGK-IKLYDLRATKCK-----------KS 336 (425)
T ss_pred ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCc-eeEeeehhhhcc-----------cc
Confidence 3567799999999875 22223335888999988777 7899999999998 999999764110 01
Q ss_pred EEEEeccCCccc-EEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 371 LYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 371 l~~l~rG~~~a~-I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
+.+. .||.+.. -.-+-..+....++++++|--.+||.++..
T Consensus 337 V~qY-eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 337 VMQY-EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred eeee-ecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 2222 3543221 122334567778888999999999999763
No 302
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.16 E-value=0.39 Score=54.29 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=40.3
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEEEEecC--CEEEEEeCC----EEEEEECCCCc
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCSS--RVVAICQAA----QVHCFDAATLE 166 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~sV~~s~--~~LaVa~~~----~I~iwDl~t~~ 166 (701)
..+.++|+.+++....+.|...-..-+|++ +.|+.+.++ .|+++|+.+..
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN 273 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence 468999999999888888888777788874 777776543 79999999876
No 303
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.16 E-value=12 Score=46.60 Aligned_cols=74 Identities=7% Similarity=0.155 Sum_probs=51.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE-EEeccCCcccEEEEEEcC-CCCEEEE
Q 005349 320 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY-RLQRGLTNAVIQDISFSD-DSNWIMI 397 (701)
Q Consensus 320 H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~-~l~rG~~~a~I~~iaFSp-Dg~~lAs 397 (701)
....|..|+|++|++.||..-.| . |.+|-.... ++-|+ +++-. ....+..+.|+| +...|..
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~-~-vqLWt~~NY-------------HWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v 366 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLED-R-VQLWTRSNY-------------HWYLKQEIRFS-SSESVNFVKWDPEKPLRLHV 366 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecC-C-ceEEEeeCC-------------EEEEEEEEEcc-CCCCCCceEECCCCCCEEEE
Confidence 45678999999999999998766 3 899988764 12232 23211 122355599999 6677888
Q ss_pred EeCCCcEEEEec
Q 005349 398 SSSRGTSHLFAI 409 (701)
Q Consensus 398 gS~dgTI~Iwdl 409 (701)
.+.+|.+.++++
T Consensus 367 ~t~~g~~~~~~~ 378 (928)
T PF04762_consen 367 LTSNGQYEIYDF 378 (928)
T ss_pred EecCCcEEEEEE
Confidence 888888877655
No 304
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.15 E-value=0.12 Score=55.31 Aligned_cols=80 Identities=28% Similarity=0.330 Sum_probs=55.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc---CC-----------cccEEEEE
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG---LT-----------NAVIQDIS 387 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG---~~-----------~a~I~~ia 387 (701)
.-|+++.|+.+|.+||||+.+|+ +-+|.-.... .+.|.++.. |. ..+|..|.
T Consensus 26 diis~vef~~~Ge~LatGdkgGR-Vv~f~r~~~~-------------~~ey~~~t~fqshepEFDYLkSleieEKinkIr 91 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGR-VVLFEREKLY-------------KGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIR 91 (433)
T ss_pred cceeeEEeecccceEeecCCCCe-EEEeeccccc-------------ccceeeeeeeeccCcccchhhhhhhhhhhhhce
Confidence 46899999999999999999998 7788643320 011111111 11 12388899
Q ss_pred EcCCCC--EEEEEeCCCcEEEEecCCCCCc
Q 005349 388 FSDDSN--WIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 388 FSpDg~--~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
|-++++ .+...+.|.||++|.+...+..
T Consensus 92 w~~~~n~a~FLlstNdktiKlWKi~er~~k 121 (433)
T KOG1354|consen 92 WLDDGNLAEFLLSTNDKTIKLWKIRERGSK 121 (433)
T ss_pred ecCCCCccEEEEecCCcceeeeeeeccccc
Confidence 988665 5778889999999999765433
No 305
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.08 E-value=0.055 Score=60.95 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=64.7
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV----------QGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~----------dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
-|.+|--.+-..++.| .|. .|..+.|||..+||+|=|. +|+.+.|||+.+| ...
T Consensus 232 GI~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG--------------~lk 295 (698)
T KOG2314|consen 232 GIALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG--------------LLK 295 (698)
T ss_pred ceeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc--------------chh
Confidence 4778866655555555 454 6899999999999999763 5677999999998 222
Q ss_pred EEEe--ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 372 YRLQ--RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 372 ~~l~--rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
..|. ++.. ....-..||.|++|+|--.. .+|+||+..++
T Consensus 296 rsF~~~~~~~-~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf 336 (698)
T KOG2314|consen 296 RSFPVIKSPY-LKWPIFRWSHDDKYFARMTG-NSISIYETPSF 336 (698)
T ss_pred cceeccCCCc-cccceEEeccCCceeEEecc-ceEEEEecCce
Confidence 2221 1111 11334679999999998776 58999987653
No 306
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=95.06 E-value=0.36 Score=52.69 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=49.0
Q ss_pred cccccCCCCeEEEEECCCCcEEEEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~-~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~ 354 (701)
++.+++.|+.|+|-....--.+..|- +|+.-|+.++.-++ .+|+++|.|+| +++||+..+
T Consensus 165 ~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd~~sg 225 (390)
T KOG3914|consen 165 FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWDITSG 225 (390)
T ss_pred EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EEEEecccC
Confidence 34567788999997777666667766 79999999998764 55999999998 899999987
No 307
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=95.03 E-value=0.28 Score=57.46 Aligned_cols=99 Identities=17% Similarity=0.278 Sum_probs=74.6
Q ss_pred cccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC---CC-CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeE
Q 005349 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP---SG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP---dG-~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~ 370 (701)
+.++-.|.|.|||+..+..+..|..|..+|..|+|=| +. .+|+.-..-. .+-+|+..+| .+
T Consensus 83 AsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss-~lvLwntdtG--------------~k 147 (1062)
T KOG1912|consen 83 ASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSS-TLVLWNTDTG--------------EK 147 (1062)
T ss_pred EeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCc-EEEEEEccCC--------------ce
Confidence 3456679999999999999999999999999999977 33 2344333333 4899999988 56
Q ss_pred EEEEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecC
Q 005349 371 LYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 371 l~~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~ 410 (701)
+++...++. ...|+.|.| |.+.++.-+..|-+-+-+.-
T Consensus 148 ~Wk~~ys~~--iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 148 FWKYDYSHE--ILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred eeccccCCc--ceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 666543321 256689999 99999999999988777654
No 308
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.00 E-value=1.7 Score=48.31 Aligned_cols=57 Identities=7% Similarity=0.032 Sum_probs=42.3
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEE-EEe-cCCEEEEEeCCEEEEEECCCCceeEEEec
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYS-VRC-SSRVVAICQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~s-V~~-s~~~LaVa~~~~I~iwDl~t~~~~~tl~t 173 (701)
+.|.-+|.+||+.+-+.+....+.+ ... ...+++...+++|+.+|+.|++.+.+...
T Consensus 130 g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 6788899999999988887665442 122 34444446688999999999998877753
No 309
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.73 E-value=8.6 Score=42.65 Aligned_cols=90 Identities=11% Similarity=0.033 Sum_probs=50.3
Q ss_pred CCCeEEEEECCCCcEEEEeecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~-~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
.+|.+..+|..+++.+-....-. ....+... .+.+|..++.+|. +.++|..++ +.+++.+-+
T Consensus 302 ~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~-l~~ld~~tG--------------~~~~~~~~~ 364 (394)
T PRK11138 302 QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGY-LHWINREDG--------------RFVAQQKVD 364 (394)
T ss_pred CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCE-EEEEECCCC--------------CEEEEEEcC
Confidence 34666667776666554332111 01111111 1445667888997 889998887 455554322
Q ss_pred CCcccEE-EEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 378 LTNAVIQ-DISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 378 ~~~a~I~-~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
.. .+. ...+ .+..|..++.||+++.|++
T Consensus 365 ~~--~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 365 SS--GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CC--cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 11 122 1122 3457888899999988865
No 310
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.62 E-value=0.089 Score=60.94 Aligned_cols=102 Identities=10% Similarity=0.157 Sum_probs=74.7
Q ss_pred cCCCCeEEEEECCCCcEE-EEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe
Q 005349 297 ADNVGMVIVRDIVSKNVI-AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i-~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~ 375 (701)
+...|.+.+|.-..+... ....+-.+.+..++.|++..+.|.|+..|. |-||.+....+ ..+.-+.
T Consensus 51 GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~~~p------------~~~~~~t 117 (726)
T KOG3621|consen 51 GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNKELP------------RDLDYVT 117 (726)
T ss_pred ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhccCC------------Ccceeec
Confidence 456799999987766432 222234456777899999999999988886 89998876411 1112222
Q ss_pred ccCC--cccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 376 RGLT--NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 376 rG~~--~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
+++. ...|++++||+|++.|.+|.+.|+|+.-.++.
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 3333 45699999999999999999999999988876
No 311
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=94.56 E-value=0.1 Score=54.03 Aligned_cols=112 Identities=18% Similarity=0.138 Sum_probs=71.6
Q ss_pred cccCCCCeEEEEECCCCc-EEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCC--CC--CCccCCC--C
Q 005349 295 PDADNVGMVIVRDIVSKN-VIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGIL--GT--SSACDAG--T 366 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~-~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~--~~--~s~~~~~--~ 366 (701)
..+..+|.+.|||.+... ++..+++|+.+|.-+-|+| ++..|.|+|.||. +--||..+..- ++ +....|. +
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~~~l~i~~~~s~~s~WLsgD 274 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDASTTFLSISNQASVISSWLSGD 274 (319)
T ss_pred EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCCceEEecCccccccccccCC
Confidence 456789999999999875 4567789999999999999 7899999999998 66788764210 11 1111111 1
Q ss_pred ceeEEEEEeccCCcccEEEE-EEcCCCCEEEEEeCCCcEEEEe
Q 005349 367 SYVHLYRLQRGLTNAVIQDI-SFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 367 ~~~~l~~l~rG~~~a~I~~i-aFSpDg~~lAsgS~dgTI~Iwd 408 (701)
.++-+.++. +.-+....+| .|.--|..|++|++-+-|.+.+
T Consensus 275 ~v~s~i~i~-~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 275 PVKSRIEIT-SLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cccceEeee-ccccccceeeeeeeccCceEEeccccceEEEec
Confidence 111112221 1111122222 3555677899999888888765
No 312
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=94.43 E-value=0.066 Score=59.54 Aligned_cols=98 Identities=17% Similarity=0.278 Sum_probs=73.5
Q ss_pred EEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC--
Q 005349 313 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-- 390 (701)
Q Consensus 313 ~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp-- 390 (701)
....|..|.+-|+.|-|+..|+.|+|+|+|-+ |.+||.... .....+.-||... |..-.|=|
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~-vv~WdW~~~--------------~~~l~f~SGH~~N-vfQaKFiP~s 197 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQ-VVVWDWVSG--------------SPKLSFESGHCNN-VFQAKFIPFS 197 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccce-EEeehhhcc--------------Ccccccccccccc-hhhhhccCCC
Confidence 34567899999999999999999999999976 899998766 3344666666543 44455765
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCce---eecCCCCCcc
Q 005349 391 DSNWIMISSSRGTSHLFAINPLGGSV---NFQPTDANFT 426 (701)
Q Consensus 391 Dg~~lAsgS~dgTI~Iwdl~~~g~~~---~~~~H~~~~~ 426 (701)
+.+-+++++.||-+++=.+...+... .+..|.+++.
T Consensus 198 ~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vh 236 (559)
T KOG1334|consen 198 GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVH 236 (559)
T ss_pred CCcCceeccccCceeeeeeccccceecceecccccCccc
Confidence 56789999999999998887665443 3456665554
No 313
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=94.42 E-value=0.086 Score=56.53 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=81.3
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
.+-.|-+-|++++.. ..|. ..+.|.++.|.-.+.++..|...|. |-+.|++....| ..++.+.|..+
T Consensus 232 ~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnqG---------~~~~a~rlyh~- 298 (425)
T KOG2695|consen 232 LSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQG---------NGWCAQRLYHD- 298 (425)
T ss_pred ccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecccC---------CCcceEEEEcC-
Confidence 445677788887743 4454 5678999999999999999999997 889999876322 23566666533
Q ss_pred CcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCC---ceeecCCCCCc
Q 005349 379 TNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGG---SVNFQPTDANF 425 (701)
Q Consensus 379 ~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~~g~---~~~~~~H~~~~ 425 (701)
..|+++..=. ++++|++++.+|+|++||+...++ .....+|.+..
T Consensus 299 --Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~ 347 (425)
T KOG2695|consen 299 --SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS 347 (425)
T ss_pred --cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccc
Confidence 2355555433 678999999999999999987766 44556775543
No 314
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.36 E-value=8.9 Score=41.23 Aligned_cols=50 Identities=6% Similarity=0.246 Sum_probs=40.8
Q ss_pred cEEEEEECCCC-------cEEEEEecCCCEEEEEecCCEEEEEeCCEEEEEECCCCc
Q 005349 117 TVVHFYSLRSQ-------SYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLE 166 (701)
Q Consensus 117 ~tVriWdl~tg-------~~v~tL~f~s~V~sV~~s~~~LaVa~~~~I~iwDl~t~~ 166 (701)
+.|.+|++... +.+++..++++|++|..-+..|+++...+|++|++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcc
Confidence 88999999985 355666789999999986666888889999999998776
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=0.16 Score=59.60 Aligned_cols=94 Identities=20% Similarity=0.213 Sum_probs=69.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
+=+...|.|++++....- .+...|... +-+|.++||||.||+ +.|..+.+. ...+.+.+
T Consensus 53 ~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~------------~~~~~~df 111 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTD------------DEITQYDF 111 (846)
T ss_pred eeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCc-EEEeeccCC------------ccceeEec
Confidence 345677899999876542 455566544 778999999999998 788887765 22455677
Q ss_pred eccCCcccEEEEEEcCC-----CCEEEEEeCCCcEEEEecCCCCCc
Q 005349 375 QRGLTNAVIQDISFSDD-----SNWIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpD-----g~~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
.| .|.+|+++|| ++.+++|+..| +.++.-+-.|..
T Consensus 112 ~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk 151 (846)
T KOG2066|consen 112 KR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK 151 (846)
T ss_pred CC-----cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence 55 3889999998 78899999998 777765444433
No 316
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.23 E-value=0.74 Score=47.41 Aligned_cols=97 Identities=25% Similarity=0.294 Sum_probs=59.2
Q ss_pred eEEEEECCCCcEEEEeec-----CCCCeEEEEEcCCCCEEEEEeCCCcE-----EEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 302 MVIVRDIVSKNVIAQFRA-----HKSPISALCFDPSGILLVTASVQGHN-----INIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~-----H~~~Is~laFSPdG~lLaTaS~dGt~-----I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
.+.++|+.+++....+.. .....+.++++|+|.+.+|-+..... =+||.+... ..+
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--------------~~~ 126 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--------------GKV 126 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--------------SEE
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--------------CeE
Confidence 345669888754333332 33568889999999999887754210 134544432 111
Q ss_pred EEEeccCCcccEEEEEEcCCCCEEE-EEeCCCcEEEEecCCCCC
Q 005349 372 YRLQRGLTNAVIQDISFSDDSNWIM-ISSSRGTSHLFAINPLGG 414 (701)
Q Consensus 372 ~~l~rG~~~a~I~~iaFSpDg~~lA-sgS~dgTI~Iwdl~~~g~ 414 (701)
..+..+. ..-+.|+|+||++.|. +-+..+.|..|+++..+.
T Consensus 127 ~~~~~~~--~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~ 168 (246)
T PF08450_consen 127 TVVADGL--GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG 168 (246)
T ss_dssp EEEEEEE--SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred EEEecCc--ccccceEECCcchheeecccccceeEEEecccccc
Confidence 2222222 2368999999999775 667788899999976554
No 317
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.13 E-value=0.14 Score=39.56 Aligned_cols=31 Identities=13% Similarity=0.329 Sum_probs=28.5
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
++.|..++|||....||.++.||.|.||+++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999994
No 318
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=93.81 E-value=0.14 Score=57.47 Aligned_cols=88 Identities=15% Similarity=0.277 Sum_probs=65.5
Q ss_pred EEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEE
Q 005349 305 VRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQ 384 (701)
Q Consensus 305 IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~ 384 (701)
.|.-.+...-..+.+-.-++..++|||.|++|++....| |.+|+-... ..+.+++ ...|.
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~--V~~~~g~~~--------------~~l~~~~----~~~V~ 75 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG--VECWGGPSK--------------AKLVRFR----HPDVK 75 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhccc--eEEccccch--------------hheeeee----cCCce
Confidence 355555555555666677999999999999999987765 899986554 2333432 34599
Q ss_pred EEEEcCCCCEEEEEeCCCc---------------EEEEecCCC
Q 005349 385 DISFSDDSNWIMISSSRGT---------------SHLFAINPL 412 (701)
Q Consensus 385 ~iaFSpDg~~lAsgS~dgT---------------I~Iwdl~~~ 412 (701)
.+.|||.++||.+=+..+. +.|||+...
T Consensus 76 ~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg 118 (561)
T COG5354 76 YLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG 118 (561)
T ss_pred ecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc
Confidence 9999999999998776554 889998754
No 319
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.80 E-value=6.7 Score=42.28 Aligned_cols=70 Identities=20% Similarity=0.347 Sum_probs=49.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC
Q 005349 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 321 ~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
.+.|-+|+|+++|.++|..|-.|..+.+||..++ +.+-.. .-.++..++-.+++ +++++ .
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg--------------~~~~~~----~l~D~cGva~~~~~-f~~ss-G 275 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG--------------RLLGSV----PLPDACGVAPTDDG-FLVSS-G 275 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC--------------CEeecc----ccCceeeeeecCCc-eEEeC-C
Confidence 4689999999999999888888888999999987 333222 22347778877777 55443 3
Q ss_pred CCcEEEEecCCC
Q 005349 401 RGTSHLFAINPL 412 (701)
Q Consensus 401 dgTI~Iwdl~~~ 412 (701)
.|. ++.+...
T Consensus 276 ~G~--~~~~~~~ 285 (305)
T PF07433_consen 276 QGQ--LIRLSPD 285 (305)
T ss_pred Ccc--EEEccCc
Confidence 443 5555543
No 320
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=93.76 E-value=0.068 Score=55.38 Aligned_cols=95 Identities=13% Similarity=0.223 Sum_probs=63.3
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd-G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
+..++|+++-.+.+..-+--...|+++|-+|. ..++++|+.|| .+-|||.+... ..-.+... +
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg-~~~l~d~rn~~--------------~p~S~l~a-h 222 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDG-IVGLWDARNVA--------------MPVSLLKA-H 222 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCC-eEEEEEccccc--------------chHHHHHH-h
Confidence 45667777644322111111234999999995 55666677776 59999988651 11111122 2
Q ss_pred cccEEEEEEcC-CCCEEEEEeCCCcEEEEecCC
Q 005349 380 NAVIQDISFSD-DSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 380 ~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~ 411 (701)
.+.|+.+-|.| ++..|.++|.||.+--||-+.
T Consensus 223 k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 223 KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 35699999999 889999999999999999874
No 321
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.2 Score=57.61 Aligned_cols=60 Identities=17% Similarity=0.359 Sum_probs=51.0
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS-ALCFDPSGILLVTASVQGHNINIFKIIPG 354 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is-~laFSPdG~lLaTaS~dGt~I~Iwdl~~~ 354 (701)
.++....+|.|.+.-+. -+.+.+|.-|..+++ ++||.|||++||.|=.||+ |+|-|+..+
T Consensus 34 LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~ 94 (665)
T KOG4640|consen 34 LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKG 94 (665)
T ss_pred hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCC
Confidence 34556678888888887 667788887777777 9999999999999999998 999999876
No 322
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.69 E-value=0.12 Score=59.92 Aligned_cols=99 Identities=15% Similarity=0.242 Sum_probs=72.6
Q ss_pred ccccCCCCeEEEEECCCCc---------------EEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCC
Q 005349 294 FPDADNVGMVIVRDIVSKN---------------VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT 358 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~---------------~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~ 358 (701)
++.++.||.++|..+.+.. .-+++.+|...|.-+.|+-+-+.|-|.+.+|- |.||-+..+. +
T Consensus 29 IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl-IiVWmlykgs-W- 105 (1189)
T KOG2041|consen 29 IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL-IIVWMLYKGS-W- 105 (1189)
T ss_pred EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce-EEEEeeeccc-H-
Confidence 4456778988888766421 22467799999999999999999999999985 8999887651 0
Q ss_pred CCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005349 359 SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (701)
Q Consensus 359 ~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iw 407 (701)
++.+.. .| ....|.+++|..||+.++..-.||.|.|=
T Consensus 106 ---------~EEMiN-nR--nKSvV~SmsWn~dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 106 ---------CEEMIN-NR--NKSVVVSMSWNLDGTKICIVYEDGAVIVG 142 (1189)
T ss_pred ---------HHHHhh-Cc--CccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence 011111 12 22359999999999999999888887653
No 323
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=93.24 E-value=0.18 Score=53.43 Aligned_cols=104 Identities=17% Similarity=0.276 Sum_probs=69.6
Q ss_pred ccccCCCCeEEEEECCCCcE----------------EEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCC
Q 005349 294 FPDADNVGMVIVRDIVSKNV----------------IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG 357 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~----------------i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~ 357 (701)
+--....|.|++-|++.... +.-|..-.+.|+.+.|+++|+++++-+-- .++|||+....
T Consensus 237 fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl--tvkiwDvnm~k-- 312 (460)
T COG5170 237 FMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL--TVKIWDVNMAK-- 312 (460)
T ss_pred EEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc--eEEEEeccccc--
Confidence 33455679999999984211 11122334789999999999999987664 49999987641
Q ss_pred CCCccCCCCceeEEEEEe-----c-----cCCcccE---EEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 358 TSSACDAGTSYVHLYRLQ-----R-----GLTNAVI---QDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 358 ~~s~~~~~~~~~~l~~l~-----r-----G~~~a~I---~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
.++.+.. + -..+..| ..|.||-|.+.+.+||-....-|+...+.
T Consensus 313 -----------~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 313 -----------NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred -----------CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccC
Confidence 2222221 0 0001113 35899999999999999999999885543
No 324
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=93.05 E-value=1.3 Score=49.60 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=83.5
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCc
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~ 380 (701)
|++.|.+...+-.++ -+|...|....+.-++.-++.|..||..+-|+|..++ ...++..+.
T Consensus 341 GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---------------e~kr~e~~l-- 401 (668)
T COG4946 341 GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---------------EVKRIEKDL-- 401 (668)
T ss_pred CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---------------eEEEeeCCc--
Confidence 455554444332221 2677789999999999999999999988999999876 333444443
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCcccccCCCcccccccCCCCCCC
Q 005349 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANFTTKHGAMAKSGVRWPPNLGLQ 446 (701)
Q Consensus 381 a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~~~~~~~~~~~~~~~~~~~s~~~ 446 (701)
..|..+..++||++++.+.++..+-+.|+++......=+...+.+. +..|.+..||--..-++
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lIt---df~~~~nsr~iAYafP~ 464 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLIT---DFDWHPNSRWIAYAFPE 464 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeE---EEEEcCCceeEEEecCc
Confidence 3599999999999999999999999999976433222233333333 34455554555444443
No 325
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.81 E-value=0.25 Score=55.89 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=56.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCC-
Q 005349 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR- 401 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d- 401 (701)
.=+.+.|||-|+||+|-=..| |.+|--... ..+++| .++ .|+-+.|||.-+||++=|.-
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G--I~lWGG~~f--------------~r~~RF---~Hp-~Vq~idfSP~EkYLVT~s~~p 271 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG--IALWGGESF--------------DRIQRF---YHP-GVQFIDFSPNEKYLVTYSPEP 271 (698)
T ss_pred eeeeEEecCCceEEEEEeccc--eeeecCccH--------------HHHHhc---cCC-CceeeecCCccceEEEecCCc
Confidence 346799999999999988887 789964432 233333 233 39999999999999987642
Q ss_pred ----------CcEEEEecCCCCCceeecC
Q 005349 402 ----------GTSHLFAINPLGGSVNFQP 420 (701)
Q Consensus 402 ----------gTI~Iwdl~~~g~~~~~~~ 420 (701)
..+.|||+.++....+|..
T Consensus 272 ~~~~~~d~e~~~l~IWDI~tG~lkrsF~~ 300 (698)
T KOG2314|consen 272 IIVEEDDNEGQQLIIWDIATGLLKRSFPV 300 (698)
T ss_pred cccCcccCCCceEEEEEccccchhcceec
Confidence 4689999988655555543
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=92.64 E-value=1.2 Score=52.16 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=67.0
Q ss_pred cCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEe---CCCcE-----------EEEEEcCCCC----CCC
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS---VQGHN-----------INIFKIIPGI----LGT 358 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS---~dGt~-----------I~Iwdl~~~~----~~~ 358 (701)
....+++.+.|..+.+...++.--. ....++|+|||+++.+.+ ..|.. +.+|++.... .|.
T Consensus 211 ~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK 289 (635)
T PRK02888 211 KKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGK 289 (635)
T ss_pred cceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCC
Confidence 4556889999999988888877543 335689999999998775 33222 2233322100 000
Q ss_pred -----C--C--ccCCC---CceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCC
Q 005349 359 -----S--S--ACDAG---TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLG 413 (701)
Q Consensus 359 -----~--s--~~~~~---~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~-dgTI~Iwdl~~~g 413 (701)
. . .+... .....++.+.-|. ....|++||||+++.+++. +.+|.|.|+.+..
T Consensus 290 ~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGK---sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 290 FKTIGGSKVPVVDGRKAANAGSALTRYVPVPK---NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred EEEECCCEEEEEECCccccCCcceEEEEECCC---CccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 0 0 00000 0001223332222 2568999999999887665 8999999998754
No 327
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.41 E-value=18 Score=41.53 Aligned_cols=57 Identities=11% Similarity=0.069 Sum_probs=39.3
Q ss_pred cEEEEEECCCCcEEEEEecCCC-------E--EEEEe-c-CCEEEEEeCCEEEEEECCCCceeEEEec
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSP-------I--YSVRC-S-SRVVAICQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~-------V--~sV~~-s-~~~LaVa~~~~I~iwDl~t~~~~~tl~t 173 (701)
+.|.-.|++||+.+-+.+.... + ..+.. . .++++...++.|+.+|+.|++.+.....
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 5677779999998877765322 1 12223 3 4445556789999999999998877654
No 328
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.35 E-value=0.31 Score=37.65 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKI 351 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl 351 (701)
.+|.+++|+|...+||.++.+|. |.|+++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl 40 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGE-VLVYRL 40 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCe-EEEEEC
Confidence 57999999999999999999998 899988
No 329
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.17 E-value=20 Score=44.69 Aligned_cols=97 Identities=13% Similarity=0.185 Sum_probs=58.7
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~---dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
..|+|||-. +..-..=..-..-=.+++|=|+|.++|+--. |++ |.+|.-+-- .+--+.+++-
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffErNGL-------------~hg~f~l~~p 286 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFERNGL-------------RHGEFVLPFP 286 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEecCCc-------------cccccccCCc
Confidence 689999977 3221111111223346999999999998643 333 777764321 0111333332
Q ss_pred CCcccEEEEEEcCCCCEEEE---EeCCCcEEEEecCCC
Q 005349 378 LTNAVIQDISFSDDSNWIMI---SSSRGTSHLFAINPL 412 (701)
Q Consensus 378 ~~~a~I~~iaFSpDg~~lAs---gS~dgTI~Iwdl~~~ 412 (701)
.....|..++|+.++..||+ ......|.+|-+..+
T Consensus 287 ~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 287 LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 22223899999999999998 333445999987643
No 330
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=91.80 E-value=1.7 Score=39.76 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=45.6
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEe
Q 005349 324 ISALCFDP---SG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 399 (701)
Q Consensus 324 Is~laFSP---dG-~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS 399 (701)
|++|++.. || ..|+.||.|.. ||||+-. ..++++.. ...|.+++-... ..++.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~~~----------------e~~~Ei~e---~~~v~~L~~~~~-~~F~Y~l 60 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFE-IRVFKGD----------------EIVAEITE---TDKVTSLCSLGG-GRFAYAL 60 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcE-EEEEeCC----------------cEEEEEec---ccceEEEEEcCC-CEEEEEe
Confidence 55666554 43 47888999975 9999854 34555532 345888877766 5788999
Q ss_pred CCCcEEEEec
Q 005349 400 SRGTSHLFAI 409 (701)
Q Consensus 400 ~dgTI~Iwdl 409 (701)
.+|||-||+-
T Consensus 61 ~NGTVGvY~~ 70 (111)
T PF14783_consen 61 ANGTVGVYDR 70 (111)
T ss_pred cCCEEEEEeC
Confidence 9999887754
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.50 E-value=0.27 Score=58.01 Aligned_cols=98 Identities=18% Similarity=0.256 Sum_probs=71.0
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
..|.|.||- ++|++-....- .-.+++|||+|.--.||.+=..|- +.+|...+. ..+++.- .
T Consensus 39 r~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~-~~v~~~~~~---------------e~htv~~-t 99 (1416)
T KOG3617|consen 39 RGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGV-SDVQKTNTT---------------ETHTVVE-T 99 (1416)
T ss_pred CCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccce-eEEEecCCc---------------eeeeecc-C
Confidence 446777763 44544322211 012456999999999999988886 899987653 3344432 3
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCc
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
+++.|+.+.|||||..|.++..-|.+|+|.+.-.|..
T Consensus 100 h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~ 136 (1416)
T KOG3617|consen 100 HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEI 136 (1416)
T ss_pred CCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccc
Confidence 5677999999999999999999999999999866544
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=91.49 E-value=0.38 Score=55.04 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=47.1
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~ 354 (701)
.++-+..||.|++||...+. .++..+.-..+.++|+|+|.+++.|+..|. +.+||+.-.
T Consensus 273 kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALs 331 (545)
T PF11768_consen 273 KLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALS 331 (545)
T ss_pred eEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeecC
Confidence 34557899999999998763 333334456788999999999999999997 899998754
No 333
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.39 E-value=0.92 Score=52.89 Aligned_cols=97 Identities=16% Similarity=0.358 Sum_probs=67.3
Q ss_pred ccccCCCCeEEEEECCCCcEEEEee--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 294 FPDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~i~~~~--~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
+.+.+.+|.|.||=+-.+.=...+- ...+-|.+|+|+-||+.++..=.||. |.|=.+. | ..+
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa-vIVGsvd-G--------------NRI 149 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA-VIVGSVD-G--------------NRI 149 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC-EEEEeec-c--------------cee
Confidence 3456788999999987765322222 34568999999999999988888876 4343332 1 122
Q ss_pred E--EEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 372 Y--RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 372 ~--~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
+ +| .|.. ...+.||+|.+.+..+-..|.+|++|..
T Consensus 150 wgKeL-kg~~---l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 150 WGKEL-KGQL---LAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred cchhc-chhe---ccceeecccHHHHHhhhcCCcEEEeccc
Confidence 1 12 2322 3467799999999999999999999964
No 334
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.37 E-value=0.59 Score=51.85 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=76.9
Q ss_pred CCCCeEEEEECCCCc-EEEEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC-C-CCCCCccCCCCceeEEEE
Q 005349 298 DNVGMVIVRDIVSKN-VIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG-I-LGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~-~i~~~~-~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~-~-~~~~s~~~~~~~~~~l~~ 373 (701)
..+|.|.|+|-.... ++..++ -|.+||.++.++|.|...++.+..|- |.-|..... . +.+--.... ..-.-||.
T Consensus 119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-VEyWs~e~~~qfPr~~l~~~~-K~eTdLy~ 196 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-VEYWSAEGPFQFPRTNLNFEL-KHETDLYG 196 (558)
T ss_pred ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce-eEeecCCCcccCccccccccc-cccchhhc
Confidence 356889999976543 344444 79999999999999999999988885 999987631 0 000000000 00011232
Q ss_pred EeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCc
Q 005349 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 374 l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
+.+. .....++.|||+|..+++-+.|.+|++|+..+..-.
T Consensus 197 f~K~--Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 197 FPKA--KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cccc--ccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 2211 123789999999999999999999999999765433
No 335
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.02 E-value=15 Score=42.69 Aligned_cols=79 Identities=15% Similarity=0.341 Sum_probs=50.3
Q ss_pred CCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
-|.+.-+|+.+++.+-+++......... ..-.|.++..++.+|. ++.+|..++ +.+++.+-+.
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~-l~a~D~~TG--------------e~lw~~~~g~- 502 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGY-FKAFDAKTG--------------EELWKFKTGS- 502 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCe-EEEEECCCC--------------CEeEEEeCCC-
Confidence 4789999999999888776433222221 1225557777888987 999999998 7777775442
Q ss_pred cccEEEEEEcCCCCEE
Q 005349 380 NAVIQDISFSDDSNWI 395 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~l 395 (701)
...-.=+.|.-||+..
T Consensus 503 ~~~a~P~ty~~~G~qY 518 (527)
T TIGR03075 503 GIVGPPVTYEQDGKQY 518 (527)
T ss_pred CceecCEEEEeCCEEE
Confidence 1111224455566543
No 336
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.75 E-value=0.6 Score=50.79 Aligned_cols=58 Identities=26% Similarity=0.340 Sum_probs=45.3
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEEEEec----CCEEEEEe-CCEEEEEECCCCceeEEEecC
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS----SRVVAICQ-AAQVHCFDAATLEIEYAILTN 174 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~sV~~s----~~~LaVa~-~~~I~iwDl~t~~~~~tl~t~ 174 (701)
+.|-+||++|++.+..+....++.+|..+ +.++++.. ++.+.+||+.|++.++++...
T Consensus 269 teVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred eEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 67999999999999999998889899996 35556654 679999999999999988753
No 337
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.66 E-value=9.5 Score=45.50 Aligned_cols=75 Identities=13% Similarity=0.287 Sum_probs=50.5
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCc----ccEEEEEEcCC
Q 005349 316 QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN----AVIQDISFSDD 391 (701)
Q Consensus 316 ~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~----a~I~~iaFSpD 391 (701)
.+..-.++|.+++|. |.++|=++++| |+|||+.+. ..+-.+.+-... .--..+.|.++
T Consensus 155 ~l~~~eG~I~~i~W~--g~lIAWand~G--v~vyd~~~~--------------~~l~~i~~p~~~~R~e~fpphl~W~~~ 216 (846)
T KOG2066|consen 155 VLSEGEGPIHSIKWR--GNLIAWANDDG--VKVYDTPTR--------------QRLTNIPPPSQSVRPELFPPHLHWQDE 216 (846)
T ss_pred eeecCccceEEEEec--CcEEEEecCCC--cEEEecccc--------------ceeeccCCCCCCCCcccCCCceEecCC
Confidence 455566899999996 89999999998 699999876 222222211100 00245788877
Q ss_pred CCEEEEEeCCCcEEEEecC
Q 005349 392 SNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 392 g~~lAsgS~dgTI~Iwdl~ 410 (701)
. .|+.|=.| +|+|..+.
T Consensus 217 ~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 217 D-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred C-eEEEecCC-eEEEEEEe
Confidence 5 55566555 89999997
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.63 E-value=16 Score=41.65 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=38.5
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 333 G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
|.+|...+.+ .|.+||..++ ..+.++. -..|..+.||+||+++|..+.+ ++.|++.+.
T Consensus 117 G~LL~~~~~~--~i~~yDw~~~--------------~~i~~i~----v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 117 GNLLGVKSSD--FICFYDWETG--------------KLIRRID----VSAVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp SSSEEEEETT--EEEEE-TTT----------------EEEEES----S-E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred CcEEEEECCC--CEEEEEhhHc--------------ceeeEEe----cCCCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 9999888776 3899999886 4554442 2238899999999999999865 788877653
No 339
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=89.98 E-value=0.71 Score=50.63 Aligned_cols=102 Identities=12% Similarity=0.158 Sum_probs=58.2
Q ss_pred CCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
.+.+.|||+.+++....... ...+....|||||+.||-... +.|.++++..+........+ ... . + .|..
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~--~nly~~~~~~~~~~~lT~dg-~~~--i-~---nG~~ 91 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD--NNLYLRDLATGQETQLTTDG-EPG--I-Y---NGVP 91 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET--TEEEEESSTTSEEEESES---TTT--E-E---ESB-
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec--CceEEEECCCCCeEEecccc-cee--E-E---cCcc
Confidence 36799999999865433333 678899999999999999874 35888887654100000000 000 0 0 0110
Q ss_pred --------cccEEEEEEcCCCCEEEEEeCC-CcEEEEecCC
Q 005349 380 --------NAVIQDISFSDDSNWIMISSSR-GTSHLFAINP 411 (701)
Q Consensus 380 --------~a~I~~iaFSpDg~~lAsgS~d-gTI~Iwdl~~ 411 (701)
-..-..+-|||||++||....| ..|+.+.+-.
T Consensus 92 dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~ 132 (353)
T PF00930_consen 92 DWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD 132 (353)
T ss_dssp -HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE
T ss_pred ceeccccccccccceEECCCCCEEEEEEECCcCCceEEeec
Confidence 0011357799999999976654 4466655543
No 340
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=89.69 E-value=4.2 Score=49.24 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=45.8
Q ss_pred ccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 005349 292 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (701)
Q Consensus 292 ~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~ 352 (701)
|+++.++.+|.||+||-...+....|++-..||..|..+.||++|+.... +.+-|+++.
T Consensus 589 G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t~ 647 (794)
T PF08553_consen 589 GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDTL 647 (794)
T ss_pred ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEEe
Confidence 45566788999999996666666678887899999999999998655443 347788864
No 341
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.67 E-value=1 Score=54.85 Aligned_cols=97 Identities=14% Similarity=0.361 Sum_probs=57.1
Q ss_pred cCCCCeEEEEECCCC-cEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe
Q 005349 297 ADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~-~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~ 375 (701)
+..-|.|...|.... .+..+=..-.++|++++|+.||++|+.|=.+|. |.+||+..+ ...+..+..
T Consensus 105 ~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~------------k~l~~i~e~ 171 (1206)
T KOG2079|consen 105 GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRA------------KILKVITEH 171 (1206)
T ss_pred EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCC------------cceeeeeec
Confidence 334466666665543 111111123479999999999999999999997 999999875 112222221
Q ss_pred ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 376 rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
|+...-|.-+-+..++..+.++...|. +|.+
T Consensus 172 -~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 172 -GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred -CCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 211111333444445556666666665 5655
No 342
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=88.57 E-value=10 Score=39.39 Aligned_cols=44 Identities=18% Similarity=0.102 Sum_probs=37.4
Q ss_pred EEEecCCCEEEEEecCCEEEEEeCCEEEEEECCCCceeEEEecC
Q 005349 131 HMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTN 174 (701)
Q Consensus 131 ~tL~f~s~V~sV~~s~~~LaVa~~~~I~iwDl~t~~~~~tl~t~ 174 (701)
.+|++.+.+.++.+...+|.+..++.|.||++.+++.++++...
T Consensus 223 ~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 223 STIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred cEEEcCCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEECC
Confidence 47888888889999877887777888999999999999988753
No 343
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.04 E-value=1.3 Score=33.54 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCcEEEEEEcCCC
Q 005349 322 SPISALCFDPSG---ILLVTASVQGHNINIFKIIPG 354 (701)
Q Consensus 322 ~~Is~laFSPdG---~lLaTaS~dGt~I~Iwdl~~~ 354 (701)
+.|.+++|||+. .+||-+-..|. |.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEcccC
Confidence 468899999854 49998888887 999999853
No 344
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=87.68 E-value=0.99 Score=48.01 Aligned_cols=77 Identities=23% Similarity=0.379 Sum_probs=52.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe---ccCC-----------cccEEEEE
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---RGLT-----------NAVIQDIS 387 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~---rG~~-----------~a~I~~ia 387 (701)
.-|+++-|+..|.|||||+..|+ +.+|.-... . .|-|++. .++. ..+|..|.
T Consensus 27 d~ItaVefd~tg~YlatGDkgGR-Vvlfer~~s-~------------~ceykf~teFQshe~EFDYLkSleieEKin~I~ 92 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGR-VVLFEREKS-Y------------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIE 92 (460)
T ss_pred ceeeEEEeccccceEeecCCCce-EEEeecccc-c------------ccchhhhhhhcccccchhhhhhccHHHHhhhee
Confidence 46899999999999999999998 778864332 0 1222111 0110 12378888
Q ss_pred EcCCCC--EEEEEeCCCcEEEEecCCC
Q 005349 388 FSDDSN--WIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 388 FSpDg~--~lAsgS~dgTI~Iwdl~~~ 412 (701)
|-.++. .+..++.|.||++|.+-..
T Consensus 93 w~~~t~r~hFLlstNdktiKlWKiyek 119 (460)
T COG5170 93 WFDDTGRNHFLLSTNDKTIKLWKIYEK 119 (460)
T ss_pred eecCCCcceEEEecCCceeeeeeeecc
Confidence 877654 4777888999999998643
No 345
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.62 E-value=12 Score=45.10 Aligned_cols=92 Identities=13% Similarity=0.225 Sum_probs=59.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCcc-CCCCceeEE-EE----EeccCCcccEEEEEEcCC---C
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSAC-DAGTSYVHL-YR----LQRGLTNAVIQDISFSDD---S 392 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~-~~~~~~~~l-~~----l~rG~~~a~I~~iaFSpD---g 392 (701)
-.|..|.+||+|++||-++..| |-|-.+... .|..+.. +......|. +. +.+......|..+.|.|. +
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r-~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG--VVVLELPRR-WGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc--EEEEEeccc-cCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 4788899999999999999886 566666431 1111111 111122221 11 112223345999999986 5
Q ss_pred CEEEEEeCCCcEEEEecCCCCCce
Q 005349 393 NWIMISSSRGTSHLFAINPLGGSV 416 (701)
Q Consensus 393 ~~lAsgS~dgTI~Iwdl~~~g~~~ 416 (701)
..|++=++|+++++||+.....+.
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCCCe
Confidence 899999999999999998655544
No 346
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.53 E-value=0.31 Score=57.87 Aligned_cols=106 Identities=10% Similarity=0.145 Sum_probs=80.8
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGH-NINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt-~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
+++.+...|.|+++++.+|.......+|.++|+.|.=|.||.++.|.|.-.. ..-+|++... . ...
T Consensus 1115 hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~-~------------~~~ 1181 (1516)
T KOG1832|consen 1115 HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST-G------------GPR 1181 (1516)
T ss_pred eEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc-c------------Ccc
Confidence 5566778899999999999999999999999999999999998888765433 4568988652 1 112
Q ss_pred EEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCcee
Q 005349 372 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 417 (701)
Q Consensus 372 ~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~ 417 (701)
+.++ + =.++.||...+.-+.|+.....+|||+.+.....+
T Consensus 1182 Hsf~-e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1182 HSFD-E-----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred cccc-c-----cceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 2331 2 34688998888888888888999999987544333
No 347
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.23 E-value=5.9 Score=44.32 Aligned_cols=101 Identities=17% Similarity=0.225 Sum_probs=61.0
Q ss_pred cEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCC-----CCCCccCCCC-ceeEE--EEEecc------
Q 005349 312 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL-----GTSSACDAGT-SYVHL--YRLQRG------ 377 (701)
Q Consensus 312 ~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~-----~~~s~~~~~~-~~~~l--~~l~rG------ 377 (701)
+-+-.|.--.....++.|+|+|..+++-+.|- .||+|+.+++.- ...+.+..+. +-..+ .+|.|.
T Consensus 192 TdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr-kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmavere 270 (558)
T KOG0882|consen 192 TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR-KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERE 270 (558)
T ss_pred chhhcccccccCccceEEccccCcccccCccc-EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhh
Confidence 33444444456788999999999999999885 499999988720 1111000000 00000 011111
Q ss_pred ---CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 005349 378 ---LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (701)
Q Consensus 378 ---~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~ 414 (701)
+....-..++|...|++|.-++.=| |+|.++.+...
T Consensus 271 lek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 271 LEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred HhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence 1122345788999999999987654 78888877543
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=87.13 E-value=2.3 Score=48.15 Aligned_cols=96 Identities=25% Similarity=0.373 Sum_probs=60.4
Q ss_pred CeEEEEECCCCc--EEEEeecCCCCeEEEEEcCCCCEEEEEe-CCCc-EEEEEEcCCCCCCCCCccCCCCceeEEEEEec
Q 005349 301 GMVIVRDIVSKN--VIAQFRAHKSPISALCFDPSGILLVTAS-VQGH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (701)
Q Consensus 301 G~V~IwDl~s~~--~i~~~~~H~~~Is~laFSPdG~lLaTaS-~dGt-~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r 376 (701)
..+.++|+.+++ .+..+.+|.. .-+|||||+.||-++ .||. .|.+.|+... .+.+|.+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~---------------~~~~Lt~ 279 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLDGK---------------NLPRLTN 279 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCCCC---------------cceeccc
Confidence 468999998875 4445556653 368999999877654 4443 2444455443 1223333
Q ss_pred cCCcccEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCCce
Q 005349 377 GLTNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSV 416 (701)
Q Consensus 377 G~~~a~I~~iaFSpDg~~lAsgS~-dgTI~Iwdl~~~g~~~ 416 (701)
+... -..=.|||||++|+-.|+ .|.-.||-++..++.+
T Consensus 280 ~~gi--~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 280 GFGI--NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred CCcc--ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 3221 225679999999997766 4566777777766654
No 349
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=86.44 E-value=56 Score=35.89 Aligned_cols=105 Identities=12% Similarity=0.148 Sum_probs=58.8
Q ss_pred CCCCeEEEEECCCCcE--EEEeecCC----------CCeEEEEEcCCCCEEEEEeCC---------CcEEEEEEcCCCCC
Q 005349 298 DNVGMVIVRDIVSKNV--IAQFRAHK----------SPISALCFDPSGILLVTASVQ---------GHNINIFKIIPGIL 356 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~--i~~~~~H~----------~~Is~laFSPdG~lLaTaS~d---------Gt~I~Iwdl~~~~~ 356 (701)
...|.|+--|+..... ...+..-+ +.-.-+++++....|..--.. |+-|-+||+.++
T Consensus 202 Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~-- 279 (342)
T PF06433_consen 202 SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH-- 279 (342)
T ss_dssp BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT--
T ss_pred ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC--
Confidence 4567888777766542 12221110 233447787744333332211 234677777776
Q ss_pred CCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCC-EEEEE-eCCCcEEEEecCCCCCceeec
Q 005349 357 GTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMIS-SSRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 357 ~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~-~lAsg-S~dgTI~Iwdl~~~g~~~~~~ 419 (701)
+++.++.-. ..|.+|+.|.|.+ +|.+. ..++++.|||..+......+.
T Consensus 280 ------------krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 280 ------------KRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ------------EEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ------------eEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 666666422 3477999999887 45444 457999999998754444443
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=86.40 E-value=11 Score=41.84 Aligned_cols=95 Identities=15% Similarity=0.231 Sum_probs=68.3
Q ss_pred CCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCC--CcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe
Q 005349 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ--GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~d--Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~ 375 (701)
..+..|.+.|..+.+.+..+.--. .-..++|+|+|+.+..+... ...+.+.|..+. ..+.+..
T Consensus 93 ~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~--------------~~~~~~~ 157 (381)
T COG3391 93 GDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN--------------KVTATIP 157 (381)
T ss_pred CCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC--------------eEEEEEe
Confidence 346789999988887776665322 34569999999877777662 244788887765 4444565
Q ss_pred ccCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecC
Q 005349 376 RGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAIN 410 (701)
Q Consensus 376 rG~~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~ 410 (701)
.|..+ ..++++|+|+.+.... .++++.+++.+
T Consensus 158 vG~~P---~~~a~~p~g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 158 VGNTP---TGVAVDPDGNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred cCCCc---ceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence 66543 7899999999666555 78999999954
No 351
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.33 E-value=37 Score=39.11 Aligned_cols=59 Identities=8% Similarity=0.134 Sum_probs=44.4
Q ss_pred ccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 005349 292 GHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (701)
Q Consensus 292 ~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~ 352 (701)
|+++.++.+|.|++||-...+....|++-..+|..|..+.||+.|+.... +.+-+-++.
T Consensus 442 G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~--tyLlLi~t~ 500 (644)
T KOG2395|consen 442 GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK--TYLLLIDTL 500 (644)
T ss_pred ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc--cEEEEEEEe
Confidence 35566788999999998655666778888899999999999997654333 236666654
No 352
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=86.26 E-value=2.2 Score=32.41 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=25.3
Q ss_pred EEEEEEcCCCC---EEEEEeCCCcEEEEecCC
Q 005349 383 IQDISFSDDSN---WIMISSSRGTSHLFAINP 411 (701)
Q Consensus 383 I~~iaFSpDg~---~lAsgS~dgTI~Iwdl~~ 411 (701)
|.++.|||++. +||.+-..|.|||+|+..
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 78999998554 899999999999999983
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=86.12 E-value=65 Score=36.30 Aligned_cols=46 Identities=15% Similarity=0.298 Sum_probs=38.8
Q ss_pred cEEEEEECCCCcEEEEEecC-CCEEEEEec--CCEEEEEeCCEEEEEECC
Q 005349 117 TVVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAICQAAQVHCFDAA 163 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~-s~V~sV~~s--~~~LaVa~~~~I~iwDl~ 163 (701)
..|+||+. +|+.+.++.++ +.|..+.|+ .++|+|..++.+++||+.
T Consensus 61 ~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 61 NSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred cEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 47999997 67788999884 689999996 467778899999999986
No 354
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=86.10 E-value=70 Score=36.79 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=18.3
Q ss_pred CCCEEEEEeCCCcEEEEecCCC
Q 005349 391 DSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 391 Dg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
.+..|.+++.||.++.+|..+.
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTG 426 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCC
Confidence 5578888999999999998764
No 355
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.03 E-value=76 Score=37.03 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=37.4
Q ss_pred cEEEEEECCCCcEEEEEecCC-----CEE-E-EEecCCEEEEEe------CCEEEEEECCCCceeEEEecCC
Q 005349 117 TVVHFYSLRSQSYVHMLKFRS-----PIY-S-VRCSSRVVAICQ------AAQVHCFDAATLEIEYAILTNP 175 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s-----~V~-s-V~~s~~~LaVa~------~~~I~iwDl~t~~~~~tl~t~~ 175 (701)
+.|.-.|.+||+.+-...... .+. + +....++++... ++.|+.||++|++.+.+..+.+
T Consensus 130 g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p 201 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVP 201 (527)
T ss_pred CEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcC
Confidence 567777999999887765421 111 1 112333333332 5789999999999988876543
No 356
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=85.61 E-value=60 Score=35.47 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=38.8
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEEeCCEEEEEECCCCc
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLE 166 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa~~~~I~iwDl~t~~ 166 (701)
+.+.+||+.+++..........+....++ ++.+|...++.|+++++.+.+
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~ 74 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ 74 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSE
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCC
Confidence 67999999998765533335677888886 588998999999999998873
No 357
>PRK02888 nitrous-oxide reductase; Validated
Probab=85.54 E-value=6 Score=46.51 Aligned_cols=106 Identities=10% Similarity=0.005 Sum_probs=69.2
Q ss_pred CCeEEEEECCC-----CcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 300 VGMVIVRDIVS-----KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 300 dG~V~IwDl~s-----~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
++.|.|.|..+ .+.+..+.--. ....|++||||++|+.++.-...+-|.|+......-...-..... ...+.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~--vvaev 371 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA--VVAEP 371 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce--EEEee
Confidence 46799999988 45666665333 335689999999999888755569999997641000000000001 11222
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
.-|..+ .-.+|.++|+...+-..|..|-.|++.+
T Consensus 372 evGlGP---LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 ELGLGP---LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCCc---ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 224332 3578999999888888899999999976
No 358
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.50 E-value=4.5 Score=48.47 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=74.7
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeecCCCC-eEEEEEcCCCCEEEEEeCCCc----EEEEEEcCCCCCCCCCccCCCCce
Q 005349 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSP-ISALCFDPSGILLVTASVQGH----NINIFKIIPGILGTSSACDAGTSY 368 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~-Is~laFSPdG~lLaTaS~dGt----~I~Iwdl~~~~~~~~s~~~~~~~~ 368 (701)
++-+..+|.|.+.+- +.+.+..|++|... |..|-...+-.+|++-..|+. .++||++.... ++.+ +
T Consensus 38 vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~-~n~s-----P-- 108 (933)
T KOG2114|consen 38 VVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD-KNNS-----P-- 108 (933)
T ss_pred EEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC-CCCC-----c--
Confidence 344567788777763 34456889999988 666666555579999888887 79999997652 2211 1
Q ss_pred eEEEEE-----eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 369 VHLYRL-----QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 369 ~~l~~l-----~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
.+++.. .-+..+..+.+++.|.|=+.+|.|-.+|+|..+.=
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G 154 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG 154 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC
Confidence 343322 22323445889999999999999999999988753
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=84.45 E-value=6.1 Score=46.67 Aligned_cols=100 Identities=9% Similarity=0.089 Sum_probs=56.0
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE--EEecc-
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY--RLQRG- 377 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~--~l~rG- 377 (701)
..+.+++... .....+.+. ..++-.|||||+.|++.+......++.+-... ..++ .+.-|
T Consensus 379 s~Lwv~~~gg-~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~--------------gql~~~~vd~ge 441 (591)
T PRK13616 379 SSLWVGPLGG-VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT--------------GQLARTPVDASA 441 (591)
T ss_pred eEEEEEeCCC-cceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCC--------------ceEEEEeccCch
Confidence 3566666532 222223333 37788999999999998764344444432211 1222 21111
Q ss_pred ---CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC-CCCceee
Q 005349 378 ---LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP-LGGSVNF 418 (701)
Q Consensus 378 ---~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~-~g~~~~~ 418 (701)
.....|.++.|||||++||... +|.|+|=-+.. .++...+
T Consensus 442 ~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l 485 (591)
T PRK13616 442 VASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYAL 485 (591)
T ss_pred hhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceee
Confidence 0122499999999999999876 46666633332 3344444
No 360
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.18 E-value=1.4 Score=53.62 Aligned_cols=73 Identities=11% Similarity=0.214 Sum_probs=53.0
Q ss_pred CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC-CcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-TNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 332 dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~-~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
-+..+|.++..|+ +-.+|.... +.-+.+|. ....|.++||+.||+.++.|-.+|-|.+||++
T Consensus 98 ~~~~ivi~Ts~gh-vl~~d~~~n----------------L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~ 160 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGH-VLLSDMTGN----------------LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH 160 (1206)
T ss_pred eeeeEEEEcCchh-hhhhhhhcc----------------cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEcc
Confidence 5678899998888 778886542 11111221 23459999999999999999999999999998
Q ss_pred CCCCceeecCC
Q 005349 411 PLGGSVNFQPT 421 (701)
Q Consensus 411 ~~g~~~~~~~H 421 (701)
.......+..|
T Consensus 161 ~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 161 RAKILKVITEH 171 (1206)
T ss_pred CCcceeeeeec
Confidence 76555455443
No 361
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=84.18 E-value=2.2 Score=43.89 Aligned_cols=105 Identities=13% Similarity=0.124 Sum_probs=65.5
Q ss_pred ccccCCCCeEEEEECCCCcEEEE-eecCCCCeEE-EEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 294 FPDADNVGMVIVRDIVSKNVIAQ-FRAHKSPISA-LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~i~~-~~~H~~~Is~-laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
+..+..+|.|.+|...-...... +..-..+|.+ +.--.++.+..++..+|. ||-|.+.++ +++
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~--------------k~~ 137 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPN--------------KVL 137 (238)
T ss_pred EEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccC--------------cee
Confidence 34466789999987762111111 1111234444 333345678888999987 999999987 333
Q ss_pred EEEeccCCc-ccEEEEEEcCCCCEEEEE--eCCCcEEEEecCCCCCc
Q 005349 372 YRLQRGLTN-AVIQDISFSDDSNWIMIS--SSRGTSHLFAINPLGGS 415 (701)
Q Consensus 372 ~~l~rG~~~-a~I~~iaFSpDg~~lAsg--S~dgTI~Iwdl~~~g~~ 415 (701)
-. +|++. ..+.....+..++.|+++ |.|.+++.|++.+....
T Consensus 138 g~--~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~ 182 (238)
T KOG2444|consen 138 GY--VGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDE 182 (238)
T ss_pred ee--eccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhcc
Confidence 22 34444 456666667777888888 88888888888765443
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=83.30 E-value=5.1 Score=48.52 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=61.1
Q ss_pred CCCeEEEEECCCC--cEEE-Eee--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 299 NVGMVIVRDIVSK--NVIA-QFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 299 ~dG~V~IwDl~s~--~~i~-~~~--~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
.+..+..||.+-. +++. +.+ ......+|++-+.+|. ||.||.+|. ||+||- .+ ..-.+
T Consensus 550 s~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~-iavgs~~G~-IRLyd~-~g--------------~~AKT 612 (794)
T PF08553_consen 550 SDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGY-IAVGSNKGD-IRLYDR-LG--------------KRAKT 612 (794)
T ss_pred CCCceEEeccCCCCCceeeccccccccCCCceEEEecCCce-EEEEeCCCc-EEeecc-cc--------------hhhhh
Confidence 3445667776642 2331 121 3456889999998886 888999998 999983 22 11122
Q ss_pred EeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 374 l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
+-.|.. ..|..|..+.||+||++.+. .-+.|.+..
T Consensus 613 ~lp~lG-~pI~~iDvt~DGkwilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 613 ALPGLG-DPIIGIDVTADGKWILATCK-TYLLLIDTL 647 (794)
T ss_pred cCCCCC-CCeeEEEecCCCcEEEEeec-ceEEEEEEe
Confidence 223332 35999999999999987765 456677753
No 363
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=82.96 E-value=31 Score=31.76 Aligned_cols=89 Identities=15% Similarity=0.237 Sum_probs=61.2
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
.+..+..|..|+||+-. ..+.++..+. .|++|+-... ..++.|-..|| |-||+-. ..++
T Consensus 17 eLlvGs~D~~IRvf~~~--e~~~Ei~e~~-~v~~L~~~~~-~~F~Y~l~NGT-VGvY~~~----------------~RlW 75 (111)
T PF14783_consen 17 ELLVGSDDFEIRVFKGD--EIVAEITETD-KVTSLCSLGG-GRFAYALANGT-VGVYDRS----------------QRLW 75 (111)
T ss_pred eEEEecCCcEEEEEeCC--cEEEEEeccc-ceEEEEEcCC-CEEEEEecCCE-EEEEeCc----------------ceee
Confidence 44567889999999854 5677777654 6777776666 56899999998 8999753 3455
Q ss_pred EEeccCCcccEEEEEEcC---CCC-EEEEEeCCCcEE
Q 005349 373 RLQRGLTNAVIQDISFSD---DSN-WIMISSSRGTSH 405 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSp---Dg~-~lAsgS~dgTI~ 405 (701)
+... ...+.++++.. ||. -|++|-++|.|-
T Consensus 76 RiKS---K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS---KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc---CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5542 23366666654 332 577888888764
No 364
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=82.92 E-value=8.5 Score=43.41 Aligned_cols=90 Identities=17% Similarity=0.305 Sum_probs=58.7
Q ss_pred EEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEE-EcCC-
Q 005349 314 IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDIS-FSDD- 391 (701)
Q Consensus 314 i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~ia-FSpD- 391 (701)
...|....-.+.+|+.+|+|++.|+.+.-|+ |-|+|+..+ .+.++.+|...|.+.-+. ....
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~---------------~vvrmWKGYRdAqc~wi~~~~~~~ 363 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGR-VLLIDVARG---------------IVVRMWKGYRDAQCGWIEVPEEGD 363 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCc-EEEEECCCC---------------hhhhhhccCccceEEEEEeecccc
Confidence 3455555667899999999999999999998 899999886 222333455444322111 1111
Q ss_pred ---------------CCEEE-EEeCCCcEEEEecCCCCCceeec
Q 005349 392 ---------------SNWIM-ISSSRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 392 ---------------g~~lA-sgS~dgTI~Iwdl~~~g~~~~~~ 419 (701)
..+|+ -+-.+|.|-||.+........++
T Consensus 364 ~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 364 RDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cccccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 12344 46679999999998765555554
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=81.66 E-value=7.7 Score=43.18 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=48.3
Q ss_pred CeEEEEEcCCCCEEEEE-eCCC---cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEE
Q 005349 323 PISALCFDPSGILLVTA-SVQG---HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTa-S~dG---t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsg 398 (701)
.+...++||||++||-+ +..| ..++|+|+.++ ..+-.. .....-..++|++|++.|...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--------------~~l~d~---i~~~~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--------------KFLPDG---IENPKFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--------------EEEEEE---EEEEESEEEEECTTSSEEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--------------cCcCCc---ccccccceEEEeCCCCEEEEE
Confidence 44568999999998865 4444 34899999987 333221 111122349999999988776
Q ss_pred eCCCc-----------EEEEecCCCCCc
Q 005349 399 SSRGT-----------SHLFAINPLGGS 415 (701)
Q Consensus 399 S~dgT-----------I~Iwdl~~~g~~ 415 (701)
..+.. |..|.+.+....
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~~ 215 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQSE 215 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GGG
T ss_pred EeCcccccccCCCCcEEEEEECCCChHh
Confidence 65442 666777654433
No 366
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=81.12 E-value=72 Score=38.49 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=48.4
Q ss_pred CCeEEEEEc--CCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCC---C---
Q 005349 322 SPISALCFD--PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS---N--- 393 (701)
Q Consensus 322 ~~Is~laFS--PdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg---~--- 393 (701)
..+..|++. ...++||.++.. +.|.||-....... ..+.... ...+.|-+|+|-++. .
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs-~~VTVFaf~l~~~r----------~~~~~s~---~~~hNIP~VSFl~~~~d~~G~v 229 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNS-QEVTVFAFALVDER----------FYHVPSH---QHSHNIPNVSFLDDDLDPNGHV 229 (717)
T ss_pred CceeEEEEEecCcceEEEEecCC-ceEEEEEEeccccc----------ccccccc---ccccCCCeeEeecCCCCCccce
Confidence 377889998 777777766655 55899876542100 0010011 123459999997643 3
Q ss_pred EEEEEeCCCcEEEEec
Q 005349 394 WIMISSSRGTSHLFAI 409 (701)
Q Consensus 394 ~lAsgS~dgTI~Iwdl 409 (701)
+|++++-.|++-+|++
T Consensus 230 ~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 230 KVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEeccCcEEEEEE
Confidence 8999999999999888
No 367
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=80.80 E-value=11 Score=41.01 Aligned_cols=113 Identities=14% Similarity=0.234 Sum_probs=72.7
Q ss_pred CCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCC-CCC-CCC------Cc----------cCCC------
Q 005349 310 SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP-GIL-GTS------SA----------CDAG------ 365 (701)
Q Consensus 310 s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~-~~~-~~~------s~----------~~~~------ 365 (701)
.-..++...+|...|..+-|+-.-+++++++.|.. -.|-... ++. |.. +. ++.+
T Consensus 103 km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~--~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~l 180 (404)
T KOG1409|consen 103 KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ--FAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITML 180 (404)
T ss_pred hcchhhhhhhhhcceeeEEecCCceeEEEeccccc--eEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEE
Confidence 33455566689999999999999999999888854 3453322 110 000 00 0000
Q ss_pred ----CceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCce-eecCCCCCcc
Q 005349 366 ----TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV-NFQPTDANFT 426 (701)
Q Consensus 366 ----~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~-~~~~H~~~~~ 426 (701)
.....++++ +|++ ..|.+++|.+-.+.|.++..|..+.+||+--..+.. .+++|.+.+.
T Consensus 181 r~~~~~~~~i~~~-~~h~-~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 181 KLEQNGCQLITTF-NGHT-GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ 244 (404)
T ss_pred EEeecCCceEEEE-cCcc-cceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence 011223333 4554 459999999999999999999999999997655543 5677765544
No 368
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=80.28 E-value=77 Score=32.82 Aligned_cols=40 Identities=20% Similarity=0.458 Sum_probs=28.5
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeC
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPR 59 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~ 59 (701)
+..|++|.+.|+-++++.......+++.... |.-+.++|.
T Consensus 7 ~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~--I~ql~vl~~ 46 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDLSDPSKPTRILKLSS--ITQLSVLPE 46 (275)
T ss_pred CCEEEEEECCCEEEEEecCCccceeEeecce--EEEEEEecc
Confidence 5678888999999999944455555555333 887777763
No 369
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=80.17 E-value=1.1e+02 Score=34.45 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=52.1
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEE-----cCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCF-----DPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laF-----SPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
.+..|+|+...+.+.........-.+..++| ...+..|++-..+|+ |++|.+..- +.+.+
T Consensus 233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~-i~i~SLP~L--------------kei~~ 297 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGS-IRIYSLPSL--------------KEIKS 297 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE-EEEEETTT----------------EEEE
T ss_pred cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCc-EEEEECCCc--------------hHhhc
Confidence 3457899988877665444322223344566 347888999999997 999999764 45555
Q ss_pred Eecc--CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 374 LQRG--LTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 374 l~rG--~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
+.-. .....+...+|+++|..+.-.+. ..+.+|.+-
T Consensus 298 ~~l~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv~ 335 (395)
T PF08596_consen 298 VSLPPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFSVW 335 (395)
T ss_dssp EE-SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEEEE
T ss_pred ccCCCccccccccccEECCCCCEEEEeCc-ccEEEEEEE
Confidence 4321 11112557888999997776654 355555553
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=78.51 E-value=13 Score=43.84 Aligned_cols=103 Identities=14% Similarity=0.203 Sum_probs=60.0
Q ss_pred CCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
.+.+.+.++..+.... .....|..+.|||||+.||-.. +|+ |.|=-+.....|. ........+.-+..
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~-v~Va~Vvr~~~G~-------~~l~~~~~l~~~l~ 496 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGK-VYLAVVEQTEDGQ-------YALTNPREVGPGLG 496 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCE-EEEEEEEeCCCCc-------eeecccEEeecccC
Confidence 4566666776654432 3356799999999999988876 455 5663332210110 00011122322222
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCce
Q 005349 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV 416 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~ 416 (701)
. .+.++.|..|++.+ ++..++...+|.++-.|...
T Consensus 497 ~-~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~ 531 (591)
T PRK13616 497 D-TAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNS 531 (591)
T ss_pred C-ccccceEecCCEEE-EEecCCCCceEEEecCCccc
Confidence 1 25789999999855 66666667788876655443
No 371
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=76.08 E-value=21 Score=40.04 Aligned_cols=83 Identities=18% Similarity=0.306 Sum_probs=55.2
Q ss_pred EEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe-c-----cCCcccEEEE
Q 005349 313 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-R-----GLTNAVIQDI 386 (701)
Q Consensus 313 ~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~-r-----G~~~a~I~~i 386 (701)
+..-+....++|++|+.| |=-++|.|..+|+ +-|.|++-. .-+|+-. + ......|.++
T Consensus 78 P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~-l~viD~RGP--------------avI~~~~i~~~~~~~~~~~~vt~i 141 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNS-DIGFVAIGYESGS-LVVIDLRGP--------------AVIYNENIRESFLSKSSSSYVTSI 141 (395)
T ss_dssp EEEEE---S-SEEEEEE--BTSEEEEEETTSE-EEEEETTTT--------------EEEEEEEGGG--T-SS----EEEE
T ss_pred chhheeccCCcEeEEecC-CCcEEEEEecCCc-EEEEECCCC--------------eEEeeccccccccccccccCeeEE
Confidence 555666678999999998 4457999999997 899999654 4444421 1 1122238888
Q ss_pred EEcC-----CC---CEEEEEeCCCcEEEEecCC
Q 005349 387 SFSD-----DS---NWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 387 aFSp-----Dg---~~lAsgS~dgTI~Iwdl~~ 411 (701)
.|+- |+ -.|.+|++.|++.+|.|-+
T Consensus 142 eF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 142 EFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp EEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred EEEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 8872 44 4688999999999999975
No 372
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=75.67 E-value=17 Score=34.53 Aligned_cols=45 Identities=11% Similarity=0.173 Sum_probs=35.7
Q ss_pred CCcEEEEEecCCCEEEEEec-------CCEEEEEeCCEEEEEECCCCceeEE
Q 005349 126 SQSYVHMLKFRSPIYSVRCS-------SRVVAICQAAQVHCFDAATLEIEYA 170 (701)
Q Consensus 126 tg~~v~tL~f~s~V~sV~~s-------~~~LaVa~~~~I~iwDl~t~~~~~t 170 (701)
....+..|++...|.+|+.. .+.|.++....+.+||...-..++.
T Consensus 37 ~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fy 88 (136)
T PF14781_consen 37 QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFY 88 (136)
T ss_pred ccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhh
Confidence 44578889999999998772 4789999999999999987654433
No 373
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.44 E-value=3.5 Score=49.48 Aligned_cols=88 Identities=22% Similarity=0.272 Sum_probs=65.5
Q ss_pred cEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCC
Q 005349 312 NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 391 (701)
Q Consensus 312 ~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpD 391 (701)
+....|+.|+...+|++||-+...|+.|+..|. |+||++.+|.. ..-+. +| .+.|+-|.=|.|
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Ge-ik~~nv~sG~~------------e~s~n---cH-~SavT~vePs~d 1154 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGE-IKIFNVSSGSM------------EESVN---CH-QSAVTLVEPSVD 1154 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccce-EEEEEccCccc------------ccccc---cc-ccccccccccCC
Confidence 466788899999999999999999999999998 99999988721 11111 22 234777777889
Q ss_pred CCEEEEEeCCC--cEEEEecCCCCCce
Q 005349 392 SNWIMISSSRG--TSHLFAINPLGGSV 416 (701)
Q Consensus 392 g~~lAsgS~dg--TI~Iwdl~~~g~~~ 416 (701)
|..+.+.|.-. -.-+|++...++..
T Consensus 1155 gs~~Ltsss~S~PlsaLW~~~s~~~~~ 1181 (1516)
T KOG1832|consen 1155 GSTQLTSSSSSSPLSALWDASSTGGPR 1181 (1516)
T ss_pred cceeeeeccccCchHHHhccccccCcc
Confidence 88877665533 47899997655543
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=75.11 E-value=22 Score=38.52 Aligned_cols=75 Identities=16% Similarity=0.301 Sum_probs=44.5
Q ss_pred CCeEEEEEcCCCCEEEEEeC---CCc-----EEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCC
Q 005349 322 SPISALCFDPSGILLVTASV---QGH-----NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN 393 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~---dGt-----~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~ 393 (701)
..-+.+..+|+|.+-++... .+. .-.||.+.+. -+..++..+. -..=+.||||||++
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~--------------g~~~~l~~~~-~~~~NGla~SpDg~ 175 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD--------------GGVVRLLDDD-LTIPNGLAFSPDGK 175 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC--------------CCEEEeecCc-EEecCceEECCCCC
Confidence 45677899999998877554 111 0134444432 0111222220 01135899999998
Q ss_pred EEEEEeC-CCcEEEEecCC
Q 005349 394 WIMISSS-RGTSHLFAINP 411 (701)
Q Consensus 394 ~lAsgS~-dgTI~Iwdl~~ 411 (701)
.|..+-. .+.|+-|++..
T Consensus 176 tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 176 TLYVADTPANRIHRYDLDP 194 (307)
T ss_pred EEEEEeCCCCeEEEEecCc
Confidence 7776655 48899998875
No 375
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=73.79 E-value=2.4 Score=50.93 Aligned_cols=106 Identities=14% Similarity=0.235 Sum_probs=60.6
Q ss_pred cCCCCeEEEEECCCCcEEEEeecCCCCeEEEE-----------EcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCC
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALC-----------FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAG 365 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~la-----------FSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~ 365 (701)
+..+|.|++..+..-. ...|+.|...+..++ .||||+.||+++.||. ++.|.+.-. | .
T Consensus 201 ~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi~--g-------~ 269 (1283)
T KOG1916|consen 201 GLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYIT--G-------K 269 (1283)
T ss_pred ccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeeee--c-------c
Confidence 4456777775544321 145566765555443 5999999999999997 788876422 0 0
Q ss_pred CceeEEEEEeccCCcc-cEEEEEEcCC-------CCE--EEEEeCC-CcEEEEecCCCCCc
Q 005349 366 TSYVHLYRLQRGLTNA-VIQDISFSDD-------SNW--IMISSSR-GTSHLFAINPLGGS 415 (701)
Q Consensus 366 ~~~~~l~~l~rG~~~a-~I~~iaFSpD-------g~~--lAsgS~d-gTI~Iwdl~~~g~~ 415 (701)
...+|++..+ -++.+ +|..+ |..+ ++| ++++++- ..+++|.-.+..+.
T Consensus 270 ~~~rclhewk-phd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 270 IVHRCLHEWK-PHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccHhhhhccC-CCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 0124444432 22222 24444 2211 333 4555554 45999998887776
No 376
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=73.76 E-value=37 Score=40.39 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=65.3
Q ss_pred CCeEEEEECCCCcEEEEee-cCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE-e
Q 005349 300 VGMVIVRDIVSKNVIAQFR-AHKSPISALCFD--PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL-Q 375 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~-~H~~~Is~laFS--PdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l-~ 375 (701)
...+.|||...+.....-. ....+|.++.|. |||+.+.+.+...+ |.++.-... ....... ....+.++ -
T Consensus 50 ~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~-v~l~~Q~R~-dy~~~~p----~w~~i~~i~i 123 (631)
T PF12234_consen 50 RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH-VLLYTQLRY-DYTNKGP----SWAPIRKIDI 123 (631)
T ss_pred CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE-EEEEEccch-hhhcCCc----ccceeEEEEe
Confidence 3579999999876432222 446789998775 58999998888866 778753221 0000000 11222222 1
Q ss_pred ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 376 rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
+.++++.|.+.+|-+||..++.++ .-+.||+-
T Consensus 124 ~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 124 SSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred ecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 567778899999999997776553 46788764
No 377
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=73.32 E-value=8.9 Score=27.58 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=20.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEE
Q 005349 319 AHKSPISALCFDPSGILLVTASVQG--HNINIF 349 (701)
Q Consensus 319 ~H~~~Is~laFSPdG~lLaTaS~dG--t~I~Iw 349 (701)
.....-.+.+|||||+.|+-++... ....||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445667889999999988777653 224555
No 378
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=73.28 E-value=7.1 Score=46.80 Aligned_cols=56 Identities=18% Similarity=0.337 Sum_probs=47.0
Q ss_pred ccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 005349 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~ 352 (701)
.+-.-|.+.+|...+.+.-..-..|..+|.-|.|||||+.|+|++.-|. +.+|...
T Consensus 76 ~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~-v~lwr~d 131 (1416)
T KOG3617|consen 76 QGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGS-VHLWRYD 131 (1416)
T ss_pred hccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCce-eEEEEee
Confidence 3455688999998877665555689999999999999999999999985 8999765
No 379
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=71.86 E-value=64 Score=35.85 Aligned_cols=94 Identities=15% Similarity=0.252 Sum_probs=62.9
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE-----
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR----- 373 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~----- 373 (701)
..+.|.+.|-.+++.+.....-..| ..++|+|+|+.+..+..+...|.++|.... .+.+
T Consensus 138 ~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~---------------~v~~~~~~~ 201 (381)
T COG3391 138 GNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN---------------SVVRGSVGS 201 (381)
T ss_pred CCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc---------------ceecccccc
Confidence 3578999999999888886655556 889999999977666644445899996543 1111
Q ss_pred -EeccCCcccEEEEEEcCCCCEEEEEeCC---CcEEEEecCC
Q 005349 374 -LQRGLTNAVIQDISFSDDSNWIMISSSR---GTSHLFAINP 411 (701)
Q Consensus 374 -l~rG~~~a~I~~iaFSpDg~~lAsgS~d---gTI~Iwdl~~ 411 (701)
...+.. -..++++|||+++-..-.. +++-+.|..+
T Consensus 202 ~~~~~~~---P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 202 LVGVGTG---PAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred ccccCCC---CceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 111111 3578999999976655443 4666666544
No 380
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=71.11 E-value=9 Score=27.56 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=19.4
Q ss_pred cEEEEEEcCCCCEEEEEeCC---CcEEEE
Q 005349 382 VIQDISFSDDSNWIMISSSR---GTSHLF 407 (701)
Q Consensus 382 ~I~~iaFSpDg~~lAsgS~d---gTI~Iw 407 (701)
.-...+|||||++|+-++.. |...||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 46788999999999977664 666666
No 381
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=67.26 E-value=25 Score=43.99 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=52.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCC
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d 401 (701)
..|.++.|--++.-++.+..+|. |.+-|..+. ..... |....-|.+++||||.+++|..+.+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~-iilvd~et~------------~~eiv-----g~vd~GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGD-IILVDPETL------------ELEIV-----GNVDNGISAASWSPDEELLALITGR 130 (1265)
T ss_pred cceEEEEEecccceEEEEecCCc-EEEEccccc------------ceeee-----eeccCceEEEeecCCCcEEEEEeCC
Confidence 57899999999999999999998 555566553 11222 3333349999999999999999999
Q ss_pred CcEEEE
Q 005349 402 GTSHLF 407 (701)
Q Consensus 402 gTI~Iw 407 (701)
+|+.+-
T Consensus 131 ~tll~m 136 (1265)
T KOG1920|consen 131 QTLLFM 136 (1265)
T ss_pred cEEEEE
Confidence 998763
No 382
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=66.64 E-value=44 Score=37.12 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=58.1
Q ss_pred CCCCeEEEEECCCCcEEEE-eecCCCCeEEEEEcCCCCEEEEEeCCC----------cEEEEEEcCCCCCCCCCccCCCC
Q 005349 298 DNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQG----------HNINIFKIIPGILGTSSACDAGT 366 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~-~~~H~~~Is~laFSPdG~lLaTaS~dG----------t~I~Iwdl~~~~~~~~s~~~~~~ 366 (701)
+..-.++|+|+.+++.+.. |..- .-..++|.+||+.|.....+. ..|..|++.+.. .
T Consensus 147 ~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~----------~ 214 (414)
T PF02897_consen 147 SEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ----------S 214 (414)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-G----------G
T ss_pred CceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCCh----------H
Confidence 4446899999999987653 2321 112399999999877665433 335555655431 1
Q ss_pred ceeEEEEEeccCCccc-EEEEEEcCCCCEEEEEeCCCc----EEEEecCC
Q 005349 367 SYVHLYRLQRGLTNAV-IQDISFSDDSNWIMISSSRGT----SHLFAINP 411 (701)
Q Consensus 367 ~~~~l~~l~rG~~~a~-I~~iaFSpDg~~lAsgS~dgT----I~Iwdl~~ 411 (701)
.-..++.- ..... ..++..|+|+++|...+..++ +++.++..
T Consensus 215 ~d~lvfe~---~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 215 EDELVFEE---PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp G-EEEEC----TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred hCeeEEee---cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 11344433 22233 678999999999887555443 45555544
No 383
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=66.43 E-value=34 Score=24.54 Aligned_cols=24 Identities=13% Similarity=0.337 Sum_probs=18.6
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCC
Q 005349 331 PSGILLVTASVQGHNINIFKIIPG 354 (701)
Q Consensus 331 PdG~lLaTaS~dGt~I~Iwdl~~~ 354 (701)
|||+.|..+......|.++|..++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~ 24 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN 24 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC
Confidence 688877777765566999998765
No 384
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=66.22 E-value=73 Score=36.21 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=53.7
Q ss_pred CCCeEEEEECCCCcEEEEeecC-CC-CeEEEEEcCC--CCEE-EEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAH-KS-PISALCFDPS--GILL-VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H-~~-~Is~laFSPd--G~lL-aTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
.-..+++||+.+.+.++++.-- .+ -...|.|-.+ ..+= +.+--..++.++|....+ .| ..+.+.+
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g--------~W--~a~kVi~ 289 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG--------EW--AAEKVID 289 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT--------EE--EEEEEEE
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC--------Ce--eeeEEEE
Confidence 4468999999999999988732 22 3446777654 4443 333333333344433322 01 1122222
Q ss_pred Eec---------------cCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCCce
Q 005349 374 LQR---------------GLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSV 416 (701)
Q Consensus 374 l~r---------------G~~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~~g~~~ 416 (701)
+.- +..+.-|++|..|.|.++|-.++ .+|.|+.|||+....+.
T Consensus 290 ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 290 IPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp E--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred CCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCc
Confidence 210 01133489999999999998665 59999999998765553
No 385
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.30 E-value=3.3e+02 Score=33.44 Aligned_cols=51 Identities=6% Similarity=0.126 Sum_probs=36.9
Q ss_pred CeEEEEECCCCcE-EEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCC
Q 005349 301 GMVIVRDIVSKNV-IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 353 (701)
Q Consensus 301 G~V~IwDl~s~~~-i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~ 353 (701)
..|.+|.+..+.+ +..+..|..++.|.+|++.-..|+.|+..+ +..||...
T Consensus 193 ~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~--l~fY~sd~ 244 (933)
T KOG2114|consen 193 EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF--LYFYDSDG 244 (933)
T ss_pred ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce--EEEEcCCC
Confidence 4588888885553 445778889999999998655466666543 78898764
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=64.81 E-value=2e+02 Score=30.63 Aligned_cols=56 Identities=7% Similarity=0.156 Sum_probs=40.8
Q ss_pred cEEEEEECCCCcEEEEEecCCCEE--EEEe-cCCEEEEE-eCCEEEEEECCCCceeEEEe
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIY--SVRC-SSRVVAIC-QAAQVHCFDAATLEIEYAIL 172 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~--sV~~-s~~~LaVa-~~~~I~iwDl~t~~~~~tl~ 172 (701)
..|+.+|+.||+.+....++.... .|.. +.++.... .+++.++||..|++.+.++.
T Consensus 68 S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~ 127 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP 127 (264)
T ss_dssp EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEe
Confidence 679999999999999998877654 3444 34444443 57899999999998877663
No 387
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=63.94 E-value=2.3 Score=49.29 Aligned_cols=103 Identities=10% Similarity=0.144 Sum_probs=68.1
Q ss_pred cCCCCeEEEEECCCCcE--EEEeecCCCCeEEEEEcC-CCCEEEEEeCC---CcEEEEEEcCCCCCCCCCccCCCCceeE
Q 005349 297 ADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDP-SGILLVTASVQ---GHNINIFKIIPGILGTSSACDAGTSYVH 370 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~--i~~~~~H~~~Is~laFSP-dG~lLaTaS~d---Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~ 370 (701)
+..+|.|.+-.+....- -....+|..++++++|++ |...||.|=+. ...+.|||+.+....+ ..
T Consensus 76 G~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP----------ke 145 (783)
T KOG1008|consen 76 GSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP----------KE 145 (783)
T ss_pred ccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC----------cc
Confidence 44568888877665432 234568889999999999 66777766221 1348999998762100 11
Q ss_pred EEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 371 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 371 l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
-..|..+ +-....++||-.|-+.|.+|...+.+|+||+.
T Consensus 146 ~~~fs~~-~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR 184 (783)
T KOG1008|consen 146 SPLFSSS-TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR 184 (783)
T ss_pred ccccccc-cccCccccccccCcchhhcccccchhhhhhhh
Confidence 1112111 11125589999999999999999999999997
No 388
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=63.55 E-value=37 Score=38.78 Aligned_cols=85 Identities=11% Similarity=0.184 Sum_probs=46.7
Q ss_pred CCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
..++.|.+||+.+++.++.+... +|..|-||++|+++|-.+.+. |.|++............|.+.....++++
T Consensus 123 ~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~--i~il~~~~~~~~~~~~~g~e~~f~~~~E~--- 195 (443)
T PF04053_consen 123 KSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS--IYILKYNLEAVAAIPEEGVEDAFELIHEI--- 195 (443)
T ss_dssp EETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S--EEEEEE-HHHHHHBTTTB-GGGEEEEEEE---
T ss_pred ECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe--EEEEEecchhcccccccCchhceEEEEEe---
Confidence 34568999999999999998754 489999999999999999884 56665432100000011222233444443
Q ss_pred CCcccEEEEEEcCC
Q 005349 378 LTNAVIQDISFSDD 391 (701)
Q Consensus 378 ~~~a~I~~iaFSpD 391 (701)
..+|.+.+|--|
T Consensus 196 --~~~IkSg~W~~d 207 (443)
T PF04053_consen 196 --SERIKSGCWVED 207 (443)
T ss_dssp ---S--SEEEEETT
T ss_pred --cceeEEEEEEcC
Confidence 234888888776
No 389
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.99 E-value=1e+02 Score=35.73 Aligned_cols=90 Identities=11% Similarity=0.242 Sum_probs=55.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCcc-CCCCceeEEE-----EEeccCCcccEEEEEEcCCC---
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSAC-DAGTSYVHLY-----RLQRGLTNAVIQDISFSDDS--- 392 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~-~~~~~~~~l~-----~l~rG~~~a~I~~iaFSpDg--- 392 (701)
-.|..+..|+.|...|-++.+| |-|-.+... .|..+.. +.-..+.|.- ++....+.-.+...+|.||+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~G--i~vMeLp~r-wG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKG--LMVMELPKR-WGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred EEEEEEEecCCCceEEEecCCe--eEEEEchhh-cCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCC
Confidence 4677889999999999999998 455555321 1222211 1111111110 01111122237789999986
Q ss_pred CEEEEEeCCCcEEEEecCCCCC
Q 005349 393 NWIMISSSRGTSHLFAINPLGG 414 (701)
Q Consensus 393 ~~lAsgS~dgTI~Iwdl~~~g~ 414 (701)
..|..-++|.+|+||+++....
T Consensus 181 ~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred ceEEEEecCcEEEEEecCCcch
Confidence 6788888999999999986543
No 390
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.61 E-value=45 Score=35.30 Aligned_cols=86 Identities=13% Similarity=0.015 Sum_probs=58.9
Q ss_pred ccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe
Q 005349 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~ 375 (701)
-+...|.+.+.+..+|..+..|..-..-=..-..++||.++-.+|.||+ +..-|.++. .++|+.+
T Consensus 68 ~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~-~yalD~~~~--------------~cVyksk 132 (354)
T KOG4649|consen 68 LGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGN-FYALDPKTY--------------GCVYKSK 132 (354)
T ss_pred EEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCc-EEEeccccc--------------ceEEecc
Confidence 4567789999999999888877754322222457899999999999998 788888765 6788876
Q ss_pred ccCCcccEEEEEEcC-CCCEEEEE
Q 005349 376 RGLTNAVIQDISFSD-DSNWIMIS 398 (701)
Q Consensus 376 rG~~~a~I~~iaFSp-Dg~~lAsg 398 (701)
-|-. ...+=+..| |+...++.
T Consensus 133 cgG~--~f~sP~i~~g~~sly~a~ 154 (354)
T KOG4649|consen 133 CGGG--TFVSPVIAPGDGSLYAAI 154 (354)
T ss_pred cCCc--eeccceecCCCceEEEEe
Confidence 4432 123344555 55544443
No 391
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=62.50 E-value=57 Score=31.95 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=25.0
Q ss_pred cEEEEEEcCCC------CEEEEEeCCCcEEEEecCC
Q 005349 382 VIQDISFSDDS------NWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 382 ~I~~iaFSpDg------~~lAsgS~dgTI~Iwdl~~ 411 (701)
.|..++|||-| ..||+-+.++.+.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 58899999943 4699999999999998654
No 392
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.04 E-value=1.1e+02 Score=33.04 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=33.8
Q ss_pred CCCeEEEEECCCC-cEEEEeecCCCCeEEEEEcCCCCEEEEEe
Q 005349 299 NVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDPSGILLVTAS 340 (701)
Q Consensus 299 ~dG~V~IwDl~s~-~~i~~~~~H~~~Is~laFSPdG~lLaTaS 340 (701)
.-|.|-|||...+ +.+.+|..|.-.--.|.+.+||++|+.+.
T Consensus 138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 3588999998854 56778888876667789999999999875
No 393
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=61.36 E-value=76 Score=33.13 Aligned_cols=74 Identities=12% Similarity=0.214 Sum_probs=47.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEE-cCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC-
Q 005349 323 PISALCFDPSGILLVTASVQGHNINIFK-IIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS- 400 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTaS~dGt~I~Iwd-l~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~- 400 (701)
.+..-+|+++|.+.+....+.. .+++. ...+ . .....+........|..+.+||||..+|....
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g------------~-~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~ 132 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASG------------T-GEPVEVDWPGLRGRITALRVSPDGTRVAVVVED 132 (253)
T ss_pred ccccccccCCCCEEEEEcCCCc-eEEEEecCCC------------c-ceeEEecccccCCceEEEEECCCCcEEEEEEec
Confidence 7788899999998887776654 56664 2222 0 11112211111116999999999999998773
Q ss_pred --CCcEEEEecC
Q 005349 401 --RGTSHLFAIN 410 (701)
Q Consensus 401 --dgTI~Iwdl~ 410 (701)
++.|.|=.+.
T Consensus 133 ~~~~~v~va~V~ 144 (253)
T PF10647_consen 133 GGGGRVYVAGVV 144 (253)
T ss_pred CCCCeEEEEEEE
Confidence 4667766654
No 394
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=60.53 E-value=4.3e+02 Score=33.11 Aligned_cols=84 Identities=13% Similarity=0.221 Sum_probs=51.5
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEeCCC-------------cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcc
Q 005349 315 AQFRAHKSPISALCFDPSGILLVTASVQG-------------HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 381 (701)
Q Consensus 315 ~~~~~H~~~Is~laFSPdG~lLaTaS~dG-------------t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a 381 (701)
+++.-|. +...++|.+...++++.+... +.++++|-++. ..-+.+++.+-.+..
T Consensus 709 rtvpl~~-~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf------------~vl~~hef~~~E~~~ 775 (1096)
T KOG1897|consen 709 RTVPLGE-SPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF------------EVLSSHEFERNETAL 775 (1096)
T ss_pred eeecCCC-ChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCce------------eEEeeccccccceee
Confidence 3444443 446778888666666655322 23566665554 334555665443333
Q ss_pred cEEEEEEcCC-CCEEEEEeC----------CCcEEEEecCC
Q 005349 382 VIQDISFSDD-SNWIMISSS----------RGTSHLFAINP 411 (701)
Q Consensus 382 ~I~~iaFSpD-g~~lAsgS~----------dgTI~Iwdl~~ 411 (701)
.|.++.|..| ++++++|+. .|.|+||.+..
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE 816 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence 4667779988 899999875 46777777766
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=60.18 E-value=45 Score=36.06 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=39.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC
Q 005349 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 321 ~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
.+.+..+..++||+++|.++ .|..+.-||--. ...+.+. |. +..+|+.|.|+||+...+++ .
T Consensus 144 ~gs~~~~~r~~dG~~vavs~-~G~~~~s~~~G~-------------~~w~~~~--r~-~~~riq~~gf~~~~~lw~~~-~ 205 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSS-RGNFYSSWDPGQ-------------TTWQPHN--RN-SSRRIQSMGFSPDGNLWMLA-R 205 (302)
T ss_dssp ---EEEEEE-TTS-EEEEET-TSSEEEEE-TT--------------SS-EEEE-----SSS-EEEEEE-TTS-EEEEE-T
T ss_pred cceeEeEEECCCCcEEEEEC-cccEEEEecCCC-------------ccceEEc--cC-ccceehhceecCCCCEEEEe-C
Confidence 36788899999999888775 577666666321 1133333 33 34569999999998776655 5
Q ss_pred CCcEEEEe
Q 005349 401 RGTSHLFA 408 (701)
Q Consensus 401 dgTI~Iwd 408 (701)
.|-|+.=+
T Consensus 206 Gg~~~~s~ 213 (302)
T PF14870_consen 206 GGQIQFSD 213 (302)
T ss_dssp TTEEEEEE
T ss_pred CcEEEEcc
Confidence 66665544
No 396
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=59.96 E-value=1.7e+02 Score=31.37 Aligned_cols=43 Identities=12% Similarity=-0.002 Sum_probs=34.9
Q ss_pred EEEecCCCEEEEEecCCEEEEEeCCEEEEEECCCCceeEEEec
Q 005349 131 HMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 131 ~tL~f~s~V~sV~~s~~~LaVa~~~~I~iwDl~t~~~~~tl~t 173 (701)
..|.+.....++++...+|.+..++-|.|+++.+++.++++..
T Consensus 238 ~~l~w~~~p~~~~~~~pyll~~~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 238 PILHWEFMPESFAYHSPYLLAFHDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred eEEEcCCcccEEEEECCEEEEEcCCcEEEEECCCCceEEEEec
Confidence 3567888888888987777776788899999999998888754
No 397
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=59.06 E-value=3.5 Score=47.95 Aligned_cols=99 Identities=15% Similarity=0.237 Sum_probs=66.4
Q ss_pred CCCeEEEEECCCC--c--EEEEeec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 299 NVGMVIVRDIVSK--N--VIAQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 299 ~dG~V~IwDl~s~--~--~i~~~~~-H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
.+-.+.|||+.++ . .-..|.+ -....+.+|+..|-+++.+|.... .+++||++..+. .+ ..
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr-~~~ifdlRqs~~------------~~-~s 192 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR-SVHIFDLRQSLD------------SV-SS 192 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccc-hhhhhhhhhhhh------------hh-hh
Confidence 4557899999886 2 2234444 335667899999999999988875 489999974311 00 11
Q ss_pred EeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEe-cCCCCCce
Q 005349 374 LQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFA-INPLGGSV 416 (701)
Q Consensus 374 l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwd-l~~~g~~~ 416 (701)
+. | .-++.+..+| .+.|+|+-+ ||-|-+|| ......+.
T Consensus 193 vn---T-k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl 232 (783)
T KOG1008|consen 193 VN---T-KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL 232 (783)
T ss_pred hh---h-hhcccceecCCCCCceeccc-cCceeeccchhhhccHH
Confidence 10 1 1267788888 888998877 99999999 44444443
No 398
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=58.94 E-value=1.3e+02 Score=31.65 Aligned_cols=83 Identities=17% Similarity=0.306 Sum_probs=46.9
Q ss_pred EeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCE
Q 005349 316 QFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 394 (701)
Q Consensus 316 ~~~~H~~~Is~laFSPd-G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~ 394 (701)
.+.+-...++.|+|+|+ ++++|..+..+. |...+.. + .....+.| .| ....-+|++--++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~-i~els~~-G------------~vlr~i~l-~g--~~D~EgI~y~g~~~~ 78 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGE-IYELSLD-G------------KVLRRIPL-DG--FGDYEGITYLGNGRY 78 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTE-EEEEETT---------------EEEEEE--SS---SSEEEEEE-STTEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCE-EEEEcCC-C------------CEEEEEeC-CC--CCCceeEEEECCCEE
Confidence 34444457999999997 555666665554 5555542 3 12222333 23 245889999988877
Q ss_pred EEEEeCCCcEEEEecCCCCCc
Q 005349 395 IMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 395 lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
+++.-.++++.++++...+..
T Consensus 79 vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 79 VLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp EEEETTTTEEEEEEE----TT
T ss_pred EEEEcCCCcEEEEEEeccccc
Confidence 776666899999999665443
No 399
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=57.96 E-value=1.2e+02 Score=33.96 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=46.0
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEEEcCCCCCCCCCccC
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG---------------HNINIFKIIPGILGTSSACD 363 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG---------------t~I~Iwdl~~~~~~~~s~~~ 363 (701)
.+..|.=+|..+++.....+ ..+...+--|+||+++|-=+.|. ..|.||++..+
T Consensus 262 ~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~--------- 330 (386)
T PF14583_consen 262 QDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG--------- 330 (386)
T ss_dssp --EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTT---------
T ss_pred CceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC---------
Confidence 34566667777765432222 12566778899999886433221 13566777654
Q ss_pred CCCceeEEEE------EeccCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecC
Q 005349 364 AGTSYVHLYR------LQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAIN 410 (701)
Q Consensus 364 ~~~~~~~l~~------l~rG~~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~ 410 (701)
....+.+ ...|.....=--..|||||+||+-.| ..|..+||-+.
T Consensus 331 ---~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 331 ---RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp ---EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ---ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 1111111 11111110113478999999988554 57888888764
No 400
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=57.90 E-value=1.3e+02 Score=35.87 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=54.4
Q ss_pred EEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEc--CCC
Q 005349 315 AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFS--DDS 392 (701)
Q Consensus 315 ~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFS--pDg 392 (701)
.+|..--...+-+.-|.-++ +|..+.+++.+.|||...+ ...|+-.- .....|.++.|. |||
T Consensus 23 ~~~~T~i~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~--------------~lE~~~~f-~~~~~I~dLDWtst~d~ 86 (631)
T PF12234_consen 23 STFETGISNPSLISGSSIKK-IAVVDSSRSELTIWDTRSG--------------VLEYEESF-SEDDPIRDLDWTSTPDG 86 (631)
T ss_pred EEEecCCCCcceEeecccCc-EEEEECCCCEEEEEEcCCc--------------EEEEeeee-cCCCceeeceeeecCCC
Confidence 33443334556666666555 5555777888999999876 33232211 112359999984 799
Q ss_pred CEEEEEeCCCcEEEEecCC
Q 005349 393 NWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 393 ~~lAsgS~dgTI~Iwdl~~ 411 (701)
+.+.+.+-...|.|+.-..
T Consensus 87 qsiLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 87 QSILAVGFPHHVLLYTQLR 105 (631)
T ss_pred CEEEEEEcCcEEEEEEccc
Confidence 9999999999999987643
No 401
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.71 E-value=63 Score=33.17 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=46.0
Q ss_pred EcCCCCEEEEEeCCCcEEEEEEcCCCCC--CCCCccCCCCceeEEEE----EeccCCcccEEEEEEcCCCCEEEEEeCCC
Q 005349 329 FDPSGILLVTASVQGHNINIFKIIPGIL--GTSSACDAGTSYVHLYR----LQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (701)
Q Consensus 329 FSPdG~lLaTaS~dGt~I~Iwdl~~~~~--~~~s~~~~~~~~~~l~~----l~rG~~~a~I~~iaFSpDg~~lAsgS~dg 402 (701)
+..+|.+|+.-..+|. +++||+..... ...+. ..+.. ..+ .....|..+.++.+|.-|++-+ +|
T Consensus 18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si-------~pll~~~~~~~~-~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVSI-------APLLNSSPVSDK-SSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCccH-------HHHhcccccccC-CCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 4567888888899997 99999987621 00000 00000 000 1223488899999998887765 47
Q ss_pred cEEEEecCC
Q 005349 403 TSHLFAINP 411 (701)
Q Consensus 403 TI~Iwdl~~ 411 (701)
....|+.+-
T Consensus 88 ~~y~y~~~L 96 (219)
T PF07569_consen 88 DSYSYSPDL 96 (219)
T ss_pred CEEEecccc
Confidence 788888754
No 402
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=55.33 E-value=25 Score=41.01 Aligned_cols=72 Identities=25% Similarity=0.362 Sum_probs=40.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEE---------EEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEE
Q 005349 325 SALCFDPSGILLVTASVQGHNINI---------FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWI 395 (701)
Q Consensus 325 s~laFSPdG~lLaTaS~dGt~I~I---------wdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~l 395 (701)
-.|+|+|+|.+++.-+..+...+| |++... .|.- ..........+.+|-.+...++++.++|+||++.|
T Consensus 439 DNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~-~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tl 516 (524)
T PF05787_consen 439 DNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARN-DGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTL 516 (524)
T ss_pred CceEECCCCCEEEEeCCCCCCcccccccccCceeeeeec-ccce-eeeccccccceeeeccCCCCcccccceECCCCCEE
Confidence 348999999988876655542222 222100 0000 00000111344555566677789999999999988
Q ss_pred EEE
Q 005349 396 MIS 398 (701)
Q Consensus 396 Asg 398 (701)
.+.
T Consensus 517 Fvn 519 (524)
T PF05787_consen 517 FVN 519 (524)
T ss_pred EEE
Confidence 763
No 403
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=53.38 E-value=2.4e+02 Score=29.59 Aligned_cols=108 Identities=13% Similarity=0.279 Sum_probs=64.3
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 294 FPDADNVGMVIVRDIVSKNVIAQFRAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~i~~~~~H-~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
++..+.++.|..+|.. ++.+..+.-. .+-.-.|++--+|.++++--.+++ +.++++..... . -......
T Consensus 37 faV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~-L~~~~~~~~~~-~-------~~~~~~~ 106 (248)
T PF06977_consen 37 FAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQR-LYIFTIDDDTT-S-------LDRADVQ 106 (248)
T ss_dssp EEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTE-EEEEEE----T-T---------EEEEE
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCc-EEEEEEecccc-c-------cchhhce
Confidence 3445677889889974 7788877633 246778899888887776655765 78888854310 0 0111222
Q ss_pred EEeccCC---cccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 373 RLQRGLT---NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 373 ~l~rG~~---~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
++.-+.. +..+-.|||.+.++.|.++-.+....||.+..
T Consensus 107 ~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 107 KISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred EEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 2222222 23389999999888888888887888887764
No 404
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=50.97 E-value=82 Score=33.42 Aligned_cols=58 Identities=7% Similarity=0.109 Sum_probs=43.7
Q ss_pred CCcEEEEEECCCCcEEEEEecCCCEEEEEecCCEEEE-EeCCEEEEEECCCCceeEEEe
Q 005349 115 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAIL 172 (701)
Q Consensus 115 ~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t~~~~~tl~ 172 (701)
..++..+||..+-+.+.++.++..=+.++..++.|.+ -...+|+++|..+++...++.
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred cCCeEEEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEE
Confidence 3488999999999999999999888899987655554 567899999999999887774
No 405
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=50.37 E-value=38 Score=39.38 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=39.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCc-----EEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEE
Q 005349 324 ISALCFDPSGILLVTASVQGH-----NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (701)
Q Consensus 324 Is~laFSPdG~lLaTaS~dGt-----~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsg 398 (701)
.-.|+|+|.|.+.+.-+..+. ..-+|.+.+. ......+..+.++...+++...|||||++.|..+
T Consensus 502 PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~----------~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 502 PDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTP----------DPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred CCceEECCCCCEEEEecCCCCccCcccccccccccC----------CCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 455899999998876543321 1223322111 1122345556566666789999999999877654
No 406
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=49.90 E-value=81 Score=27.61 Aligned_cols=49 Identities=24% Similarity=0.242 Sum_probs=33.9
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~ 352 (701)
|.|..||-..-+. ...+ -..-+.|.+||++++|..++.-++.|++|...
T Consensus 36 ~~Vvyyd~~~~~~--va~g-~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKEVKV--VASG-FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCEeEE--eecc-CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 5677788643221 2222 23446799999999999999887889998764
No 407
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.58 E-value=29 Score=35.59 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=30.0
Q ss_pred EEEecCCCEEEEEecCCEE-EEEeCCEEEEEECCCCcee
Q 005349 131 HMLKFRSPIYSVRCSSRVV-AICQAAQVHCFDAATLEIE 168 (701)
Q Consensus 131 ~tL~f~s~V~sV~~s~~~L-aVa~~~~I~iwDl~t~~~~ 168 (701)
-.|...+++.-+.+++++| |+..++.+++||+.+++..
T Consensus 7 P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 7 PPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred CcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 4566788888888887655 5588999999999998753
No 408
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=49.51 E-value=6.8 Score=39.66 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=17.9
Q ss_pred ccEEEEccCccEEE--EeeeeccC
Q 005349 521 NHLLVFSPSGCMIQ--YALRISTG 542 (701)
Q Consensus 521 ~~l~v~~p~g~~~~--~~l~~~~~ 542 (701)
..|-||+|||||+| |.++....
T Consensus 6 raltvFSPDGhL~QVEYAqEAvrk 29 (249)
T KOG0183|consen 6 RALTVFSPDGHLFQVEYAQEAVRK 29 (249)
T ss_pred cceEEECCCCCEEeeHhHHHHHhc
Confidence 35889999999999 88876643
No 409
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=48.83 E-value=32 Score=40.71 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=57.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC
Q 005349 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 321 ~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
...|.--||+-.+++|+-|+.-|- +.+|.-..+ ...+++.. | ....+..++.|++..++|+|+.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~-lyl~~R~~~-------------~~~~~~~~-~-~~~~~~~~~vs~~e~lvAagt~ 96 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGS-VYLYNRHTG-------------EMRKLKNE-G-ATGITCVRSVSSVEYLVAAGTA 96 (726)
T ss_pred cceEEEEEeecCCceEEEecccce-EEEEecCch-------------hhhccccc-C-ccceEEEEEecchhHhhhhhcC
Confidence 345666788999999999999986 899986554 11222321 2 2233667889999999999999
Q ss_pred CCcEEEEecCCCC
Q 005349 401 RGTSHLFAINPLG 413 (701)
Q Consensus 401 dgTI~Iwdl~~~g 413 (701)
.|.|-||.++...
T Consensus 97 ~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 97 SGRVSVFQLNKEL 109 (726)
T ss_pred CceEEeehhhccC
Confidence 9999999998733
No 410
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=46.82 E-value=77 Score=36.83 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=27.4
Q ss_pred EEEEEEcC----CCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 383 IQDISFSD----DSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 383 I~~iaFSp----Dg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
..+++++. +..+|++-+.|+++|||++.+.....+.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 55666666 7889999999999999999987664433
No 411
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=44.93 E-value=7.1 Score=47.14 Aligned_cols=96 Identities=21% Similarity=0.243 Sum_probs=57.2
Q ss_pred CCCeEEEEECC--CCcEEEEeecC-----CC---CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCce
Q 005349 299 NVGMVIVRDIV--SKNVIAQFRAH-----KS---PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY 368 (701)
Q Consensus 299 ~dG~V~IwDl~--s~~~i~~~~~H-----~~---~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~ 368 (701)
..|...|||++ .|+...++.-| .. -|.-.-|-++.-++..+..+|+ |++-.+...
T Consensus 151 ~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~-i~lL~~~ra-------------- 215 (1283)
T KOG1916|consen 151 LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE-IRLLNINRA-------------- 215 (1283)
T ss_pred HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc-eeEeeechH--------------
Confidence 45778889875 34433333322 22 3333445556666766666666 787766542
Q ss_pred eEEEEEeccCCcccEEEE-----------EEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 369 VHLYRLQRGLTNAVIQDI-----------SFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 369 ~~l~~l~rG~~~a~I~~i-----------aFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
+..+.|+|.. .+.++ ..||||+.||.++.||.++.|.+--+
T Consensus 216 --~~~l~rsHs~-~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 216 --LRSLFRSHSQ-RVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred --HHHHHHhcCC-CcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee
Confidence 1133344322 22222 27999999999999999988877433
No 412
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=44.73 E-value=1e+02 Score=37.71 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=52.0
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec---cC------CcccEEEEEEcCC
Q 005349 322 SPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR---GL------TNAVIQDISFSDD 391 (701)
Q Consensus 322 ~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r---G~------~~a~I~~iaFSpD 391 (701)
.+...++|+| +-+.||..+..|+ .-|||+........ ..+.+.+ |. .......|.|.++
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~-Wsvw~i~~~~~~~~----------~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~ 214 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGN-WSVWDIKGRPKRKS----------SNLRLSRNISGSIIFDPEELSNWKRILWVSD 214 (765)
T ss_pred CccceEEeccCccceEEEEeccCc-EEEEEeccccccCC----------cceeeccCCCccccCCCcccCcceeeEecCC
Confidence 4788899999 6779999999998 89999932211000 0011111 11 0112457899999
Q ss_pred CCEEEEEeCCCcEEEEecCCCC
Q 005349 392 SNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 392 g~~lAsgS~dgTI~Iwdl~~~g 413 (701)
-+.|.+++ +..+.++|+++..
T Consensus 215 ~~~lLv~~-r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 215 SNRLLVCN-RSKLMLIDFESNW 235 (765)
T ss_pred CCEEEEEc-CCceEEEECCCCC
Confidence 88887765 5578899987643
No 413
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=44.26 E-value=2.6e+02 Score=26.73 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=45.0
Q ss_pred CcEEEEEECCCCcEEEEEecCCCEEEEEec------CCEEEEEeCCEEEEEECCCCceeEEEe
Q 005349 116 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS------SRVVAICQAAQVHCFDAATLEIEYAIL 172 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~tL~f~s~V~sV~~s------~~~LaVa~~~~I~iwDl~t~~~~~tl~ 172 (701)
++.+..||...+.-+..-+++..|.+|.+- ..++.|...-.|.-||..-.+..+++.
T Consensus 72 ~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 72 QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 377999999999877777778899999882 356666777899999988777666653
No 414
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.34 E-value=88 Score=36.22 Aligned_cols=92 Identities=22% Similarity=0.345 Sum_probs=56.5
Q ss_pred CCCeEEEEECCC--CcEEEEeecCC----CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 299 NVGMVIVRDIVS--KNVIAQFRAHK----SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 299 ~dG~V~IwDl~s--~~~i~~~~~H~----~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
.+..|.=||.+- ...+..-+.|. ...+|.+-.-+| ++|.||.+|. ||+||- .+ +.-.
T Consensus 402 s~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~Gd-IRLYdr-i~--------------~~AK 464 (644)
T KOG2395|consen 402 SDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGD-IRLYDR-IG--------------RRAK 464 (644)
T ss_pred cCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCc-EEeehh-hh--------------hhhh
Confidence 344555677542 22333333442 456666666666 5888999998 999995 33 2222
Q ss_pred EEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
+...|.- ..|.-|.-+.||+||...+ +..+.+-++
T Consensus 465 TAlPgLG-~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 465 TALPGLG-DAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred hcccccC-CceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 2223433 3488899999999997766 445655554
No 415
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=42.88 E-value=1.2e+02 Score=31.26 Aligned_cols=60 Identities=17% Similarity=0.406 Sum_probs=39.5
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCC
Q 005349 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 325 s~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d 401 (701)
..++-++.+.+|++++ |..|.+|++... ....+++|. |-..|..++++.-|.||++-=.+
T Consensus 21 ~~~c~~g~d~Lfva~~--g~~Vev~~l~~~------------~~~~~~~F~---Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 21 TAVCCGGPDALFVAAS--GCKVEVYDLEQE------------ECPLLCTFS---TVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceeeccCCceEEEEcC--CCEEEEEEcccC------------CCceeEEEc---chhheeEEEeccccceEEEEEee
Confidence 3344455445555433 456999999843 235666763 34569999999999999986443
No 416
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=42.80 E-value=59 Score=23.48 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=14.8
Q ss_pred EEec-CCEEEEEeCCEEEEEECCC
Q 005349 142 VRCS-SRVVAICQAAQVHCFDAAT 164 (701)
Q Consensus 142 V~~s-~~~LaVa~~~~I~iwDl~t 164 (701)
+... +++++.+.+++++++|++|
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEETT-
T ss_pred CEEECCEEEEEcCCCEEEEEeCCC
Confidence 3444 4555567889999999875
No 417
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=42.73 E-value=86 Score=33.81 Aligned_cols=71 Identities=24% Similarity=0.342 Sum_probs=49.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCccc----EEEEEEcCCCCEEEEEe
Q 005349 324 ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV----IQDISFSDDSNWIMISS 399 (701)
Q Consensus 324 Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~----I~~iaFSpDg~~lAsgS 399 (701)
|++|...++|.+|+|+-.-. .|.+.|-.++ .-++.| .|..... -...+|-+|-+++-.+.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~-~i~~I~~~tG--------------~I~W~l-gG~~~~df~~~~~~f~~QHdar~~~~~~ 209 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTS-TIYKIDPSTG--------------KIIWRL-GGKRNSDFTLPATNFSWQHDARFLNESN 209 (299)
T ss_pred eeeeeecCCccEEEEecccC-EEEEEECCCC--------------cEEEEe-CCCCCCcccccCCcEeeccCCEEeccCC
Confidence 56678889999998876654 4666676665 556666 2331111 12366778888998888
Q ss_pred CCCcEEEEecC
Q 005349 400 SRGTSHLFAIN 410 (701)
Q Consensus 400 ~dgTI~Iwdl~ 410 (701)
.+++|.|||=.
T Consensus 210 ~~~~IslFDN~ 220 (299)
T PF14269_consen 210 DDGTISLFDNA 220 (299)
T ss_pred CCCEEEEEcCC
Confidence 99999999973
No 418
>PRK10115 protease 2; Provisional
Probab=42.11 E-value=1.1e+02 Score=36.87 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=44.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-C---cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEE
Q 005349 322 SPISALCFDPSGILLVTASVQ-G---HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMI 397 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~d-G---t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAs 397 (701)
-.+..+.+||||++||-+-+. | ..|+|-|+.++ ..+-+ ...... ..++|++|++.|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg--------------~~l~~---~i~~~~-~~~~w~~D~~~~~y 188 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG--------------NWYPE---LLDNVE-PSFVWANDSWTFYY 188 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC--------------CCCCc---cccCcc-eEEEEeeCCCEEEE
Confidence 357778999999988876443 2 23667777655 11111 111112 45999999998887
Q ss_pred EeCCC------cEEEEecCCC
Q 005349 398 SSSRG------TSHLFAINPL 412 (701)
Q Consensus 398 gS~dg------TI~Iwdl~~~ 412 (701)
+..+. .|..+++.+.
T Consensus 189 ~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 189 VRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EEecCCCCCCCEEEEEECCCC
Confidence 76542 3555555544
No 419
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=41.21 E-value=7.6e+02 Score=30.28 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=60.9
Q ss_pred cccccCCCCeEEEEECCCC-----cEEEEeecCC----------CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCC
Q 005349 293 HFPDADNVGMVIVRDIVSK-----NVIAQFRAHK----------SPISALCFDPSGILLVTASVQGHNINIFKIIPGILG 357 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~-----~~i~~~~~H~----------~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~ 357 (701)
.++.-+..|.-.|||+... ..+.....+. +....+.|.++-..|+.++.. + +.++|+.+..
T Consensus 160 q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~-l~~~d~~~~~-- 235 (765)
T PF10214_consen 160 QFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-K-LMLIDFESNW-- 235 (765)
T ss_pred eEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-c-eEEEECCCCC--
Confidence 3444566788888888211 1111111111 344578999998888888775 3 8999998761
Q ss_pred CCCccCCCCceeEEEEEeccCCcccEEEEEEcCC--CCEEEEEeCCCcEEEEecCCCC
Q 005349 358 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD--SNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 358 ~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpD--g~~lAsgS~dgTI~Iwdl~~~g 413 (701)
...+ +-...+...|.++.=+++ +..|+..+ ..|..+++.+.+
T Consensus 236 ----------~~~~--l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~~~ 279 (765)
T PF10214_consen 236 ----------QTEY--LVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKSSS 279 (765)
T ss_pred ----------ccch--hccCCChhheeeEEecCCccceEEEEec--CeEEEEEccCCC
Confidence 0111 222223345999999987 55554443 467778887643
No 420
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=40.00 E-value=8e+02 Score=30.21 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=38.9
Q ss_pred cEEEEEECCCCcEEEEEecCCCEE---------EEE-------------------ecCCEEEEEeCCEEEEEECCCCcee
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIY---------SVR-------------------CSSRVVAICQAAQVHCFDAATLEIE 168 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~---------sV~-------------------~s~~~LaVa~~~~I~iwDl~t~~~~ 168 (701)
+.|.=.|.+||+.+-++.....+. .+. +.+++++.+.|++++..|+.|++..
T Consensus 204 ~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~ 283 (764)
T TIGR03074 204 NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLC 283 (764)
T ss_pred CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEE
Confidence 567777999999888876543221 111 2235566678999999999999987
Q ss_pred EEEe
Q 005349 169 YAIL 172 (701)
Q Consensus 169 ~tl~ 172 (701)
..+.
T Consensus 284 W~fg 287 (764)
T TIGR03074 284 EDFG 287 (764)
T ss_pred EEec
Confidence 7654
No 421
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.88 E-value=3.4e+02 Score=29.04 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=67.6
Q ss_pred cCCCCeEEEEECCCCcEEEEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~-~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~ 375 (701)
++..+.+.--|..+|+.+-.-. +-.-..+++- -|.+++-|...|. +.+-+.+++ .+.+.+.
T Consensus 29 gSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v---vgdfVV~GCy~g~-lYfl~~~tG--------------s~~w~f~ 90 (354)
T KOG4649|consen 29 GSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV---VGDFVVLGCYSGG-LYFLCVKTG--------------SQIWNFV 90 (354)
T ss_pred ecCCceEEEecCCCCcEEeehhhCceeeeeeEE---ECCEEEEEEccCc-EEEEEecch--------------hheeeee
Confidence 4455677777777776553321 1111122222 3677888888886 788888887 3444442
Q ss_pred ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCC
Q 005349 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 422 (701)
Q Consensus 376 rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~ 422 (701)
--. .-+++ -.-.+|+..+-.||.|++.+..|..++++....+.-.
T Consensus 91 ~~~-~vk~~-a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 91 ILE-TVKVR-AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred ehh-hhccc-eEEcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence 110 01122 3346799999999999999999999998888776543
No 422
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=39.22 E-value=2.4e+02 Score=30.48 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=35.2
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE--EeccCCcccEEEEEEcCCCCEE
Q 005349 318 RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR--LQRGLTNAVIQDISFSDDSNWI 395 (701)
Q Consensus 318 ~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~--l~rG~~~a~I~~iaFSpDg~~l 395 (701)
+.-...|.+|.|+||+.+.+.+ ..|. |+.=+.... .....+ .........|.+++|.+++...
T Consensus 183 r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~-------------~~~w~~~~~~~~~~~~~~ld~a~~~~~~~w 247 (302)
T PF14870_consen 183 RNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDD-------------GETWSEPIIPIKTNGYGILDLAYRPPNEIW 247 (302)
T ss_dssp --SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTE-------------EEEE---B-TTSS--S-EEEEEESSSS-EE
T ss_pred cCccceehhceecCCCCEEEEe-CCcE-EEEccCCCC-------------ccccccccCCcccCceeeEEEEecCCCCEE
Confidence 3445799999999999987766 5554 554441111 011000 0000111238999999998888
Q ss_pred EEEeCC
Q 005349 396 MISSSR 401 (701)
Q Consensus 396 AsgS~d 401 (701)
|+|+..
T Consensus 248 a~gg~G 253 (302)
T PF14870_consen 248 AVGGSG 253 (302)
T ss_dssp EEESTT
T ss_pred EEeCCc
Confidence 877654
No 423
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=37.96 E-value=1.3e+02 Score=34.60 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=15.1
Q ss_pred eEEEEEcCCCCEEEEEeCCC
Q 005349 324 ISALCFDPSGILLVTASVQG 343 (701)
Q Consensus 324 Is~laFSPdG~lLaTaS~dG 343 (701)
-..|+|.|||+++++.++.|
T Consensus 148 GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 148 GGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CceEEECCCCcEEEEECCCC
Confidence 35688999999888766553
No 424
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=37.26 E-value=9.5e+02 Score=30.29 Aligned_cols=95 Identities=12% Similarity=0.135 Sum_probs=64.8
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCc
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~ 380 (701)
..|+||++.+++.++.=..|..++.+|...-.|..+|.|+--+. |.+-..+.. ...++.+-|-..+
T Consensus 848 ~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~-------------eg~f~evArD~~p 913 (1096)
T KOG1897|consen 848 QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGD-------------EGNFEEVARDYNP 913 (1096)
T ss_pred cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEecc-------------CCceEEeehhhCc
Confidence 46999999998777776788899999999999999999998765 666544332 0124455455444
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 381 AVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 381 a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
..+..+.+=.|..+ +.+..+|.+.+-..+
T Consensus 914 ~Wmtaveil~~d~y-lgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 914 NWMTAVEILDDDTY-LGAENSGNLFTVRKD 942 (1096)
T ss_pred cceeeEEEecCceE-EeecccccEEEEEec
Confidence 44666666544444 455566776665554
No 425
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=36.89 E-value=1.8e+02 Score=30.35 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=44.7
Q ss_pred CeEEEEEcCCCCEEEEEe--CCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC
Q 005349 323 PISALCFDPSGILLVTAS--VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTaS--~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
.+.+.+.|+||+.+|... .++..+.++..... ... +..|. .+..-+|++++...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-------------~~~---~~~g~---~l~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-------------VRP---VLTGG---SLTRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-------------cee---eccCC---ccccccccCCCCEEEEEcC
Confidence 688899999999988877 66665665544322 111 11222 3777899999777766666
Q ss_pred CCcEEEEe
Q 005349 401 RGTSHLFA 408 (701)
Q Consensus 401 dgTI~Iwd 408 (701)
+...+++.
T Consensus 86 ~~~~~~~~ 93 (253)
T PF10647_consen 86 SGGVRVVR 93 (253)
T ss_pred CCceEEEE
Confidence 66667764
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.83 E-value=4.7e+02 Score=31.84 Aligned_cols=47 Identities=9% Similarity=0.294 Sum_probs=38.2
Q ss_pred cEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEEEeCCEEEEEECCC
Q 005349 117 TVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAICQAAQVHCFDAAT 164 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaVa~~~~I~iwDl~t 164 (701)
-.|+||++ +|+.+.++.. +..+..+.|+ ..+++|.-+++++||++.-
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecch
Confidence 46999997 7887777765 5588889997 4788889999999999874
No 427
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=36.32 E-value=1.9e+02 Score=25.49 Aligned_cols=16 Identities=13% Similarity=0.530 Sum_probs=12.4
Q ss_pred EEEEEEcCCCCEEEEE
Q 005349 383 IQDISFSDDSNWIMIS 398 (701)
Q Consensus 383 I~~iaFSpDg~~lAsg 398 (701)
-+.|++|+|+.+|..+
T Consensus 59 pNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 59 PNGVALSPDESFVLVA 74 (89)
T ss_dssp EEEEEE-TTSSEEEEE
T ss_pred cCeEEEcCCCCEEEEE
Confidence 5789999999987665
No 428
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=35.67 E-value=74 Score=21.80 Aligned_cols=25 Identities=28% Similarity=0.671 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005349 382 VIQDISFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 382 ~I~~iaFSpDg~~lAsgS~dgTI~Iwd 408 (701)
.|.+|+-++ +|+|.+++.+-++||.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 377888776 4999999999999983
No 429
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=35.52 E-value=73 Score=22.93 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=21.9
Q ss_pred EEEEEeCCEEEEEECCCCceeEEEecC
Q 005349 148 VVAICQAAQVHCFDAATLEIEYAILTN 174 (701)
Q Consensus 148 ~LaVa~~~~I~iwDl~t~~~~~tl~t~ 174 (701)
+++...++.|+.+|+.|++.+......
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 344467889999999999999888764
No 430
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=33.55 E-value=2e+02 Score=31.73 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=16.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeC
Q 005349 321 KSPISALCFDPSGILLVTASV 341 (701)
Q Consensus 321 ~~~Is~laFSPdG~lLaTaS~ 341 (701)
.+....++|.|||++.++-+.
T Consensus 123 ~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 123 HHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred cccccCceECCCCCEEEeccc
Confidence 356788999999998887653
No 431
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=33.48 E-value=2.8e+02 Score=34.18 Aligned_cols=36 Identities=14% Similarity=0.009 Sum_probs=26.8
Q ss_pred EEEEecCCEEEEEeCCEEEEEECCCCceeEEEecCC
Q 005349 140 YSVRCSSRVVAICQAAQVHCFDAATLEIEYAILTNP 175 (701)
Q Consensus 140 ~sV~~s~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~ 175 (701)
...+++-.++.+-..+-|.|++++|++.++++.++.
T Consensus 1102 q~FalsypYIlaf~~~fIeIr~ieTgeLI~~ilg~~ 1137 (1175)
T COG5422 1102 QEFALSYPYILAFEPNFIEIRHIETGELIRCILGHN 1137 (1175)
T ss_pred ceeeeecceEEEecCceEEEEecccceeeeeeccCc
Confidence 334555555555556789999999999999998763
No 432
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=33.40 E-value=67 Score=28.12 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=23.7
Q ss_pred EEEEEEcCCCCEEEEEeC-CCcEEEEecCC
Q 005349 383 IQDISFSDDSNWIMISSS-RGTSHLFAINP 411 (701)
Q Consensus 383 I~~iaFSpDg~~lAsgS~-dgTI~Iwdl~~ 411 (701)
-..|+++||+++|..++. +++||+|..++
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 368999999999887665 68999998764
No 433
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=33.10 E-value=2.6e+02 Score=31.54 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=23.5
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 381 AVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 381 a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
..|.++.|+.+. .|+.-..||++++|++.
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 469999999865 45566789999999984
No 434
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=32.49 E-value=84 Score=35.71 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=32.1
Q ss_pred CcEEEEEECCCCcEEEEEecCC---CEEEEEec--C----CEEEEEeCCEEEEEE
Q 005349 116 PTVVHFYSLRSQSYVHMLKFRS---PIYSVRCS--S----RVVAICQAAQVHCFD 161 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~tL~f~s---~V~sV~~s--~----~~LaVa~~~~I~iwD 161 (701)
-+++.|||+++++.+++|.+.. -+..|+|- + -++.+++..+|..|=
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~ 275 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFY 275 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEE
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEE
Confidence 4789999999999999999953 46788883 2 356667777877763
No 435
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.38 E-value=94 Score=35.41 Aligned_cols=86 Identities=15% Similarity=0.251 Sum_probs=56.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC
Q 005349 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 321 ~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
.++|.+++||+|.+.||.--.+.+ |..+...+.. +.....++.+-+ ++.|...+|+.. +-+|.-+.
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~-v~f~nf~~d~----------~~l~~~~~ck~k--~~~IlGF~W~~s-~e~A~i~~ 131 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKT-VDFCNFIPDN----------SQLEYTQECKTK--NANILGFCWTSS-TEIAFITD 131 (657)
T ss_pred CCceeEEEeccCcceEEEEecCce-EEEEecCCCc----------hhhHHHHHhccC--cceeEEEEEecC-eeEEEEec
Confidence 468999999999999999988866 8888875431 011111222222 344999999865 77777776
Q ss_pred CCcEEEEecCCCCCcee-ecCC
Q 005349 401 RGTSHLFAINPLGGSVN-FQPT 421 (701)
Q Consensus 401 dgTI~Iwdl~~~g~~~~-~~~H 421 (701)
.| +-+|.+.+...... ++.|
T Consensus 132 ~G-~e~y~v~pekrslRlVks~ 152 (657)
T KOG2377|consen 132 QG-IEFYQVLPEKRSLRLVKSH 152 (657)
T ss_pred CC-eEEEEEchhhhhhhhhhhc
Confidence 54 67888876655443 2454
No 436
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=32.30 E-value=1e+02 Score=20.80 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=18.8
Q ss_pred CEEEEEeCCEEEEEECCCCceeEE
Q 005349 147 RVVAICQAAQVHCFDAATLEIEYA 170 (701)
Q Consensus 147 ~~LaVa~~~~I~iwDl~t~~~~~t 170 (701)
.+++...++.++.+|+.+++.+.+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 445556789999999999987655
No 437
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=31.20 E-value=1.1e+02 Score=24.42 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=25.0
Q ss_pred EEEEEEcCCCCEEEEEeC-----CCcEEEEecCCCCC
Q 005349 383 IQDISFSDDSNWIMISSS-----RGTSHLFAINPLGG 414 (701)
Q Consensus 383 I~~iaFSpDg~~lAsgS~-----dgTI~Iwdl~~~g~ 414 (701)
+++++.-|||++|++|.. +....|+.+++-|.
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGs 39 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGS 39 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCC
Confidence 678999999999999964 44567888877654
No 438
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=30.65 E-value=93 Score=36.16 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=23.4
Q ss_pred CeEEEEEcC----CCCEEEEEeCCCcEEEEEEcCCC
Q 005349 323 PISALCFDP----SGILLVTASVQGHNINIFKIIPG 354 (701)
Q Consensus 323 ~Is~laFSP----dG~lLaTaS~dGt~I~Iwdl~~~ 354 (701)
.+.++++++ +.++|+|-+.|++ +||||+.++
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~ 250 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETG 250 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSE-EEEEETTTT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCC
Confidence 445556666 6789999999987 999999987
No 439
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=30.16 E-value=1.5e+02 Score=31.13 Aligned_cols=89 Identities=20% Similarity=0.208 Sum_probs=49.4
Q ss_pred eEEEEECCCCcEEEEee-cCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 302 MVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQG--HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~-~H~~~Is~laFSPdG~lLaTaS~dG--t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
.-.+||+.+++.. .+. ....-++.=+|-|||++|.+|+..+ +.||+|+-... ....++..... .|..+.
T Consensus 47 ~s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~----~~~~~w~e~~~---~m~~~R 118 (243)
T PF07250_consen 47 HSVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTS----DGTCDWTESPN---DMQSGR 118 (243)
T ss_pred EEEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCC----CCCCCceECcc---cccCCC
Confidence 3567999987653 333 2333455567899999999987632 34888875431 00111110000 111111
Q ss_pred CcccEEEEEEcCCCCEEEEEeCC
Q 005349 379 TNAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~d 401 (701)
. --...-=|||+.|+.|+.+
T Consensus 119 W---YpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 119 W---YPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred c---cccceECCCCCEEEEeCcC
Confidence 1 1223344799999998887
No 440
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=29.57 E-value=6.2e+02 Score=27.10 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=38.8
Q ss_pred CCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEe-----CCCcEEEEEEcCCC
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS-----VQGHNINIFKIIPG 354 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS-----~dGt~I~Iwdl~~~ 354 (701)
.-.|.+||..+.+=..--.+=.+.|++|.|..+.++|+.|+ .....+..||....
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 45799999887653332223457899999998888888886 23345788887754
No 441
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=29.26 E-value=7.2e+02 Score=26.46 Aligned_cols=54 Identities=15% Similarity=0.306 Sum_probs=38.4
Q ss_pred CeEEEEECCCCcEEEEeec--C----CCCeEEEEEcCC-C----CEEEEEeCCCcEEEEEEcCCC
Q 005349 301 GMVIVRDIVSKNVIAQFRA--H----KSPISALCFDPS-G----ILLVTASVQGHNINIFKIIPG 354 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~--H----~~~Is~laFSPd-G----~lLaTaS~dGt~I~Iwdl~~~ 354 (701)
-++.+||+.+++.++++.- + .+-+..+.++.. + .+.--++..+.-|-|+|+.++
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~ 98 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATG 98 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTT
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCC
Confidence 4789999999998887762 1 357888999883 2 344444554456899999886
No 442
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=29.12 E-value=3.2e+02 Score=29.66 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=44.2
Q ss_pred EEEEeecCCCCeEEEEEcCC-------CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEE
Q 005349 313 VIAQFRAHKSPISALCFDPS-------GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQD 385 (701)
Q Consensus 313 ~i~~~~~H~~~Is~laFSPd-------G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~ 385 (701)
++..+.+|. .++.+.|-.. |.+|++. ..+..|.-.++.+. .......++. +....++.+
T Consensus 245 P~~~~~~~~-ap~G~~~y~g~~fp~~~g~~~~~~-~~~~~i~~~~~~~~-----------~~~~~~~~~~-~~~~~r~~~ 310 (331)
T PF07995_consen 245 PVFAYPPHS-APTGIIFYRGSAFPEYRGDLFVAD-YGGGRIWRLDLDED-----------GSVTEEEEFL-GGFGGRPRD 310 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEE-TTTTEEEEEEEETT-----------EEEEEEEEEC-TTSSS-EEE
T ss_pred cceeecCcc-ccCceEEECCccCccccCcEEEec-CCCCEEEEEeeecC-----------CCccceEEcc-ccCCCCceE
Confidence 556677774 5666777754 4455544 44443555555433 0112223332 223336999
Q ss_pred EEEcCCCCEEEEEeCCCcEE
Q 005349 386 ISFSDDSNWIMISSSRGTSH 405 (701)
Q Consensus 386 iaFSpDg~~lAsgS~dgTI~ 405 (701)
|++.|||.+.++...+|+|.
T Consensus 311 v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 311 VAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEETTSEEEEEE-TTTTEE
T ss_pred EEEcCCCeEEEEECCCCeEe
Confidence 99999999999888888763
No 443
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=27.95 E-value=1.2e+03 Score=28.67 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=37.7
Q ss_pred CCCeEEEEECCCCcEEEEeec-CC---------CCeEEEEEcC-CCC---EEEEEeCCCcEEEEEEcCCC
Q 005349 299 NVGMVIVRDIVSKNVIAQFRA-HK---------SPISALCFDP-SGI---LLVTASVQGHNINIFKIIPG 354 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~-H~---------~~Is~laFSP-dG~---lLaTaS~dGt~I~Iwdl~~~ 354 (701)
..+.|.-.|..+++..-+++. |. .++ -+.+.- +|+ .++.++++|. +.++|-.++
T Consensus 412 y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~-L~d~~~~~G~~~~~v~~~~K~G~-~~vlDr~tG 479 (764)
T TIGR03074 412 YSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPS-LVDLPDADGTTVPALVAPTKQGQ-IYVLDRRTG 479 (764)
T ss_pred ccceEEEEeCCCCceEEEecccCCccccccccCCce-EEeeecCCCcEeeEEEEECCCCE-EEEEECCCC
Confidence 346788889999999888874 21 122 223333 674 7888888886 888888877
No 444
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=26.80 E-value=1.8e+02 Score=32.74 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=16.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCC
Q 005349 322 SPISALCFDPSGILLVTASVQ 342 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~d 342 (701)
+.=..|.|+|||+|++|.+..
T Consensus 177 H~g~~l~f~pDG~Lyvs~G~~ 197 (399)
T COG2133 177 HFGGRLVFGPDGKLYVTTGSN 197 (399)
T ss_pred cCcccEEECCCCcEEEEeCCC
Confidence 344679999999999987765
No 445
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=26.64 E-value=3.8e+02 Score=29.44 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCEEEEEe-----------CCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCC
Q 005349 323 PISALCFDPSGILLVTAS-----------VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 391 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTaS-----------~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpD 391 (701)
....|+|+++|+++++-. ..+..|.+++-..+ .| .......+-.+.. ....|+|.++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dg-dG---------~~d~~~vfa~~l~--~p~Gi~~~~~ 82 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADG-DG---------KYDKSNVFAEELS--MVTGLAVAVG 82 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCC-CC---------CcceeEEeecCCC--CccceeEecC
Confidence 346789999999888753 22323666654332 11 1111222222322 2578999999
Q ss_pred CCEEEE
Q 005349 392 SNWIMI 397 (701)
Q Consensus 392 g~~lAs 397 (701)
| .+++
T Consensus 83 G-lyV~ 87 (367)
T TIGR02604 83 G-VYVA 87 (367)
T ss_pred C-EEEe
Confidence 9 4443
No 446
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=26.52 E-value=1.6e+02 Score=25.95 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=29.7
Q ss_pred ccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCC
Q 005349 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ 342 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~d 342 (701)
.+...|.+.-||..+++....+.+ -.--+.|++++|+..|+.+-.-
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGG
T ss_pred cCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEecc
Confidence 456679999999999875333332 2245789999999977766543
No 447
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.40 E-value=2.5e+02 Score=30.31 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=44.1
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC-----
Q 005349 327 LCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS----- 400 (701)
Q Consensus 327 laFSPd-G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~----- 400 (701)
|+|+|. ..-++-|-.-|+-..+||......-... .....+|. -|| =+|||||+||.+.-.
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~---~s~~~RHf----yGH-------Gvfs~dG~~LYATEndfd~~ 138 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL---VSQEGRHF----YGH-------GVFSPDGRLLYATENDFDPN 138 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEE---ecccCcee----ecc-------cccCCCCcEEEeecCCCCCC
Confidence 889995 6678889899998899998765100000 00001111 122 359999999987654
Q ss_pred CCcEEEEecC
Q 005349 401 RGTSHLFAIN 410 (701)
Q Consensus 401 dgTI~Iwdl~ 410 (701)
+|.|=|||..
T Consensus 139 rGViGvYd~r 148 (366)
T COG3490 139 RGVIGVYDAR 148 (366)
T ss_pred CceEEEEecc
Confidence 4667788775
No 448
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=26.28 E-value=1.2e+02 Score=20.33 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEE
Q 005349 383 IQDISFSDDSNWIMISSSRGTSHLF 407 (701)
Q Consensus 383 I~~iaFSpDg~~lAsgS~dgTI~Iw 407 (701)
-.+|+.+++|+.+++=+....|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4678899999888888878778775
No 449
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=25.54 E-value=77 Score=32.88 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=41.5
Q ss_pred cCCCCeEEEEECCCCcEEEEeecCC-CCeEEEEEcCCCCEEEEE--eCCCcEEEEEEcCC
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFRAHK-SPISALCFDPSGILLVTA--SVQGHNINIFKIIP 353 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~~H~-~~Is~laFSPdG~lLaTa--S~dGt~I~Iwdl~~ 353 (701)
+..+|.|+.|.+.-.+.+...-.|+ .++..+..+-.++.|+.+ |.+.. ++.|++..
T Consensus 120 ~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~-~k~W~ve~ 178 (238)
T KOG2444|consen 120 GAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRV-LKKWNVEK 178 (238)
T ss_pred eccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchh-hhhcchhh
Confidence 4578999999999888888777887 666666666677777776 66643 67777654
No 450
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=25.48 E-value=7.2e+02 Score=26.59 Aligned_cols=38 Identities=24% Similarity=0.483 Sum_probs=29.1
Q ss_pred cEEEEeccCCeEEEEecCC-CCeeEEeeeccCCEEEEEEee
Q 005349 19 RVLLLGYRSGFQVWDVEEA-DNVHDLVSRYDGPVSFMQMLP 58 (701)
Q Consensus 19 ~vL~~g~~~g~qVwdv~~~-~~~~elvs~~dG~V~~l~~lp 58 (701)
+.|++|.+.|+-+.|+... +....++++ .+|..+++++
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~~~~kl~~~--~~v~q~~v~~ 52 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPGTLEKLIGR--RSVTQIWVLE 52 (302)
T ss_pred cEEEEEeCCceEEEEcccCCCCeEEecCc--CceEEEEEEh
Confidence 5699999999999998753 356666663 4888998885
No 451
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.68 E-value=2.4e+02 Score=29.68 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=33.6
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC
Q 005349 327 LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 390 (701)
Q Consensus 327 laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp 390 (701)
++.+-+|.+.+++=..|+ |.-+|..++ +.|.++.-- ..+|+|+||--
T Consensus 217 m~ID~eG~L~Va~~ng~~-V~~~dp~tG--------------K~L~eiklP--t~qitsccFgG 263 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGT-VQKVDPTTG--------------KILLEIKLP--TPQITSCCFGG 263 (310)
T ss_pred ceEccCCcEEEEEecCcE-EEEECCCCC--------------cEEEEEEcC--CCceEEEEecC
Confidence 666888998888776666 667787777 666666432 33599999953
No 452
>PRK10115 protease 2; Provisional
Probab=23.49 E-value=7e+02 Score=30.16 Aligned_cols=98 Identities=6% Similarity=0.043 Sum_probs=54.2
Q ss_pred CCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCC-C----cEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-G----HNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~d-G----t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
+..-.|+|.|+.++..+...-.... ..++|++||+.|+-...+ + ..+..+++.++. ..-.+++
T Consensus 150 ~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~----------~~d~lv~ 217 (686)
T PRK10115 150 RRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA----------SQDELVY 217 (686)
T ss_pred cEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh----------hHCeEEE
Confidence 3445799999998864322212222 459999999866655443 2 235555555431 1124444
Q ss_pred EEeccCCcccEEEEEEcCCCCEEEEEeCCC---cEEEEecC
Q 005349 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRG---TSHLFAIN 410 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSpDg~~lAsgS~dg---TI~Iwdl~ 410 (701)
+- ........+..+.|++++...+..+ .+.+++..
T Consensus 218 ~e---~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 218 EE---KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ee---CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 42 1111122444566999877665544 58888853
No 453
>PRK13684 Ycf48-like protein; Provisional
Probab=23.40 E-value=3.9e+02 Score=29.06 Aligned_cols=67 Identities=22% Similarity=0.390 Sum_probs=40.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC
Q 005349 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 321 ~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
...+.++.+.|+|.+++++. .|..++.+| .+ . ..-..+.++ ....++++++.++++.++++ .
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~--~g---g----------~tW~~~~~~-~~~~l~~i~~~~~g~~~~vg-~ 233 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE--PG---Q----------TAWTPHQRN-SSRRLQSMGFQPDGNLWMLA-R 233 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC--CC---C----------CeEEEeeCC-CcccceeeeEcCCCCEEEEe-c
Confidence 35788999999998887765 465333222 11 0 111112222 33459999999999987775 4
Q ss_pred CCcEE
Q 005349 401 RGTSH 405 (701)
Q Consensus 401 dgTI~ 405 (701)
.|.+.
T Consensus 234 ~G~~~ 238 (334)
T PRK13684 234 GGQIR 238 (334)
T ss_pred CCEEE
Confidence 56653
No 454
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=23.07 E-value=9.3e+02 Score=25.63 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=37.3
Q ss_pred cEEEEEECCCCcEEEEEecCCC-------EEEEEecC--C----EEE-EE--eCCEEEEEECCCCceeEEEec
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSP-------IYSVRCSS--R----VVA-IC--QAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~-------V~sV~~s~--~----~La-Va--~~~~I~iwDl~t~~~~~tl~t 173 (701)
-+|-.|||+|++.++++.|+.. ..++++.. . -.| ++ ...-|.|||+.+++.-+-+..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 5688889999999999998643 44565532 1 233 33 345899999999876555543
No 455
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=22.92 E-value=6.9 Score=25.71 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=10.5
Q ss_pred cEEEEccCccEEE
Q 005349 522 HLLVFSPSGCMIQ 534 (701)
Q Consensus 522 ~l~v~~p~g~~~~ 534 (701)
++-+|+|+|+|.|
T Consensus 4 ~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 4 SITTFSPDGRLFQ 16 (23)
T ss_dssp STTSBBTTSSBHH
T ss_pred CceeECCCCeEEe
Confidence 3457999999988
No 456
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=22.53 E-value=6.6e+02 Score=28.31 Aligned_cols=74 Identities=11% Similarity=0.038 Sum_probs=43.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC
Q 005349 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 321 ~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
...++++.|.++|.+++.+ ..|.+ +|....+..+ ....++++.+......+.++.|.+|+..+++| .
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l--~~S~d~G~~~---------~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~ 346 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGL--YVSKGTGLTE---------EDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-G 346 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceE--EEecCCCCcc---------cccceeecccCCCCcceEEEEEcCCCcEEEEE-C
Confidence 3578999999999988766 55652 3443333100 00023333332222348999999998877665 5
Q ss_pred CCcEEEE
Q 005349 401 RGTSHLF 407 (701)
Q Consensus 401 dgTI~Iw 407 (701)
+|.+.+.
T Consensus 347 ~G~v~~s 353 (398)
T PLN00033 347 SGILLRS 353 (398)
T ss_pred CCcEEEe
Confidence 6655443
No 457
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=21.99 E-value=8.9e+02 Score=27.85 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCC
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIP 353 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~ 353 (701)
..-..|+|.|||++|+|--..|+ |++++...
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~-I~~v~~~~ 60 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGK-ILRVNPET 60 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCE-EEEEeCCC
Confidence 34577999999999988655687 67776443
No 458
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.75 E-value=86 Score=39.40 Aligned_cols=92 Identities=8% Similarity=-0.021 Sum_probs=58.5
Q ss_pred CCeEEEEECCCCcE-----EEEeecCC------CCeEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCc
Q 005349 300 VGMVIVRDIVSKNV-----IAQFRAHK------SPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 367 (701)
Q Consensus 300 dG~V~IwDl~s~~~-----i~~~~~H~------~~Is~laFSPdG-~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~ 367 (701)
+-.|..||+++... -.-|+-|. .-..++.|+|.= -..|.+..|+. |+|+.+....
T Consensus 123 g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls-l~V~~~~~~~------------ 189 (1405)
T KOG3630|consen 123 GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS-LRVKSTKQLA------------ 189 (1405)
T ss_pred CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc-hhhhhhhhhh------------
Confidence 45688899886321 12223332 234667888853 34556667775 8888775430
Q ss_pred eeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005349 368 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 368 ~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwd 408 (701)
..... +.-....++++|||-|+.+++|-..||+.-|-
T Consensus 190 -~~v~s---~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~ 226 (1405)
T KOG3630|consen 190 -QNVTS---FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYE 226 (1405)
T ss_pred -hhhcc---cCcccceeeEEeccccceeeEecCCCeEEEee
Confidence 11111 22234589999999999999999999998764
No 459
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.70 E-value=4.4e+02 Score=28.63 Aligned_cols=85 Identities=12% Similarity=0.253 Sum_probs=56.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEE
Q 005349 319 AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (701)
Q Consensus 319 ~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsg 398 (701)
+-+..|++|.|+|+.+.|.+....... -|+=...| ......-| .|.. .-..|.+.-+|+++++-
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~-iVElt~~G------------dlirtiPL-~g~~--DpE~Ieyig~n~fvi~d 146 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAA-IVELTKEG------------DLIRTIPL-TGFS--DPETIEYIGGNQFVIVD 146 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCce-EEEEecCC------------ceEEEecc-cccC--ChhHeEEecCCEEEEEe
Confidence 444569999999998877776666653 34433443 11222222 2332 34578899999999988
Q ss_pred eCCCcEEEEecCCCCCceeec
Q 005349 399 SSRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 399 S~dgTI~Iwdl~~~g~~~~~~ 419 (701)
=.++++.++.+.+.+....+.
T Consensus 147 ER~~~l~~~~vd~~t~~~~~~ 167 (316)
T COG3204 147 ERDRALYLFTVDADTTVISAK 167 (316)
T ss_pred hhcceEEEEEEcCCccEEecc
Confidence 889999999998876655443
No 460
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=20.89 E-value=1.2e+02 Score=25.11 Aligned_cols=28 Identities=11% Similarity=0.302 Sum_probs=23.0
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 391 DSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 391 Dg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
..+.+|.-+.+++||||..++....+++
T Consensus 28 ~~N~Fav~~e~~~iKIfkyd~~tNei~L 55 (63)
T PF14157_consen 28 EHNHFAVVDEDGQIKIFKYDEDTNEITL 55 (63)
T ss_dssp STTEEEEE-ETTEEEEEEEETTTTEEEE
T ss_pred cCCEEEEEecCCeEEEEEeCCCCCeEEE
Confidence 4567888889999999999998888876
No 461
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.20 E-value=2.3e+02 Score=29.75 Aligned_cols=39 Identities=10% Similarity=0.035 Sum_probs=30.6
Q ss_pred CCCcEEEEEECCCCcEEEEEecCC-CEEEEEecC---CEEEEE
Q 005349 114 SVPTVVHFYSLRSQSYVHMLKFRS-PIYSVRCSS---RVVAIC 152 (701)
Q Consensus 114 ~~~~tVriWdl~tg~~v~tL~f~s-~V~sV~~s~---~~LaVa 152 (701)
|.-++|.-.|+.||+.+.+++++. +|.+.+|-+ .++.|.
T Consensus 230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 345788889999999999999975 788999964 355553
Done!