Query 005349
Match_columns 701
No_of_seqs 402 out of 2484
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 22:50:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vu4_A KMHSV2; beta-propeller 100.0 1.3E-26 4.4E-31 248.7 31.9 226 17-412 30-272 (355)
2 4gqb_B Methylosome protein 50; 99.9 4.5E-25 1.5E-29 236.9 31.6 229 18-412 94-332 (344)
3 3ow8_A WD repeat-containing pr 99.9 8.7E-25 3E-29 231.5 32.8 238 19-424 50-292 (321)
4 1got_B GT-beta; complex (GTP-b 99.9 2.1E-23 7.1E-28 221.6 35.6 240 18-424 68-314 (340)
5 1vyh_C Platelet-activating fac 99.9 8.4E-24 2.9E-28 231.2 32.8 237 19-424 122-382 (410)
6 3ow8_A WD repeat-containing pr 99.9 2.1E-23 7.3E-28 220.7 33.7 223 18-409 93-319 (321)
7 4h5i_A Guanine nucleotide-exch 99.9 1.6E-23 5.5E-28 225.9 32.3 227 26-411 103-343 (365)
8 2ynn_A Coatomer subunit beta'; 99.9 3.5E-23 1.2E-27 216.4 33.9 237 18-422 26-270 (304)
9 4g56_B MGC81050 protein; prote 99.9 6.4E-24 2.2E-28 228.1 26.7 234 18-417 106-349 (357)
10 1vyh_C Platelet-activating fac 99.9 2.8E-23 9.6E-28 227.0 30.6 243 18-409 163-409 (410)
11 3frx_A Guanine nucleotide-bind 99.9 2.9E-22 1E-26 211.1 34.7 247 18-411 31-317 (319)
12 4gqb_B Methylosome protein 50; 99.9 5.8E-23 2E-27 220.5 28.4 240 17-425 41-302 (344)
13 2ynn_A Coatomer subunit beta'; 99.9 1.9E-22 6.4E-27 210.9 31.1 219 39-424 4-230 (304)
14 2pbi_B Guanine nucleotide-bind 99.9 5.7E-22 2E-26 212.4 34.9 243 18-425 77-329 (354)
15 1got_B GT-beta; complex (GTP-b 99.9 3.9E-22 1.3E-26 211.8 32.9 222 18-408 110-340 (340)
16 1erj_A Transcriptional repress 99.9 5.7E-22 2E-26 215.0 34.3 251 17-424 75-354 (393)
17 4gga_A P55CDC, cell division c 99.9 1.1E-21 3.9E-26 214.0 36.1 274 18-415 116-399 (420)
18 1nr0_A Actin interacting prote 99.9 3.6E-22 1.2E-26 229.7 32.9 114 293-421 462-579 (611)
19 2pm7_B Protein transport prote 99.9 6.9E-22 2.4E-26 205.9 30.4 247 18-413 22-287 (297)
20 1erj_A Transcriptional repress 99.9 1.5E-21 5.2E-26 211.6 32.4 233 18-412 136-390 (393)
21 3iz6_a 40S ribosomal protein R 99.9 1.2E-21 4E-26 211.6 30.8 260 18-412 79-376 (380)
22 1nr0_A Actin interacting prote 99.9 9.8E-22 3.3E-26 226.0 31.2 236 16-420 28-279 (611)
23 4ery_A WD repeat-containing pr 99.9 5.2E-21 1.8E-25 199.0 33.9 239 18-424 36-281 (312)
24 2pbi_B Guanine nucleotide-bind 99.9 3.5E-21 1.2E-25 206.3 33.1 223 18-408 119-354 (354)
25 3k26_A Polycomb protein EED; W 99.9 3.4E-21 1.2E-25 201.9 31.2 297 18-410 35-365 (366)
26 4ggc_A P55CDC, cell division c 99.9 3.6E-20 1.2E-24 190.9 36.9 270 18-411 36-315 (318)
27 4ery_A WD repeat-containing pr 99.9 1.8E-20 6E-25 195.0 32.9 216 40-422 15-234 (312)
28 2ymu_A WD-40 repeat protein; u 99.9 9.2E-21 3.2E-25 213.2 33.1 217 18-408 356-577 (577)
29 3fm0_A Protein CIAO1; WDR39,SG 99.9 1.5E-20 5.1E-25 200.3 32.5 242 18-412 29-284 (345)
30 2xzm_R RACK1; ribosome, transl 99.9 3.7E-20 1.3E-24 196.5 35.1 239 18-414 40-288 (343)
31 3iz6_a 40S ribosomal protein R 99.9 1.8E-21 6.1E-26 210.1 25.0 267 29-418 48-336 (380)
32 2ymu_A WD-40 repeat protein; u 99.9 2.1E-20 7.2E-25 210.2 34.6 272 18-425 275-552 (577)
33 3zwl_B Eukaryotic translation 99.9 8.8E-20 3E-24 190.9 35.3 249 18-423 44-316 (369)
34 4aez_A CDC20, WD repeat-contai 99.9 5E-20 1.7E-24 199.5 34.4 270 18-415 104-384 (401)
35 3bg1_A Protein SEC13 homolog; 99.9 7E-21 2.4E-25 200.3 25.4 254 18-413 26-295 (316)
36 3jrp_A Fusion protein of prote 99.9 2.1E-20 7.1E-25 196.8 29.0 248 18-413 23-289 (379)
37 1gxr_A ESG1, transducin-like e 99.9 1.3E-19 4.4E-24 187.6 34.0 262 17-409 62-335 (337)
38 3vl1_A 26S proteasome regulato 99.9 2.6E-20 9E-25 200.6 29.8 252 18-413 110-367 (420)
39 1r5m_A SIR4-interacting protei 99.9 1.6E-20 5.4E-25 200.5 27.8 276 18-410 120-424 (425)
40 3mmy_A MRNA export factor; mRN 99.9 1.7E-20 5.7E-25 196.3 26.9 269 19-412 55-347 (368)
41 4aow_A Guanine nucleotide-bind 99.9 1.9E-19 6.5E-24 187.3 34.6 244 18-412 51-338 (340)
42 1sq9_A Antiviral protein SKI8; 99.9 2.6E-20 8.9E-25 198.8 28.5 109 295-419 201-330 (397)
43 3f3f_A Nucleoporin SEH1; struc 99.9 3.6E-20 1.2E-24 190.9 28.5 265 18-418 23-344 (351)
44 2hes_X YDR267CP; beta-propelle 99.9 4.2E-20 1.4E-24 195.5 28.6 230 19-411 72-328 (330)
45 4a11_B DNA excision repair pro 99.9 9.4E-20 3.2E-24 193.8 31.2 247 18-416 56-370 (408)
46 3v7d_B Cell division control p 99.9 1.4E-19 4.7E-24 198.5 33.3 245 18-413 133-383 (464)
47 3vl1_A 26S proteasome regulato 99.9 1.9E-20 6.4E-25 201.8 25.7 185 117-421 119-333 (420)
48 1sq9_A Antiviral protein SKI8; 99.9 3.8E-20 1.3E-24 197.5 27.1 234 19-412 83-396 (397)
49 3odt_A Protein DOA1; ubiquitin 99.9 4E-19 1.4E-23 182.3 33.5 260 18-413 30-298 (313)
50 1p22_A F-BOX/WD-repeat protein 99.9 1.2E-19 4.2E-24 198.6 30.8 219 18-413 144-367 (435)
51 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.4E-19 4.9E-24 198.1 31.2 301 18-412 130-443 (445)
52 3fm0_A Protein CIAO1; WDR39,SG 99.9 1.8E-19 6.1E-24 191.9 30.9 237 18-413 74-337 (345)
53 2hes_X YDR267CP; beta-propelle 99.9 2E-19 6.7E-24 190.4 30.9 233 19-411 26-280 (330)
54 2w18_A PALB2, fancn, partner a 99.9 8.8E-20 3E-24 196.0 28.3 188 115-409 155-355 (356)
55 3frx_A Guanine nucleotide-bind 99.9 2.1E-19 7.3E-24 189.2 30.9 183 117-421 40-237 (319)
56 2ovr_B FBW7, F-BOX/WD repeat p 99.9 4.7E-19 1.6E-23 194.0 34.3 218 116-418 178-398 (445)
57 3dm0_A Maltose-binding peripla 99.9 2.7E-19 9.3E-24 208.2 33.3 236 20-420 398-641 (694)
58 3gre_A Serine/threonine-protei 99.9 3.1E-20 1.1E-24 202.1 22.8 111 296-422 231-370 (437)
59 2xzm_R RACK1; ribosome, transl 99.9 2.4E-19 8.2E-24 190.3 28.9 223 19-411 90-340 (343)
60 1k8k_C P40, ARP2/3 complex 41 99.8 3.4E-19 1.2E-23 187.7 29.5 229 18-412 20-275 (372)
61 4g56_B MGC81050 protein; prote 99.8 5.8E-20 2E-24 197.2 23.9 242 18-424 17-271 (357)
62 3ei3_B DNA damage-binding prot 99.8 3.3E-19 1.1E-23 190.5 29.0 266 19-411 88-382 (383)
63 1pgu_A Actin interacting prote 99.8 4.8E-19 1.6E-23 199.5 31.7 313 19-423 221-585 (615)
64 1r5m_A SIR4-interacting protei 99.8 5.3E-19 1.8E-23 188.7 29.4 273 20-413 60-363 (425)
65 3i2n_A WD repeat-containing pr 99.8 2.3E-19 7.9E-24 187.6 25.7 249 18-412 81-354 (357)
66 2pm7_B Protein transport prote 99.8 5.1E-19 1.8E-23 184.1 27.6 181 117-412 31-239 (297)
67 2pm9_A Protein WEB1, protein t 99.8 5.9E-20 2E-24 197.0 20.4 239 18-416 79-342 (416)
68 2j04_B YDR362CP, TAU91; beta p 99.8 1.3E-19 4.5E-24 206.0 24.2 239 19-410 226-516 (524)
69 3dm0_A Maltose-binding peripla 99.8 5.6E-19 1.9E-23 205.5 30.1 224 18-411 443-693 (694)
70 1p22_A F-BOX/WD-repeat protein 99.8 3E-19 1E-23 195.5 26.1 228 18-413 184-416 (435)
71 3v7d_B Cell division control p 99.8 1.7E-18 5.9E-23 189.8 31.9 225 18-413 174-423 (464)
72 3mkq_A Coatomer beta'-subunit; 99.8 1.9E-18 6.6E-23 202.4 34.0 239 17-423 24-271 (814)
73 3ei3_B DNA damage-binding prot 99.8 1.8E-18 6.2E-23 184.8 30.6 220 40-422 65-293 (383)
74 2aq5_A Coronin-1A; WD40 repeat 99.8 2.7E-19 9.2E-24 193.3 24.4 232 24-421 54-310 (402)
75 1pgu_A Actin interacting prote 99.8 1.4E-18 4.7E-23 195.8 30.6 236 17-421 29-293 (615)
76 3dwl_C Actin-related protein 2 99.8 3.3E-20 1.1E-24 197.2 16.4 229 18-412 23-282 (377)
77 2j04_B YDR362CP, TAU91; beta p 99.8 8.6E-20 2.9E-24 207.6 20.7 226 24-411 180-428 (524)
78 4e54_B DNA damage-binding prot 99.8 1.9E-19 6.6E-24 197.5 22.3 114 295-423 225-339 (435)
79 3dw8_B Serine/threonine-protei 99.8 4.6E-19 1.6E-23 192.2 25.0 110 295-422 243-383 (447)
80 1yfq_A Cell cycle arrest prote 99.8 6.2E-19 2.1E-23 183.8 25.0 240 18-421 24-292 (342)
81 2vdu_B TRNA (guanine-N(7)-)-me 99.8 2.2E-18 7.7E-23 189.6 30.2 177 116-409 124-337 (450)
82 4a11_B DNA excision repair pro 99.8 2.4E-19 8.2E-24 190.6 21.7 227 25-416 21-281 (408)
83 3dwl_C Actin-related protein 2 99.8 3.7E-20 1.3E-24 196.8 14.5 199 117-423 33-252 (377)
84 3gre_A Serine/threonine-protei 99.8 3E-19 1E-23 194.2 21.9 114 294-423 185-304 (437)
85 3zwl_B Eukaryotic translation 99.8 6.3E-18 2.1E-22 176.8 30.8 230 18-412 87-347 (369)
86 1gxr_A ESG1, transducin-like e 99.8 3.3E-18 1.1E-22 177.0 28.2 107 297-422 159-265 (337)
87 3lrv_A PRE-mRNA-splicing facto 99.8 1.2E-18 3.9E-23 184.8 25.1 102 296-414 187-295 (343)
88 2pm9_A Protein WEB1, protein t 99.8 5.7E-19 2E-23 189.2 22.1 116 295-425 182-308 (416)
89 3i2n_A WD repeat-containing pr 99.8 1.8E-18 6.1E-23 180.8 24.8 244 18-415 31-295 (357)
90 3sfz_A APAF-1, apoptotic pepti 99.8 2.1E-19 7.3E-24 221.3 20.6 243 18-422 973-1218(1249)
91 3jrp_A Fusion protein of prote 99.8 4.9E-18 1.7E-22 178.6 27.9 213 39-413 2-242 (379)
92 3vu4_A KMHSV2; beta-propeller 99.8 1.5E-18 5.1E-23 185.9 23.9 118 294-413 210-338 (355)
93 4e54_B DNA damage-binding prot 99.8 4.8E-19 1.7E-23 194.3 20.3 241 18-412 132-431 (435)
94 1l0q_A Surface layer protein; 99.8 3.5E-17 1.2E-21 174.7 34.0 232 19-421 3-243 (391)
95 3bg1_A Protein SEC13 homolog; 99.8 1.1E-18 3.7E-23 183.6 21.3 208 41-411 6-247 (316)
96 2xyi_A Probable histone-bindin 99.8 6.4E-18 2.2E-22 185.3 27.9 242 18-411 141-410 (430)
97 1k8k_C P40, ARP2/3 complex 41 99.8 6.8E-18 2.3E-22 177.8 26.9 230 42-423 2-245 (372)
98 3sfz_A APAF-1, apoptotic pepti 99.8 2.4E-17 8.2E-22 203.0 34.9 274 18-411 627-913 (1249)
99 1l0q_A Surface layer protein; 99.8 1.2E-16 4.1E-21 170.5 35.1 234 18-422 44-286 (391)
100 3mkq_A Coatomer beta'-subunit; 99.8 8.9E-18 3E-22 196.8 28.6 219 40-425 5-231 (814)
101 3k26_A Polycomb protein EED; W 99.8 4.3E-18 1.5E-22 178.2 23.0 191 117-414 44-263 (366)
102 1yfq_A Cell cycle arrest prote 99.8 8.1E-18 2.8E-22 175.4 24.8 222 19-409 71-322 (342)
103 3odt_A Protein DOA1; ubiquitin 99.8 2.6E-17 8.9E-22 168.7 28.1 249 39-422 9-266 (313)
104 3jro_A Fusion protein of prote 99.8 4.6E-18 1.6E-22 200.7 24.9 248 18-413 22-287 (753)
105 2aq5_A Coronin-1A; WD40 repeat 99.8 1.1E-17 3.8E-22 180.6 24.8 231 18-413 94-344 (402)
106 4h5i_A Guanine nucleotide-exch 99.8 2.8E-17 9.6E-22 177.0 27.3 114 300-425 196-315 (365)
107 4gga_A P55CDC, cell division c 99.8 6.8E-17 2.3E-21 176.1 30.1 229 116-425 124-367 (420)
108 4gq1_A NUP37; propeller, trans 99.8 8.9E-18 3E-22 182.4 22.1 258 19-411 102-389 (393)
109 4aez_A CDC20, WD repeat-contai 99.8 3.4E-17 1.2E-21 177.2 25.9 227 115-422 111-349 (401)
110 3bws_A Protein LP49; two-domai 99.8 3.6E-16 1.2E-20 169.1 33.6 224 18-411 181-432 (433)
111 3dw8_B Serine/threonine-protei 99.8 3.7E-17 1.3E-21 177.1 25.2 115 294-422 192-327 (447)
112 3f3f_A Nucleoporin SEH1; struc 99.8 6.8E-17 2.3E-21 166.3 25.9 106 295-415 128-253 (351)
113 4aow_A Guanine nucleotide-bind 99.8 2.1E-16 7.1E-21 164.2 29.5 215 40-421 30-256 (340)
114 2oaj_A Protein SNI1; WD40 repe 99.8 3.2E-17 1.1E-21 197.8 26.2 198 46-412 15-243 (902)
115 4ggc_A P55CDC, cell division c 99.8 3.4E-16 1.2E-20 161.0 29.4 228 117-425 45-287 (318)
116 2xyi_A Probable histone-bindin 99.8 1E-16 3.5E-21 175.7 25.6 103 295-413 248-355 (430)
117 3lrv_A PRE-mRNA-splicing facto 99.8 2.1E-17 7.2E-22 175.0 19.4 111 294-421 142-254 (343)
118 2vdu_B TRNA (guanine-N(7)-)-me 99.7 9.1E-17 3.1E-21 176.7 23.7 107 297-420 167-280 (450)
119 2oaj_A Protein SNI1; WD40 repe 99.7 5.8E-16 2E-20 186.7 31.3 233 17-410 28-311 (902)
120 3mmy_A MRNA export factor; mRN 99.7 3.4E-16 1.2E-20 163.5 24.7 260 39-423 30-316 (368)
121 3jro_A Fusion protein of prote 99.7 4.8E-16 1.6E-20 183.5 25.0 210 42-413 3-240 (753)
122 3bws_A Protein LP49; two-domai 99.7 3.9E-15 1.3E-19 161.0 29.2 238 17-418 133-397 (433)
123 2w18_A PALB2, fancn, partner a 99.7 1.4E-15 4.7E-20 163.5 23.7 55 296-351 300-355 (356)
124 4gq1_A NUP37; propeller, trans 99.7 2.8E-15 9.5E-20 162.6 25.1 204 115-422 109-359 (393)
125 2hqs_A Protein TOLB; TOLB, PAL 99.7 1.9E-14 6.3E-19 157.9 31.2 238 18-425 144-400 (415)
126 1pby_B Quinohemoprotein amine 99.6 2.2E-13 7.4E-18 140.9 32.2 99 302-420 220-319 (337)
127 3u4y_A Uncharacterized protein 99.6 1.8E-13 6.2E-18 142.4 28.7 273 18-411 10-304 (331)
128 2j04_A TAU60, YPL007P, hypothe 99.6 1.4E-14 4.8E-19 164.7 18.6 112 295-424 145-267 (588)
129 2j04_A TAU60, YPL007P, hypothe 99.6 1.6E-14 5.3E-19 164.3 18.5 93 297-410 198-296 (588)
130 1nir_A Nitrite reductase; hemo 99.6 6.5E-13 2.2E-17 151.4 31.7 281 18-415 149-462 (543)
131 1ri6_A Putative isomerase YBHE 99.6 6.3E-12 2.2E-16 130.2 32.5 103 299-412 149-263 (343)
132 2hqs_A Protein TOLB; TOLB, PAL 99.5 1.2E-12 4.2E-17 143.3 27.9 94 301-412 247-345 (415)
133 2ojh_A Uncharacterized protein 99.5 1E-12 3.4E-17 132.2 24.7 98 299-413 149-260 (297)
134 3vgz_A Uncharacterized protein 99.5 1.2E-11 3.9E-16 129.2 32.9 97 299-413 204-305 (353)
135 1nir_A Nitrite reductase; hemo 99.5 4.7E-12 1.6E-16 144.2 29.0 189 117-420 302-523 (543)
136 1ri6_A Putative isomerase YBHE 99.5 9.5E-12 3.2E-16 128.8 28.5 103 299-415 198-312 (343)
137 1jmx_B Amine dehydrogenase; ox 99.5 9.2E-12 3.1E-16 129.5 28.0 94 306-419 238-333 (349)
138 2z3z_A Dipeptidyl aminopeptida 99.5 1E-12 3.4E-17 152.3 21.9 229 117-421 101-353 (706)
139 2ecf_A Dipeptidyl peptidase IV 99.5 2.1E-12 7.3E-17 150.2 22.4 107 301-421 263-377 (741)
140 2ojh_A Uncharacterized protein 99.5 1.3E-11 4.4E-16 124.1 24.6 181 115-414 20-207 (297)
141 3hfq_A Uncharacterized protein 99.4 8E-11 2.7E-15 123.7 29.9 105 299-417 207-323 (347)
142 3scy_A Hypothetical bacterial 99.4 1.9E-10 6.4E-15 121.8 31.6 105 299-415 175-295 (361)
143 2oit_A Nucleoporin 214KDA; NH2 99.4 4.5E-11 1.5E-15 132.2 25.9 112 294-421 165-290 (434)
144 3scy_A Hypothetical bacterial 99.4 3.2E-10 1.1E-14 120.0 31.2 108 299-419 231-345 (361)
145 1xfd_A DIP, dipeptidyl aminope 99.4 9.2E-12 3.2E-16 144.2 20.8 278 18-410 28-341 (723)
146 3hfq_A Uncharacterized protein 99.4 3.7E-10 1.3E-14 118.7 31.0 104 299-412 160-272 (347)
147 3vgz_A Uncharacterized protein 99.4 6.2E-11 2.1E-15 123.6 24.5 189 117-413 69-264 (353)
148 3u4y_A Uncharacterized protein 99.4 2.3E-10 7.7E-15 118.9 28.4 99 301-414 108-210 (331)
149 2ecf_A Dipeptidyl peptidase IV 99.3 5E-11 1.7E-15 138.6 23.8 99 299-414 310-416 (741)
150 1pby_B Quinohemoprotein amine 99.3 2.6E-10 8.8E-15 117.7 25.0 56 117-172 11-73 (337)
151 3o4h_A Acylamino-acid-releasin 99.3 2E-11 6.9E-16 138.5 17.7 91 301-409 175-274 (582)
152 1xfd_A DIP, dipeptidyl aminope 99.3 2.8E-11 9.6E-16 140.2 17.6 52 116-167 36-103 (723)
153 2oit_A Nucleoporin 214KDA; NH2 99.3 8.9E-12 3E-16 137.8 11.0 108 296-421 113-232 (434)
154 1jof_A Carboxy-CIS,CIS-muconat 99.3 1.6E-09 5.5E-14 115.7 27.5 105 300-414 166-294 (365)
155 2z3z_A Dipeptidyl aminopeptida 99.2 1.6E-09 5.4E-14 125.4 28.6 97 298-412 330-436 (706)
156 1k32_A Tricorn protease; prote 99.2 2.8E-10 9.5E-15 138.8 22.8 104 300-422 357-471 (1045)
157 1k32_A Tricorn protease; prote 99.2 2.8E-10 9.6E-15 138.8 21.4 95 299-410 398-501 (1045)
158 1jmx_B Amine dehydrogenase; ox 99.2 1.7E-09 5.9E-14 112.2 24.0 57 117-173 21-83 (349)
159 1z68_A Fibroblast activation p 99.2 5.8E-11 2E-15 137.9 13.7 112 18-168 27-143 (719)
160 3o4h_A Acylamino-acid-releasin 99.2 3E-10 1E-14 128.8 19.4 99 302-422 133-237 (582)
161 1jof_A Carboxy-CIS,CIS-muconat 99.2 2.6E-09 9E-14 114.0 25.1 77 323-412 255-342 (365)
162 1z68_A Fibroblast activation p 99.1 5.9E-10 2E-14 129.5 13.4 51 117-167 36-102 (719)
163 4a5s_A Dipeptidyl peptidase 4 99.0 3.2E-09 1.1E-13 124.6 17.7 111 18-168 28-145 (740)
164 2oiz_A Aromatic amine dehydrog 99.0 5.2E-08 1.8E-12 104.6 23.5 96 298-412 218-335 (361)
165 3pe7_A Oligogalacturonate lyas 99.0 2.8E-08 9.5E-13 105.4 20.5 106 301-421 216-338 (388)
166 1q7f_A NHL, brain tumor CG1071 98.9 9.5E-07 3.2E-11 89.9 30.6 95 300-411 184-280 (286)
167 3dsm_A Uncharacterized protein 98.9 8.4E-07 2.9E-11 93.6 29.6 94 300-410 202-301 (328)
168 4a5s_A Dipeptidyl peptidase 4 98.9 2.5E-08 8.6E-13 117.0 18.6 51 117-167 36-104 (740)
169 3azo_A Aminopeptidase; POP fam 98.9 1.1E-07 3.6E-12 109.1 21.8 104 301-421 217-334 (662)
170 3c5m_A Oligogalacturonate lyas 98.8 8.5E-08 2.9E-12 101.4 18.1 103 301-421 264-392 (396)
171 3pe7_A Oligogalacturonate lyas 98.8 3.4E-07 1.2E-11 96.9 22.0 99 298-412 165-274 (388)
172 3fvz_A Peptidyl-glycine alpha- 98.8 1.3E-06 4.5E-11 91.8 25.3 98 298-411 215-322 (329)
173 3dsm_A Uncharacterized protein 98.8 1.1E-06 3.7E-11 92.7 24.6 177 117-412 64-254 (328)
174 2gop_A Trilobed protease; beta 98.7 4.6E-06 1.6E-10 86.9 27.0 96 300-422 243-340 (347)
175 2gop_A Trilobed protease; beta 98.7 1.4E-06 4.9E-11 90.8 22.4 90 302-419 201-298 (347)
176 3c5m_A Oligogalacturonate lyas 98.7 4.7E-07 1.6E-11 95.7 18.4 97 299-411 166-273 (396)
177 3e5z_A Putative gluconolactona 98.7 1.2E-05 4.2E-10 82.3 27.7 89 299-411 191-284 (296)
178 3no2_A Uncharacterized protein 98.6 2E-05 6.8E-10 81.5 28.1 103 297-416 142-256 (276)
179 1qks_A Cytochrome CD1 nitrite 98.6 1.4E-05 4.8E-10 91.5 29.2 183 116-413 176-375 (567)
180 1xip_A Nucleoporin NUP159; bet 98.6 1.5E-06 5E-11 95.0 19.3 82 298-398 143-231 (388)
181 2dg1_A DRP35, lactonase; beta 98.6 5.3E-05 1.8E-09 78.6 30.4 86 300-402 203-301 (333)
182 1qks_A Cytochrome CD1 nitrite 98.6 5.2E-05 1.8E-09 86.8 32.5 188 117-411 218-421 (567)
183 1q7f_A NHL, brain tumor CG1071 98.5 1.4E-05 4.8E-10 81.2 24.2 92 300-409 141-236 (286)
184 1pjx_A Dfpase, DIISOPROPYLFLUO 98.5 5.9E-05 2E-09 77.1 28.2 97 300-413 197-301 (314)
185 3no2_A Uncharacterized protein 98.5 5.5E-06 1.9E-10 85.7 20.4 171 117-411 15-195 (276)
186 3fvz_A Peptidyl-glycine alpha- 98.5 2.9E-06 9.9E-11 89.2 18.6 104 299-418 164-284 (329)
187 3azo_A Aminopeptidase; POP fam 98.5 5.1E-06 1.8E-10 95.1 21.9 97 302-415 266-371 (662)
188 2xdw_A Prolyl endopeptidase; a 98.5 3.7E-05 1.3E-09 89.5 27.8 98 300-413 310-416 (710)
189 1rwi_B Serine/threonine-protei 98.4 3.5E-05 1.2E-09 77.1 22.3 95 300-411 170-264 (270)
190 2mad_H Methylamine dehydrogena 98.4 8.6E-05 2.9E-09 80.2 26.8 102 299-417 232-356 (373)
191 2xdw_A Prolyl endopeptidase; a 98.3 7.1E-05 2.4E-09 87.1 25.7 98 300-410 258-365 (710)
192 2dg1_A DRP35, lactonase; beta 98.3 0.00053 1.8E-08 70.9 29.4 95 301-410 162-262 (333)
193 3sjl_D Methylamine dehydrogena 98.3 0.00024 8.1E-09 77.4 26.6 103 299-418 245-370 (386)
194 3e5z_A Putative gluconolactona 98.3 0.00011 3.6E-09 75.3 22.5 91 301-410 153-245 (296)
195 2oiz_A Aromatic amine dehydrog 98.2 2.7E-06 9.3E-11 91.2 9.6 98 299-413 29-142 (361)
196 3g4e_A Regucalcin; six bladed 98.1 0.0015 5.3E-08 67.1 27.7 85 300-401 170-262 (297)
197 2ghs_A AGR_C_1268P; regucalcin 98.1 0.0037 1.3E-07 65.3 30.7 84 301-402 201-293 (326)
198 1yr2_A Prolyl oligopeptidase; 98.1 0.00037 1.3E-08 81.6 25.2 96 300-412 340-442 (741)
199 1mda_H Methylamine dehydrogena 98.0 0.00036 1.2E-08 75.5 21.9 54 118-173 47-114 (368)
200 2hz6_A Endoplasmic reticulum t 98.0 2E-06 6.8E-11 92.7 4.1 92 298-412 99-193 (369)
201 2bkl_A Prolyl endopeptidase; m 98.0 0.0003 1E-08 81.7 22.1 97 302-414 253-352 (695)
202 2qe8_A Uncharacterized protein 98.0 0.00022 7.6E-09 75.3 19.2 72 321-408 247-318 (343)
203 2z2n_A Virginiamycin B lyase; 98.0 0.0098 3.3E-07 59.5 30.7 92 300-409 161-253 (299)
204 3g4e_A Regucalcin; six bladed 98.0 0.0032 1.1E-07 64.7 26.9 82 322-412 149-230 (297)
205 3c75_H MADH, methylamine dehyd 97.9 0.00043 1.5E-08 76.4 20.5 75 327-418 324-409 (426)
206 3hrp_A Uncharacterized protein 97.9 0.0039 1.3E-07 67.9 28.1 72 323-410 324-409 (409)
207 1kb0_A Quinohemoprotein alcoho 97.9 0.003 1E-07 73.6 27.7 105 297-419 333-515 (677)
208 2iwa_A Glutamine cyclotransfer 97.9 0.0046 1.6E-07 63.9 25.8 174 117-412 44-238 (266)
209 1xip_A Nucleoporin NUP159; bet 97.9 6.3E-05 2.1E-09 82.1 12.3 89 299-412 104-192 (388)
210 2bkl_A Prolyl endopeptidase; m 97.9 0.00033 1.1E-08 81.3 18.8 94 301-413 202-306 (695)
211 3nol_A Glutamine cyclotransfer 97.8 0.002 6.8E-08 66.4 21.8 162 117-400 65-244 (262)
212 1rwi_B Serine/threonine-protei 97.8 0.00086 2.9E-08 66.8 17.8 95 300-411 128-222 (270)
213 1pjx_A Dfpase, DIISOPROPYLFLUO 97.7 0.0066 2.3E-07 61.6 24.0 99 301-412 153-257 (314)
214 2ece_A 462AA long hypothetical 97.7 0.0012 4.2E-08 73.0 18.7 85 323-419 322-432 (462)
215 1yr2_A Prolyl oligopeptidase; 97.7 0.0035 1.2E-07 73.3 23.5 98 300-412 242-351 (741)
216 1kb0_A Quinohemoprotein alcoho 97.7 0.0015 5.2E-08 76.1 20.2 85 299-400 455-540 (677)
217 3nok_A Glutaminyl cyclase; bet 97.7 0.0028 9.4E-08 65.5 19.7 56 117-173 75-134 (268)
218 3sjl_D Methylamine dehydrogena 97.6 0.00017 5.7E-09 78.7 10.6 102 300-418 58-176 (386)
219 2ece_A 462AA long hypothetical 97.6 0.0069 2.4E-07 67.0 23.2 105 298-412 225-353 (462)
220 2z2n_A Virginiamycin B lyase; 97.6 0.072 2.5E-06 53.0 32.0 92 300-411 203-295 (299)
221 2qc5_A Streptogramin B lactona 97.6 0.077 2.6E-06 52.8 31.0 92 300-409 166-258 (300)
222 3mbr_X Glutamine cyclotransfer 97.6 0.015 5.2E-07 59.1 23.4 57 117-173 43-103 (243)
223 3hrp_A Uncharacterized protein 97.5 0.014 4.8E-07 63.5 23.9 96 300-411 239-354 (409)
224 2mad_H Methylamine dehydrogena 97.4 0.0011 3.8E-08 71.5 14.0 94 302-412 48-157 (373)
225 2ghs_A AGR_C_1268P; regucalcin 97.4 0.054 1.8E-06 56.4 26.6 97 301-409 161-258 (326)
226 1mda_H Methylamine dehydrogena 97.4 0.00047 1.6E-08 74.6 9.7 94 302-411 47-158 (368)
227 2qc5_A Streptogramin B lactona 97.4 0.14 4.9E-06 50.8 28.4 90 300-409 208-298 (300)
228 3q7m_A Lipoprotein YFGL, BAMB; 97.3 0.23 8E-06 52.0 31.3 57 117-173 113-171 (376)
229 3q7m_A Lipoprotein YFGL, BAMB; 97.3 0.24 8.1E-06 51.9 29.7 92 299-412 247-338 (376)
230 2iwa_A Glutamine cyclotransfer 97.3 0.027 9.4E-07 58.0 21.5 97 299-414 84-184 (266)
231 1yiq_A Quinohemoprotein alcoho 97.3 0.04 1.4E-06 64.2 25.2 60 343-420 455-514 (689)
232 1yiq_A Quinohemoprotein alcoho 97.2 0.02 6.9E-07 66.7 21.9 99 299-413 181-340 (689)
233 3c75_H MADH, methylamine dehyd 97.2 0.0012 4.1E-08 72.9 10.7 98 301-414 99-212 (426)
234 3iuj_A Prolyl endopeptidase; h 97.1 0.014 4.7E-07 67.8 19.7 95 300-412 304-406 (693)
235 1fwx_A Nitrous oxide reductase 97.1 0.015 5.1E-07 66.4 19.2 102 301-411 254-361 (595)
236 1kv9_A Type II quinohemoprotei 96.9 0.055 1.9E-06 62.7 22.0 57 117-173 76-145 (668)
237 3dr2_A Exported gluconolactona 96.8 0.14 4.9E-06 52.2 22.3 92 301-409 169-265 (305)
238 3nok_A Glutaminyl cyclase; bet 96.8 0.047 1.6E-06 56.3 17.8 96 299-413 114-212 (268)
239 1kv9_A Type II quinohemoprotei 96.7 0.094 3.2E-06 60.8 21.3 85 298-399 435-520 (668)
240 3nol_A Glutamine cyclotransfer 96.6 0.076 2.6E-06 54.5 18.0 96 299-413 105-203 (262)
241 2ad6_A Methanol dehydrogenase 96.6 0.16 5.6E-06 57.6 22.6 56 346-418 446-501 (571)
242 3hxj_A Pyrrolo-quinoline quino 96.5 0.18 6.3E-06 51.1 20.2 92 300-412 234-325 (330)
243 3amr_A 3-phytase; beta-propell 96.5 0.35 1.2E-05 51.7 22.7 101 299-410 151-262 (355)
244 3mbr_X Glutamine cyclotransfer 96.5 0.31 1E-05 49.5 21.0 96 299-413 83-181 (243)
245 1flg_A Protein (quinoprotein e 96.4 0.092 3.2E-06 59.9 18.7 83 299-400 464-549 (582)
246 3iuj_A Prolyl endopeptidase; h 96.3 0.016 5.6E-07 67.2 12.0 109 299-421 153-279 (693)
247 2qe8_A Uncharacterized protein 96.2 0.042 1.4E-06 57.6 13.6 109 300-410 92-223 (343)
248 3dr2_A Exported gluconolactona 96.1 0.029 9.9E-07 57.6 11.6 85 297-397 63-147 (305)
249 1fwx_A Nitrous oxide reductase 96.0 0.24 8.1E-06 56.6 19.0 111 298-412 172-309 (595)
250 2xzh_A Clathrin heavy chain 1; 96.0 2.1 7.1E-05 45.5 26.2 201 117-418 87-297 (365)
251 2hz6_A Endoplasmic reticulum t 95.9 0.00052 1.8E-08 73.7 -2.9 59 293-354 11-69 (369)
252 1w6s_A Methanol dehydrogenase 95.5 1.2 4.2E-05 50.8 22.9 24 390-413 482-505 (599)
253 1bpo_A Protein (clathrin); cla 95.5 3.8 0.00013 45.1 26.4 200 117-417 86-295 (494)
254 2ad6_A Methanol dehydrogenase 95.5 0.31 1.1E-05 55.3 17.7 82 299-397 442-523 (571)
255 3hxj_A Pyrrolo-quinoline quino 95.5 0.11 3.8E-06 52.8 12.7 87 299-408 155-241 (330)
256 1flg_A Protein (quinoprotein e 94.9 3.6 0.00012 46.7 24.0 55 119-173 80-145 (582)
257 1npe_A Nidogen, entactin; glyc 94.5 4.2 0.00014 40.1 30.9 98 301-418 146-245 (267)
258 1ijq_A LDL receptor, low-densi 94.0 6.4 0.00022 40.4 26.7 96 300-411 98-195 (316)
259 1w6s_A Methanol dehydrogenase 93.8 4.8 0.00016 45.9 22.1 57 117-173 73-149 (599)
260 2xe4_A Oligopeptidase B; hydro 92.4 0.38 1.3E-05 56.3 10.3 97 300-412 200-305 (751)
261 1npe_A Nidogen, entactin; glyc 92.3 2.6 9.1E-05 41.6 15.1 96 299-410 56-154 (267)
262 1k3i_A Galactose oxidase precu 92.2 3.1 0.0001 47.6 17.4 96 301-411 369-497 (656)
263 3v65_B Low-density lipoprotein 91.9 15 0.0005 39.0 23.5 94 302-411 182-277 (386)
264 2fp8_A Strictosidine synthase; 91.9 12 0.00041 37.9 25.8 74 324-412 231-314 (322)
265 3p5b_L Low density lipoprotein 90.9 19 0.00065 38.4 25.8 95 300-411 180-277 (400)
266 3v65_B Low-density lipoprotein 90.8 19 0.00064 38.2 28.3 101 301-418 225-325 (386)
267 3pbp_A Nucleoporin NUP82; beta 90.5 1.4 4.6E-05 48.4 11.3 109 299-411 39-158 (452)
268 2p4o_A Hypothetical protein; p 90.2 2.4 8.4E-05 43.1 12.7 80 311-410 22-103 (306)
269 3v64_C Agrin; beta propeller, 89.2 23 0.00079 36.8 24.2 94 301-411 138-234 (349)
270 3ei3_A DNA damage-binding prot 88.0 22 0.00075 43.8 20.9 95 301-411 904-999 (1158)
271 1xi4_A Clathrin heavy chain; a 86.6 7.1 0.00024 48.9 15.0 48 117-164 86-134 (1630)
272 3qqz_A Putative uncharacterize 86.6 7.5 0.00026 39.4 13.2 103 295-410 43-150 (255)
273 3sov_A LRP-6, low-density lipo 86.1 33 0.0011 35.2 24.0 95 301-411 101-197 (318)
274 3sre_A PON1, serum paraoxonase 85.5 6 0.0002 42.1 12.3 97 300-414 138-255 (355)
275 2fp8_A Strictosidine synthase; 85.4 7 0.00024 39.7 12.6 86 299-400 163-248 (322)
276 2xe4_A Oligopeptidase B; hydro 85.4 1.6 5.4E-05 51.1 8.4 75 319-411 170-256 (751)
277 3p5b_L Low density lipoprotein 84.2 46 0.0016 35.3 32.4 102 302-418 226-327 (400)
278 4a2l_A BT_4663, two-component 83.8 69 0.0024 37.0 31.2 95 299-411 375-480 (795)
279 4hw6_A Hypothetical protein, I 82.9 56 0.0019 35.2 21.8 103 299-408 248-371 (433)
280 2p9w_A MAL S 1 allergenic prot 82.4 5.2 0.00018 42.3 10.0 99 299-411 98-215 (334)
281 1ijq_A LDL receptor, low-densi 82.1 47 0.0016 33.8 32.8 102 301-418 143-245 (316)
282 3kya_A Putative phosphatase; s 81.4 71 0.0024 35.4 21.7 31 322-352 310-340 (496)
283 3amr_A 3-phytase; beta-propell 81.2 6 0.00021 42.1 10.0 100 296-411 45-162 (355)
284 3m0c_C LDL receptor, low-densi 81.1 92 0.0032 36.5 26.6 96 300-411 492-589 (791)
285 2p4o_A Hypothetical protein; p 80.4 22 0.00075 35.8 13.9 95 299-410 51-146 (306)
286 1k3i_A Galactose oxidase precu 80.2 6.2 0.00021 45.0 10.6 95 302-412 220-324 (656)
287 3m0c_C LDL receptor, low-densi 77.9 1.1E+02 0.0039 35.7 33.8 103 301-418 537-639 (791)
288 3zwu_A Alkaline phosphatase PH 77.4 6.2 0.00021 45.0 9.3 61 324-398 478-548 (592)
289 1n7d_A LDL receptor, low-densi 77.3 3.5 0.00012 47.9 7.3 95 300-411 474-571 (699)
290 3qqz_A Putative uncharacterize 77.2 63 0.0022 32.4 27.1 73 322-408 173-250 (255)
291 3tc9_A Hypothetical hydrolase; 76.4 18 0.00062 39.0 12.4 94 301-411 159-257 (430)
292 3v64_C Agrin; beta propeller, 75.4 79 0.0027 32.6 31.5 95 301-412 182-276 (349)
293 3tc9_A Hypothetical hydrolase; 74.7 10 0.00036 40.9 9.9 72 324-411 228-301 (430)
294 4a2l_A BT_4663, two-component 74.1 1.3E+02 0.0045 34.5 30.6 91 300-411 426-526 (795)
295 2p9w_A MAL S 1 allergenic prot 73.6 22 0.00074 37.5 11.6 101 299-414 33-169 (334)
296 2ism_A Putative oxidoreductase 70.8 21 0.00071 37.3 10.8 92 298-400 48-154 (352)
297 3a9g_A Putative uncharacterize 70.2 26 0.00089 36.7 11.4 94 298-400 46-154 (354)
298 4hw6_A Hypothetical protein, I 70.1 12 0.0004 40.6 8.9 73 324-412 230-305 (433)
299 1cru_A Protein (soluble quinop 68.3 28 0.00095 38.0 11.5 64 323-399 28-98 (454)
300 3ei3_A DNA damage-binding prot 67.4 36 0.0012 41.9 13.3 91 302-411 493-591 (1158)
301 2ism_A Putative oxidoreductase 65.2 35 0.0012 35.5 11.2 70 323-410 32-113 (352)
302 3pbp_A Nucleoporin NUP82; beta 64.9 27 0.00093 38.2 10.3 80 320-413 123-212 (452)
303 4a9v_A PHOX; hydrolase, beta-p 63.3 25 0.00087 39.8 9.9 63 322-398 476-548 (592)
304 3das_A Putative oxidoreductase 62.2 58 0.002 34.3 12.1 74 322-410 32-115 (347)
305 1cru_A Protein (soluble quinop 58.3 64 0.0022 35.1 12.1 93 301-401 48-164 (454)
306 3v9f_A Two-component system se 57.6 49 0.0017 38.2 11.6 93 301-411 469-568 (781)
307 3sre_A PON1, serum paraoxonase 56.8 36 0.0012 36.0 9.4 82 301-399 203-285 (355)
308 3a9g_A Putative uncharacterize 53.1 51 0.0018 34.4 9.9 72 322-411 29-114 (354)
309 2g8s_A Glucose/sorbosone dehyd 50.5 59 0.002 33.8 9.8 44 298-341 36-89 (353)
310 3sov_A LRP-6, low-density lipo 49.6 2.2E+02 0.0076 28.8 31.6 79 323-418 167-245 (318)
311 3kya_A Putative phosphatase; s 49.5 70 0.0024 35.4 10.6 65 323-402 140-214 (496)
312 3q6k_A 43.2 kDa salivary prote 48.8 1.9E+02 0.0064 30.8 13.4 54 301-354 123-191 (381)
313 1tl2_A L10, protein (tachylect 44.4 12 0.0004 37.5 2.9 72 323-408 42-113 (236)
314 2xbg_A YCF48-like protein; pho 41.9 2.9E+02 0.0098 27.9 14.0 72 319-408 160-231 (327)
315 4gq2_M Nucleoporin NUP120; bet 41.5 70 0.0024 38.4 9.6 31 323-354 237-267 (950)
316 3das_A Putative oxidoreductase 40.1 1.9E+02 0.0065 30.2 11.7 97 299-400 51-159 (347)
317 2wg3_C Hedgehog-interacting pr 39.8 2.7E+02 0.0092 30.2 13.3 102 297-402 32-160 (463)
318 4a0p_A LRP6, LRP-6, low-densit 39.5 4.6E+02 0.016 29.5 25.3 95 301-412 102-198 (628)
319 3s94_A LRP-6, low-density lipo 38.1 4.7E+02 0.016 29.3 26.8 79 322-417 171-249 (619)
320 1n7d_A LDL receptor, low-densi 37.3 64 0.0022 37.1 8.1 96 301-411 519-614 (699)
321 1tl2_A L10, protein (tachylect 35.8 61 0.0021 32.4 6.5 67 324-404 90-156 (236)
322 3s94_A LRP-6, low-density lipo 35.2 3.5E+02 0.012 30.4 13.8 97 300-411 17-115 (619)
323 4gq2_M Nucleoporin NUP120; bet 31.8 1.1E+02 0.0036 36.8 9.0 36 382-417 237-272 (950)
324 2xzh_A Clathrin heavy chain 1; 30.3 5.1E+02 0.017 27.4 31.0 106 16-174 76-198 (365)
325 2xbg_A YCF48-like protein; pho 30.0 1.6E+02 0.0054 29.9 9.0 60 323-400 123-182 (327)
326 3v9f_A Two-component system se 29.2 6.7E+02 0.023 28.4 28.7 76 321-411 257-342 (781)
327 2g8s_A Glucose/sorbosone dehyd 27.5 2.7E+02 0.0092 28.6 10.4 81 314-410 264-351 (353)
328 4a0p_A LRP6, LRP-6, low-densit 27.1 7E+02 0.024 27.9 31.3 99 302-419 147-245 (628)
329 4fhn_B Nucleoporin NUP120; pro 26.8 75 0.0026 38.8 6.7 36 382-417 239-274 (1139)
330 1bpo_A Protein (clathrin); cla 26.7 6.7E+02 0.023 27.5 31.2 106 16-174 75-197 (494)
331 3sbq_A Nitrous-oxide reductase 25.8 1.4E+02 0.0048 33.9 7.9 103 302-411 299-408 (638)
332 3s25_A Hypothetical 7-bladed b 22.2 2.6E+02 0.0089 28.3 8.8 98 296-418 124-221 (302)
333 2vpj_A Kelch-like protein 12; 21.8 5.5E+02 0.019 24.8 17.6 50 117-166 78-139 (301)
No 1
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.3e-26 Score=248.73 Aligned_cols=226 Identities=22% Similarity=0.317 Sum_probs=177.9
Q ss_pred CCcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 17 ~~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
..++|+.|.++|++|||+++ ...+...+.+.+..+.+.+.+ .++++++.+
T Consensus 30 dg~~la~g~~~~~~iw~~~~---~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~------------- 79 (355)
T 3vu4_A 30 DQSCLILSTLKSFEIYNVHP---VAHIMSQEMRHLSKVRMLHRT--------------NYVAFVTGV------------- 79 (355)
T ss_dssp TSSEEEEECSSEEEEEEETT---EEEEEEEECSCCCEEEECTTS--------------SEEEEECSS-------------
T ss_pred CCCEEEEEcCCEEEEEecCC---cceeeeeecCCeEEEEEcCCC--------------CEEEEEECC-------------
Confidence 47789999999999999986 344555555567888776532 466666542
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEecCCEEEEEeCCEEEEEECCCC-ceeEEEecCC
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSSRVVAICQAAQVHCFDAATL-EIEYAILTNP 175 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s~~~LaVa~~~~I~iwDl~t~-~~~~tl~t~~ 175 (701)
+++|+|||+++++++.++.++..|.+|+++++.++++.+++|++||+.+. +.+.++.+ +
T Consensus 80 -------------------d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~ 139 (355)
T 3vu4_A 80 -------------------KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR-F 139 (355)
T ss_dssp -------------------TTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE-E
T ss_pred -------------------ccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc-C
Confidence 16899999999999999999999999999999999999999999999987 55444332 1
Q ss_pred CccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcC
Q 005349 176 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG 255 (701)
Q Consensus 176 ~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lG 255 (701)
.+.+++++.+||++
T Consensus 140 --------------~~~~~~s~~~la~~---------------------------------------------------- 153 (355)
T 3vu4_A 140 --------------GGVCEFSNGLLVYS---------------------------------------------------- 153 (355)
T ss_dssp --------------EEEEEEETTEEEEE----------------------------------------------------
T ss_pred --------------CceEEEEccEEEEe----------------------------------------------------
Confidence 01123333333332
Q ss_pred CccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc----------------EEEEeec
Q 005349 256 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----------------VIAQFRA 319 (701)
Q Consensus 256 d~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~----------------~i~~~~~ 319 (701)
++..+|.|+|||+.+++ .+..+++
T Consensus 154 ----------------------------------------sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 193 (355)
T 3vu4_A 154 ----------------------------------------NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA 193 (355)
T ss_dssp ----------------------------------------ESSCTTCEEEEECCC------------------CCEEECC
T ss_pred ----------------------------------------CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc
Confidence 12456889999999865 2688999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEe
Q 005349 320 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 399 (701)
Q Consensus 320 H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS 399 (701)
|..+|.+|+|+|||++||||+.||+.|+|||+.++ .+++++++|.+...|.+++|+|||++||+++
T Consensus 194 h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~--------------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 194 HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG--------------VLVREFRRGLDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC--------------CEEEEEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC--------------cEEEEEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence 99999999999999999999999975899999987 6788887774456799999999999999999
Q ss_pred CCCcEEEEecCCC
Q 005349 400 SRGTSHLFAINPL 412 (701)
Q Consensus 400 ~dgTI~Iwdl~~~ 412 (701)
.|++|+|||+...
T Consensus 260 ~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 260 DKWTLHVFEIFND 272 (355)
T ss_dssp TTCEEEEEESSCC
T ss_pred CCCEEEEEEccCC
Confidence 9999999999764
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.94 E-value=4.5e-25 Score=236.94 Aligned_cols=229 Identities=17% Similarity=0.215 Sum_probs=167.6
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeE---EeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHD---LVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~e---lvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
+++++.+.++.++|||++....... ....|++.|+++.+.|+. .+|+.++.
T Consensus 94 ~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg--------------~~l~sgs~------------ 147 (344)
T 4gqb_B 94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG--------------TQAVSGSK------------ 147 (344)
T ss_dssp TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS--------------SEEEEEET------------
T ss_pred CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC--------------CEEEEEeC------------
Confidence 5667667777799999987433222 223689999999998753 24554432
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecC---CEEEE-EeCCEEEEEECCCCceeE
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEY 169 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~---~~LaV-a~~~~I~iwDl~t~~~~~ 169 (701)
+++|++||++++++++++.. ...|.+++|++ .+|++ +.|++|++||+++++...
T Consensus 148 ---------------------d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 206 (344)
T 4gqb_B 148 ---------------------DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS 206 (344)
T ss_dssp ---------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE
T ss_pred ---------------------CCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceee
Confidence 26799999999999999974 77999999963 46665 568999999999998777
Q ss_pred EEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhc
Q 005349 170 AILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (701)
Q Consensus 170 tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~ 249 (701)
++..... +.... .+++.. + ++
T Consensus 207 ~~~~~~~------------~~~~~-----~~~~~p-------------~-------------~~---------------- 227 (344)
T 4gqb_B 207 QIGCSAP------------GYLPT-----SLAWHP-------------Q-------------QS---------------- 227 (344)
T ss_dssp ECC----------------CCCEE-----EEEECS-------------S-------------CT----------------
T ss_pred eeeccee------------eccce-----eeeecC-------------C-------------CC----------------
Confidence 6643210 00011 122221 0 00
Q ss_pred eeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEE
Q 005349 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (701)
Q Consensus 250 gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laF 329 (701)
..++++..||.|+|||+.+++++..|++|..+|.+|+|
T Consensus 228 ------------------------------------------~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f 265 (344)
T 4gqb_B 228 ------------------------------------------EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF 265 (344)
T ss_dssp ------------------------------------------TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred ------------------------------------------cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 01234567899999999999999999999999999999
Q ss_pred cCCC-CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 005349 330 DPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLF 407 (701)
Q Consensus 330 SPdG-~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~-~lAsgS~dgTI~Iw 407 (701)
+|+| ++|||||.||+ |+|||+.++ + +.++ +||. ..|++|+||||++ +|+++|.|++|++|
T Consensus 266 sp~g~~~lasgs~D~~-i~vwd~~~~--------------~-~~~~-~~H~-~~V~~v~~sp~~~~llas~s~D~~v~~w 327 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCS-LAVLDSSLS--------------E-LFRS-QAHR-DFVRDATWSPLNHSLLTTVGWDHQVVHH 327 (344)
T ss_dssp CSSSSCCEEEEETTSC-EEEECTTCC--------------E-EEEE-CCCS-SCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred ccCCCeEEEEEeCCCe-EEEEECCCC--------------c-EEEE-cCCC-CCEEEEEEeCCCCeEEEEEcCCCeEEEE
Confidence 9998 58999999998 999999875 3 3455 4654 4599999999986 57799999999999
Q ss_pred ecCCC
Q 005349 408 AINPL 412 (701)
Q Consensus 408 dl~~~ 412 (701)
++.+.
T Consensus 328 ~v~~~ 332 (344)
T 4gqb_B 328 VVPTE 332 (344)
T ss_dssp ECCC-
T ss_pred ECCCC
Confidence 99753
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.94 E-value=8.7e-25 Score=231.46 Aligned_cols=238 Identities=18% Similarity=0.274 Sum_probs=182.3
Q ss_pred cEEEEeccCCeEEEEecCCC-CeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 19 RVLLLGYRSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 19 ~vL~~g~~~g~qVwdv~~~~-~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
.++..+.++.++|||+.... .....+..|.+.|.++.+.|+. ++++.++.
T Consensus 50 ~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~--------------~~l~s~s~--------------- 100 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL--------------PIAASSSL--------------- 100 (321)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS--------------SEEEEEET---------------
T ss_pred EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC--------------CEEEEEeC---------------
Confidence 45666677889999998632 1222356789999999987532 34544332
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEec
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t 173 (701)
+++|++||+++++++.++.. +..+.+++|+ +++|++ +.+++|++||+.+++...++..
T Consensus 101 ------------------D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~ 162 (321)
T 3ow8_A 101 ------------------DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT 162 (321)
T ss_dssp ------------------TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC
T ss_pred ------------------CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC
Confidence 27899999999999999876 5688899997 467776 5688999999999988887765
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEE
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~ 253 (701)
+... + .-++|.. + |.
T Consensus 163 ~~~~---------------v----~~~~~sp-------------d--------------g~------------------- 177 (321)
T 3ow8_A 163 RGKF---------------I----LSIAYSP-------------D--------------GK------------------- 177 (321)
T ss_dssp SSSC---------------E----EEEEECT-------------T--------------SS-------------------
T ss_pred CCce---------------E----EEEEECC-------------C--------------CC-------------------
Confidence 4210 1 1123321 0 11
Q ss_pred cCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCC
Q 005349 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (701)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG 333 (701)
.++++..||.|+|||+.+++++..+++|..+|.+|+|+|||
T Consensus 178 ---------------------------------------~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~ 218 (321)
T 3ow8_A 178 ---------------------------------------YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 218 (321)
T ss_dssp ---------------------------------------EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS
T ss_pred ---------------------------------------EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC
Confidence 12234568999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 005349 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 334 ~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g 413 (701)
++|++|+.||+ |+|||+..+ ..+..+ .++. ..|.+++|+||+++|++++.|++|+|||+.+..
T Consensus 219 ~~l~s~s~dg~-i~iwd~~~~--------------~~~~~~-~~h~-~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 219 QLLVTASDDGY-IKIYDVQHA--------------NLAGTL-SGHA-SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp CEEEEECTTSC-EEEEETTTC--------------CEEEEE-CCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CEEEEEcCCCe-EEEEECCCc--------------ceeEEE-cCCC-CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence 99999999998 999999876 455555 4543 459999999999999999999999999998876
Q ss_pred CceeecCCCCC
Q 005349 414 GSVNFQPTDAN 424 (701)
Q Consensus 414 ~~~~~~~H~~~ 424 (701)
....+..|...
T Consensus 282 ~~~~~~~h~~~ 292 (321)
T 3ow8_A 282 CVHTFFDHQDQ 292 (321)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEEcCCCCc
Confidence 66677777543
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.93 E-value=2.1e-23 Score=221.65 Aligned_cols=240 Identities=15% Similarity=0.164 Sum_probs=179.9
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.++..+.++.++|||+.. ++....+..|.+.|.++.+.|+. .+|+.++.
T Consensus 68 ~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~~~~~v~~~~~s~~~--------------~~l~s~~~--------------- 117 (340)
T 1got_B 68 RLLLSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAYAPSG--------------NYVACGGL--------------- 117 (340)
T ss_dssp SEEEEEETTTEEEEEETTT-CCEEEEEECSSSCEEEEEECTTS--------------SEEEEEET---------------
T ss_pred CEEEEEeCCCcEEEEECCC-CCcceEeecCCccEEEEEECCCC--------------CEEEEEeC---------------
Confidence 3455556666799999987 45556667789999999998742 24554432
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCc----EEEEEe-cCCCEEEEEec--CCEEEEEeCCEEEEEECCCCceeEE
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQS----YVHMLK-FRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYA 170 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~----~v~tL~-f~s~V~sV~~s--~~~LaVa~~~~I~iwDl~t~~~~~t 170 (701)
+++|++||+.+++ ....+. +...|.++.|+ +++++.+.|++|++||+.+++.+.+
T Consensus 118 ------------------d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~ 179 (340)
T 1got_B 118 ------------------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT 179 (340)
T ss_dssp ------------------TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ------------------CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEE
Confidence 2789999998874 444554 46789999995 3455557899999999999998888
Q ss_pred EecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhce
Q 005349 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (701)
Q Consensus 171 l~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~g 250 (701)
+..|.. ++ .-+++.. + +.
T Consensus 180 ~~~h~~---------------~v----~~~~~~~-------------~--------------~~---------------- 197 (340)
T 1got_B 180 FTGHTG---------------DV----MSLSLAP-------------D--------------TR---------------- 197 (340)
T ss_dssp ECCCSS---------------CE----EEEEECT-------------T--------------SS----------------
T ss_pred EcCCCC---------------ce----EEEEECC-------------C--------------CC----------------
Confidence 766532 11 1123321 0 00
Q ss_pred eEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEc
Q 005349 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFD 330 (701)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFS 330 (701)
.++++..||.|+|||+.+++++..+.+|..+|.+|+|+
T Consensus 198 ------------------------------------------~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~ 235 (340)
T 1got_B 198 ------------------------------------------LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235 (340)
T ss_dssp ------------------------------------------EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred ------------------------------------------EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEc
Confidence 12335678999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 331 PSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 331 PdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
|+|++|++|+.||+ |+|||+..+ ..+..+........|.+++|+|||++|++|+.||+|+|||+.
T Consensus 236 p~~~~l~s~s~d~~-v~iwd~~~~--------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 236 PNGNAFATGSDDAT-CRLFDLRAD--------------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp TTSSEEEEEETTSC-EEEEETTTT--------------EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCCEEEEEcCCCc-EEEEECCCC--------------cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence 99999999999998 999999876 445554322222359999999999999999999999999998
Q ss_pred CCCCceeecCCCCC
Q 005349 411 PLGGSVNFQPTDAN 424 (701)
Q Consensus 411 ~~g~~~~~~~H~~~ 424 (701)
.......+.+|.+.
T Consensus 301 ~~~~~~~~~~h~~~ 314 (340)
T 1got_B 301 KADRAGVLAGHDNR 314 (340)
T ss_dssp TCCEEEEEECCSSC
T ss_pred cCcEeeEeecCCCc
Confidence 87666677888543
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.93 E-value=8.4e-24 Score=231.22 Aligned_cols=237 Identities=14% Similarity=0.230 Sum_probs=186.0
Q ss_pred cEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccc
Q 005349 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (701)
Q Consensus 19 ~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~ 98 (701)
.++..+.++.++|||++. ++....+..|.+.|.++.+.|+. .+|+.++.
T Consensus 122 ~l~s~s~Dg~i~vwd~~~-~~~~~~l~~h~~~V~~v~~~~~~--------------~~l~sgs~---------------- 170 (410)
T 1vyh_C 122 VMVSASEDATIKVWDYET-GDFERTLKGHTDSVQDISFDHSG--------------KLLASCSA---------------- 170 (410)
T ss_dssp EEEEEESSSCEEEEETTT-CCCCEEECCCSSCEEEEEECTTS--------------SEEEEEET----------------
T ss_pred EEEEEeCCCeEEEEECCC-CcEEEEEeccCCcEEEEEEcCCC--------------CEEEEEeC----------------
Confidence 344445566799999987 56777788899999999997642 25655442
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecC
Q 005349 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTN 174 (701)
Q Consensus 99 ~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~ 174 (701)
+++|++||+.++++++++.. ...|.+++|+ +++|++ +.|++|++||+.+++++.++..|
T Consensus 171 -----------------D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h 233 (410)
T 1vyh_C 171 -----------------DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 233 (410)
T ss_dssp -----------------TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred -----------------CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC
Confidence 26799999999999998864 6799999996 456665 67899999999999988888765
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEc
Q 005349 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (701)
Q Consensus 175 ~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~l 254 (701)
... + +.+++.. + |.
T Consensus 234 ~~~---------------v----~~~~~~~-------------~--------------g~-------------------- 247 (410)
T 1vyh_C 234 REW---------------V----RMVRPNQ-------------D--------------GT-------------------- 247 (410)
T ss_dssp SSC---------------E----EEEEECT-------------T--------------SS--------------------
T ss_pred Ccc---------------E----EEEEECC-------------C--------------CC--------------------
Confidence 320 1 1122220 0 00
Q ss_pred CCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCC--
Q 005349 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-- 332 (701)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd-- 332 (701)
.++++..||.|+|||+.+++++..+.+|...|.+++|+|+
T Consensus 248 --------------------------------------~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 289 (410)
T 1vyh_C 248 --------------------------------------LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 289 (410)
T ss_dssp --------------------------------------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCG
T ss_pred --------------------------------------EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCccc
Confidence 1234567899999999999999999999999999999997
Q ss_pred ------------------CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCE
Q 005349 333 ------------------GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 394 (701)
Q Consensus 333 ------------------G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~ 394 (701)
|.+|++|+.||+ |+|||+.++ .++..+. |+. ..|.+++|+|+|++
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~--------------~~~~~~~-~h~-~~v~~v~~~~~g~~ 352 (410)
T 1vyh_C 290 YSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTG--------------MCLMTLV-GHD-NWVRGVLFHSGGKF 352 (410)
T ss_dssp GGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTT--------------EEEEEEE-CCS-SCEEEEEECSSSSC
T ss_pred ccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCCC--------------ceEEEEE-CCC-CcEEEEEEcCCCCE
Confidence 779999999997 999999887 6667764 544 45999999999999
Q ss_pred EEEEeCCCcEEEEecCCCCCceeecCCCCC
Q 005349 395 IMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (701)
Q Consensus 395 lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~ 424 (701)
|++++.||+|+|||+........+..|...
T Consensus 353 l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~ 382 (410)
T 1vyh_C 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHF 382 (410)
T ss_dssp EEEEETTTEEEEECCTTSCCCEEEECCSSC
T ss_pred EEEEeCCCeEEEEECCCCceEEEEcCCCCc
Confidence 999999999999999887777788888543
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.1e-23 Score=220.75 Aligned_cols=223 Identities=14% Similarity=0.192 Sum_probs=173.0
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.++..+.++.++|||++. +.....+..+...|..+.+.|+. .+|+..+.
T Consensus 93 ~~l~s~s~D~~i~lWd~~~-~~~~~~~~~~~~~~~~~~~spdg--------------~~l~~g~~--------------- 142 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLEN-GKQIKSIDAGPVDAWTLAFSPDS--------------QYLATGTH--------------- 142 (321)
T ss_dssp SEEEEEETTSEEEEEETTT-TEEEEEEECCTTCCCCEEECTTS--------------SEEEEECT---------------
T ss_pred CEEEEEeCCCcEEEEECCC-CCEEEEEeCCCccEEEEEECCCC--------------CEEEEEcC---------------
Confidence 3445556677799999987 44555556667778888887642 24443321
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEec
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t 173 (701)
+++|++||+++++.+.++.. ...|.+++|+ +++|++ +.++.|++||+.+++.+.++..
T Consensus 143 ------------------dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~ 204 (321)
T 3ow8_A 143 ------------------VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG 204 (321)
T ss_dssp ------------------TSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred ------------------CCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc
Confidence 27899999999999988876 4689999997 467776 5689999999999998888876
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEE
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~ 253 (701)
+..+ + +-|+|.. + +.
T Consensus 205 h~~~------------v-------~~l~~sp-------------d--------------~~------------------- 219 (321)
T 3ow8_A 205 HAMP------------I-------RSLTFSP-------------D--------------SQ------------------- 219 (321)
T ss_dssp CSSC------------C-------CEEEECT-------------T--------------SC-------------------
T ss_pred cCCc------------e-------eEEEEcC-------------C--------------CC-------------------
Confidence 5321 1 1233321 0 00
Q ss_pred cCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCC
Q 005349 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (701)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG 333 (701)
.++++..||.|+|||+.+++.+..+.+|...|.+++|+|+|
T Consensus 220 ---------------------------------------~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~ 260 (321)
T 3ow8_A 220 ---------------------------------------LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260 (321)
T ss_dssp ---------------------------------------EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred ---------------------------------------EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC
Confidence 12335678999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 334 ~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
++|++++.||+ |+|||+.++ .++.++. ++. ..|.+++|+||+++|++++.||+|+|||+
T Consensus 261 ~~l~s~s~D~~-v~iwd~~~~--------------~~~~~~~-~h~-~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 261 THFVSSSSDKS-VKVWDVGTR--------------TCVHTFF-DHQ-DQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SEEEEEETTSC-EEEEETTTT--------------EEEEEEC-CCS-SCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CEEEEEeCCCc-EEEEeCCCC--------------EEEEEEc-CCC-CcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999998 999999887 6777774 443 46999999999999999999999999996
No 7
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.93 E-value=1.6e-23 Score=225.92 Aligned_cols=227 Identities=15% Similarity=0.146 Sum_probs=163.7
Q ss_pred cCCeEEEEecCCCCeeEEeee--------ccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 26 RSGFQVWDVEEADNVHDLVSR--------YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 26 ~~g~qVwdv~~~~~~~elvs~--------~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
++.+++|+++...+..+.+.. ++..|++++|.|++ .+|++++++
T Consensus 103 d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg--------------~~la~as~~-------------- 154 (365)
T 4h5i_A 103 NKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG--------------TVAAIASSK-------------- 154 (365)
T ss_dssp CCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS--------------SCEEEEESC--------------
T ss_pred CCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC--------------CEEEEEECC--------------
Confidence 445899998875544444432 24458888888754 246666542
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEEeCCEEEEEECCCCceeEEEecCC
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNP 175 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~ 175 (701)
.+++|+|||+++++++.++++...|++|+|+ +++|+++.++.+.+|+..+++.+.......
T Consensus 155 -----------------~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~ 217 (365)
T 4h5i_A 155 -----------------VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFD 217 (365)
T ss_dssp -----------------SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCC
T ss_pred -----------------CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCC
Confidence 2389999999999999999999999999997 578998889999999999887655432210
Q ss_pred CccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcC
Q 005349 176 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLG 255 (701)
Q Consensus 176 ~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lG 255 (701)
. -..+ +-++|..+ +.. +++
T Consensus 218 ~-------------~~~v----~~v~fspd---------------------------g~~-----------l~~------ 236 (365)
T 4h5i_A 218 K-------------NWSL----SKINFIAD---------------------------DTV-----------LIA------ 236 (365)
T ss_dssp T-------------TEEE----EEEEEEET---------------------------TEE-----------EEE------
T ss_pred C-------------CCCE----EEEEEcCC---------------------------CCE-----------EEE------
Confidence 0 0011 12333310 110 000
Q ss_pred CccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcE----EEEeecCCCCeEEEEEcC
Q 005349 256 DLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV----IAQFRAHKSPISALCFDP 331 (701)
Q Consensus 256 d~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~----i~~~~~H~~~Is~laFSP 331 (701)
++ .+......+++||+..... ...+.+|..+|++|+|||
T Consensus 237 ------------------------~s-------------~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp 279 (365)
T 4h5i_A 237 ------------------------AS-------------LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM 279 (365)
T ss_dssp ------------------------EE-------------ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT
T ss_pred ------------------------Ee-------------cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC
Confidence 00 0011123688888876543 456789999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 332 dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
||++||+|+.||+ |+|||+.++ ..+.++.+||. ..|++|+|||||++||++|.|+||+||++.+
T Consensus 280 dg~~lasgs~D~~-V~iwd~~~~--------------~~~~~~~~gH~-~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 280 KGELAVLASNDNS-IALVKLKDL--------------SMSKIFKQAHS-FAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TSCEEEEEETTSC-EEEEETTTT--------------EEEEEETTSSS-SCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCceEEEcCCCE-EEEEECCCC--------------cEEEEecCccc-CCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999998 999999987 67777767765 4599999999999999999999999999954
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.93 E-value=3.5e-23 Score=216.40 Aligned_cols=237 Identities=14% Similarity=0.121 Sum_probs=177.8
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.++..+.++.++|||+++ +.....+..|.++|+++++.|+. .+|+.++.
T Consensus 26 ~~l~s~~~dg~v~lWd~~~-~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~s~s~--------------- 75 (304)
T 2ynn_A 26 PWVLTTLYSGRVELWNYET-QVEVRSIQVTETPVRAGKFIARK--------------NWIIVGSD--------------- 75 (304)
T ss_dssp SEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGG--------------TEEEEEET---------------
T ss_pred CEEEEEcCCCcEEEEECCC-CceeEEeeccCCcEEEEEEeCCC--------------CEEEEECC---------------
Confidence 4555666677799999987 45555666789999999998742 24554442
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCce-eEEEe
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEI-EYAIL 172 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~-~~tl~ 172 (701)
+++|++||+++++++.+++. ...|.+|+|+ +++|++ +.|++|++||+.+... ..++.
T Consensus 76 ------------------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 137 (304)
T 2ynn_A 76 ------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (304)
T ss_dssp ------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC
T ss_pred ------------------CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc
Confidence 27899999999999999975 6789999997 456666 6789999999988743 34444
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeE
Q 005349 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (701)
Q Consensus 173 t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~ 252 (701)
.|.. ++ ..++|.. . ++
T Consensus 138 ~h~~---------------~v----~~v~~~p-------------~-------------~~------------------- 153 (304)
T 2ynn_A 138 GHEH---------------FV----MCVAFNP-------------K-------------DP------------------- 153 (304)
T ss_dssp CCCS---------------CE----EEEEECT-------------T-------------CT-------------------
T ss_pred ccCC---------------cE----EEEEECC-------------C-------------CC-------------------
Confidence 4421 01 1123321 0 00
Q ss_pred EcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEee-cCCCCeEEEEEcC
Q 005349 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDP 331 (701)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-~H~~~Is~laFSP 331 (701)
..++++..||.|+|||+.+......+. .|...|.+++|+|
T Consensus 154 ---------------------------------------~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 194 (304)
T 2ynn_A 154 ---------------------------------------STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194 (304)
T ss_dssp ---------------------------------------TEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECC
T ss_pred ---------------------------------------CEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEE
Confidence 023345678999999998877665555 6678999999987
Q ss_pred --CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 332 --SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 332 --dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
++.+|+||+.||+ |+|||+.++ .++.++. |+. ..|.+++|+|++++|++++.||+|+|||+
T Consensus 195 ~~~~~~l~s~s~D~~-i~iWd~~~~--------------~~~~~~~-~h~-~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 195 LPDKPYMITASDDLT-IKIWDYQTK--------------SCVATLE-GHM-SNVSFAVFHPTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp STTCCEEEEEETTSE-EEEEETTTT--------------EEEEEEE-CCS-SCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred cCCCCEEEEEcCCCe-EEEEeCCCC--------------ccceeeC-CCC-CCEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 7889999999997 999999887 6777774 554 45999999999999999999999999999
Q ss_pred CCCCCceeecCCC
Q 005349 410 NPLGGSVNFQPTD 422 (701)
Q Consensus 410 ~~~g~~~~~~~H~ 422 (701)
.++.....+..|.
T Consensus 258 ~~~~~~~~~~~~~ 270 (304)
T 2ynn_A 258 STYKVEKTLNVGL 270 (304)
T ss_dssp TTCCEEEEECCSS
T ss_pred CCCceeeeccCCC
Confidence 9876666776663
No 9
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.92 E-value=6.4e-24 Score=228.13 Aligned_cols=234 Identities=12% Similarity=0.135 Sum_probs=163.2
Q ss_pred CcEEEEeccCCeEEEEecCCCCee--E-EeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVH--D-LVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~--e-lvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
.++|+.+.++.++|||+....... . ....|.++|.++.+.|+. .+|+.++.
T Consensus 106 ~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg--------------~~l~sgs~------------ 159 (357)
T 4g56_B 106 KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG--------------TQAVSGGK------------ 159 (357)
T ss_dssp TEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS--------------SEEEEEET------------
T ss_pred CCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC--------------CEEEEEeC------------
Confidence 677888888889999998643221 1 122588999999998753 24544432
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecC---CEEEE-EeCCEEEEEECCCCceeE
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEY 169 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~---~~LaV-a~~~~I~iwDl~t~~~~~ 169 (701)
+++|++||+++++++.+++. ...|.+|+|++ .++++ +.|++|++||+++++...
T Consensus 160 ---------------------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~ 218 (357)
T 4g56_B 160 ---------------------DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT 218 (357)
T ss_dssp ---------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC
T ss_pred ---------------------CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee
Confidence 16799999999999999975 67999999962 34554 678999999999887554
Q ss_pred EEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhc
Q 005349 170 AILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (701)
Q Consensus 170 tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~ 249 (701)
.+..... ..++ ..++|.. + .+
T Consensus 219 ~~~~~~~-------------~~~v----~~v~~sp-------------~-------------~~---------------- 239 (357)
T 4g56_B 219 RIDFCAS-------------DTIP----TSVTWHP-------------E-------------KD---------------- 239 (357)
T ss_dssp BCCCTTC-------------CSCE----EEEEECT-------------T-------------ST----------------
T ss_pred eeeeccc-------------cccc----cchhhhh-------------c-------------cc----------------
Confidence 3322100 0000 1123321 0 00
Q ss_pred eeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEE
Q 005349 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (701)
Q Consensus 250 gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laF 329 (701)
..++.+..|+.|+|||+.+++++..+.+|..+|.+|+|
T Consensus 240 ------------------------------------------~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~ 277 (357)
T 4g56_B 240 ------------------------------------------DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY 277 (357)
T ss_dssp ------------------------------------------TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEE
T ss_pred ------------------------------------------ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEE
Confidence 01233557899999999999999999999999999999
Q ss_pred cCCC-CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 005349 330 DPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLF 407 (701)
Q Consensus 330 SPdG-~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iw 407 (701)
+|+| ++||||+.||+ |+|||+.++ +.+..+ +|. ..|++|+||| |+++||+++.||+|+||
T Consensus 278 sp~~~~~lasgs~D~~-i~iwd~~~~--------------~~~~~~--~H~-~~V~~vafsP~d~~~l~s~s~Dg~v~iW 339 (357)
T 4g56_B 278 SYHSSPFLASISEDCT-VAVLDADFS--------------EVFRDL--SHR-DFVTGVAWSPLDHSKFTTVGWDHKVLHH 339 (357)
T ss_dssp CSSSSCCEEEEETTSC-EEEECTTSC--------------EEEEEC--CCS-SCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred cCCCCCEEEEEeCCCE-EEEEECCCC--------------cEeEEC--CCC-CCEEEEEEeCCCCCEEEEEcCCCeEEEE
Confidence 9987 68999999998 999999876 444443 543 4699999998 89999999999999999
Q ss_pred ecCCCCCcee
Q 005349 408 AINPLGGSVN 417 (701)
Q Consensus 408 dl~~~g~~~~ 417 (701)
++...+....
T Consensus 340 ~~~~~~~~~~ 349 (357)
T 4g56_B 340 HLPSEGRTEN 349 (357)
T ss_dssp ECC-------
T ss_pred ECCCCCcccc
Confidence 9987655443
No 10
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.92 E-value=2.8e-23 Score=227.05 Aligned_cols=243 Identities=12% Similarity=0.209 Sum_probs=176.8
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.++..+.++.++|||+.. .++...+..|.+.|.++.+.|+. .+|+.++.
T Consensus 163 ~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~V~~v~~~p~~--------------~~l~s~s~--------------- 212 (410)
T 1vyh_C 163 KLLASCSADMTIKLWDFQG-FECIRTMHGHDHNVSSVSIMPNG--------------DHIVSASR--------------- 212 (410)
T ss_dssp SEEEEEETTSCCCEEETTS-SCEEECCCCCSSCEEEEEECSSS--------------SEEEEEET---------------
T ss_pred CEEEEEeCCCeEEEEeCCC-CceeEEEcCCCCCEEEEEEeCCC--------------CEEEEEeC---------------
Confidence 3444555667799999986 45666677899999999998743 24443332
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEec
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t 173 (701)
+++|++||+++++++.++.. ...|..+.++ +++|++ +.|++|++||+.+.++..++..
T Consensus 213 ------------------D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~ 274 (410)
T 1vyh_C 213 ------------------DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274 (410)
T ss_dssp ------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ------------------CCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecC
Confidence 27899999999999999875 6689999996 466766 5689999999999998888876
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEE
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~ 253 (701)
+... + ..++|........ +. ...+..
T Consensus 275 h~~~---------------v----~~~~~~~~~~~~~---------~~--------~~~~~~------------------ 300 (410)
T 1vyh_C 275 HRHV---------------V----ECISWAPESSYSS---------IS--------EATGSE------------------ 300 (410)
T ss_dssp CSSC---------------E----EEEEECCSCGGGG---------GG--------GCCSCC------------------
T ss_pred CCce---------------E----EEEEEcCcccccc---------hh--------hhcccc------------------
Confidence 6321 1 1234432100000 00 000000
Q ss_pred cCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCC
Q 005349 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (701)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG 333 (701)
.... +.....++++..||.|+|||+.+++++..+.+|...|.+|+|+|+|
T Consensus 301 -------------------------~~~~-----~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g 350 (410)
T 1vyh_C 301 -------------------------TKKS-----GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350 (410)
T ss_dssp -------------------------------------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred -------------------------cccc-----CCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCC
Confidence 0000 0001235567789999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 334 ~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
++|+||+.||+ |+|||+.++ .++..+. ++. ..|.+++|+|++++||+||.||+|+||++
T Consensus 351 ~~l~s~s~D~~-i~vwd~~~~--------------~~~~~~~-~h~-~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 351 KFILSCADDKT-LRVWDYKNK--------------RCMKTLN-AHE-HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEETTTE-EEEECCTTS--------------CCCEEEE-CCS-SCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CEEEEEeCCCe-EEEEECCCC--------------ceEEEEc-CCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999997 999999876 4455553 443 45999999999999999999999999986
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.92 E-value=2.9e-22 Score=211.14 Aligned_cols=247 Identities=11% Similarity=0.151 Sum_probs=165.2
Q ss_pred CcEEEEeccCCeEEEEecCCCC----eeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccC
Q 005349 18 RRVLLLGYRSGFQVWDVEEADN----VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~----~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d 93 (701)
..++..+.++.+++||+..... ....+..|.+.|.++.+.|+. .+|+.++.
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg--------------~~l~s~s~----------- 85 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG--------------AYALSASW----------- 85 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS--------------SEEEEEET-----------
T ss_pred cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC--------------CEEEEEeC-----------
Confidence 3455566677799999975322 223456789999999998743 24544432
Q ss_pred CcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeE
Q 005349 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEY 169 (701)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~ 169 (701)
+++|++||+++++++.++.. ...|.+++|+ +++|++ +.|++|++||+.. +++.
T Consensus 86 ----------------------D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~ 142 (319)
T 3frx_A 86 ----------------------DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLA 142 (319)
T ss_dssp ----------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEE
T ss_pred ----------------------CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEE
Confidence 27899999999999999874 6799999997 456665 6789999999964 5566
Q ss_pred EEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhc
Q 005349 170 AILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (701)
Q Consensus 170 tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~ 249 (701)
++..|... + .-+++.... .. .
T Consensus 143 ~~~~h~~~---------------v----~~~~~~~~~-------------~~---------~------------------ 163 (319)
T 3frx_A 143 TLLGHNDW---------------V----SQVRVVPNE-------------KA---------D------------------ 163 (319)
T ss_dssp EECCCSSC---------------E----EEEEECCC--------------------------------------------
T ss_pred EEeccCCc---------------E----EEEEEccCC-------------CC---------C------------------
Confidence 66554210 1 012222100 00 0
Q ss_pred eeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEE
Q 005349 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (701)
Q Consensus 250 gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laF 329 (701)
. . ...++++..||.|++||+.+.+....+.+|..+|.+++|
T Consensus 164 --------------------------------~----~---~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 204 (319)
T 3frx_A 164 --------------------------------D----D---SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA 204 (319)
T ss_dssp -----------------------------------------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEE
T ss_pred --------------------------------C----C---ccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEE
Confidence 0 0 002344667899999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEEcCCCCC-----CCCC----ccCC--------CCceeEEEEE---------ecc---C--
Q 005349 330 DPSGILLVTASVQGHNINIFKIIPGIL-----GTSS----ACDA--------GTSYVHLYRL---------QRG---L-- 378 (701)
Q Consensus 330 SPdG~lLaTaS~dGt~I~Iwdl~~~~~-----~~~s----~~~~--------~~~~~~l~~l---------~rG---~-- 378 (701)
+|+|++||+++.||+ |+|||+.++.. .... .... .....+++.+ +.. .
T Consensus 205 sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 283 (319)
T 3frx_A 205 SPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSK 283 (319)
T ss_dssp CTTSSEEEEEETTCE-EEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCG
T ss_pred cCCCCEEEEEeCCCe-EEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCcccccccc
Confidence 999999999999997 99999987510 0000 0000 0011122221 110 0
Q ss_pred -CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 379 -TNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 379 -~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
....|.+++|||||++|++|+.||+|+||++.+
T Consensus 284 ~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp GGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred CcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 122378888999999999999999999998864
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.91 E-value=5.8e-23 Score=220.52 Aligned_cols=240 Identities=11% Similarity=0.098 Sum_probs=170.9
Q ss_pred CCcEEEEeccCCeEEEEecC----------CCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCc
Q 005349 17 TRRVLLLGYRSGFQVWDVEE----------ADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRS 86 (701)
Q Consensus 17 ~~~vL~~g~~~g~qVwdv~~----------~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~ 86 (701)
..++|+.+.+..+++||... ........-.++.+|.++++.|+. .|+.++.
T Consensus 41 dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~---------------~l~~~s~---- 101 (344)
T 4gqb_B 41 DGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER---------------GILVASD---- 101 (344)
T ss_dssp TSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT---------------EEEEEET----
T ss_pred CCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC---------------eEEEEEC----
Confidence 36778888888888887421 011111222357789999988631 2333332
Q ss_pred CCccccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe-----cCCCEEEEEec--CCEEEE-EeCCEEE
Q 005349 87 CGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-----FRSPIYSVRCS--SRVVAI-CQAAQVH 158 (701)
Q Consensus 87 ~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~-----f~s~V~sV~~s--~~~LaV-a~~~~I~ 158 (701)
+++|+|||+++++++.+++ +...|.+|+|+ +++|++ +.|++|+
T Consensus 102 -----------------------------dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~ 152 (344)
T 4gqb_B 102 -----------------------------SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152 (344)
T ss_dssp -----------------------------TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred -----------------------------CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 2789999999998776654 46789999996 567776 5688999
Q ss_pred EEECCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceee
Q 005349 159 CFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAH 238 (701)
Q Consensus 159 iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~ 238 (701)
+||+.++++++++..|... + ..++|.. + +.
T Consensus 153 iwd~~~~~~~~~~~~h~~~---------------V----~~~~~~~-------------~--------------~~---- 182 (344)
T 4gqb_B 153 VWDLAQQVVLSSYRAHAAQ---------------V----TCVAASP-------------H--------------KD---- 182 (344)
T ss_dssp EEETTTTEEEEEECCCSSC---------------E----EEEEECS-------------S--------------CT----
T ss_pred EEECCCCcEEEEEcCcCCc---------------e----EEEEecC-------------C--------------CC----
Confidence 9999999999888776321 1 1123321 0 00
Q ss_pred hhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEee
Q 005349 239 YAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR 318 (701)
Q Consensus 239 ~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~ 318 (701)
..++++..||+|+|||+.+++++..+.
T Consensus 183 -----------------------------------------------------~~l~s~s~D~~v~iwd~~~~~~~~~~~ 209 (344)
T 4gqb_B 183 -----------------------------------------------------SVFLSCSEDNRILLWDTRCPKPASQIG 209 (344)
T ss_dssp -----------------------------------------------------TEEEEEETTSCEEEEETTSSSCEEECC
T ss_pred -----------------------------------------------------Cceeeeccccccccccccccceeeeee
Confidence 012345678999999999999988886
Q ss_pred --cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCC-CE
Q 005349 319 --AHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS-NW 394 (701)
Q Consensus 319 --~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg-~~ 394 (701)
.|...+.+++|+| ++.+||+|+.||+ |+|||+.++ .+++++. ++. ..|.+|+|+||+ ++
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~~--------------~~~~~~~-~h~-~~v~~v~fsp~g~~~ 272 (344)
T 4gqb_B 210 CSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKST--------------SCVLSSA-VHS-QCVTGLVFSPHSVPF 272 (344)
T ss_dssp ----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC----------------CCEEEE-CCS-SCEEEEEECSSSSCC
T ss_pred cceeeccceeeeecCCCCcceEEeccCCc-EEEEECCCC--------------cEEEEEc-CCC-CCEEEEEEccCCCeE
Confidence 5567899999999 5679999999997 999999876 4556663 544 459999999998 58
Q ss_pred EEEEeCCCcEEEEecCCCCCceeecCCCCCc
Q 005349 395 IMISSSRGTSHLFAINPLGGSVNFQPTDANF 425 (701)
Q Consensus 395 lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~~ 425 (701)
||++|.|++|+|||+... ....+.+|.+.+
T Consensus 273 lasgs~D~~i~vwd~~~~-~~~~~~~H~~~V 302 (344)
T 4gqb_B 273 LASLSEDCSLAVLDSSLS-ELFRSQAHRDFV 302 (344)
T ss_dssp EEEEETTSCEEEECTTCC-EEEEECCCSSCE
T ss_pred EEEEeCCCeEEEEECCCC-cEEEEcCCCCCE
Confidence 999999999999999764 455677886443
No 13
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.91 E-value=1.9e-22 Score=210.90 Aligned_cols=219 Identities=11% Similarity=0.193 Sum_probs=168.8
Q ss_pred CeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcE
Q 005349 39 NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTV 118 (701)
Q Consensus 39 ~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~t 118 (701)
+....+..|.+.|.++++.|+. ++|+.++. +++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~--------------~~l~s~~~---------------------------------dg~ 36 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTE--------------PWVLTTLY---------------------------------SGR 36 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSS--------------SEEEEEET---------------------------------TSE
T ss_pred eeEEeecCCCCceEEEEECCCC--------------CEEEEEcC---------------------------------CCc
Confidence 3566788899999999998753 35654442 278
Q ss_pred EEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccceee
Q 005349 119 VHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLA 194 (701)
Q Consensus 119 VriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piA 194 (701)
|+|||++++++++++.. ..+|.+++|+ +++|++ +.|++|++||+.+++++.++..|... +
T Consensus 37 v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~---------------v- 100 (304)
T 2ynn_A 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY---------------I- 100 (304)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC---------------E-
T ss_pred EEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc---------------E-
Confidence 99999999999999986 5689999996 566766 66889999999999999888876421 1
Q ss_pred eccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCCCC
Q 005349 195 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQ 274 (701)
Q Consensus 195 ls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~ 274 (701)
+.|++.. + +
T Consensus 101 ---~~~~~~~-------------~--------------~----------------------------------------- 109 (304)
T 2ynn_A 101 ---RSIAVHP-------------T--------------K----------------------------------------- 109 (304)
T ss_dssp ---EEEEECS-------------S--------------S-----------------------------------------
T ss_pred ---EEEEEcC-------------C--------------C-----------------------------------------
Confidence 1233321 0 0
Q ss_pred CccccccCCCCCCCcccccccccCCCCeEEEEECCCC-cEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcC
Q 005349 275 NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKII 352 (701)
Q Consensus 275 ~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~ 352 (701)
..++++..||+|+|||+.++ .....+.+|...|.+++|+| ++.+||||+.||+ |+|||+.
T Consensus 110 -----------------~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~-v~iwd~~ 171 (304)
T 2ynn_A 110 -----------------PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT-VKVWSLG 171 (304)
T ss_dssp -----------------SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE-EEEEETT
T ss_pred -----------------CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe-EEEEECC
Confidence 01234567899999999987 55678899999999999999 6899999999997 9999997
Q ss_pred CCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC--CCCEEEEEeCCCcEEEEecCCCCCceeecCCCCC
Q 005349 353 PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (701)
Q Consensus 353 ~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp--Dg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~ 424 (701)
.. .....+..++ ...|..++|+| |+++|++++.|++|+|||+........+.+|...
T Consensus 172 ~~--------------~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~ 230 (304)
T 2ynn_A 172 QS--------------TPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230 (304)
T ss_dssp CS--------------SCSEEEECCC-TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CC--------------CccceeccCC-cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCC
Confidence 65 2233444443 23588899986 8899999999999999999987667778888544
No 14
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.91 E-value=5.7e-22 Score=212.40 Aligned_cols=243 Identities=12% Similarity=0.108 Sum_probs=178.2
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.++..+.++.++|||+.+ ++....+..+...|.++.+.|+. .+|+..+.
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~~~~~v~~~~~sp~g--------------~~lasg~~--------------- 126 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFT-TNKEHAVTMPCTWVMACAYAPSG--------------CAIACGGL--------------- 126 (354)
T ss_dssp SEEEEEETTSEEEEEETTT-CCEEEEEECSSSCCCEEEECTTS--------------SEEEEEST---------------
T ss_pred CEEEEEeCCCeEEEEECCC-CCcceEEecCCCCEEEEEECCCC--------------CEEEEeeC---------------
Confidence 4556666677799999987 45666666788889999988753 23443321
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCC------cEEEEEe-cCCCEEEEEecC--CEEE-EEeCCEEEEEECCCCce
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQ------SYVHMLK-FRSPIYSVRCSS--RVVA-ICQAAQVHCFDAATLEI 167 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg------~~v~tL~-f~s~V~sV~~s~--~~La-Va~~~~I~iwDl~t~~~ 167 (701)
++++++|++... .....+. +...|.++.|++ +.|+ .+.|++|++||+.+++.
T Consensus 127 ------------------d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~ 188 (354)
T 2pbi_B 127 ------------------DNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL 188 (354)
T ss_dssp ------------------TSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred ------------------CCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE
Confidence 278999998754 2344444 467899999963 4454 47799999999999998
Q ss_pred eEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhch
Q 005349 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (701)
Q Consensus 168 ~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~l 247 (701)
+.++..|... + ..++++.++ .|
T Consensus 189 ~~~~~~h~~~---------------v----~~~~~~~~~-------------------------~g-------------- 210 (354)
T 2pbi_B 189 LQSFHGHGAD---------------V----LCLDLAPSE-------------------------TG-------------- 210 (354)
T ss_dssp EEEEECCSSC---------------E----EEEEECCCS-------------------------SC--------------
T ss_pred EEEEcCCCCC---------------e----EEEEEEeCC-------------------------CC--------------
Confidence 8888766321 1 012222100 00
Q ss_pred hceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEE
Q 005349 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISAL 327 (701)
Q Consensus 248 a~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~l 327 (701)
..++++..||.|++||+.+++++..+.+|..+|.++
T Consensus 211 --------------------------------------------~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v 246 (354)
T 2pbi_B 211 --------------------------------------------NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV 246 (354)
T ss_dssp --------------------------------------------CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred --------------------------------------------CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEE
Confidence 023345678999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005349 328 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (701)
Q Consensus 328 aFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iw 407 (701)
+|+|+|.+||||+.||+ |+|||+... ..+..+........+.+++|+|||++|++++.|++|+||
T Consensus 247 ~~~p~~~~l~s~s~D~~-v~lwd~~~~--------------~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vw 311 (354)
T 2pbi_B 247 RYYPSGDAFASGSDDAT-CRLYDLRAD--------------REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311 (354)
T ss_dssp EECTTSSEEEEEETTSC-EEEEETTTT--------------EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEeCCCCEEEEEeCCCe-EEEEECCCC--------------cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEE
Confidence 99999999999999998 999999876 444444322222348999999999999999999999999
Q ss_pred ecCCCCCceeecCCCCCc
Q 005349 408 AINPLGGSVNFQPTDANF 425 (701)
Q Consensus 408 dl~~~g~~~~~~~H~~~~ 425 (701)
|+.+......+.+|.+.+
T Consensus 312 d~~~~~~~~~l~~h~~~v 329 (354)
T 2pbi_B 312 DVLKGSRVSILFGHENRV 329 (354)
T ss_dssp ETTTCSEEEEECCCSSCE
T ss_pred ECCCCceEEEEECCCCcE
Confidence 998766556777775433
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.91 E-value=3.9e-22 Score=211.78 Aligned_cols=222 Identities=12% Similarity=0.158 Sum_probs=166.9
Q ss_pred CcEEEEeccCCeEEEEecCCC---CeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 18 RRVLLLGYRSGFQVWDVEEAD---NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~---~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
+.++..|.++.++|||+.... .....+..|.+.|.++.+.++. .++.++.
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------------~l~s~s~------------ 162 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---------------QIVTSSG------------ 162 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT---------------EEEEEET------------
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC---------------cEEEEEC------------
Confidence 445555667779999997642 2334455788999999987631 2333321
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEE
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYA 170 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~t 170 (701)
+++|++||+++++++.++.. ...|.+++|+ +++|++ +.|++|++||+.++++..+
T Consensus 163 ---------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~ 221 (340)
T 1got_B 163 ---------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221 (340)
T ss_dssp ---------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred ---------------------CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE
Confidence 16799999999999999874 6799999997 456666 5689999999999998888
Q ss_pred EecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhce
Q 005349 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (701)
Q Consensus 171 l~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~g 250 (701)
+..|... + .-+++.. + +.
T Consensus 222 ~~~h~~~---------------v----~~v~~~p-------------~--------------~~---------------- 239 (340)
T 1got_B 222 FTGHESD---------------I----NAICFFP-------------N--------------GN---------------- 239 (340)
T ss_dssp ECCCSSC---------------E----EEEEECT-------------T--------------SS----------------
T ss_pred EcCCcCC---------------E----EEEEEcC-------------C--------------CC----------------
Confidence 7665320 1 1123321 0 00
Q ss_pred eEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeec--CCCCeEEEE
Q 005349 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA--HKSPISALC 328 (701)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~--H~~~Is~la 328 (701)
.++++..||.|+|||+.+++.+..+.. +...|.+++
T Consensus 240 ------------------------------------------~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 240 ------------------------------------------AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ------------------------------------------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred ------------------------------------------EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 123456789999999999988877763 345899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005349 329 FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 329 FSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwd 408 (701)
|+|+|++|++|+.||+ |+|||+..+ ..+..+ .|+. ..|.+++|+|||++||+|+.|++|+|||
T Consensus 278 ~s~~g~~l~~g~~d~~-i~vwd~~~~--------------~~~~~~-~~h~-~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 278 FSKSGRLLLAGYDDFN-CNVWDALKA--------------DRAGVL-AGHD-NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECTTSSEEEEEETTSE-EEEEETTTC--------------CEEEEE-ECCS-SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCCEEEEECCCCe-EEEEEcccC--------------cEeeEe-ecCC-CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999997 999999876 455566 4554 4699999999999999999999999996
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.91 E-value=5.7e-22 Score=214.99 Aligned_cols=251 Identities=14% Similarity=0.185 Sum_probs=172.7
Q ss_pred CCcEEEEeccCCeEEEEecCCCCeeEEeeecc------------------CCEEEEEEeeCCCCCccccCccccCCCEEE
Q 005349 17 TRRVLLLGYRSGFQVWDVEEADNVHDLVSRYD------------------GPVSFMQMLPRPITSKRSRDKFAEVRPLLV 78 (701)
Q Consensus 17 ~~~vL~~g~~~g~qVwdv~~~~~~~elvs~~d------------------G~V~~l~~lp~p~~~~~~~d~f~~~rplla 78 (701)
..+.|+.|.++.++||++.+ ++....+..+. ..|+++.+.|+. .+|+
T Consensus 75 dg~~la~g~~~~v~i~~~~~-g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg--------------~~l~ 139 (393)
T 1erj_A 75 DGEYLATGCNKTTQVYRVSD-GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG--------------KFLA 139 (393)
T ss_dssp TSSEEEEECBSCEEEEETTT-CCEEEEECC-----------------CCCCBEEEEEECTTS--------------SEEE
T ss_pred CCCEEEEEcCCcEEEEEecC-CCEEEEecCccccccccccccccccCCCceeEEEEEECCCC--------------CEEE
Confidence 46788888899999999987 44444443222 136666665532 2344
Q ss_pred EEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe-cCCCEEEEEec--CCEEEE-EeC
Q 005349 79 FCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQA 154 (701)
Q Consensus 79 vv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~-f~s~V~sV~~s--~~~LaV-a~~ 154 (701)
.++. +++|++||+++++++.++. +...|.+++|+ ++.|++ +.|
T Consensus 140 s~~~---------------------------------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d 186 (393)
T 1erj_A 140 TGAE---------------------------------DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186 (393)
T ss_dssp EEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEcC---------------------------------CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCC
Confidence 3332 2679999999999999987 46789999996 456665 678
Q ss_pred CEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCc
Q 005349 155 AQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGS 234 (701)
Q Consensus 155 ~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~ 234 (701)
++|++||+.++++..++.... . + ..+++.. . ++.
T Consensus 187 ~~v~iwd~~~~~~~~~~~~~~-------------~---v----~~~~~~~-------------~-------------~~~ 220 (393)
T 1erj_A 187 RTVRIWDLRTGQCSLTLSIED-------------G---V----TTVAVSP-------------G-------------DGK 220 (393)
T ss_dssp SEEEEEETTTTEEEEEEECSS-------------C---E----EEEEECS-------------T-------------TCC
T ss_pred CcEEEEECCCCeeEEEEEcCC-------------C---c----EEEEEEC-------------C-------------CCC
Confidence 999999999998776664321 0 0 1122220 0 000
Q ss_pred ceeehhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEE
Q 005349 235 RVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI 314 (701)
Q Consensus 235 ~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i 314 (701)
.++++..||.|+|||+.+++.+
T Consensus 221 ----------------------------------------------------------~l~~~s~d~~v~iwd~~~~~~~ 242 (393)
T 1erj_A 221 ----------------------------------------------------------YIAAGSLDRAVRVWDSETGFLV 242 (393)
T ss_dssp ----------------------------------------------------------EEEEEETTSCEEEEETTTCCEE
T ss_pred ----------------------------------------------------------EEEEEcCCCcEEEEECCCCcEE
Confidence 1233557899999999999888
Q ss_pred EEe-------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEE
Q 005349 315 AQF-------RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDIS 387 (701)
Q Consensus 315 ~~~-------~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~ia 387 (701)
..+ .+|...|.+|+|+|+|++|++++.||+ |+|||+......... .......+...+ .|+. ..|.+++
T Consensus 243 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~~~~~~~--~~~~~~~~~~~~-~~h~-~~v~~~~ 317 (393)
T 1erj_A 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKSDS--KTPNSGTCEVTY-IGHK-DFVLSVA 317 (393)
T ss_dssp EEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC-----------------CEEEEE-ECCS-SCEEEEE
T ss_pred EeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCCCCcccc--cCCCCCcceEEE-eccc-CcEEEEE
Confidence 777 589999999999999999999999997 999999764110000 000011233444 3543 3599999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCC
Q 005349 388 FSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (701)
Q Consensus 388 FSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~ 424 (701)
|+|++++|++++.|++|+|||+........+++|.+.
T Consensus 318 ~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~ 354 (393)
T 1erj_A 318 TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 354 (393)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCC
Confidence 9999999999999999999999887666677888543
No 17
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.91 E-value=1.1e-21 Score=214.03 Aligned_cols=274 Identities=14% Similarity=0.208 Sum_probs=184.5
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEee--eccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs--~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~ 95 (701)
..+|++|.++.++|||+++ +++.+++. .|.+.|.++++.|+. .+||+++.
T Consensus 116 ~n~lAvgld~tV~lWd~~t-g~~~~~~~~~~~~~~V~sv~fspdg--------------~~lasgs~------------- 167 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEG--------------NYLAVGTS------------- 167 (420)
T ss_dssp TSEEEEEETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTS--------------SEEEEEET-------------
T ss_pred CCEEEEEeCCEEEEEECCC-CCEEEEEEecCCCCcEEEEEECCCC--------------CEEEEEEC-------------
Confidence 5689999999999999987 67777776 456789999998753 25655442
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecCCEEEE-EeCCEEEEEECCCCc-eeEEEe
Q 005349 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLE-IEYAIL 172 (701)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t~~-~~~tl~ 172 (701)
+++|+|||++++++++++.. ...|.++.+++++|++ +.++.|++||..+.. .+.++.
T Consensus 168 --------------------Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~ 227 (420)
T 4gga_A 168 --------------------SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 227 (420)
T ss_dssp --------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred --------------------CCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEec
Confidence 16799999999999999875 6789999999998887 568899999998754 455666
Q ss_pred cCCCccCCCCCCCCCcccceeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhce
Q 005349 173 TNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (701)
Q Consensus 173 t~~~~~~~~~~~~~~~~~~piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~g 250 (701)
.+... ...+...+ ++|+..+.+ ..+..+.....+....-
T Consensus 228 ~h~~~------------~~~~~~~~~g~~l~s~~~D---------------------------~~v~i~~~~~~~~~~~~ 268 (420)
T 4gga_A 228 GHSQE------------VCGLRWAPDGRHLASGGND---------------------------NLVNVWPSAPGEGGWVP 268 (420)
T ss_dssp CCSSC------------EEEEEECTTSSEEEEEETT---------------------------SCEEEEESSCCSSCSCC
T ss_pred ccccc------------eeeeeecCCCCeeeeeecc---------------------------ccceEEeecccccccee
Confidence 55321 11122222 445544321 11111100000000000
Q ss_pred eEEc-CCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEE
Q 005349 251 IVNL-GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (701)
Q Consensus 251 l~~l-Gd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laF 329 (701)
+... +..+ .+ .+..+.|.+. ... ....+..|++|+|||+.+++++..+..|. .|.++.|
T Consensus 269 ~~~~~~~~~--~V--~~~~~~p~~~-------------~~l--a~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~ 328 (420)
T 4gga_A 269 LQTFTQHQG--AV--KAVAWCPWQS-------------NVL--ATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILW 328 (420)
T ss_dssp SEEECCCSS--CE--EEEEECTTCT-------------TEE--EEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEE
T ss_pred eeeecccCC--ce--eeeeeCCCcc-------------cEE--EEEeecCCCEEEEEeCCccccceeecccc-ceeeeee
Confidence 0000 0000 00 0000011110 000 01235678999999999999999888775 7899999
Q ss_pred cCCCCEEEEEe--CCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005349 330 DPSGILLVTAS--VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (701)
Q Consensus 330 SPdG~lLaTaS--~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iw 407 (701)
+|++..|++++ .||+ |+|||+.++ .++.+| +||. ..|.+|+|||||++||+|+.|++|+||
T Consensus 329 ~~~~~~lv~~sg~~d~~-I~iwd~~~~--------------~~v~~l-~gH~-~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 329 SPHYKELISGHGFAQNQ-LVIWKYPTM--------------AKVAEL-KGHT-SRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp ETTTTEEEEEECTTTCC-EEEEETTTC--------------CEEEEE-CCCS-SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred cCCCCeEEEEEecCCCE-EEEEECCCC--------------cEEEEE-cCCC-CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 99999999876 6887 999999887 677777 4765 469999999999999999999999999
Q ss_pred ecCCCCCc
Q 005349 408 AINPLGGS 415 (701)
Q Consensus 408 dl~~~g~~ 415 (701)
|+......
T Consensus 392 dv~~~~~~ 399 (420)
T 4gga_A 392 RCFELDPA 399 (420)
T ss_dssp CCSCSSCC
T ss_pred ECCCCCcc
Confidence 99765433
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.91 E-value=3.6e-22 Score=229.65 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=88.9
Q ss_pred cccccCCCCeEEEEECCCCcE--EEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeE
Q 005349 293 HFPDADNVGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~--i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~ 370 (701)
.++++..||+|+|||+.++.. +.. .+|...|.+|+|||||++||+++.|++ |++||+.+. ...
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~-v~~w~~~~~-------------~~~ 526 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANN-------------FEL 526 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGT-------------TEE
T ss_pred EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCC-EEEEEcCCC-------------Cce
Confidence 456778899999999987653 333 689999999999999999999999998 899999762 022
Q ss_pred EEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCce--eecCC
Q 005349 371 LYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV--NFQPT 421 (701)
Q Consensus 371 l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~--~~~~H 421 (701)
+.....+.+...|.+++|||||++||++|.|++|+||+++...... .+.+|
T Consensus 527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h 579 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH 579 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS
T ss_pred eeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccC
Confidence 2221122234569999999999999999999999999998755332 34555
No 19
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.90 E-value=6.9e-22 Score=205.91 Aligned_cols=247 Identities=14% Similarity=0.193 Sum_probs=166.5
Q ss_pred CcEEEEeccCCeEEEEecCC-CCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGYRSGFQVWDVEEA-DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~-~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
+.++..+.++.++|||++.. ......+..|.++|.++.+.|.. ...+|+.++.
T Consensus 22 ~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~------------~g~~l~s~s~-------------- 75 (297)
T 2pm7_B 22 KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK------------FGTILASCSY-------------- 75 (297)
T ss_dssp SEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG------------GCSEEEEEET--------------
T ss_pred CEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC------------cCCEEEEEcC--------------
Confidence 45666667778999999752 24555667899999999987521 0125554442
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCc--EEEEEe-cCCCEEEEEecC----CEEEE-EeCCEEEEEECCCCce-
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCSS----RVVAI-CQAAQVHCFDAATLEI- 167 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~--~v~tL~-f~s~V~sV~~s~----~~LaV-a~~~~I~iwDl~t~~~- 167 (701)
+++|+|||+++++ .+.++. +...|.+|+|++ ++|++ +.|++|++||+.+...
T Consensus 76 -------------------D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~ 136 (297)
T 2pm7_B 76 -------------------DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT 136 (297)
T ss_dssp -------------------TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB
T ss_pred -------------------CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce
Confidence 2789999999885 555665 467899999964 46666 6789999999987632
Q ss_pred -eEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhc
Q 005349 168 -EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (701)
Q Consensus 168 -~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~ 246 (701)
...+..|.. .+. -+++.. ..... .
T Consensus 137 ~~~~~~~h~~------------~v~-------~~~~~p-------------~~~~~---------~-------------- 161 (297)
T 2pm7_B 137 SPIIIDAHAI------------GVN-------SASWAP-------------ATIEE---------D-------------- 161 (297)
T ss_dssp CCEEEECCSS------------CEE-------EEEECC-------------CC---------------------------
T ss_pred eeeeeecccC------------ccc-------eEeecC-------------Ccccc---------c--------------
Confidence 234444421 111 123321 00000 0
Q ss_pred hhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc----EEEEeecCCC
Q 005349 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHKS 322 (701)
Q Consensus 247 la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~----~i~~~~~H~~ 322 (701)
+. + . ... ....++++..||+|+|||+.+++ .+..|++|..
T Consensus 162 --------~~-~---------------~-----~~~-------~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~ 205 (297)
T 2pm7_B 162 --------GE-H---------------N-----GTK-------ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205 (297)
T ss_dssp --------------------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred --------cc-C---------------C-----CCC-------CcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC
Confidence 00 0 0 000 01134567789999999998765 6778999999
Q ss_pred CeEEEEEcCCC---CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe-ccCCcccEEEEEEcCCCCEEEEE
Q 005349 323 PISALCFDPSG---ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RGLTNAVIQDISFSDDSNWIMIS 398 (701)
Q Consensus 323 ~Is~laFSPdG---~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~-rG~~~a~I~~iaFSpDg~~lAsg 398 (701)
+|.+|+|+|++ .+|||++.||+ |+|||+.... + . .....+. .++ ...|.+++|+|||++||++
T Consensus 206 ~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~~~~~-~---------~-~~~~~~~~~~~-~~~v~~~~~s~~g~~las~ 272 (297)
T 2pm7_B 206 WVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQDNEQ-G---------P-WKKTLLKEEKF-PDVLWRASWSLSGNVLALS 272 (297)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSC-EEEEEESSTT-S---------C-CEEEESSSSCC-SSCEEEEEECSSSCCEEEE
T ss_pred ceEEEEECCCCCCceEEEEEECCCc-EEEEEeCCCC-C---------c-cceeeeecccC-CCcEEEEEECCCCCEEEEE
Confidence 99999999995 89999999998 8999997641 0 0 1111221 222 3459999999999999999
Q ss_pred eCCCcEEEEecCCCC
Q 005349 399 SSRGTSHLFAINPLG 413 (701)
Q Consensus 399 S~dgTI~Iwdl~~~g 413 (701)
+.|++|+||+....|
T Consensus 273 ~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 273 GGDNKVTLWKENLEG 287 (297)
T ss_dssp ETTSCEEEEEECTTS
T ss_pred cCCCcEEEEEECCCC
Confidence 999999999987543
No 20
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.90 E-value=1.5e-21 Score=211.63 Aligned_cols=233 Identities=12% Similarity=0.166 Sum_probs=169.4
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.++..+.++.++|||++. +.....+..|.+.|.++.+.|+. .+|+.++.
T Consensus 136 ~~l~s~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~p~~--------------~~l~s~s~--------------- 185 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIEN-RKIVMILQGHEQDIYSLDYFPSG--------------DKLVSGSG--------------- 185 (393)
T ss_dssp SEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTS--------------SEEEEEET---------------
T ss_pred CEEEEEcCCCeEEEEECCC-CcEEEEEccCCCCEEEEEEcCCC--------------CEEEEecC---------------
Confidence 3444455566799999987 56666777899999999998742 24544332
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec---CCEEEE-EeCCEEEEEECCCCceeEEEec
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS---SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s---~~~LaV-a~~~~I~iwDl~t~~~~~tl~t 173 (701)
+++|++||+++++++.++.+...|..++++ +++|++ +.++.|++||+.+++.+..+..
T Consensus 186 ------------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~ 247 (393)
T 1erj_A 186 ------------------DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247 (393)
T ss_dssp ------------------TSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-
T ss_pred ------------------CCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc
Confidence 278999999999999999999999999996 367776 5689999999999887766632
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEE
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~ 253 (701)
.... ..+ ...++ .-++|.
T Consensus 248 ~~~~--~~~------h~~~v----~~v~~~-------------------------------------------------- 265 (393)
T 1erj_A 248 ENES--GTG------HKDSV----YSVVFT-------------------------------------------------- 265 (393)
T ss_dssp -------CC------CSSCE----EEEEEC--------------------------------------------------
T ss_pred cccC--CCC------CCCCE----EEEEEC--------------------------------------------------
Confidence 1100 000 00001 012221
Q ss_pred cCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCC------------CcEEEEeecCC
Q 005349 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS------------KNVIAQFRAHK 321 (701)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s------------~~~i~~~~~H~ 321 (701)
|++ ..++++..||.|+|||+.+ +.+...+.+|.
T Consensus 266 -----------------~~g------------------~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~ 310 (393)
T 1erj_A 266 -----------------RDG------------------QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 310 (393)
T ss_dssp -----------------TTS------------------SEEEEEETTSEEEEEEC---------------CEEEEEECCS
T ss_pred -----------------CCC------------------CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEeccc
Confidence 000 1234456789999999975 34567888999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC------CCCEE
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD------DSNWI 395 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp------Dg~~l 395 (701)
..|.+++|+|+|.+|++++.||+ |+|||+.++ ..+..+ +|+. ..|.+++|++ |+++|
T Consensus 311 ~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~~--------------~~~~~l-~~h~-~~v~~v~~~~~~~~~p~~~~l 373 (393)
T 1erj_A 311 DFVLSVATTQNDEYILSGSKDRG-VLFWDKKSG--------------NPLLML-QGHR-NSVISVAVANGSSLGPEYNVF 373 (393)
T ss_dssp SCEEEEEECGGGCEEEEEETTSE-EEEEETTTC--------------CEEEEE-ECCS-SCEEEEEECSSCTTCTTCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCe-EEEEECCCC--------------eEEEEE-CCCC-CCEEEEEecCCcCcCCCCCEE
Confidence 99999999999999999999997 999999887 556666 4554 4599999986 78999
Q ss_pred EEEeCCCcEEEEecCCC
Q 005349 396 MISSSRGTSHLFAINPL 412 (701)
Q Consensus 396 AsgS~dgTI~Iwdl~~~ 412 (701)
|+|+.||+|+||++...
T Consensus 374 ~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 374 ATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEETTSEEEEEEEEEC
T ss_pred EEECCCCcEEECccccc
Confidence 99999999999998653
No 21
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.90 E-value=1.2e-21 Score=211.55 Aligned_cols=260 Identities=10% Similarity=0.096 Sum_probs=172.7
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCc-----------
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRS----------- 86 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~----------- 86 (701)
+.++..+.++.++|||+.+ ++....+..|...|..+.+.|+.. +|+.++.+...
T Consensus 79 ~~l~s~s~D~~v~iWd~~~-~~~~~~~~~h~~~v~~~~~s~~g~--------------~las~~~d~~v~iw~~~~~~~~ 143 (380)
T 3iz6_a 79 NWIVSASQDGRLIVWNALT-SQKTHAIKLHCPWVMECAFAPNGQ--------------SVACGGLDSACSIFNLSSQADR 143 (380)
T ss_dssp SCEEEEETTSEEEEEETTT-TEEEEEEECCCTTCCCCEECTTSS--------------EEEECCSSSCCEEEECCCCSSC
T ss_pred CEEEEEeCCCeEEEEECCC-CccceEEecCCCCEEEEEECCCCC--------------EEEEeeCCCcEEEEECCCCccc
Confidence 4555666677799999987 456666777889999999987642 23222211000
Q ss_pred -CC----ccccCCcccccCCC-CCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe------cCCCEEEEEec---CCEEEE
Q 005349 87 -CG----TKVQDGLATACNGT-SANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK------FRSPIYSVRCS---SRVVAI 151 (701)
Q Consensus 87 -~~----~~~~d~~~~~~~g~-~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~------f~s~V~sV~~s---~~~LaV 151 (701)
+. .....+.+.+.... .+...........+++|++||+++++++..+. +...|.++.++ +++|++
T Consensus 144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 223 (380)
T 3iz6_a 144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS 223 (380)
T ss_dssp CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE
T ss_pred cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEE
Confidence 00 00000000000000 00000001112357899999999999998883 24579999995 466666
Q ss_pred -EeCCEEEEEECCC-CceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccc
Q 005349 152 -CQAAQVHCFDAAT-LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGF 229 (701)
Q Consensus 152 -a~~~~I~iwDl~t-~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~ 229 (701)
+.|++|++||++. .+.+.++..|... +.. ++|.. +
T Consensus 224 gs~D~~v~~wd~~~~~~~~~~~~~h~~~------------v~~-------v~~~p-------------~----------- 260 (380)
T 3iz6_a 224 GSCDTTVRLWDLRITSRAVRTYHGHEGD------------INS-------VKFFP-------------D----------- 260 (380)
T ss_dssp EETTSCEEEEETTTTCCCCEEECCCSSC------------CCE-------EEECT-------------T-----------
T ss_pred EECCCeEEEEECCCCCcceEEECCcCCC------------eEE-------EEEec-------------C-----------
Confidence 6789999999984 4556666555321 111 22220 0
Q ss_pred cCCCcceeehhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECC
Q 005349 230 ASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV 309 (701)
Q Consensus 230 ~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~ 309 (701)
+ ..++++..||+|+|||+.
T Consensus 261 ---~----------------------------------------------------------~~l~s~s~D~~i~lwd~~ 279 (380)
T 3iz6_a 261 ---G----------------------------------------------------------QRFGTGSDDGTCRLFDMR 279 (380)
T ss_dssp ---S----------------------------------------------------------SEEEEECSSSCEEEEETT
T ss_pred ---C----------------------------------------------------------CeEEEEcCCCeEEEEECC
Confidence 0 023446678999999999
Q ss_pred CCcEEEEeecCCC-------CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe---ccCC
Q 005349 310 SKNVIAQFRAHKS-------PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---RGLT 379 (701)
Q Consensus 310 s~~~i~~~~~H~~-------~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~---rG~~ 379 (701)
+++.+..+..|.. .|.+++|+|+|++|++|+.||+ |+|||+..+ ..+..+. .++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~~--------------~~~~~~~~~~~~h- 343 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLLA--------------EMVLNLGTLQNSH- 343 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTTC--------------CEEEEECCSCSSC-
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCCC--------------ceEEEEecccCCC-
Confidence 9999888876542 4899999999999999999998 999999876 4445542 343
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
...|.+++|||||++||+||.|++|+||++...
T Consensus 344 ~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 344 EGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 346999999999999999999999999998754
No 22
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.90 E-value=9.8e-22 Score=226.01 Aligned_cols=236 Identities=11% Similarity=0.136 Sum_probs=174.5
Q ss_pred CCCcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 005349 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (701)
Q Consensus 16 ~~~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~ 95 (701)
+..+.|+.+..+.++|||+.+ +.....+..|.+.|.++++.|+. .+||..+.
T Consensus 28 pdg~~l~~~~~~~v~l~~~~~-~~~~~~~~~h~~~v~~~~~spdg--------------~~lasg~~------------- 79 (611)
T 1nr0_A 28 PAGDKIQYCNGTSVYTVPVGS-LTDTEIYTEHSHQTTVAKTSPSG--------------YYCASGDV------------- 79 (611)
T ss_dssp TTSSEEEEEETTEEEEEETTC-SSCCEEECCCSSCEEEEEECTTS--------------SEEEEEET-------------
T ss_pred CCCCEEEeCCCCEEEEecCCC-cccCeEecCCCCceEEEEECCCC--------------cEEEEEeC-------------
Confidence 346678888888999999986 45667777899999999999853 25654442
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEECCCCc--EEEEEe-cCCCEEEEEec--CCEEEEEeC-----CEEEEEECCCC
Q 005349 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCS--SRVVAICQA-----AQVHCFDAATL 165 (701)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~--~v~tL~-f~s~V~sV~~s--~~~LaVa~~-----~~I~iwDl~t~ 165 (701)
+++|+|||+.+++ +..++. +..+|.+|+|+ ++.|+++.+ ++|++||. +
T Consensus 80 --------------------d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~ 137 (611)
T 1nr0_A 80 --------------------HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--G 137 (611)
T ss_dssp --------------------TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--C
T ss_pred --------------------CCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--C
Confidence 2789999998654 445555 46799999997 467776543 27888884 4
Q ss_pred ceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchh
Q 005349 166 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (701)
Q Consensus 166 ~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk 245 (701)
+...++..|.. ++ ..++|.. + +.
T Consensus 138 ~~~~~l~gh~~---------------~v----~~v~f~p-------------~--------------~~----------- 160 (611)
T 1nr0_A 138 TSNGNLTGQAR---------------AM----NSVDFKP-------------S--------------RP----------- 160 (611)
T ss_dssp CBCBCCCCCSS---------------CE----EEEEECS-------------S--------------SS-----------
T ss_pred CCcceecCCCC---------------Cc----eEEEECC-------------C--------------CC-----------
Confidence 43333433321 11 1233321 0 00
Q ss_pred chhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeE
Q 005349 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS 325 (701)
Q Consensus 246 ~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is 325 (701)
..++++..|++|+|||..+++++..|.+|...|.
T Consensus 161 ----------------------------------------------~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~ 194 (611)
T 1nr0_A 161 ----------------------------------------------FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH 194 (611)
T ss_dssp ----------------------------------------------CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEE
T ss_pred ----------------------------------------------eEEEEEeCCCeEEEEECCCCeEeeeeccccCceE
Confidence 0133456789999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec------cCCcccEEEEEEcCCCCEEEEEe
Q 005349 326 ALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR------GLTNAVIQDISFSDDSNWIMISS 399 (701)
Q Consensus 326 ~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r------G~~~a~I~~iaFSpDg~~lAsgS 399 (701)
+++|+|||++||||+.||+ |+|||+.++ .++..+.. +|. ..|.+++|+|||++||+++
T Consensus 195 ~v~fspdg~~las~s~D~~-i~lwd~~~g--------------~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~l~s~s 258 (611)
T 1nr0_A 195 SVRYNPDGSLFASTGGDGT-IVLYNGVDG--------------TKTGVFEDDSLKNVAHS-GSVFGLTWSPDGTKIASAS 258 (611)
T ss_dssp EEEECTTSSEEEEEETTSC-EEEEETTTC--------------CEEEECBCTTSSSCSSS-SCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCCEEEEEECCCc-EEEEECCCC--------------cEeeeeccccccccccC-CCEEEEEECCCCCEEEEEe
Confidence 9999999999999999998 999999876 45555533 443 4699999999999999999
Q ss_pred CCCcEEEEecCCCCCceeecC
Q 005349 400 SRGTSHLFAINPLGGSVNFQP 420 (701)
Q Consensus 400 ~dgTI~Iwdl~~~g~~~~~~~ 420 (701)
.|++|+|||+.+......+..
T Consensus 259 ~D~~v~lWd~~~~~~~~~~~~ 279 (611)
T 1nr0_A 259 ADKTIKIWNVATLKVEKTIPV 279 (611)
T ss_dssp TTSEEEEEETTTTEEEEEEEC
T ss_pred CCCeEEEEeCCCCceeeeecC
Confidence 999999999987655555543
No 23
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.90 E-value=5.2e-21 Score=199.03 Aligned_cols=239 Identities=15% Similarity=0.214 Sum_probs=177.3
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.++..+.++.++|||+.+ ++....+..|.++|..+.+.|+. .+|+.++.
T Consensus 36 ~~l~s~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~s~~~--------------- 85 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDS--------------NLLVSASD--------------- 85 (312)
T ss_dssp SEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS--------------SEEEEEET---------------
T ss_pred CEEEEeeCCCeEEEEeCCC-cccchhhccCCCceEEEEEcCCC--------------CEEEEECC---------------
Confidence 3455556667799999987 56777788899999999998742 24554442
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEec
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t 173 (701)
+++|++||+++++++.+++. ...|.++.|+ +++|++ +.+++|++||+.+++++.++..
T Consensus 86 ------------------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 147 (312)
T 4ery_A 86 ------------------DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 147 (312)
T ss_dssp ------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ------------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC
Confidence 17899999999999999985 6789999997 456666 6789999999999988877765
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEE
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~ 253 (701)
+.. ++ .-+++.. + +.
T Consensus 148 ~~~---------------~v----~~~~~~~-------------~--------------~~------------------- 162 (312)
T 4ery_A 148 HSD---------------PV----SAVHFNR-------------D--------------GS------------------- 162 (312)
T ss_dssp CSS---------------CE----EEEEECT-------------T--------------SS-------------------
T ss_pred CCC---------------cE----EEEEEcC-------------C--------------CC-------------------
Confidence 421 11 1123321 0 00
Q ss_pred cCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEee-cCCCCeEEEEEcCC
Q 005349 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPS 332 (701)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-~H~~~Is~laFSPd 332 (701)
.++.+..||.|++||+.+++.+..+. .|..+|.+++|+|+
T Consensus 163 ---------------------------------------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (312)
T 4ery_A 163 ---------------------------------------LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 203 (312)
T ss_dssp ---------------------------------------EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTT
T ss_pred ---------------------------------------EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCC
Confidence 12234568999999999998887765 66789999999999
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCccc--EEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAV--IQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 333 G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~--I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
|++|++++.||+ |+|||+.++ ..+..+. ++.... +....+.+++++|++++.||+|+|||+.
T Consensus 204 ~~~l~~~~~d~~-i~iwd~~~~--------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 204 GKYILAATLDNT-LKLWDYSKG--------------KCLKTYT-GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp SSEEEEEETTTE-EEEEETTTT--------------EEEEEEC-SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred CCEEEEEcCCCe-EEEEECCCC--------------cEEEEEE-ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 999999999997 999999876 5555553 433221 3333344789999999999999999998
Q ss_pred CCCCceeecCCCCC
Q 005349 411 PLGGSVNFQPTDAN 424 (701)
Q Consensus 411 ~~g~~~~~~~H~~~ 424 (701)
.......+.+|...
T Consensus 268 ~~~~~~~~~~h~~~ 281 (312)
T 4ery_A 268 TKEIVQKLQGHTDV 281 (312)
T ss_dssp TCCEEEEECCCSSC
T ss_pred CchhhhhhhccCCc
Confidence 87666677887543
No 24
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.90 E-value=3.5e-21 Score=206.29 Aligned_cols=223 Identities=13% Similarity=0.121 Sum_probs=167.5
Q ss_pred CcEEEEeccCCeEEEEecCCC-----CeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCcccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEAD-----NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~-----~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~ 92 (701)
..++..|.++.+++|++.... .....+..|.+.|.++.+.|+. ..|+.++.
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~t~s~---------- 174 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD--------------MQILTASG---------- 174 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS--------------SEEEEEET----------
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC--------------CEEEEEeC----------
Confidence 445555667779999986421 2334556789999999987642 23443332
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec----CCEEEE-EeCCEEEEEECCCCc
Q 005349 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE 166 (701)
Q Consensus 93 d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s----~~~LaV-a~~~~I~iwDl~t~~ 166 (701)
+++|++||++++++++++.. ...|.+++++ +++|++ +.|++|++||+++++
T Consensus 175 -----------------------D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~ 231 (354)
T 2pbi_B 175 -----------------------DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ 231 (354)
T ss_dssp -----------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC
T ss_pred -----------------------CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 27899999999999999975 6789999885 256666 678999999999999
Q ss_pred eeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhc
Q 005349 167 IEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (701)
Q Consensus 167 ~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~ 246 (701)
++.++..|... +. -++|.. + +.
T Consensus 232 ~~~~~~~h~~~------------v~-------~v~~~p-------------~--------------~~------------ 253 (354)
T 2pbi_B 232 CVQAFETHESD------------VN-------SVRYYP-------------S--------------GD------------ 253 (354)
T ss_dssp EEEEECCCSSC------------EE-------EEEECT-------------T--------------SS------------
T ss_pred EEEEecCCCCC------------eE-------EEEEeC-------------C--------------CC------------
Confidence 88887665321 11 123321 0 00
Q ss_pred hhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecC--CCCe
Q 005349 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH--KSPI 324 (701)
Q Consensus 247 la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H--~~~I 324 (701)
.++++..||+|+|||+.+++.+..+..+ ...+
T Consensus 254 ----------------------------------------------~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 254 ----------------------------------------------AFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp ----------------------------------------------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred ----------------------------------------------EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 1234567899999999999888777654 3589
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcE
Q 005349 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 404 (701)
Q Consensus 325 s~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI 404 (701)
.+++|+|+|++|++++.||+ |+|||+.++ ..+..+ .|+. ..|.+++|||||++||+|+.|++|
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~--------------~~~~~l-~~h~-~~v~~l~~spdg~~l~sgs~D~~v 350 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYT-INVWDVLKG--------------SRVSIL-FGHE-NRVSTLRVSPDGTAFCSGSWDHTL 350 (354)
T ss_dssp EEEEECTTSSEEEEEETTSC-EEEEETTTC--------------SEEEEE-CCCS-SCEEEEEECTTSSCEEEEETTSEE
T ss_pred eEEEEeCCCCEEEEEECCCc-EEEEECCCC--------------ceEEEE-ECCC-CcEEEEEECCCCCEEEEEcCCCCE
Confidence 99999999999999999998 999999876 455555 4554 469999999999999999999999
Q ss_pred EEEe
Q 005349 405 HLFA 408 (701)
Q Consensus 405 ~Iwd 408 (701)
+||+
T Consensus 351 ~vW~ 354 (354)
T 2pbi_B 351 RVWA 354 (354)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9996
No 25
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.89 E-value=3.4e-21 Score=201.86 Aligned_cols=297 Identities=9% Similarity=0.037 Sum_probs=182.6
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeee----ccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccC
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSR----YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~----~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d 93 (701)
..+++.+.++.++|||+........+-.. |++.|.++.+.|+... ...+|++++.
T Consensus 35 ~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------~~~~l~~~~~----------- 93 (366)
T 3k26_A 35 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNT----------SHPLLAVAGS----------- 93 (366)
T ss_dssp CEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTT----------CCEEEEEEET-----------
T ss_pred ceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCC----------CCCEEEEecC-----------
Confidence 44777777778999999874433333321 4578999999885311 1235555442
Q ss_pred CcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe-cCCCEEEEEecC---CEEEE-EeCCEEEEEECCCCcee
Q 005349 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIE 168 (701)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~-f~s~V~sV~~s~---~~LaV-a~~~~I~iwDl~t~~~~ 168 (701)
+++|++||+.+++++.++. +...|.+++|++ ++|++ +.+++|++||+.+++.+
T Consensus 94 ----------------------dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 151 (366)
T 3k26_A 94 ----------------------RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV 151 (366)
T ss_dssp ----------------------TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE
T ss_pred ----------------------CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE
Confidence 1789999999999999998 578999999964 66776 56889999999999888
Q ss_pred EEEe---cCCCccCCCCCCCCCcccceeeecc--ceEEEcCCC--ceecCCCcc-CCcccccccccccccCCCcceeehh
Q 005349 169 YAIL---TNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSP--VVVSNDGRV-NPQHLMQSRSFSGFASNGSRVAHYA 240 (701)
Q Consensus 169 ~tl~---t~~~~~~~~~~~~~~~~~~piAls~--r~LAya~~~--~~~s~~gr~-sp~~l~~s~~~~~~~s~g~~v~~~a 240 (701)
..+. .+.. .+..++++| ++|+.++.+ +..+..... ....+.....+++ .
T Consensus 152 ~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~-------- 208 (366)
T 3k26_A 152 AIFGGVEGHRD------------EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP---N-------- 208 (366)
T ss_dssp EEECSTTSCSS------------CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCG---G--------
T ss_pred EEecccccccC------------ceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecC---C--------
Confidence 7773 2211 223455554 556554322 222211000 0000000000000 0
Q ss_pred hhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc--------
Q 005349 241 KESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-------- 312 (701)
Q Consensus 241 ~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~-------- 312 (701)
.+.++..........+... ......+....- ....++++..+|.|++||+.++.
T Consensus 209 ---~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~-------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 270 (366)
T 3k26_A 209 ---KTNRPFISQKIHFPDFSTR--------DIHRNYVDCVRW-------LGDLILSKSCENAIVCWKPGKMEDDIDKIKP 270 (366)
T ss_dssp ---GCSSCCCCEEECCCSEEEC--------SSCSSCCCEEEE-------ETTEEEEECSSSEEEEEEESSTTCCGGGCCT
T ss_pred ---CCcccccceeeccCccccc--------cCCcceEEEEEE-------cCCEEEEEecCCEEEEEeCCCcccccccccc
Confidence 0000000000000000000 000000000000 01245677889999999998764
Q ss_pred ------EEEEeecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC-cccE
Q 005349 313 ------VIAQFRAHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT-NAVI 383 (701)
Q Consensus 313 ------~i~~~~~H~~~Is~laFSPd--G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~-~a~I 383 (701)
.+..+..|..+|.+++|+|+ |++|++++.||. |+|||+..+.. ....+..+. ++. ...|
T Consensus 271 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~-i~vwd~~~~~~----------~~~~~~~~~-~~~~~~~v 338 (366)
T 3k26_A 271 SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK-LYVWDLEVEDP----------HKAKCTTLT-HHKCGAAI 338 (366)
T ss_dssp TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC-EEEEECCSSSG----------GGCEEEEEC-CTTCCSCE
T ss_pred CCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc-EEEEECCCCCC----------ccccceEEc-ccccCCce
Confidence 48899999999999999999 999999999998 99999987510 112344453 332 3569
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 384 QDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 384 ~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
.+++|+||+++|++++.||+|+|||+.
T Consensus 339 ~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 339 RQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999999999999999999999985
No 26
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.89 E-value=3.6e-20 Score=190.89 Aligned_cols=270 Identities=14% Similarity=0.187 Sum_probs=177.8
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEee--eccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs--~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~ 95 (701)
..+|++|.++.++|||+++ +++.+++. .|.+.|.++.+.|+. .+|+..+.
T Consensus 36 ~~~lAvg~D~tV~iWd~~t-g~~~~~~~~~~~~~~V~~v~~~~~~--------------~~l~sgs~------------- 87 (318)
T 4ggc_A 36 GNVLAVALDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEG--------------NYLAVGTS------------- 87 (318)
T ss_dssp TSEEEEEETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTS--------------SEEEEEET-------------
T ss_pred CCEEEEEeCCEEEEEECCC-CCEEEEEEecCCCCeEEEEEECCCC--------------CEEEEEEC-------------
Confidence 3589999999999999987 66777665 467789999998753 24554432
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecCCEEEE-EeCCEEEEEECCCCc-eeEEEe
Q 005349 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLE-IEYAIL 172 (701)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t~~-~~~tl~ 172 (701)
+++|++||++++++++++.. ...+.++.+.+++|++ +.++.+.+|+..+.. .+.++.
T Consensus 88 --------------------Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~ 147 (318)
T 4ggc_A 88 --------------------SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 147 (318)
T ss_dssp --------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred --------------------CCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence 27899999999999999986 5678888888888887 567899999988764 445555
Q ss_pred cCCCccCCCCCCCCCcccceeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhce
Q 005349 173 TNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (701)
Q Consensus 173 t~~~~~~~~~~~~~~~~~~piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~g 250 (701)
.+... ...++..+ ++|+.++.+ ..|..|..+..+....-
T Consensus 148 ~~~~~------------~~~~~~~~~~~~l~s~~~d---------------------------~~i~iwd~~~~~~~~~~ 188 (318)
T 4ggc_A 148 GHSQE------------VCGLRWAPDGRHLASGGND---------------------------NLVNVWPSAPGEGGWVP 188 (318)
T ss_dssp CCSSC------------EEEEEECTTSSEEEEEETT---------------------------SCEEEEESSCBTTBSCC
T ss_pred CccCc------------eEEEEEcCCCCEEEEEecC---------------------------cceeEEECCCCcccccc
Confidence 55321 11122222 444433221 11211111111100000
Q ss_pred eEE-cCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEE
Q 005349 251 IVN-LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCF 329 (701)
Q Consensus 251 l~~-lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laF 329 (701)
+.. ....+ .+ +.....|.+.. . -....+..++.|+|||.......... .|...+..++|
T Consensus 189 ~~~~~~~~~--~v--~~~~~~~~~~~------------~---~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~ 248 (318)
T 4ggc_A 189 LQTFTQHQG--AV--KAVAWCPWQSN------------V---LATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILW 248 (318)
T ss_dssp SEEECCCCS--CE--EEEEECTTSTT------------E---EEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEE
T ss_pred eeeecccCC--ce--EEEEecCCCCc------------E---EEEEecCCCCEEEEEecccccccccc-cceeeeeeeee
Confidence 000 00000 00 00000111000 0 01234567899999999988776554 56678999999
Q ss_pred cCCCCEEEEEe--CCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005349 330 DPSGILLVTAS--VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (701)
Q Consensus 330 SPdG~lLaTaS--~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iw 407 (701)
+|++..|++++ .||+ |+|||+.++ ..+.+| +||. ..|.+|+|||||++||+||.||+|+||
T Consensus 249 ~~~~~~~~~~sg~~d~~-i~iwd~~~~--------------~~~~~l-~gH~-~~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQ-LVIWKYPTM--------------AKVAEL-KGHT-SRVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp ETTTTEEEEEECTTTCC-EEEEETTTC--------------CEEEEE-CCCS-SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred cccccceEEEEEcCCCE-EEEEECCCC--------------cEEEEE-cCCC-CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 99999988876 6887 999999887 677777 4654 469999999999999999999999999
Q ss_pred ecCC
Q 005349 408 AINP 411 (701)
Q Consensus 408 dl~~ 411 (701)
|+..
T Consensus 312 d~~~ 315 (318)
T 4ggc_A 312 RCFE 315 (318)
T ss_dssp CCSC
T ss_pred ECCC
Confidence 9965
No 27
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.89 E-value=1.8e-20 Score=194.99 Aligned_cols=216 Identities=15% Similarity=0.210 Sum_probs=166.9
Q ss_pred eeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcEE
Q 005349 40 VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVV 119 (701)
Q Consensus 40 ~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tV 119 (701)
....+..|.++|.++++.|+. .+|+.++. +++|
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~--------------~~l~s~~~---------------------------------dg~i 47 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNG--------------EWLASSSA---------------------------------DKLI 47 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTS--------------SEEEEEET---------------------------------TSCE
T ss_pred eEEEEcccCCcEEEEEECCCC--------------CEEEEeeC---------------------------------CCeE
Confidence 344455789999999998742 25554442 1669
Q ss_pred EEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccceeee
Q 005349 120 HFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAV 195 (701)
Q Consensus 120 riWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAl 195 (701)
++||+.+++++.++.. ...|.+++|+ +++|++ +.++.|++||+.+++++.++..+... +
T Consensus 48 ~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---------------v-- 110 (312)
T 4ery_A 48 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---------------V-- 110 (312)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC---------------E--
T ss_pred EEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC---------------E--
Confidence 9999999999998874 6789999997 466766 57889999999999988888765321 1
Q ss_pred ccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCCCCC
Q 005349 196 GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQN 275 (701)
Q Consensus 196 s~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~ 275 (701)
..++|.. + +.
T Consensus 111 --~~~~~~~-------------~--------------~~----------------------------------------- 120 (312)
T 4ery_A 111 --FCCNFNP-------------Q--------------SN----------------------------------------- 120 (312)
T ss_dssp --EEEEECS-------------S--------------SS-----------------------------------------
T ss_pred --EEEEEcC-------------C--------------CC-----------------------------------------
Confidence 1123321 0 00
Q ss_pred ccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCC
Q 005349 276 SLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI 355 (701)
Q Consensus 276 s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~ 355 (701)
.++++..||.|+|||+.+++.+..+..|..+|.+++|+|+|++|++++.||+ |++||+.++
T Consensus 121 -----------------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~wd~~~~- 181 (312)
T 4ery_A 121 -----------------LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASG- 181 (312)
T ss_dssp -----------------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTC-
T ss_pred -----------------EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc-EEEEECCCC-
Confidence 1233456899999999999999999999999999999999999999999998 999999876
Q ss_pred CCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCC
Q 005349 356 LGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 422 (701)
Q Consensus 356 ~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~ 422 (701)
..+..+... ....|..++|+||+++|++++.|++|+|||+........+..|.
T Consensus 182 -------------~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 234 (312)
T 4ery_A 182 -------------QCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234 (312)
T ss_dssp -------------CEEEEECCS-SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSC
T ss_pred -------------ceeeEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecC
Confidence 455555433 33459999999999999999999999999998765555666664
No 28
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.89 E-value=9.2e-21 Score=213.15 Aligned_cols=217 Identities=17% Similarity=0.287 Sum_probs=163.4
Q ss_pred CcEEEEeccC-CeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGYRS-GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~~~-g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
.+.|+.|..+ .+++||.+ ++....+..|.++|+++++.|+. .+|+..+.
T Consensus 356 g~~l~~~~~dg~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~dg--------------~~l~~~~~-------------- 405 (577)
T 2ymu_A 356 GQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDG--------------QTIASASD-------------- 405 (577)
T ss_dssp SSEEEEEETTSEEEEEETT--CCEEEEEECCSSCEEEEEECTTS--------------SCEEEEET--------------
T ss_pred CCEEEEEeCCCEEEEEcCC--CCEEEEecCCCCCeEEEEECCCC--------------CEEEEEeC--------------
Confidence 4566666555 49999964 46667777899999999998753 13444432
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEe
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAIL 172 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~ 172 (701)
+++|+|||. ++++++++.. ...|.+++|+ .++|++ +.+++|++||+ +.+.+.++.
T Consensus 406 -------------------d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~ 464 (577)
T 2ymu_A 406 -------------------DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLT 464 (577)
T ss_dssp -------------------TSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred -------------------CCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEc
Confidence 178999995 6788888764 6799999997 467776 56889999996 556677776
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeE
Q 005349 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (701)
Q Consensus 173 t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~ 252 (701)
.+.. ++ +.++|+. + +.
T Consensus 465 ~~~~---------------~v----~~~~~sp-------------d--------------~~------------------ 480 (577)
T 2ymu_A 465 GHSS---------------SV----RGVAFSP-------------D--------------GQ------------------ 480 (577)
T ss_dssp CCSS---------------CE----EEEEECT-------------T--------------SC------------------
T ss_pred CCCC---------------CE----EEEEEcC-------------C--------------CC------------------
Confidence 5532 11 1233431 0 11
Q ss_pred EcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCC
Q 005349 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (701)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd 332 (701)
.++++..||.|+|||. +++++..+.+|..+|++|+|+||
T Consensus 481 ----------------------------------------~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~d 519 (577)
T 2ymu_A 481 ----------------------------------------TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD 519 (577)
T ss_dssp ----------------------------------------EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTT
T ss_pred ----------------------------------------EEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCC
Confidence 1223456899999995 67889999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005349 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 333 G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwd 408 (701)
|++||+++.||+ |+|||. ++ .++..+ +||. ..|.+++|+|||++|++++.|++|+|||
T Consensus 520 g~~l~s~~~dg~-v~lwd~-~~--------------~~~~~~-~~h~-~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 520 GQTIASASDDKT-VKLWNR-NG--------------QLLQTL-TGHS-SSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSE-EEEECT-TS--------------CEEEEE-ECCS-SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEECcCE-EEEEeC-CC--------------CEEEEE-cCCC-CCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999997 999995 34 466666 4654 4699999999999999999999999997
No 29
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.89 E-value=1.5e-20 Score=200.26 Aligned_cols=242 Identities=14% Similarity=0.190 Sum_probs=166.1
Q ss_pred CcEEEEeccCCeEEEEecCCCCe-eE-EeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNV-HD-LVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~-~e-lvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~ 95 (701)
+.++..|.++.++|||++..... .. +...|.+.|+++++.|+. .+|+.++.
T Consensus 29 ~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g--------------~~l~s~s~------------- 81 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG--------------NYLASASF------------- 81 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS--------------SEEEEEET-------------
T ss_pred CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC--------------CEEEEEEC-------------
Confidence 44555666778999999863211 22 224688999999998743 25554442
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEECCCCc--EEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCcee-
Q 005349 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIE- 168 (701)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~--~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~- 168 (701)
+++|+|||+.+++ ++.+++. ...|.+|+|+ +++|++ +.|++|++||+.+.+..
T Consensus 82 --------------------D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 82 --------------------DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp --------------------TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred --------------------CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence 2679999998874 5677764 6799999997 467776 56899999999876433
Q ss_pred --EEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhc
Q 005349 169 --YAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (701)
Q Consensus 169 --~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~ 246 (701)
..+..|.. ++ ..+++.. + +
T Consensus 142 ~~~~~~~h~~---------------~v----~~~~~~p-------------~--------------~------------- 162 (345)
T 3fm0_A 142 CVSVLNSHTQ---------------DV----KHVVWHP-------------S--------------Q------------- 162 (345)
T ss_dssp EEEEECCCCS---------------CE----EEEEECS-------------S--------------S-------------
T ss_pred EEEEecCcCC---------------Ce----EEEEECC-------------C--------------C-------------
Confidence 23322211 01 1122321 0 0
Q ss_pred hhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc--EEEEeecCCCCe
Q 005349 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKSPI 324 (701)
Q Consensus 247 la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~--~i~~~~~H~~~I 324 (701)
..++++..||.|+|||+.+++ ++..+.+|..+|
T Consensus 163 ---------------------------------------------~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v 197 (345)
T 3fm0_A 163 ---------------------------------------------ELLASASYDDTVKLYREEEDDWVCCATLEGHESTV 197 (345)
T ss_dssp ---------------------------------------------SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ---------------------------------------------CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCce
Confidence 022345678999999998875 557889999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCC-ccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCc
Q 005349 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSS-ACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGT 403 (701)
Q Consensus 325 s~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s-~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgT 403 (701)
.+|+|+|+|++||+++.||+ |+|||+......... .........++..+. +.+...|++++|+|++.+||+++.|++
T Consensus 198 ~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~ 275 (345)
T 3fm0_A 198 WSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDA 275 (345)
T ss_dssp EEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSC
T ss_pred EEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCe
Confidence 99999999999999999998 999997543111000 011112234555553 444556999999999999999999999
Q ss_pred EEEEecCCC
Q 005349 404 SHLFAINPL 412 (701)
Q Consensus 404 I~Iwdl~~~ 412 (701)
|+||++.+.
T Consensus 276 i~vw~~~~~ 284 (345)
T 3fm0_A 276 IRVFQEDPN 284 (345)
T ss_dssp EEEEEECTT
T ss_pred EEEEEeCCC
Confidence 999998754
No 30
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.88 E-value=3.7e-20 Score=196.54 Aligned_cols=239 Identities=15% Similarity=0.245 Sum_probs=161.1
Q ss_pred CcEEEEeccCCeEEEEecCCC------CeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEAD------NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKV 91 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~------~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~ 91 (701)
+.++..+.++.++|||+.... .....+..|.++|.++.+.|+. .+|+.++.
T Consensus 40 ~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--------------~~l~s~s~--------- 96 (343)
T 2xzm_R 40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--------------CFAISSSW--------- 96 (343)
T ss_dssp CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST--------------TEEEEEET---------
T ss_pred CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC--------------CEEEEEcC---------
Confidence 345555667779999997532 2344566789999999997642 24443332
Q ss_pred cCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe-cCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCce
Q 005349 92 QDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEI 167 (701)
Q Consensus 92 ~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~-f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~ 167 (701)
+++|+|||++++++++++. +...|.+|+|+ +++|++ +.|++|++||+.. ++
T Consensus 97 ------------------------D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~ 151 (343)
T 2xzm_R 97 ------------------------DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-EC 151 (343)
T ss_dssp ------------------------TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CE
T ss_pred ------------------------CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-Cc
Confidence 2789999999999999987 46799999997 456665 6789999999973 33
Q ss_pred eEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhch
Q 005349 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (701)
Q Consensus 168 ~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~l 247 (701)
...+..... . ...+ ..++|.... ...
T Consensus 152 ~~~~~~~~~---~---------~~~v----~~~~~~~~~---------------------------~~~----------- 177 (343)
T 2xzm_R 152 KFSSAEKEN---H---------SDWV----SCVRYSPIM---------------------------KSA----------- 177 (343)
T ss_dssp EEECCTTTS---C---------SSCE----EEEEECCCC---------------------------CSC-----------
T ss_pred eeeeecccC---C---------Ccee----eeeeecccc---------------------------ccc-----------
Confidence 333221100 0 0011 123443100 000
Q ss_pred hceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEE
Q 005349 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISAL 327 (701)
Q Consensus 248 a~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~l 327 (701)
....|. ...++++..||.|+||| ...+....+++|..+|.++
T Consensus 178 -------------------~~~~~~------------------~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 219 (343)
T 2xzm_R 178 -------------------NKVQPF------------------APYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHL 219 (343)
T ss_dssp -------------------SCCCSS------------------CCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEE
T ss_pred -------------------cccCCC------------------CCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEE
Confidence 000000 01344567789999999 4567788999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005349 328 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (701)
Q Consensus 328 aFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iw 407 (701)
+|+|||++||||+.||+ |+|||+.... .....+..+ ..|.+++|+||+++|+++ .|++|+||
T Consensus 220 ~~s~~g~~l~sgs~dg~-v~iwd~~~~~-------------~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw 281 (343)
T 2xzm_R 220 SISPNGKYIATGGKDKK-LLIWDILNLT-------------YPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIF 281 (343)
T ss_dssp EECTTSSEEEEEETTCE-EEEEESSCCS-------------SCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEE
T ss_pred EECCCCCEEEEEcCCCe-EEEEECCCCc-------------ccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEE
Confidence 99999999999999997 9999995430 112233222 349999999999998766 47789999
Q ss_pred ecCCCCC
Q 005349 408 AINPLGG 414 (701)
Q Consensus 408 dl~~~g~ 414 (701)
++.+...
T Consensus 282 ~~~~~~~ 288 (343)
T 2xzm_R 282 NLMTQSK 288 (343)
T ss_dssp ESSSCCS
T ss_pred EeCCCCC
Confidence 9976543
No 31
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.88 E-value=1.8e-21 Score=210.13 Aligned_cols=267 Identities=14% Similarity=0.176 Sum_probs=171.8
Q ss_pred eEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCCCC
Q 005349 29 FQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHD 108 (701)
Q Consensus 29 ~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~~~~ 108 (701)
..+|+..+ ..+...+..|.++|.++++.|+. .+|+.++.
T Consensus 48 ~~~~~~~~-~~~~~~l~gH~~~V~~~~~sp~~--------------~~l~s~s~-------------------------- 86 (380)
T 3iz6_a 48 AVSFNPTD-LVCCRTLQGHSGKVYSLDWTPEK--------------NWIVSASQ-------------------------- 86 (380)
T ss_dssp CCCCCCCC-CEEEEEECCCSSCEEEEEECTTS--------------SCEEEEET--------------------------
T ss_pred ccccccce-eEEeecccccccEEEEEEEcCCC--------------CEEEEEeC--------------------------
Confidence 34566554 34566777899999999998743 24544432
Q ss_pred CCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCce-------eEEEecCCCc
Q 005349 109 LGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEI-------EYAILTNPIV 177 (701)
Q Consensus 109 ~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~-------~~tl~t~~~~ 177 (701)
+++|+|||+.+++.+++++. ...|.+++|+ +++|++ +.|+.|++||+.+... ...+..|...
T Consensus 87 -------D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~ 159 (380)
T 3iz6_a 87 -------DGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY 159 (380)
T ss_dssp -------TSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC
T ss_pred -------CCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc
Confidence 27899999999999999986 5689999996 567776 6789999999976431 1122222110
Q ss_pred cCCCCCCCCCcccceeeecc---ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEc
Q 005349 178 MGHPSAGGIGIGYGPLAVGP---RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (701)
Q Consensus 178 ~~~~~~~~~~~~~~piAls~---r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~l 254 (701)
...+++.| ..|+.+ +.+.+|..|-.+..+.+. .+
T Consensus 160 ------------v~~~~~~~~~~~~l~s~---------------------------s~D~~i~~wd~~~~~~~~----~~ 196 (380)
T 3iz6_a 160 ------------ASSCQYVPDQETRLITG---------------------------SGDQTCVLWDVTTGQRIS----IF 196 (380)
T ss_dssp ------------CCCCBCCSSSSSCEEEE---------------------------CTTSCEEEECTTTCCEEE----EE
T ss_pred ------------eEEEEEecCCCCEEEEE---------------------------CCCCcEEEEEcCCCcEEE----Ee
Confidence 11111111 122222 122333333222221110 01
Q ss_pred CCccceecccccccccCCCCC-cccc-ccCCCCCCCcccccccccCCCCeEEEEECC-CCcEEEEeecCCCCeEEEEEcC
Q 005349 255 GDLGYKKLSQYCSEFLPDSQN-SLQS-AIPGGKSNGTVNGHFPDADNVGMVIVRDIV-SKNVIAQFRAHKSPISALCFDP 331 (701)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~-s~~~-a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~-s~~~i~~~~~H~~~Is~laFSP 331 (701)
+. ..+.+.. .+.. ..... + ...++++..||.|+|||+. .++.+..+.+|..+|.+|+|+|
T Consensus 197 ~~------------~~~~~h~~~v~~~~~~~~--~---~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p 259 (380)
T 3iz6_a 197 GS------------EFPSGHTADVLSLSINSL--N---ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP 259 (380)
T ss_dssp CC------------CSSSSCCSCEEEEEECSS--S---CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT
T ss_pred ec------------ccCCCCccCeEEEEeecC--C---CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec
Confidence 00 0001110 0000 00000 0 1246678899999999998 5578889999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC-----cccEEEEEEcCCCCEEEEEeCCCcEEE
Q 005349 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT-----NAVIQDISFSDDSNWIMISSSRGTSHL 406 (701)
Q Consensus 332 dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~-----~a~I~~iaFSpDg~~lAsgS~dgTI~I 406 (701)
+|++|+||+.||+ |+|||+.++ ..+..+..... ...|.+++|+|||++|++|+.||+|+|
T Consensus 260 ~~~~l~s~s~D~~-i~lwd~~~~--------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~v 324 (380)
T 3iz6_a 260 DGQRFGTGSDDGT-CRLFDMRTG--------------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYV 324 (380)
T ss_dssp TSSEEEEECSSSC-EEEEETTTT--------------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEE
T ss_pred CCCeEEEEcCCCe-EEEEECCCC--------------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEE
Confidence 9999999999998 999999987 45555432211 123889999999999999999999999
Q ss_pred EecCCCCCceee
Q 005349 407 FAINPLGGSVNF 418 (701)
Q Consensus 407 wdl~~~g~~~~~ 418 (701)
||+........+
T Consensus 325 wd~~~~~~~~~~ 336 (380)
T 3iz6_a 325 WDTLLAEMVLNL 336 (380)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCceEEEE
Confidence 999775544444
No 32
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.88 E-value=2.1e-20 Score=210.25 Aligned_cols=272 Identities=15% Similarity=0.264 Sum_probs=181.4
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.++..+.++.+++||.+ ++..+.+..|.++|..+.+.|+. .+|+.++.
T Consensus 275 ~~l~~~~~d~~i~~w~~~--~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~t~~~--------------- 323 (577)
T 2ymu_A 275 QTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDG--------------QTIASASD--------------- 323 (577)
T ss_dssp SEEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECTTS--------------SEEEEEET---------------
T ss_pred CEEEEEeCCCEEEEEeCC--CcEEEEEecCCCCeEEEEECCCC--------------CEEEEEeC---------------
Confidence 344445556679999975 46677777899999999987642 24554442
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe-cCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEec
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~-f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t 173 (701)
+++|++||+.+.+ +.++. +...|.+++|+ +++|++ ..++.|++||. +++.+.++..
T Consensus 324 ------------------d~~i~~w~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~ 383 (577)
T 2ymu_A 324 ------------------DKTVKLWNRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 383 (577)
T ss_dssp ------------------TSCEEEEETTSCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEEC
T ss_pred ------------------CCeEEEEeCCCCe-eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecC
Confidence 1669999986554 45554 46799999996 467776 56789999995 5677777766
Q ss_pred CCCccCCCCCCCCCcccceeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhcee
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl 251 (701)
+.. .+..++++| ++||.++.+ ..|..|... .+ +..-+
T Consensus 384 ~~~------------~v~~~~~s~dg~~l~~~~~d---------------------------~~v~~~~~~-~~-~~~~~ 422 (577)
T 2ymu_A 384 HSS------------SVRGVAFSPDGQTIASASDD---------------------------KTVKLWNRN-GQ-LLQTL 422 (577)
T ss_dssp CSS------------CEEEEEECTTSSCEEEEETT---------------------------SEEEEECTT-CC-EEEEE
T ss_pred CCC------------CeEEEEECCCCCEEEEEeCC---------------------------CEEEEEeCC-CC-EEEEe
Confidence 532 123455554 566655322 111111100 00 00000
Q ss_pred EEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC
Q 005349 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (701)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP 331 (701)
.++.. .+ +...+.|+ +..++++..||.|++||+ +++.+..+.+|..+|.+++|+|
T Consensus 423 --~~~~~--~v--~~~~~s~d------------------~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp 477 (577)
T 2ymu_A 423 --TGHSS--SV--WGVAFSPD------------------DQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP 477 (577)
T ss_dssp --ECCSS--CE--EEEEECTT------------------SSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT
T ss_pred --cCCCC--Ce--EEEEECCC------------------CCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC
Confidence 00000 00 00001111 124556778999999996 5678899999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 332 dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
||++||+++.||+ |+|||. ++ ..+..+. ++. ..|.+|+|||||++||+++.||+|+|||+.
T Consensus 478 d~~~las~~~d~~-i~iw~~-~~--------------~~~~~~~-~h~-~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~- 538 (577)
T 2ymu_A 478 DGQTIASASDDKT-VKLWNR-NG--------------QLLQTLT-GHS-SSVRGVAFSPDGQTIASASDDKTVKLWNRN- 538 (577)
T ss_dssp TSCEEEEEETTSE-EEEEET-TS--------------CEEEEEE-CCS-SCEEEEEECTTSSCEEEEETTSEEEEECTT-
T ss_pred CCCEEEEEeCCCE-EEEEcC-CC--------------CEEEEEe-CCC-CCEEEEEEcCCCCEEEEEECcCEEEEEeCC-
Confidence 9999999999987 999995 33 4556663 543 469999999999999999999999999963
Q ss_pred CCCceeecCCCCCc
Q 005349 412 LGGSVNFQPTDANF 425 (701)
Q Consensus 412 ~g~~~~~~~H~~~~ 425 (701)
......+.+|.+.+
T Consensus 539 ~~~~~~~~~h~~~v 552 (577)
T 2ymu_A 539 GQLLQTLTGHSSSV 552 (577)
T ss_dssp SCEEEEEECCSSCE
T ss_pred CCEEEEEcCCCCCE
Confidence 34445678886544
No 33
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8.8e-20 Score=190.91 Aligned_cols=249 Identities=10% Similarity=0.103 Sum_probs=177.3
Q ss_pred CcEEEEe-ccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLG-YRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g-~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
.+.|+.| .++.++|||+.+ +.....+..|.++|.++.+.|+. .+|+.++.
T Consensus 44 ~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~s~~~-------------- 94 (369)
T 3zwl_B 44 GDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDVDCFT--------------KYCVTGSA-------------- 94 (369)
T ss_dssp SCEEEEEESSSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred CCEEEEEeCCCEEEEEeCCC-chhhhhhhhcCCcEEEEEEcCCC--------------CEEEEEeC--------------
Confidence 4455554 566699999987 56667777799999999998742 25554442
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEE-eC-----CEEEEEECCCCcee
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC-QA-----AQVHCFDAATLEIE 168 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa-~~-----~~I~iwDl~t~~~~ 168 (701)
+++|++||+++++++.++.+...|.+++|+ +++|+++ .+ +.|++||+.+....
T Consensus 95 -------------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~ 155 (369)
T 3zwl_B 95 -------------------DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSAT 155 (369)
T ss_dssp -------------------TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTT
T ss_pred -------------------CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccc
Confidence 178999999999999999999999999996 4667664 45 79999998876543
Q ss_pred EEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchh
Q 005349 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (701)
Q Consensus 169 ~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la 248 (701)
..+...... ++. .+.. ..+ ...+..
T Consensus 156 ~~~~~~~~~--------------~~~------~~~~------~~~-------------------~~~~~~---------- 180 (369)
T 3zwl_B 156 HELTKVSEE--------------PIH------KIIT------HEG-------------------LDAATV---------- 180 (369)
T ss_dssp CCEEEECSS--------------CSE------EEEC------CTT-------------------CCCEEE----------
T ss_pred eeecccccc--------------eee------eccC------CcC-------------------ccceeE----------
Confidence 322211000 000 0000 000 000000
Q ss_pred ceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCC-CcEEEEeecCCCCeEEE
Q 005349 249 AGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KNVIAQFRAHKSPISAL 327 (701)
Q Consensus 249 ~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s-~~~i~~~~~H~~~Is~l 327 (701)
+ .+.|+ ...++.+..+|.|++||+.+ ++.+..+..|..+|.++
T Consensus 181 --~----------------~~~~~------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 224 (369)
T 3zwl_B 181 --A----------------GWSTK------------------GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM 224 (369)
T ss_dssp --E----------------EECGG------------------GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred --E----------------EEcCC------------------CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence 0 00000 01233456789999999999 78899999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCC-----
Q 005349 328 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG----- 402 (701)
Q Consensus 328 aFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dg----- 402 (701)
+|+|+|++|++++.||+ |++||+.++ ..+..+. ....+.+++|+|+++++++++.++
T Consensus 225 ~~~~~~~~l~~~~~d~~-i~v~d~~~~--------------~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (369)
T 3zwl_B 225 QFSPDLTYFITSSRDTN-SFLVDVSTL--------------QVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVT 286 (369)
T ss_dssp EECTTSSEEEEEETTSE-EEEEETTTC--------------CEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-----
T ss_pred EECCCCCEEEEecCCce-EEEEECCCC--------------ceeeeec---CCCCceeEEecCCCceEEEeecCCCceEE
Confidence 99999999999999997 999999876 4555554 234599999999999999999999
Q ss_pred ---------cEEEEecCCCCCceeecCCCC
Q 005349 403 ---------TSHLFAINPLGGSVNFQPTDA 423 (701)
Q Consensus 403 ---------TI~Iwdl~~~g~~~~~~~H~~ 423 (701)
++++||+........+..|..
T Consensus 287 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 316 (369)
T 3zwl_B 287 TTSANEGKFEARFYHKIFEEEIGRVQGHFG 316 (369)
T ss_dssp --------CEEEEEETTTCCEEEEEECCSS
T ss_pred EEecCCCcceeEEEecCCCcchhheecccC
Confidence 899999887766666777743
No 34
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.88 E-value=5e-20 Score=199.50 Aligned_cols=270 Identities=11% Similarity=0.130 Sum_probs=181.9
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeee-ccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSR-YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~-~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
..+++++.++.++|||++. +....++.. |.+.|.++++.|+. .+|+++..
T Consensus 104 ~~l~~~~~d~~v~lw~~~~-~~~~~~~~~~~~~~v~~v~~s~~~--------------~~l~~~~~-------------- 154 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADS-GSVSALAETDESTYVASVKWSHDG--------------SFLSVGLG-------------- 154 (401)
T ss_dssp TSEEEEEETTEEEEEETTT-CCEEEEEECCTTCCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred CCEEEEECCCeEEEeeCCC-CcEeEeeecCCCCCEEEEEECCCC--------------CEEEEECC--------------
Confidence 5688888888999999987 556665554 78999999998742 25655442
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecCCEEEE-EeCCEEEEEECCC-CceeEEEec
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAAT-LEIEYAILT 173 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t-~~~~~tl~t 173 (701)
+++|++||+.+++.+.++.. ...|.++++++++|++ +.++.|++||+++ ......+..
T Consensus 155 -------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 215 (401)
T 4aez_A 155 -------------------NGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQG 215 (401)
T ss_dssp -------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred -------------------CCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcC
Confidence 15699999999999999964 6799999999888877 5689999999994 455666665
Q ss_pred CCCccCCCCCCCCCcccceeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhcee
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl 251 (701)
+.. .+..++++| ++|+.++.+ ..|..|..+..+.+
T Consensus 216 ~~~------------~v~~~~~~~~~~~l~s~~~d---------------------------~~v~iwd~~~~~~~---- 252 (401)
T 4aez_A 216 HSS------------EVCGLAWRSDGLQLASGGND---------------------------NVVQIWDARSSIPK---- 252 (401)
T ss_dssp CSS------------CEEEEEECTTSSEEEEEETT---------------------------SCEEEEETTCSSEE----
T ss_pred CCC------------CeeEEEEcCCCCEEEEEeCC---------------------------CeEEEccCCCCCcc----
Confidence 532 122345544 556655321 12222211111100
Q ss_pred EEc-CCccceecccccccccCCCCCccccccCCCCCCCccccccccc--CCCCeEEEEECCCCcEEEEeecCCCCeEEEE
Q 005349 252 VNL-GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDA--DNVGMVIVRDIVSKNVIAQFRAHKSPISALC 328 (701)
Q Consensus 252 ~~l-Gd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~--~~dG~V~IwDl~s~~~i~~~~~H~~~Is~la 328 (701)
..+ +... .+. +..+.|++ ...++.+ ..||.|++||+.+++++..+. |...|.+++
T Consensus 253 ~~~~~~~~--~v~--~~~~~p~~-----------------~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~ 310 (401)
T 4aez_A 253 FTKTNHNA--AVK--AVAWCPWQ-----------------SNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLI 310 (401)
T ss_dssp EEECCCSS--CCC--EEEECTTS-----------------TTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEE
T ss_pred EEecCCcc--eEE--EEEECCCC-----------------CCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEE
Confidence 000 0000 000 00011111 0122332 379999999999999998886 567899999
Q ss_pred EcCCCCEEEEEe--CCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 005349 329 FDPSGILLVTAS--VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHL 406 (701)
Q Consensus 329 FSPdG~lLaTaS--~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~I 406 (701)
|+|+|++|++++ .||+ |+|||+..+ ....+..+ .++ ...|.+++|+||+++|++++.||+|+|
T Consensus 311 ~s~~~~~l~~~~g~~dg~-i~v~~~~~~------------~~~~~~~~-~~h-~~~v~~~~~s~dg~~l~s~~~dg~i~i 375 (401)
T 4aez_A 311 WSPHSKEIMSTHGFPDNN-LSIWSYSSS------------GLTKQVDI-PAH-DTRVLYSALSPDGRILSTAASDENLKF 375 (401)
T ss_dssp ECSSSSEEEEEECTTTCE-EEEEEEETT------------EEEEEEEE-ECC-SSCCCEEEECTTSSEEEEECTTSEEEE
T ss_pred ECCCCCeEEEEeecCCCc-EEEEecCCc------------cceeEEEe-cCC-CCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 999999999965 7886 999999875 22334444 343 346999999999999999999999999
Q ss_pred EecCCCCCc
Q 005349 407 FAINPLGGS 415 (701)
Q Consensus 407 wdl~~~g~~ 415 (701)
|++......
T Consensus 376 w~~~~~~~~ 384 (401)
T 4aez_A 376 WRVYDGDHV 384 (401)
T ss_dssp EECCC----
T ss_pred EECCCCccc
Confidence 999875443
No 35
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.87 E-value=7e-21 Score=200.30 Aligned_cols=254 Identities=16% Similarity=0.171 Sum_probs=161.9
Q ss_pred CcEEEEeccCCeEEEEecCCCC-eeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADN-VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~-~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
+.++..+.++.++|||+..... ....+..|.++|.++++.|.. ...+|+.++.
T Consensus 26 ~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~------------~~~~l~s~s~-------------- 79 (316)
T 3bg1_A 26 TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM------------YGNILASCSY-------------- 79 (316)
T ss_dssp CEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG------------GSSCEEEEET--------------
T ss_pred CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC------------CCCEEEEEEC--------------
Confidence 4455556667799999986321 234456799999999987521 0124554442
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCc--EEEEEe-cCCCEEEEEecC----CEEEE-EeCCEEEEEECCCCcee
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCSS----RVVAI-CQAAQVHCFDAATLEIE 168 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~--~v~tL~-f~s~V~sV~~s~----~~LaV-a~~~~I~iwDl~t~~~~ 168 (701)
+++|+|||+++++ .+.++. +...|.+|+|++ .+|++ +.|++|++||+.+....
T Consensus 80 -------------------D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~ 140 (316)
T 3bg1_A 80 -------------------DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW 140 (316)
T ss_dssp -------------------TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred -------------------CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence 2679999999984 555554 467899999974 46666 56899999999876422
Q ss_pred EEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchh
Q 005349 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (701)
Q Consensus 169 ~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la 248 (701)
........ .. ..... +++... ... +..+.
T Consensus 141 ~~~~~~~~-h~--------~~v~~-------~~~~~~-------------~~~-----------~~~~~----------- 169 (316)
T 3bg1_A 141 EVKKINNA-HT--------IGCNA-------VSWAPA-------------VVP-----------GSLID----------- 169 (316)
T ss_dssp EECCBTTS-SS--------SCBCC-------CEECCC-------------CCC---------------------------
T ss_pred ceeeeecc-cc--------CCcce-------EEEccc-------------cCC-----------ccccc-----------
Confidence 11111100 00 01111 223210 000 00000
Q ss_pred ceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC---cEEEEeecCCCCeE
Q 005349 249 AGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK---NVIAQFRAHKSPIS 325 (701)
Q Consensus 249 ~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~---~~i~~~~~H~~~Is 325 (701)
.+.+. .+. ....++++..||.|+|||+... +++..|++|..+|.
T Consensus 170 ---------------------~~~~~------~~~------~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~ 216 (316)
T 3bg1_A 170 ---------------------HPSGQ------KPN------YIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVR 216 (316)
T ss_dssp ----------------------CCSC------CCC------CCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEE
T ss_pred ---------------------ccccc------Ccc------ccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceE
Confidence 00000 000 0113556778999999999765 46788999999999
Q ss_pred EEEEcCCC----CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCC
Q 005349 326 ALCFDPSG----ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 326 ~laFSPdG----~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d 401 (701)
+++|+|++ .+||||+.||+ |+|||+.+...+. .....+ .++ ...|++++|+||+++||+++.|
T Consensus 217 ~v~~sp~~~~~~~~las~s~D~~-v~iw~~~~~~~~~-------~~~~~~----~~~-~~~v~~v~~sp~g~~las~~~D 283 (316)
T 3bg1_A 217 DVAWAPSIGLPTSTIASCSQDGR-VFIWTCDDASSNT-------WSPKLL----HKF-NDVVWHVSWSITANILAVSGGD 283 (316)
T ss_dssp EEECCCCSSCSCCEEEEEETTCE-EEEEECSSTTCCC-------CBCCEE----EEC-SSCEEEEEECTTTCCEEEEESS
T ss_pred EEEecCCCCCCCceEEEEcCCCe-EEEEEccCccccc-------hhhhhh----hcC-CCcEEEEEEcCCCCEEEEEcCC
Confidence 99999997 89999999997 9999987631000 001122 122 3469999999999999999999
Q ss_pred CcEEEEecCCCC
Q 005349 402 GTSHLFAINPLG 413 (701)
Q Consensus 402 gTI~Iwdl~~~g 413 (701)
++|+||+....+
T Consensus 284 ~~v~lw~~~~~g 295 (316)
T 3bg1_A 284 NKVTLWKESVDG 295 (316)
T ss_dssp SCEEEEEECTTS
T ss_pred CeEEEEEECCCC
Confidence 999999987544
No 36
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.1e-20 Score=196.82 Aligned_cols=248 Identities=13% Similarity=0.150 Sum_probs=165.4
Q ss_pred CcEEEEe-ccCCeEEEEecCC-CCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 005349 18 RRVLLLG-YRSGFQVWDVEEA-DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (701)
Q Consensus 18 ~~vL~~g-~~~g~qVwdv~~~-~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~ 95 (701)
.+.|+.| .++.++|||++.. ......+..|.++|.++.+.|.. ...+|+.++.
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------~~~~l~s~~~------------- 77 (379)
T 3jrp_A 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK------------FGTILASCSY------------- 77 (379)
T ss_dssp SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG------------GCSEEEEEET-------------
T ss_pred CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC------------CCCEEEEecc-------------
Confidence 4455555 5667999999842 23444556789999999997531 1135555542
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEECCCCc--EEEEEe-cCCCEEEEEecC----CEEEE-EeCCEEEEEECCCCce
Q 005349 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCSS----RVVAI-CQAAQVHCFDAATLEI 167 (701)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~--~v~tL~-f~s~V~sV~~s~----~~LaV-a~~~~I~iwDl~t~~~ 167 (701)
+++|++||+++++ .+..+. +...|.+++|++ ++|++ +.+++|++||+.+...
T Consensus 78 --------------------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 78 --------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp --------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred --------------------CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence 1669999999997 566665 467999999964 46665 6789999999998743
Q ss_pred --eEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchh
Q 005349 168 --EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (701)
Q Consensus 168 --~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk 245 (701)
...+..+.. ++ ..+++.... .... +..
T Consensus 138 ~~~~~~~~~~~---------------~v----~~~~~~~~~-------------~~~~---------~~~---------- 166 (379)
T 3jrp_A 138 TSPIIIDAHAI---------------GV----NSASWAPAT-------------IEED---------GEH---------- 166 (379)
T ss_dssp CCEEEEECCTT---------------CE----EEEEECCCC---------------------------------------
T ss_pred eeeEEecCCCC---------------ce----EEEEEcCcc-------------cccc---------ccc----------
Confidence 333333321 11 123333100 0000 000
Q ss_pred chhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc----EEEEeecCC
Q 005349 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHK 321 (701)
Q Consensus 246 ~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~----~i~~~~~H~ 321 (701)
. ..++ ...++.+..||.|+|||+.++. .+..+.+|.
T Consensus 167 ------------~----------~~~~------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~ 206 (379)
T 3jrp_A 167 ------------N----------GTKE------------------SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 206 (379)
T ss_dssp -------------------------CT------------------TCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred ------------c----------CCCC------------------CCEEEEEeCCCeEEEEEecCCCcceeeEEEEeccc
Confidence 0 0000 1134456678999999998764 567888999
Q ss_pred CCeEEEEEcCC---CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEE
Q 005349 322 SPISALCFDPS---GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (701)
Q Consensus 322 ~~Is~laFSPd---G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsg 398 (701)
.+|.+++|+|+ |.+|++++.||+ |+|||+..+.. ......+....+...|.+++|+|||++|+++
T Consensus 207 ~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iwd~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 274 (379)
T 3jrp_A 207 DWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQG-----------PWKKTLLKEEKFPDVLWRASWSLSGNVLALS 274 (379)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESSTTS-----------CCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred CcEeEEEECCCCCCCCeEEEEeCCCE-EEEEeCCCCCc-----------cceeeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence 99999999999 999999999998 89999987510 0111122111233459999999999999999
Q ss_pred eCCCcEEEEecCCCC
Q 005349 399 SSRGTSHLFAINPLG 413 (701)
Q Consensus 399 S~dgTI~Iwdl~~~g 413 (701)
+.||+|+||++...+
T Consensus 275 ~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 275 GGDNKVTLWKENLEG 289 (379)
T ss_dssp ESSSSEEEEEEEETT
T ss_pred cCCCcEEEEeCCCCC
Confidence 999999999998643
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.87 E-value=1.3e-19 Score=187.56 Aligned_cols=262 Identities=15% Similarity=0.254 Sum_probs=174.7
Q ss_pred CCcEEEEeccCCeEEEEecCCCCeeEEe--e--eccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCcccc
Q 005349 17 TRRVLLLGYRSGFQVWDVEEADNVHDLV--S--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (701)
Q Consensus 17 ~~~vL~~g~~~g~qVwdv~~~~~~~elv--s--~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~ 92 (701)
..++|+.|.++.++|||++.......+. . .|.++|.++.+.|+. .+|++++.
T Consensus 62 ~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~---------- 117 (337)
T 1gxr_A 62 PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG--------------CTLIVGGE---------- 117 (337)
T ss_dssp SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS--------------SEEEEEES----------
T ss_pred CCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC--------------CEEEEEcC----------
Confidence 3566777668889999998744332222 2 578999999998742 24554432
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCc--EEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCc
Q 005349 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLE 166 (701)
Q Consensus 93 d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~--~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~ 166 (701)
+++|++||+++++ .+..+.. ...|.+++++ +++|++ +.++.|++||+.+++
T Consensus 118 -----------------------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 174 (337)
T 1gxr_A 118 -----------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174 (337)
T ss_dssp -----------------------SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred -----------------------CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 1679999999998 4555543 5689999996 466666 568899999999998
Q ss_pred eeEEEecCCCccCCCCCCCCCcccceeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhch
Q 005349 167 IEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 244 (701)
Q Consensus 167 ~~~tl~t~~~~~~~~~~~~~~~~~~piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~s 244 (701)
....+..+.. ....++++| ++|+.++.+ ..+..|..+..
T Consensus 175 ~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~d---------------------------g~i~~~d~~~~ 215 (337)
T 1gxr_A 175 LVRQFQGHTD------------GASCIDISNDGTKLWTGGLD---------------------------NTVRSWDLREG 215 (337)
T ss_dssp EEEEECCCSS------------CEEEEEECTTSSEEEEEETT---------------------------SEEEEEETTTT
T ss_pred eeeeeecccC------------ceEEEEECCCCCEEEEEecC---------------------------CcEEEEECCCC
Confidence 8888765532 122345544 455544211 11222211111
Q ss_pred hchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCe
Q 005349 245 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPI 324 (701)
Q Consensus 245 k~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~I 324 (701)
+.+. .+.... .+ +...+.|+ ...++.+..+|.|++||+.+++. ..+..|..+|
T Consensus 216 ~~~~----~~~~~~--~v--~~~~~s~~------------------~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v 268 (337)
T 1gxr_A 216 RQLQ----QHDFTS--QI--FSLGYCPT------------------GEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCV 268 (337)
T ss_dssp EEEE----EEECSS--CE--EEEEECTT------------------SSEEEEEETTSCEEEEETTSSCE-EEECCCSSCE
T ss_pred ceEe----eecCCC--ce--EEEEECCC------------------CCEEEEEcCCCcEEEEECCCCCe-EEEcCCccce
Confidence 1110 000000 00 00001111 11345566789999999998875 5788999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcE
Q 005349 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 404 (701)
Q Consensus 325 s~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI 404 (701)
.+++|+|+|++|++++.||+ |++||+.++ ..+..+. +...|.+++|+||+++|++++.||+|
T Consensus 269 ~~~~~~~~~~~l~~~~~dg~-i~~~~~~~~--------------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 269 LSLKFAYCGKWFVSTGKDNL-LNAWRTPYG--------------ASIFQSK---ESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp EEEEECTTSSEEEEEETTSE-EEEEETTTC--------------CEEEEEE---CSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred eEEEECCCCCEEEEecCCCc-EEEEECCCC--------------eEEEEec---CCCcEEEEEECCCCCEEEEecCCCeE
Confidence 99999999999999999997 999999876 3443332 23459999999999999999999999
Q ss_pred EEEec
Q 005349 405 HLFAI 409 (701)
Q Consensus 405 ~Iwdl 409 (701)
+||++
T Consensus 331 ~iw~~ 335 (337)
T 1gxr_A 331 TVYEV 335 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 38
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.87 E-value=2.6e-20 Score=200.63 Aligned_cols=252 Identities=13% Similarity=0.130 Sum_probs=173.8
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.+++.+.++.++|||++. +.....+..|.++|.++++.|+. .+|+.++.
T Consensus 110 ~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~s~s~--------------- 159 (420)
T 3vl1_A 110 RRFILGTTEGDIKVLDSNF-NLQREIDQAHVSEITKLKFFPSG--------------EALISSSQ--------------- 159 (420)
T ss_dssp CEEEEEETTSCEEEECTTS-CEEEEETTSSSSCEEEEEECTTS--------------SEEEEEET---------------
T ss_pred CEEEEEECCCCEEEEeCCC-cceeeecccccCccEEEEECCCC--------------CEEEEEeC---------------
Confidence 3444555566799999986 56666667899999999998742 25554442
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe-cCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEec
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~-f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t 173 (701)
+++|++||+++++++.+++ +...|.+++|+ +++|++ +.+++|++||+.+++.+.++..
T Consensus 160 ------------------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 221 (420)
T 3vl1_A 160 ------------------DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 221 (420)
T ss_dssp ------------------TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB
T ss_pred ------------------CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec
Confidence 2789999999999999997 47899999997 456665 6688999999999998888876
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEE
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~ 253 (701)
+..... .... +++.... ...+...
T Consensus 222 ~~~~~~---------~v~~-------~~~~~~~--------------------------~~~~~~~-------------- 245 (420)
T 3vl1_A 222 KENPHD---------GVNS-------IALFVGT--------------------------DRQLHEI-------------- 245 (420)
T ss_dssp TTBTTC---------CEEE-------EEEEECC--------------------------CSSCGGG--------------
T ss_pred CCCCCC---------CccE-------EEEecCC--------------------------cceeeec--------------
Confidence 432110 1111 2222100 0000000
Q ss_pred cCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEee-cCCCCeEEEEEcCC
Q 005349 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPS 332 (701)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-~H~~~Is~laFSPd 332 (701)
....+. ...+.|+ | ..++.+..+|.|+|||+.+++.+..+. .|..+|.+++|+|+
T Consensus 246 ----~~~~v~--~~~~s~~---------------~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 301 (420)
T 3vl1_A 246 ----STSKKN--NLEFGTY---------------G---KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGN 301 (420)
T ss_dssp ----CCCCCC--TTCSSCT---------------T---EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSS
T ss_pred ----ccCccc--ceEEcCC---------------C---CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCC
Confidence 000000 0000111 1 134556789999999999998877775 68899999999999
Q ss_pred CC-EEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 333 GI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 333 G~-lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
|. +|++++.||+ |+|||+.++. ..+..+. +++...|.++.| +|+++|++++.|++|+||++..
T Consensus 302 ~~~~l~~g~~dg~-i~vwd~~~~~-------------~~~~~~~-~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 302 NANYIYAGYENGM-LAQWDLRSPE-------------CPVGEFL-INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp CTTEEEEEETTSE-EEEEETTCTT-------------SCSEEEE-ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred CCCEEEEEeCCCe-EEEEEcCCCc-------------Cchhhhh-ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence 99 9999999997 9999998751 1133443 334456888855 5889999999999999999987
Q ss_pred CC
Q 005349 412 LG 413 (701)
Q Consensus 412 ~g 413 (701)
..
T Consensus 366 ~~ 367 (420)
T 3vl1_A 366 PE 367 (420)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 39
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.6e-20 Score=200.51 Aligned_cols=276 Identities=11% Similarity=0.125 Sum_probs=179.5
Q ss_pred CcEEEEe-ccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLG-YRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g-~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
.++|+.| .++.++|||. .+.....+..|.++|.++.+.|+. .+|+.++.
T Consensus 120 ~~~l~~~~~dg~i~i~~~--~~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~-------------- 169 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNK--TGALLNVLNFHRAPIVSVKWNKDG--------------THIISMDV-------------- 169 (425)
T ss_dssp SSEEEEEETTSCEEEEET--TSCEEEEECCCCSCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred CCEEEEEeCCCeEEEEeC--CCCeeeeccCCCccEEEEEECCCC--------------CEEEEEec--------------
Confidence 4455555 4556999993 356667777899999999998742 24554442
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCC-C---------------EEEEEec--CCEEEEEeCCEEE
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRS-P---------------IYSVRCS--SRVVAICQAAQVH 158 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s-~---------------V~sV~~s--~~~LaVa~~~~I~ 158 (701)
+++|++||+++++.+..+.... . |.++.++ ..+++.+.++.|+
T Consensus 170 -------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 230 (425)
T 1r5m_A 170 -------------------ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIF 230 (425)
T ss_dssp -------------------TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEE
T ss_pred -------------------CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEE
Confidence 1569999999999999988743 3 8888885 3444456789999
Q ss_pred EEECCCCceeEEEecCCCccCCCCCCCCCcccceeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcce
Q 005349 159 CFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRV 236 (701)
Q Consensus 159 iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v 236 (701)
+||+.+.+.+..+..+.. .+..++++| ++|+.++.+ ..+
T Consensus 231 ~~d~~~~~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~d---------------------------~~i 271 (425)
T 1r5m_A 231 VYQITEKTPTGKLIGHHG------------PISVLEFNDTNKLLLSASDD---------------------------GTL 271 (425)
T ss_dssp EEETTCSSCSEEECCCSS------------CEEEEEEETTTTEEEEEETT---------------------------SCE
T ss_pred EEEcCCCceeeeeccCCC------------ceEEEEECCCCCEEEEEcCC---------------------------CEE
Confidence 999999988887765532 122355544 555554321 111
Q ss_pred eehhhhchhchhceeEEcCCccceecccccccccCCCCCcccc-ccCCCCCCCcccccccccCCCCeEEEEECCCCcEEE
Q 005349 237 AHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQS-AIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIA 315 (701)
Q Consensus 237 ~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~-a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~ 315 (701)
..|..+..+.+. .+ ......+.. .... .+.++.+..+|.|+|||+.+++.+.
T Consensus 272 ~i~d~~~~~~~~----~~----------------~~~~~~i~~~~~~~-------~~~l~~~~~d~~i~i~d~~~~~~~~ 324 (425)
T 1r5m_A 272 RIWHGGNGNSQN----CF----------------YGHSQSIVSASWVG-------DDKVISCSMDGSVRLWSLKQNTLLA 324 (425)
T ss_dssp EEECSSSBSCSE----EE----------------CCCSSCEEEEEEET-------TTEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEECCCCccce----Ee----------------cCCCccEEEEEECC-------CCEEEEEeCCCcEEEEECCCCcEeE
Confidence 111111100000 00 000000000 0000 1134567789999999999999999
Q ss_pred EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCC------CceeEEEEEeccCCcc-cEEEEEE
Q 005349 316 QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAG------TSYVHLYRLQRGLTNA-VIQDISF 388 (701)
Q Consensus 316 ~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~------~~~~~l~~l~rG~~~a-~I~~iaF 388 (701)
.+..|..+|.+++|+|+|++|++++.||+ |+|||+.++........+.. .....+..+ +++... .|.+++|
T Consensus 325 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~ 402 (425)
T 1r5m_A 325 LSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-QSSQDNDYIFDLSW 402 (425)
T ss_dssp EEECTTCCEEEEEECTTSSEEEEEETTSC-EEEEECHHHHC--------------CEECCEEEEE-CCTTCCCCEEEEEE
T ss_pred ecccCCccEEEEEEcCCCCEEEEEECCCe-EEEEECCCCccceeeeecccccccCcccchhhhhh-cCcccCCceEEEEc
Confidence 99999999999999999999999999998 89999976510000000000 000145555 444333 6999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecC
Q 005349 389 SDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 389 SpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
+||+++|++++.||+|+||++.
T Consensus 403 s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 403 NCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CTTSSEEEEEESSSCCEEEECC
T ss_pred cCCCceEEEEecCceEEEEeec
Confidence 9999999999999999999985
No 40
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.87 E-value=1.7e-20 Score=196.33 Aligned_cols=269 Identities=14% Similarity=0.167 Sum_probs=176.5
Q ss_pred cEEEEec-cCCeEEEEecCCCCe-eEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 19 RVLLLGY-RSGFQVWDVEEADNV-HDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 19 ~vL~~g~-~~g~qVwdv~~~~~~-~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
..|+.|. ++.++|||++..+.. ...+..|.++|.++.+.|+. .+|+.++.
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~s~~~-------------- 106 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG--------------SKVFTASC-------------- 106 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred eEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC--------------CEEEEEcC--------------
Confidence 5555555 556999999874433 36777899999999998743 24554442
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEe--c--CCEEEE-EeCCEEEEEECCCCceeEEE
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRC--S--SRVVAI-CQAAQVHCFDAATLEIEYAI 171 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~--s--~~~LaV-a~~~~I~iwDl~t~~~~~tl 171 (701)
+++|++||+++++++....+...|.+++| + +++|++ +.++.|++||+.+.+.+.++
T Consensus 107 -------------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 167 (368)
T 3mmy_A 107 -------------------DKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL 167 (368)
T ss_dssp -------------------TSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE
T ss_pred -------------------CCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE
Confidence 17899999999999998888999999999 5 345655 56899999999999988888
Q ss_pred ecCCCccCCCCCCCCCcccceeeeccceEEEc--CCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhc
Q 005349 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYS--GSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (701)
Q Consensus 172 ~t~~~~~~~~~~~~~~~~~~piAls~r~LAya--~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~ 249 (701)
..+.... .+...+..++.+ ...+..+ ..+.....
T Consensus 168 ~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~-----------------------------~~~~~~~~-- 203 (368)
T 3mmy_A 168 QLPERCY-------------CADVIYPMAVVATAERGLIVY-----------------------------QLENQPSE-- 203 (368)
T ss_dssp ECSSCEE-------------EEEEETTEEEEEEGGGCEEEE-----------------------------ECSSSCEE--
T ss_pred ecCCCce-------------EEEecCCeeEEEeCCCcEEEE-----------------------------Eeccccch--
Confidence 7543110 111112222211 1111111 00000000
Q ss_pred eeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC---cEEEEeecCCC----
Q 005349 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK---NVIAQFRAHKS---- 322 (701)
Q Consensus 250 gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~---~~i~~~~~H~~---- 322 (701)
...+...... ...+..+.++. ... ...++.+..+|.|+|||+... ..+..+++|..
T Consensus 204 -~~~~~~~~~~--~~~~~~~~~~~---------~~~-----~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 204 -FRRIESPLKH--QHRCVAIFKDK---------QNK-----PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp -EEECCCSCSS--CEEEEEEEECT---------TSC-----EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred -hhhccccccC--CCceEEEcccC---------CCC-----CCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence 0000000000 00000000000 000 011456778999999999987 66788888876
Q ss_pred --------CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCE
Q 005349 323 --------PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNW 394 (701)
Q Consensus 323 --------~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~ 394 (701)
+|.+++|+|+|++|++++.||+ |+|||+.++ .++..+. ++ ...|.+++|+|||++
T Consensus 267 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~--------------~~~~~~~-~~-~~~v~~~~~s~~g~~ 329 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDAR--------------TKLKTSE-QL-DQPISACCFNHNGNI 329 (368)
T ss_dssp -CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTTT--------------EEEEECC-CC-SSCEEEEEECTTSSC
T ss_pred ccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCCC--------------cEEEEec-CC-CCCceEEEECCCCCe
Confidence 7999999999999999999998 999999887 6666664 43 346999999999999
Q ss_pred EEEEeCCCcEEEEecCCC
Q 005349 395 IMISSSRGTSHLFAINPL 412 (701)
Q Consensus 395 lAsgS~dgTI~Iwdl~~~ 412 (701)
||+++.|+..+.|++-..
T Consensus 330 l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 330 FAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp EEEEECCCSTTCGGGCCT
T ss_pred EEEEecccccccccccCC
Confidence 999999997776665443
No 41
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.87 E-value=1.9e-19 Score=187.28 Aligned_cols=244 Identities=10% Similarity=0.153 Sum_probs=161.9
Q ss_pred CcEE-EEeccCCeEEEEecCCCC----eeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCcccc
Q 005349 18 RRVL-LLGYRSGFQVWDVEEADN----VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (701)
Q Consensus 18 ~~vL-~~g~~~g~qVwdv~~~~~----~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~ 92 (701)
.++| ..|.++.++|||+..... ....+..|.++|.++.+.|+. .+|+.++.
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg--------------~~l~s~~~---------- 106 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG--------------QFALSGSW---------- 106 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS--------------SEEEEEET----------
T ss_pred CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC--------------CEEEEEcc----------
Confidence 3445 456677899999976322 233455689999999998743 24544332
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCcee
Q 005349 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIE 168 (701)
Q Consensus 93 d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~ 168 (701)
++.|++|+...+........ ...+..+.++ .++|++ +.++.+++||+......
T Consensus 107 -----------------------d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~ 163 (340)
T 4aow_A 107 -----------------------DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY 163 (340)
T ss_dssp -----------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred -----------------------cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE
Confidence 27799999999998888776 4566666664 455555 67899999998765432
Q ss_pred EEEe-cCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhch
Q 005349 169 YAIL-TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (701)
Q Consensus 169 ~tl~-t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~l 247 (701)
.... .+. ..+ ..+++...
T Consensus 164 ~~~~~~~~---------------~~v----~~~~~~~~------------------------------------------ 182 (340)
T 4aow_A 164 TVQDESHS---------------EWV----SCVRFSPN------------------------------------------ 182 (340)
T ss_dssp EECSSSCS---------------SCE----EEEEECSC------------------------------------------
T ss_pred EEEecccc---------------Ccc----cceEEccC------------------------------------------
Confidence 2111 110 001 11222210
Q ss_pred hceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEE
Q 005349 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISAL 327 (701)
Q Consensus 248 a~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~l 327 (701)
.. ...++++..|+.|++||+.+++++..+.+|..+|.+|
T Consensus 183 -------------------------~~----------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~ 221 (340)
T 4aow_A 183 -------------------------SS----------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221 (340)
T ss_dssp -------------------------SS----------------SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred -------------------------CC----------------CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEE
Confidence 00 0012234568899999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEEcCCCCC-----CCCC------------ccCCCCceeEEEEEe---------------
Q 005349 328 CFDPSGILLVTASVQGHNINIFKIIPGIL-----GTSS------------ACDAGTSYVHLYRLQ--------------- 375 (701)
Q Consensus 328 aFSPdG~lLaTaS~dGt~I~Iwdl~~~~~-----~~~s------------~~~~~~~~~~l~~l~--------------- 375 (701)
+|+|+|++|++|+.||+ |+|||+.+... .... ..........++.++
T Consensus 222 ~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 300 (340)
T 4aow_A 222 TVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIST 300 (340)
T ss_dssp EECTTSSEEEEEETTCE-EEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC----
T ss_pred EECCCCCEEEEEeCCCe-EEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceee
Confidence 99999999999999997 99999887511 0000 000011112222221
Q ss_pred --ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 376 --RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 376 --rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
.+ +...|.+++|+|||++||+|+.||+|+|||+.++
T Consensus 301 ~~~~-h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 301 SSKA-EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp ---C-CCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred eccC-CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 12 2335999999999999999999999999999864
No 42
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.87 E-value=2.6e-20 Score=198.77 Aligned_cols=109 Identities=17% Similarity=0.287 Sum_probs=92.5
Q ss_pred cccCCCCeEEEEECCCCcEEEEeec---C---CCCeEEEEEcCCCCEEEEEeCC---CcEEEEEEcCCCCCCCCCccCCC
Q 005349 295 PDADNVGMVIVRDIVSKNVIAQFRA---H---KSPISALCFDPSGILLVTASVQ---GHNINIFKIIPGILGTSSACDAG 365 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~~i~~~~~---H---~~~Is~laFSPdG~lLaTaS~d---Gt~I~Iwdl~~~~~~~~s~~~~~ 365 (701)
+.+..+|.|+|||+.+++++..+.. | ..+|.+++|+|+|++|++++.| |. |+|||+.++
T Consensus 201 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~----------- 268 (397)
T 1sq9_A 201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC-ITLYETEFG----------- 268 (397)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEE-EEEEETTTC-----------
T ss_pred EEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCce-EEEEECCCC-----------
Confidence 3456789999999999999999999 9 9999999999999999999999 87 999999876
Q ss_pred CceeEEEEEeccC------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 005349 366 TSYVHLYRLQRGL------------TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 366 ~~~~~l~~l~rG~------------~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~ 419 (701)
..+..+. +. +...|.+++|+||+++|++++.||+|+|||+........+.
T Consensus 269 ---~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 269 ---ERIGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp ---CEEEEEC-BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ---cccceec-cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 4555553 30 23459999999999999999999999999998876555666
No 43
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.87 E-value=3.6e-20 Score=190.88 Aligned_cols=265 Identities=14% Similarity=0.123 Sum_probs=167.1
Q ss_pred CcEEEEe-ccCCeEEEEecCCCC---eeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccC
Q 005349 18 RRVLLLG-YRSGFQVWDVEEADN---VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (701)
Q Consensus 18 ~~vL~~g-~~~g~qVwdv~~~~~---~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d 93 (701)
.+.|+.| .++.++|||+..... ....+..|.++|.++++.|.. ...+|+.++.
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------d~~~l~s~~~----------- 79 (351)
T 3f3f_A 23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE------------YGRIIASASY----------- 79 (351)
T ss_dssp SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG------------GCSEEEEEET-----------
T ss_pred CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC------------CCCEEEEEcC-----------
Confidence 4445554 455699999986432 333445689999999998621 0125554442
Q ss_pred CcccccCCCCCCCCCCCCCCCCCcEEEEEECCCC---------cEEEEEe-cCCCEEEEEec----CCEEEE-EeCCEEE
Q 005349 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQ---------SYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVH 158 (701)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg---------~~v~tL~-f~s~V~sV~~s----~~~LaV-a~~~~I~ 158 (701)
+++|++||++++ +.+.++. +...|.+++|+ +++|++ +.++.|+
T Consensus 80 ----------------------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~ 137 (351)
T 3f3f_A 80 ----------------------DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILR 137 (351)
T ss_dssp ----------------------TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEE
T ss_pred ----------------------CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEE
Confidence 167999999988 5577775 46799999996 446665 6789999
Q ss_pred EEECCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceee
Q 005349 159 CFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAH 238 (701)
Q Consensus 159 iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~ 238 (701)
+||+.+.+.+..+..........-.. ......+ ..+++
T Consensus 138 iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~------------------------------------ 175 (351)
T 3f3f_A 138 LYDALEPSDLRSWTLTSEMKVLSIPP--ANHLQSD----FCLSW------------------------------------ 175 (351)
T ss_dssp EEECSSTTCTTCCEEEEEEESCSCCC--SSCSCCC----EEEEE------------------------------------
T ss_pred EecCCChHHhcccccccccccccccc--CCcccce----eEEEe------------------------------------
Confidence 99999876543322100000000000 0000000 00111
Q ss_pred hhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcE--EEE
Q 005349 239 YAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV--IAQ 316 (701)
Q Consensus 239 ~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~--i~~ 316 (701)
.|+. .....++.+..++.+.+|+...++. +..
T Consensus 176 -------------------------------~p~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (351)
T 3f3f_A 176 -------------------------------CPSR---------------FSPEKLAVSALEQAIIYQRGKDGKLHVAAK 209 (351)
T ss_dssp -------------------------------CCCS---------------SSCCEEEEEETTEEEEEEECTTSCEEEEEE
T ss_pred -------------------------------ccCC---------------CCCcEEEEecCCCcEEEEccCCCceeeeee
Confidence 1110 0011234456778888888887765 778
Q ss_pred eecCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEEcCCCCCCCCC-------------------ccC----------
Q 005349 317 FRAHKSPISALCFDPSG----ILLVTASVQGHNINIFKIIPGILGTSS-------------------ACD---------- 363 (701)
Q Consensus 317 ~~~H~~~Is~laFSPdG----~lLaTaS~dGt~I~Iwdl~~~~~~~~s-------------------~~~---------- 363 (701)
+.+|..+|.+++|+|+| ++|++++.||+ |+|||+..+...... ..+
T Consensus 210 ~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (351)
T 3f3f_A 210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKA 288 (351)
T ss_dssp CCCCCSCEEEEEECCCSSCSSEEEEEEETTSC-EEEEEEEECC-------------------------------------
T ss_pred cCCCCcceeEEEECCCCCCcceEEEEEcCCCe-EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceee
Confidence 88999999999999998 89999999998 999999764100000 000
Q ss_pred ---CCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 364 ---AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 364 ---~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
.......+..+ +++. ..|.+++|+||+++|++++.||+|+||++...+....+
T Consensus 289 ~~~~~~~~~~~~~~-~~h~-~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 289 ELQSNLQVELLSEH-DDHN-GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp --CCSEEEEEEEEE-CTTS-SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred eecccccccEEEEE-eccc-ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 00011334444 4543 45999999999999999999999999999876554444
No 44
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.2e-20 Score=195.52 Aligned_cols=230 Identities=10% Similarity=0.150 Sum_probs=151.2
Q ss_pred cEEEEeccCCeEEEEecCC------CCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCcccc
Q 005349 19 RVLLLGYRSGFQVWDVEEA------DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (701)
Q Consensus 19 ~vL~~g~~~g~qVwdv~~~------~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~ 92 (701)
.++..+.++.++|||++.. .+....+..|.++|.++.+.|+. .+|+.++.
T Consensus 72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g--------------~~las~s~---------- 127 (330)
T 2hes_X 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG--------------YYLATCSR---------- 127 (330)
T ss_dssp EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS--------------CEEEEEET----------
T ss_pred EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC--------------CEEEEEeC----------
Confidence 3444556777999999632 12344566789999999998743 25655542
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCC----cEEEEEe-cCCCEEEEEec--CCEEEE-EeCCEEEEEECCC
Q 005349 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQ----SYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAAT 164 (701)
Q Consensus 93 d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg----~~v~tL~-f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t 164 (701)
+++|+|||++.. +++.+++ +...|.+|+|+ +++|++ +.|++|++||..+
T Consensus 128 -----------------------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~ 184 (330)
T 2hes_X 128 -----------------------DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD 184 (330)
T ss_dssp -----------------------TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET
T ss_pred -----------------------CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 267999999432 5667775 46789999997 467776 5689999999876
Q ss_pred C--ceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhh
Q 005349 165 L--EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKE 242 (701)
Q Consensus 165 ~--~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~ 242 (701)
. +++.++..|.. ++ ..++|..+. .+
T Consensus 185 ~~~~~~~~~~~h~~---------------~v----~~~~~~~~~-------------------------~~--------- 211 (330)
T 2hes_X 185 DDWECVAVLNGHEG---------------TV----WSSDFDKTE-------------------------GV--------- 211 (330)
T ss_dssp TEEEEEEEECCCSS---------------CE----EEEEECCSS-------------------------SS---------
T ss_pred CCeeEEEEccCCCC---------------cE----EEEEecCCC-------------------------Ce---------
Confidence 5 45566655421 11 112332100 00
Q ss_pred chhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC--------cEE
Q 005349 243 SSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--------NVI 314 (701)
Q Consensus 243 ~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~--------~~i 314 (701)
..++++..||+|+|||+.++ .++
T Consensus 212 -------------------------------------------------~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 242 (330)
T 2hes_X 212 -------------------------------------------------FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE 242 (330)
T ss_dssp -------------------------------------------------CEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred -------------------------------------------------eEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence 01234567899999998764 455
Q ss_pred EEeec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC--C
Q 005349 315 AQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD--D 391 (701)
Q Consensus 315 ~~~~~-H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp--D 391 (701)
..+.. |..+|.+|+|++++ +||+++.||+ |+|||..++ ....+.....++....|.+++|+| |
T Consensus 243 ~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~~------------~~~~~~~~~~~h~~~~v~~v~~~~~~~ 308 (330)
T 2hes_X 243 AILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVDG------------EWKVFAKRALCHGVYEINVVKWLELNG 308 (330)
T ss_dssp EECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEETT------------EEEEEEEESCTTTTSCEEEEEEC----
T ss_pred eecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCCC------------ceEEEeccccccccceEEEEEEecCCC
Confidence 66665 99999999999776 7999999998 899998765 112233333455433699999999 7
Q ss_pred CCEEEEEeCCCcEEEEecCC
Q 005349 392 SNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 392 g~~lAsgS~dgTI~Iwdl~~ 411 (701)
+++||+|+.||+|+||++..
T Consensus 309 ~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 309 KTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -CCEEEEETTSEEEEEEC--
T ss_pred ceEEEEecCCCcEEEEEecc
Confidence 99999999999999999864
No 45
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.87 E-value=9.4e-20 Score=193.78 Aligned_cols=247 Identities=14% Similarity=0.168 Sum_probs=167.5
Q ss_pred CcEEEE-eccCCeEEEEecCCCCeeEEe------------eeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCC
Q 005349 18 RRVLLL-GYRSGFQVWDVEEADNVHDLV------------SRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGS 84 (701)
Q Consensus 18 ~~vL~~-g~~~g~qVwdv~~~~~~~elv------------s~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~ 84 (701)
.+.|+. +.++.++|||++.......+. ..|.++|.++++.|.. ..+|+.++.
T Consensus 56 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~l~s~~~-- 120 (408)
T 4a11_B 56 GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD-------------TGMFTSSSF-- 120 (408)
T ss_dssp CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC-------------TTCEEEEET--
T ss_pred CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC-------------CcEEEEEeC--
Confidence 344554 556669999998743333222 1388899999987621 124444432
Q ss_pred CcCCccccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEecC-----CEEEE-EeCCEEE
Q 005349 85 RSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCSS-----RVVAI-CQAAQVH 158 (701)
Q Consensus 85 ~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s~-----~~LaV-a~~~~I~ 158 (701)
+++|++||+++++.+..+.+...+..+.+.+ .++++ ..++.|+
T Consensus 121 -------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (408)
T 4a11_B 121 -------------------------------DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQ 169 (408)
T ss_dssp -------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEE
T ss_pred -------------------------------CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEE
Confidence 2789999999999999999999999999963 25665 6788999
Q ss_pred EEECCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceee
Q 005349 159 CFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAH 238 (701)
Q Consensus 159 iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~ 238 (701)
+||+.+++.+..+..+.. ++ .-+++.. + +..
T Consensus 170 ~~d~~~~~~~~~~~~~~~---------------~v----~~~~~~~-------------~--------------~~~--- 200 (408)
T 4a11_B 170 LCDLKSGSCSHILQGHRQ---------------EI----LAVSWSP-------------R--------------YDY--- 200 (408)
T ss_dssp EEESSSSCCCEEECCCCS---------------CE----EEEEECS-------------S--------------CTT---
T ss_pred EEeCCCcceeeeecCCCC---------------cE----EEEEECC-------------C--------------CCc---
Confidence 999999988877765421 11 1123321 0 000
Q ss_pred hhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc-EEEEe
Q 005349 239 YAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN-VIAQF 317 (701)
Q Consensus 239 ~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~-~i~~~ 317 (701)
.++++..+|.|++||+.++. ++..+
T Consensus 201 ------------------------------------------------------ll~~~~~dg~i~i~d~~~~~~~~~~~ 226 (408)
T 4a11_B 201 ------------------------------------------------------ILATASADSRVKLWDVRRASGCLITL 226 (408)
T ss_dssp ------------------------------------------------------EEEEEETTSCEEEEETTCSSCCSEEC
T ss_pred ------------------------------------------------------EEEEEcCCCcEEEEECCCCCcccccc
Confidence 12234567899999998765 44444
Q ss_pred ---------------ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCC--------Cc-------------
Q 005349 318 ---------------RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTS--------SA------------- 361 (701)
Q Consensus 318 ---------------~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~--------s~------------- 361 (701)
.+|..+|.+++|+|+|++|++++.||+ |++||+.++..... ..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (408)
T 4a11_B 227 DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSS 305 (408)
T ss_dssp CTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSS
T ss_pred cccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-EEEEECCCCccceeccccccccccccceeEEecCCCc
Confidence 679999999999999999999999998 89999987521000 00
Q ss_pred ---cCCC---------CceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCce
Q 005349 362 ---CDAG---------TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSV 416 (701)
Q Consensus 362 ---~~~~---------~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~ 416 (701)
.... .....+..+ .++ ...|.+++|+||+++|++++.||+|+||++.......
T Consensus 306 ~~~~~~~~~~i~v~d~~~~~~~~~~-~~~-~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 306 EFVFVPYGSTIAVYTVYSGEQITML-KGH-YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp CEEEEEETTEEEEEETTTCCEEEEE-CCC-SSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred eEEEEecCCEEEEEECcCCcceeee-ccC-CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 0000 111233344 343 3459999999999999999999999999998765443
No 46
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.87 E-value=1.4e-19 Score=198.50 Aligned_cols=245 Identities=16% Similarity=0.212 Sum_probs=169.7
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
..++..+.++.++|||+.+ ++....+..|.++|.++++.|+. +|+.++.
T Consensus 133 ~~l~sgs~dg~i~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~~---------------~l~s~s~--------------- 181 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHGG---------------ILVSGST--------------- 181 (464)
T ss_dssp TEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECSTT---------------EEEEEET---------------
T ss_pred CEEEEEcCCCcEEEEECCC-CcEEEEEeCCCcCEEEEEEcCCC---------------EEEEEeC---------------
Confidence 4455556667799999987 55666667899999999987531 4443332
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe-cCCCEEEEEec----CCEEEE-EeCCEEEEEECCCCceeEEE
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLEIEYAI 171 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~-f~s~V~sV~~s----~~~LaV-a~~~~I~iwDl~t~~~~~tl 171 (701)
+++|++||+++++++.++. +...|.+++++ +++|++ +.+++|++||+.+.+.....
T Consensus 182 ------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 243 (464)
T 3v7d_B 182 ------------------DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243 (464)
T ss_dssp ------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---
T ss_pred ------------------CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccc
Confidence 2679999999999999998 57899999996 255555 67899999999987654333
Q ss_pred ecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhcee
Q 005349 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (701)
Q Consensus 172 ~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl 251 (701)
..... . +.. ... |.. ....+.
T Consensus 244 ~~~~~---~-----------~~~------~~~-------------~~~------------~~~~~~-------------- 264 (464)
T 3v7d_B 244 GEEHD---Y-----------PLV------FHT-------------PEE------------NPYFVG-------------- 264 (464)
T ss_dssp ---CC---S-----------SEE------ESC-------------GGG------------CTTEEE--------------
T ss_pred cccCC---c-----------ceE------eec-------------cCC------------CeEEEE--------------
Confidence 21100 0 010 000 000 000000
Q ss_pred EEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC
Q 005349 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (701)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP 331 (701)
...+... .+....+. ...++.+..||.|++||+.+++++..+.+|..+|.+++|+|
T Consensus 265 ~~~~~~~-----------------~v~~~~~~-------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 320 (464)
T 3v7d_B 265 VLRGHMA-----------------SVRTVSGH-------GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 320 (464)
T ss_dssp EECCCSS-----------------CEEEEEEE-------TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET
T ss_pred EccCccc-----------------eEEEEcCC-------CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC
Confidence 0000000 00000000 11345667899999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 332 dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
+|++|++++.||+ |+|||+.++ ..+.++. ++ ...|.+++|+ +++|++++.||+|+|||+..
T Consensus 321 ~~~~l~sg~~dg~-i~vwd~~~~--------------~~~~~~~-~h-~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 321 ERKRCISASMDTT-IRIWDLENG--------------ELMYTLQ-GH-TALVGLLRLS--DKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp TTTEEEEEETTSC-EEEEETTTT--------------EEEEEEC-CC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEeCCCc-EEEEECCCC--------------cEEEEEe-CC-CCcEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence 9999999999998 999999887 6677763 44 3469999997 58999999999999999987
Q ss_pred CC
Q 005349 412 LG 413 (701)
Q Consensus 412 ~g 413 (701)
..
T Consensus 382 ~~ 383 (464)
T 3v7d_B 382 YS 383 (464)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.87 E-value=1.9e-20 Score=201.77 Aligned_cols=185 Identities=11% Similarity=0.141 Sum_probs=140.6
Q ss_pred cEEEEEECCCCcEEEEE-ecCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHML-KFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL-~f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
++|++||+++++++..+ .+...|.+++|+ +++|++ +.+++|++||+.+++.+.++..|...
T Consensus 119 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~--------------- 183 (420)
T 3vl1_A 119 GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT--------------- 183 (420)
T ss_dssp SCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC---------------
T ss_pred CCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc---------------
Confidence 66999999999998887 457899999996 456766 56889999999999988888765321
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
+ .-+++.. + +.
T Consensus 184 v----~~~~~~~-------------~--------------~~-------------------------------------- 194 (420)
T 3vl1_A 184 V----TDIAIID-------------R--------------GR-------------------------------------- 194 (420)
T ss_dssp E----EEEEEET-------------T--------------TT--------------------------------------
T ss_pred E----EEEEEcC-------------C--------------CC--------------------------------------
Confidence 1 1123321 0 00
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecC---CCCe---------------------EEEE
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH---KSPI---------------------SALC 328 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H---~~~I---------------------s~la 328 (701)
.++++..||.|+|||+.+++.+..+..| ...| .+++
T Consensus 195 --------------------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 195 --------------------NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp --------------------EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred --------------------EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 1223456889999999999999998853 3444 4455
Q ss_pred EcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 005349 329 FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLF 407 (701)
Q Consensus 329 FSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~-~lAsgS~dgTI~Iw 407 (701)
|+|+|++|++++.||+ |+|||+.++ ..+..+..++ ...|.+++|+|+++ +|++++.||+|+||
T Consensus 255 ~s~~~~~l~~~~~dg~-i~i~d~~~~--------------~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~g~~dg~i~vw 318 (420)
T 3vl1_A 255 FGTYGKYVIAGHVSGV-ITVHNVFSK--------------EQTIQLPSKF-TCSCNSLTVDGNNANYIYAGYENGMLAQW 318 (420)
T ss_dssp SSCTTEEEEEEETTSC-EEEEETTTC--------------CEEEEECCTT-SSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred EcCCCCEEEEEcCCCe-EEEEECCCC--------------ceeEEccccc-CCCceeEEEeCCCCCEEEEEeCCCeEEEE
Confidence 6899999999999998 899999876 5556665443 34699999999999 99999999999999
Q ss_pred ecCCCCC-ceeecCC
Q 005349 408 AINPLGG-SVNFQPT 421 (701)
Q Consensus 408 dl~~~g~-~~~~~~H 421 (701)
|+..... ...+..|
T Consensus 319 d~~~~~~~~~~~~~~ 333 (420)
T 3vl1_A 319 DLRSPECPVGEFLIN 333 (420)
T ss_dssp ETTCTTSCSEEEEES
T ss_pred EcCCCcCchhhhhcc
Confidence 9988655 3456554
No 48
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.86 E-value=3.8e-20 Score=197.52 Aligned_cols=234 Identities=15% Similarity=0.149 Sum_probs=166.9
Q ss_pred cEEEEeccCCeEEEEecCCCCe-----eEEeeec-----cCCEEEEEEeeCCCCCccccCccccCCCE-EEEEeCCCCcC
Q 005349 19 RVLLLGYRSGFQVWDVEEADNV-----HDLVSRY-----DGPVSFMQMLPRPITSKRSRDKFAEVRPL-LVFCADGSRSC 87 (701)
Q Consensus 19 ~vL~~g~~~g~qVwdv~~~~~~-----~elvs~~-----dG~V~~l~~lp~p~~~~~~~d~f~~~rpl-lavv~~g~~~~ 87 (701)
.++..+.++.+++||++.. .. ...+..| ++.|.++.+.+.+. ....+ |++++.
T Consensus 83 ~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~~l~~~~~----- 146 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITRE-DETKKVIFEKLDLLDSDMKKHSFWALKWGASND----------RLLSHRLVATDV----- 146 (397)
T ss_dssp EEEEEETTSCEEEEEEEEC-TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--------------CEEEEEEET-----
T ss_pred EEEEEcCCCCEEEEEccCC-cccccccceeecccccccCCCcEEEEEEeeccC----------CCCceEEEEEeC-----
Confidence 4445556677999999974 33 4445556 59999999983210 00134 554432
Q ss_pred CccccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCC------CcEEE-----EEe--------cCCCEEEEEecCC-
Q 005349 88 GTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRS------QSYVH-----MLK--------FRSPIYSVRCSSR- 147 (701)
Q Consensus 88 ~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~t------g~~v~-----tL~--------f~s~V~sV~~s~~- 147 (701)
++.|++||+++ ++.+. ++. +...|.+++|++.
T Consensus 147 ----------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 198 (397)
T 1sq9_A 147 ----------------------------KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG 198 (397)
T ss_dssp ----------------------------TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred ----------------------------CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc
Confidence 16699999999 77766 664 3678999999742
Q ss_pred EEEE-EeCCEEEEEECCCCceeEEEec---CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccc
Q 005349 148 VVAI-CQAAQVHCFDAATLEIEYAILT---NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQS 223 (701)
Q Consensus 148 ~LaV-a~~~~I~iwDl~t~~~~~tl~t---~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s 223 (701)
+|++ +.++.|++||+.+.+.+..+.. +... ..++ ..+++.. +
T Consensus 199 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~------------~~~i----~~i~~~~-------------~----- 244 (397)
T 1sq9_A 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINN------------SNSI----RSVKFSP-------------Q----- 244 (397)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCC---CC------------CCCE----EEEEECS-------------S-----
T ss_pred eEEEEeCCCcEEEEECCCCceeEEEecccccccc------------CCcc----ceEEECC-------------C-----
Confidence 6666 4578999999999988887765 3100 0011 1223321 0
Q ss_pred cccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCC---
Q 005349 224 RSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNV--- 300 (701)
Q Consensus 224 ~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~d--- 300 (701)
+. .++.+..+
T Consensus 245 ---------~~----------------------------------------------------------~l~~~~~d~~~ 257 (397)
T 1sq9_A 245 ---------GS----------------------------------------------------------LLAIAHDSNSF 257 (397)
T ss_dssp ---------TT----------------------------------------------------------EEEEEEEETTE
T ss_pred ---------CC----------------------------------------------------------EEEEEecCCCC
Confidence 00 11223445
Q ss_pred CeEEEEECCCCcEEEEeec-------------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCc
Q 005349 301 GMVIVRDIVSKNVIAQFRA-------------HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 367 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~-------------H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~ 367 (701)
|.|+|||+.+++++..+.. |..+|.+++|+|+|++|++++.||+ |+|||+.++
T Consensus 258 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~------------- 323 (397)
T 1sq9_A 258 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTK------------- 323 (397)
T ss_dssp EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTT-------------
T ss_pred ceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCC-------------
Confidence 8999999999999999998 9999999999999999999999997 999999876
Q ss_pred eeEEEEEec-----cC--------------CcccEEEEEEcCCC----------CEEEEEeCCCcEEEEecCCC
Q 005349 368 YVHLYRLQR-----GL--------------TNAVIQDISFSDDS----------NWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 368 ~~~l~~l~r-----G~--------------~~a~I~~iaFSpDg----------~~lAsgS~dgTI~Iwdl~~~ 412 (701)
..+..+.. ++ +...|.+++|+||+ ++|++++.||+|+||++...
T Consensus 324 -~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 324 -ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp -EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred -ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 56666641 22 13569999999999 79999999999999999753
No 49
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4e-19 Score=182.28 Aligned_cols=260 Identities=14% Similarity=0.213 Sum_probs=173.0
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.++..+.++.++|||++. +.....+..|.+.|.++.+.|+. .+|+.++.
T Consensus 30 ~~l~s~~~dg~v~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~--------------~~l~~~~~--------------- 79 (313)
T 3odt_A 30 SKVASVSRDGTVRLWSKDD-QWLGTVVYTGQGFLNSVCYDSEK--------------ELLLFGGK--------------- 79 (313)
T ss_dssp TEEEEEETTSEEEEEEESS-SEEEEEEEECSSCEEEEEEETTT--------------TEEEEEET---------------
T ss_pred CEEEEEEcCCcEEEEECCC-CEEEEEeecCCccEEEEEECCCC--------------CEEEEecC---------------
Confidence 3444445555699999976 56677777899999999998742 25555442
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCC---cEEEEEe-cCCCEEEEEecCCEEEE-EeCCEEEEEECCCCceeEEEe
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQ---SYVHMLK-FRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAIL 172 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg---~~v~tL~-f~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t~~~~~tl~ 172 (701)
++.|++|++... +.+.++. +...|.++.+++++|++ +.++.|++|| +.+....+.
T Consensus 80 ------------------dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 80 ------------------DTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp ------------------TSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred ------------------CCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecc
Confidence 156999998665 5566665 46799999999887777 5688999999 566666666
Q ss_pred cCCCccCCCCCCCCCcccceeee---ccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhc
Q 005349 173 TNPIVMGHPSAGGIGIGYGPLAV---GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (701)
Q Consensus 173 t~~~~~~~~~~~~~~~~~~piAl---s~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~ 249 (701)
.+... ...+++ ...+|+.++.+ ..+..|. ..+
T Consensus 140 ~~~~~------------v~~~~~~~~~~~~l~~~~~d---------------------------~~i~i~d--~~~---- 174 (313)
T 3odt_A 140 AHNAS------------VWDAKVVSFSENKFLTASAD---------------------------KTIKLWQ--NDK---- 174 (313)
T ss_dssp CCSSC------------EEEEEEEETTTTEEEEEETT---------------------------SCEEEEE--TTE----
T ss_pred cCCCc------------eeEEEEccCCCCEEEEEECC---------------------------CCEEEEe--cCc----
Confidence 55321 111222 12344433211 1111111 000
Q ss_pred eeEEcCCccceecccccccccCCCCCcccc-ccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEE
Q 005349 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQS-AIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALC 328 (701)
Q Consensus 250 gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~-a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~la 328 (701)
.+..+... ....+.. +.. ..+.++.+..+|.|++||+.+++++..+++|..+|.+++
T Consensus 175 ~~~~~~~~---------------~~~~i~~~~~~-------~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 232 (313)
T 3odt_A 175 VIKTFSGI---------------HNDVVRHLAVV-------DDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK 232 (313)
T ss_dssp EEEEECSS---------------CSSCEEEEEEE-------ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred eEEEEecc---------------CcccEEEEEEc-------CCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE
Confidence 00000000 0000000 000 012356677899999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005349 329 FDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 329 FSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwd 408 (701)
|+|+| .|++++.||+ |+|||+.++ ..+..+. ++ ...|.+++|+||++ +++++.||+|+||+
T Consensus 233 ~~~~~-~l~~~~~dg~-v~iwd~~~~--------------~~~~~~~-~~-~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 233 LLPNG-DIVSCGEDRT-VRIWSKENG--------------SLKQVIT-LP-AISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp ECTTS-CEEEEETTSE-EEEECTTTC--------------CEEEEEE-CS-SSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred EecCC-CEEEEecCCE-EEEEECCCC--------------ceeEEEe-cc-CceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 99999 5889999997 999999887 5555654 33 34699999999999 55799999999999
Q ss_pred cCCCC
Q 005349 409 INPLG 413 (701)
Q Consensus 409 l~~~g 413 (701)
+.+..
T Consensus 294 ~~~~~ 298 (313)
T 3odt_A 294 QEKSR 298 (313)
T ss_dssp SCGGG
T ss_pred CCCCc
Confidence 98643
No 50
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.86 E-value=1.2e-19 Score=198.60 Aligned_cols=219 Identities=14% Similarity=0.254 Sum_probs=166.1
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.++..+.++.++|||+++ ++....+..|.++|.++.+ ++ .+|+.++.
T Consensus 144 ~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~--~~--------------~~l~sg~~--------------- 191 (435)
T 1p22_A 144 QKIVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLCLQY--DE--------------RVIITGSS--------------- 191 (435)
T ss_dssp SEEEEEESSSCEEEEESSS-CCEEEEECCCSSCEEEEEC--CS--------------SEEEEEET---------------
T ss_pred CEEEEEeCCCeEEEEeCCC-CeEEEEEcCCCCcEEEEEE--CC--------------CEEEEEcC---------------
Confidence 4455556677799999987 5677777789999998876 11 24554432
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecCCEEEE-EeCCEEEEEECCCCceeE---EEe
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEY---AIL 172 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t~~~~~---tl~ 172 (701)
+++|++||+++++++.++.. ...|.+++++++.|++ +.++.|++||+.+.+... .+.
T Consensus 192 ------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 253 (435)
T 1p22_A 192 ------------------DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV 253 (435)
T ss_dssp ------------------TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEEC
T ss_pred ------------------CCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEec
Confidence 16799999999999999975 6789999999887776 678999999999876542 222
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeE
Q 005349 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (701)
Q Consensus 173 t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~ 252 (701)
.+.. ++ ..+++.
T Consensus 254 ~~~~---------------~v----~~~~~~------------------------------------------------- 265 (435)
T 1p22_A 254 GHRA---------------AV----NVVDFD------------------------------------------------- 265 (435)
T ss_dssp CCSS---------------CE----EEEEEE-------------------------------------------------
T ss_pred CCCC---------------cE----EEEEeC-------------------------------------------------
Confidence 2210 01 001110
Q ss_pred EcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCC
Q 005349 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (701)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd 332 (701)
...++++..||.|+|||+.+++.+..+.+|..+|.+++| +
T Consensus 266 --------------------------------------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~ 305 (435)
T 1p22_A 266 --------------------------------------DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--R 305 (435)
T ss_dssp --------------------------------------TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--E
T ss_pred --------------------------------------CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--C
Confidence 001233456899999999999999999999999999999 5
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 333 G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
+.+|++++.||+ |+|||+.++ .++..+. ++. ..|.+++| |+++|++|+.||+|+|||+...
T Consensus 306 ~~~l~~g~~dg~-i~iwd~~~~--------------~~~~~~~-~h~-~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 306 DRLVVSGSSDNT-IRLWDIECG--------------ACLRVLE-GHE-ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp TTEEEEEETTSC-EEEEETTTC--------------CEEEEEC-CCS-SCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred CCEEEEEeCCCe-EEEEECCCC--------------CEEEEEe-CCc-CcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 789999999998 999999887 5666663 443 45999999 8999999999999999999654
Q ss_pred C
Q 005349 413 G 413 (701)
Q Consensus 413 g 413 (701)
.
T Consensus 367 ~ 367 (435)
T 1p22_A 367 L 367 (435)
T ss_dssp T
T ss_pred C
Confidence 3
No 51
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.86 E-value=1.4e-19 Score=198.12 Aligned_cols=301 Identities=15% Similarity=0.166 Sum_probs=187.0
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.++..+.++.++|||+.+ ++....+..|.++|.++.+.++-..+. ..|. .+-++.-.+.........+...
T Consensus 130 ~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~l~s~-~~dg------~i~vwd~~~~~~~~~~~~h~~~ 201 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVT-GKCLRTLVGHTGGVWSSQMRDNIIISG-STDR------TLKVWNAETGECIHTLYGHTST 201 (445)
T ss_dssp TEEEEEETTSCEEEEETTT-CCEEEECCCCSSCEEEEEEETTEEEEE-ETTS------CEEEEETTTTEEEEEECCCSSC
T ss_pred CEEEEEECCCcEEEEECCC-CcEEEEEcCCCCCEEEEEecCCEEEEE-eCCC------eEEEEECCcCcEEEEECCCCCc
Confidence 7888899999999999888 456666777888888888766532111 1110 1111211000000000000000
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecCCEEEE-EeCCEEEEEECCCCceeEEEecCC
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNP 175 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~ 175 (701)
+..... ..........+++|++||+++++++.++.. ...|.++.+++++|++ +.++.|++||+.+++.+.++..+.
T Consensus 202 v~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 279 (445)
T 2ovr_B 202 VRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 279 (445)
T ss_dssp EEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS
T ss_pred EEEEEe--cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCC
Confidence 000000 000000112458899999999999998875 6789999998777766 568899999999998888887653
Q ss_pred CccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEc-
Q 005349 176 IVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL- 254 (701)
Q Consensus 176 ~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~l- 254 (701)
. ....+++..++|+.++.+ ..+..|..+..+.+. .+
T Consensus 280 ~------------~v~~~~~~~~~l~~~~~d---------------------------~~i~i~d~~~~~~~~----~~~ 316 (445)
T 2ovr_B 280 N------------RVYSLQFDGIHVVSGSLD---------------------------TSIRVWDVETGNCIH----TLT 316 (445)
T ss_dssp S------------CEEEEEECSSEEEEEETT---------------------------SCEEEEETTTCCEEE----EEC
T ss_pred C------------ceEEEEECCCEEEEEeCC---------------------------CeEEEEECCCCCEEE----EEc
Confidence 2 122344445555544321 112212111111100 00
Q ss_pred CCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeec---CCCCeEEEEEcC
Q 005349 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA---HKSPISALCFDP 331 (701)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~---H~~~Is~laFSP 331 (701)
++. ..+..... ....++.+..||.|++||+.+++++..+.. |..+|.+++|+
T Consensus 317 ~~~-----------------~~v~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~- 371 (445)
T 2ovr_B 317 GHQ-----------------SLTSGMEL-------KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN- 371 (445)
T ss_dssp CCC-----------------SCEEEEEE-------ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-
T ss_pred CCc-----------------ccEEEEEE-------eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC-
Confidence 000 00000000 012455677899999999999999999986 88999999996
Q ss_pred CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe---ccCCcccEEEEEEcCCCCEEEEEeCCCc----E
Q 005349 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---RGLTNAVIQDISFSDDSNWIMISSSRGT----S 404 (701)
Q Consensus 332 dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~---rG~~~a~I~~iaFSpDg~~lAsgS~dgT----I 404 (701)
+.+|++++.||+ |+|||+.++ ..+..+. .+.+...|++++|+||+.+||+++.||+ +
T Consensus 372 -~~~l~s~~~dg~-v~iwd~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l 435 (445)
T 2ovr_B 372 -KNFVITSSDDGT-VKLWDLKTG--------------EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 435 (445)
T ss_dssp -SSEEEEEETTSE-EEEEETTTC--------------CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEE
T ss_pred -CCEEEEEeCCCe-EEEEECCCC--------------ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEE
Confidence 689999999997 999999887 4555552 2233456999999999999999999998 9
Q ss_pred EEEecCCC
Q 005349 405 HLFAINPL 412 (701)
Q Consensus 405 ~Iwdl~~~ 412 (701)
+|||++..
T Consensus 436 ~v~df~~~ 443 (445)
T 2ovr_B 436 LVLDFDVD 443 (445)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999764
No 52
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.86 E-value=1.8e-19 Score=191.86 Aligned_cols=237 Identities=12% Similarity=0.168 Sum_probs=159.2
Q ss_pred CcEEEEeccCCeEEEEecCCC-CeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGYRSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~-~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
+.++..+.++.++|||++... .+...+..|.++|.++.+.|+. .+|+.++.
T Consensus 74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~--------------~~l~s~s~-------------- 125 (345)
T 3fm0_A 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG--------------NLLATCSR-------------- 125 (345)
T ss_dssp SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC--------------CEEEEEEC--------------
Confidence 445555667789999998632 2344566789999999998743 25655542
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCc---EEEEEe-cCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCc--e
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQS---YVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLE--I 167 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~---~v~tL~-f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~--~ 167 (701)
+++|++||+++++ ++..+. +...|.+++|+ +++|++ +.|++|++||+.+.+ +
T Consensus 126 -------------------D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~ 186 (345)
T 3fm0_A 126 -------------------DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVC 186 (345)
T ss_dssp -------------------TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEE
T ss_pred -------------------CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEE
Confidence 1679999998874 345554 35689999997 466766 668999999998764 3
Q ss_pred eEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhch
Q 005349 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (701)
Q Consensus 168 ~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~l 247 (701)
..++..|.. ++ .-|+|.. + |.
T Consensus 187 ~~~~~~h~~---------------~v----~~l~~sp-------------~--------------g~------------- 207 (345)
T 3fm0_A 187 CATLEGHES---------------TV----WSLAFDP-------------S--------------GQ------------- 207 (345)
T ss_dssp EEEECCCSS---------------CE----EEEEECT-------------T--------------SS-------------
T ss_pred EEEecCCCC---------------ce----EEEEECC-------------C--------------CC-------------
Confidence 345544421 11 1123321 0 00
Q ss_pred hceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCC---------------Cc
Q 005349 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS---------------KN 312 (701)
Q Consensus 248 a~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s---------------~~ 312 (701)
.++++..||+|+|||... .+
T Consensus 208 ---------------------------------------------~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 208 ---------------------------------------------RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp ---------------------------------------------EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred ---------------------------------------------EEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 123345678888888532 13
Q ss_pred EEEEeec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCC
Q 005349 313 VIAQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 391 (701)
Q Consensus 313 ~i~~~~~-H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpD 391 (701)
++..+.+ |...|.+++|+|++.+||+++.|++ |+||+..+..... .........+.++|. ..|.+|+|+|+
T Consensus 243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~~~~------~~~~~~~~~~~~~h~-~~V~~v~~~p~ 314 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSDPQ------QPTFSLTAHLHQAHS-QDVNCVAWNPK 314 (345)
T ss_dssp EEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTSCTT------SCCEEEEEEETTSSS-SCEEEEEECSS
T ss_pred eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCCCcc------eeeEEEEeeeccccc-CcEeEeEEeCC
Confidence 4556665 8999999999999999999999998 9999987641100 011112223334554 45999999999
Q ss_pred C-CEEEEEeCCCcEEEEecCCCC
Q 005349 392 S-NWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 392 g-~~lAsgS~dgTI~Iwdl~~~g 413 (701)
+ .+||++|.||+|+||++....
T Consensus 315 ~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 315 EPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp STTEEEEEETTSCEEEEEECC--
T ss_pred CceEEEEcCCCCcEEEEEecCCC
Confidence 8 599999999999999997654
No 53
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2e-19 Score=190.39 Aligned_cols=233 Identities=10% Similarity=0.136 Sum_probs=156.2
Q ss_pred cEEEEeccCCeEEEEecCCC-CeeEEe-ee-ccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 005349 19 RVLLLGYRSGFQVWDVEEAD-NVHDLV-SR-YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (701)
Q Consensus 19 ~vL~~g~~~g~qVwdv~~~~-~~~elv-s~-~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~ 95 (701)
.++..+.++.++|||+.... .....+ .. |.++|+++++.|+. .+|+.++.
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~--------------~~las~s~------------- 78 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT--------------SLLAAGSF------------- 78 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS--------------SEEEEEET-------------
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC--------------CEEEEEeC-------------
Confidence 33444556679999998632 233334 23 88999999998742 35655542
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEECCC-------CcEEEEEe-cCCCEEEEEec--CCEEEE-EeCCEEEEEECCC
Q 005349 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRS-------QSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAAT 164 (701)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~~~~~tVriWdl~t-------g~~v~tL~-f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t 164 (701)
+++|+|||++. .+++.+++ +...|.+|+|+ +++|++ +.|++|++||+.+
T Consensus 79 --------------------D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 79 --------------------DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp --------------------TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred --------------------CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 26799999953 45667775 46799999997 467776 5689999999953
Q ss_pred C----ceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehh
Q 005349 165 L----EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYA 240 (701)
Q Consensus 165 ~----~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a 240 (701)
. +++.++..|.. ++ ..++|.. + +
T Consensus 139 ~~~~~~~~~~~~~h~~---------------~v----~~v~~~p-------------~--------------~------- 165 (330)
T 2hes_X 139 SGEEYECISVLQEHSQ---------------DV----KHVIWHP-------------S--------------E------- 165 (330)
T ss_dssp TCCCCEEEEEECCCSS---------------CE----EEEEECS-------------S--------------S-------
T ss_pred CCCCeEEEEEeccCCC---------------ce----EEEEECC-------------C--------------C-------
Confidence 2 34444444421 01 1123321 0 0
Q ss_pred hhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC--cEEEEee
Q 005349 241 KESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFR 318 (701)
Q Consensus 241 ~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~--~~i~~~~ 318 (701)
..++++..||+|+|||+.++ +++..+.
T Consensus 166 ---------------------------------------------------~~l~s~s~D~~i~iW~~~~~~~~~~~~~~ 194 (330)
T 2hes_X 166 ---------------------------------------------------ALLASSSYDDTVRIWKDYDDDWECVAVLN 194 (330)
T ss_dssp ---------------------------------------------------SEEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred ---------------------------------------------------CEEEEEcCCCeEEEEECCCCCeeEEEEcc
Confidence 02334567899999999876 6888999
Q ss_pred cCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEE
Q 005349 319 AHKSPISALCFDPS--GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIM 396 (701)
Q Consensus 319 ~H~~~Is~laFSPd--G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lA 396 (701)
+|...|.+++|+|+ +.+|+|++.||+ |+|||+..+.... .....++..+. +.+...|++++|++++ +||
T Consensus 195 ~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~~------~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~ 265 (330)
T 2hes_X 195 GHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDEDD------QQEWVCEAILP-DVHKRQVYNVAWGFNG-LIA 265 (330)
T ss_dssp CCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTTS------CEEEEEEEECC-SCCSSCEEEEEECTTS-CEE
T ss_pred CCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCccc------cceeEEeeecc-cccccceEEEEEcCCC-EEE
Confidence 99999999999999 789999999998 9999986531000 00112333332 3234569999999765 899
Q ss_pred EEeCCCcEEEEecCC
Q 005349 397 ISSSRGTSHLFAINP 411 (701)
Q Consensus 397 sgS~dgTI~Iwdl~~ 411 (701)
+++.||+|+||++..
T Consensus 266 s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 266 SVGADGVLAVYEEVD 280 (330)
T ss_dssp EEETTSCEEEEEEET
T ss_pred EEeCCCEEEEEEcCC
Confidence 999999999999864
No 54
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.86 E-value=8.8e-20 Score=195.95 Aligned_cols=188 Identities=9% Similarity=0.022 Sum_probs=128.8
Q ss_pred CCcEEEEEEC-CCCcEEEEEec-CCCEEEEEecC-----CEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCC
Q 005349 115 VPTVVHFYSL-RSQSYVHMLKF-RSPIYSVRCSS-----RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGI 186 (701)
Q Consensus 115 ~~~tVriWdl-~tg~~v~tL~f-~s~V~sV~~s~-----~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~ 186 (701)
.+++|++|++ .+|+.+.++.. +..+..++|+. .+||. +.|++|+|||+.|+++++++.++.....
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~------- 227 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA------- 227 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C-------
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee-------
Confidence 3589999999 56888888775 45666666653 77776 6799999999999999999976532100
Q ss_pred CcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccc
Q 005349 187 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 266 (701)
Q Consensus 187 ~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~ 266 (701)
.. ..+||+.+ |.++ +.+ .
T Consensus 228 --~v-------~~vafSpd---------------------------G~~l-----------vs~----s----------- 245 (356)
T 2w18_A 228 --SV-------CHKAYSEM---------------------------GLLF-----------IVL----S----------- 245 (356)
T ss_dssp --CC-------EEEEEEET---------------------------TEEE-----------EEE----C-----------
T ss_pred --ee-------EEEEECCC---------------------------CCEE-----------EEe----c-----------
Confidence 01 12344311 1110 000 0
Q ss_pred ccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEe-----ecCCCCeEEEEEcCCCCEEEEEeC
Q 005349 267 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-----RAHKSPISALCFDPSGILLVTASV 341 (701)
Q Consensus 267 ~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~-----~~H~~~Is~laFSPdG~lLaTaS~ 341 (701)
.+. + ...++++..|++|++||..+++.+..+ .+|...+.+.+|+ |.++|+++.
T Consensus 246 ---~~~---------------~--~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~ 303 (356)
T 2w18_A 246 ---HPC---------------A--KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILT 303 (356)
T ss_dssp --------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEET
T ss_pred ---cCC---------------C--cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcC
Confidence 000 0 012345678899999999999988776 3777775554544 999999999
Q ss_pred CCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 342 QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 342 dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
||+ |+|||+.++ +++++|. |+....+.+++|||||++||+||.|+||+|||+
T Consensus 304 DgT-IkIWDl~tG--------------k~l~tL~-gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 304 SGT-IAIWDLLLG--------------QCTALLP-PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TSC-EEEEETTTC--------------SEEEEEC-CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCc-EEEEECCCC--------------cEEEEec-CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 998 999999988 7778874 555444557999999999999999999999996
No 55
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.86 E-value=2.1e-19 Score=189.20 Aligned_cols=183 Identities=11% Similarity=0.091 Sum_probs=139.2
Q ss_pred cEEEEEECCC-----CcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCC
Q 005349 117 TVVHFYSLRS-----QSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIG 187 (701)
Q Consensus 117 ~tVriWdl~t-----g~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~ 187 (701)
++|++||+.+ +..+.+++. ...|.+++|+ +++|++ +.|++|++||+.+++++.++..|...
T Consensus 40 ~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~---------- 109 (319)
T 3frx_A 40 KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD---------- 109 (319)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----------
T ss_pred ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc----------
Confidence 7899999864 345666664 6799999996 466666 67899999999999988888776321
Q ss_pred cccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccc
Q 005349 188 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 267 (701)
Q Consensus 188 ~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~ 267 (701)
+ ..+++.. + +
T Consensus 110 -----v----~~~~~~~-------------~--------------~---------------------------------- 119 (319)
T 3frx_A 110 -----V----MSVDIDK-------------K--------------A---------------------------------- 119 (319)
T ss_dssp -----E----EEEEECT-------------T--------------S----------------------------------
T ss_pred -----E----EEEEEcC-------------C--------------C----------------------------------
Confidence 1 1123321 0 0
Q ss_pred cccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCC------CCEEEEEeC
Q 005349 268 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS------GILLVTASV 341 (701)
Q Consensus 268 ~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd------G~lLaTaS~ 341 (701)
..++++..||+|+|||+. ++++..+.+|...|.+++|+|+ +.+|++++.
T Consensus 120 ------------------------~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~ 174 (319)
T 3frx_A 120 ------------------------SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174 (319)
T ss_dssp ------------------------CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEET
T ss_pred ------------------------CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeC
Confidence 012345678999999997 4578899999999999999995 559999999
Q ss_pred CCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCC
Q 005349 342 QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (701)
Q Consensus 342 dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H 421 (701)
||+ |++||+... .....+ .|+. ..|.+++|+|||++||+++.||+|+|||+........+..|
T Consensus 175 d~~-i~~wd~~~~--------------~~~~~~-~~h~-~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 237 (319)
T 3frx_A 175 DKM-VKAWNLNQF--------------QIEADF-IGHN-SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237 (319)
T ss_dssp TSC-EEEEETTTT--------------EEEEEE-CCCC-SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred CCE-EEEEECCcc--------------hhheee-cCCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 998 999999876 455555 3543 46999999999999999999999999999876544455443
No 56
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.86 E-value=4.7e-19 Score=193.99 Aligned_cols=218 Identities=17% Similarity=0.202 Sum_probs=151.7
Q ss_pred CcEEEEEECCCCcEEEEEec-CCCEEEEEecCCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCccccee
Q 005349 116 PTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 193 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~pi 193 (701)
+++|++||+++++++.++.. ...|.++.++++.|++ +.+++|++||+.+++.+.++..+.. ....+
T Consensus 178 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~------------~v~~~ 245 (445)
T 2ovr_B 178 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA------------AVRCV 245 (445)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS------------CEEEE
T ss_pred CCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc------------cEEEE
Confidence 47899999999999999974 6799999999877776 6689999999999999888876632 12234
Q ss_pred eeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCCC
Q 005349 194 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 273 (701)
Q Consensus 194 Als~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~ 273 (701)
++..++|+.++.+ ..+..|..+..+.+. .+. ..
T Consensus 246 ~~~~~~l~~~~~d---------------------------g~i~iwd~~~~~~~~----~~~----------------~~ 278 (445)
T 2ovr_B 246 QYDGRRVVSGAYD---------------------------FMVKVWDPETETCLH----TLQ----------------GH 278 (445)
T ss_dssp EECSSCEEEEETT---------------------------SCEEEEEGGGTEEEE----EEC----------------CC
T ss_pred EECCCEEEEEcCC---------------------------CEEEEEECCCCcEeE----Eec----------------CC
Confidence 4444555544211 122222211111100 000 00
Q ss_pred CCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCC
Q 005349 274 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP 353 (701)
Q Consensus 274 ~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~ 353 (701)
...+...... ...++.+..||.|++||+.+++++..+.+|...+.+++++ +.+|++++.||+ |++||+.+
T Consensus 279 ~~~v~~~~~~-------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~vwd~~~ 348 (445)
T 2ovr_B 279 TNRVYSLQFD-------GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADST-VKIWDIKT 348 (445)
T ss_dssp SSCEEEEEEC-------SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSC-EEEEETTT
T ss_pred CCceEEEEEC-------CCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCe-EEEEECCC
Confidence 0000000000 1245667789999999999999999999999999998874 679999999998 99999987
Q ss_pred CCCCCCCccCCCCceeEEEEEecc-CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 354 GILGTSSACDAGTSYVHLYRLQRG-LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 354 ~~~~~~s~~~~~~~~~~l~~l~rG-~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
+ ..+..+... .+...|.+++|+ +++|++++.||+|+|||+.+......+
T Consensus 349 ~--------------~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 349 G--------------QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp C--------------CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred C--------------cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 6 566666421 123459999995 689999999999999999876544444
No 57
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.85 E-value=2.7e-19 Score=208.19 Aligned_cols=236 Identities=13% Similarity=0.222 Sum_probs=168.5
Q ss_pred EEEEeccCCeEEEEecCCC----CeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 005349 20 VLLLGYRSGFQVWDVEEAD----NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (701)
Q Consensus 20 vL~~g~~~g~qVwdv~~~~----~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~ 95 (701)
++..+.++.++|||+.... .....+..|.+.|.++.+.|+. .+|+.++.
T Consensus 398 l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g--------------~~l~sgs~------------- 450 (694)
T 3dm0_A 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG--------------QFALSGSW------------- 450 (694)
T ss_dssp EEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS--------------SEEEEEET-------------
T ss_pred EEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC--------------CEEEEEeC-------------
Confidence 4445556779999997632 2345567799999999998743 24554432
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe-cCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEE
Q 005349 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAI 171 (701)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~-f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl 171 (701)
+++|+|||+.++++++++. +...|.+|+|+ +++|++ +.|++|++||+... +..++
T Consensus 451 --------------------Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~ 509 (694)
T 3dm0_A 451 --------------------DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTI 509 (694)
T ss_dssp --------------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEE
T ss_pred --------------------CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cceee
Confidence 2789999999999999886 46799999996 455555 67899999998653 33333
Q ss_pred ecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhcee
Q 005349 172 LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGI 251 (701)
Q Consensus 172 ~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl 251 (701)
..... + +...+ ..+++..
T Consensus 510 ~~~~~--~---------h~~~v----~~~~~~~----------------------------------------------- 527 (694)
T 3dm0_A 510 SEGGE--G---------HRDWV----SCVRFSP----------------------------------------------- 527 (694)
T ss_dssp CSSTT--S---------CSSCE----EEEEECS-----------------------------------------------
T ss_pred ccCCC--C---------CCCcE----EEEEEeC-----------------------------------------------
Confidence 21100 0 00001 1122221
Q ss_pred EEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC
Q 005349 252 VNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP 331 (701)
Q Consensus 252 ~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP 331 (701)
++. ...++++..||.|+|||+.+++++..+.+|...|.+|+|+|
T Consensus 528 --------------------~~~----------------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 571 (694)
T 3dm0_A 528 --------------------NTL----------------QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP 571 (694)
T ss_dssp --------------------CSS----------------SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred --------------------CCC----------------cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC
Confidence 000 00233456789999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 332 SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 332 dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
||++|+|++.||+ |+|||+.++ .+++.+.. ...|.+++|+||+.+|+++++ +.|+|||+..
T Consensus 572 dg~~l~sg~~Dg~-i~iwd~~~~--------------~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~ 632 (694)
T 3dm0_A 572 DGSLCASGGKDGV-VLLWDLAEG--------------KKLYSLEA---NSVIHALCFSPNRYWLCAATE-HGIKIWDLES 632 (694)
T ss_dssp TSSEEEEEETTSB-CEEEETTTT--------------EEEECCBC---SSCEEEEEECSSSSEEEEEET-TEEEEEETTT
T ss_pred CCCEEEEEeCCCe-EEEEECCCC--------------ceEEEecC---CCcEEEEEEcCCCcEEEEEcC-CCEEEEECCC
Confidence 9999999999998 999999887 56666532 245999999999999988764 5699999987
Q ss_pred CCCceeecC
Q 005349 412 LGGSVNFQP 420 (701)
Q Consensus 412 ~g~~~~~~~ 420 (701)
......+..
T Consensus 633 ~~~~~~~~~ 641 (694)
T 3dm0_A 633 KSIVEDLKV 641 (694)
T ss_dssp TEEEEEECC
T ss_pred CCChhhhcc
Confidence 544444443
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.1e-20 Score=202.08 Aligned_cols=111 Identities=17% Similarity=0.351 Sum_probs=90.3
Q ss_pred ccCCCCeEEEEECCCCcEEEEee-cCCCCeEEE----EEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeE
Q 005349 296 DADNVGMVIVRDIVSKNVIAQFR-AHKSPISAL----CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~~~i~~~~-~H~~~Is~l----aFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~ 370 (701)
++..||.|+|||+.+++++..+. .|..+|.+| +|+|+|.+|++++.||+ |+|||+.++ .+
T Consensus 231 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~--------------~~ 295 (437)
T 3gre_A 231 LGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWNFVKG--------------HC 295 (437)
T ss_dssp EEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEETTTT--------------EE
T ss_pred EEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEEcCCC--------------cE
Confidence 35578999999999999999987 888899999 45567999999999987 999999876 44
Q ss_pred EEEEec-----------------------c-CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCC
Q 005349 371 LYRLQR-----------------------G-LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 422 (701)
Q Consensus 371 l~~l~r-----------------------G-~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~ 422 (701)
+..+.. | .+...|.+++|+ ++++|++++.||+|+|||+........+..|.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 370 (437)
T 3gre_A 296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS 370 (437)
T ss_dssp EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence 444431 1 123348999999 88999999999999999999877777777774
No 59
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.85 E-value=2.4e-19 Score=190.27 Aligned_cols=223 Identities=12% Similarity=0.228 Sum_probs=151.4
Q ss_pred cEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccc
Q 005349 19 RVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATA 98 (701)
Q Consensus 19 ~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~ 98 (701)
.++..+.++.++|||+.+ +.....+..|.++|.++.+.|+. .+|+.++.
T Consensus 90 ~l~s~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~v~~sp~~--------------~~l~s~~~---------------- 138 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSPDN--------------RQILSAGA---------------- 138 (343)
T ss_dssp EEEEEETTSEEEEEETTS-SCEEEEEECCCSCEEEEEECSST--------------TEEEEEET----------------
T ss_pred EEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcEEEEEECCCC--------------CEEEEEcC----------------
Confidence 344555677799999987 45666677799999999998753 24554432
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe----cCCCEEEEEecC------------CEEEE-EeCCEEEEEE
Q 005349 99 CNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK----FRSPIYSVRCSS------------RVVAI-CQAAQVHCFD 161 (701)
Q Consensus 99 ~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~----f~s~V~sV~~s~------------~~LaV-a~~~~I~iwD 161 (701)
+++|++||+.. ++...+. +...|.+++|++ .+|++ +.|++|++||
T Consensus 139 -----------------d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 200 (343)
T 2xzm_R 139 -----------------EREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200 (343)
T ss_dssp -----------------TSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE
T ss_pred -----------------CCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc
Confidence 16799999984 4443332 356899999974 35655 6799999999
Q ss_pred CCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhh
Q 005349 162 AATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAK 241 (701)
Q Consensus 162 l~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~ 241 (701)
.+.+...++..|.. ++ .-+++.. + |.
T Consensus 201 -~~~~~~~~~~~h~~---------------~v----~~~~~s~-------------~--------------g~------- 226 (343)
T 2xzm_R 201 -TNFQIRYTFKAHES---------------NV----NHLSISP-------------N--------------GK------- 226 (343)
T ss_dssp -TTTEEEEEEECCSS---------------CE----EEEEECT-------------T--------------SS-------
T ss_pred -CCCceeEEEcCccc---------------cc----eEEEECC-------------C--------------CC-------
Confidence 44555566655521 11 1123321 0 00
Q ss_pred hchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCC-CcEEEEeecC
Q 005349 242 ESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KNVIAQFRAH 320 (701)
Q Consensus 242 ~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s-~~~i~~~~~H 320 (701)
.++++..||.|+|||+.+ ..+...+ .|
T Consensus 227 ---------------------------------------------------~l~sgs~dg~v~iwd~~~~~~~~~~~-~~ 254 (343)
T 2xzm_R 227 ---------------------------------------------------YIATGGKDKKLLIWDILNLTYPQREF-DA 254 (343)
T ss_dssp ---------------------------------------------------EEEEEETTCEEEEEESSCCSSCSEEE-EC
T ss_pred ---------------------------------------------------EEEEEcCCCeEEEEECCCCcccceee-cC
Confidence 123456789999999954 4444444 35
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe----------ccCCcccEEEEEEcC
Q 005349 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ----------RGLTNAVIQDISFSD 390 (701)
Q Consensus 321 ~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~----------rG~~~a~I~~iaFSp 390 (701)
...|.+++|+|++.+|++++ |+. |+|||+.+... ..+..+. +|+ ...|.+++|+|
T Consensus 255 ~~~v~~v~~sp~~~~la~~~-d~~-v~iw~~~~~~~------------~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp 319 (343)
T 2xzm_R 255 GSTINQIAFNPKLQWVAVGT-DQG-VKIFNLMTQSK------------APVCTIEAEPITKAEGQKGK-NPQCTSLAWNA 319 (343)
T ss_dssp SSCEEEEEECSSSCEEEEEE-SSC-EEEEESSSCCS------------CSEEECCCCSGGGBTTBCCS-CCCEEEEEECS
T ss_pred CCcEEEEEECCCCCEEEEEC-CCC-EEEEEeCCCCC------------CceEEeecCcchhhhhhcCC-CCceEEEEECC
Confidence 56799999999999988665 556 89999987511 1111221 133 23599999999
Q ss_pred CCCEEEEEeCCCcEEEEecCC
Q 005349 391 DSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 391 Dg~~lAsgS~dgTI~Iwdl~~ 411 (701)
||++||+|+.||+|+||++.+
T Consensus 320 ~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 320 LGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp SSCCEEEEETTSEEEEEEEEE
T ss_pred CCCeEEEecCCceEEEEEEEc
Confidence 999999999999999999864
No 60
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.85 E-value=3.4e-19 Score=187.71 Aligned_cols=229 Identities=9% Similarity=0.094 Sum_probs=165.5
Q ss_pred CcEEEEe-ccCCeEEEEecCCCC--eeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 18 RRVLLLG-YRSGFQVWDVEEADN--VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 18 ~~vL~~g-~~~g~qVwdv~~~~~--~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
.++|+.| .++.++|||++. ++ ....+..|.++|.++.+.|+. .+|+.++.
T Consensus 20 ~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~--------------~~l~~~~~------------ 72 (372)
T 1k8k_C 20 RTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDS--------------NRIVTCGT------------ 72 (372)
T ss_dssp SSEEEEECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEETTT--------------TEEEEEET------------
T ss_pred CCEEEEEeCCCEEEEEeCCC-CcEEeeeeecCCCCcccEEEEeCCC--------------CEEEEEcC------------
Confidence 4556565 677799999987 43 455566789999999998743 25554442
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe---cCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCcee
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK---FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIE 168 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~---f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~ 168 (701)
+++|++||+++++....+. +...|.+++|+ +++|++ +.++.|++||+.+.+..
T Consensus 73 ---------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~ 131 (372)
T 1k8k_C 73 ---------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 131 (372)
T ss_dssp ---------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred ---------------------CCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Confidence 1669999999998777665 46789999996 567776 56789999999887642
Q ss_pred EEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchh
Q 005349 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (701)
Q Consensus 169 ~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la 248 (701)
..+...... . ..++ ..+++.. + +
T Consensus 132 ~~~~~~~~~--~---------~~~i----~~~~~~~-------------~--------------~--------------- 154 (372)
T 1k8k_C 132 WVCKHIKKP--I---------RSTV----LSLDWHP-------------N--------------S--------------- 154 (372)
T ss_dssp EEEEEECTT--C---------CSCE----EEEEECT-------------T--------------S---------------
T ss_pred eeeeeeecc--c---------CCCe----eEEEEcC-------------C--------------C---------------
Confidence 222111000 0 0001 1122220 0 0
Q ss_pred ceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEEC------------------CC
Q 005349 249 AGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDI------------------VS 310 (701)
Q Consensus 249 ~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl------------------~s 310 (701)
..++.+..+|.|++||+ ..
T Consensus 155 -------------------------------------------~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (372)
T 1k8k_C 155 -------------------------------------------VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF 191 (372)
T ss_dssp -------------------------------------------SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred -------------------------------------------CEEEEEcCCCCEEEEEcccccccccccccccccccch
Confidence 01233456789999995 46
Q ss_pred CcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC
Q 005349 311 KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 390 (701)
Q Consensus 311 ~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp 390 (701)
++++..+.+|..+|.+++|+|+|++|++++.||+ |++||+.++ ..+..+. ++ ...|.+++|+|
T Consensus 192 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~--------------~~~~~~~-~~-~~~v~~~~~~~ 254 (372)
T 1k8k_C 192 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKK--------------MAVATLA-SE-TLPLLAVTFIT 254 (372)
T ss_dssp TCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGT--------------TEEEEEE-CS-SCCEEEEEEEE
T ss_pred hhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCCC--------------ceeEEEc-cC-CCCeEEEEEec
Confidence 7899999999999999999999999999999997 999999876 5666664 33 34699999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCC
Q 005349 391 DSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 391 Dg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
|+++|+++ .|++|+||++...
T Consensus 255 ~~~~l~~~-~d~~i~i~~~~~~ 275 (372)
T 1k8k_C 255 ESSLVAAG-HDCFPVLFTYDSA 275 (372)
T ss_dssp TTEEEEEE-TTSSCEEEEEETT
T ss_pred CCCEEEEE-eCCeEEEEEccCc
Confidence 99999988 8999999999873
No 61
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.85 E-value=5.8e-20 Score=197.22 Aligned_cols=242 Identities=11% Similarity=0.103 Sum_probs=150.4
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
..++........+.|++... ....|++.|++++|.|++ .+||.++.+.
T Consensus 17 ~~~~~~~g~~~~~~w~~p~~-----~p~~H~~~V~~v~fSpDG--------------~~las~s~d~------------- 64 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPVT-----APACMEVQIGAVRYRRDG--------------ALLLAASSLS------------- 64 (357)
T ss_dssp ----------------------------CCCSEEEEEEECSSS--------------CEEEEEECSS-------------
T ss_pred ceEEecCCCccccccCCCCC-----CcccccCCEEEEEECCCC--------------CEEEEEcCCC-------------
Confidence 44455555666799998752 123589999999999864 2566554321
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcE-----EEEEecCCCEEEEEec--CCEEEEEeCCEEEEEECCCCceeEE
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSY-----VHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYA 170 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~-----v~tL~f~s~V~sV~~s--~~~LaVa~~~~I~iwDl~t~~~~~t 170 (701)
...++++|++|+..++.. .....+...|.+|+|+ +++|+.+.+++|++||+.+++....
T Consensus 65 --------------~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~ 130 (357)
T 4g56_B 65 --------------SRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLV 130 (357)
T ss_dssp --------------SSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CC
T ss_pred --------------CccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEE
Confidence 123668999999988753 3445677889999997 4677778899999999988764321
Q ss_pred E----ecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhc
Q 005349 171 I----LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (701)
Q Consensus 171 l----~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~ 246 (701)
. ..|. +++ ..|+|..
T Consensus 131 ~~~~~~~h~---------------~~V----~~v~~sp------------------------------------------ 149 (357)
T 4g56_B 131 NKFAKYEHD---------------DIV----KTLSVFS------------------------------------------ 149 (357)
T ss_dssp CCEEECCCS---------------SCE----EEEEECS------------------------------------------
T ss_pred EeeccCCCC---------------CCE----EEEEECC------------------------------------------
Confidence 1 1111 011 1122220
Q ss_pred hhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEE
Q 005349 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISA 326 (701)
Q Consensus 247 la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~ 326 (701)
++ ..++++..||.|+|||+.+++++..|++|...|.+
T Consensus 150 -------------------------dg------------------~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~ 186 (357)
T 4g56_B 150 -------------------------DG------------------TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNC 186 (357)
T ss_dssp -------------------------SS------------------SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred -------------------------CC------------------CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEE
Confidence 00 12334567899999999999999999999999999
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCC-CCEEEEEeCCCcE
Q 005349 327 LCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD-SNWIMISSSRGTS 404 (701)
Q Consensus 327 laFSPdG~-lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpD-g~~lAsgS~dgTI 404 (701)
|+|+|++. +|++++.||+ |+|||+.++ ..+..+........|.+++|+|+ +++||+|+.|++|
T Consensus 187 v~~s~~~~~~~~s~~~dg~-v~~wd~~~~--------------~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i 251 (357)
T 4g56_B 187 VAACPGKDTIFLSCGEDGR-ILLWDTRKP--------------KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNV 251 (357)
T ss_dssp EEECTTCSSCEEEEETTSC-EEECCTTSS--------------SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred EEEccCCCceeeeeccCCc-eEEEECCCC--------------ceeeeeeeccccccccchhhhhcccceEEEeecccce
Confidence 99999985 8999999998 899999876 12122211223345999999997 5789999999999
Q ss_pred EEEecCCCCCceeecCCCCC
Q 005349 405 HLFAINPLGGSVNFQPTDAN 424 (701)
Q Consensus 405 ~Iwdl~~~g~~~~~~~H~~~ 424 (701)
+|||+........+..|...
T Consensus 252 ~~wd~~~~~~~~~~~~~~~~ 271 (357)
T 4g56_B 252 SLVNIKNPDSAQTSAVHSQN 271 (357)
T ss_dssp EEEESSCGGGCEEECCCSSC
T ss_pred eEEECCCCcEeEEEecccee
Confidence 99999887666777777543
No 62
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.85 E-value=3.3e-19 Score=190.47 Aligned_cols=266 Identities=12% Similarity=0.071 Sum_probs=168.2
Q ss_pred cEEEEeccCCeEEEEecCCCCeeEEee--eccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 19 RVLLLGYRSGFQVWDVEEADNVHDLVS--RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 19 ~vL~~g~~~g~qVwdv~~~~~~~elvs--~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
.++..+.++.++|||+.. +.....+. .|.+.|.++.+.|.. ..+|+.++.
T Consensus 88 ~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~-------------~~~l~s~~~-------------- 139 (383)
T 3ei3_B 88 TVAVGSKGGDIILWDYDV-QNKTSFIQGMGPGDAITGMKFNQFN-------------TNQLFVSSI-------------- 139 (383)
T ss_dssp EEEEEEBTSCEEEEETTS-TTCEEEECCCSTTCBEEEEEEETTE-------------EEEEEEEET--------------
T ss_pred EEEEEcCCCeEEEEeCCC-cccceeeecCCcCCceeEEEeCCCC-------------CCEEEEEeC--------------
Confidence 444445556799999987 44555554 589999999998721 124554432
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec----CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeE
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF----RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEY 169 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f----~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~ 169 (701)
+++|++||+++ +.+..+.. ...|.+++|+ +++|++ +.++.|++||+ +.+.+.
T Consensus 140 -------------------d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~ 198 (383)
T 3ei3_B 140 -------------------RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIF 198 (383)
T ss_dssp -------------------TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEE
T ss_pred -------------------CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEE
Confidence 27899999996 55666543 3679999997 466766 56899999999 577777
Q ss_pred EEecCCCccCCCCCCCCCcccceeeecc--c-eEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhc
Q 005349 170 AILTNPIVMGHPSAGGIGIGYGPLAVGP--R-WLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (701)
Q Consensus 170 tl~t~~~~~~~~~~~~~~~~~~piAls~--r-~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~ 246 (701)
++..+.. .+..++++| + .|+.++. +..|..|..+..+.
T Consensus 199 ~~~~h~~------------~v~~~~~~~~~~~~l~s~~~---------------------------d~~i~iwd~~~~~~ 239 (383)
T 3ei3_B 199 KEKLHKA------------KVTHAEFNPRCDWLMATSSV---------------------------DATVKLWDLRNIKD 239 (383)
T ss_dssp EEECSSS------------CEEEEEECSSCTTEEEEEET---------------------------TSEEEEEEGGGCCS
T ss_pred EeccCCC------------cEEEEEECCCCCCEEEEEeC---------------------------CCEEEEEeCCCCCc
Confidence 8776632 123355554 2 4444322 12222222221110
Q ss_pred hhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCC-----
Q 005349 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK----- 321 (701)
Q Consensus 247 la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~----- 321 (701)
...-+..++... .+ ++..+.|. . ...++.+..||.|+|||+.+++.+..+..|.
T Consensus 240 ~~~~~~~~~~~~--~v--~~~~~s~~----------~-------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 240 KNSYIAEMPHEK--PV--NAAYFNPT----------D-------STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298 (383)
T ss_dssp TTCEEEEEECSS--CE--EEEEECTT----------T-------SCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred ccceEEEecCCC--ce--EEEEEcCC----------C-------CCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence 000011111110 00 00001110 0 1245567789999999999988777777653
Q ss_pred ------------CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEc
Q 005349 322 ------------SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFS 389 (701)
Q Consensus 322 ------------~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFS 389 (701)
..+.+++|+|||++ +++.||+ |+|||+.++ ..+..+....+...+.+++|+
T Consensus 299 ~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-i~iwd~~~~--------------~~~~~l~~~~~~~~~~~~~~s 361 (383)
T 3ei3_B 299 HLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-IDIYDANSG--------------GLVHQLRDPNAAGIISLNKFS 361 (383)
T ss_dssp TSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-EEEEETTTC--------------CEEEEECBTTBCSCCCEEEEC
T ss_pred cccceEEeccCCCCceEEEecCCccc--ccCCCCe-EEEEecCCC--------------ceeeeecCCCCCceEEEEEEe
Confidence 34556788888877 8889998 999999887 567777532234457788999
Q ss_pred CCCCEEEEEeCCCcEEEEecCC
Q 005349 390 DDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 390 pDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
||+++||+++ ||+|+||++++
T Consensus 362 ~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 362 PTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TTSSEEEEEE-TTEEEEEECC-
T ss_pred cCccEEEEec-CCcEEEEecCC
Confidence 9999999997 99999999974
No 63
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.85 E-value=4.8e-19 Score=199.49 Aligned_cols=313 Identities=8% Similarity=0.097 Sum_probs=187.5
Q ss_pred cEEEEeccCCeEEEEecCCCCeeEEe-e---eccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 19 RVLLLGYRSGFQVWDVEEADNVHDLV-S---RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 19 ~vL~~g~~~g~qVwdv~~~~~~~elv-s---~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
.++..+.++.+++||+.. ++....+ . .|.++|..+.+. ++ .+|+.++.
T Consensus 221 ~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~--------------~~l~~~~~------------ 272 (615)
T 1pgu_A 221 FVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWL-DS--------------QKFATVGA------------ 272 (615)
T ss_dssp EEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEES-SS--------------SEEEEEET------------
T ss_pred EEEEEeCCCeEEEEECCC-CCEeEEecccccccCCceEEEEEc-CC--------------CEEEEEcC------------
Confidence 444455567799999987 4454455 5 788999999885 32 24554442
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecC-----CCEEEEEe-cCCEEEE-EeCCEEEEEECCCCce
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFR-----SPIYSVRC-SSRVVAI-CQAAQVHCFDAATLEI 167 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~-----s~V~sV~~-s~~~LaV-a~~~~I~iwDl~t~~~ 167 (701)
+++|++||+++++++.++... ..+.++.+ +++.+++ +.++.|++||+.+++.
T Consensus 273 ---------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 273 ---------------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV 331 (615)
T ss_dssp ---------------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE
T ss_pred ---------------------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE
Confidence 177999999999999999875 57888888 4566665 6789999999999888
Q ss_pred eEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCC--ceecCCCccCCcccccccccccccCCCcceeehhhhchh
Q 005349 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSP--VVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (701)
Q Consensus 168 ~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~--~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk 245 (701)
+..+..+... +..+++ |. |+.++.+ +..|....+... ....|...+....+
T Consensus 332 ~~~~~~~~~~------------v~~~~~-~~-l~~~~~dg~i~~w~~~~~~~~-------------~~~~v~~~~~~~~~ 384 (615)
T 1pgu_A 332 LKTISGHNKG------------ITALTV-NP-LISGSYDGRIMEWSSSSMHQD-------------HSNLIVSLDNSKAQ 384 (615)
T ss_dssp EEEECCCSSC------------EEEEET-TT-TEEEETTSCEEETTTTEEECC-------------CCSCEEEEECCSTT
T ss_pred EEEEeCCCCC------------EEEEEe-cC-cEEECCCCeEEEEEchhhcCc-------------ccCceEEEEECCCc
Confidence 8888765321 223444 33 3332221 222221100000 00011111110011
Q ss_pred chhce----eEEcCCccceec--ccccccccCCCC-----------------Cccc-cccCCCCCCC--cccccccccCC
Q 005349 246 HLAAG----IVNLGDLGYKKL--SQYCSEFLPDSQ-----------------NSLQ-SAIPGGKSNG--TVNGHFPDADN 299 (701)
Q Consensus 246 ~la~g----l~~lGd~g~~~l--s~y~~~~~p~~~-----------------~s~~-~a~~~~~~~g--~~~~~~~~~~~ 299 (701)
.++++ ...+.+...... ......+.|++. +... .......... .....++.+..
T Consensus 385 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (615)
T 1pgu_A 385 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLE 464 (615)
T ss_dssp CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEET
T ss_pred EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeec
Confidence 11110 000111000000 000000001000 0000 0000000000 00123455666
Q ss_pred -CCeEEEEECCCCcEE-EEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 300 -VGMVIVRDIVSKNVI-AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 300 -dG~V~IwDl~s~~~i-~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
+|.|++||+.+++.. ..+.+|..+|.+++|+|||++|++++.||+ |+|||+.++ ..+..+ .+
T Consensus 465 ~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~~~--------------~~~~~~-~~ 528 (615)
T 1pgu_A 465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSR--------------EVKTSR-WA 528 (615)
T ss_dssp TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTT--------------EEEECC-SC
T ss_pred CCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeCCCC--------------cceeEe-ec
Confidence 999999999988766 677899999999999999999999999998 999999887 555555 34
Q ss_pred CCcccEEEEEEcC----------CCCEEEEEeCCCcEEEEecCCCC-CceeecCCCC
Q 005349 378 LTNAVIQDISFSD----------DSNWIMISSSRGTSHLFAINPLG-GSVNFQPTDA 423 (701)
Q Consensus 378 ~~~a~I~~iaFSp----------Dg~~lAsgS~dgTI~Iwdl~~~g-~~~~~~~H~~ 423 (701)
.+...|.+++|+| |+++||+++.||+|+||++...+ ....+..|..
T Consensus 529 ~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~ 585 (615)
T 1pgu_A 529 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 585 (615)
T ss_dssp CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT
T ss_pred CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCcc
Confidence 2345699999999 99999999999999999998863 3445666643
No 64
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.84 E-value=5.3e-19 Score=188.66 Aligned_cols=273 Identities=12% Similarity=0.109 Sum_probs=169.8
Q ss_pred EEEE-eccCCeEEEEe----cCCCC------eeEEeee----------ccCCEEEEEEeeCCCCCccccCccccCCCEEE
Q 005349 20 VLLL-GYRSGFQVWDV----EEADN------VHDLVSR----------YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLV 78 (701)
Q Consensus 20 vL~~-g~~~g~qVwdv----~~~~~------~~elvs~----------~dG~V~~l~~lp~p~~~~~~~d~f~~~rplla 78 (701)
+|+. +.++.++|||+ +. +. ....+.. |.+.|.++++.|+. .+|+
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--------------~~l~ 124 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQE-GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG--------------NSIV 124 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS--------------SEEE
T ss_pred EEEEecCCceEEEEEEecccCC-ccccccccccccccccccccccccCCCCceEEEEEcCCC--------------CEEE
Confidence 5555 45566999999 65 33 2233333 57799999998742 2555
Q ss_pred EEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeC
Q 005349 79 FCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQA 154 (701)
Q Consensus 79 vv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~ 154 (701)
+++. +++|++|| .+++.+..+.. ...|.+++|+ +++|++ +.+
T Consensus 125 ~~~~---------------------------------dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (425)
T 1r5m_A 125 TGVE---------------------------------NGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVE 170 (425)
T ss_dssp EEET---------------------------------TSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETT
T ss_pred EEeC---------------------------------CCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecC
Confidence 5442 15699999 78888888874 6799999996 456665 668
Q ss_pred CEEEEEECCCCceeEEEecCCCccCCC---CCCCCCcccceeeecc-ceEEEcCCCceecCCCccCCccccccccccccc
Q 005349 155 AQVHCFDAATLEIEYAILTNPIVMGHP---SAGGIGIGYGPLAVGP-RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFA 230 (701)
Q Consensus 155 ~~I~iwDl~t~~~~~tl~t~~~~~~~~---~~~~~~~~~~piAls~-r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~ 230 (701)
+.|++||+.+++.+..+..+....... ...+-......+++.+ ..++.++.
T Consensus 171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 225 (425)
T 1r5m_A 171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP------------------------- 225 (425)
T ss_dssp CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECG-------------------------
T ss_pred CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcC-------------------------
Confidence 999999999998888776543210000 0000000011122221 11111110
Q ss_pred CCCcceeehhhhchhchhceeEEcCCccceecccccccccCCCCCcccc-c-cCCCCCCCcccccccccCCCCeEEEEEC
Q 005349 231 SNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQS-A-IPGGKSNGTVNGHFPDADNVGMVIVRDI 308 (701)
Q Consensus 231 s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~-a-~~~~~~~g~~~~~~~~~~~dG~V~IwDl 308 (701)
...+..|..+..+.+. .+ ......+.. + ++. ...++.+..+|.|+|||+
T Consensus 226 --~g~i~~~d~~~~~~~~------------~~--------~~~~~~i~~~~~~~~-------~~~l~~~~~d~~i~i~d~ 276 (425)
T 1r5m_A 226 --KGAIFVYQITEKTPTG------------KL--------IGHHGPISVLEFNDT-------NKLLLSASDDGTLRIWHG 276 (425)
T ss_dssp --GGCEEEEETTCSSCSE------------EE--------CCCSSCEEEEEEETT-------TTEEEEEETTSCEEEECS
T ss_pred --CCeEEEEEcCCCceee------------ee--------ccCCCceEEEEECCC-------CCEEEEEcCCCEEEEEEC
Confidence 0111111111100000 00 000000000 0 111 114556778999999999
Q ss_pred CCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEE
Q 005349 309 VSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISF 388 (701)
Q Consensus 309 ~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaF 388 (701)
.+++.+..+..|..+|.+++|+|+| +|++++.||+ |+|||+.++ ..+..+. ++ ...|.+++|
T Consensus 277 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~--------------~~~~~~~-~~-~~~i~~~~~ 338 (425)
T 1r5m_A 277 GNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQN--------------TLLALSI-VD-GVPIFAGRI 338 (425)
T ss_dssp SSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTTT--------------EEEEEEE-CT-TCCEEEEEE
T ss_pred CCCccceEecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCCC--------------cEeEecc-cC-CccEEEEEE
Confidence 9999999999999999999999999 9999999997 999999876 5555554 32 345999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCC
Q 005349 389 SDDSNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 389 SpDg~~lAsgS~dgTI~Iwdl~~~g 413 (701)
+||+++|++++.||+|+||++....
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHHH
T ss_pred cCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999999999999997643
No 65
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.84 E-value=2.3e-19 Score=187.56 Aligned_cols=249 Identities=16% Similarity=0.201 Sum_probs=166.0
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
..++..+.++.+++||+.........+..|.+.|.++.+.+.- .|.....+|+.++.
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~s~~~~~l~~~~~--------------- 137 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGL--------GIGEGAPEIVTGSR--------------- 137 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGG--------GCC-CCCEEEEEET---------------
T ss_pred ceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecccc--------ccCCCccEEEEEeC---------------
Confidence 4455555667799999997543566677799999999887521 12222345654442
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCc-EEEEEec-----CCCEEEEEe----c--CCEEEE-EeCCEEEEEECCC
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQS-YVHMLKF-----RSPIYSVRC----S--SRVVAI-CQAAQVHCFDAAT 164 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~-~v~tL~f-----~s~V~sV~~----s--~~~LaV-a~~~~I~iwDl~t 164 (701)
+++|++||+++++ .+.++.. ...|.++.+ + +++|++ +.++.|++||+.+
T Consensus 138 ------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 199 (357)
T 3i2n_A 138 ------------------DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN 199 (357)
T ss_dssp ------------------TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT
T ss_pred ------------------CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc
Confidence 1679999999997 7777764 237899984 3 567776 4578999999999
Q ss_pred CceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhch
Q 005349 165 LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 244 (701)
Q Consensus 165 ~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~s 244 (701)
.+..... .+.. ++ ..+++.. .. ..+
T Consensus 200 ~~~~~~~-~~~~---------------~v----~~~~~~~-------------~~-----------~~~----------- 224 (357)
T 3i2n_A 200 MALRWET-NIKN---------------GV----CSLEFDR-------------KD-----------ISM----------- 224 (357)
T ss_dssp TEEEEEE-ECSS---------------CE----EEEEESC-------------SS-----------SSC-----------
T ss_pred Cceeeec-CCCC---------------ce----EEEEcCC-------------CC-----------CCC-----------
Confidence 8764432 2211 01 1123321 00 000
Q ss_pred hchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEe-----ec
Q 005349 245 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-----RA 319 (701)
Q Consensus 245 k~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~-----~~ 319 (701)
..++.+..+|.|++||+.+++.+..+ .+
T Consensus 225 -----------------------------------------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 257 (357)
T 3i2n_A 225 -----------------------------------------------NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA 257 (357)
T ss_dssp -----------------------------------------------CEEEEEESTTEEEEEEEEEEETTTEEEEEEEEC
T ss_pred -----------------------------------------------CEEEEECCCCeEEEEeCcCCCcccceeeeccCC
Confidence 01223456899999999887654444 49
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEEcCCCCCCCC-----CccCCCCceeEEEEEeccCCcccEEEEEEcCCCC
Q 005349 320 HKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTS-----SACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN 393 (701)
Q Consensus 320 H~~~Is~laFSPdG~-lLaTaS~dGt~I~Iwdl~~~~~~~~-----s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~ 393 (701)
|..+|.+++|+|+|. +|++++.||. |+|||+..+..... ......+....+..+. ++ ...|.+++|+||++
T Consensus 258 ~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~-~~~v~~~~~s~~~~ 334 (357)
T 3i2n_A 258 HKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT-LS-TQPISSLDWSPDKR 334 (357)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSE-EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE-CC-SSCEEEEEECSSST
T ss_pred CcCCEEEEEECCCCCcEEEEEeCCCc-EEEeecCCCcccccccCCCCccccccccceeeccc-cC-CCCeeEEEEcCCCC
Confidence 999999999999999 8999999997 99999986521000 0000011224555553 44 34699999999999
Q ss_pred EEE-EEeCCCcEEEEecCCC
Q 005349 394 WIM-ISSSRGTSHLFAINPL 412 (701)
Q Consensus 394 ~lA-sgS~dgTI~Iwdl~~~ 412 (701)
+|+ +++.||+|+||++.+.
T Consensus 335 ~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 335 GLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp TEEEEEETTSEEEEEEECC-
T ss_pred eEEEEecCCCcEEEEECCCc
Confidence 999 8999999999999764
No 66
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.84 E-value=5.1e-19 Score=184.13 Aligned_cols=181 Identities=14% Similarity=0.233 Sum_probs=130.4
Q ss_pred cEEEEEECCC--CcEEEEEe-cCCCEEEEEec----CCEEEE-EeCCEEEEEECCCCc--eeEEEecCCCccCCCCCCCC
Q 005349 117 TVVHFYSLRS--QSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGI 186 (701)
Q Consensus 117 ~tVriWdl~t--g~~v~tL~-f~s~V~sV~~s----~~~LaV-a~~~~I~iwDl~t~~--~~~tl~t~~~~~~~~~~~~~ 186 (701)
++|+|||+.+ ++++.+|. +..+|.+|+|+ +++|++ +.|++|++||+.+++ .+.++..|..
T Consensus 31 ~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~---------- 100 (297)
T 2pm7_B 31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSA---------- 100 (297)
T ss_dssp SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSS----------
T ss_pred CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCC----------
Confidence 6799999975 46788886 46799999995 467776 668999999998764 3344433311
Q ss_pred CcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccc
Q 005349 187 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 266 (701)
Q Consensus 187 ~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~ 266 (701)
++ +.+++.. +. .|
T Consensus 101 -----~v----~~v~~~p-------------~~------------~g--------------------------------- 113 (297)
T 2pm7_B 101 -----SV----NSVQWAP-------------HE------------YG--------------------------------- 113 (297)
T ss_dssp -----CE----EEEEECC-------------GG------------GC---------------------------------
T ss_pred -----ce----eEEEeCc-------------CC------------CC---------------------------------
Confidence 01 1223321 00 00
Q ss_pred ccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc--EEEEeecCCCCeEEEEEcCC------------
Q 005349 267 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN--VIAQFRAHKSPISALCFDPS------------ 332 (701)
Q Consensus 267 ~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~--~i~~~~~H~~~Is~laFSPd------------ 332 (701)
..++++..||.|+|||+.++. ....+.+|...|.+++|+|+
T Consensus 114 -------------------------~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~ 168 (297)
T 2pm7_B 114 -------------------------PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168 (297)
T ss_dssp -------------------------SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----------
T ss_pred -------------------------cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCC
Confidence 012345678999999998763 24678899999999999997
Q ss_pred -CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCC---CEEEEEeCCCcEEEEe
Q 005349 333 -GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS---NWIMISSSRGTSHLFA 408 (701)
Q Consensus 333 -G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg---~~lAsgS~dgTI~Iwd 408 (701)
+++||||+.||+ |+|||+..+. .....+..+ +||. ..|.+|+|+||+ ++||++|.|++|+||+
T Consensus 169 ~~~~l~sgs~D~~-v~lwd~~~~~----------~~~~~~~~l-~~H~-~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 169 ESRKFVTGGADNL-VKIWKYNSDA----------QTYVLESTL-EGHS-DWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp -CCEEEEEETTSC-EEEEEEETTT----------TEEEEEEEE-CCCS-SCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred CcceEEEEcCCCc-EEEEEEcCCC----------ceEEEEEEe-cCCC-CceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 579999999998 9999997651 011234455 4654 459999999995 8999999999999999
Q ss_pred cCCC
Q 005349 409 INPL 412 (701)
Q Consensus 409 l~~~ 412 (701)
+...
T Consensus 236 ~~~~ 239 (297)
T 2pm7_B 236 QDNE 239 (297)
T ss_dssp ESST
T ss_pred eCCC
Confidence 9764
No 67
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.84 E-value=5.9e-20 Score=196.95 Aligned_cols=239 Identities=10% Similarity=0.111 Sum_probs=168.7
Q ss_pred CcEEEE-eccCCeEEEEecCC---CCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccC
Q 005349 18 RRVLLL-GYRSGFQVWDVEEA---DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (701)
Q Consensus 18 ~~vL~~-g~~~g~qVwdv~~~---~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d 93 (701)
.++|+. +.++.++|||+... ......+..|.++|.++++.|+. ..+|+.++.
T Consensus 79 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~~~l~s~~~----------- 134 (416)
T 2pm9_A 79 NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-------------DNVLASGGN----------- 134 (416)
T ss_dssp SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-------------TTBEEEECS-----------
T ss_pred CCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC-------------CCEEEEEcC-----------
Confidence 344444 55667999999862 23555566789999999998741 124544432
Q ss_pred CcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCc------EEEEE----ecCCCEEEEEecC---CEEEE-EeCCEEEE
Q 005349 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS------YVHML----KFRSPIYSVRCSS---RVVAI-CQAAQVHC 159 (701)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~------~v~tL----~f~s~V~sV~~s~---~~LaV-a~~~~I~i 159 (701)
+++|++||+++++ ....+ .+...|.+++|++ ++|++ +.++.|++
T Consensus 135 ----------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i 192 (416)
T 2pm9_A 135 ----------------------NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI 192 (416)
T ss_dssp ----------------------SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEE
T ss_pred ----------------------CCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEE
Confidence 1679999999987 44433 3467899999974 56666 46889999
Q ss_pred EECCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeeh
Q 005349 160 FDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHY 239 (701)
Q Consensus 160 wDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~ 239 (701)
||+.+.+.+.++..+....+. -.++ ..+++.. + +.
T Consensus 193 wd~~~~~~~~~~~~~~~~~~~---------~~~v----~~~~~~~-------------~--------------~~----- 227 (416)
T 2pm9_A 193 WDLKAKKEVIHLSYTSPNSGI---------KQQL----SVVEWHP-------------K--------------NS----- 227 (416)
T ss_dssp EETTTTEEEEEECCCCCSSCC---------CCCE----EEEEECS-------------S--------------CT-----
T ss_pred EECCCCCcceEEecccccccc---------CCce----EEEEECC-------------C--------------CC-----
Confidence 999999887777543210000 0001 1223321 0 00
Q ss_pred hhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCC---eEEEEECCCC-cEEE
Q 005349 240 AKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVG---MVIVRDIVSK-NVIA 315 (701)
Q Consensus 240 a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG---~V~IwDl~s~-~~i~ 315 (701)
..++.+..+| .|++||+.++ .++.
T Consensus 228 ----------------------------------------------------~~l~~~~~d~~~~~i~~~d~~~~~~~~~ 255 (416)
T 2pm9_A 228 ----------------------------------------------------TRVATATGSDNDPSILIWDLRNANTPLQ 255 (416)
T ss_dssp ----------------------------------------------------TEEEEEECCSSSCCCCEEETTSTTSCSB
T ss_pred ----------------------------------------------------CEEEEEECCCCCceEEEEeCCCCCCCcE
Confidence 0112233444 9999999986 6778
Q ss_pred Eee-cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCC-
Q 005349 316 QFR-AHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS- 392 (701)
Q Consensus 316 ~~~-~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg- 392 (701)
.+. +|..+|.+++|+| +|.+|++++.||+ |+|||+.++ ..+..+. ++. ..|.+++|+||+
T Consensus 256 ~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~~--------------~~~~~~~-~~~-~~v~~~~~s~~~~ 318 (416)
T 2pm9_A 256 TLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPESA--------------EQLSQFP-ARG-NWCFKTKFAPEAP 318 (416)
T ss_dssp CCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSSC--------------CEEEEEE-CSS-SCCCCEEECTTCT
T ss_pred EeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCCC--------------ccceeec-CCC-CceEEEEECCCCC
Confidence 888 9999999999999 9999999999997 999999876 5666664 433 459999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCCce
Q 005349 393 NWIMISSSRGTSHLFAINPLGGSV 416 (701)
Q Consensus 393 ~~lAsgS~dgTI~Iwdl~~~g~~~ 416 (701)
++|++++.||+|+||++.......
T Consensus 319 ~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 319 DLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp TEEEECCSSSEEEEEESCCCCCSS
T ss_pred CEEEEEecCCcEEEEEccCCCCCc
Confidence 899999999999999998765443
No 68
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.3e-19 Score=206.00 Aligned_cols=239 Identities=13% Similarity=0.084 Sum_probs=158.2
Q ss_pred cEEE-EeccCCeEEEEecCCCCe----------eEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcC
Q 005349 19 RVLL-LGYRSGFQVWDVEEADNV----------HDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSC 87 (701)
Q Consensus 19 ~vL~-~g~~~g~qVwdv~~~~~~----------~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~ 87 (701)
.+|+ .+.++.++|||+...... ...+..|.++|.++.+.|. .+|+..+.
T Consensus 226 ~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---------------~~lasgs~----- 285 (524)
T 2j04_B 226 GCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---------------TTVVCGFK----- 285 (524)
T ss_dssp CEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---------------SEEEEEET-----
T ss_pred ceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---------------CeEEEEeC-----
Confidence 3555 555667999999763211 1245568889999988641 13443332
Q ss_pred CccccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCc-EEEEEe-cCCCEEEE--Eec--C-CEEEE-EeCCEEEE
Q 005349 88 GTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS-YVHMLK-FRSPIYSV--RCS--S-RVVAI-CQAAQVHC 159 (701)
Q Consensus 88 ~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~-~v~tL~-f~s~V~sV--~~s--~-~~LaV-a~~~~I~i 159 (701)
+++|++||+++++ .+.++. +...|.+| .++ + ++||+ +.|++|+|
T Consensus 286 ----------------------------DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 286 ----------------------------NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp ----------------------------TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred ----------------------------CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 2789999999875 445565 46799999 455 3 67776 67899999
Q ss_pred EECCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeeh
Q 005349 160 FDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHY 239 (701)
Q Consensus 160 wDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~ 239 (701)
||++++++..++..+.... .+ .-++|.. + +.
T Consensus 338 WD~~~~~~~~~~~~~~~~~----------~v-------~~v~fsp-------------~--------------~~----- 368 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGS----------NL-------VPVVYCP-------------Q--------------IY----- 368 (524)
T ss_dssp ECGGGHHHHCEEEEECSCC----------SC-------CCEEEET-------------T--------------TT-----
T ss_pred EECCCCCcccccccccccC----------cc-------cceEeCC-------------C--------------cC-----
Confidence 9999988776665542100 00 1123331 0 00
Q ss_pred hhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeec
Q 005349 240 AKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA 319 (701)
Q Consensus 240 a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~ 319 (701)
.++.+..|++|+|||+.++.++..+.+
T Consensus 369 -----------------------------------------------------~l~s~~~d~tv~lwd~~~~~~~~~l~g 395 (524)
T 2j04_B 369 -----------------------------------------------------SYIYSDGASSLRAVPSRAAFAVHPLVS 395 (524)
T ss_dssp -----------------------------------------------------EEEEECSSSEEEEEETTCTTCCEEEEE
T ss_pred -----------------------------------------------------eEEEeCCCCcEEEEECcccccceeeec
Confidence 122345678999999999998889999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCC----C----------CccCCCC----------------cee
Q 005349 320 HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGT----S----------SACDAGT----------------SYV 369 (701)
Q Consensus 320 H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~----~----------s~~~~~~----------------~~~ 369 (701)
|..+|.+|+|||+|++||+|+.||+ |+|||+....... . -.....+ ...
T Consensus 396 H~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~ 474 (524)
T 2j04_B 396 RETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDV 474 (524)
T ss_dssp CSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC------
T ss_pred CCCceEEEEeCCCCCeEEEEECCCE-EEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCc
Confidence 9999999999999999999999997 8999975432110 0 0001100 012
Q ss_pred EEEEEeccCCcccEEEEEEcCCC---CEEEEEeCCCcEEEEecC
Q 005349 370 HLYRLQRGLTNAVIQDISFSDDS---NWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 370 ~l~~l~rG~~~a~I~~iaFSpDg---~~lAsgS~dgTI~Iwdl~ 410 (701)
++.++ +|+. ..|.+|+||||+ .+||+|+.||+|+||++.
T Consensus 475 ~~~~l-~gh~-~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 475 SKAKI-DAHG-INITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp --------CC-CSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred ceeee-cCCC-ceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 33344 3443 459999999995 499999999999999985
No 69
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.84 E-value=5.6e-19 Score=205.51 Aligned_cols=224 Identities=16% Similarity=0.226 Sum_probs=157.6
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.++..+.++.++|||+.. +.....+..|.+.|.++.+.|+. .+|+.++.
T Consensus 443 ~~l~sgs~Dg~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~--------------~~l~s~s~--------------- 492 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDN--------------RQIVSASR--------------- 492 (694)
T ss_dssp SEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTS--------------SCEEEEET---------------
T ss_pred CEEEEEeCCCcEEEEECCC-CcceeEEeCCCCCEEEEEEeCCC--------------CEEEEEeC---------------
Confidence 3444555567799999987 45566667799999999998743 23443332
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe-----cCCCEEEEEecC----CEEEE-EeCCEEEEEECCCCce
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-----FRSPIYSVRCSS----RVVAI-CQAAQVHCFDAATLEI 167 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~-----f~s~V~sV~~s~----~~LaV-a~~~~I~iwDl~t~~~ 167 (701)
+++|+|||+.... ..++. +...|.+++|++ .+|++ +.|++|++||+.+.++
T Consensus 493 ------------------D~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~ 553 (694)
T 3dm0_A 493 ------------------DRTIKLWNTLGEC-KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553 (694)
T ss_dssp ------------------TSCEEEECTTSCE-EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred ------------------CCEEEEEECCCCc-ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE
Confidence 2679999986554 33442 355799999974 34554 6789999999999988
Q ss_pred eEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhch
Q 005349 168 EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHL 247 (701)
Q Consensus 168 ~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~l 247 (701)
..++..|.. ++ ..++++. + |.
T Consensus 554 ~~~~~~h~~---------------~v----~~v~~sp-------------d--------------g~------------- 574 (694)
T 3dm0_A 554 RSTLAGHTG---------------YV----STVAVSP-------------D--------------GS------------- 574 (694)
T ss_dssp EEEECCCSS---------------CE----EEEEECT-------------T--------------SS-------------
T ss_pred EEEEcCCCC---------------CE----EEEEEeC-------------C--------------CC-------------
Confidence 888766532 11 1123321 0 00
Q ss_pred hceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEE
Q 005349 248 AAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISAL 327 (701)
Q Consensus 248 a~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~l 327 (701)
.++++..||.|+|||+.+++.+..+..| ..|.++
T Consensus 575 ---------------------------------------------~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~ 608 (694)
T 3dm0_A 575 ---------------------------------------------LCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHAL 608 (694)
T ss_dssp ---------------------------------------------EEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEE
T ss_pred ---------------------------------------------EEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEE
Confidence 1234567899999999999988887755 589999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC-----------------CcccEEEEEEcC
Q 005349 328 CFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL-----------------TNAVIQDISFSD 390 (701)
Q Consensus 328 aFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~-----------------~~a~I~~iaFSp 390 (701)
+|+|++.+|++++.+ . |+|||+.++ ..+..+.... ....+.+++|||
T Consensus 609 ~~sp~~~~l~~~~~~-~-i~iwd~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp 672 (694)
T 3dm0_A 609 CFSPNRYWLCAATEH-G-IKIWDLESK--------------SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA 672 (694)
T ss_dssp EECSSSSEEEEEETT-E-EEEEETTTT--------------EEEEEECCCCC----------------CCCCEEEEEECT
T ss_pred EEcCCCcEEEEEcCC-C-EEEEECCCC--------------CChhhhccccccccccccccccccCCceeEEeeeEEEcC
Confidence 999999999988765 4 899999876 3333331100 011278999999
Q ss_pred CCCEEEEEeCCCcEEEEecCC
Q 005349 391 DSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 391 Dg~~lAsgS~dgTI~Iwdl~~ 411 (701)
||++|++|+.||+|+||++..
T Consensus 673 dg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 673 DGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp TSSEEEEEETTSEEEEEEC--
T ss_pred CCCEEEEEcCCCeEEEEeccC
Confidence 999999999999999999965
No 70
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.84 E-value=3e-19 Score=195.55 Aligned_cols=228 Identities=14% Similarity=0.240 Sum_probs=162.7
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.++..+.++.++|||+++ ++....+..|.+.|.++.+.+ .+++.++.
T Consensus 184 ~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~----------------~~l~s~s~--------------- 231 (435)
T 1p22_A 184 RVIITGSSDSTVRVWDVNT-GEMLNTLIHHCEAVLHLRFNN----------------GMMVTCSK--------------- 231 (435)
T ss_dssp SEEEEEETTSCEEEEESSS-CCEEEEECCCCSCEEEEECCT----------------TEEEEEET---------------
T ss_pred CEEEEEcCCCeEEEEECCC-CcEEEEEcCCCCcEEEEEEcC----------------CEEEEeeC---------------
Confidence 3444445566699999987 556666667889999887642 24544432
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEE---EEEe-cCCCEEEEEecCCEEEE-EeCCEEEEEECCCCceeEEEe
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYV---HMLK-FRSPIYSVRCSSRVVAI-CQAAQVHCFDAATLEIEYAIL 172 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v---~tL~-f~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t~~~~~tl~ 172 (701)
+++|++||+++++.+ ..+. +...|.++.+++++|++ +.++.|++||+.+++.+.++.
T Consensus 232 ------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 293 (435)
T 1p22_A 232 ------------------DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN 293 (435)
T ss_dssp ------------------TSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ------------------CCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEc
Confidence 167999999998865 3333 46799999999888877 568999999999999888887
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeE
Q 005349 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (701)
Q Consensus 173 t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~ 252 (701)
.+.. ++. .+++.+
T Consensus 294 ~~~~---------------~v~----~~~~~~------------------------------------------------ 306 (435)
T 1p22_A 294 GHKR---------------GIA----CLQYRD------------------------------------------------ 306 (435)
T ss_dssp CCSS---------------CEE----EEEEET------------------------------------------------
T ss_pred CCCC---------------cEE----EEEeCC------------------------------------------------
Confidence 6532 110 112210
Q ss_pred EcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCC
Q 005349 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (701)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd 332 (701)
..++++..||.|+|||+.+++++..+.+|..+|.+++| +
T Consensus 307 ---------------------------------------~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~ 345 (435)
T 1p22_A 307 ---------------------------------------RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--D 345 (435)
T ss_dssp ---------------------------------------TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--C
T ss_pred ---------------------------------------CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--c
Confidence 01223456899999999999999999999999999999 7
Q ss_pred CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 333 GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 333 G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
|.+|++|+.||+ |+|||+..+..... .....++..+ .++. ..|.+++| |+++|++++.||+|+|||+...
T Consensus 346 ~~~l~sg~~dg~-i~vwd~~~~~~~~~-----~~~~~~~~~~-~~h~-~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 346 NKRIVSGAYDGK-IKVWDLVAALDPRA-----PAGTLCLRTL-VEHS-GRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp SSEEEEEETTSC-EEEEEHHHHTSTTS-----CTTTTEEEEE-CCCS-SCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred CCEEEEEeCCCc-EEEEECCCCCCccc-----cccchheeec-cCCC-CCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 999999999998 99999875410000 0011255555 3443 45999999 8899999999999999999765
Q ss_pred C
Q 005349 413 G 413 (701)
Q Consensus 413 g 413 (701)
.
T Consensus 416 ~ 416 (435)
T 1p22_A 416 P 416 (435)
T ss_dssp -
T ss_pred C
Confidence 3
No 71
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.84 E-value=1.7e-18 Score=189.77 Aligned_cols=225 Identities=12% Similarity=0.191 Sum_probs=168.0
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
..++..+.++.++|||+++ ++....+..|.++|.++.+.+.+. ..+|+.++.
T Consensus 174 ~~l~s~s~dg~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~------------~~~l~s~s~--------------- 225 (464)
T 3v7d_B 174 GILVSGSTDRTVRVWDIKK-GCCTHVFEGHNSTVRCLDIVEYKN------------IKYIVTGSR--------------- 225 (464)
T ss_dssp TEEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEEESSS------------CEEEEEEET---------------
T ss_pred CEEEEEeCCCCEEEEECCC-CcEEEEECCCCCccEEEEEecCCC------------CCEEEEEcC---------------
Confidence 3566666677799999987 566667777999999999986431 124544432
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcE-----------------------EEEEe-cCCCEEEEEecCCEEEE-E
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSY-----------------------VHMLK-FRSPIYSVRCSSRVVAI-C 152 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~-----------------------v~tL~-f~s~V~sV~~s~~~LaV-a 152 (701)
+++|++||+++++. +..+. +...|.++..++++|++ +
T Consensus 226 ------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 287 (464)
T 3v7d_B 226 ------------------DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 287 (464)
T ss_dssp ------------------TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred ------------------CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEe
Confidence 16799999998863 33343 35688888888888777 5
Q ss_pred eCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCC
Q 005349 153 QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASN 232 (701)
Q Consensus 153 ~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~ 232 (701)
.++.|++||+.+++++.++..+.. ++ .-+++.. +
T Consensus 288 ~d~~i~vwd~~~~~~~~~~~~~~~---------------~v----~~~~~~~-------------~-------------- 321 (464)
T 3v7d_B 288 YDNTLIVWDVAQMKCLYILSGHTD---------------RI----YSTIYDH-------------E-------------- 321 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSS---------------CE----EEEEEET-------------T--------------
T ss_pred CCCeEEEEECCCCcEEEEecCCCC---------------CE----EEEEEcC-------------C--------------
Confidence 689999999999998888765532 01 1123321 0
Q ss_pred CcceeehhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc
Q 005349 233 GSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN 312 (701)
Q Consensus 233 g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~ 312 (701)
+. .++++..||.|+|||+.+++
T Consensus 322 ~~----------------------------------------------------------~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 322 RK----------------------------------------------------------RCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp TT----------------------------------------------------------EEEEEETTSCEEEEETTTTE
T ss_pred CC----------------------------------------------------------EEEEEeCCCcEEEEECCCCc
Confidence 00 12234568999999999999
Q ss_pred EEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCC
Q 005349 313 VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS 392 (701)
Q Consensus 313 ~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg 392 (701)
++..+++|..+|.+++|+ +.+|++++.||+ |++||+.+. .....+.. ...+..++|++|+
T Consensus 344 ~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~~--------------~~~~~~~~---~~~~~~~~~~~~~ 403 (464)
T 3v7d_B 344 LMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDY--------------SRKFSYHH---TNLSAITTFYVSD 403 (464)
T ss_dssp EEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTTC--------------CEEEEEEC---TTCCCEEEEEECS
T ss_pred EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCCC--------------ceeeeecC---CCCccEEEEEeCC
Confidence 999999999999999998 689999999997 999999876 44445432 2347789999999
Q ss_pred CEEEEEeCCCcEEEEecCCCC
Q 005349 393 NWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 393 ~~lAsgS~dgTI~Iwdl~~~g 413 (701)
++|++++ ||+|+|||+.+..
T Consensus 404 ~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 404 NILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp SEEEEEE-TTEEEEEETTTCC
T ss_pred CEEEEec-CCeEEEEECCCCc
Confidence 9999999 8999999998753
No 72
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.83 E-value=1.9e-18 Score=202.40 Aligned_cols=239 Identities=13% Similarity=0.123 Sum_probs=179.3
Q ss_pred CCcEEEEecc-CCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 005349 17 TRRVLLLGYR-SGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (701)
Q Consensus 17 ~~~vL~~g~~-~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~ 95 (701)
.+..|+.|.. +.++|||+.+ +.....+..|.++|+++.+.|+. .+|++++.
T Consensus 24 ~~~~la~~~~~g~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~--------------~~l~~~~~------------- 75 (814)
T 3mkq_A 24 TEPWVLTTLYSGRVEIWNYET-QVEVRSIQVTETPVRAGKFIARK--------------NWIIVGSD------------- 75 (814)
T ss_dssp SSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSCEEEEEEEGGG--------------TEEEEEET-------------
T ss_pred CCCEEEEEeCCCEEEEEECCC-CceEEEEecCCCcEEEEEEeCCC--------------CEEEEEeC-------------
Confidence 3555666554 4599999987 55666777899999999998753 35665543
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe-cCCCEEEEEec--CCEEEE-EeCCEEEEEECCCC-ceeEE
Q 005349 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATL-EIEYA 170 (701)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~-f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~-~~~~t 170 (701)
+++|++||+.+++.+.++. +...|.+++|+ ++.|++ +.++.|++||+.+. .....
T Consensus 76 --------------------dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 135 (814)
T 3mkq_A 76 --------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (814)
T ss_dssp --------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred --------------------CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence 1779999999999999998 47799999997 456666 56789999999886 44455
Q ss_pred EecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhce
Q 005349 171 ILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAG 250 (701)
Q Consensus 171 l~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~g 250 (701)
+..+.. ++ ..+++... + +
T Consensus 136 ~~~~~~---------------~v----~~~~~~p~------------~--------------~----------------- 153 (814)
T 3mkq_A 136 FEGHEH---------------FV----MCVAFNPK------------D--------------P----------------- 153 (814)
T ss_dssp EECCSS---------------CE----EEEEEETT------------E--------------E-----------------
T ss_pred EcCCCC---------------cE----EEEEEEcC------------C--------------C-----------------
Confidence 544421 01 11233210 0 0
Q ss_pred eEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCC-CCeEEEEE
Q 005349 251 IVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHK-SPISALCF 329 (701)
Q Consensus 251 l~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~-~~Is~laF 329 (701)
..++.+..+|.|++||+.+++....+..|. .+|.+++|
T Consensus 154 -----------------------------------------~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~ 192 (814)
T 3mkq_A 154 -----------------------------------------STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192 (814)
T ss_dssp -----------------------------------------EEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEE
T ss_pred -----------------------------------------CEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEE
Confidence 012234567999999999988877877655 89999999
Q ss_pred cC--CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005349 330 DP--SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (701)
Q Consensus 330 SP--dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iw 407 (701)
+| +|.+|++++.||+ |++||+.++ ..+..+. ++. ..|.+++|+||+++|++++.||+|++|
T Consensus 193 ~~~~~~~~l~~~~~dg~-i~~~d~~~~--------------~~~~~~~-~~~-~~v~~~~~~~~~~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 193 YPLPDKPYMITASDDLT-IKIWDYQTK--------------SCVATLE-GHM-SNVSFAVFHPTLPIIISGSEDGTLKIW 255 (814)
T ss_dssp CCSTTCCEEEEECTTSE-EEEEETTTT--------------EEEEEEE-CCS-SCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred EECCCCCEEEEEeCCCE-EEEEECCCC--------------cEEEEEc-CCC-CCEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 99 9999999999997 999999876 5566663 433 459999999999999999999999999
Q ss_pred ecCCCCCceeecCCCC
Q 005349 408 AINPLGGSVNFQPTDA 423 (701)
Q Consensus 408 dl~~~g~~~~~~~H~~ 423 (701)
|+.+......+..|..
T Consensus 256 d~~~~~~~~~~~~~~~ 271 (814)
T 3mkq_A 256 NSSTYKVEKTLNVGLE 271 (814)
T ss_dssp ETTTCSEEEEECCSSS
T ss_pred ECCCCcEEEEeecCCC
Confidence 9988766666766643
No 73
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.83 E-value=1.8e-18 Score=184.77 Aligned_cols=220 Identities=11% Similarity=0.122 Sum_probs=161.5
Q ss_pred eeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcEE
Q 005349 40 VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVV 119 (701)
Q Consensus 40 ~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tV 119 (701)
....+..|.+.|.++++.|+. ..+|+.++. +++|
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~-------------~~~l~s~~~---------------------------------dg~i 98 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTH-------------PTTVAVGSK---------------------------------GGDI 98 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSC-------------TTEEEEEEB---------------------------------TSCE
T ss_pred eEEeccCCCCCEEEEEECCCC-------------CCEEEEEcC---------------------------------CCeE
Confidence 444556789999999998742 125555442 1669
Q ss_pred EEEECCCCcEEEEEe---cCCCEEEEEecC---CEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 120 HFYSLRSQSYVHMLK---FRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 120 riWdl~tg~~v~tL~---f~s~V~sV~~s~---~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
+|||+.+++....+. +...|.+++|++ ++|++ +.++.|++||+.+ .....+..+... ..+
T Consensus 99 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~------------~~~ 165 (383)
T 3ei3_B 99 ILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSW------------DYW 165 (383)
T ss_dssp EEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCS------------SCC
T ss_pred EEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCC------------CCC
Confidence 999999999988886 567999999975 56666 5689999999996 445555443110 001
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
+ ..+++.. + +
T Consensus 166 v----~~~~~~~-------------~--------------~--------------------------------------- 175 (383)
T 3ei3_B 166 Y----CCVDVSV-------------S--------------R--------------------------------------- 175 (383)
T ss_dssp E----EEEEEET-------------T--------------T---------------------------------------
T ss_pred e----EEEEECC-------------C--------------C---------------------------------------
Confidence 1 1223321 0 0
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEEc
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKI 351 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~-lLaTaS~dGt~I~Iwdl 351 (701)
..++.+..||.|++||+ +++++..+.+|...|.+++|+|+|+ +|++++.||+ |+|||+
T Consensus 176 -------------------~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-i~iwd~ 234 (383)
T 3ei3_B 176 -------------------QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDAT-VKLWDL 234 (383)
T ss_dssp -------------------TEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSE-EEEEEG
T ss_pred -------------------CEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCE-EEEEeC
Confidence 01233557899999999 5778899999999999999999999 9999999997 999999
Q ss_pred CCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCceeecCCC
Q 005349 352 IPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 422 (701)
Q Consensus 352 ~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~ 422 (701)
.+... ....+..+ ++ ...|.+++|+| |+++|++++.|++|+|||+........+..|.
T Consensus 235 ~~~~~----------~~~~~~~~--~~-~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 235 RNIKD----------KNSYIAEM--PH-EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp GGCCS----------TTCEEEEE--EC-SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred CCCCc----------ccceEEEe--cC-CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 87410 11344444 33 34699999999 99999999999999999999887777777664
No 74
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.83 E-value=2.7e-19 Score=193.30 Aligned_cols=232 Identities=16% Similarity=0.137 Sum_probs=165.8
Q ss_pred eccCCeEEEEecCCCCe---eEEeeeccCCEEEEEEee-CCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccccc
Q 005349 24 GYRSGFQVWDVEEADNV---HDLVSRYDGPVSFMQMLP-RPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATAC 99 (701)
Q Consensus 24 g~~~g~qVwdv~~~~~~---~elvs~~dG~V~~l~~lp-~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~ 99 (701)
+.++.++|||++..+.. ...+..|.++|.++.+.| +. .+|+.++.
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~--------------~~l~s~s~----------------- 102 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND--------------NVIASGSE----------------- 102 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT--------------TEEEEEET-----------------
T ss_pred cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC--------------CEEEEEeC-----------------
Confidence 44566999999764332 234557899999999987 32 35665543
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEEECCCC-------cEEEEEe-cCCCEEEEEecC---CEEEE-EeCCEEEEEECCCCce
Q 005349 100 NGTSANYHDLGNGSSVPTVVHFYSLRSQ-------SYVHMLK-FRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEI 167 (701)
Q Consensus 100 ~g~~~~~~~~~~~~~~~~tVriWdl~tg-------~~v~tL~-f~s~V~sV~~s~---~~LaV-a~~~~I~iwDl~t~~~ 167 (701)
+++|++||+.++ +.+.++. +...|.+|+|++ ++|++ +.+++|++||+.+++.
T Consensus 103 ----------------dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 166 (402)
T 2aq5_A 103 ----------------DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA 166 (402)
T ss_dssp ----------------TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE
T ss_pred ----------------CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc
Confidence 178999999998 6677776 477999999973 46666 5688999999999988
Q ss_pred eEEE--ecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchh
Q 005349 168 EYAI--LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (701)
Q Consensus 168 ~~tl--~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk 245 (701)
+.++ ..+.. ++ ..+++.. + +.
T Consensus 167 ~~~~~~~~~~~---------------~v----~~~~~~~-------------~--------------~~----------- 189 (402)
T 2aq5_A 167 VLTLGPDVHPD---------------TI----YSVDWSR-------------D--------------GA----------- 189 (402)
T ss_dssp EEEECTTTCCS---------------CE----EEEEECT-------------T--------------SS-----------
T ss_pred cEEEecCCCCC---------------ce----EEEEECC-------------C--------------CC-----------
Confidence 8777 33321 11 1123321 0 00
Q ss_pred chhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEe-ecCCCC-
Q 005349 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF-RAHKSP- 323 (701)
Q Consensus 246 ~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~-~~H~~~- 323 (701)
.++++..||.|+|||+.+++.+..+ .+|...
T Consensus 190 -----------------------------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 222 (402)
T 2aq5_A 190 -----------------------------------------------LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR 222 (402)
T ss_dssp -----------------------------------------------CEEEEETTSEEEEEETTTTEEEEEEECSSCSSS
T ss_pred -----------------------------------------------EEEEEecCCcEEEEeCCCCceeeeeccCCCCCc
Confidence 1233456899999999999999999 799876
Q ss_pred eEEEEEcCCCCEEEEE---eCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEE-Ee
Q 005349 324 ISALCFDPSGILLVTA---SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMI-SS 399 (701)
Q Consensus 324 Is~laFSPdG~lLaTa---S~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAs-gS 399 (701)
+.+++|+|+|++|+++ +.||+ |+|||+.... ....+..+ . +...|.+++|+||+++|++ ++
T Consensus 223 ~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~~~-----------~~~~~~~~--~-~~~~v~~~~~s~~~~~l~~~g~ 287 (402)
T 2aq5_A 223 PVHAVFVSEGKILTTGFSRMSERQ-VALWDTKHLE-----------EPLSLQEL--D-TSSGVLLPFFDPDTNIVYLCGK 287 (402)
T ss_dssp CCEEEECSTTEEEEEEECTTCCEE-EEEEETTBCS-----------SCSEEEEC--C-CCSSCEEEEEETTTTEEEEEET
T ss_pred ceEEEEcCCCcEEEEeccCCCCce-EEEEcCcccc-----------CCceEEec--c-CCCceeEEEEcCCCCEEEEEEc
Confidence 9999999999999999 78886 9999998751 00222222 2 2235899999999999975 55
Q ss_pred CCCcEEEEecCCCCC-ceeecCC
Q 005349 400 SRGTSHLFAINPLGG-SVNFQPT 421 (701)
Q Consensus 400 ~dgTI~Iwdl~~~g~-~~~~~~H 421 (701)
.||+|+||++..... ...+..|
T Consensus 288 ~dg~i~i~d~~~~~~~~~~l~~~ 310 (402)
T 2aq5_A 288 GDSSIRYFEITSEAPFLHYLSMF 310 (402)
T ss_dssp TCSCEEEEEECSSTTCEEEEEEE
T ss_pred CCCeEEEEEecCCCcceEeeccc
Confidence 799999999987653 3344443
No 75
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.83 E-value=1.4e-18 Score=195.77 Aligned_cols=236 Identities=12% Similarity=0.116 Sum_probs=176.7
Q ss_pred CCcEEEEeccCCeEEEEecCCC---CeeEEeeeccCC-EEEEEEee--CCCCCccccCccccCCCEEEEEeCCCCcCCcc
Q 005349 17 TRRVLLLGYRSGFQVWDVEEAD---NVHDLVSRYDGP-VSFMQMLP--RPITSKRSRDKFAEVRPLLVFCADGSRSCGTK 90 (701)
Q Consensus 17 ~~~vL~~g~~~g~qVwdv~~~~---~~~elvs~~dG~-V~~l~~lp--~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~ 90 (701)
..+.|+.|.++.++|||+++.. .....+..|.+. |.++++.| +. .+|+.++.
T Consensus 29 dg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~--------------~~l~s~~~-------- 86 (615)
T 1pgu_A 29 TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS--------------QYLCSGDE-------- 86 (615)
T ss_dssp TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC--------------CEEEEEET--------
T ss_pred CCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCC--------------CEEEEecC--------
Confidence 3667778878889999999631 456666778999 99999987 43 25655442
Q ss_pred ccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCC--------cEEEEEe-cCCCEEEEEec--CCEEEEEeC-----
Q 005349 91 VQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQ--------SYVHMLK-FRSPIYSVRCS--SRVVAICQA----- 154 (701)
Q Consensus 91 ~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg--------~~v~tL~-f~s~V~sV~~s--~~~LaVa~~----- 154 (701)
+++|++||+.++ +.+.++. +...|.+++|+ +++|+++.+
T Consensus 87 -------------------------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 141 (615)
T 1pgu_A 87 -------------------------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNF 141 (615)
T ss_dssp -------------------------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCS
T ss_pred -------------------------CCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCc
Confidence 178999999865 6777776 47799999997 467777554
Q ss_pred CEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCc
Q 005349 155 AQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGS 234 (701)
Q Consensus 155 ~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~ 234 (701)
+.|++|| +.+.+..+..+.. ++ ..++|.. + +.
T Consensus 142 ~~v~~~d--~~~~~~~~~~~~~---------------~v----~~~~~~~-------------~--------------~~ 173 (615)
T 1pgu_A 142 GVFISWD--SGNSLGEVSGHSQ---------------RI----NACHLKQ-------------S--------------RP 173 (615)
T ss_dssp EEEEETT--TCCEEEECCSCSS---------------CE----EEEEECS-------------S--------------SS
T ss_pred cEEEEEE--CCCcceeeecCCc---------------cE----EEEEECC-------------C--------------CC
Confidence 4888888 5555555544421 01 1123321 0 00
Q ss_pred ceeehhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEE
Q 005349 235 RVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI 314 (701)
Q Consensus 235 ~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i 314 (701)
..++++..||.|+|||+.+++.+
T Consensus 174 ---------------------------------------------------------~~l~~~~~d~~v~vwd~~~~~~~ 196 (615)
T 1pgu_A 174 ---------------------------------------------------------MRSMTVGDDGSVVFYQGPPFKFS 196 (615)
T ss_dssp ---------------------------------------------------------CEEEEEETTTEEEEEETTTBEEE
T ss_pred ---------------------------------------------------------cEEEEEeCCCcEEEEeCCCccee
Confidence 01233456899999999999999
Q ss_pred EEeecCCC---CeEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec---cCCcccEEEEE
Q 005349 315 AQFRAHKS---PISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR---GLTNAVIQDIS 387 (701)
Q Consensus 315 ~~~~~H~~---~Is~laFSPd-G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r---G~~~a~I~~ia 387 (701)
..+.+|.. +|.+++|+|+ |++|++++.||+ |+|||+.++ ..+..+.. ++ ...|.+++
T Consensus 197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~--------------~~~~~~~~~~~~~-~~~v~~~~ 260 (615)
T 1pgu_A 197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSG--------------EFLKYIEDDQEPV-QGGIFALS 260 (615)
T ss_dssp EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTC--------------CEEEECCBTTBCC-CSCEEEEE
T ss_pred eeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCCC--------------CEeEEeccccccc-CCceEEEE
Confidence 99999999 9999999999 999999999998 899999876 56666633 43 34699999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCCCceeecCC
Q 005349 388 FSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (701)
Q Consensus 388 FSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H 421 (701)
|+ |+++|++++.|++|++||+........+..|
T Consensus 261 ~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 261 WL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp ES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred Ec-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 99 9999999999999999999876555566655
No 76
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.83 E-value=3.3e-20 Score=197.21 Aligned_cols=229 Identities=14% Similarity=0.108 Sum_probs=148.7
Q ss_pred CcEEEEe-ccCCeEEEEecCCC-CeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 005349 18 RRVLLLG-YRSGFQVWDVEEAD-NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (701)
Q Consensus 18 ~~vL~~g-~~~g~qVwdv~~~~-~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~ 95 (701)
.+.|+.| .++.++|||+.... .....+..|.++|.++++.|+. .+|+.++.
T Consensus 23 g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--------------~~l~s~s~------------- 75 (377)
T 3dwl_C 23 RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS--------------NRIVTCSQ------------- 75 (377)
T ss_dssp SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT--------------CCEEEEET-------------
T ss_pred CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC--------------CEEEEEeC-------------
Confidence 5566666 66779999999632 4455566789999999998742 24554442
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEECCCCc---EEEEE-ecCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCce-
Q 005349 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS---YVHML-KFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEI- 167 (701)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~---~v~tL-~f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~- 167 (701)
+++|++||+++++ .+..+ .+...|.+++|+ +++|++ +.+++|++||+.+.+.
T Consensus 76 --------------------d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 135 (377)
T 3dwl_C 76 --------------------DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW 135 (377)
T ss_dssp --------------------TSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred --------------------CCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence 1669999999987 44444 357799999996 455655 6788999999998763
Q ss_pred --eEEEec-CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhch
Q 005349 168 --EYAILT-NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 244 (701)
Q Consensus 168 --~~tl~t-~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~s 244 (701)
...+.. |.. ++ ..++|.. + +.
T Consensus 136 ~~~~~~~~~h~~---------------~v----~~~~~~~-------------~--------------~~---------- 159 (377)
T 3dwl_C 136 WVSKHLKRPLRS---------------TI----LSLDWHP-------------N--------------NV---------- 159 (377)
T ss_dssp CCCEEECSSCCS---------------CE----EEEEECT-------------T--------------SS----------
T ss_pred eeeeEeecccCC---------------Ce----EEEEEcC-------------C--------------CC----------
Confidence 444443 211 01 1122321 0 00
Q ss_pred hchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECC---------------
Q 005349 245 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIV--------------- 309 (701)
Q Consensus 245 k~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~--------------- 309 (701)
.++.+..||.|+|||+.
T Consensus 160 ------------------------------------------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 191 (377)
T 3dwl_C 160 ------------------------------------------------LLAAGCADRKAYVLSAYVRDVDAKPEASVWGS 191 (377)
T ss_dssp ------------------------------------------------EEEEEESSSCEEEEEECCSSCC-CCCSCSSCS
T ss_pred ------------------------------------------------EEEEEeCCCEEEEEEEEecccCCCcccccccc
Confidence 12334567889999985
Q ss_pred ---CCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEE
Q 005349 310 ---SKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDI 386 (701)
Q Consensus 310 ---s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~i 386 (701)
.++++..+ .|..+|.+++|+|+|++||+++.||+ |+|||+.++.. ....+..+. ++ ...|.++
T Consensus 192 ~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~----------~~~~~~~~~-~~-~~~v~~~ 257 (377)
T 3dwl_C 192 RLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPSAPEQ----------PPRALITVK-LS-QLPLRSL 257 (377)
T ss_dssp CCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEECSTTS----------CEEECCCEE-CS-SSCEEEE
T ss_pred ccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECCCCCC----------cceeeEeec-CC-CCceEEE
Confidence 35567777 99999999999999999999999997 99999987610 001134443 33 3459999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 387 SFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 387 aFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
+|+||+++|++++.++.+ +|+....
T Consensus 258 ~~s~~~~~l~~~~~~~~~-~~~~~~~ 282 (377)
T 3dwl_C 258 LWANESAIVAAGYNYSPI-LLQGNES 282 (377)
T ss_dssp EEEETTEEEEEESSSSEE-EECCCC-
T ss_pred EEcCCCCEEEEEcCCcEE-EEEeCCC
Confidence 999999999999877665 8877643
No 77
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.83 E-value=8.6e-20 Score=207.55 Aligned_cols=226 Identities=12% Similarity=0.084 Sum_probs=157.7
Q ss_pred eccCCeEEEEecCCCCee----EEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccccc
Q 005349 24 GYRSGFQVWDVEEADNVH----DLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATAC 99 (701)
Q Consensus 24 g~~~g~qVwdv~~~~~~~----elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~ 99 (701)
++++.++|||++.. +.. ..+..|.+.|..+++.|... +.....+||.++.
T Consensus 180 s~D~tI~iWd~~~~-~~~~~~~~~l~~~~~~V~~v~wsp~~~--------~~~~~~~LAs~s~----------------- 233 (524)
T 2j04_B 180 KHSSCIQIFKMNTS-TLHCVKVQTIVHSFGEVWDLKWHEGCH--------APHLVGCLSFVSQ----------------- 233 (524)
T ss_dssp --CEEEEEEEEETT-TCCEEEEEEEEECCCSEEEEEECSSCC--------CSSSSCEEEEEET-----------------
T ss_pred CCCceEEEEEccCC-CCCceEEEEEEecCCcEEEEEECCCCC--------CCCCCceEEEEec-----------------
Confidence 34556899999873 331 23455679999999988521 1111246665543
Q ss_pred CCCCCCCCCCCCCCCCCcEEEEEECCCCcE-----------EEEEec-CCCEEEEEec-CCEEEE-EeCCEEEEEECCCC
Q 005349 100 NGTSANYHDLGNGSSVPTVVHFYSLRSQSY-----------VHMLKF-RSPIYSVRCS-SRVVAI-CQAAQVHCFDAATL 165 (701)
Q Consensus 100 ~g~~~~~~~~~~~~~~~~tVriWdl~tg~~-----------v~tL~f-~s~V~sV~~s-~~~LaV-a~~~~I~iwDl~t~ 165 (701)
+++|+|||+.++++ ..++.. ...|.+++|+ +..|++ +.|++|++||+.+.
T Consensus 234 ----------------DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~ 297 (524)
T 2j04_B 234 ----------------EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDP 297 (524)
T ss_dssp ----------------TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBC
T ss_pred ----------------CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCC
Confidence 26799999988753 234543 5789999996 456666 67899999999976
Q ss_pred ce-eEEEecCCCccCCCCCCCCCcccceeeeccceE--EEcCCCceecCCCccCCcccccccccccccCCCcceeehhhh
Q 005349 166 EI-EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWL--AYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKE 242 (701)
Q Consensus 166 ~~-~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~L--Aya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~ 242 (701)
+. ..++..|.. ++ +-+ +|+. +|
T Consensus 298 ~~~~~~~~~H~~---------------~V----~sv~~~~s~---------------------------~g--------- 322 (524)
T 2j04_B 298 EVPSFYDQVHDS---------------YI----LSVSTAYSD---------------------------FE--------- 322 (524)
T ss_dssp SSCSEEEECSSS---------------CE----EEEEEECCT---------------------------TS---------
T ss_pred CCceEEeecccc---------------cE----EEEEEEcCC---------------------------CC---------
Confidence 43 344444421 11 011 1110 00
Q ss_pred chhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCC
Q 005349 243 SSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKS 322 (701)
Q Consensus 243 ~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~ 322 (701)
...+++++.||+|+|||+.+++++..+.+|..
T Consensus 323 ------------------------------------------------~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~ 354 (524)
T 2j04_B 323 ------------------------------------------------DTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR 354 (524)
T ss_dssp ------------------------------------------------CCEEEEEETTSEEEEECGGGHHHHCEEEEECS
T ss_pred ------------------------------------------------CeEEEEeccCCeEEEEECCCCCcccccccccc
Confidence 00234567899999999999888778888764
Q ss_pred --CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC
Q 005349 323 --PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 323 --~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
.|.+|+|+|+|..||+++.|++ |+|||+..+ .++..+. |+. ..|++|+|||||++||+|+.
T Consensus 355 ~~~v~~v~fsp~~~~l~s~~~d~t-v~lwd~~~~--------------~~~~~l~-gH~-~~V~sva~Sp~g~~l~Sgs~ 417 (524)
T 2j04_B 355 GSNLVPVVYCPQIYSYIYSDGASS-LRAVPSRAA--------------FAVHPLV-SRE-TTITAIGVSRLHPMVLAGSA 417 (524)
T ss_dssp CCSCCCEEEETTTTEEEEECSSSE-EEEEETTCT--------------TCCEEEE-ECS-SCEEEEECCSSCCBCEEEET
T ss_pred cCcccceEeCCCcCeEEEeCCCCc-EEEEECccc--------------ccceeee-cCC-CceEEEEeCCCCCeEEEEEC
Confidence 5889999999999999999986 999999876 3344553 443 46999999999999999999
Q ss_pred CCcEEEEecCC
Q 005349 401 RGTSHLFAINP 411 (701)
Q Consensus 401 dgTI~Iwdl~~ 411 (701)
||+|+||++..
T Consensus 418 Dgtv~lwd~~~ 428 (524)
T 2j04_B 418 DGSLIITNAAR 428 (524)
T ss_dssp TTEEECCBSCS
T ss_pred CCEEEEEechH
Confidence 99999999853
No 78
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.83 E-value=1.9e-19 Score=197.50 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=90.9
Q ss_pred cccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 295 PDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~-lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
+.+..+|.|++||+.. +.+..+++|..+|.+|+|+|++. +|++|+.||+ |+|||+...... ..+ .
T Consensus 225 ~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~-v~iwd~~~~~~~-----------~~~-~ 290 (435)
T 4e54_B 225 VTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDLRQVRGK-----------ASF-L 290 (435)
T ss_dssp EEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB-CCEEETTTCCSS-----------SCC-S
T ss_pred EEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcce-eeEEeccccccc-----------ceE-E
Confidence 3456789999999975 56778999999999999999986 8899999998 899999875110 011 1
Q ss_pred EeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCC
Q 005349 374 LQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (701)
Q Consensus 374 l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~ 423 (701)
...++ ...|.+++|+|||++|++++.||+|+|||+........+..|..
T Consensus 291 ~~~~h-~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 339 (435)
T 4e54_B 291 YSLPH-RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339 (435)
T ss_dssp BCCBC-SSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred Eeeec-cccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence 11233 34599999999999999999999999999998877777777753
No 79
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.83 E-value=4.6e-19 Score=192.16 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=85.0
Q ss_pred cccCCCCeEEEEECCCCcE----EEEeecCCC------------CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCC-CCCC
Q 005349 295 PDADNVGMVIVRDIVSKNV----IAQFRAHKS------------PISALCFDPSGILLVTASVQGHNINIFKIIP-GILG 357 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~~----i~~~~~H~~------------~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~-~~~~ 357 (701)
+++..||.|+|||+.+++. +..+..|.. +|.+|+|+|+|++|++++. |+ |+|||+.. +
T Consensus 243 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~--- 317 (447)
T 3dw8_B 243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMEN--- 317 (447)
T ss_dssp EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCS---
T ss_pred EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCc---
Confidence 4456789999999999886 789999986 9999999999999999999 76 99999986 3
Q ss_pred CCCccCCCCceeEEEEEeccCCc-----------c---cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCC
Q 005349 358 TSSACDAGTSYVHLYRLQRGLTN-----------A---VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 422 (701)
Q Consensus 358 ~~s~~~~~~~~~~l~~l~rG~~~-----------a---~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~ 422 (701)
..+..+. ++.. . .+..++|+||+++|++++.||+|+|||+... ....+..|.
T Consensus 318 -----------~~~~~~~-~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~ 383 (447)
T 3dw8_B 318 -----------RPVETYQ-VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK-RDITLEASR 383 (447)
T ss_dssp -----------SCSCCEE-SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC-CEEEEECCS
T ss_pred -----------cccceee-ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC-cceeeeecc
Confidence 2222221 2211 0 1345999999999999999999999999874 555676664
No 80
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.83 E-value=6.2e-19 Score=183.84 Aligned_cols=240 Identities=10% Similarity=0.040 Sum_probs=160.4
Q ss_pred CcEEEEeccCCeEEEEecCCCC--eeEEeeeccCCEEEEEEeeCCCCCccccCccccCCC-EEEEEeCCCCcCCccccCC
Q 005349 18 RRVLLLGYRSGFQVWDVEEADN--VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRP-LLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~--~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rp-llavv~~g~~~~~~~~~d~ 94 (701)
+.+++.+.++.++|||++.... ....+..|.++|.++.+.|+. . +|+.++.
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~l~~~~~------------ 77 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT--------------DLQIYVGTV------------ 77 (342)
T ss_dssp TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS--------------SEEEEEEET------------
T ss_pred CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC--------------CcEEEEEcC------------
Confidence 3455555667799999997431 122334689999999998742 3 4544432
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEEC-CCCcEEEEEe--cCCCEEEEEec-CCEEEE-EeCCEEEEEECCC-----
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSL-RSQSYVHMLK--FRSPIYSVRCS-SRVVAI-CQAAQVHCFDAAT----- 164 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl-~tg~~v~tL~--f~s~V~sV~~s-~~~LaV-a~~~~I~iwDl~t----- 164 (701)
+++|++||+ .+++...... +...|.+++|+ +++|++ +.++.|++||+.+
T Consensus 78 ---------------------dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 78 ---------------------QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp ---------------------TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBC
T ss_pred ---------------------CCeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccccc
Confidence 166999999 8887643334 67799999998 566665 6789999999876
Q ss_pred ----CceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehh
Q 005349 165 ----LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYA 240 (701)
Q Consensus 165 ----~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a 240 (701)
.+.+.++. ++. .+ .-+++.
T Consensus 137 ~~~~~~~~~~~~-~~~---------------~v----~~~~~~------------------------------------- 159 (342)
T 1yfq_A 137 IAVKNLNSNNTK-VKN---------------KI----FTMDTN------------------------------------- 159 (342)
T ss_dssp EEEEESCSSSSS-SCC---------------CE----EEEEEC-------------------------------------
T ss_pred ccccCCeeeEEe-eCC---------------ce----EEEEec-------------------------------------
Confidence 22211111 000 00 011111
Q ss_pred hhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCC-Cc--EEEEe
Q 005349 241 KESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-KN--VIAQF 317 (701)
Q Consensus 241 ~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s-~~--~i~~~ 317 (701)
|+ .++.+..+|.|++||+.+ +. .....
T Consensus 160 ------------------------------~~--------------------~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 189 (342)
T 1yfq_A 160 ------------------------------SS--------------------RLIVGMNNSQVQWFRLPLCEDDNGTIEE 189 (342)
T ss_dssp ------------------------------SS--------------------EEEEEESTTEEEEEESSCCTTCCCEEEE
T ss_pred ------------------------------CC--------------------cEEEEeCCCeEEEEECCccccccceeee
Confidence 00 022345678999999998 54 34455
Q ss_pred ecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC--------cccEEEEEE
Q 005349 318 RAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT--------NAVIQDISF 388 (701)
Q Consensus 318 ~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~--------~a~I~~iaF 388 (701)
..|..+|.+++|+| +|++|++++.||+ |+||++....... ....++.+. ++. ...|.+++|
T Consensus 190 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~ 259 (342)
T 1yfq_A 190 SGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDY--------NSSKRFAFR-CHRLNLKDTNLAYPVNSIEF 259 (342)
T ss_dssp CSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCST--------TCTTCEEEE-CCCCCTTCCSSCCCEEEEEE
T ss_pred cCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCCCccc--------ccccceeee-cccccccccccceeEEEEEE
Confidence 68899999999999 9999999999997 9999987530000 001222332 221 236999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCCCceeecCC
Q 005349 389 SDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (701)
Q Consensus 389 SpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H 421 (701)
+||+++|++++.||+|+|||+........+..|
T Consensus 260 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 260 SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp CTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred cCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 999999999999999999999876555566665
No 81
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.2e-18 Score=189.62 Aligned_cols=177 Identities=14% Similarity=0.177 Sum_probs=130.6
Q ss_pred CcEEEEEECC--CCcEEEEEe---cCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeE----EEecCCCccCCCCC
Q 005349 116 PTVVHFYSLR--SQSYVHMLK---FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEY----AILTNPIVMGHPSA 183 (701)
Q Consensus 116 ~~tVriWdl~--tg~~v~tL~---f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~----tl~t~~~~~~~~~~ 183 (701)
+++|++||+. +++++.++. +...|.+|+|+ +++|++ ..++.|++||+.+.+... .+..+..
T Consensus 124 dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~------- 196 (450)
T 2vdu_B 124 DKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVS------- 196 (450)
T ss_dssp GTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSS-------
T ss_pred CCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccC-------
Confidence 4889999999 899998884 56899999997 467766 567899999998876432 2222210
Q ss_pred CCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecc
Q 005349 184 GGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 263 (701)
Q Consensus 184 ~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls 263 (701)
++ ..|++..+. ..+
T Consensus 197 --------~v----~~~~~sp~~------------------------~~~------------------------------ 210 (450)
T 2vdu_B 197 --------ML----TDVHLIKDS------------------------DGH------------------------------ 210 (450)
T ss_dssp --------CE----EEEEEEECT------------------------TSC------------------------------
T ss_pred --------ce----EEEEEcCCC------------------------CCC------------------------------
Confidence 01 112222100 000
Q ss_pred cccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEE-eecCCCCeEEEEEcCCCCEEEEEeCC
Q 005349 264 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQ 342 (701)
Q Consensus 264 ~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~-~~~H~~~Is~laFSPdG~lLaTaS~d 342 (701)
..++++..|+.|+|||+.+++++.. +.+|..+|.+++|+ ||++|++++.|
T Consensus 211 ----------------------------~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d 261 (450)
T 2vdu_B 211 ----------------------------QFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD 261 (450)
T ss_dssp ----------------------------EEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred ----------------------------cEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence 0223455689999999999998887 56999999999999 99999999999
Q ss_pred CcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc-----------------------CCcccEEEEEEcCCCCEEEEEe
Q 005349 343 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG-----------------------LTNAVIQDISFSDDSNWIMISS 399 (701)
Q Consensus 343 Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG-----------------------~~~a~I~~iaFSpDg~~lAsgS 399 (701)
|+ |+|||+.++ .++..+..+ .....|.+|+|+||+++|++++
T Consensus 262 ~~-v~vwd~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 262 DK-IFAWDWKTG--------------KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp SE-EEEEETTTC--------------CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred Ce-EEEEECCCC--------------cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 97 999999887 444554321 1123489999999999999999
Q ss_pred -CCCcEEEEec
Q 005349 400 -SRGTSHLFAI 409 (701)
Q Consensus 400 -~dgTI~Iwdl 409 (701)
.|++|+||++
T Consensus 327 ~~d~~i~iw~~ 337 (450)
T 2vdu_B 327 EATKCIIILEM 337 (450)
T ss_dssp TTCSEEEEEEE
T ss_pred CCCCeEEEEEe
Confidence 8999999999
No 82
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.83 E-value=2.4e-19 Score=190.64 Aligned_cols=227 Identities=15% Similarity=0.177 Sum_probs=166.1
Q ss_pred ccCCeEEEEecCCCCeeEEeeeccCCEEEEEEee-CCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCC
Q 005349 25 YRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLP-RPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTS 103 (701)
Q Consensus 25 ~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp-~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~ 103 (701)
.+..++||+++. +...+++..|.++|.++++.| ++ .+|+.++.
T Consensus 21 ~~~~~~v~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~--------------~~l~~~~~--------------------- 64 (408)
T 4a11_B 21 AESTRRVLGLEL-NKDRDVERIHGGGINTLDIEPVEG--------------RYMLSGGS--------------------- 64 (408)
T ss_dssp HHHHHHHHTEEE-CTTEEECCCCSSCEEEEEECTTTC--------------CEEEEEET---------------------
T ss_pred ccCcceeecccc-CcceeeeeccCCcEEEEEEecCCC--------------CEEEEEcC---------------------
Confidence 344578899886 567778888999999999987 42 35655542
Q ss_pred CCCCCCCCCCCCCcEEEEEECCCCcEEEEEe--------------cCCCEEEEEecC---CEEEE-EeCCEEEEEECCCC
Q 005349 104 ANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK--------------FRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATL 165 (701)
Q Consensus 104 ~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~--------------f~s~V~sV~~s~---~~LaV-a~~~~I~iwDl~t~ 165 (701)
+++|++||+.+++....+. +...|.+++|++ ++|++ +.++.|++||+.++
T Consensus 65 ------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 132 (408)
T 4a11_B 65 ------------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL 132 (408)
T ss_dssp ------------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT
T ss_pred ------------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC
Confidence 1669999999998766665 677999999964 45665 56899999999998
Q ss_pred ceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchh
Q 005349 166 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (701)
Q Consensus 166 ~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk 245 (701)
+....+..... + ..+++.. . ...+
T Consensus 133 ~~~~~~~~~~~----------------~----~~~~~~~-------------~-----------~~~~------------ 156 (408)
T 4a11_B 133 QTADVFNFEET----------------V----YSHHMSP-------------V-----------STKH------------ 156 (408)
T ss_dssp EEEEEEECSSC----------------E----EEEEECS-------------S-----------CSSC------------
T ss_pred ccceeccCCCc----------------e----eeeEeec-------------C-----------CCCC------------
Confidence 87766642110 0 0112210 0 0000
Q ss_pred chhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeE
Q 005349 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS 325 (701)
Q Consensus 246 ~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is 325 (701)
..++.+..+|.|++||+.+++.+..+.+|..+|.
T Consensus 157 ----------------------------------------------~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 157 ----------------------------------------------CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL 190 (408)
T ss_dssp ----------------------------------------------CEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred ----------------------------------------------cEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence 0123345678999999999999999999999999
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe--------------ccCCcccEEEEEEcC
Q 005349 326 ALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ--------------RGLTNAVIQDISFSD 390 (701)
Q Consensus 326 ~laFSPdG~-lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~--------------rG~~~a~I~~iaFSp 390 (701)
+++|+|+|. +|++++.||+ |++||+.... ..+..+. .+ +...|.+++|+|
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~-i~i~d~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 255 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSR-VKLWDVRRAS-------------GCLITLDQHNGKKSQAVESANTA-HNGKVNGLCFTS 255 (408)
T ss_dssp EEEECSSCTTEEEEEETTSC-EEEEETTCSS-------------CCSEECCTTTTCSCCCTTTSSCS-CSSCEEEEEECT
T ss_pred EEEECCCCCcEEEEEcCCCc-EEEEECCCCC-------------cccccccccccccceeecccccc-ccCceeEEEEcC
Confidence 999999999 6999999998 9999998651 0111110 12 234599999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCce
Q 005349 391 DSNWIMISSSRGTSHLFAINPLGGSV 416 (701)
Q Consensus 391 Dg~~lAsgS~dgTI~Iwdl~~~g~~~ 416 (701)
|+++|++++.||+|+|||+.......
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTL 281 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCC
T ss_pred CCCEEEEecCCCeEEEEECCCCccce
Confidence 99999999999999999998765433
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.82 E-value=3.7e-20 Score=196.84 Aligned_cols=199 Identities=11% Similarity=0.132 Sum_probs=129.2
Q ss_pred cEEEEEECCCC--cEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCc---eeEEEecCCCccCCCCCCCCC
Q 005349 117 TVVHFYSLRSQ--SYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLE---IEYAILTNPIVMGHPSAGGIG 187 (701)
Q Consensus 117 ~tVriWdl~tg--~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~---~~~tl~t~~~~~~~~~~~~~~ 187 (701)
++|+|||+.++ +++.++.. ...|.+++|+ +++|++ +.|++|++||+.+.+ ....+..+..
T Consensus 33 ~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~----------- 101 (377)
T 3dwl_C 33 NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR----------- 101 (377)
T ss_dssp SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS-----------
T ss_pred CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC-----------
Confidence 67999999999 67777764 6799999997 456666 568999999999876 3333322211
Q ss_pred cccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccc
Q 005349 188 IGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCS 267 (701)
Q Consensus 188 ~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~ 267 (701)
++ ..+++.
T Consensus 102 ----~v----~~~~~~---------------------------------------------------------------- 109 (377)
T 3dwl_C 102 ----AA----TFVRWS---------------------------------------------------------------- 109 (377)
T ss_dssp ----CE----EEEECC----------------------------------------------------------------
T ss_pred ----ce----EEEEEC----------------------------------------------------------------
Confidence 01 112221
Q ss_pred cccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc---EEEEeec-CCCCeEEEEEcCCCCEEEEEeCCC
Q 005349 268 EFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN---VIAQFRA-HKSPISALCFDPSGILLVTASVQG 343 (701)
Q Consensus 268 ~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~---~i~~~~~-H~~~Is~laFSPdG~lLaTaS~dG 343 (701)
|++ ..++.+..||.|+|||+.+++ .+..+.. |...|.+++|+|+|++|++++.||
T Consensus 110 ---~~~------------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 168 (377)
T 3dwl_C 110 ---PNE------------------DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR 168 (377)
T ss_dssp ---TTS------------------SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred ---CCC------------------CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence 000 023345678999999999887 4778887 999999999999999999999999
Q ss_pred cEEEEEEcCCCCCCCCC-c---cCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCC----c
Q 005349 344 HNINIFKIIPGILGTSS-A---CDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG----S 415 (701)
Q Consensus 344 t~I~Iwdl~~~~~~~~s-~---~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~----~ 415 (701)
+ |+|||+......... . .........+..+ ++ ...|.+++|+||+++||+++.||+|+|||+..... .
T Consensus 169 ~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 244 (377)
T 3dwl_C 169 K-AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PS-GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL 244 (377)
T ss_dssp C-EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CC-SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred E-EEEEEEEecccCCCccccccccccchhhhhhcc--cC-CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceee
Confidence 8 899999643100000 0 0000112344444 43 34599999999999999999999999999988766 4
Q ss_pred eeecCCCC
Q 005349 416 VNFQPTDA 423 (701)
Q Consensus 416 ~~~~~H~~ 423 (701)
..+..|..
T Consensus 245 ~~~~~~~~ 252 (377)
T 3dwl_C 245 ITVKLSQL 252 (377)
T ss_dssp CCEECSSS
T ss_pred EeecCCCC
Confidence 45566643
No 84
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3e-19 Score=194.23 Aligned_cols=114 Identities=19% Similarity=0.259 Sum_probs=96.9
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 294 FPDADNVGMVIVRDIVSKNVIAQFRA--HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~i~~~~~--H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
++.+..||.|++||+.+++++..++. |..+|.+|+|+|+|++|++|+.||+ |+|||+..+ ..+
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~--------------~~~ 249 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI-IDIWDIRFN--------------VLI 249 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC-EEEEETTTT--------------EEE
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe-EEEEEcCCc--------------cEE
Confidence 44567789999999999999999998 8999999999999999999999998 999999876 666
Q ss_pred EEEeccCCcccEEEEEEc----CCCCEEEEEeCCCcEEEEecCCCCCceeecCCCC
Q 005349 372 YRLQRGLTNAVIQDISFS----DDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (701)
Q Consensus 372 ~~l~rG~~~a~I~~iaFS----pDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~ 423 (701)
..+..++. ..|.+++|+ +|+++|++++.||+|+|||+........+..|..
T Consensus 250 ~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (437)
T 3gre_A 250 RSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE 304 (437)
T ss_dssp EEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred EEEecCCC-CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence 66643433 469999554 5789999999999999999988776777777753
No 85
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.82 E-value=6.3e-18 Score=176.79 Aligned_cols=230 Identities=13% Similarity=0.182 Sum_probs=164.2
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
+.++..+.++.++|||+.. ++....+. +.++|..+.+.|+. .+++++.....
T Consensus 87 ~~l~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~--------------~~l~~~~~~~~------------ 138 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSN-GQCVATWK-SPVPVKRVEFSPCG--------------NYFLAILDNVM------------ 138 (369)
T ss_dssp SEEEEEETTTEEEEEETTT-CCEEEEEE-CSSCEEEEEECTTS--------------SEEEEEECCBT------------
T ss_pred CEEEEEeCCCeEEEEECCC-CcEEEEee-cCCCeEEEEEccCC--------------CEEEEecCCcc------------
Confidence 4455555666799999987 45555555 78999999998742 35555553210
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEE-----------EEEec-CC--CEEEEEec--CCEEEE-EeCCEEEEE
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYV-----------HMLKF-RS--PIYSVRCS--SRVVAI-CQAAQVHCF 160 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v-----------~tL~f-~s--~V~sV~~s--~~~LaV-a~~~~I~iw 160 (701)
..++.|++||+++++.. ..+.. .. .|.+++++ +++|++ ..++.|++|
T Consensus 139 ----------------~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 202 (369)
T 3zwl_B 139 ----------------KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202 (369)
T ss_dssp ----------------TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred ----------------CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEE
Confidence 02378999999877532 22222 22 89999996 456766 568899999
Q ss_pred ECCC-CceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeeh
Q 005349 161 DAAT-LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHY 239 (701)
Q Consensus 161 Dl~t-~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~ 239 (701)
|+.+ .+....+..+.. ++ ..+++.. + +.
T Consensus 203 d~~~~~~~~~~~~~~~~---------------~v----~~~~~~~-------------~--------------~~----- 231 (369)
T 3zwl_B 203 DVSNNYEYVDSIDLHEK---------------SI----SDMQFSP-------------D--------------LT----- 231 (369)
T ss_dssp ETTTTTEEEEEEECCSS---------------CE----EEEEECT-------------T--------------SS-----
T ss_pred ECCCCcEeEEEEecCCC---------------ce----eEEEECC-------------C--------------CC-----
Confidence 9998 666666655421 11 1123321 0 00
Q ss_pred hhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeec
Q 005349 240 AKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA 319 (701)
Q Consensus 240 a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~ 319 (701)
.++.+..+|.|++||+.+++.+..+.
T Consensus 232 -----------------------------------------------------~l~~~~~d~~i~v~d~~~~~~~~~~~- 257 (369)
T 3zwl_B 232 -----------------------------------------------------YFITSSRDTNSFLVDVSTLQVLKKYE- 257 (369)
T ss_dssp -----------------------------------------------------EEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred -----------------------------------------------------EEEEecCCceEEEEECCCCceeeeec-
Confidence 12234567899999999999998888
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCc-------------EEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEE
Q 005349 320 HKSPISALCFDPSGILLVTASVQGH-------------NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDI 386 (701)
Q Consensus 320 H~~~Is~laFSPdG~lLaTaS~dGt-------------~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~i 386 (701)
|..++.+++|+|+|++|++++.++. .+++||+.++ ..+..+. ++. ..|.++
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--------------~~~~~~~-~~~-~~v~~~ 321 (369)
T 3zwl_B 258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE--------------EEIGRVQ-GHF-GPLNTV 321 (369)
T ss_dssp CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC--------------CEEEEEE-CCS-SCEEEE
T ss_pred CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC--------------cchhhee-ccc-CcEEEE
Confidence 7789999999999999999999873 4899999876 5555663 443 459999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 387 SFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 387 aFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
+|+||+++|++++.||+|+||+++..
T Consensus 322 ~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 322 AISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EECTTSSEEEEEETTSEEEEEEECHH
T ss_pred EECCCCCEEEEEcCCCeEEEEECccc
Confidence 99999999999999999999999753
No 86
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.82 E-value=3.3e-18 Score=176.95 Aligned_cols=107 Identities=14% Similarity=0.310 Sum_probs=91.5
Q ss_pred cCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r 376 (701)
+..+|.|++||+.+++.+..++.|..+|.+++|+|+|++|++++.||+ |++||+..+ ..+..+.
T Consensus 159 ~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~--------------~~~~~~~- 222 (337)
T 1gxr_A 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREG--------------RQLQQHD- 222 (337)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTT--------------EEEEEEE-
T ss_pred EeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc-EEEEECCCC--------------ceEeeec-
Confidence 456789999999999999999999999999999999999999999997 999999876 4555543
Q ss_pred cCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCC
Q 005349 377 GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 422 (701)
Q Consensus 377 G~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~ 422 (701)
....|.+++|+||+++|++++.|++|++|++... ....+..|.
T Consensus 223 --~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~ 265 (337)
T 1gxr_A 223 --FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-DKYQLHLHE 265 (337)
T ss_dssp --CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-CEEEECCCS
T ss_pred --CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-CeEEEcCCc
Confidence 2345999999999999999999999999999864 344555554
No 87
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.2e-18 Score=184.76 Aligned_cols=102 Identities=11% Similarity=0.140 Sum_probs=79.6
Q ss_pred ccCCCCeEEEEECCCCcEE-EEeec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 296 DADNVGMVIVRDIVSKNVI-AQFRA-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~~~i-~~~~~-H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
++..||.|+|||+.+++.+ ..|+. |..+|.+|+|+|+|.+|++++. ++ |+|||+.... .+..
T Consensus 187 sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~-v~iwd~~~~~--------------~~~~ 250 (343)
T 3lrv_A 187 LYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QT-VVCFDLRKDV--------------GTLA 250 (343)
T ss_dssp EECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SB-EEEEETTSST--------------TCBS
T ss_pred EEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-Ce-EEEEEcCCCC--------------ccee
Confidence 3567899999999999887 88998 9999999999999999999994 45 9999998751 1111
Q ss_pred Eec--cCCcccE--EEEEEcCCCCEEEEEeC-CCcEEEEecCCCCC
Q 005349 374 LQR--GLTNAVI--QDISFSDDSNWIMISSS-RGTSHLFAINPLGG 414 (701)
Q Consensus 374 l~r--G~~~a~I--~~iaFSpDg~~lAsgS~-dgTI~Iwdl~~~g~ 414 (701)
+.. ++ ...+ .+++|+|||++|++++. |++++||++.....
T Consensus 251 ~~~~~~~-~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 251 YPTYTIP-EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp SCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred ecccccc-cccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 100 00 0112 47999999999999999 99999999976543
No 88
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.7e-19 Score=189.23 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=94.1
Q ss_pred cccCCCCeEEEEECCCCcEEEEeecC------CCCeEEEEEcCCC-CEEEEEeCCC---cEEEEEEcCCCCCCCCCccCC
Q 005349 295 PDADNVGMVIVRDIVSKNVIAQFRAH------KSPISALCFDPSG-ILLVTASVQG---HNINIFKIIPGILGTSSACDA 364 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~~i~~~~~H------~~~Is~laFSPdG-~lLaTaS~dG---t~I~Iwdl~~~~~~~~s~~~~ 364 (701)
+++..+|.|+|||+.+++.+..+..| ..+|.+++|+|+| .+|++++.|| + |++||+..+.
T Consensus 182 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~-i~~~d~~~~~--------- 251 (416)
T 2pm9_A 182 ASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS-ILIWDLRNAN--------- 251 (416)
T ss_dssp EEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC-CCEEETTSTT---------
T ss_pred EEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce-EEEEeCCCCC---------
Confidence 44567899999999999999999877 7899999999997 6999999998 7 8999998741
Q ss_pred CCceeEEEEEeccCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCc
Q 005349 365 GTSYVHLYRLQRGLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 425 (701)
Q Consensus 365 ~~~~~~l~~l~rG~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~~ 425 (701)
..+..+..++ ...|.+++|+| |+++|++++.||+|+|||+........+..|...+
T Consensus 252 ----~~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v 308 (416)
T 2pm9_A 252 ----TPLQTLNQGH-QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC 308 (416)
T ss_dssp ----SCSBCCCSCC-SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCC
T ss_pred ----CCcEEeecCc-cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCce
Confidence 1122232143 34599999999 99999999999999999998876666777775443
No 89
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.8e-18 Score=180.83 Aligned_cols=244 Identities=11% Similarity=0.118 Sum_probs=164.9
Q ss_pred CcEEEEec----cCCeEEEEecCCCCeeEE-eeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCcccc
Q 005349 18 RRVLLLGY----RSGFQVWDVEEADNVHDL-VSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (701)
Q Consensus 18 ~~vL~~g~----~~g~qVwdv~~~~~~~el-vs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~ 92 (701)
..+++.|. ++.++|||++. ++...+ ...|.++|.++.+.|+.. ...+|+.++.
T Consensus 31 ~~l~~~~s~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-----------~~~~l~~~~~---------- 88 (357)
T 3i2n_A 31 AKFVTMGNFARGTGVIQLYEIQH-GDLKLLREIEKAKPIKCGTFGATSL-----------QQRYLATGDF---------- 88 (357)
T ss_dssp SEEEEEEC--CCCEEEEEEEECS-SSEEEEEEEEESSCEEEEECTTCCT-----------TTCCEEEEET----------
T ss_pred ceEEEecCccCCCcEEEEEeCCC-CcccceeeecccCcEEEEEEcCCCC-----------CCceEEEecC----------
Confidence 45666664 56799999997 444433 336889999999887410 0124554442
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCc-EEEEEe-cCCCEEEEEe------c--CCEEEE-EeCCEEEEEE
Q 005349 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQS-YVHMLK-FRSPIYSVRC------S--SRVVAI-CQAAQVHCFD 161 (701)
Q Consensus 93 d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~-~v~tL~-f~s~V~sV~~------s--~~~LaV-a~~~~I~iwD 161 (701)
+++|++||+++++ .+.++. +...|.++.+ + +++|++ +.++.|++||
T Consensus 89 -----------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd 145 (357)
T 3i2n_A 89 -----------------------GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWD 145 (357)
T ss_dssp -----------------------TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred -----------------------CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence 1669999999998 888886 4678999965 2 346666 5688999999
Q ss_pred CCCCc-eeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehh
Q 005349 162 AATLE-IEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYA 240 (701)
Q Consensus 162 l~t~~-~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a 240 (701)
+.+.+ ....+..+..... .++ .-+++.. .+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~-----------~~v----~~~~~~~--------------------~~-------------- 176 (357)
T 3i2n_A 146 PRQKDDPVANMEPVQGENK-----------RDC----WTVAFGN--------------------AY-------------- 176 (357)
T ss_dssp TTSCSSCSEEECCCTTSCC-----------CCE----EEEEEEC--------------------CC--------------
T ss_pred CCCCCCcceeccccCCCCC-----------Cce----EEEEEEe--------------------cc--------------
Confidence 99886 5555544321000 000 0112110 00
Q ss_pred hhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecC
Q 005349 241 KESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH 320 (701)
Q Consensus 241 ~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H 320 (701)
.|+ ...++.+..+|.|++||+.+++.+ ....|
T Consensus 177 -----------------------------~~~------------------~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~ 208 (357)
T 3i2n_A 177 -----------------------------NQE------------------ERVVCAGYDNGDIKLFDLRNMALR-WETNI 208 (357)
T ss_dssp -----------------------------C-C------------------CCEEEEEETTSEEEEEETTTTEEE-EEEEC
T ss_pred -----------------------------CCC------------------CCEEEEEccCCeEEEEECccCcee-eecCC
Confidence 000 012334557899999999998874 45788
Q ss_pred CCCeEEEEEcC---CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCC-EEE
Q 005349 321 KSPISALCFDP---SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIM 396 (701)
Q Consensus 321 ~~~Is~laFSP---dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~-~lA 396 (701)
..+|.+++|+| ++.+|++++.||+ |+|||+..+... .......+ .++ ...|.+++|+||++ +|+
T Consensus 209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~---------~~~~~~~~-~~~-~~~v~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 209 KNGVCSLEFDRKDISMNKLVATSLEGK-FHVFDMRTQHPT---------KGFASVSE-KAH-KSTVWQVRHLPQNRELFL 276 (357)
T ss_dssp SSCEEEEEESCSSSSCCEEEEEESTTE-EEEEEEEEEETT---------TEEEEEEE-ECC-SSCEEEEEEETTEEEEEE
T ss_pred CCceEEEEcCCCCCCCCEEEEECCCCe-EEEEeCcCCCcc---------cceeeecc-CCC-cCCEEEEEECCCCCcEEE
Confidence 99999999999 9999999999997 999999765100 00111122 243 34699999999999 899
Q ss_pred EEeCCCcEEEEecCCCCCc
Q 005349 397 ISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 397 sgS~dgTI~Iwdl~~~g~~ 415 (701)
+++.||+|+|||+......
T Consensus 277 ~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 277 TAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EEETTSEEEEEEEECCSCC
T ss_pred EEeCCCcEEEeecCCCccc
Confidence 9999999999999875544
No 90
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.81 E-value=2.1e-19 Score=221.28 Aligned_cols=243 Identities=16% Similarity=0.224 Sum_probs=175.2
Q ss_pred CcEEEEecc-CCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGYR-SGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~~-~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
...+++|.. +.+++||+.. +.....+..|.+.|.++.+.|+. .+|+.++.
T Consensus 973 g~~l~~g~~~g~i~i~d~~~-~~~~~~~~~h~~~v~~l~~s~dg--------------~~l~s~~~-------------- 1023 (1249)
T 3sfz_A 973 LEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAVRHIQFTADG--------------KTLISSSE-------------- 1023 (1249)
T ss_dssp SSEEEEEETTSCCEEEETTT-TSCEEECCCCSSCCCCEEECSSS--------------SCEEEECS--------------
T ss_pred CCEEEEEcCCCCEEEEEcCC-CceeeecccCCCceEEEEECCCC--------------CEEEEEcC--------------
Confidence 445555554 5599999987 45666666789999999998743 23443332
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEEeCCEEEEEECCCCceeEEEecC
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTN 174 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa~~~~I~iwDl~t~~~~~tl~t~ 174 (701)
+++|++||+.+++++....+...|.++.++ +++++++.+++|++||+.+++...++..+
T Consensus 1024 -------------------dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 1084 (1249)
T 3sfz_A 1024 -------------------DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCH 1084 (1249)
T ss_dssp -------------------SSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECC
T ss_pred -------------------CCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEccc
Confidence 167999999999988777778899999996 35666688999999999999988887765
Q ss_pred CCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEc
Q 005349 175 PIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL 254 (701)
Q Consensus 175 ~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~l 254 (701)
... +.. ++++. + +.
T Consensus 1085 ~~~------------v~~-------~~~s~-------------d--------------~~-------------------- 1098 (1249)
T 3sfz_A 1085 QGT------------VLS-------CAISS-------------D--------------AT-------------------- 1098 (1249)
T ss_dssp SSC------------CCC-------EEECS-------------S--------------SS--------------------
T ss_pred CCc------------EEE-------EEECC-------------C--------------CC--------------------
Confidence 321 111 22221 0 00
Q ss_pred CCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCC
Q 005349 255 GDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGI 334 (701)
Q Consensus 255 Gd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~ 334 (701)
.++++..||.|+|||+.+++++..+.+|..+|.+++|+|||+
T Consensus 1099 --------------------------------------~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A 1099 --------------------------------------KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp --------------------------------------SCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSS
T ss_pred --------------------------------------EEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCC
Confidence 123355689999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 005349 335 LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (701)
Q Consensus 335 lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~ 414 (701)
+|||++.||+ |+|||+.++..-... ..... .....++ ...|.+++|||||++|++++ |+|++||+.+...
T Consensus 1141 ~lat~~~dg~-i~vwd~~~~~~~~~~-----~~~~~-~~~~~~~-~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1141 LLATGDDNGE-IRIWNVSDGQLLHSC-----APISV-EEGTATH-GGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp EEEEEETTSC-CCEEESSSSCCCCCC-----CCCC--------C-CSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBC
T ss_pred EEEEEeCCCE-EEEEECCCCceEEEe-----ccccc-ccccccc-CceEEEEEECCCCCEEEECC--CeEEEEECCCCce
Confidence 9999999998 999999876210000 00000 0001122 34599999999999999986 8999999988766
Q ss_pred ceeecCCC
Q 005349 415 SVNFQPTD 422 (701)
Q Consensus 415 ~~~~~~H~ 422 (701)
...+..|.
T Consensus 1211 ~~~~~~~~ 1218 (1249)
T 3sfz_A 1211 SQTFYTNG 1218 (1249)
T ss_dssp CCCCCCSS
T ss_pred eeeeeccC
Confidence 66666664
No 91
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.9e-18 Score=178.64 Aligned_cols=213 Identities=13% Similarity=0.194 Sum_probs=152.3
Q ss_pred CeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcE
Q 005349 39 NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTV 118 (701)
Q Consensus 39 ~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~t 118 (701)
.+..++..|.++|.++++.|+. .+|+.++. +++
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~--------------~~l~~~~~---------------------------------dg~ 34 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYG--------------KRLATCSS---------------------------------DKT 34 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSS--------------SEEEEEET---------------------------------TSC
T ss_pred CccEEecCCcccEEEEEEcCCC--------------CEEEEEEC---------------------------------CCc
Confidence 3456778899999999998742 35665542 166
Q ss_pred EEEEECC--CCcEEEEEe-cCCCEEEEEec----CCEEEE-EeCCEEEEEECCCCc--eeEEEecCCCccCCCCCCCCCc
Q 005349 119 VHFYSLR--SQSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGI 188 (701)
Q Consensus 119 VriWdl~--tg~~v~tL~-f~s~V~sV~~s----~~~LaV-a~~~~I~iwDl~t~~--~~~tl~t~~~~~~~~~~~~~~~ 188 (701)
|+|||+. +++.+.++. +...|.+|+|+ +++|++ +.|++|++||+.+.+ ....+..+..
T Consensus 35 i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~------------ 102 (379)
T 3jrp_A 35 IKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA------------ 102 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS------------
T ss_pred EEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCc------------
Confidence 9999998 667777776 46799999996 567776 568899999999886 4444433311
Q ss_pred ccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccc
Q 005349 189 GYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 268 (701)
Q Consensus 189 ~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~ 268 (701)
++ ..+++.. .. .+
T Consensus 103 ---~v----~~~~~~~-------------~~------------~~----------------------------------- 115 (379)
T 3jrp_A 103 ---SV----NSVQWAP-------------HE------------YG----------------------------------- 115 (379)
T ss_dssp ---CE----EEEEECC-------------GG------------GC-----------------------------------
T ss_pred ---ce----EEEEeCC-------------CC------------CC-----------------------------------
Confidence 11 1123321 00 00
Q ss_pred ccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC--cEEEEeecCCCCeEEEEEcC-------------CC
Q 005349 269 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFRAHKSPISALCFDP-------------SG 333 (701)
Q Consensus 269 ~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~--~~i~~~~~H~~~Is~laFSP-------------dG 333 (701)
..++.+..||.|+|||+.++ .....+.+|..+|.+++|+| ++
T Consensus 116 -----------------------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T 3jrp_A 116 -----------------------PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 172 (379)
T ss_dssp -----------------------SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTT
T ss_pred -----------------------CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCC
Confidence 01233456899999999987 34557789999999999999 79
Q ss_pred CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCC---CCEEEEEeCCCcEEEEecC
Q 005349 334 ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD---SNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 334 ~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpD---g~~lAsgS~dgTI~Iwdl~ 410 (701)
.+|++++.||+ |+|||+..+. .....+..+ .++. ..|.+++|+|| +++|++++.||+|+|||+.
T Consensus 173 ~~l~~~~~dg~-i~i~d~~~~~----------~~~~~~~~~-~~h~-~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 173 RKFVTGGADNL-VKIWKYNSDA----------QTYVLESTL-EGHS-DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp CEEEEEETTSC-EEEEEEETTT----------TEEEEEEEE-CCCS-SCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred CEEEEEeCCCe-EEEEEecCCC----------cceeeEEEE-eccc-CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 99999999998 9999998651 111233444 3443 46999999999 9999999999999999998
Q ss_pred CCC
Q 005349 411 PLG 413 (701)
Q Consensus 411 ~~g 413 (701)
...
T Consensus 240 ~~~ 242 (379)
T 3jrp_A 240 NEQ 242 (379)
T ss_dssp STT
T ss_pred CCC
Confidence 753
No 92
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.81 E-value=1.5e-18 Score=185.86 Aligned_cols=118 Identities=13% Similarity=0.144 Sum_probs=86.0
Q ss_pred ccccCCCCe-EEEEECCCCcEEEEee-c-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCc-cC-----C
Q 005349 294 FPDADNVGM-VIVRDIVSKNVIAQFR-A-HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSA-CD-----A 364 (701)
Q Consensus 294 ~~~~~~dG~-V~IwDl~s~~~i~~~~-~-H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~-~~-----~ 364 (701)
++++..||+ |+|||+.+++++..|+ + |..+|.+|+|+|||++||+++.||+ |+|||+.......... .. .
T Consensus 210 l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 210 VATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp EEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCSCCCSEETTTTEECCC
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCCCcccccccceeeccc
Confidence 445678897 9999999999999998 5 9999999999999999999999997 9999997652110000 00 0
Q ss_pred CCc--eeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 005349 365 GTS--YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 365 ~~~--~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g 413 (701)
... ....+.+..+. ......++|++|+++|++++.||++++|++...+
T Consensus 289 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 289 FQSEWSLCNFKLSVDK-HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCSSCSEEEECCCCT-TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cccccceeEEEeccCC-CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 000 01112222221 1124679999999999999999999999987543
No 93
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.81 E-value=4.8e-19 Score=194.32 Aligned_cols=241 Identities=12% Similarity=0.115 Sum_probs=151.6
Q ss_pred CcEEEEec-cCCeEEEEecCCCCeeEEe--eeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 18 RRVLLLGY-RSGFQVWDVEEADNVHDLV--SRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 18 ~~vL~~g~-~~g~qVwdv~~~~~~~elv--s~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
..+|+.|. ++.++|||++.. +...++ ..|.++|.++++.|.. ..+|+.++.
T Consensus 132 ~~~lasGs~dg~i~lWd~~~~-~~~~~~~~~gH~~~V~~l~f~p~~-------------~~~l~s~s~------------ 185 (435)
T 4e54_B 132 PSTVAVGSKGGDIMLWNFGIK-DKPTFIKGIGAGGSITGLKFNPLN-------------TNQFYASSM------------ 185 (435)
T ss_dssp TTCEEEEETTSCEEEECSSCC-SCCEEECCCSSSCCCCEEEECSSC-------------TTEEEEECS------------
T ss_pred CCEEEEEeCCCEEEEEECCCC-CceeEEEccCCCCCEEEEEEeCCC-------------CCEEEEEeC------------
Confidence 44565554 566999999864 333333 3689999999998731 124443331
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec---CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCcee
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF---RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIE 168 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f---~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~ 168 (701)
+++|+|||++++.+...... ...+.+++|+ +++|++ +.++.|++||+.+ +.+
T Consensus 186 ---------------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~ 243 (435)
T 4e54_B 186 ---------------------EGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KEL 243 (435)
T ss_dssp ---------------------SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBC
T ss_pred ---------------------CCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-cee
Confidence 27799999987765443333 2357788886 567776 5688999999864 333
Q ss_pred EEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchh
Q 005349 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (701)
Q Consensus 169 ~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la 248 (701)
.++..|.. ++ ..++|.. . +.
T Consensus 244 ~~~~~h~~---------------~v----~~v~~~p-------------~--------------~~-------------- 263 (435)
T 4e54_B 244 WNLRMHKK---------------KV----THVALNP-------------C--------------CD-------------- 263 (435)
T ss_dssp CCSBCCSS---------------CE----EEEEECT-------------T--------------CS--------------
T ss_pred EEEecccc---------------eE----EeeeecC-------------C--------------Cc--------------
Confidence 33333311 11 1122220 0 00
Q ss_pred ceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEE---EeecCCCCeE
Q 005349 249 AGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIA---QFRAHKSPIS 325 (701)
Q Consensus 249 ~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~---~~~~H~~~Is 325 (701)
..++++..||.|+|||+.+.+... ...+|..+|.
T Consensus 264 -------------------------------------------~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~ 300 (435)
T 4e54_B 264 -------------------------------------------WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN 300 (435)
T ss_dssp -------------------------------------------SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEE
T ss_pred -------------------------------------------eEEEEecCcceeeEEecccccccceEEEeeecccccc
Confidence 012345578999999998865433 3358999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEEcCCCCC---------C--C--C----------------Ccc--------CCCC--
Q 005349 326 ALCFDPSGILLVTASVQGHNINIFKIIPGIL---------G--T--S----------------SAC--------DAGT-- 366 (701)
Q Consensus 326 ~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~---------~--~--~----------------s~~--------~~~~-- 366 (701)
+|+|+|||++|+|++.||+ |+|||+.++.. . . . ... +...
T Consensus 301 ~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (435)
T 4e54_B 301 AACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT 379 (435)
T ss_dssp ECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC
T ss_pred ceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE
Confidence 9999999999999999998 99999876410 0 0 0 000 0000
Q ss_pred -------ceeEEEEEeccCCcccEEEE-EEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 367 -------SYVHLYRLQRGLTNAVIQDI-SFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 367 -------~~~~l~~l~rG~~~a~I~~i-aFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
....+..+..++ ...|.++ +|||||++||+|+ |++|+||++.+.
T Consensus 380 i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 380 IDVFDGNSGKMMCQLYDPE-SSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp EEEECSSSCCEEEEECCSS-CCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred EEEEECCCCcEEEEEeCCC-CCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 112233333333 2346676 6999999999886 789999999864
No 94
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.81 E-value=3.5e-17 Score=174.75 Aligned_cols=232 Identities=13% Similarity=0.126 Sum_probs=164.9
Q ss_pred cEEEEec-cCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCccc
Q 005349 19 RVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLAT 97 (701)
Q Consensus 19 ~vL~~g~-~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~ 97 (701)
.+++.+. ++.+++||++. +++...+..+ ..+.++++.|+. ..|++++..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~-~~~~~~~~~~-~~~~~~~~s~dg--------------~~l~~~~~~-------------- 52 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS-NKVTATIPVG-SNPMGAVISPDG--------------TKVYVANAH-------------- 52 (391)
T ss_dssp EEEEEETTTTEEEEEETTT-TEEEEEEECS-SSEEEEEECTTS--------------SEEEEEEGG--------------
T ss_pred EEEEEcCCCCEEEEEECCC-CeEEEEeecC-CCcceEEECCCC--------------CEEEEECCC--------------
Confidence 4555554 56699999986 5565555544 458888887643 234444321
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEEe--CCEEEEEECCCCceeEEEec
Q 005349 98 ACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ--AAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 98 ~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa~--~~~I~iwDl~t~~~~~tl~t 173 (701)
+++|++||+++++++.++.....|.+++|+ ++.|+++. +++|++||+.+++.+..+..
T Consensus 53 ------------------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~ 114 (391)
T 1l0q_A 53 ------------------SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT 114 (391)
T ss_dssp ------------------GTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ------------------CCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC
Confidence 178999999999999999998899999997 46665543 58999999999987766654
Q ss_pred CCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEE
Q 005349 174 NPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVN 253 (701)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~ 253 (701)
+.. + ..+++.. + |..
T Consensus 115 ~~~---------------~-----~~~~~s~-------------d--------------g~~------------------ 129 (391)
T 1l0q_A 115 GKS---------------P-----LGLALSP-------------D--------------GKK------------------ 129 (391)
T ss_dssp SSS---------------E-----EEEEECT-------------T--------------SSE------------------
T ss_pred CCC---------------c-----ceEEECC-------------C--------------CCE------------------
Confidence 311 1 1123321 0 000
Q ss_pred cCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCC
Q 005349 254 LGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG 333 (701)
Q Consensus 254 lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG 333 (701)
.++.+..++.|++||+.+++.+..+..|. .+.+++|+|+|
T Consensus 130 ---------------------------------------l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg 169 (391)
T 1l0q_A 130 ---------------------------------------LYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDG 169 (391)
T ss_dssp ---------------------------------------EEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTS
T ss_pred ---------------------------------------EEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCC
Confidence 01123457899999999999998888775 56999999999
Q ss_pred CEE-EEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEe---CCCcEEEEec
Q 005349 334 ILL-VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS---SRGTSHLFAI 409 (701)
Q Consensus 334 ~lL-aTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS---~dgTI~Iwdl 409 (701)
++| ++++.+|+ |++||+.++ ..+..+.. ...+.+++|+|||++|++++ .+++|++||+
T Consensus 170 ~~l~~~~~~~~~-v~~~d~~~~--------------~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 170 TKVYVANFDSMS-ISVIDTVTN--------------SVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp SEEEEEETTTTE-EEEEETTTT--------------EEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred CEEEEEeCCCCE-EEEEECCCC--------------eEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 987 56677776 999999876 44445432 23589999999999999988 6899999999
Q ss_pred CCCCCceeecCC
Q 005349 410 NPLGGSVNFQPT 421 (701)
Q Consensus 410 ~~~g~~~~~~~H 421 (701)
........+..|
T Consensus 232 ~~~~~~~~~~~~ 243 (391)
T 1l0q_A 232 GTNKITARIPVG 243 (391)
T ss_dssp TTTEEEEEEECC
T ss_pred CCCeEEEEEecC
Confidence 865443444444
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.81 E-value=1.1e-18 Score=183.57 Aligned_cols=208 Identities=12% Similarity=0.150 Sum_probs=143.1
Q ss_pred eEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcEEE
Q 005349 41 HDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVH 120 (701)
Q Consensus 41 ~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tVr 120 (701)
+.++..|.++|.++++.|++ .+||.++. +++|+
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g--------------~~lasgs~---------------------------------D~~v~ 38 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYG--------------TRLATCSS---------------------------------DRSVK 38 (316)
T ss_dssp --------CCEEEEEECGGG--------------CEEEEEET---------------------------------TTEEE
T ss_pred eeecccccCeEEEeeEcCCC--------------CEEEEEeC---------------------------------CCeEE
Confidence 34556799999999998743 24554442 27899
Q ss_pred EEECCCCc--EEEEEe-cCCCEEEEEec----CCEEEE-EeCCEEEEEECCCCc--eeEEEecCCCccCCCCCCCCCccc
Q 005349 121 FYSLRSQS--YVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGIGY 190 (701)
Q Consensus 121 iWdl~tg~--~v~tL~-f~s~V~sV~~s----~~~LaV-a~~~~I~iwDl~t~~--~~~tl~t~~~~~~~~~~~~~~~~~ 190 (701)
|||+++++ ++.+++ +...|.+|+|+ +++|++ +.|++|++||+.+++ ...++..|.. .+
T Consensus 39 lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~------------~V 106 (316)
T 3bg1_A 39 IFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS------------SV 106 (316)
T ss_dssp EEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSS------------CC
T ss_pred EEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCC------------ce
Confidence 99999885 456665 46799999995 466666 678999999999864 4444444421 01
Q ss_pred ceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccccc
Q 005349 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (701)
Q Consensus 191 ~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~ 270 (701)
+-++|..+. .+
T Consensus 107 -------~~v~~~p~~-------------------------~g------------------------------------- 117 (316)
T 3bg1_A 107 -------NSVCWAPHD-------------------------YG------------------------------------- 117 (316)
T ss_dssp -------CEEEECCTT-------------------------TC-------------------------------------
T ss_pred -------EEEEECCCC-------------------------CC-------------------------------------
Confidence 112332100 00
Q ss_pred CCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcE---EEEeecCCCCeEEEEEcCC---------------
Q 005349 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV---IAQFRAHKSPISALCFDPS--------------- 332 (701)
Q Consensus 271 p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~---i~~~~~H~~~Is~laFSPd--------------- 332 (701)
..++++..||.|+|||+..+.. ...+.+|...|.+++|+|+
T Consensus 118 ---------------------~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 176 (316)
T 3bg1_A 118 ---------------------LILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKP 176 (316)
T ss_dssp ---------------------SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCC
T ss_pred ---------------------cEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCc
Confidence 0233456789999999987632 3456799999999999998
Q ss_pred --CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCC----CEEEEEeCCCcEEE
Q 005349 333 --GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS----NWIMISSSRGTSHL 406 (701)
Q Consensus 333 --G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg----~~lAsgS~dgTI~I 406 (701)
+++||+|+.||+ |+|||+.... ....+..+ ++|. ..|.+++|+|++ ++||+++.|++|+|
T Consensus 177 ~~~~~l~sgs~D~~-v~lWd~~~~~-----------~~~~~~~l-~~h~-~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 177 NYIKRFASGGCDNL-IKLWKEEEDG-----------QWKEEQKL-EAHS-DWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp CCCCBEECCBTTSB-CCEEEECTTS-----------CEEEEECC-BCCS-SCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred cccceEEEecCCCe-EEEEEeCCCC-----------ccceeeec-ccCC-CceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 579999999998 9999996430 11234444 4554 459999999987 89999999999999
Q ss_pred EecCC
Q 005349 407 FAINP 411 (701)
Q Consensus 407 wdl~~ 411 (701)
|++..
T Consensus 243 w~~~~ 247 (316)
T 3bg1_A 243 WTCDD 247 (316)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99976
No 96
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.80 E-value=6.4e-18 Score=185.29 Aligned_cols=242 Identities=12% Similarity=0.134 Sum_probs=160.6
Q ss_pred CcEEEEeccC-CeEEEEecCC---------CCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcC
Q 005349 18 RRVLLLGYRS-GFQVWDVEEA---------DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSC 87 (701)
Q Consensus 18 ~~vL~~g~~~-g~qVwdv~~~---------~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~ 87 (701)
+.+|+.|..+ .++|||+... ......+..|.+.|.++.+.|.. ..+|+.++.
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-------------~~~l~s~~~----- 202 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL-------------NGYLLSASD----- 202 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS-------------TTEEEEECT-----
T ss_pred CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC-------------CCeEEEEeC-----
Confidence 4566666654 5999999862 23344455688888988887642 114443332
Q ss_pred CccccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcE-------EEEE-ecCCCEEEEEec---CCEEEE-EeCC
Q 005349 88 GTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSY-------VHML-KFRSPIYSVRCS---SRVVAI-CQAA 155 (701)
Q Consensus 88 ~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~-------v~tL-~f~s~V~sV~~s---~~~LaV-a~~~ 155 (701)
+++|++||+.++.. ...+ .+...|.+|+|+ +.++++ +.++
T Consensus 203 ----------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg 254 (430)
T 2xyi_A 203 ----------------------------DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 254 (430)
T ss_dssp ----------------------------TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred ----------------------------CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC
Confidence 26799999998432 2334 346789999996 356766 5689
Q ss_pred EEEEEECCCC---ceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCC
Q 005349 156 QVHCFDAATL---EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASN 232 (701)
Q Consensus 156 ~I~iwDl~t~---~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~ 232 (701)
+|++||+++. +....+..+.. . + +-|++.. .
T Consensus 255 ~i~i~d~~~~~~~~~~~~~~~~~~------------~---v----~~i~~~p-------------~-------------- 288 (430)
T 2xyi_A 255 KLMIWDTRNNNTSKPSHTVDAHTA------------E---V----NCLSFNP-------------Y-------------- 288 (430)
T ss_dssp EEEEEETTCSCSSSCSEEEECCSS------------C---E----EEEEECS-------------S--------------
T ss_pred eEEEEECCCCCCCcceeEeecCCC------------C---e----EEEEeCC-------------C--------------
Confidence 9999999987 34445443311 0 1 1223321 0
Q ss_pred CcceeehhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCC-C
Q 005349 233 GSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVS-K 311 (701)
Q Consensus 233 g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s-~ 311 (701)
+. ..++++..+|.|+|||+.+ +
T Consensus 289 ~~---------------------------------------------------------~~l~tg~~dg~v~vwd~~~~~ 311 (430)
T 2xyi_A 289 SE---------------------------------------------------------FILATGSADKTVALWDLRNLK 311 (430)
T ss_dssp CT---------------------------------------------------------TEEEEEETTSEEEEEETTCTT
T ss_pred CC---------------------------------------------------------CEEEEEeCCCeEEEEeCCCCC
Confidence 00 0123456789999999998 5
Q ss_pred cEEEEeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC
Q 005349 312 NVIAQFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 390 (701)
Q Consensus 312 ~~i~~~~~H~~~Is~laFSPdG-~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp 390 (701)
.++..+..|..+|.+|+|+|+| .+|++++.||+ |+|||+...................+..+ .++. ..|.+++|+|
T Consensus 312 ~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~-~~v~~~~~~p 388 (430)
T 2xyi_A 312 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHT-AKISDFSWNP 388 (430)
T ss_dssp SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGTTCCCCHHHHHHCCTTEEEEC-CCCS-SCEEEEEECS
T ss_pred CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCccccCccccccCCcceEEEc-CCCC-CCceEEEECC
Confidence 6789999999999999999999 47999999998 99999976310000000000001333443 4443 4599999999
Q ss_pred CCC-EEEEEeCCCcEEEEecCC
Q 005349 391 DSN-WIMISSSRGTSHLFAINP 411 (701)
Q Consensus 391 Dg~-~lAsgS~dgTI~Iwdl~~ 411 (701)
+++ +|++++.||+|+||++..
T Consensus 389 ~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 389 NEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCEEEEEECCCCEEEeEccc
Confidence 999 899999999999999964
No 97
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.80 E-value=6.8e-18 Score=177.77 Aligned_cols=230 Identities=13% Similarity=0.150 Sum_probs=157.6
Q ss_pred EEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcEEEE
Q 005349 42 DLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHF 121 (701)
Q Consensus 42 elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tVri 121 (701)
+++..|.++|.++++.|+. .+|++++. +++|++
T Consensus 2 ~~~~~~~~~i~~~~~s~~~--------------~~l~~~~~---------------------------------d~~v~i 34 (372)
T 1k8k_C 2 AYHSFLVEPISCHAWNKDR--------------TQIAICPN---------------------------------NHEVHI 34 (372)
T ss_dssp CEEESCSSCCCEEEECTTS--------------SEEEEECS---------------------------------SSEEEE
T ss_pred ceecccCCCeEEEEECCCC--------------CEEEEEeC---------------------------------CCEEEE
Confidence 4566688999999998742 35554432 178999
Q ss_pred EECCCCc--EEEEEe-cCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccceeee
Q 005349 122 YSLRSQS--YVHMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAV 195 (701)
Q Consensus 122 Wdl~tg~--~v~tL~-f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAl 195 (701)
||+.+++ ++.++. +...|.+++|+ +++|++ +.+++|++||+.+.+....+...... .++
T Consensus 35 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------~~v-- 99 (372)
T 1k8k_C 35 YEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN-------------RAA-- 99 (372)
T ss_dssp EEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS-------------SCE--
T ss_pred EeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCC-------------Cce--
Confidence 9999998 888886 47799999997 567776 56889999999888755444321100 001
Q ss_pred ccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCCCCC
Q 005349 196 GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQN 275 (701)
Q Consensus 196 s~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~ 275 (701)
..++|.. + +.
T Consensus 100 --~~~~~~~-------------~--------------~~----------------------------------------- 109 (372)
T 1k8k_C 100 --RCVRWAP-------------N--------------EK----------------------------------------- 109 (372)
T ss_dssp --EEEEECT-------------T--------------SS-----------------------------------------
T ss_pred --eEEEECC-------------C--------------CC-----------------------------------------
Confidence 1123321 0 00
Q ss_pred ccccccCCCCCCCcccccccccCCCCeEEEEECCCCc---EEEEe-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEc
Q 005349 276 SLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN---VIAQF-RAHKSPISALCFDPSGILLVTASVQGHNINIFKI 351 (701)
Q Consensus 276 s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~---~i~~~-~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl 351 (701)
.++.+..+|.|++||+..+. ....+ .+|...|.+++|+|+|++|++++.||+ |++||+
T Consensus 110 -----------------~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~~~d~ 171 (372)
T 1k8k_C 110 -----------------KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK-CRIFSA 171 (372)
T ss_dssp -----------------EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEEC
T ss_pred -----------------EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCC-EEEEEc
Confidence 12234567899999999876 23344 589999999999999999999999998 899997
Q ss_pred CCCCCCCCC-c---cCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCC
Q 005349 352 IPGILGTSS-A---CDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDA 423 (701)
Q Consensus 352 ~~~~~~~~s-~---~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~ 423 (701)
......... . .........+..+. ++ ...|.+++|+||+++|++++.|++|+|||+........+..|..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 245 (372)
T 1k8k_C 172 YIKEVEERPAPTPWGSKMPFGELMFESS-SS-CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 245 (372)
T ss_dssp CCTTTSCCCCCBTTBSCCCTTCEEEECC-CC-SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred ccccccccccccccccccchhhheEecC-CC-CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC
Confidence 532100000 0 00001124455553 33 34599999999999999999999999999988766667777643
No 98
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.80 E-value=2.4e-17 Score=203.01 Aligned_cols=274 Identities=14% Similarity=0.198 Sum_probs=183.8
Q ss_pred CcEEEE-eccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLL-GYRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~-g~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
.+.|+. +.++.++|||+.+ +.....+..|.+.|.++.+.|+. .+|+.++.
T Consensus 627 ~~~l~s~~~d~~i~vw~~~~-~~~~~~~~~h~~~v~~~~~s~~~--------------~~l~s~~~-------------- 677 (1249)
T 3sfz_A 627 GQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAFSSDD--------------SYIATCSA-------------- 677 (1249)
T ss_dssp SSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTS--------------SEEEEEET--------------
T ss_pred CCEEEEEeCCCeEEEEECCC-CCEEEEeccCCCCEEEEEEecCC--------------CEEEEEeC--------------
Confidence 444444 5566699999987 45555666799999999998743 25655542
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEecC----CEEEE-EeCCEEEEEECCCCceeEE
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCSS----RVVAI-CQAAQVHCFDAATLEIEYA 170 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s~----~~LaV-a~~~~I~iwDl~t~~~~~t 170 (701)
+++|++||+.+++++.++.. ...|.+++|++ .++++ +.++.|++||+.++++..+
T Consensus 678 -------------------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~ 738 (1249)
T 3sfz_A 678 -------------------DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT 738 (1249)
T ss_dssp -------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE
T ss_pred -------------------CCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe
Confidence 17799999999999999975 67999999964 35655 5688999999999999988
Q ss_pred EecCCCccCCCCCCCCCcccceeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchh
Q 005349 171 ILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (701)
Q Consensus 171 l~t~~~~~~~~~~~~~~~~~~piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la 248 (701)
+..|.. .+..++++| ++|+.++.+ ..|..|..+..+.+.
T Consensus 739 ~~~h~~------------~v~~~~~sp~~~~l~s~s~d---------------------------g~v~vwd~~~~~~~~ 779 (1249)
T 3sfz_A 739 MFGHTN------------SVNHCRFSPDDELLASCSAD---------------------------GTLRLWDVRSANERK 779 (1249)
T ss_dssp ECCCSS------------CEEEEEECSSTTEEEEEESS---------------------------SEEEEEEGGGTEEEE
T ss_pred ecCCCC------------CEEEEEEecCCCEEEEEECC---------------------------CeEEEEeCCCCcccc
Confidence 877643 123355554 556554321 122222211111100
Q ss_pred ceeEEcCCccceeccccccc-ccC-CCC-CccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEee-cCCCCe
Q 005349 249 AGIVNLGDLGYKKLSQYCSE-FLP-DSQ-NSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR-AHKSPI 324 (701)
Q Consensus 249 ~gl~~lGd~g~~~ls~y~~~-~~p-~~~-~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~-~H~~~I 324 (701)
.+. ...+... ..+ ... ..+... .+..+| ..++ ...++.|.+||+.++..+..+. +|...|
T Consensus 780 ----~~~------~~~~~~~~~~~~~~~~~~v~~~--~~s~dg---~~l~-~~~~~~v~~~d~~~~~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 780 ----SIN------VKRFFLSSEDPPEDVEVIVKCC--SWSADG---DKII-VAAKNKVLLFDIHTSGLLAEIHTGHHSTI 843 (1249)
T ss_dssp ----EEE------CCCCC--------CCCCCBCCC--CBCTTS---SEEE-EEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred ----eec------ccccccccCCccccccceEEEE--EECCCC---CEEE-EEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence 000 0000000 000 000 000000 000011 1122 2346899999999999888887 899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcE
Q 005349 325 SALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTS 404 (701)
Q Consensus 325 s~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI 404 (701)
.+++|+|+|.+|++++.||+ |++||+.++ ..+..+ +++. ..|.+++|+|||++|++++.||+|
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~-v~vwd~~~~--------------~~~~~~-~~h~-~~v~~v~~spdg~~l~s~s~dg~v 906 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYC-VELWNIDSR--------------LKVADC-RGHL-SWVHGVMFSPDGSSFLTASDDQTI 906 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSC-EEEEETTTT--------------EEEEEE-CCCS-SCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEEcCCCCEEEEEeCCCe-EEEEEcCCC--------------ceeeec-CCCc-cceEEEEECCCCCEEEEEeCCCeE
Confidence 99999999999999999998 999999876 566666 3543 469999999999999999999999
Q ss_pred EEEecCC
Q 005349 405 HLFAINP 411 (701)
Q Consensus 405 ~Iwdl~~ 411 (701)
++|++..
T Consensus 907 ~vw~~~~ 913 (1249)
T 3sfz_A 907 RVWETKK 913 (1249)
T ss_dssp EEEEHHH
T ss_pred EEEEccc
Confidence 9999863
No 99
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.80 E-value=1.2e-16 Score=170.52 Aligned_cols=234 Identities=12% Similarity=0.124 Sum_probs=167.4
Q ss_pred CcEEEEe-ccCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLG-YRSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g-~~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
+.+++.+ .++.+++||+.. ++....+.. .+.|..+++.|+. ..|++++..
T Consensus 44 ~~l~~~~~~d~~i~v~d~~~-~~~~~~~~~-~~~v~~~~~spdg--------------~~l~~~~~~------------- 94 (391)
T 1l0q_A 44 TKVYVANAHSNDVSIIDTAT-NNVIATVPA-GSSPQGVAVSPDG--------------KQVYVTNMA------------- 94 (391)
T ss_dssp SEEEEEEGGGTEEEEEETTT-TEEEEEEEC-SSSEEEEEECTTS--------------SEEEEEETT-------------
T ss_pred CEEEEECCCCCeEEEEECCC-CeEEEEEEC-CCCccceEECCCC--------------CEEEEEECC-------------
Confidence 3454555 677799999986 555555553 3488888887642 245555421
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEE-EE-eCCEEEEEECCCCceeEEEe
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVA-IC-QAAQVHCFDAATLEIEYAIL 172 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~La-Va-~~~~I~iwDl~t~~~~~tl~ 172 (701)
+++|++||+++++.+..+.....+.+++|+ ++.|+ ++ .+++|++||+.+++.+..+.
T Consensus 95 -------------------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 155 (391)
T 1l0q_A 95 -------------------SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS 155 (391)
T ss_dssp -------------------TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred -------------------CCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe
Confidence 167999999999999999988899999997 45554 43 47899999999998777665
Q ss_pred cCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeE
Q 005349 173 TNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIV 252 (701)
Q Consensus 173 t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~ 252 (701)
.+.. + .-+++.. + +..
T Consensus 156 ~~~~---------------~-----~~~~~~~-------------d--------------g~~----------------- 171 (391)
T 1l0q_A 156 VGRS---------------P-----KGIAVTP-------------D--------------GTK----------------- 171 (391)
T ss_dssp CCSS---------------E-----EEEEECT-------------T--------------SSE-----------------
T ss_pred cCCC---------------c-----ceEEECC-------------C--------------CCE-----------------
Confidence 4311 1 1123321 0 000
Q ss_pred EcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCC
Q 005349 253 NLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS 332 (701)
Q Consensus 253 ~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd 332 (701)
.++.+..+|.|++||+.+++.+..+.. ...+.+++|+|+
T Consensus 172 ----------------------------------------l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~ 210 (391)
T 1l0q_A 172 ----------------------------------------VYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPE 210 (391)
T ss_dssp ----------------------------------------EEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTT
T ss_pred ----------------------------------------EEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCC
Confidence 011234568999999999988877764 457899999999
Q ss_pred CCEEEEEe---CCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEE-EEEeCCCcEEEEe
Q 005349 333 GILLVTAS---VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWI-MISSSRGTSHLFA 408 (701)
Q Consensus 333 G~lLaTaS---~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~l-AsgS~dgTI~Iwd 408 (701)
|++|++++ .+++ |++||+.++ ..+..+..+ ..+.+++|+|||++| ++++.|++|++||
T Consensus 211 g~~l~~~~~~~~~~~-v~~~d~~~~--------------~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 211 GTKAYVTNVDKYFNT-VSMIDTGTN--------------KITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp SSEEEEEEECSSCCE-EEEEETTTT--------------EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEecCcCCCc-EEEEECCCC--------------eEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 99999988 5665 999999876 555566432 248899999999988 5678899999999
Q ss_pred cCCCCCceeecCCC
Q 005349 409 INPLGGSVNFQPTD 422 (701)
Q Consensus 409 l~~~g~~~~~~~H~ 422 (701)
+.+......+..|.
T Consensus 273 ~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 273 TATNTITATMAVGK 286 (391)
T ss_dssp TTTTEEEEEEECSS
T ss_pred CCCCcEEEEEECCc
Confidence 98765555566554
No 100
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.80 E-value=8.9e-18 Score=196.78 Aligned_cols=219 Identities=11% Similarity=0.194 Sum_probs=169.4
Q ss_pred eeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcEE
Q 005349 40 VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVV 119 (701)
Q Consensus 40 ~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tV 119 (701)
....+..|.+.|+++.+.|+. ++||+++. +++|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~--------------~~la~~~~---------------------------------~g~v 37 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTE--------------PWVLTTLY---------------------------------SGRV 37 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSS--------------SEEEEEET---------------------------------TSEE
T ss_pred cceeeecCCCceEEEEECCCC--------------CEEEEEeC---------------------------------CCEE
Confidence 456677899999999998742 46776653 1679
Q ss_pred EEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccceeee
Q 005349 120 HFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAV 195 (701)
Q Consensus 120 riWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAl 195 (701)
+|||+.+++.+.++.. ..+|.+++|+ +++|++ +.+++|++||+.+++.+.++..+... +
T Consensus 38 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~---------------v-- 100 (814)
T 3mkq_A 38 EIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY---------------I-- 100 (814)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC---------------E--
T ss_pred EEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC---------------E--
Confidence 9999999999999984 7799999997 466776 56889999999999988888765321 1
Q ss_pred ccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCCCCC
Q 005349 196 GPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQN 275 (701)
Q Consensus 196 s~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~ 275 (701)
+.+++.. + +.
T Consensus 101 --~~~~~s~-------------~--------------~~----------------------------------------- 110 (814)
T 3mkq_A 101 --RSIAVHP-------------T--------------KP----------------------------------------- 110 (814)
T ss_dssp --EEEEECS-------------S--------------SS-----------------------------------------
T ss_pred --EEEEEeC-------------C--------------CC-----------------------------------------
Confidence 1233321 0 00
Q ss_pred ccccccCCCCCCCcccccccccCCCCeEEEEECCCC-cEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCC
Q 005349 276 SLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK-NVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIP 353 (701)
Q Consensus 276 s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~-~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~ 353 (701)
.++++..||.|+|||+.++ .....+.+|..+|.+++|+| +|.+|++++.||+ |++||+..
T Consensus 111 -----------------~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-v~vwd~~~ 172 (814)
T 3mkq_A 111 -----------------YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT-VKVWSLGQ 172 (814)
T ss_dssp -----------------EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEETTC
T ss_pred -----------------EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe-EEEEECCC
Confidence 1223456899999999987 77788999999999999999 8999999999997 99999976
Q ss_pred CCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC--CCCEEEEEeCCCcEEEEecCCCCCceeecCCCCCc
Q 005349 354 GILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD--DSNWIMISSSRGTSHLFAINPLGGSVNFQPTDANF 425 (701)
Q Consensus 354 ~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp--Dg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~~ 425 (701)
+ .....+..+ ....|.+++|+| |+++|++++.||+|++||+........+..|...+
T Consensus 173 ~--------------~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v 231 (814)
T 3mkq_A 173 S--------------TPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231 (814)
T ss_dssp S--------------SCSEEEECC-CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred C--------------cceeEEecC-CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence 5 223344332 334589999999 99999999999999999998766666777776544
No 101
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.79 E-value=4.3e-18 Score=178.20 Aligned_cols=191 Identities=10% Similarity=0.169 Sum_probs=135.0
Q ss_pred cEEEEEECCCCcEEEEEe------cCCCEEEEEecCC------EEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCC
Q 005349 117 TVVHFYSLRSQSYVHMLK------FRSPIYSVRCSSR------VVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSA 183 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~------f~s~V~sV~~s~~------~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~ 183 (701)
+.|++||+.+++.+..++ +...|.+++|++. +|++ +.+++|++||+.+++.+.++..+..
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~------- 116 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN------- 116 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS-------
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC-------
Confidence 569999999999888876 3367999999743 5665 6788999999999998888776532
Q ss_pred CCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecc
Q 005349 184 GGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLS 263 (701)
Q Consensus 184 ~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls 263 (701)
++ ..++|.. . ++.
T Consensus 117 --------~i----~~~~~~~-------------~-------------~~~----------------------------- 129 (366)
T 3k26_A 117 --------AI----NELKFHP-------------R-------------DPN----------------------------- 129 (366)
T ss_dssp --------CE----EEEEECS-------------S-------------CTT-----------------------------
T ss_pred --------cE----EEEEECC-------------C-------------CCC-----------------------------
Confidence 11 1233321 0 000
Q ss_pred cccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEe---ecCCCCeEEEEEcCCCCEEEEEe
Q 005349 264 QYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF---RAHKSPISALCFDPSGILLVTAS 340 (701)
Q Consensus 264 ~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~---~~H~~~Is~laFSPdG~lLaTaS 340 (701)
.++++..||.|+|||+.+++.+..+ .+|...|.+++|+|+|.+|++++
T Consensus 130 -----------------------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 180 (366)
T 3k26_A 130 -----------------------------LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG 180 (366)
T ss_dssp -----------------------------EEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEE
T ss_pred -----------------------------EEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEec
Confidence 1233456899999999999999998 78999999999999999999999
Q ss_pred CCCcEEEEEEcCCCCC-------------CCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005349 341 VQGHNINIFKIIPGIL-------------GTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLF 407 (701)
Q Consensus 341 ~dGt~I~Iwdl~~~~~-------------~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iw 407 (701)
.||+ |++||+..+.. +..............+....++ ...|.+++|+ +++|++++.|++|++|
T Consensus 181 ~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~~~~~d~~i~~w 256 (366)
T 3k26_A 181 MDHS-LKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH-RNYVDCVRWL--GDLILSKSCENAIVCW 256 (366)
T ss_dssp TTSC-EEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC-SSCCCEEEEE--TTEEEEECSSSEEEEE
T ss_pred CCCC-EEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC-cceEEEEEEc--CCEEEEEecCCEEEEE
Confidence 9998 89999986410 0000000000000011111223 3459999999 7899999999999999
Q ss_pred ecCCCCC
Q 005349 408 AINPLGG 414 (701)
Q Consensus 408 dl~~~g~ 414 (701)
|+.....
T Consensus 257 d~~~~~~ 263 (366)
T 3k26_A 257 KPGKMED 263 (366)
T ss_dssp EESSTTC
T ss_pred eCCCccc
Confidence 9987644
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.79 E-value=8.1e-18 Score=175.36 Aligned_cols=222 Identities=15% Similarity=0.182 Sum_probs=161.1
Q ss_pred cEEEEeccCCeEEEEe-cCCCCeeEEeee--ccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 005349 19 RVLLLGYRSGFQVWDV-EEADNVHDLVSR--YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (701)
Q Consensus 19 ~vL~~g~~~g~qVwdv-~~~~~~~elvs~--~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~ 95 (701)
.+++.+.++.+++||+ +. +.. ..+.. |.+.|.++.+.| . .+|+.++.
T Consensus 71 ~l~~~~~dg~i~~wd~~~~-~~~-~~~~~~~~~~~v~~l~~~~-~--------------~~l~s~~~------------- 120 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGS-PSF-QALTNNEANLGICRICKYG-D--------------DKLIAASW------------- 120 (342)
T ss_dssp EEEEEETTSCEEEECSSSS-SSE-EECBSCCCCSCEEEEEEET-T--------------TEEEEEET-------------
T ss_pred EEEEEcCCCeEEEEEeccC-Cce-EeccccCCCCceEEEEeCC-C--------------CEEEEEcC-------------
Confidence 4555566777999999 75 334 55566 899999999976 2 24554432
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEECCC---------CcEEEEEecCCCEEEEEecCCEEEE-EeCCEEEEEECCC-
Q 005349 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRS---------QSYVHMLKFRSPIYSVRCSSRVVAI-CQAAQVHCFDAAT- 164 (701)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~~~~~tVriWdl~t---------g~~v~tL~f~s~V~sV~~s~~~LaV-a~~~~I~iwDl~t- 164 (701)
+++|++||+++ ++++.++.+...|.++++++..+++ +.+++|++||+.+
T Consensus 121 --------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~ 180 (342)
T 1yfq_A 121 --------------------DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180 (342)
T ss_dssp --------------------TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCC
T ss_pred --------------------CCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcc
Confidence 27899999998 8888888888999999998766666 6688999999998
Q ss_pred CceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhch
Q 005349 165 LEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESS 244 (701)
Q Consensus 165 ~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~s 244 (701)
+............ . ++ +.+++... + +
T Consensus 181 ~~~~~~~~~~~~~------------~-~i----~~i~~~~~------------~--------------~----------- 206 (342)
T 1yfq_A 181 EDDNGTIEESGLK------------Y-QI----RDVALLPK------------E--------------Q----------- 206 (342)
T ss_dssp TTCCCEEEECSCS------------S-CE----EEEEECSG------------G--------------G-----------
T ss_pred ccccceeeecCCC------------C-ce----eEEEECCC------------C--------------C-----------
Confidence 6542222111100 0 01 11222200 0 0
Q ss_pred hchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC------cEEEEee
Q 005349 245 KHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK------NVIAQFR 318 (701)
Q Consensus 245 k~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~------~~i~~~~ 318 (701)
..++.+..+|.|+|||+... +.+..++
T Consensus 207 -----------------------------------------------~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 207 -----------------------------------------------EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp -----------------------------------------------CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred -----------------------------------------------CEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 01223456899999999887 7888999
Q ss_pred cCCC---------CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEc
Q 005349 319 AHKS---------PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFS 389 (701)
Q Consensus 319 ~H~~---------~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFS 389 (701)
.|.. +|.+++|+|+|++|++++.||+ |+|||+.++ ..+..+ .+++...|.+++
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~~~--------------~~~~~~-~~~h~~~v~~~~-- 301 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTR--------------KKIKNF-AKFNEDSVVKIA-- 301 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTTT--------------EEEEEC-CCCSSSEEEEEE--
T ss_pred cccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCccH--------------hHhhhh-hcccCCCceEec--
Confidence 9866 9999999999999999999998 899999887 566666 344245699999
Q ss_pred CCCCEEEEEeCCCc-EEEEec
Q 005349 390 DDSNWIMISSSRGT-SHLFAI 409 (701)
Q Consensus 390 pDg~~lAsgS~dgT-I~Iwdl 409 (701)
||+++|++++.||+ .+.|..
T Consensus 302 ~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 302 CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ECSSEEEEEEECTHHHHCSSS
T ss_pred CCCCeEEEEecCCcccccccc
Confidence 99999999999999 665554
No 103
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.6e-17 Score=168.70 Aligned_cols=249 Identities=11% Similarity=0.101 Sum_probs=165.5
Q ss_pred CeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcE
Q 005349 39 NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTV 118 (701)
Q Consensus 39 ~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~t 118 (701)
.....+..|.++|.++.+ |+. .+|+.++. +++
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~--------------~~l~s~~~---------------------------------dg~ 40 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDD--------------SKVASVSR---------------------------------DGT 40 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EET--------------TEEEEEET---------------------------------TSE
T ss_pred HHHHHhhCCCCCcEEEEe-cCC--------------CEEEEEEc---------------------------------CCc
Confidence 455566779999999998 632 24554442 278
Q ss_pred EEEEECCCCcEEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCC---ceeEEEecCCCccCCCCCCCCCcccc
Q 005349 119 VHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATL---EIEYAILTNPIVMGHPSAGGIGIGYG 191 (701)
Q Consensus 119 VriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~---~~~~tl~t~~~~~~~~~~~~~~~~~~ 191 (701)
|++||+.+++.+..+.. ...|.+++|+ +++|++ +.++.|++||+.+. +....+..+.. ...
T Consensus 41 v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~------------~i~ 108 (313)
T 3odt_A 41 VRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG------------NVC 108 (313)
T ss_dssp EEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS------------CEE
T ss_pred EEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhccc------------CEE
Confidence 99999999998888765 7899999996 466666 67889999998765 34445544421 122
Q ss_pred eeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEc-CCccceeccccccccc
Q 005349 192 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNL-GDLGYKKLSQYCSEFL 270 (701)
Q Consensus 192 piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~l-Gd~g~~~ls~y~~~~~ 270 (701)
.+++.++.|+.++.+ ..+..|. ..+. +..+ +... .+
T Consensus 109 ~~~~~~~~l~~~~~d---------------------------~~i~~~d--~~~~----~~~~~~~~~--~v-------- 145 (313)
T 3odt_A 109 SLSFQDGVVISGSWD---------------------------KTAKVWK--EGSL----VYNLQAHNA--SV-------- 145 (313)
T ss_dssp EEEEETTEEEEEETT---------------------------SEEEEEE--TTEE----EEEEECCSS--CE--------
T ss_pred EEEecCCEEEEEeCC---------------------------CCEEEEc--CCcE----EEecccCCC--ce--------
Confidence 344455555554321 1121111 0000 0000 0000 00
Q ss_pred CCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005349 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA-HKSPISALCFDPSGILLVTASVQGHNINIF 349 (701)
Q Consensus 271 p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~-H~~~Is~laFSPdG~lLaTaS~dGt~I~Iw 349 (701)
..+. ..+. ....++.+..+|.|++|| ..+.+..+.. |...|.+++|+|+|. |++++.||+ |++|
T Consensus 146 ----~~~~-~~~~------~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i~ 210 (313)
T 3odt_A 146 ----WDAK-VVSF------SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKLV 210 (313)
T ss_dssp ----EEEE-EEET------TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEEE
T ss_pred ----eEEE-EccC------CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEEE
Confidence 0000 0010 012455677899999999 5567788887 999999999999999 999999997 9999
Q ss_pred EcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCC
Q 005349 350 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 422 (701)
Q Consensus 350 dl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~ 422 (701)
|+.++ ..+..+. ++ ...|.+++|+||+ .|++++.||+|+|||+........+..|.
T Consensus 211 d~~~~--------------~~~~~~~-~~-~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 266 (313)
T 3odt_A 211 DMHTG--------------DVLRTYE-GH-ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA 266 (313)
T ss_dssp ETTTC--------------CEEEEEE-CC-SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred ECCch--------------hhhhhhh-cC-CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC
Confidence 99876 5666663 43 3469999999999 58899999999999998876555666664
No 104
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.6e-18 Score=200.68 Aligned_cols=248 Identities=13% Similarity=0.162 Sum_probs=166.2
Q ss_pred CcEEEEeccCCeEEEEecCC-CCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGYRSGFQVWDVEEA-DNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~-~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
+.+++.+.++.++|||+... ......+..|.++|.++.+.|.. ...+|+.++.
T Consensus 22 ~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~------------~~~~l~s~s~-------------- 75 (753)
T 3jro_A 22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK------------FGTILASCSY-------------- 75 (753)
T ss_dssp CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT------------SCSEEEEEET--------------
T ss_pred CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC------------CCCEEEEEeC--------------
Confidence 44555556677999999842 23444556789999999998641 0135554442
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCc--EEEEEe-cCCCEEEEEec----CCEEEE-EeCCEEEEEECCCCce-
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQS--YVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLEI- 167 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~--~v~tL~-f~s~V~sV~~s----~~~LaV-a~~~~I~iwDl~t~~~- 167 (701)
+++|++||+++++ .+..+. +...|.+++|+ ++++++ +.+++|++||+.+...
T Consensus 76 -------------------Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~ 136 (753)
T 3jro_A 76 -------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 136 (753)
T ss_dssp -------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred -------------------CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence 1679999999997 555555 46799999996 446666 6789999999998742
Q ss_pred -eEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhc
Q 005349 168 -EYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKH 246 (701)
Q Consensus 168 -~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~ 246 (701)
...+..++. ++ ..+++.... .... +..
T Consensus 137 ~~~~~~~~~~---------------~v----~~l~~~p~~-------------~~~~---------~~~----------- 164 (753)
T 3jro_A 137 SPIIIDAHAI---------------GV----NSASWAPAT-------------IEED---------GEH----------- 164 (753)
T ss_dssp CCEEEECCSS---------------CE----EEEEECCCC----------------------------------------
T ss_pred ceeEeecCCC---------------ce----EEEEecCcc-------------cccc---------ccc-----------
Confidence 333333321 01 123333100 0000 000
Q ss_pred hhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC----cEEEEeecCCC
Q 005349 247 LAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK----NVIAQFRAHKS 322 (701)
Q Consensus 247 la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~----~~i~~~~~H~~ 322 (701)
...+ ....++++..||.|++||+.++ .++..+.+|..
T Consensus 165 --------------------------------~~~~-------d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~ 205 (753)
T 3jro_A 165 --------------------------------NGTK-------ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 205 (753)
T ss_dssp ----------------------------------CG-------GGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred --------------------------------ccCC-------CCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC
Confidence 0000 0113455677899999999887 56778899999
Q ss_pred CeEEEEEcCC---CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEe
Q 005349 323 PISALCFDPS---GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS 399 (701)
Q Consensus 323 ~Is~laFSPd---G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS 399 (701)
+|.+++|+|+ |++|++++.||+ |+|||+..+.... ...+... .+ +...|.+++|+|||++|++++
T Consensus 206 ~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iwd~~~~~~~~---------~~~~~~~-~~-~~~~v~~l~~spdg~~l~s~s 273 (753)
T 3jro_A 206 WVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQGPW---------KKTLLKE-EK-FPDVLWRASWSLSGNVLALSG 273 (753)
T ss_dssp CEEEEEECCCCSSSEEEEEEESSSC-EEEEEESSSSSCC---------BCCBSSS-SC-CSSCCCCEEECTTTCCEEEEC
T ss_pred cEEEEEeccCCCCCCEEEEEecCCE-EEEecCCCCCCcc---------eeEEecc-CC-CCCceEEEEEcCCCCEEEEEc
Confidence 9999999999 999999999998 8999998751000 0011111 11 234599999999999999999
Q ss_pred CCCcEEEEecCCCC
Q 005349 400 SRGTSHLFAINPLG 413 (701)
Q Consensus 400 ~dgTI~Iwdl~~~g 413 (701)
.||+|+||++...+
T Consensus 274 ~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 274 GDNKVTLWKENLEG 287 (753)
T ss_dssp SSSCEECCBCCSSS
T ss_pred CCCEEEEEecCCCC
Confidence 99999999998654
No 105
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.79 E-value=1.1e-17 Score=180.61 Aligned_cols=231 Identities=12% Similarity=0.161 Sum_probs=160.0
Q ss_pred CcEEEEec-cCCeEEEEecCCC------CeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCcc
Q 005349 18 RRVLLLGY-RSGFQVWDVEEAD------NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTK 90 (701)
Q Consensus 18 ~~vL~~g~-~~g~qVwdv~~~~------~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~ 90 (701)
..+|+.|. ++.++|||+...+ .....+..|.+.|.++++.|+. ..+|+.++.
T Consensus 94 ~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-------------~~~l~s~~~-------- 152 (402)
T 2aq5_A 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA-------------QNVLLSAGC-------- 152 (402)
T ss_dssp TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB-------------TTEEEEEET--------
T ss_pred CCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC-------------CCEEEEEcC--------
Confidence 45566555 5559999998743 3455666799999999998742 125554442
Q ss_pred ccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEe---cCCCEEEEEec--CCEEEE-EeCCEEEEEECCC
Q 005349 91 VQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLK---FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAAT 164 (701)
Q Consensus 91 ~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~---f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t 164 (701)
+++|++||+++++++.++. +...|.+++|+ +++|++ +.+++|++||+++
T Consensus 153 -------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 207 (402)
T 2aq5_A 153 -------------------------DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207 (402)
T ss_dssp -------------------------TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT
T ss_pred -------------------------CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC
Confidence 1669999999999999993 57799999996 456665 6789999999999
Q ss_pred CceeEEE-ecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhc
Q 005349 165 LEIEYAI-LTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKES 243 (701)
Q Consensus 165 ~~~~~tl-~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~ 243 (701)
++.+.++ ..+... .. ..+++.. + +..
T Consensus 208 ~~~~~~~~~~~~~~-----------~~-------~~~~~~~-------------~--------------~~~-------- 234 (402)
T 2aq5_A 208 GTVVAEKDRPHEGT-----------RP-------VHAVFVS-------------E--------------GKI-------- 234 (402)
T ss_dssp TEEEEEEECSSCSS-----------SC-------CEEEECS-------------T--------------TEE--------
T ss_pred CceeeeeccCCCCC-----------cc-------eEEEEcC-------------C--------------CcE--------
Confidence 9888777 343210 00 1122221 0 000
Q ss_pred hhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCccccccccc---CCCCeEEEEECCCCcE-EEEee-
Q 005349 244 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDA---DNVGMVIVRDIVSKNV-IAQFR- 318 (701)
Q Consensus 244 sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~---~~dG~V~IwDl~s~~~-i~~~~- 318 (701)
++.+ ..+|.|+|||+.+++. +..+.
T Consensus 235 --------------------------------------------------l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~ 264 (402)
T 2aq5_A 235 --------------------------------------------------LTTGFSRMSERQVALWDTKHLEEPLSLQEL 264 (402)
T ss_dssp --------------------------------------------------EEEEECTTCCEEEEEEETTBCSSCSEEEEC
T ss_pred --------------------------------------------------EEEeccCCCCceEEEEcCccccCCceEEec
Confidence 0111 4678999999998654 33333
Q ss_pred cCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEE
Q 005349 319 AHKSPISALCFDPSGILLVT-ASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMI 397 (701)
Q Consensus 319 ~H~~~Is~laFSPdG~lLaT-aS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAs 397 (701)
.|...|.+++|+|+|.+|++ ++.||+ |+|||+.++. .....+..+. +...|.+++|+||+.++++
T Consensus 265 ~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~~~~----------~~~~~l~~~~---~~~~v~~~~~sp~~~~~~s 330 (402)
T 2aq5_A 265 DTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEITSEA----------PFLHYLSMFS---SKESQRGMGYMPKRGLEVN 330 (402)
T ss_dssp CCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEECSST----------TCEEEEEEEC---CSSCCSEEEECCGGGSCGG
T ss_pred cCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEecCCC----------cceEeecccc---cCCcccceEEeccccccee
Confidence 67788999999999999975 557887 9999998761 0012222221 2345999999999999875
Q ss_pred EeCCCcEEEEecCCCC
Q 005349 398 SSSRGTSHLFAINPLG 413 (701)
Q Consensus 398 gS~dgTI~Iwdl~~~g 413 (701)
.++++++|++.+..
T Consensus 331 --~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 331 --KCEIARFYKLHERK 344 (402)
T ss_dssp --GTEEEEEEEEETTE
T ss_pred --cceeEEEEEcCCCc
Confidence 57799999998743
No 106
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.78 E-value=2.8e-17 Score=177.01 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=84.3
Q ss_pred CCeEEEEECCCCcEEEE--eecCCCCeEEEEEcCCCCEEEEEeCCCc---EEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 300 VGMVIVRDIVSKNVIAQ--FRAHKSPISALCFDPSGILLVTASVQGH---NINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~--~~~H~~~Is~laFSPdG~lLaTaS~dGt---~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
++.+++|+..+++.+.. +..|...|.+++|+|||++|++++.|+. .+++|++.... ........+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~----------~~~~~~~~~ 265 (365)
T 4h5i_A 196 GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN----------TSVLRSKQV 265 (365)
T ss_dssp SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE----------EEEEEEEEE
T ss_pred ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce----------ecceeeeee
Confidence 34577777777765543 4578899999999999999999998874 48889987650 011122333
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee-cCCCCCc
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF-QPTDANF 425 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~-~~H~~~~ 425 (701)
. ++. ..|.+++|||||++||+|+.|++|+|||+.+......+ ++|...+
T Consensus 266 ~-~~~-~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V 315 (365)
T 4h5i_A 266 T-NRF-KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAI 315 (365)
T ss_dssp E-SSC-SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCE
T ss_pred c-CCC-CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCE
Confidence 2 332 35999999999999999999999999999886555554 6785443
No 107
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.78 E-value=6.8e-17 Score=176.13 Aligned_cols=229 Identities=16% Similarity=0.236 Sum_probs=155.8
Q ss_pred CcEEEEEECCCCcEEEEEec---CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcc
Q 005349 116 PTVVHFYSLRSQSYVHMLKF---RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 189 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~tL~f---~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~ 189 (701)
+++|+|||+.+|++++.+++ ...|.+|+|+ +++||+ +.|++|++||+.++++++++..|.. .
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~------------~ 191 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA------------R 191 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS------------C
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCC------------c
Confidence 38899999999999998876 3479999997 577877 5689999999999999988877642 1
Q ss_pred cceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccc
Q 005349 190 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 269 (701)
Q Consensus 190 ~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~ 269 (701)
...++..++.|+.++.+. .+..+........... ..++... + .....
T Consensus 192 v~~~s~~~~~l~sgs~d~---------------------------~i~~~d~~~~~~~~~~--~~~h~~~--~--~~~~~ 238 (420)
T 4gga_A 192 VGSLSWNSYILSSGSRSG---------------------------HIHHHDVRVAEHHVAT--LSGHSQE--V--CGLRW 238 (420)
T ss_dssp EEEEEEETTEEEEEETTS---------------------------EEEEEETTSSSCEEEE--EECCSSC--E--EEEEE
T ss_pred eEEEeeCCCEEEEEeCCC---------------------------ceeEeeecccceeeEE--ecccccc--e--eeeee
Confidence 234555566666553221 1111110000000000 0000000 0 00000
Q ss_pred cCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc----EEEEeecCCCCeEEEEEcCC-CCEEEEE--eCC
Q 005349 270 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPS-GILLVTA--SVQ 342 (701)
Q Consensus 270 ~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~----~i~~~~~H~~~Is~laFSPd-G~lLaTa--S~d 342 (701)
.|+ ...++++..||.|+|||+.+++ .+..+..|...|.+++|+|+ +.+|+++ +.|
T Consensus 239 ~~~------------------g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D 300 (420)
T 4gga_A 239 APD------------------GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 300 (420)
T ss_dssp CTT------------------SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred cCC------------------CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence 011 1235567789999999998764 45677899999999999996 4566664 578
Q ss_pred CcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEe--CCCcEEEEecCCCCCceeecC
Q 005349 343 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS--SRGTSHLFAINPLGGSVNFQP 420 (701)
Q Consensus 343 Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS--~dgTI~Iwdl~~~g~~~~~~~ 420 (701)
|+ |+|||+.++ .++..+.. ...|.+++|+++++.|++++ .|++|+|||+.+......+.+
T Consensus 301 ~~-I~iwd~~t~--------------~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g 362 (420)
T 4gga_A 301 RH-IRIWNVCSG--------------ACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 362 (420)
T ss_dssp CE-EEEEETTTT--------------EEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC
T ss_pred CE-EEEEeCCcc--------------ccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC
Confidence 86 999999987 56666642 23589999999999998876 799999999988777778888
Q ss_pred CCCCc
Q 005349 421 TDANF 425 (701)
Q Consensus 421 H~~~~ 425 (701)
|.+.+
T Consensus 363 H~~~V 367 (420)
T 4gga_A 363 HTSRV 367 (420)
T ss_dssp CSSCE
T ss_pred CCCCE
Confidence 86543
No 108
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.78 E-value=8.9e-18 Score=182.36 Aligned_cols=258 Identities=12% Similarity=0.066 Sum_probs=136.9
Q ss_pred cEEE-EeccCCeEEEEecCCCCee-E---EeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccC
Q 005349 19 RVLL-LGYRSGFQVWDVEEADNVH-D---LVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQD 93 (701)
Q Consensus 19 ~vL~-~g~~~g~qVwdv~~~~~~~-e---lvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d 93 (701)
++|+ .+.++.++|||++...... . .+..|.+.|..+.+.|..... ......+||-+++
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~------~~~d~~~las~s~----------- 164 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSAD------NRLAEQVIASVGD----------- 164 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTT------CSEEEEEEEEEET-----------
T ss_pred CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccc------cCCCCCEEEEEEC-----------
Confidence 3444 4556779999998732221 1 234799999999998732100 0001124554442
Q ss_pred CcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEE-EEecCCCEEEEEecC---CEEEE-EeCCEEEEEECCCCcee
Q 005349 94 GLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVH-MLKFRSPIYSVRCSS---RVVAI-CQAAQVHCFDAATLEIE 168 (701)
Q Consensus 94 ~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~-tL~f~s~V~sV~~s~---~~LaV-a~~~~I~iwDl~t~~~~ 168 (701)
+++|||||++++.++. .+.+.++|.+|+|++ ++|++ +.|++|++||+.+.+..
T Consensus 165 ----------------------D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~ 222 (393)
T 4gq1_A 165 ----------------------DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSA 222 (393)
T ss_dssp ----------------------TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--
T ss_pred ----------------------CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccc
Confidence 2899999998887655 456789999999974 45666 57899999999998766
Q ss_pred EEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchh
Q 005349 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA 248 (701)
Q Consensus 169 ~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la 248 (701)
..+..++.... ... +.....+...
T Consensus 223 ~~~~~~~~~~~------------~~~-----~s~~~~~~~~--------------------------------------- 246 (393)
T 4gq1_A 223 EENSQTELVKN------------PWL-----LTLNTLPLVN--------------------------------------- 246 (393)
T ss_dssp --------CSC------------CCS-----EEEESGGGC----------------------------------------
T ss_pred ccccccCCccc------------ceE-----Eeccccccee---------------------------------------
Confidence 55543321100 000 0111000000
Q ss_pred ceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEE
Q 005349 249 AGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALC 328 (701)
Q Consensus 249 ~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~la 328 (701)
.....+... .+ ..+....+. ...++++..|+.++|||+.+++....+..|...+..+.
T Consensus 247 -~~~~~~~~~--~v------------~~v~~~~~d-------g~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 247 -TCHSSGIAS--SL------------ANVRWIGSD-------GSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp ------CCSS--SC------------SEEEEETTT-------TCEEEEECTTSEEEEEEC-------------------C
T ss_pred -eeecccccc--cc------------eeeeeecCC-------CCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE
Confidence 000000000 00 000000000 11345567899999999999887777777776666655
Q ss_pred EcC--------------------CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEE
Q 005349 329 FDP--------------------SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISF 388 (701)
Q Consensus 329 FSP--------------------dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaF 388 (701)
|.| ++.++++++.||+ |+|||+.++ ..+..+. ++. ..|.+++|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~-V~lwd~~~~--------------~~~~~~~-~~~-~~V~svaf 367 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL-IQLINTYEK--------------DSNSIPI-QLG-MPIVDFCW 367 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE-EEEEETTCT--------------TCCEEEE-ECS-SCEEEEEE
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCE-EEEEECCCC--------------cEEEEec-CCC-CcEEEEEE
Confidence 554 3457788899987 999999876 2223332 222 35999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCC
Q 005349 389 SDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 389 SpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
||||++||+++.+| +.+|.+.-
T Consensus 368 spdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 368 HQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp CTTSSEEEEEESSE-EEEEEEGG
T ss_pred cCCCCEEEEEeCCC-eEEEEEeC
Confidence 99999999998765 66776643
No 109
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.77 E-value=3.4e-17 Score=177.23 Aligned_cols=227 Identities=15% Similarity=0.184 Sum_probs=155.6
Q ss_pred CCcEEEEEECCCCcEEEEEec--CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcc
Q 005349 115 VPTVVHFYSLRSQSYVHMLKF--RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIG 189 (701)
Q Consensus 115 ~~~tVriWdl~tg~~v~tL~f--~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~ 189 (701)
.+++|++||+.+++.+..+.. ...|.+|+|+ +++|++ +.++.|++||+.+++.+.++..+.. .
T Consensus 111 ~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------~ 178 (401)
T 4aez_A 111 LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA------------R 178 (401)
T ss_dssp ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS------------C
T ss_pred CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC------------c
Confidence 348899999999999998886 6789999996 467777 5688999999999998888876532 1
Q ss_pred cceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccc
Q 005349 190 YGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 269 (701)
Q Consensus 190 ~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~ 269 (701)
+..+++.++.|+.++.+ ..|..|..+..+....-+ .++.+ .+ .+..+
T Consensus 179 v~~~~~~~~~l~~~~~d---------------------------g~i~i~d~~~~~~~~~~~--~~~~~--~v--~~~~~ 225 (401)
T 4aez_A 179 VGCLSWNRHVLSSGSRS---------------------------GAIHHHDVRIANHQIGTL--QGHSS--EV--CGLAW 225 (401)
T ss_dssp EEEEEEETTEEEEEETT---------------------------SEEEEEETTSSSCEEEEE--ECCSS--CE--EEEEE
T ss_pred eEEEEECCCEEEEEcCC---------------------------CCEEEEecccCcceeeEE--cCCCC--Ce--eEEEE
Confidence 23455566666655322 112211111111000000 00000 00 00000
Q ss_pred cCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCC-CEEEEEe--CCCcEE
Q 005349 270 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSG-ILLVTAS--VQGHNI 346 (701)
Q Consensus 270 ~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG-~lLaTaS--~dGt~I 346 (701)
.|+ ...++++..||.|+|||+.+++++..+..|..+|.+++|+|+| .+|++++ .||+ |
T Consensus 226 ~~~------------------~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i 286 (401)
T 4aez_A 226 RSD------------------GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-I 286 (401)
T ss_dssp CTT------------------SSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-E
T ss_pred cCC------------------CCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE-E
Confidence 111 1245667789999999999999999999999999999999976 5777765 6887 9
Q ss_pred EEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEe--CCCcEEEEecCCCCCcee--ecCCC
Q 005349 347 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS--SRGTSHLFAINPLGGSVN--FQPTD 422 (701)
Q Consensus 347 ~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS--~dgTI~Iwdl~~~g~~~~--~~~H~ 422 (701)
++||+.++ ..+..+.. ...|.+++|+||+++|++++ .||+|+||++........ +..|.
T Consensus 287 ~i~d~~~~--------------~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~ 349 (401)
T 4aez_A 287 HFWNAATG--------------ARVNTVDA---GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHD 349 (401)
T ss_dssp EEEETTTC--------------CEEEEEEC---SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEECCCC--------------CEEEEEeC---CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCC
Confidence 99999876 55566642 24599999999999999954 899999999987433332 44554
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.77 E-value=3.6e-16 Score=169.14 Aligned_cols=224 Identities=10% Similarity=0.072 Sum_probs=162.3
Q ss_pred CcEEEEec-cCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~-~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
.++++.+. ++.+++||++. +.....+..+...+.++.+.|+. ..+++++..
T Consensus 181 ~~~~~s~~~d~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~------------- 232 (433)
T 3bws_A 181 NELWVSQMQANAVHVFDLKT-LAYKATVDLTGKWSKILLYDPIR--------------DLVYCSNWI------------- 232 (433)
T ss_dssp TEEEEEEGGGTEEEEEETTT-CCEEEEEECSSSSEEEEEEETTT--------------TEEEEEETT-------------
T ss_pred CEEEEEECCCCEEEEEECCC-ceEEEEEcCCCCCeeEEEEcCCC--------------CEEEEEecC-------------
Confidence 45666665 46699999986 45555666678889999887642 234444321
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEEe---------CCEEEEEECCCC
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ---------AAQVHCFDAATL 165 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa~---------~~~I~iwDl~t~ 165 (701)
+++|++||+++++.+.++.....+.+++++ ++.|+++. +++|++||+.++
T Consensus 233 -------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~ 293 (433)
T 3bws_A 233 -------------------SEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE 293 (433)
T ss_dssp -------------------TTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred -------------------CCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence 167999999999999998888889999996 45666643 679999999998
Q ss_pred ceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchh
Q 005349 166 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (701)
Q Consensus 166 ~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk 245 (701)
+....+... . .++.+++.. + +..
T Consensus 294 ~~~~~~~~~-~-------------------~~~~~~~~~-------------~--------------g~~---------- 316 (433)
T 3bws_A 294 KLIDTIGPP-G-------------------NKRHIVSGN-------------T--------------ENK---------- 316 (433)
T ss_dssp EEEEEEEEE-E-------------------CEEEEEECS-------------S--------------TTE----------
T ss_pred cEEeeccCC-C-------------------CcceEEECC-------------C--------------CCE----------
Confidence 765554211 0 012233321 0 000
Q ss_pred chhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeE
Q 005349 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS 325 (701)
Q Consensus 246 ~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is 325 (701)
.++.+..++.|++||+.+++.+..+. |...+.
T Consensus 317 -----------------------------------------------l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~ 348 (433)
T 3bws_A 317 -----------------------------------------------IYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPN 348 (433)
T ss_dssp -----------------------------------------------EEEEETTTTEEEEEETTTTEEEEEEE-CSSSEE
T ss_pred -----------------------------------------------EEEEecCCCEEEEEECCCCcEEEEec-CCCCCC
Confidence 01123457899999999998888876 677899
Q ss_pred EEEEcCCCCEEEEEeC---------------CCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC
Q 005349 326 ALCFDPSGILLVTASV---------------QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 390 (701)
Q Consensus 326 ~laFSPdG~lLaTaS~---------------dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp 390 (701)
+++|+|||++|++++. ||+ |++||+.++ ..+..+.. ...+.+++|+|
T Consensus 349 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~-v~~~d~~~~--------------~~~~~~~~---~~~~~~~~~s~ 410 (433)
T 3bws_A 349 TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK-VYVIDTTTD--------------TVKEFWEA---GNQPTGLDVSP 410 (433)
T ss_dssp EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE-EEEEETTTT--------------EEEEEEEC---SSSEEEEEECT
T ss_pred eEEEcCCCCEEEEEecCCCccccccccccccceE-EEEEECCCC--------------cEEEEecC---CCCCceEEEcC
Confidence 9999999999998887 455 999999876 55555542 23589999999
Q ss_pred CCCEEEEEeC-CCcEEEEecCC
Q 005349 391 DSNWIMISSS-RGTSHLFAINP 411 (701)
Q Consensus 391 Dg~~lAsgS~-dgTI~Iwdl~~ 411 (701)
||++|++++. |++|+||+++.
T Consensus 411 dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 411 DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCEEEEEETTTTEEEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEEecC
Confidence 9999998875 99999999874
No 111
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.77 E-value=3.7e-17 Score=177.13 Aligned_cols=115 Identities=16% Similarity=0.208 Sum_probs=86.9
Q ss_pred ccccCCCCeEEEEECCC-CcEEE-------EeecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEEcCCCCCCCCCccCC
Q 005349 294 FPDADNVGMVIVRDIVS-KNVIA-------QFRAHKSPISALCFDPSG-ILLVTASVQGHNINIFKIIPGILGTSSACDA 364 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s-~~~i~-------~~~~H~~~Is~laFSPdG-~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~ 364 (701)
++++ .||.|+|||+.+ ++.+. .+.+|...|.+++|+|+| .+|++|+.||+ |+|||+..+...
T Consensus 192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~~~~~------- 262 (447)
T 3dw8_B 192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDMRASALC------- 262 (447)
T ss_dssp EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEETTTCSSS-------
T ss_pred EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEECcCCccc-------
Confidence 4455 699999999994 44544 366999999999999999 99999999998 999999876100
Q ss_pred CCceeEEEEEeccCCc-----------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCC-CCCceeecCCC
Q 005349 365 GTSYVHLYRLQRGLTN-----------AVIQDISFSDDSNWIMISSSRGTSHLFAINP-LGGSVNFQPTD 422 (701)
Q Consensus 365 ~~~~~~l~~l~rG~~~-----------a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~-~g~~~~~~~H~ 422 (701)
...+..+ .++.. ..|.+++|+|||++|++++. ++|+|||+.. ......+..|.
T Consensus 263 ---~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 263 ---DRHSKLF-EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp ---CTTCEEE-CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred ---cceeeEe-ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence 0012233 22221 25999999999999999999 9999999986 44444666663
No 112
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.77 E-value=6.8e-17 Score=166.28 Aligned_cols=106 Identities=18% Similarity=0.210 Sum_probs=81.3
Q ss_pred cccCCCCeEEEEECCCCcEEEEee-------------cCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEEcCCCCCCC
Q 005349 295 PDADNVGMVIVRDIVSKNVIAQFR-------------AHKSPISALCFDPS---GILLVTASVQGHNINIFKIIPGILGT 358 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~~i~~~~-------------~H~~~Is~laFSPd---G~lLaTaS~dGt~I~Iwdl~~~~~~~ 358 (701)
+.+..||.|+|||+.+++.+..+. .|...|.+++|+|+ +.+|++++.+|. +.+|+...+
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~~---- 202 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKDG---- 202 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTTS----
T ss_pred EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCCC----
Confidence 345678999999999876544433 68899999999997 999999999986 666666544
Q ss_pred CCccCCCCceeEEEEEeccCCcccEEEEEEcCCC----CEEEEEeCCCcEEEEecCCCCCc
Q 005349 359 SSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDS----NWIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 359 ~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg----~~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
....+..+ .++ ...|.+++|+|++ ++|++++.||+|+|||+......
T Consensus 203 --------~~~~~~~~-~~h-~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 253 (351)
T 3f3f_A 203 --------KLHVAAKL-PGH-KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSP 253 (351)
T ss_dssp --------CEEEEEEC-CCC-CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--
T ss_pred --------ceeeeeec-CCC-CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCc
Confidence 12334444 344 3469999999998 89999999999999999865433
No 113
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.77 E-value=2.1e-16 Score=164.22 Aligned_cols=215 Identities=12% Similarity=0.145 Sum_probs=153.7
Q ss_pred eeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcEE
Q 005349 40 VHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVV 119 (701)
Q Consensus 40 ~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tV 119 (701)
++..+..|.++|+++++.|+. ..+|+.++. +++|
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~-------------~~~l~S~s~---------------------------------D~~i 63 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQF-------------PDMILSASR---------------------------------DKTI 63 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTC-------------TTEEEEEET---------------------------------TSCE
T ss_pred EEEEECCccCCEEEEEEeCCC-------------CCEEEEEcC---------------------------------CCeE
Confidence 344566899999999998741 125554432 2779
Q ss_pred EEEECCCCc-----EEEEEec-CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCccc
Q 005349 120 HFYSLRSQS-----YVHMLKF-RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (701)
Q Consensus 120 riWdl~tg~-----~v~tL~f-~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~ 190 (701)
+|||+.+++ ++++++. ...|.+++|+ +++|++ +.|+.|++|+............+..
T Consensus 64 ~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~-------------- 129 (340)
T 4aow_A 64 IMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK-------------- 129 (340)
T ss_dssp EEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--------------
T ss_pred EEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCC--------------
Confidence 999998764 4566654 6799999996 466666 6789999999998776555543211
Q ss_pred ceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccccc
Q 005349 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (701)
Q Consensus 191 ~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~ 270 (701)
... .+.+..
T Consensus 130 -~~~----~~~~~~------------------------------------------------------------------ 138 (340)
T 4aow_A 130 -DVL----SVAFSS------------------------------------------------------------------ 138 (340)
T ss_dssp -CEE----EEEECT------------------------------------------------------------------
T ss_pred -cee----EEEEee------------------------------------------------------------------
Confidence 000 011110
Q ss_pred CCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcE-EEEeecCCCCeEEEEEcCCC--CEEEEEeCCCcEEE
Q 005349 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV-IAQFRAHKSPISALCFDPSG--ILLVTASVQGHNIN 347 (701)
Q Consensus 271 p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~-i~~~~~H~~~Is~laFSPdG--~lLaTaS~dGt~I~ 347 (701)
+ ...++++..||.+++||+..... ...+.+|...|.+++|++++ .++++++.|++ |+
T Consensus 139 -~------------------~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i~ 198 (340)
T 4aow_A 139 -D------------------NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL-VK 198 (340)
T ss_dssp -T------------------SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC-EE
T ss_pred -c------------------CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE-EE
Confidence 0 01223456789999999987654 34566999999999999875 57899999998 89
Q ss_pred EEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCC
Q 005349 348 IFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (701)
Q Consensus 348 Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H 421 (701)
+||+.++ ..+..+ .++. ..|.+|+|+||+++|++++.||+|+|||+........+..|
T Consensus 199 i~d~~~~--------------~~~~~~-~~h~-~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~ 256 (340)
T 4aow_A 199 VWNLANC--------------KLKTNH-IGHT-GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256 (340)
T ss_dssp EEETTTT--------------EEEEEE-CCCS-SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS
T ss_pred EEECCCC--------------ceeeEe-cCCC-CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC
Confidence 9999876 555555 4543 45999999999999999999999999999876554455443
No 114
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.2e-17 Score=197.76 Aligned_cols=198 Identities=13% Similarity=0.071 Sum_probs=149.2
Q ss_pred eccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECC
Q 005349 46 RYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLR 125 (701)
Q Consensus 46 ~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~ 125 (701)
.|.+.|.++++.|+. .+||..+. +++|+|||..
T Consensus 15 gh~~~V~~lafspdg--------------~~lAsgs~---------------------------------Dg~I~lw~~~ 47 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQ--------------NLLAIATV---------------------------------TGEVHIYGQQ 47 (902)
T ss_dssp ECSSCEEEEEEETTT--------------TEEEEEET---------------------------------TSEEEEECST
T ss_pred CCCCCcEEEEECCCC--------------CEEEEEeC---------------------------------CCEEEEEeCC
Confidence 578999999998753 36665542 2789999999
Q ss_pred CCcEEEEEecCCCEEEEEec-CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEc
Q 005349 126 SQSYVHMLKFRSPIYSVRCS-SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYS 203 (701)
Q Consensus 126 tg~~v~tL~f~s~V~sV~~s-~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya 203 (701)
+++++.++.+..+|.+|+|+ +++|++ +.|++|++||+.+++++.++. ++. .+ ..+++.
T Consensus 48 ~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~---------------~V----~~v~~s 107 (902)
T 2oaj_A 48 QVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF-VPG---------------KI----TSIDTD 107 (902)
T ss_dssp TCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE-CSS---------------CE----EEEECC
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc-CCC---------------CE----EEEEEC
Confidence 99988887778899999997 454555 678999999999998887774 211 01 112222
Q ss_pred CCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCCCCCccccccCC
Q 005349 204 GSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPG 283 (701)
Q Consensus 204 ~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~ 283 (701)
. + +.
T Consensus 108 p-------------~--------------g~------------------------------------------------- 111 (902)
T 2oaj_A 108 A-------------S--------------LD------------------------------------------------- 111 (902)
T ss_dssp T-------------T--------------CS-------------------------------------------------
T ss_pred C-------------C--------------CC-------------------------------------------------
Confidence 0 0 00
Q ss_pred CCCCCcccccccccCCCCeEEEEECCCCcEE-----------EEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEEc
Q 005349 284 GKSNGTVNGHFPDADNVGMVIVRDIVSKNVI-----------AQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKI 351 (701)
Q Consensus 284 ~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i-----------~~~~~H~~~Is~laFSPd-G~lLaTaS~dGt~I~Iwdl 351 (701)
.++.+..||.|++||+.++++. ..+++|.++|.+|+|+|+ +.+|++|+.||+ | |||+
T Consensus 112 ---------~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~-v-lWd~ 180 (902)
T 2oaj_A 112 ---------WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVT-L-TYSL 180 (902)
T ss_dssp ---------EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCE-E-EEET
T ss_pred ---------EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCc-E-EEEC
Confidence 1223456899999999988764 234689999999999996 579999999987 8 9999
Q ss_pred CCCCCCCCCccCCCCceeEEEEEeccC-----------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 352 IPGILGTSSACDAGTSYVHLYRLQRGL-----------------TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 352 ~~~~~~~~s~~~~~~~~~~l~~l~rG~-----------------~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
.++ ..+..+. ++ +...|.+++|+|||++||+++.||+|+|||+.+.
T Consensus 181 ~~~--------------~~~~~~~-~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 181 VEN--------------EIKQSFI-YELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp TTT--------------EEEEEEC-CCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred CCC--------------ceEEEEe-cccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 876 4554542 22 1245999999999999999999999999999874
No 115
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.76 E-value=3.4e-16 Score=161.05 Aligned_cols=228 Identities=15% Similarity=0.189 Sum_probs=149.3
Q ss_pred cEEEEEECCCCcEEEEEec---CCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCccc
Q 005349 117 TVVHFYSLRSQSYVHMLKF---RSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f---~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~ 190 (701)
++|+|||+.+|++++++++ ...|.+|+|+ +++|++ +.|++|++||+.++++++++..|... .
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~------------~ 112 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------------V 112 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC------------E
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce------------E
Confidence 7899999999999999975 3479999996 467776 67899999999999999998876431 1
Q ss_pred ceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccccc
Q 005349 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (701)
Q Consensus 191 ~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~ 270 (701)
..++..++.|+.++... .+..+.......... ...++..... .
T Consensus 113 ~~~~~~~~~l~s~~~~~---------------------------~~~~~~~~~~~~~~~--~~~~~~~~~~----~---- 155 (318)
T 4ggc_A 113 GSLSWNSYILSSGSRSG---------------------------HIHHHDVRVAEHHVA--TLSGHSQEVC----G---- 155 (318)
T ss_dssp EEEEEETTEEEEEETTS---------------------------EEEEEETTSSSCEEE--EEECCSSCEE----E----
T ss_pred EEeecCCCEEEEEecCC---------------------------ceEeeecCCCceeEE--EEcCccCceE----E----
Confidence 22344445555543211 000000000000000 0001100000 0
Q ss_pred CCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCc----EEEEeecCCCCeEEEEEcCCCCE-E--EEEeCCC
Q 005349 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGIL-L--VTASVQG 343 (701)
Q Consensus 271 p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~----~i~~~~~H~~~Is~laFSPdG~l-L--aTaS~dG 343 (701)
..... . ...++++..||.|+|||+.+++ .+.....|..+|.+++|+|++.. + ++++.++
T Consensus 156 --------~~~~~---~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 221 (318)
T 4ggc_A 156 --------LRWAP---D---GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 221 (318)
T ss_dssp --------EEECT---T---SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTC
T ss_pred --------EEEcC---C---CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCC
Confidence 00000 0 1245667889999999998764 34566788899999999997653 3 4666777
Q ss_pred cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEe--CCCcEEEEecCCCCCceeecCC
Q 005349 344 HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS--SRGTSHLFAINPLGGSVNFQPT 421 (701)
Q Consensus 344 t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS--~dgTI~Iwdl~~~g~~~~~~~H 421 (701)
+ |+|||.... ....... ....+..++|+|+++.+++++ .|++|+|||+.+......+++|
T Consensus 222 ~-i~lwd~~~~--------------~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH 283 (318)
T 4ggc_A 222 H-IRIWNVCSG--------------ACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 283 (318)
T ss_dssp E-EEEEETTTC--------------CEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred E-EEEEecccc--------------ccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC
Confidence 6 999998875 3333322 224599999999999988765 7999999999987777788888
Q ss_pred CCCc
Q 005349 422 DANF 425 (701)
Q Consensus 422 ~~~~ 425 (701)
.+.+
T Consensus 284 ~~~V 287 (318)
T 4ggc_A 284 TSRV 287 (318)
T ss_dssp SSCE
T ss_pred CCCE
Confidence 6543
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.75 E-value=1e-16 Score=175.71 Aligned_cols=103 Identities=15% Similarity=0.281 Sum_probs=85.1
Q ss_pred cccCCCCeEEEEECCCC---cEEEEeecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeE
Q 005349 295 PDADNVGMVIVRDIVSK---NVIAQFRAHKSPISALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~---~~i~~~~~H~~~Is~laFSPdG~-lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~ 370 (701)
+++..+|.|+|||+.++ +.+..+++|..+|.+|+|+|+|. +||+++.||+ |+|||+.... ..
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~~-------------~~ 313 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDLRNLK-------------LK 313 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTT-------------SC
T ss_pred EEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCCC-------------CC
Confidence 34567899999999987 67888899999999999999997 7999999997 9999998640 23
Q ss_pred EEEEeccCCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCC
Q 005349 371 LYRLQRGLTNAVIQDISFSDDSN-WIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 371 l~~l~rG~~~a~I~~iaFSpDg~-~lAsgS~dgTI~Iwdl~~~g 413 (701)
+..+. ++ ...|.+|+|+|+++ +|++++.||+|+|||+...+
T Consensus 314 ~~~~~-~h-~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 314 LHSFE-SH-KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp SEEEE-CC-SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred eEEee-cC-CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 34443 33 34699999999995 69999999999999998754
No 117
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.1e-17 Score=175.02 Aligned_cols=111 Identities=17% Similarity=0.282 Sum_probs=89.3
Q ss_pred ccccCCCCeEEEEECCCCcEEEEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEE-
Q 005349 294 FPDADNVGMVIVRDIVSKNVIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL- 371 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~i~~~~-~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l- 371 (701)
++++..||.|+|||+.+++++..+. .|..+|.+++|+|||.+||+|+.||+ |+|||+.++ ..+
T Consensus 142 l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~-i~iwd~~~~--------------~~~~ 206 (343)
T 3lrv_A 142 FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI-LDVYNLSSP--------------DQAS 206 (343)
T ss_dssp EEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC-EEEEESSCT--------------TSCC
T ss_pred EEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE-EEEEECCCC--------------CCCc
Confidence 4456788999999999999877775 45568999999999999999999998 999999886 222
Q ss_pred EEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCC
Q 005349 372 YRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (701)
Q Consensus 372 ~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H 421 (701)
..+..++ ...|.+++|+|||++|+++++ ++|+|||+........+..+
T Consensus 207 ~~~~~~h-~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~ 254 (343)
T 3lrv_A 207 SRFPVDE-EAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTY 254 (343)
T ss_dssp EECCCCT-TSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCC
T ss_pred cEEeccC-CCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeeccc
Confidence 3443223 356999999999999999995 59999999887655555543
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=9.1e-17 Score=176.75 Aligned_cols=107 Identities=15% Similarity=0.120 Sum_probs=88.6
Q ss_pred cCCCCeEEEEECCCCcEEE----EeecCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCcee
Q 005349 297 ADNVGMVIVRDIVSKNVIA----QFRAHKSPISALCFDPS---GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYV 369 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~----~~~~H~~~Is~laFSPd---G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~ 369 (701)
+..+|.|++||+.+++... .+.+|..+|.+|+|+|+ |++|++++.||+ |+|||+.++ .
T Consensus 167 ~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~~--------------~ 231 (450)
T 2vdu_B 167 ADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQC--------------F 231 (450)
T ss_dssp EETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESCT--------------T
T ss_pred EeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCCC--------------c
Confidence 3457899999998876543 78899999999999999 999999999998 999999876 3
Q ss_pred EEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecC
Q 005349 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (701)
Q Consensus 370 ~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~ 420 (701)
.+..+..++. ..|.+++|+ |+++|++++.|++|+|||+........+..
T Consensus 232 ~~~~~~~~h~-~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 232 IVDKWLFGHK-HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp CEEEECCCCS-SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred eeeeeecCCC-CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence 4555444554 469999999 999999999999999999987654445543
No 119
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.8e-16 Score=186.73 Aligned_cols=233 Identities=11% Similarity=0.132 Sum_probs=156.0
Q ss_pred CCcEEEEecc-CCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCc
Q 005349 17 TRRVLLLGYR-SGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGL 95 (701)
Q Consensus 17 ~~~vL~~g~~-~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~ 95 (701)
..++|+.|.. +.++|||... .+.... ..|.++|.+++|.| . .+|+.++.
T Consensus 28 dg~~lAsgs~Dg~I~lw~~~~-~~~~~~-~~~~~~V~~l~fsp-g--------------~~L~S~s~------------- 77 (902)
T 2oaj_A 28 TQNLLAIATVTGEVHIYGQQQ-VEVVIK-LEDRSAIKEMRFVK-G--------------IYLVVINA------------- 77 (902)
T ss_dssp TTTEEEEEETTSEEEEECSTT-CEEEEE-CSSCCCEEEEEEET-T--------------TEEEEEET-------------
T ss_pred CCCEEEEEeCCCEEEEEeCCC-cEEEEE-cCCCCCEEEEEEcC-C--------------CEEEEEEC-------------
Confidence 3556666654 5599999875 222222 24678999999986 2 14554432
Q ss_pred ccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEe
Q 005349 96 ATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAIL 172 (701)
Q Consensus 96 ~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~ 172 (701)
+++|+|||++++++++++.++..|.+|+|+ +++|++ +.+++|++||+.+.++. .+.
T Consensus 78 --------------------D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~ 136 (902)
T 2oaj_A 78 --------------------KDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFK 136 (902)
T ss_dssp --------------------TCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEE
T ss_pred --------------------cCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cce
Confidence 278999999999999999999999999997 467776 56899999999987653 111
Q ss_pred cCCCc---cCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhc
Q 005349 173 TNPIV---MGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAA 249 (701)
Q Consensus 173 t~~~~---~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~ 249 (701)
..... ....+ ..+++ .-|++..
T Consensus 137 i~~~~~~~~~~~~------h~~~V----~sl~~sp--------------------------------------------- 161 (902)
T 2oaj_A 137 LDNLQKSSFFPAA------RLSPI----VSIQWNP--------------------------------------------- 161 (902)
T ss_dssp ECCHHHHHTCSSS------CCCCC----CEEEEET---------------------------------------------
T ss_pred ecccccccccccc------CCCCe----EEEEEcc---------------------------------------------
Confidence 10000 00000 00000 1122210
Q ss_pred eeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecC---------
Q 005349 250 GIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH--------- 320 (701)
Q Consensus 250 gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H--------- 320 (701)
++ ...++.+..+|.| |||+.+++++..+..|
T Consensus 162 ----------------------~~-----------------~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~ 201 (902)
T 2oaj_A 162 ----------------------RD-----------------IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGD 201 (902)
T ss_dssp ----------------------TE-----------------EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCST
T ss_pred ----------------------CC-----------------CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcc
Confidence 00 0122345678999 9999999999988876
Q ss_pred ---------CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE--Ee--ccC---------
Q 005349 321 ---------KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR--LQ--RGL--------- 378 (701)
Q Consensus 321 ---------~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~--l~--rG~--------- 378 (701)
...|.+++|+|||++||||+.||+ |+|||+.++ +.+.. +. .++
T Consensus 202 ~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~~g--------------~~~~~r~l~~~~~~~~~~~~~~~ 266 (902)
T 2oaj_A 202 FSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDANSG--------------HMIMARTVFETEINVPQPDYIRD 266 (902)
T ss_dssp TCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETTTC--------------CEEEEECSSCSCTTSCCTTCCCC
T ss_pred cccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCC--------------cEEEEEeecccccCCCCCcCCCC
Confidence 578999999999999999999998 899999876 33322 21 011
Q ss_pred ---CcccEEEEEEc----CCC-CEEEEEeCC-----CcEEEEecC
Q 005349 379 ---TNAVIQDISFS----DDS-NWIMISSSR-----GTSHLFAIN 410 (701)
Q Consensus 379 ---~~a~I~~iaFS----pDg-~~lAsgS~d-----gTI~Iwdl~ 410 (701)
+...|.+++|+ ||+ .+|++|+.| .++++|++.
T Consensus 267 ~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 267 SSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp CSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred CccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 12359999995 554 577888776 389999863
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.73 E-value=3.4e-16 Score=163.48 Aligned_cols=260 Identities=11% Similarity=0.096 Sum_probs=158.0
Q ss_pred CeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcE
Q 005349 39 NVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTV 118 (701)
Q Consensus 39 ~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~t 118 (701)
...+++..|.+.|.++++.|+.. ...+|+.++. +++
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~-----------~g~~l~~~~~---------------------------------dg~ 65 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTL-----------PGNFLIAGSW---------------------------------AND 65 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTS-----------SSEEEEEEET---------------------------------TSE
T ss_pred ceeEeccCCCCceEEEEEcCCCC-----------CceEEEEECC---------------------------------CCc
Confidence 44556678999999999987410 0124554442 177
Q ss_pred EEEEECCC-CcEE-EEEe-cCCCEEEEEec--CCEEEE-EeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 119 VHFYSLRS-QSYV-HMLK-FRSPIYSVRCS--SRVVAI-CQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 119 VriWdl~t-g~~v-~tL~-f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
|+|||+++ ++.+ ..+. +...|.+++|+ +++|++ +.++.|++||+.+.+.... ..+.. .+..
T Consensus 66 i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~------------~v~~ 132 (368)
T 3mmy_A 66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI-AQHDA------------PVKT 132 (368)
T ss_dssp EEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EECSS------------CEEE
T ss_pred EEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee-ccccC------------ceEE
Confidence 99999998 6555 5555 47899999996 456666 5688999999999886653 33321 1223
Q ss_pred eee--cc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccc
Q 005349 193 LAV--GP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSE 268 (701)
Q Consensus 193 iAl--s~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~ 268 (701)
+++ ++ ++|+.++.+ ..+..|..+..+.+.. + ...+
T Consensus 133 ~~~~~~~~~~~l~~~~~d---------------------------g~i~vwd~~~~~~~~~-~-~~~~------------ 171 (368)
T 3mmy_A 133 IHWIKAPNYSCVMTGSWD---------------------------KTLKFWDTRSSNPMMV-L-QLPE------------ 171 (368)
T ss_dssp EEEEECSSCEEEEEEETT---------------------------SEEEEECSSCSSCSEE-E-ECSS------------
T ss_pred EEEEeCCCCCEEEEccCC---------------------------CcEEEEECCCCcEEEE-E-ecCC------------
Confidence 444 33 344444321 1111111111110000 0 0000
Q ss_pred ccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEE-ee-cCCCCeEEEEEcCCCCE----EEEEeCC
Q 005349 269 FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQ-FR-AHKSPISALCFDPSGIL----LVTASVQ 342 (701)
Q Consensus 269 ~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~-~~-~H~~~Is~laFSPdG~l----LaTaS~d 342 (701)
....... ....+..+..++.+++||+........ +. .+...+.++++.+++.. |++++.|
T Consensus 172 -------~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (368)
T 3mmy_A 172 -------RCYCADV-------IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE 237 (368)
T ss_dssp -------CEEEEEE-------ETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred -------CceEEEe-------cCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence 0000000 001223355688999999987654332 22 45567788888777665 9999999
Q ss_pred CcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCc-----------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 343 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN-----------AVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 343 Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~-----------a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
|. |+|||+.... ....++.+ +++.. ..|.+++|+||+++|++++.||+|+|||+..
T Consensus 238 g~-i~i~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 238 GR-VAIHYINPPN-----------PAKDNFTF-KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp SE-EEEEESSCSC-----------HHHHSEEE-ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred Cc-EEEEecCCCC-----------ccccceee-eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence 97 8999998651 00122233 12221 1499999999999999999999999999987
Q ss_pred CCCceeecCCCC
Q 005349 412 LGGSVNFQPTDA 423 (701)
Q Consensus 412 ~g~~~~~~~H~~ 423 (701)
......+..|..
T Consensus 305 ~~~~~~~~~~~~ 316 (368)
T 3mmy_A 305 RTKLKTSEQLDQ 316 (368)
T ss_dssp TEEEEECCCCSS
T ss_pred CcEEEEecCCCC
Confidence 655556666643
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.8e-16 Score=183.46 Aligned_cols=210 Identities=13% Similarity=0.195 Sum_probs=147.6
Q ss_pred EEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcccccCCCCCCCCCCCCCCCCCcEEEE
Q 005349 42 DLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLATACNGTSANYHDLGNGSSVPTVVHF 121 (701)
Q Consensus 42 elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~tVri 121 (701)
.++..|.++|+++.+.|+. .+|+.++. +++|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg--------------~~latg~~---------------------------------dg~I~v 35 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYG--------------KRLATCSS---------------------------------DKTIKI 35 (753)
T ss_dssp -----CCCCEEEECCCSSS--------------CCEEEEET---------------------------------TTEEEE
T ss_pred eecccCcceeEEEEECCCC--------------CeEEEEEC---------------------------------CCcEEE
Confidence 4566799999999987642 24554432 178999
Q ss_pred EECC--CCcEEEEEe-cCCCEEEEEec----CCEEEE-EeCCEEEEEECCCCc--eeEEEecCCCccCCCCCCCCCcccc
Q 005349 122 YSLR--SQSYVHMLK-FRSPIYSVRCS----SRVVAI-CQAAQVHCFDAATLE--IEYAILTNPIVMGHPSAGGIGIGYG 191 (701)
Q Consensus 122 Wdl~--tg~~v~tL~-f~s~V~sV~~s----~~~LaV-a~~~~I~iwDl~t~~--~~~tl~t~~~~~~~~~~~~~~~~~~ 191 (701)
||+. +++++.++. +..+|.+|+|+ +++|++ +.|++|++||+.+++ ....+..+..
T Consensus 36 wd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~--------------- 100 (753)
T 3jro_A 36 FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSA--------------- 100 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS---------------
T ss_pred EecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCC---------------
Confidence 9998 556777776 46799999996 566766 678999999999876 3344333311
Q ss_pred eeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccC
Q 005349 192 PLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLP 271 (701)
Q Consensus 192 piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p 271 (701)
++ ..+++.. +. .+
T Consensus 101 ~V----~~v~~sp-------------~~------------~~-------------------------------------- 113 (753)
T 3jro_A 101 SV----NSVQWAP-------------HE------------YG-------------------------------------- 113 (753)
T ss_dssp CE----EEEEECC-------------GG------------GC--------------------------------------
T ss_pred Ce----EEEEECC-------------CC------------CC--------------------------------------
Confidence 11 1122321 00 00
Q ss_pred CCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCC--cEEEEeecCCCCeEEEEEcC-------------CCCEE
Q 005349 272 DSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSK--NVIAQFRAHKSPISALCFDP-------------SGILL 336 (701)
Q Consensus 272 ~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~--~~i~~~~~H~~~Is~laFSP-------------dG~lL 336 (701)
..++++..||.|+|||+.++ .....+.+|..+|.+++|+| +|.+|
T Consensus 114 --------------------~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l 173 (753)
T 3jro_A 114 --------------------PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173 (753)
T ss_dssp --------------------SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCE
T ss_pred --------------------CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEE
Confidence 02234567899999999887 34556789999999999999 59999
Q ss_pred EEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCC---CCEEEEEeCCCcEEEEecCCCC
Q 005349 337 VTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD---SNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 337 aTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpD---g~~lAsgS~dgTI~Iwdl~~~g 413 (701)
++|+.||+ |++||+..+. .....+..+ .++. ..|.+++|+|| +++|++++.||+|+|||+....
T Consensus 174 ~sgs~dg~-I~iwd~~~~~----------~~~~~~~~~-~~h~-~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 174 VTGGADNL-VKIWKYNSDA----------QTYVLESTL-EGHS-DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp EEEETTSC-EEEEEEETTT----------TEEEEEEEE-CCCS-SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred EEEECCCe-EEEEeccCCc----------ccceeeeee-cCCC-CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 99999998 9999998651 111333444 3443 46999999999 9999999999999999998754
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.71 E-value=3.9e-15 Score=161.01 Aligned_cols=238 Identities=13% Similarity=0.108 Sum_probs=158.6
Q ss_pred CCcEEEEeccC-CeEEEEecCCCCeeEEe-----eeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCcc
Q 005349 17 TRRVLLLGYRS-GFQVWDVEEADNVHDLV-----SRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTK 90 (701)
Q Consensus 17 ~~~vL~~g~~~-g~qVwdv~~~~~~~elv-----s~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~ 90 (701)
.+.+++.+..+ .+++||++. ++....+ ..|.+.|.++.+.|+. .+++.+..
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~~s~~~-------- 189 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINS-GQTVRLSPPEKYKKKLGFVETISIPEHN--------------ELWVSQMQ-------- 189 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTT-CCEEEECCCHHHHTTCCEEEEEEEGGGT--------------EEEEEEGG--------
T ss_pred CCeEEEEeCCCCeEEEEECCC-CeEeeecCcccccccCCceeEEEEcCCC--------------EEEEEECC--------
Confidence 35666666554 499999987 4454422 2567789988885532 13332221
Q ss_pred ccCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-CCCEEEEEec--CCEEE-EE-eCCEEEEEECCCC
Q 005349 91 VQDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-RSPIYSVRCS--SRVVA-IC-QAAQVHCFDAATL 165 (701)
Q Consensus 91 ~~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~s~V~sV~~s--~~~La-Va-~~~~I~iwDl~t~ 165 (701)
+++|++||+++++.+.++.. ...+.+++|+ ++.++ ++ .++.|++||+.++
T Consensus 190 -------------------------d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 190 -------------------------ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp -------------------------GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred -------------------------CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence 17799999999999999875 5689999997 45554 44 4789999999998
Q ss_pred ceeEEEecCCCccCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchh
Q 005349 166 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSK 245 (701)
Q Consensus 166 ~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk 245 (701)
+.+..+.... . + ..+++..+ |..+
T Consensus 245 ~~~~~~~~~~-------------~--~-----~~~~~~~~---------------------------g~~l--------- 268 (433)
T 3bws_A 245 LEIRKTDKIG-------------L--P-----RGLLLSKD---------------------------GKEL--------- 268 (433)
T ss_dssp EEEEECCCCS-------------E--E-----EEEEECTT---------------------------SSEE---------
T ss_pred cEEEEecCCC-------------C--c-----eEEEEcCC---------------------------CCEE---------
Confidence 8765553321 0 1 12233210 1110
Q ss_pred chhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeE
Q 005349 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPIS 325 (701)
Q Consensus 246 ~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is 325 (701)
+.+-. + . + .+ ...+|.|++||+.+++.+..+ .|...+.
T Consensus 269 --~~~~~-----~-----------------------~-----~----~~--~~~dg~i~~~d~~~~~~~~~~-~~~~~~~ 306 (433)
T 3bws_A 269 --YIAQF-----S-----------------------A-----S----NQ--ESGGGRLGIYSMDKEKLIDTI-GPPGNKR 306 (433)
T ss_dssp --EEEEE-----E-----------------------S-----C----TT--CSCCEEEEEEETTTTEEEEEE-EEEECEE
T ss_pred --EEEEC-----C-----------------------C-----C----cc--ccCCCeEEEEECCCCcEEeec-cCCCCcc
Confidence 00000 0 0 0 00 125789999999999877665 5556899
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC----
Q 005349 326 ALCFDPSGI-LLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS---- 400 (701)
Q Consensus 326 ~laFSPdG~-lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~---- 400 (701)
+++|+|+|+ ++++++.+|+ |++||+.++ ..+..+.. ...+.+++|+|||++|++++.
T Consensus 307 ~~~~~~~g~~l~~~~~~~~~-v~v~d~~~~--------------~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~ 368 (433)
T 3bws_A 307 HIVSGNTENKIYVSDMCCSK-IEVYDLKEK--------------KVQKSIPV---FDKPNTIALSPDGKYLYVSCRGPNH 368 (433)
T ss_dssp EEEECSSTTEEEEEETTTTE-EEEEETTTT--------------EEEEEEEC---SSSEEEEEECTTSSEEEEEECCCCC
T ss_pred eEEECCCCCEEEEEecCCCE-EEEEECCCC--------------cEEEEecC---CCCCCeEEEcCCCCEEEEEecCCCc
Confidence 999999997 5566788876 999999876 45555532 235899999999999998887
Q ss_pred -----------CCcEEEEecCCCCCceee
Q 005349 401 -----------RGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 401 -----------dgTI~Iwdl~~~g~~~~~ 418 (701)
||+|++||+.+......+
T Consensus 369 ~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 369 PTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp TTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred cccccccccccceEEEEEECCCCcEEEEe
Confidence 579999999765333333
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.70 E-value=1.4e-15 Score=163.46 Aligned_cols=55 Identities=11% Similarity=0.158 Sum_probs=48.0
Q ss_pred ccCCCCeEEEEECCCCcEEEEeecCCCCeE-EEEEcCCCCEEEEEeCCCcEEEEEEc
Q 005349 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPIS-ALCFDPSGILLVTASVQGHNINIFKI 351 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is-~laFSPdG~lLaTaS~dGt~I~Iwdl 351 (701)
++..||+|+|||+.+++++.+|++|...+. +++|||||++||||+.|++ |||||+
T Consensus 300 SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T-IklWd~ 355 (356)
T 2w18_A 300 AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN-IFVYHY 355 (356)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC-EEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc-EEEecC
Confidence 455789999999999999999999987654 6999999999999999998 999996
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.69 E-value=2.8e-15 Score=162.65 Aligned_cols=204 Identities=7% Similarity=-0.022 Sum_probs=121.8
Q ss_pred CCcEEEEEECCCCcEEEE--Ee----cCCCEEEEEecC----------CEEEE-EeCCEEEEEECCCCceeEEEecCCCc
Q 005349 115 VPTVVHFYSLRSQSYVHM--LK----FRSPIYSVRCSS----------RVVAI-CQAAQVHCFDAATLEIEYAILTNPIV 177 (701)
Q Consensus 115 ~~~tVriWdl~tg~~v~t--L~----f~s~V~sV~~s~----------~~LaV-a~~~~I~iwDl~t~~~~~tl~t~~~~ 177 (701)
.+++|+|||++++++... +. +...|.+|+|++ ++||. +.|++|+|||+.+..++..+..+...
T Consensus 109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~ 188 (393)
T 4gq1_A 109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP 188 (393)
T ss_dssp TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC
T ss_pred CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC
Confidence 358899999999986543 21 467899999963 67776 57899999999988877776665321
Q ss_pred cCCCCCCCCCcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCc
Q 005349 178 MGHPSAGGIGIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDL 257 (701)
Q Consensus 178 ~~~~~~~~~~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~ 257 (701)
.. -++|.. . +.
T Consensus 189 --------------v~-----~v~~~p-------------~--------------~~----------------------- 199 (393)
T 4gq1_A 189 --------------GI-----SVQFRP-------------S--------------NP----------------------- 199 (393)
T ss_dssp --------------EE-----EEEEET-------------T--------------EE-----------------------
T ss_pred --------------cE-----EEEECC-------------C--------------CC-----------------------
Confidence 11 133321 0 00
Q ss_pred cceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEE----------------------
Q 005349 258 GYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIA---------------------- 315 (701)
Q Consensus 258 g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~---------------------- 315 (701)
..++++..||+|+|||+.+++...
T Consensus 200 ----------------------------------~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 200 ----------------------------------NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp ----------------------------------EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred ----------------------------------ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 012234567788888887654322
Q ss_pred ---EeecCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCC--CCceeEEEEEeccCCcccEEEEEEc
Q 005349 316 ---QFRAHKSPISALCFD-PSGILLVTASVQGHNINIFKIIPGILGTSSACDA--GTSYVHLYRLQRGLTNAVIQDISFS 389 (701)
Q Consensus 316 ---~~~~H~~~Is~laFS-PdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~--~~~~~~l~~l~rG~~~a~I~~iaFS 389 (701)
...+|...|.+++|+ |||++|++++.|++ ++|||+..+.......... ..........+..........++|+
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCC-EEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 234788899999997 79999999999987 8999998752111000000 0000000000000001112234454
Q ss_pred C--CCCEEEEEeCCCcEEEEecCCCCCceeecCCC
Q 005349 390 D--DSNWIMISSSRGTSHLFAINPLGGSVNFQPTD 422 (701)
Q Consensus 390 p--Dg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~ 422 (701)
| |+.++++|+.||+|+|||+.+......+..|.
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~ 359 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG 359 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence 4 56678889999999999999877666666664
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.68 E-value=1.9e-14 Score=157.90 Aligned_cols=238 Identities=16% Similarity=0.114 Sum_probs=159.4
Q ss_pred CcEEEEecc------CCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccc
Q 005349 18 RRVLLLGYR------SGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKV 91 (701)
Q Consensus 18 ~~vL~~g~~------~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~ 91 (701)
.+++.++.. +.+++||++. ++. ..+..|.+.|.++++.|+. ..|+.+....
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g-~~~-~~l~~~~~~v~~~~~Spdg--------------~~la~~s~~~------- 200 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDG-YNQ-FVVHRSPQPLMSPAWSPDG--------------SKLAYVTFES------- 200 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTS-CSC-EEEEEESSCEEEEEECTTS--------------SEEEEEECTT-------
T ss_pred CEEEEEEecCCCCccceEEEEcCCC-CCC-EEEeCCCCcceeeEEcCCC--------------CEEEEEEecC-------
Confidence 455555554 5689999974 444 4455588999999998854 2466555321
Q ss_pred cCCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEEe----CCEEEEEECCCC
Q 005349 92 QDGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQ----AAQVHCFDAATL 165 (701)
Q Consensus 92 ~d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa~----~~~I~iwDl~t~ 165 (701)
...+|++||++++++.....+...+.+++|+ ++.|+++. ..+|++||+.++
T Consensus 201 -----------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~ 257 (415)
T 2hqs_A 201 -----------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 257 (415)
T ss_dssp -----------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred -----------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence 0167999999999987666678899999997 46677432 346999999987
Q ss_pred ceeEEEecCCCccCCCCCCCCCcccceeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhc
Q 005349 166 EIEYAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKES 243 (701)
Q Consensus 166 ~~~~tl~t~~~~~~~~~~~~~~~~~~piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~ 243 (701)
+. ..+..+.. ....++++| ++|+|.+.
T Consensus 258 ~~-~~l~~~~~------------~~~~~~~spdg~~l~~~s~-------------------------------------- 286 (415)
T 2hqs_A 258 QI-RQVTDGRS------------NNTEPTWFPDSQNLAFTSD-------------------------------------- 286 (415)
T ss_dssp CE-EECCCCSS------------CEEEEEECTTSSEEEEEEC--------------------------------------
T ss_pred CE-EeCcCCCC------------cccceEECCCCCEEEEEEC--------------------------------------
Confidence 64 34433211 011122221 22222100
Q ss_pred hhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCC
Q 005349 244 SKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSP 323 (701)
Q Consensus 244 sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~ 323 (701)
......|.+||+.+++. ..+..|...
T Consensus 287 -----------------------------------------------------~~g~~~i~~~d~~~~~~-~~l~~~~~~ 312 (415)
T 2hqs_A 287 -----------------------------------------------------QAGRPQVYKVNINGGAP-QRITWEGSQ 312 (415)
T ss_dssp -----------------------------------------------------TTSSCEEEEEETTSSCC-EECCCSSSE
T ss_pred -----------------------------------------------------CCCCcEEEEEECCCCCE-EEEecCCCc
Confidence 00112688889988764 456677788
Q ss_pred eEEEEEcCCCCEEEEEeCC-C-cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCC
Q 005349 324 ISALCFDPSGILLVTASVQ-G-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 324 Is~laFSPdG~lLaTaS~d-G-t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d 401 (701)
+.+++|||||++|++++.+ | ..|.+||+.++ .. ..+..+ ..+.+++|+|||++|++++.+
T Consensus 313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~--------------~~-~~l~~~---~~~~~~~~spdg~~l~~~s~~ 374 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG--------------GV-QVLSST---FLDETPSLAPNGTMVIYSSSQ 374 (415)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEETTTC--------------CE-EECCCS---SSCEEEEECTTSSEEEEEEEE
T ss_pred ccCeEECCCCCEEEEEECcCCceEEEEEECCCC--------------CE-EEecCC---CCcCCeEEcCCCCEEEEEEcC
Confidence 9999999999999998875 2 35999999876 22 334322 258999999999999999887
Q ss_pred C---cEEEEecCCCCCceeecCCCCCc
Q 005349 402 G---TSHLFAINPLGGSVNFQPTDANF 425 (701)
Q Consensus 402 g---TI~Iwdl~~~g~~~~~~~H~~~~ 425 (701)
+ +|.+||+. .+....+..|.+.+
T Consensus 375 ~~~~~l~~~d~~-g~~~~~l~~~~~~v 400 (415)
T 2hqs_A 375 GMGSVLNLVSTD-GRFKARLPATDGQV 400 (415)
T ss_dssp TTEEEEEEEETT-SCCEEECCCSSSEE
T ss_pred CCccEEEEEECC-CCcEEEeeCCCCCC
Confidence 7 79999986 34555666665433
No 126
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.64 E-value=2.2e-13 Score=140.89 Aligned_cols=99 Identities=10% Similarity=0.121 Sum_probs=78.1
Q ss_pred eEEEEECCCCcEE-EEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCc
Q 005349 302 MVIVRDIVSKNVI-AQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (701)
Q Consensus 302 ~V~IwDl~s~~~i-~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~ 380 (701)
.|.+||+.+++.. ..+..|...+.+++|+|||++|+++ +++ |.+||+.++ +.+..+..+
T Consensus 220 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v~~~d~~~~--------------~~~~~~~~~--- 279 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDLEKN--------------ASIKRVPLP--- 279 (337)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEETTTT--------------EEEEEEECS---
T ss_pred ceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-EEEEECCCC--------------cCcceecCC---
Confidence 6899999998764 3345777788999999999999988 455 999999876 444555433
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecC
Q 005349 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (701)
Q Consensus 381 a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~ 420 (701)
..+.+++|+|||++|++++.+++|++||+.+......+..
T Consensus 280 ~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 2478999999999999999999999999987654444543
No 127
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.62 E-value=1.8e-13 Score=142.40 Aligned_cols=273 Identities=9% Similarity=0.077 Sum_probs=160.1
Q ss_pred CcEEEEec-cCCeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGY-RSGFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~-~~g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
..+++.+. ++.+.+||+++ ++....+.....++ .+.+.|+. ..|.++..+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~-~~~~s~dg--------------~~l~~~~~~------------- 60 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDT-LEILNQITLGYDFV-DTAITSDC--------------SNVVVTSDF------------- 60 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTT-CCEEEEEECCCCEE-EEEECSSS--------------CEEEEEEST-------------
T ss_pred CEEEEEecCCCeEEEEeCcc-cceeeeEEccCCcc-eEEEcCCC--------------CEEEEEeCC-------------
Confidence 45455544 55699999987 55655555455555 77776642 234444431
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEECCCCcE-EEEEecCCCEEE-EEec--CCEEEEEeCC----EEEEEECCCCcee
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSLRSQSY-VHMLKFRSPIYS-VRCS--SRVVAICQAA----QVHCFDAATLEIE 168 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~-v~tL~f~s~V~s-V~~s--~~~LaVa~~~----~I~iwDl~t~~~~ 168 (701)
.++|.+||+.+++. +..+........ ++++ +++|+++... +|++||+.+++.+
T Consensus 61 -------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~ 121 (331)
T 3u4y_A 61 -------------------CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFI 121 (331)
T ss_dssp -------------------TCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEE
T ss_pred -------------------CCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeE
Confidence 16799999999998 777776554455 8886 5677765544 8999999999887
Q ss_pred EEEecCCCccCCCCCCCCCcccceeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcc-eeehhhhchh
Q 005349 169 YAILTNPIVMGHPSAGGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSR-VAHYAKESSK 245 (701)
Q Consensus 169 ~tl~t~~~~~~~~~~~~~~~~~~piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~-v~~~a~~~sk 245 (701)
..+..... ...++++| ++|..+... +.. +..|..+...
T Consensus 122 ~~~~~~~~-------------~~~~~~spdg~~l~~~~~~--------------------------~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 122 STIPIPYD-------------AVGIAISPNGNGLILIDRS--------------------------SANTVRRFKIDADG 162 (331)
T ss_dssp EEEECCTT-------------EEEEEECTTSSCEEEEEET--------------------------TTTEEEEEEECTTC
T ss_pred EEEECCCC-------------ccceEECCCCCEEEEEecC--------------------------CCceEEEEEECCCC
Confidence 77654321 12355555 344433110 011 2111111100
Q ss_pred chhceeEEcCCccceecccccccccCCCCCccccc-cCCCCCCCcccccccccCCCCeEEEEECCCCcE---EEEeecCC
Q 005349 246 HLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSA-IPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNV---IAQFRAHK 321 (701)
Q Consensus 246 ~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a-~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~---i~~~~~H~ 321 (701)
.+.. .. ... .+.+......+ .++ |. ..++....++.|.+||+.+++. +..+..+
T Consensus 163 ~~~~----~~---~~~--------~~~~~~~~~~~~spd----g~--~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~- 220 (331)
T 3u4y_A 163 VLFD----TG---QEF--------ISGGTRPFNITFTPD----GN--FAFVANLIGNSIGILETQNPENITLLNAVGTN- 220 (331)
T ss_dssp CEEE----EE---EEE--------ECSSSSEEEEEECTT----SS--EEEEEETTTTEEEEEECSSTTSCEEEEEEECS-
T ss_pred cEee----cC---Ccc--------ccCCCCccceEECCC----CC--EEEEEeCCCCeEEEEECCCCcccceeeeccCC-
Confidence 0000 00 000 00000000000 011 10 0233445678999999999988 8888765
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC--Cccc---EEEEEEcCCCCEEE
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL--TNAV---IQDISFSDDSNWIM 396 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~--~~a~---I~~iaFSpDg~~lA 396 (701)
..+..++|+|||++|+.++.....|.+||+.++ ....+..+..+. .... ..+++|+|||++|+
T Consensus 221 ~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 221 NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG------------TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT------------EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC------------ceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 566889999999977766654445999999876 222244443331 1111 35689999999987
Q ss_pred EEeC-CCcEEEEecCC
Q 005349 397 ISSS-RGTSHLFAINP 411 (701)
Q Consensus 397 sgS~-dgTI~Iwdl~~ 411 (701)
+++. +++|.|||+..
T Consensus 289 v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 289 ISANISRELKVFTISG 304 (331)
T ss_dssp EEETTTTEEEEEETTS
T ss_pred EecCCCCcEEEEEecC
Confidence 6655 56999999975
No 128
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.4e-14 Score=164.71 Aligned_cols=112 Identities=12% Similarity=0.062 Sum_probs=82.7
Q ss_pred cccCCCCeEEEEECCCCc-------EEEEe----ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccC
Q 005349 295 PDADNVGMVIVRDIVSKN-------VIAQF----RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACD 363 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~-------~i~~~----~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~ 363 (701)
+.+..||+|+|||+.++. .+.++ .+|...|.+++|+||| ||+++.|++ |++||+..+.
T Consensus 145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~-------- 213 (588)
T 2j04_A 145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASS-------- 213 (588)
T ss_dssp EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSS--------
T ss_pred EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCc--------
Confidence 345679999999999885 36777 6788899999999999 788888987 9999997651
Q ss_pred CCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCCCCC
Q 005349 364 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPTDAN 424 (701)
Q Consensus 364 ~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H~~~ 424 (701)
......++..++ ...|.+++|+ |++||+++ +++|++||+..........+|.+.
T Consensus 214 ---~~~~~~tL~~~h-~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~ 267 (588)
T 2j04_A 214 ---HQPVSRMIQNAS-RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLEN 267 (588)
T ss_dssp ---SCCCEEEEECCC-SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred ---cccceeeecccc-cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence 001223454444 3469999999 68999998 699999999864332222366543
No 129
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.6e-14 Score=164.32 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=76.5
Q ss_pred cCCCCeEEEEECCCCc---EEEEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 297 ADNVGMVIVRDIVSKN---VIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~---~i~~~~-~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
+..|+.|++||+.+++ ...+++ +|...|.+|+|+ |+.||+++ +|+ |++||+..+ .. .
T Consensus 198 ss~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t-IkLWd~~~~--------------~~-~ 258 (588)
T 2j04_A 198 ALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY-VHKIDLKNY--------------SI-S 258 (588)
T ss_dssp EETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE-EEEEETTTT--------------EE-E
T ss_pred EeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe-EEEEECCCC--------------eE-E
Confidence 3457899999999877 346674 898999999999 79999998 566 999999875 22 2
Q ss_pred EEeccCCcccEEEEEE--cCCCCEEEEEeCCCcEEEEecC
Q 005349 373 RLQRGLTNAVIQDISF--SDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaF--SpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
.+..|+ .+.|.+++| |||++.|++++.||+ +||.++
T Consensus 259 ~~~~gh-~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 259 SLKTGS-LENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEECSC-CSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEcCC-CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 333364 456999999 999999999999999 999987
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.59 E-value=6.5e-13 Score=151.38 Aligned_cols=281 Identities=15% Similarity=0.179 Sum_probs=169.6
Q ss_pred CcEEEEeccC-CeEEEEecCCCCeeEEeeeccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCCcc
Q 005349 18 RRVLLLGYRS-GFQVWDVEEADNVHDLVSRYDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDGLA 96 (701)
Q Consensus 18 ~~vL~~g~~~-g~qVwdv~~~~~~~elvs~~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~~~ 96 (701)
.++++.++.. .+.|||.++ +++...+..+.. +..+.+.|+. ..|++++.
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t-~~~~~~i~~g~~-~~~v~~spdg--------------~~l~v~~~-------------- 198 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDS-KKIVKVIDTGYA-VHISRMSASG--------------RYLLVIGR-------------- 198 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTT-CCEEEEEECSTT-EEEEEECTTS--------------CEEEEEET--------------
T ss_pred CEEEEEEcCCCeEEEEECCC-ceEEEEEecCcc-cceEEECCCC--------------CEEEEECC--------------
Confidence 5667776654 599999987 556555553333 7888887753 24554442
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEEEC--CCCcEEEEEecCCCEEEEEecC------CEEEEE--eCCEEEEEECCCCc
Q 005349 97 TACNGTSANYHDLGNGSSVPTVVHFYSL--RSQSYVHMLKFRSPIYSVRCSS------RVVAIC--QAAQVHCFDAATLE 166 (701)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~tVriWdl--~tg~~v~tL~f~s~V~sV~~s~------~~LaVa--~~~~I~iwDl~t~~ 166 (701)
+++|++||+ .+++++.++.....++.|+|++ ++|+++ .+++|.+||..+++
T Consensus 199 -------------------d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 199 -------------------DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp -------------------TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred -------------------CCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 167999999 8999999999877889999975 567664 47999999999999
Q ss_pred eeEEEecCCCccC----CCCCCCCCcccceeeecc---ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeeh
Q 005349 167 IEYAILTNPIVMG----HPSAGGIGIGYGPLAVGP---RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHY 239 (701)
Q Consensus 167 ~~~tl~t~~~~~~----~~~~~~~~~~~~piAls~---r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~ 239 (701)
++.++.+...... .+. .....+++++ ++++-.. ....|..+
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~-----~~v~~i~~s~~~~~~~vs~~---------------------------~~g~i~vv 307 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPE-----PRVAAIIASHEHPEFIVNVK---------------------------ETGKVLLV 307 (543)
T ss_dssp EEEEEECCEECSSSCCEESC-----CCEEEEEECSSSSEEEEEET---------------------------TTTEEEEE
T ss_pred cceeecccCcccCccccccC-----CceEEEEECCCCCEEEEEEC---------------------------CCCeEEEE
Confidence 9988876321000 000 0111233332 2221110 01112111
Q ss_pred hhhchhchhceeEEcCCccceeccccccc--ccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEe
Q 005349 240 AKESSKHLAAGIVNLGDLGYKKLSQYCSE--FLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQF 317 (701)
Q Consensus 240 a~~~sk~la~gl~~lGd~g~~~ls~y~~~--~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~ 317 (701)
..+..+.+. +..+.. .++... +.|++ . -.++....+++|.|||+.+++++..+
T Consensus 308 d~~~~~~l~--~~~i~~------~~~~~~~~~spdg---------------~--~l~va~~~~~~v~v~D~~tg~l~~~i 362 (543)
T 1nir_A 308 NYKDIDNLT--VTSIGA------APFLHDGGWDSSH---------------R--YFMTAANNSNKVAVIDSKDRRLSALV 362 (543)
T ss_dssp ECTTSSSCE--EEEEEC------CSSCCCEEECTTS---------------C--EEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EecCCCcce--eEEecc------CcCccCceECCCC---------------C--EEEEEecCCCeEEEEECCCCeEEEee
Confidence 111111110 000000 000000 01111 0 01234456789999999999999988
Q ss_pred ec----CCCCeEEEEEcCC-CCEEEEEe-CCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCC
Q 005349 318 RA----HKSPISALCFDPS-GILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 391 (701)
Q Consensus 318 ~~----H~~~Is~laFSPd-G~lLaTaS-~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpD 391 (701)
.. |.+....+ ++|+ |.+++|++ .|++ |.|||+.+... .....+++.++. ++. ..+..|+|+||
T Consensus 363 ~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~-V~v~d~~~~~~-------~~~~~~~v~~l~-~~g-~~~~~v~~~pd 431 (543)
T 1nir_A 363 DVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGS-ISLIGTDPKNH-------PQYAWKKVAELQ-GQG-GGSLFIKTHPK 431 (543)
T ss_dssp ECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE-EEEEECCTTTC-------TTTBTSEEEEEE-CSC-SCCCCEECCTT
T ss_pred ccCCCCCCCCCccc-CCCCCccEEEeccCCCce-EEEEEeCCCCC-------chhcCeEEEEEE-cCC-CCceEEEcCCC
Confidence 84 76555444 5787 88888886 4666 99999987300 001125666764 332 23678999999
Q ss_pred CCEEEEEe-------CCCcEEEEecCCCCCc
Q 005349 392 SNWIMISS-------SRGTSHLFAINPLGGS 415 (701)
Q Consensus 392 g~~lAsgS-------~dgTI~Iwdl~~~g~~ 415 (701)
|++|++++ .+++|.|||+.+....
T Consensus 432 g~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 432 SSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp CCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 99999988 2779999999987654
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.55 E-value=6.3e-12 Score=130.18 Aligned_cols=103 Identities=9% Similarity=0.213 Sum_probs=68.8
Q ss_pred CCCeEEEEECCC-CcEEE----Eeec-CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 299 NVGMVIVRDIVS-KNVIA----QFRA-HKSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 299 ~dG~V~IwDl~s-~~~i~----~~~~-H~~~Is~laFSPdG~lLaTaS-~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
.++.|.+||+.+ ++... .+.. ....+.+++|+|||++|+.++ .+++ |++||+... .+ ....+
T Consensus 149 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~-~g---------~~~~~ 217 (343)
T 1ri6_A 149 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDP-HG---------NIECV 217 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCT-TS---------CCEEE
T ss_pred CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCC-CC---------cEEEE
Confidence 457899999987 54432 3333 345788999999999776655 5665 999999642 00 11222
Q ss_pred EEEe---ccCC-cccEEEEEEcCCCCEEEEE-eCCCcEEEEecCCC
Q 005349 372 YRLQ---RGLT-NAVIQDISFSDDSNWIMIS-SSRGTSHLFAINPL 412 (701)
Q Consensus 372 ~~l~---rG~~-~a~I~~iaFSpDg~~lAsg-S~dgTI~Iwdl~~~ 412 (701)
..+. .++. ...+.+++|+|||++|+++ ..+++|++|++...
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~ 263 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED 263 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC
Confidence 2222 1211 1237789999999988854 47999999999853
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.55 E-value=1.2e-12 Score=143.34 Aligned_cols=94 Identities=20% Similarity=0.175 Sum_probs=71.8
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCC-Cc-EEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GH-NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~d-Gt-~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
..|++||+.+++. ..+..|...+.+++|+|||++|++++.+ |+ .|.+||+.++ . +..+..
T Consensus 247 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~--------------~-~~~l~~-- 308 (415)
T 2hqs_A 247 LNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG--------------A-PQRITW-- 308 (415)
T ss_dssp CEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--------------C-CEECCC--
T ss_pred ceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC--------------C-EEEEec--
Confidence 4699999998876 6788899999999999999999988864 42 3667787665 1 112211
Q ss_pred CcccEEEEEEcCCCCEEEEEeCC---CcEEEEecCCC
Q 005349 379 TNAVIQDISFSDDSNWIMISSSR---GTSHLFAINPL 412 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~d---gTI~Iwdl~~~ 412 (701)
....+.+++|||||++|++++.+ .+|++||+...
T Consensus 309 ~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 309 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 12358899999999999988865 58999999753
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.54 E-value=1e-12 Score=132.25 Aligned_cols=98 Identities=11% Similarity=0.042 Sum_probs=71.9
Q ss_pred CCCeEEEEEC--CCCcEEEEeecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe
Q 005349 299 NVGMVIVRDI--VSKNVIAQFRAHKSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (701)
Q Consensus 299 ~dG~V~IwDl--~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS-~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~ 375 (701)
.++.++||++ .++ ....+..|...+.+++|+|||++|+.++ .++. ++||++.... ..+..+.
T Consensus 149 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~-------------~~~~~~~ 213 (297)
T 2ojh_A 149 RDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDG-------------SSVERIT 213 (297)
T ss_dssp ETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTS-------------SCEEECC
T ss_pred CCCceEEEEEECCCC-cceEcccCCCccccceECCCCCEEEEEecCCCC-ccEEEECCCC-------------CCcEEEe
Confidence 3567788875 344 4467778888999999999999888776 4776 8999986320 2233332
Q ss_pred ccCCcccEEEEEEcCCCCEEEEEeCC-----------CcEEEEecCCCC
Q 005349 376 RGLTNAVIQDISFSDDSNWIMISSSR-----------GTSHLFAINPLG 413 (701)
Q Consensus 376 rG~~~a~I~~iaFSpDg~~lAsgS~d-----------gTI~Iwdl~~~g 413 (701)
. + ...+.+++|+|||++|++++.+ ++|.+||+....
T Consensus 214 ~-~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 214 D-S-AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp C-C-SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred c-C-CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 2 1 2358899999999999998876 569999997643
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.54 E-value=1.2e-11 Score=129.21 Aligned_cols=97 Identities=9% Similarity=0.132 Sum_probs=75.5
Q ss_pred CCCeEEEEECCCCcEEEEeec----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 299 NVGMVIVRDIVSKNVIAQFRA----HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~----H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
.++.|.+||+.+++.+..+.. +...+..++|+|||++|+.++.++..|.+||+.++ ..+..+
T Consensus 204 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~--------------~~~~~~ 269 (353)
T 3vgz_A 204 ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG--------------NILAKV 269 (353)
T ss_dssp TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC--------------CEEEEE
T ss_pred CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC--------------cEEEEE
Confidence 367899999999998888774 56678899999999988777766445999999876 444454
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCC
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLG 413 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~~g 413 (701)
.-+. -.+++|+|||+++++++ .+++|++||+.+..
T Consensus 270 ~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 270 AAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp ECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred EcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 4332 24699999999776665 68999999997653
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.50 E-value=4.7e-12 Score=144.23 Aligned_cols=189 Identities=9% Similarity=0.076 Sum_probs=131.2
Q ss_pred cEEEEEECCCCcEEE--EEecCCCEEEEEec--CCEEEE-E-eCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCccc
Q 005349 117 TVVHFYSLRSQSYVH--MLKFRSPIYSVRCS--SRVVAI-C-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGY 190 (701)
Q Consensus 117 ~tVriWdl~tg~~v~--tL~f~s~V~sV~~s--~~~LaV-a-~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~ 190 (701)
++|.+||+.+++.+. ++.....+..+.|+ +++|.+ + .+++|.+||+.+++++.++.....+. ++
T Consensus 302 g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph--~g-------- 371 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH--PG-------- 371 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC--CT--------
T ss_pred CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC--CC--------
Confidence 789999999887655 66656678889996 565555 3 36899999999999888876532111 00
Q ss_pred ceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccccc
Q 005349 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (701)
Q Consensus 191 ~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~ 270 (701)
+..++.. |+ .|.
T Consensus 372 -------~g~~~~~------------p~-------------~g~------------------------------------ 383 (543)
T 1nir_A 372 -------RGANFVH------------PK-------------YGP------------------------------------ 383 (543)
T ss_dssp -------TCEEEEE------------TT-------------TEE------------------------------------
T ss_pred -------CCcccCC------------CC-------------Ccc------------------------------------
Confidence 0011100 00 000
Q ss_pred CCCCCccccccCCCCCCCccccccccc-CCCCeEEEEECCC-------CcEEEEeecCCCCeEEEEEcCCCCEEEEEeC-
Q 005349 271 PDSQNSLQSAIPGGKSNGTVNGHFPDA-DNVGMVIVRDIVS-------KNVIAQFRAHKSPISALCFDPSGILLVTASV- 341 (701)
Q Consensus 271 p~~~~s~~~a~~~~~~~g~~~~~~~~~-~~dG~V~IwDl~s-------~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~- 341 (701)
.+++. ..+++|.|||+.+ .+++++++.|...+..|+|+|||++|.+++.
T Consensus 384 ----------------------~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~ 441 (543)
T 1nir_A 384 ----------------------VWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTF 441 (543)
T ss_dssp ----------------------EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTT
T ss_pred ----------------------EEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCC
Confidence 01111 2468999999998 8999999999999999999999999999872
Q ss_pred ------CCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe-c------cCCcccEEEEEEcCCCCEEEEEe-----CCCc
Q 005349 342 ------QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-R------GLTNAVIQDISFSDDSNWIMISS-----SRGT 403 (701)
Q Consensus 342 ------dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~-r------G~~~a~I~~iaFSpDg~~lAsgS-----~dgT 403 (701)
+++ |.|||+.++ ..+++.- = +.....+..++|+|||++|..+. .|++
T Consensus 442 ~~~~~~~~~-v~v~d~~~~--------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~ 506 (543)
T 1nir_A 442 NPDARISQS-VAVFDLKNL--------------DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSA 506 (543)
T ss_dssp CSSHHHHTC-EEEEETTCT--------------TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCE
T ss_pred CCCcccCce-EEEEECCCC--------------CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCe
Confidence 445 999999987 2222210 0 01123588999999999999772 4799
Q ss_pred EEEEecCCCCCceeecC
Q 005349 404 SHLFAINPLGGSVNFQP 420 (701)
Q Consensus 404 I~Iwdl~~~g~~~~~~~ 420 (701)
|.|||..+......++.
T Consensus 507 i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 507 LVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp EEEEETTTTEEEEEECC
T ss_pred EEEEECCCceEEEeecC
Confidence 99999998766556654
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.50 E-value=9.5e-12 Score=128.84 Aligned_cols=103 Identities=11% Similarity=0.157 Sum_probs=69.6
Q ss_pred CCCeEEEEECCC--CcE--EEEee---cC---CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCCCCCCCCccCCCCc
Q 005349 299 NVGMVIVRDIVS--KNV--IAQFR---AH---KSPISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTS 367 (701)
Q Consensus 299 ~dG~V~IwDl~s--~~~--i~~~~---~H---~~~Is~laFSPdG~lLaTaS-~dGt~I~Iwdl~~~~~~~~s~~~~~~~ 367 (701)
.++.|.+||+.. ++. +..+. .+ ...+.+++|+|||++|+.+. .+++ |++||+... ...
T Consensus 198 ~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~~~----------~~~ 266 (343)
T 1ri6_A 198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSED----------GSV 266 (343)
T ss_dssp TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTT----------SCC
T ss_pred CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEcCC----------CCc
Confidence 467899999853 332 33332 11 24677899999999877544 5665 999999742 001
Q ss_pred eeEEEEEeccCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCCc
Q 005349 368 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGS 415 (701)
Q Consensus 368 ~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~~g~~ 415 (701)
...+..+..+ ..+.+++|+|||++|++++ .+++|.||+++...+.
T Consensus 267 ~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 267 LSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp EEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred eEEeeeecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 2344444322 2278899999999999888 6899999988765443
No 137
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.49 E-value=9.2e-12 Score=129.51 Aligned_cols=94 Identities=7% Similarity=0.071 Sum_probs=70.5
Q ss_pred EECCCCcE-EEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccE
Q 005349 306 RDIVSKNV-IAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVI 383 (701)
Q Consensus 306 wDl~s~~~-i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I 383 (701)
+|+.+++. +..+..+...+..++|+| ||++|+++ +++ |.+||+.++ +.+..+..+ ..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~--------------~~~~~~~~~---~~~ 297 (349)
T 1jmx_B 238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQR--------------KLIKAANLD---HTY 297 (349)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTT--------------EEEEEEECS---SCC
T ss_pred EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccC--------------eEEEEEcCC---CCc
Confidence 67766643 223345667889999999 99999988 555 999999876 455555433 236
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 005349 384 QDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 384 ~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~ 419 (701)
.+++|+|||++|++++.+++|++||+.+......+.
T Consensus 298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 298 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred cceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 789999999999999889999999998754443443
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.48 E-value=1e-12 Score=152.27 Aligned_cols=229 Identities=13% Similarity=0.114 Sum_probs=135.2
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEEeCCEEEEEECCC-----CceeEEEecCCC-c-cCCCCC-CCC
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAAT-----LEIEYAILTNPI-V-MGHPSA-GGI 186 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa~~~~I~iwDl~t-----~~~~~tl~t~~~-~-~~~~~~-~~~ 186 (701)
++|++||+.+++..........+.+++|+ ++.|+.+.+++|++||+.+ ++.......... . .+.+-. ..
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee- 179 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE- 179 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC-
T ss_pred CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh-
Confidence 56999999999887766677788889997 5788888899999999998 765432211100 0 000000 00
Q ss_pred Ccccceeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccc
Q 005349 187 GIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQ 264 (701)
Q Consensus 187 ~~~~~piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~ 264 (701)
.-....++++| ++|||+..+ ...+ +. . -+...+. .+..+..
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d-----~~~~-~~-----------------~-------------~~~~~~~-~~~~~~~ 222 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMD-----QSMV-KP-----------------T-------------PIVDYHP-LEAESKP 222 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEE-----CTTS-CC-----------------E-------------EEEECCS-SSCEEEE
T ss_pred cCCCceEEECCCCCEEEEEEEC-----CCCC-ce-----------------E-------------EeeccCC-CCCceEE
Confidence 00012356665 777776311 0000 00 0 0000000 0000000
Q ss_pred ccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEee--cCCCCeEEEEEcCCCCEEEEEeCC
Q 005349 265 YCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQ 342 (701)
Q Consensus 265 y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~--~H~~~Is~laFSPdG~lLaTaS~d 342 (701)
+. .| .+ | ....+..|.+||+.+++...... .|...|.+++|||||++|++++.+
T Consensus 223 ~~---y~---------~~-----g-------~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 278 (706)
T 2z3z_A 223 LY---YP---------MA-----G-------TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN 278 (706)
T ss_dssp EC---CC---------BT-----T-------SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC
T ss_pred ee---CC---------CC-----C-------CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeC
Confidence 00 00 00 0 12345789999999987654442 577789999999999999998876
Q ss_pred C----cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcc---cEEEEEEcC--CCCEEEEEeCCCcEEEEecCCCC
Q 005349 343 G----HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA---VIQDISFSD--DSNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 343 G----t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a---~I~~iaFSp--Dg~~lAsgS~dgTI~Iwdl~~~g 413 (701)
+ ..|.+||+.++ ..+..+....... .+.+++||| ||++|++++.|++++||.++..+
T Consensus 279 ~~~~~~~v~~~d~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~ 344 (706)
T 2z3z_A 279 RAQNECKVNAYDAETG--------------RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG 344 (706)
T ss_dssp TTSCEEEEEEEETTTC--------------CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred CCCCeeEEEEEECCCC--------------ceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence 5 24899998765 1222222111111 146789999 99999999999999999998444
Q ss_pred Cc-eeecCC
Q 005349 414 GS-VNFQPT 421 (701)
Q Consensus 414 ~~-~~~~~H 421 (701)
+. ..+..|
T Consensus 345 ~~~~~l~~~ 353 (706)
T 2z3z_A 345 RLIRQVTKG 353 (706)
T ss_dssp CEEEECCCS
T ss_pred CEEEecCCC
Confidence 43 344444
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.46 E-value=2.1e-12 Score=150.19 Aligned_cols=107 Identities=11% Similarity=0.032 Sum_probs=74.8
Q ss_pred CeEEEEECCC-CcEEEEee--cCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 301 GMVIVRDIVS-KNVIAQFR--AHKSPISALCFDPSGILLVTASV-----QGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 301 G~V~IwDl~s-~~~i~~~~--~H~~~Is~laFSPdG~lLaTaS~-----dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
..|.+||+.+ ++...... .|...+..++| |||++|+.++. ++ .|.+||+.++ ....+.
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~-~i~~~d~~~g------------~~~~~~ 328 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKL-DLVEVTLASN------------QQRVLA 328 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEE-EEEEEETTTC------------CEEEEE
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeE-EEEEEECCCC------------ceEEEE
Confidence 3788899998 87655443 47789999999 99999998764 33 4899999876 122222
Q ss_pred EEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCC
Q 005349 373 RLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H 421 (701)
.......-..+.+++|||||+++++++.||+++||.++..++...+..|
T Consensus 329 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~ 377 (741)
T 2ecf_A 329 HETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHG 377 (741)
T ss_dssp EEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCS
T ss_pred EcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeec
Confidence 2211100002468999999999999999999999998755444444444
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.45 E-value=1.3e-11 Score=124.11 Aligned_cols=181 Identities=12% Similarity=0.114 Sum_probs=121.0
Q ss_pred CCcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEEeCCEEEEEECCC-CceeEEEecCCCccCCCCCCCCCcccc
Q 005349 115 VPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAAT-LEIEYAILTNPIVMGHPSAGGIGIGYG 191 (701)
Q Consensus 115 ~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa~~~~I~iwDl~t-~~~~~tl~t~~~~~~~~~~~~~~~~~~ 191 (701)
.+++|++||+.+++....+.+...|.+++|+ +++|+++.++.|++||+.+ ++.......+.. ..+.
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----------~~~~ 88 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFAT-----------ICNN 88 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCC-----------CBCS
T ss_pred cceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecccccc-----------cccc
Confidence 4589999999999988878888899999997 5788888899999999998 765433222110 0011
Q ss_pred eeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccc
Q 005349 192 PLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEF 269 (701)
Q Consensus 192 piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~ 269 (701)
.++++| ++|++...
T Consensus 89 ~~~~spdg~~l~~~~~---------------------------------------------------------------- 104 (297)
T 2ojh_A 89 DHGISPDGALYAISDK---------------------------------------------------------------- 104 (297)
T ss_dssp CCEECTTSSEEEEEEC----------------------------------------------------------------
T ss_pred ceEECCCCCEEEEEEe----------------------------------------------------------------
Confidence 122222 22222200
Q ss_pred cCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEE
Q 005349 270 LPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLV-TASVQGHNINI 348 (701)
Q Consensus 270 ~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLa-TaS~dGt~I~I 348 (701)
.......|.++|+.+++ ...+..+. .+.+++|+|||++|+ +++.+++ ++|
T Consensus 105 --------------------------~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~-~~l 155 (297)
T 2ojh_A 105 --------------------------VEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQV-FDI 155 (297)
T ss_dssp --------------------------TTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTE-EEE
T ss_pred --------------------------CCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCc-eEE
Confidence 00122456666766665 34555444 489999999999887 7778876 899
Q ss_pred EEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCC
Q 005349 349 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 414 (701)
Q Consensus 349 wdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~~g~ 414 (701)
|++.... .....+.. ....+.+++|+|||++|+.++ .+++++||++...++
T Consensus 156 ~~~~~~~-------------~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~ 207 (297)
T 2ojh_A 156 YSMDIDS-------------GVETRLTH--GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS 207 (297)
T ss_dssp EEEETTT-------------CCEEECCC--SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred EEEECCC-------------CcceEccc--CCCccccceECCCCCEEEEEecCCCCccEEEECCCCC
Confidence 9975320 11223322 224589999999999998777 499999999974443
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.43 E-value=8e-11 Score=123.74 Aligned_cols=105 Identities=9% Similarity=0.199 Sum_probs=70.7
Q ss_pred CCCeEEEEECCC--CcE--EEEeecCC------CCeEEEEEcCCCCEE-EEEeCCCcEEEEEEcCCCCCCCCCccCCCCc
Q 005349 299 NVGMVIVRDIVS--KNV--IAQFRAHK------SPISALCFDPSGILL-VTASVQGHNINIFKIIPGILGTSSACDAGTS 367 (701)
Q Consensus 299 ~dG~V~IwDl~s--~~~--i~~~~~H~------~~Is~laFSPdG~lL-aTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~ 367 (701)
.++.|.+||+.. ++. +..+..+. ..+..++|+|||++| ++...+++ |.||++... +.
T Consensus 207 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~~~~~-----------g~ 274 (347)
T 3hfq_A 207 LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFAVTAD-----------GH 274 (347)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEEECGG-----------GC
T ss_pred CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEEECCC-----------Cc
Confidence 457788888774 432 33443332 348899999999987 45555665 999998632 01
Q ss_pred eeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCC-CcEEEEecCCCCCcee
Q 005349 368 YVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGGSVN 417 (701)
Q Consensus 368 ~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d-gTI~Iwdl~~~g~~~~ 417 (701)
...+..+..+ ...+.+++|+|||++|++++.+ ++|.||+++...+...
T Consensus 275 ~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 275 LTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 2344444321 1237899999999999988765 8999998876555544
No 142
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.42 E-value=1.9e-10 Score=121.78 Aligned_cols=105 Identities=16% Similarity=0.224 Sum_probs=70.0
Q ss_pred CCCeEEEEECCCCc-------EE-----EEe-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCC
Q 005349 299 NVGMVIVRDIVSKN-------VI-----AQF-RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAG 365 (701)
Q Consensus 299 ~dG~V~IwDl~s~~-------~i-----~~~-~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~ 365 (701)
.++.|.+|++.... .. ..+ ..+...+..++|+|||++|+.++.....|.+||+.++
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g----------- 243 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG----------- 243 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT-----------
T ss_pred CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC-----------
Confidence 45789999887543 11 122 2344567899999999988887743334999999865
Q ss_pred CceeEEEEEeccCC-cccEEEEEEcCCCCEEEEEeCC--CcEEEEecCCCCCc
Q 005349 366 TSYVHLYRLQRGLT-NAVIQDISFSDDSNWIMISSSR--GTSHLFAINPLGGS 415 (701)
Q Consensus 366 ~~~~~l~~l~rG~~-~a~I~~iaFSpDg~~lAsgS~d--gTI~Iwdl~~~g~~ 415 (701)
....+..+..... .....+++|||||++|+++..+ ++|.||++....+.
T Consensus 244 -~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~ 295 (361)
T 3scy_A 244 -MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT 295 (361)
T ss_dssp -EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred -ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence 2223333322111 1236799999999999776664 89999999754443
No 143
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.39 E-value=4.5e-11 Score=132.18 Aligned_cols=112 Identities=10% Similarity=0.097 Sum_probs=83.2
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 294 FPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 294 ~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
++++..||+|+|||+.++..+..+.+|...|.+++|+|+|++||+|+.||+ |+|||+. + .....
T Consensus 165 las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~-~--------------~~~~~ 228 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT-L--------------QEKKV 228 (434)
T ss_dssp EEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTT-C--------------CEEEE
T ss_pred EEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC-C--------------ccccc
Confidence 344567899999999999877777889999999999999999999999998 8999987 3 12222
Q ss_pred Eec--c---CCcccEEEEEEcCCCCEEEEE-eCCCc------EEEEecCCCCC--ceeecCC
Q 005349 374 LQR--G---LTNAVIQDISFSDDSNWIMIS-SSRGT------SHLFAINPLGG--SVNFQPT 421 (701)
Q Consensus 374 l~r--G---~~~a~I~~iaFSpDg~~lAsg-S~dgT------I~Iwdl~~~g~--~~~~~~H 421 (701)
+.. . .+...|.+++|++++.++++. +.||+ +++|++...+. ...+..+
T Consensus 229 ~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~ 290 (434)
T 2oit_A 229 IPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNF 290 (434)
T ss_dssp ECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEEC
T ss_pred ccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEec
Confidence 211 1 112359999999999988653 34433 89999986543 2344444
No 144
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.39 E-value=3.2e-10 Score=120.04 Aligned_cols=108 Identities=12% Similarity=0.196 Sum_probs=75.7
Q ss_pred CCCeEEEEECCCCcE--EEEee---cCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 299 NVGMVIVRDIVSKNV--IAQFR---AHKSPISALCFDPSGILLVTASVQ-GHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~--i~~~~---~H~~~Is~laFSPdG~lLaTaS~d-Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
.++.|.+||+.+++. +..+. .|......++|||||++|+++..+ ...|.||++... ......+.
T Consensus 231 ~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~----------~g~~~~~~ 300 (361)
T 3scy_A 231 IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET----------NGTLTKVG 300 (361)
T ss_dssp TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT----------TCCEEEEE
T ss_pred CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC----------CCcEEEee
Confidence 467899999987754 33333 444567899999999998777665 345999999632 00223444
Q ss_pred EEeccCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCCceeec
Q 005349 373 RLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~~g~~~~~~ 419 (701)
.+..| ..+.+++|||||++|++++ .+++|.||+++...+.....
T Consensus 301 ~~~~g---~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 301 YQLTG---IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEECS---SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred EecCC---CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 44322 3477999999999999888 67999999888665655443
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.39 E-value=9.2e-12 Score=144.23 Aligned_cols=278 Identities=12% Similarity=0.072 Sum_probs=158.2
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccC---CEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDG---PVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG---~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
.+++..+.++.+++||+++ ++...++..+.. .|..+.+.|+. ..|+++......
T Consensus 28 g~~~~~~~dg~i~~~d~~~-g~~~~~~~~~~~~~~~v~~~~~SpDg--------------~~l~~~~~~~~~-------- 84 (723)
T 1xfd_A 28 TEFIYREQKGTVRLWNVET-NTSTVLIEGKKIESLRAIRYEISPDR--------------EYALFSYNVEPI-------- 84 (723)
T ss_dssp SCBCCCCSSSCEEEBCGGG-CCCEEEECTTTTTTTTCSEEEECTTS--------------SEEEEEESCCCC--------
T ss_pred CcEEEEeCCCCEEEEECCC-CcEEEEeccccccccccceEEECCCC--------------CEEEEEecCccc--------
Confidence 3455556667899999987 567777766654 48889998864 246656542100
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEec-C---CCEEEEEec--CCEEEEEeCCEEEEEECCCCcee
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKF-R---SPIYSVRCS--SRVVAICQAAQVHCFDAATLEIE 168 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f-~---s~V~sV~~s--~~~LaVa~~~~I~iwDl~t~~~~ 168 (701)
. .....+.|.+||+.++++ ..+.. . ..+..++|+ ++.||.+.+++|++||+.+++..
T Consensus 85 ----~------------~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~ 147 (723)
T 1xfd_A 85 ----Y------------QHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAI 147 (723)
T ss_dssp ----S------------SSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCE
T ss_pred ----e------------eecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceE
Confidence 0 011347899999999987 44432 2 237888997 57888888899999999998765
Q ss_pred EEEecCCCcc---CCCCC---CCCCcccceeeecc--ceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehh
Q 005349 169 YAILTNPIVM---GHPSA---GGIGIGYGPLAVGP--RWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYA 240 (701)
Q Consensus 169 ~tl~t~~~~~---~~~~~---~~~~~~~~piAls~--r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a 240 (701)
+......... +.++- ..+.-.+..++++| ++|||+..+. ..+..+.
T Consensus 148 ~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~--------------------------~~~~~~~ 201 (723)
T 1xfd_A 148 RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND--------------------------SRVPIME 201 (723)
T ss_dssp EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC--------------------------TTSCEEE
T ss_pred EEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC--------------------------CccceEE
Confidence 4443221100 00000 00000113466666 7788763210 0000000
Q ss_pred hhchhchhceeEEcCCccceecccccccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecC
Q 005349 241 KESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH 320 (701)
Q Consensus 241 ~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H 320 (701)
. ....+..+..+.. ...+. .|. ...+..|++||+.+++....+..|
T Consensus 202 ~----------~~~~~~~~~~~~~--------------~~~~~---~G~-------~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 202 L----------PTYTGSIYPTVKP--------------YHYPK---AGS-------ENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp E----------CCCSSSSSCCCEE--------------EECCB---TTS-------CCCEEEEEEEESSSSCCCEECCCC
T ss_pred e----------eccCCcCCCccee--------------ccCCC---CCC-------CCCeeEEEEEECCCCceeEEeeCC
Confidence 0 0000000000000 00000 010 123458999999998876777765
Q ss_pred ------CCCeEEEEEcCCCCEEEEEeCCC---cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccE----EEEE
Q 005349 321 ------KSPISALCFDPSGILLVTASVQG---HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVI----QDIS 387 (701)
Q Consensus 321 ------~~~Is~laFSPdG~lLaTaS~dG---t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I----~~ia 387 (701)
...|.+++|||||++|++.+..+ ..|++||+.++ .....+... +...+ .+++
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g--------------~~~~~~~~~-~~~~~~~~~~~~~ 312 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG--------------VCTKKHEDE-SEAWLHRQNEEPV 312 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC--------------CEEEEEEEE-CSSCCCCCCCCCE
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC--------------cceEEEEec-cCCEEeccCCCce
Confidence 66899999999999998775432 35899999876 222222111 11122 3789
Q ss_pred EcCCCCEEEE--EeCCC----cEEEEecC
Q 005349 388 FSDDSNWIMI--SSSRG----TSHLFAIN 410 (701)
Q Consensus 388 FSpDg~~lAs--gS~dg----TI~Iwdl~ 410 (701)
|||||++|+. +..++ +.+||.++
T Consensus 313 ~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 313 FSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp ECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred EcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 9999998875 45677 55665554
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.38 E-value=3.7e-10 Score=118.66 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=68.4
Q ss_pred CCCeEEEEECC-CCcE--EEEeecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 299 NVGMVIVRDIV-SKNV--IAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 299 ~dG~V~IwDl~-s~~~--i~~~~~H~-~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
.++.|.+||+. +++. +..+..+. ..+..++|+|||++|+.++..+..|++|++... ......+..+
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~----------~g~~~~~~~~ 229 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ----------TGAFTQLGIV 229 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT----------TTEEEEEEEE
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC----------CCceEEeeee
Confidence 45789999998 4543 23333333 367889999999977766554445999998752 0011223333
Q ss_pred eccCC----cccEEEEEEcCCCCEEE-EEeCCCcEEEEecCCC
Q 005349 375 QRGLT----NAVIQDISFSDDSNWIM-ISSSRGTSHLFAINPL 412 (701)
Q Consensus 375 ~rG~~----~a~I~~iaFSpDg~~lA-sgS~dgTI~Iwdl~~~ 412 (701)
..... ...+.+++|||||++|+ +...+++|.||++...
T Consensus 230 ~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 230 KTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp ESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred eecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 21111 02388999999999884 5566899999999754
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.38 E-value=6.2e-11 Score=123.64 Aligned_cols=189 Identities=14% Similarity=0.104 Sum_probs=131.9
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEE--eCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa--~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
++|.+||+.+++.+.++.....+..+.++ ++.+.++ .+++|.+||+.+++.+.++....... +. ...|
T Consensus 69 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~------~~~~ 140 (353)
T 3vgz_A 69 GVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR--TE------EVRP 140 (353)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC--CS------SCCC
T ss_pred ccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc--cc------ccCC
Confidence 78999999999999999887778888886 4655553 35799999999999877775431100 00 0000
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
..++-++++. + |..+ +
T Consensus 141 --~~~~~~~~s~-------------d--------------g~~l-----------~------------------------ 156 (353)
T 3vgz_A 141 --LQPRELVADD-------------A--------------TNTV-----------Y------------------------ 156 (353)
T ss_dssp --CEEEEEEEET-------------T--------------TTEE-----------E------------------------
T ss_pred --CCCceEEECC-------------C--------------CCEE-----------E------------------------
Confidence 0112233331 0 1100 0
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII 352 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~ 352 (701)
+.....++.|.+||+.+++.+..+..+...+.+++|+|||++|++++.++. |.+||+.
T Consensus 157 ---------------------~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-i~~~d~~ 214 (353)
T 3vgz_A 157 ---------------------ISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGE-LITIDTA 214 (353)
T ss_dssp ---------------------EEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSE-EEEEETT
T ss_pred ---------------------EEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCe-EEEEECC
Confidence 001124678999999999999988867777889999999999999999886 8999998
Q ss_pred CCCCCCCCccCCCCceeEEEEEeccC--CcccEEEEEEcCCCCEEEEEeCC-CcEEEEecCCCC
Q 005349 353 PGILGTSSACDAGTSYVHLYRLQRGL--TNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLG 413 (701)
Q Consensus 353 ~~~~~~~s~~~~~~~~~~l~~l~rG~--~~a~I~~iaFSpDg~~lAsgS~d-gTI~Iwdl~~~g 413 (701)
++ ..+..+.-+. ....+.+++|+|||++|++++.+ ++|++||+.+..
T Consensus 215 ~~--------------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 215 DN--------------KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp TT--------------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred CC--------------eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 76 4444443321 12348899999999988777654 899999997653
No 148
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.37 E-value=2.3e-10 Score=118.88 Aligned_cols=99 Identities=11% Similarity=0.132 Sum_probs=70.5
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEEcCCCCCCCCCccCCCCceeE--EEEEecc
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ-GHNINIFKIIPGILGTSSACDAGTSYVH--LYRLQRG 377 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~d-Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~--l~~l~rG 377 (701)
+.|.+||+.+++.+..+..+. ...+++|+|||++|++++.+ +..|.+|++.... .... ...+..
T Consensus 108 ~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g-----------~~~~~~~~~~~~- 174 (331)
T 3u4y_A 108 FNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKIDADG-----------VLFDTGQEFISG- 174 (331)
T ss_dssp CEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC-----------CEEEEEEEEECS-
T ss_pred ccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEECCCC-----------cEeecCCccccC-
Confidence 389999999999988887655 45899999999866655544 4438999997530 0011 112211
Q ss_pred CCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCC
Q 005349 378 LTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 414 (701)
Q Consensus 378 ~~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~~g~ 414 (701)
.....+++|+|||++|++++ .+++|++||+.+...
T Consensus 175 --~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 175 --GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp --SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred --CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 22378999999999766554 689999999986544
No 149
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.35 E-value=5e-11 Score=138.64 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=73.7
Q ss_pred CCCeEEEEECCCCcEEEEeecCCC----CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKS----PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~----~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
.+..|.+||+.++++...+..|.. .+.+++|+|||++|++++.+|+ ++||.+... .. +..+
T Consensus 310 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~~~~-------------~~-~~~l 374 (741)
T 2ecf_A 310 KKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGF-QHLYRIDSK-------------GK-AAAL 374 (741)
T ss_dssp SEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSS-CEEEEECSS-------------SC-EEES
T ss_pred CeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCc-cEEEEEcCC-------------CC-eeee
Confidence 457899999999988877776653 4568999999999999999997 789987632 02 3444
Q ss_pred eccCCcccEEEE-EEcCCCCEEEEEe-CCC--cEEEEecCCCCC
Q 005349 375 QRGLTNAVIQDI-SFSDDSNWIMISS-SRG--TSHLFAINPLGG 414 (701)
Q Consensus 375 ~rG~~~a~I~~i-aFSpDg~~lAsgS-~dg--TI~Iwdl~~~g~ 414 (701)
..+ ...|.++ +|||||++|+..+ .++ +++||++...+.
T Consensus 375 ~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 375 THG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp CCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred eec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 332 2347777 5999999886544 455 899999976444
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.32 E-value=2.6e-10 Score=117.67 Aligned_cols=56 Identities=9% Similarity=-0.021 Sum_probs=46.0
Q ss_pred cEEEEEECCCCcEEEEEecCC---CEEEEEec--CCEEEEE--eCCEEEEEECCCCceeEEEe
Q 005349 117 TVVHFYSLRSQSYVHMLKFRS---PIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAIL 172 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s---~V~sV~~s--~~~LaVa--~~~~I~iwDl~t~~~~~tl~ 172 (701)
++|++||+.+++.+.++.+.. .+..++++ ++.+.++ .+++|++||+.+++.+.++.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 789999999999999999876 68899996 4555553 35699999999998777665
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.32 E-value=2e-11 Score=138.53 Aligned_cols=91 Identities=11% Similarity=0.111 Sum_probs=72.3
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG-t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
+.|++||+.+++.. .+..|...+..++|||||++|++++.+| ..|.+||+.++ ... .+ .++.
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~--------------~~~-~~-~~~~ 237 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG--------------SVE-DL-ELPS 237 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC--------------CEE-EC-CCSC
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC--------------cEE-Ec-cCCC
Confidence 46999999988764 7788999999999999999999888887 13899999876 222 22 2322
Q ss_pred cccEEEEE--------EcCCCCEEEEEeCCCcEEEEec
Q 005349 380 NAVIQDIS--------FSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 380 ~a~I~~ia--------FSpDg~~lAsgS~dgTI~Iwdl 409 (701)
..+.+++ |||||+++++++.|++++||++
T Consensus 238 -~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 238 -KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp -SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred -cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 2344455 9999999999999999999999
No 152
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.30 E-value=2.8e-11 Score=140.16 Aligned_cols=52 Identities=4% Similarity=-0.014 Sum_probs=42.1
Q ss_pred CcEEEEEECCCCcEEEEEecCC----CEEEEEec--CCEEEEEeC----------CEEEEEECCCCce
Q 005349 116 PTVVHFYSLRSQSYVHMLKFRS----PIYSVRCS--SRVVAICQA----------AQVHCFDAATLEI 167 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~tL~f~s----~V~sV~~s--~~~LaVa~~----------~~I~iwDl~t~~~ 167 (701)
+++|++||+.++++...+.... .|.+++|+ ++.|+.+.+ ++|++||+.+++.
T Consensus 36 dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 103 (723)
T 1xfd_A 36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP 103 (723)
T ss_dssp SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC
T ss_pred CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce
Confidence 4689999999999988887644 38999997 577777643 7899999998875
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.27 E-value=8.9e-12 Score=137.85 Aligned_cols=108 Identities=8% Similarity=0.166 Sum_probs=85.7
Q ss_pred ccCCCCeEEEEECCCC--------c---EEEEeecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCCCCCCCccC
Q 005349 296 DADNVGMVIVRDIVSK--------N---VIAQFRAHKSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACD 363 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~--------~---~i~~~~~H~~~Is~laFSPd-G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~ 363 (701)
++..|+.|+|||+.++ + .+..+++|..+|.+|+|+|+ +.+||+++.||+ |+|||+.++
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~~~--------- 182 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVTET--------- 182 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEESSS---------
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcCCC---------
Confidence 5678999999998654 2 25667789999999999998 899999999998 899999875
Q ss_pred CCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecCC
Q 005349 364 AGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQPT 421 (701)
Q Consensus 364 ~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~H 421 (701)
..+... .++ ...|.+++|+|||++||+|+.||+|+|||+. ......+..|
T Consensus 183 -----~~~~~~-~~~-~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~ 232 (434)
T 2oit_A 183 -----VKVCAT-LPS-TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP 232 (434)
T ss_dssp -----EEEEEE-ECG-GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCC
T ss_pred -----cceeec-cCC-CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCC
Confidence 343333 232 3469999999999999999999999999997 3223344443
No 154
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.26 E-value=1.6e-09 Score=115.69 Aligned_cols=105 Identities=15% Similarity=0.181 Sum_probs=69.5
Q ss_pred CCeEEEEECC-CCcE--EEEee--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeE-EEE
Q 005349 300 VGMVIVRDIV-SKNV--IAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH-LYR 373 (701)
Q Consensus 300 dG~V~IwDl~-s~~~--i~~~~--~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~-l~~ 373 (701)
++.|++||+. +++. +..+. .|...+..++|+|||++|++++..+..|.+|++... .+ .... ...
T Consensus 166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g---------~~~~~~~~ 235 (365)
T 1jof_A 166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-TH---------MPVYTHHS 235 (365)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-TC---------CEEEEEEE
T ss_pred CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-CC---------cEEEccce
Confidence 4689999998 6654 33444 356779999999999999888865445999987632 00 1111 112
Q ss_pred Ee---ccCCc-c-------cEEEEE-EcCCCCEEEEEeCC-C-----cEEEEecCCCCC
Q 005349 374 LQ---RGLTN-A-------VIQDIS-FSDDSNWIMISSSR-G-----TSHLFAINPLGG 414 (701)
Q Consensus 374 l~---rG~~~-a-------~I~~ia-FSpDg~~lAsgS~d-g-----TI~Iwdl~~~g~ 414 (701)
+. .+... . .+.+++ |||||++|++++.+ + +|.||+++..+.
T Consensus 236 ~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred EEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence 21 11111 1 378999 99999999877643 2 899999975333
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.25 E-value=1.6e-09 Score=125.39 Aligned_cols=97 Identities=16% Similarity=0.116 Sum_probs=68.1
Q ss_pred CCCCeEEEEECC-CCcEEEEeecCCCCeEE-EEEcCCCCEEEEEeCCCc----EEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 298 DNVGMVIVRDIV-SKNVIAQFRAHKSPISA-LCFDPSGILLVTASVQGH----NINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 298 ~~dG~V~IwDl~-s~~~i~~~~~H~~~Is~-laFSPdG~lLaTaS~dGt----~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
..+|.++||++. +++.+..+..|...+.. ++|+|||+.|+.++.+.. .|..||+.++ . +
T Consensus 330 ~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~--------------~-~ 394 (706)
T 2z3z_A 330 RRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG--------------K-T 394 (706)
T ss_dssp CTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC--------------C-C
T ss_pred ccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC--------------C-c
Confidence 345677788765 56778888888888887 899999998776655432 4566666544 1 1
Q ss_pred EEEeccCCcccEEEEEEcCCCCEEEEEeCC----CcEEEEecCCC
Q 005349 372 YRLQRGLTNAVIQDISFSDDSNWIMISSSR----GTSHLFAINPL 412 (701)
Q Consensus 372 ~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d----gTI~Iwdl~~~ 412 (701)
..+. +...+.+++|||||++|+.++.+ +++++||+...
T Consensus 395 ~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 395 KDLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp EESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred eecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 2221 12348899999999999876544 46999999754
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.24 E-value=2.8e-10 Score=138.82 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=79.9
Q ss_pred CCeEE-EEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 300 VGMVI-VRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 300 dG~V~-IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
++.+. +||+.+++.. .+..|...+.+++|||||++||+++.+++ |++||+.++ .....+ .++
T Consensus 357 ~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg--------------~~~~~~-~~~ 419 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETG--------------KPTVIE-RSR 419 (1045)
T ss_dssp TEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTC--------------CEEEEE-ECS
T ss_pred CCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCC--------------ceEEec-cCC
Confidence 45688 8999887654 45588889999999999999999999986 899999876 222222 233
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCC----------cEEEEecCCCCCceeecCCC
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRG----------TSHLFAINPLGGSVNFQPTD 422 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dg----------TI~Iwdl~~~g~~~~~~~H~ 422 (701)
...|.+++|||||++||+++.++ +|++||+... ....+..|.
T Consensus 420 -~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-~~~~l~~~~ 471 (1045)
T 1k32_A 420 -EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-KIFAATTEN 471 (1045)
T ss_dssp -SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-EEEECSCSS
T ss_pred -CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC-cEEEeeCCC
Confidence 23588999999999999988754 8999999764 344555554
No 157
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.22 E-value=2.8e-10 Score=138.79 Aligned_cols=95 Identities=11% Similarity=0.059 Sum_probs=78.9
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC---------cEEEEEEcCCCCCCCCCccCCCCcee
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG---------HNINIFKIIPGILGTSSACDAGTSYV 369 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG---------t~I~Iwdl~~~~~~~~s~~~~~~~~~ 369 (701)
.++.|++||+.+++....+..|...|.+++|||||++||+++.++ ..|++||+.++ .
T Consensus 398 ~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--------------~ 463 (1045)
T 1k32_A 398 DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--------------K 463 (1045)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--------------E
T ss_pred CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC--------------c
Confidence 457899999999998888889999999999999999999988754 35999999876 2
Q ss_pred EEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 370 ~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
+..+. ++ ...+.+++|+|||++|+.++.++...+|+..
T Consensus 464 -~~~l~-~~-~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 464 -IFAAT-TE-NSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp -EEECS-CS-SSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred -EEEee-CC-CcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 34442 22 2348889999999999999999999999875
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.21 E-value=1.7e-09 Score=112.22 Aligned_cols=57 Identities=9% Similarity=0.034 Sum_probs=46.4
Q ss_pred cEEEEEECCCCcEEEEEecCC--CEEEEEec--CCEEEEE--eCCEEEEEECCCCceeEEEec
Q 005349 117 TVVHFYSLRSQSYVHMLKFRS--PIYSVRCS--SRVVAIC--QAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s--~V~sV~~s--~~~LaVa--~~~~I~iwDl~t~~~~~tl~t 173 (701)
++|++||+.+++.++++.... .+..++++ ++.+.++ .+++|++||+.+++....+..
T Consensus 21 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 21 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 789999999999999998876 78889996 4555553 467999999999987777653
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.20 E-value=5.8e-11 Score=137.93 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=78.3
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccC---CEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDG---PVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG---~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
.+++..+.++.+.+||++. ++...++..+.. .|..+++.|+. ..|+++.+...
T Consensus 27 g~~~~~~~d~~i~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~SpDg--------------~~la~~~~~~~--------- 82 (719)
T 1z68_A 27 QEYLHQSADNNIVLYNIET-GQSYTILSNRTMKSVNASNYGLSPDR--------------QFVYLESDYSK--------- 82 (719)
T ss_dssp SEEEEECTTSCEEEEESSS-CCEEEEECHHHHHTTTCSEEEECTTS--------------SEEEEEEEEEE---------
T ss_pred CeEEEEcCCCCEEEEEcCC-CcEEEEEccccccccceeeEEECCCC--------------CeEEEEecCce---------
Confidence 4677777788899999987 567777765543 48888888864 24665553100
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEEeCCEEEEEECCCCcee
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIE 168 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa~~~~I~iwDl~t~~~~ 168 (701)
..+ ...+++|++||+.+++.+........+..++|+ ++.||.+.+++|++||+.+++..
T Consensus 83 ---~~~------------~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~ 143 (719)
T 1z68_A 83 ---LWR------------YSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPF 143 (719)
T ss_dssp ---CSS------------SCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCE
T ss_pred ---eEE------------eecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcE
Confidence 000 001378999999999874323345678899997 57888888999999999988764
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.20 E-value=3e-10 Score=128.82 Aligned_cols=99 Identities=8% Similarity=-0.078 Sum_probs=72.0
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ----GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~d----Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
.+.|||+.++++......+. .+++|||||++||+++.+ ++ |++||+.++ .. ..+. +
T Consensus 133 ~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~-i~~~d~~~g--------------~~-~~l~-~ 192 (582)
T 3o4h_A 133 RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVS-LFTSNLSSG--------------GL-RVFD-S 192 (582)
T ss_dssp CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEE-EEEEETTTC--------------CC-EEEC-C
T ss_pred CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeE-EEEEcCCCC--------------Cc-eEee-c
Confidence 34499999887655444433 789999999999988876 44 899998876 11 2332 2
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCC--cEEEEecCCCCCceeecCCC
Q 005349 378 LTNAVIQDISFSDDSNWIMISSSRG--TSHLFAINPLGGSVNFQPTD 422 (701)
Q Consensus 378 ~~~a~I~~iaFSpDg~~lAsgS~dg--TI~Iwdl~~~g~~~~~~~H~ 422 (701)
+ ...+.+++|||||++|+++..++ +|++||+...... .+..|.
T Consensus 193 ~-~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~ 237 (582)
T 3o4h_A 193 G-EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS 237 (582)
T ss_dssp S-SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC
T ss_pred C-CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC
Confidence 2 23589999999999999888898 8999998764333 444443
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.20 E-value=2.6e-09 Score=114.04 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=54.0
Q ss_pred CeEEEE-EcCCCCEEEEEeCCCc-----EEEEEEcC-CCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC---CC
Q 005349 323 PISALC-FDPSGILLVTASVQGH-----NINIFKII-PGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD---DS 392 (701)
Q Consensus 323 ~Is~la-FSPdG~lLaTaS~dGt-----~I~Iwdl~-~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp---Dg 392 (701)
.+..++ |||||++|++++.+.. .|.||++. ++ ....+..+.... ...+..++|+| ||
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g------------~~~~~~~~~~~~-~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG------------SIEKQLFLSPTP-TSGGHSNAVSPCPWSD 321 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS------------CEEEEEEEEECS-SCCTTCCCEEECTTCT
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC------------CEEEeeeeeecC-CCCcccceecCCCcCC
Confidence 488999 9999999888765443 59999996 33 112211111111 12356789999 89
Q ss_pred CEEEEEeCC-CcEEEEecCCC
Q 005349 393 NWIMISSSR-GTSHLFAINPL 412 (701)
Q Consensus 393 ~~lAsgS~d-gTI~Iwdl~~~ 412 (701)
++|++++.+ ++|+||+++..
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 999999875 89999999764
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.06 E-value=5.9e-10 Score=129.46 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=41.2
Q ss_pred cEEEEEECCCCcEEEEEecCC----CEEEEEec--CCEEEEEe----------CCEEEEEECCCCce
Q 005349 117 TVVHFYSLRSQSYVHMLKFRS----PIYSVRCS--SRVVAICQ----------AAQVHCFDAATLEI 167 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s----~V~sV~~s--~~~LaVa~----------~~~I~iwDl~t~~~ 167 (701)
++|++||+.++++...+.... .|.+++|| ++.|+.+. +++|++||+.+++.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 679999999999888776543 38899997 57777654 47999999998875
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.02 E-value=3.2e-09 Score=124.60 Aligned_cols=111 Identities=12% Similarity=0.083 Sum_probs=74.7
Q ss_pred CcEEEEeccCCeEEEEecCCCCeeEEeeeccCC---EEE--EEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCcccc
Q 005349 18 RRVLLLGYRSGFQVWDVEEADNVHDLVSRYDGP---VSF--MQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQ 92 (701)
Q Consensus 18 ~~vL~~g~~~g~qVwdv~~~~~~~elvs~~dG~---V~~--l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~ 92 (701)
.++|..+ ++.+.+||+.+ ++...++..+... +.+ +.+.|+. ..|++..+...
T Consensus 28 g~~~~~~-~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Spdg--------------~~l~~~~~~~~------- 84 (740)
T 4a5s_A 28 HEYLYKQ-ENNILVFNAEY-GNSSVFLENSTFDEFGHSINDYSISPDG--------------QFILLEYNYVK------- 84 (740)
T ss_dssp SEEEEEE-TTEEEEEETTT-CCEEEEECTTTTTTCCSCCCEEEECTTS--------------SEEEEEEEEEE-------
T ss_pred CcEEEEc-CCcEEEEECCC-CceEEEEechhhhhhcccccceEECCCC--------------CEEEEEECCee-------
Confidence 4677777 77899999987 5677777766432 222 5566643 24555543110
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEEeCCEEEEEECCCCcee
Q 005349 93 DGLATACNGTSANYHDLGNGSSVPTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAICQAAQVHCFDAATLEIE 168 (701)
Q Consensus 93 d~~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa~~~~I~iwDl~t~~~~ 168 (701)
..+ ....+.+.+||++++++.....++..+..++|| ++.||.+.++.|++||+.+++..
T Consensus 85 -----~~r------------~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 85 -----QWR------------HSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY 145 (740)
T ss_dssp -----CSS------------SCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCE
T ss_pred -----eEE------------EccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceE
Confidence 000 011267899999999865533446789999997 57888888999999999988743
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.98 E-value=5.2e-08 Score=104.64 Aligned_cols=96 Identities=10% Similarity=0.127 Sum_probs=67.2
Q ss_pred CCCCeEEEEECCCCc--EEEEeec------CC----CCeEEEEEcCCCCEEEEEeC-C---------CcEEEEEEcCCCC
Q 005349 298 DNVGMVIVRDIVSKN--VIAQFRA------HK----SPISALCFDPSGILLVTASV-Q---------GHNINIFKIIPGI 355 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~--~i~~~~~------H~----~~Is~laFSPdG~lLaTaS~-d---------Gt~I~Iwdl~~~~ 355 (701)
..+|.|.++|+...+ .+..+.- +. .....++|+|||+.|..+.. + ...|.+||+.++
T Consensus 218 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~- 296 (361)
T 2oiz_A 218 SYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK- 296 (361)
T ss_dssp BTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-
T ss_pred eCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC-
Confidence 356889999997653 2233221 11 11112789999887766543 2 125899999887
Q ss_pred CCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 356 LGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 356 ~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
+.+.++.-+. ..+|+|+|||++|++++. ++|.|||..+.
T Consensus 297 -------------~~v~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 297 -------------QRVARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp -------------EEEEEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred -------------cEEEEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 6666765432 789999999999998887 99999999875
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.96 E-value=2.8e-08 Score=105.41 Aligned_cols=106 Identities=11% Similarity=0.039 Sum_probs=63.0
Q ss_pred CeEEEEECCCCcEEEEeecCC--CCeEEEEEcCCCCEEEEEeCC-Cc---EEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 301 GMVIVRDIVSKNVIAQFRAHK--SPISALCFDPSGILLVTASVQ-GH---NINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~--~~Is~laFSPdG~lLaTaS~d-Gt---~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
..|.++|+..+.. ..+..+. ..+..++|||||+.|+..+.+ +. .|.+||+.++ ....+..+
T Consensus 216 ~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g------------~~~~l~~~ 282 (388)
T 3pe7_A 216 ARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL------------ENRQLTSM 282 (388)
T ss_dssp CSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC------------CEEEEEEE
T ss_pred ceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC------------ceEEEEcC
Confidence 3577788776544 4444444 358889999999988665542 22 2899999876 22344443
Q ss_pred eccCCcc--cEEEEEEcCCCCEEEEE---------eCCCcEEEEecCCCCCceeecCC
Q 005349 375 QRGLTNA--VIQDISFSDDSNWIMIS---------SSRGTSHLFAINPLGGSVNFQPT 421 (701)
Q Consensus 375 ~rG~~~a--~I~~iaFSpDg~~lAsg---------S~dgTI~Iwdl~~~g~~~~~~~H 421 (701)
. +.... ....++|||||++|+.. ..+..|.+||+... ....+..|
T Consensus 283 ~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~l~~~ 338 (388)
T 3pe7_A 283 P-ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG-TQHRVARH 338 (388)
T ss_dssp C-CEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT-EEEEEEEC
T ss_pred C-CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC-ceEEeccc
Confidence 2 21000 01124799999999865 44668999998753 33344433
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.95 E-value=9.5e-07 Score=89.94 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=69.7
Q ss_pred CCeEEEEECCCCcEEEEeecC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 300 VGMVIVRDIVSKNVIAQFRAH--KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H--~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
++.|++||.. ++.+..+..+ ...+..|+|+|+|+++++...++..|.+||.. + ..+..+..+
T Consensus 184 ~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g--------------~~~~~~~~~ 247 (286)
T 1q7f_A 184 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G--------------QLISALESK 247 (286)
T ss_dssp GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S--------------CEEEEEEES
T ss_pred CCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C--------------CEEEEEccc
Confidence 5689999974 5566677544 36789999999999999887775249999953 3 334444332
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 378 ~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
.....+.+++|+|||+++++ +.|++|+||++..
T Consensus 248 ~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 248 VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred CCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 22234789999999987777 6799999999865
No 167
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.91 E-value=8.4e-07 Score=93.59 Aligned_cols=94 Identities=10% Similarity=-0.001 Sum_probs=66.6
Q ss_pred CCeEEEEECCCCcEEEEeecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 300 VGMVIVRDIVSKNVIAQFRAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H-~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
.+.|.++|..+++.+..+... ......|+|+|||++|..+.. + |.+||+.++.... .. .+..+
T Consensus 202 ~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~-v~~~d~~t~~~~~----------~~--~~~~~- 265 (328)
T 3dsm_A 202 APSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D-IWRMPVEADRVPV----------RP--FLEFR- 265 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S-EEEEETTCSSCCS----------SC--SBCCC-
T ss_pred CceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E-EEEEECCCCceee----------ee--eecCC-
Confidence 478999999999888777643 236789999999999888765 5 8899987751100 00 00000
Q ss_pred CcccEEEEEEcC-CCCEEEEE----eCCCcEEEEecC
Q 005349 379 TNAVIQDISFSD-DSNWIMIS----SSRGTSHLFAIN 410 (701)
Q Consensus 379 ~~a~I~~iaFSp-Dg~~lAsg----S~dgTI~Iwdl~ 410 (701)
......|+++| +++..++. ..+++|.+||..
T Consensus 266 -~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 266 -DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp -SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred -CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 12478999999 55555665 678999999986
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.89 E-value=2.5e-08 Score=116.98 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=37.7
Q ss_pred cEEEEEECCCCcEEEEEecCC------CEEEEEec--CCEEEEEeC----------CEEEEEECCCCce
Q 005349 117 TVVHFYSLRSQSYVHMLKFRS------PIYSVRCS--SRVVAICQA----------AQVHCFDAATLEI 167 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s------~V~sV~~s--~~~LaVa~~----------~~I~iwDl~t~~~ 167 (701)
++|++||+.+|++...+.... ...++.+| ++.|+.+.+ +.+++||+.+++.
T Consensus 36 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~ 104 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL 104 (740)
T ss_dssp TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcE
Confidence 679999999999887776532 22346676 577777554 5778999999874
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.86 E-value=1.1e-07 Score=109.14 Aligned_cols=104 Identities=14% Similarity=0.197 Sum_probs=70.5
Q ss_pred CeEEEEECC-CC---cEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcC--CCCCCCCCccCCCCceeEEEEE
Q 005349 301 GMVIVRDIV-SK---NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII--PGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 301 G~V~IwDl~-s~---~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~--~~~~~~~s~~~~~~~~~~l~~l 374 (701)
..|.+||+. ++ +.......|...+..++|+|||+++++++.+|+ ++||.+. ++ . +..+
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~-~~l~~~~~~~~--------------~-~~~l 280 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW-WNLHRVDPATG--------------A-ATQL 280 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS-CEEEEECTTTC--------------C-EEES
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC-eEEEEEECCCC--------------c-eeec
Confidence 479999999 56 444444567789999999999998888888875 4555543 33 1 1122
Q ss_pred eccCCcc-------cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCc-eeecCC
Q 005349 375 QRGLTNA-------VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGS-VNFQPT 421 (701)
Q Consensus 375 ~rG~~~a-------~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~-~~~~~H 421 (701)
..+.... .+.+++|+||++++++++. ++++||.++..++. ..+..|
T Consensus 281 ~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~ 334 (662)
T 3azo_A 281 CRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGP 334 (662)
T ss_dssp SCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSS
T ss_pred ccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCC
Confidence 1111110 1567999999999999999 99999977654333 344444
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.83 E-value=8.5e-08 Score=101.39 Aligned_cols=103 Identities=12% Similarity=0.145 Sum_probs=63.7
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcC-CCCEEEEEeC---------------CCcEEEEEEcCCCCCCCCCccCC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASV---------------QGHNINIFKIIPGILGTSSACDA 364 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~---------------dGt~I~Iwdl~~~~~~~~s~~~~ 364 (701)
+.|.+||+.+++....... . .+. ++|+| ||++|++++. ....|.+||+..+
T Consensus 264 ~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~---------- 330 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK---------- 330 (396)
T ss_dssp EEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT----------
T ss_pred ceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC----------
Confidence 5699999988865432221 1 233 89999 9999988652 1234899998765
Q ss_pred CCceeEEEEEeccCCc---------ccEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCCCceeecCC
Q 005349 365 GTSYVHLYRLQRGLTN---------AVIQDISFSDDSNWIMISSS-RGTSHLFAINPLGGSVNFQPT 421 (701)
Q Consensus 365 ~~~~~~l~~l~rG~~~---------a~I~~iaFSpDg~~lAsgS~-dgTI~Iwdl~~~g~~~~~~~H 421 (701)
....+.. .... ..+..++|+|||++|+.++. +++..||.++..++...+..|
T Consensus 331 --~~~~l~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~~~ 392 (396)
T 3c5m_A 331 --SAQKLCK---HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLEHH 392 (396)
T ss_dssp --BCCEEEE---CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-----
T ss_pred --ceEEccC---CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccccc
Confidence 1122211 1110 01456899999999987775 677888888766666655433
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.80 E-value=3.4e-07 Score=96.94 Aligned_cols=99 Identities=6% Similarity=-0.006 Sum_probs=67.7
Q ss_pred CCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCC----c-EEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQG----H-NINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dG----t-~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
..++.|.+||+.+++. ..+..+...+..++||| ||+.||.++.++ . .|.++|+..+ ..
T Consensus 165 ~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~---------------~~ 228 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT---------------NM 228 (388)
T ss_dssp CCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC---------------CC
T ss_pred CCcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC---------------ce
Confidence 3457899999999865 44556667899999999 999999887643 1 2666666543 11
Q ss_pred EEEeccCCcccEEEEEEcCCCCEEEEEeCC-C----cEEEEecCCC
Q 005349 372 YRLQRGLTNAVIQDISFSDDSNWIMISSSR-G----TSHLFAINPL 412 (701)
Q Consensus 372 ~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d-g----TI~Iwdl~~~ 412 (701)
..+..+.....+..++|||||++|+..+.+ + +|++||+...
T Consensus 229 ~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 229 RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 223222211247789999999988765542 2 3999998754
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.78 E-value=1.3e-06 Score=91.81 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=72.9
Q ss_pred CCCCeEEEEECCCCcEEEEee--cCCCCeEEEEEcCCCCEEEEE-------eCCCcEEEEEEcCCCCCCCCCccCCCCce
Q 005349 298 DNVGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTA-------SVQGHNINIFKIIPGILGTSSACDAGTSY 368 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~~~--~H~~~Is~laFSPdG~lLaTa-------S~dGt~I~Iwdl~~~~~~~~s~~~~~~~~ 368 (701)
..++.|++||..+++.+..+. .+...+.+++|+| |.++++. +.+.+ |++||..++
T Consensus 215 ~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~-v~~~~~~~g-------------- 278 (329)
T 3fvz_A 215 RENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQ-GFVMNFSSG-------------- 278 (329)
T ss_dssp TTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCC-EEEEETTTC--------------
T ss_pred CCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcE-EEEEEcCCC--------------
Confidence 345789999999899988885 5667899999999 4444443 33335 899998877
Q ss_pred eEEEEEeccC-CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 369 VHLYRLQRGL-TNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 369 ~~l~~l~rG~-~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
..+..+..+. ......+|+|+|||+.+++.+.+++|++|++..
T Consensus 279 ~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 279 EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 4555553111 122389999999998889999999999999864
No 173
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.77 E-value=1.1e-06 Score=92.72 Aligned_cols=177 Identities=7% Similarity=-0.007 Sum_probs=118.3
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEEE-eCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCccccee
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAIC-QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGPL 193 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaVa-~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~pi 193 (701)
++|.+||.+|++.+.++........|+++ +++.++. .+++|.+||+.+++...++...... +. .
T Consensus 64 ~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~-~~------------~ 130 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD-ME------------S 130 (328)
T ss_dssp TEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC-TT------------T
T ss_pred CEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc-cc------------C
Confidence 67999999999999999766678888883 4444444 5889999999999877666532100 00 0
Q ss_pred eeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCCC
Q 005349 194 AVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPDS 273 (701)
Q Consensus 194 Als~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~~ 273 (701)
-.|.-|++.. +.
T Consensus 131 -~~p~~i~~~~----------------------------~~--------------------------------------- 142 (328)
T 3dsm_A 131 -GSTEQMVQYG----------------------------KY--------------------------------------- 142 (328)
T ss_dssp -CBCCCEEEET----------------------------TE---------------------------------------
T ss_pred -CCcceEEEEC----------------------------CE---------------------------------------
Confidence 0001111110 00
Q ss_pred CCccccccCCCCCCCccccccccc-CCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCC----------
Q 005349 274 QNSLQSAIPGGKSNGTVNGHFPDA-DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQ---------- 342 (701)
Q Consensus 274 ~~s~~~a~~~~~~~g~~~~~~~~~-~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~d---------- 342 (701)
.++.. ..++.|.++|+.+++.+..+.... ....++|+|||++++++..+
T Consensus 143 -------------------lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~ 202 (328)
T 3dsm_A 143 -------------------VYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEA 202 (328)
T ss_dssp -------------------EEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCC
T ss_pred -------------------EEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCC
Confidence 00011 135789999999999888887544 34679999999988887654
Q ss_pred CcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 343 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 343 Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
++ |.+||..++ ..+.++.-.. ......++|+||+++|.++.. +|.+||+.+.
T Consensus 203 ~~-v~~id~~t~--------------~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~ 254 (328)
T 3dsm_A 203 PS-LYRIDAETF--------------TVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEAD 254 (328)
T ss_dssp CE-EEEEETTTT--------------EEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCS
T ss_pred ce-EEEEECCCC--------------eEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCC
Confidence 44 899998876 3333332211 123789999999999988765 8888888643
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.72 E-value=4.6e-06 Score=86.89 Aligned_cols=96 Identities=15% Similarity=0.240 Sum_probs=68.9
Q ss_pred CCeEEEEECCCCcEEEEeecCCCCeEE-EEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSPISA-LCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~Is~-laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
...|.+|| +++....+..|...+.. ++|+ || ++++++.+|+ ++|| +.++ .. ..+..+
T Consensus 243 ~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~-~~l~-~~~g--------------~~-~~~~~~- 300 (347)
T 2gop_A 243 HNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS-VNLY-IWDG--------------EI-KPIAKG- 300 (347)
T ss_dssp SCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE-EEEE-EESS--------------SE-EEEECS-
T ss_pred cceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc-EEEE-EcCC--------------ce-EEEecC-
Confidence 35788888 56655555577788886 9999 99 9999999986 8999 8743 12 222222
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcE-EEEecCCCCCceeecCCC
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRGTS-HLFAINPLGGSVNFQPTD 422 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dgTI-~Iwdl~~~g~~~~~~~H~ 422 (701)
...|.+++|+| +++++++.+++. +||.++ +....+..|+
T Consensus 301 -~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~--g~~~~lt~~n 340 (347)
T 2gop_A 301 -RHWIMGFDVDE--IVVYLKETATRLRELFTWD--GEEKQLTDYN 340 (347)
T ss_dssp -SSEEEEEEESS--SEEEEEECSSSCCEEEEES--SSEEECCCTT
T ss_pred -CCeEEeeeeeC--cEEEEEcCCCChHHheEeC--CcEEEecccc
Confidence 34599999999 788888887776 899887 4444555554
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.70 E-value=1.4e-06 Score=90.79 Aligned_cols=90 Identities=9% Similarity=0.097 Sum_probs=57.8
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC-------cEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-------HNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG-------t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
.|.++| +++ +..+..+ ..+..+ ||||++|+.++.++ ..|.+|| ++ . ...+
T Consensus 201 ~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~--------------~-~~~l 257 (347)
T 2gop_A 201 DIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK--------------E-VMGI 257 (347)
T ss_dssp EEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS--------------C-EEES
T ss_pred cEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC--------------c-eEec
Confidence 456666 444 3444445 556554 99999998887553 2466777 33 1 1233
Q ss_pred eccCCcccEEE-EEEcCCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 005349 375 QRGLTNAVIQD-ISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 375 ~rG~~~a~I~~-iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~ 419 (701)
..++ ...|.+ ++|+ |+ ++++++.+++++|| +. .+....+.
T Consensus 258 ~~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~-~g~~~~~~ 298 (347)
T 2gop_A 258 LDEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW-DGEIKPIA 298 (347)
T ss_dssp STTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EE-SSSEEEEE
T ss_pred cccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec-CCceEEEe
Confidence 2232 234776 9999 99 99999999999999 98 44444443
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.69 E-value=4.7e-07 Score=95.66 Aligned_cols=97 Identities=7% Similarity=-0.032 Sum_probs=67.8
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCc-----EEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGH-----NINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt-----~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
.+..|.+||+.+++....+ .+...+..++|+| ||+.|+.++.++. .|.+||+..+ .+.
T Consensus 166 ~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~---------------~~~ 229 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS---------------NVR 229 (396)
T ss_dssp CCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC---------------CCE
T ss_pred CcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC---------------cee
Confidence 4568999999988765444 5677899999999 8998887765432 3777887543 112
Q ss_pred EEeccCCcccEEEEEEcCCCCEEEEEeCC-----CcEEEEecCC
Q 005349 373 RLQRGLTNAVIQDISFSDDSNWIMISSSR-----GTSHLFAINP 411 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSpDg~~lAsgS~d-----gTI~Iwdl~~ 411 (701)
.+..+.....+..++|||||++|+.++.+ ++|++||+..
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 22221112248889999999998887654 4599999865
No 177
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.66 E-value=1.2e-05 Score=82.27 Aligned_cols=89 Identities=12% Similarity=0.205 Sum_probs=60.9
Q ss_pred CCCeEEEEECC-CCcE---EEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 299 NVGMVIVRDIV-SKNV---IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 299 ~dG~V~IwDl~-s~~~---i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
.++.|.+||+. +++. ...+..+...+..|+|+++|+++++. ++. |.+||.. + ..+..+
T Consensus 191 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~~~-g--------------~~~~~~ 252 (296)
T 3e5z_A 191 GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLTPD-G--------------DELGRV 252 (296)
T ss_dssp TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEECTT-S--------------CEEEEE
T ss_pred CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEECCC-C--------------CEEEEE
Confidence 34678888886 4444 33444455567789999999988877 554 8999975 3 344444
Q ss_pred eccCCcccEEEEEE-cCCCCEEEEEeCCCcEEEEecCC
Q 005349 375 QRGLTNAVIQDISF-SDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 375 ~rG~~~a~I~~iaF-SpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
... . . +.+++| +||++.|.+++.+ .||.++.
T Consensus 253 ~~~-~-~-~~~~~f~~~d~~~L~v~t~~---~l~~~~~ 284 (296)
T 3e5z_A 253 LTP-Q-T-TSNLCFGGPEGRTLYMTVST---EFWSIET 284 (296)
T ss_dssp ECS-S-C-CCEEEEESTTSCEEEEEETT---EEEEEEC
T ss_pred ECC-C-C-ceeEEEECCCCCEEEEEcCC---eEEEEEc
Confidence 322 2 2 789999 6899999999887 3555554
No 178
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.62 E-value=2e-05 Score=81.45 Aligned_cols=103 Identities=10% Similarity=-0.001 Sum_probs=77.1
Q ss_pred cCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r 376 (701)
...++.|.+||.. ++.+.++..+. ...++.+.++|.+|++++.+++ |..||..++ ..++++.+
T Consensus 142 ~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG--------------~~~w~~~~ 204 (276)
T 3no2_A 142 LFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHC-FVQLNLESN--------------RIVRRVNA 204 (276)
T ss_dssp ETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBTTSE-EEEECTTTC--------------CEEEEEEG
T ss_pred ecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCCCCe-EEEEeCcCC--------------cEEEEecC
Confidence 3456899999998 99999998764 4456788999999998887765 899998877 67778754
Q ss_pred cC----CcccEEEEEEcCCCCEEEEEeCC--------CcEEEEecCCCCCce
Q 005349 377 GL----TNAVIQDISFSDDSNWIMISSSR--------GTSHLFAINPLGGSV 416 (701)
Q Consensus 377 G~----~~a~I~~iaFSpDg~~lAsgS~d--------gTI~Iwdl~~~g~~~ 416 (701)
.. ....+..++..++|+.+++.+.. +..+++.+.+.|..+
T Consensus 205 ~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~ 256 (276)
T 3no2_A 205 NDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVV 256 (276)
T ss_dssp GGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEE
T ss_pred CCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEE
Confidence 21 12337899999999999887521 355788987755443
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.61 E-value=1.4e-05 Score=91.48 Aligned_cols=183 Identities=9% Similarity=0.008 Sum_probs=123.0
Q ss_pred CcEEEEEECCCCcEEEEEecCCCEEEEEec--CCEEEE-EeCCEEEEEECC--CCceeEEEecCCCccCCCCCCCCCccc
Q 005349 116 PTVVHFYSLRSQSYVHMLKFRSPIYSVRCS--SRVVAI-CQAAQVHCFDAA--TLEIEYAILTNPIVMGHPSAGGIGIGY 190 (701)
Q Consensus 116 ~~tVriWdl~tg~~v~tL~f~s~V~sV~~s--~~~LaV-a~~~~I~iwDl~--t~~~~~tl~t~~~~~~~~~~~~~~~~~ 190 (701)
.++|.++|+.|++.+.++.....+..+.++ +++|.| ..++.|.+||+. +++.+.++....
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~--------------- 240 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--------------- 240 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---------------
T ss_pred CCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---------------
Confidence 378999999999999999987778899997 566665 557799999996 787776665321
Q ss_pred ceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccccccc
Q 005349 191 GPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFL 270 (701)
Q Consensus 191 ~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~ 270 (701)
+|+-++++..+. | +|+.+
T Consensus 241 -----~P~~ia~s~~~~---------p--------------DGk~l---------------------------------- 258 (567)
T 1qks_A 241 -----EARSIETSKMEG---------W--------------EDKYA---------------------------------- 258 (567)
T ss_dssp -----EEEEEEECCSTT---------C--------------TTTEE----------------------------------
T ss_pred -----CCceeEEccccC---------C--------------CCCEE----------------------------------
Confidence 224455531000 0 11111
Q ss_pred CCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeec----------CCC-CeEEEEEcCCCCEEEEE
Q 005349 271 PDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRA----------HKS-PISALCFDPSGILLVTA 339 (701)
Q Consensus 271 p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~----------H~~-~Is~laFSPdG~lLaTa 339 (701)
++....++.|.|+|..+.+++..+.. |.. .+..+.+++++..++..
T Consensus 259 -----------------------~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 259 -----------------------IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp -----------------------EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred -----------------------EEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 01122357899999999999888763 222 68899999987765555
Q ss_pred eCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCC
Q 005349 340 SVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLG 413 (701)
Q Consensus 340 S~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~~g 413 (701)
-.+...|.++|..+. ....+..+..+ ....++.|+|||++|.+++ .+++|.++|+.+..
T Consensus 316 ~~~~g~v~~vd~~~~------------~~~~v~~i~~~---~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 316 VKETGKILLVDYTDL------------NNLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp ETTTTEEEEEETTCS------------SEEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred ecCCCeEEEEecCCC------------ccceeeeeecc---ccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 444334888887654 11222333222 2367899999999987766 57899999998653
No 180
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.59 E-value=1.5e-06 Score=95.01 Aligned_cols=82 Identities=9% Similarity=0.118 Sum_probs=60.6
Q ss_pred CCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec-
Q 005349 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR- 376 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r- 376 (701)
..+|.|.+||+.++.... +...|+|+||||+| ++.+..||+ |++|+.... ......++-+
T Consensus 143 ~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~-i~~~~~~~~------------~~~~k~~I~~P 203 (388)
T 1xip_A 143 NSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS-FQSFAWRNG------------EMEKQFEFSLP 203 (388)
T ss_dssp ETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC-EEEEEEETT------------EEEEEEEECCC
T ss_pred ECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc-EEEEcCCCc------------cccccceecCC
Confidence 467999999999887643 44689999999999 677889998 899987654 1110334421
Q ss_pred ---c---CCcccEEEEEEcCCCCEEEEE
Q 005349 377 ---G---LTNAVIQDISFSDDSNWIMIS 398 (701)
Q Consensus 377 ---G---~~~a~I~~iaFSpDg~~lAsg 398 (701)
+ .+...|.+|+|.+++++|++=
T Consensus 204 p~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 204 SELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cccccccCCCeeEEEEEEecCCeEEEEE
Confidence 1 023569999999999999873
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.59 E-value=5.3e-05 Score=78.55 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=55.3
Q ss_pred CCeEEEEECCC-CcEEE--------EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeE
Q 005349 300 VGMVIVRDIVS-KNVIA--------QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (701)
Q Consensus 300 dG~V~IwDl~s-~~~i~--------~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~ 370 (701)
++.|.+||+.+ +..+. .+.++ ..+..|+|+++|+++++...++. |.+||.. + ..
T Consensus 203 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~~-g--------------~~ 265 (333)
T 2dg1_A 203 ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGR-VLVFNKR-G--------------YP 265 (333)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTE-EEEECTT-S--------------CE
T ss_pred CCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCE-EEEECCC-C--------------CE
Confidence 35677777753 22221 22233 36788999999999988877776 8999873 3 23
Q ss_pred EEEEeccCC----cccEEEEEEcCCCCEEEEEeCCC
Q 005349 371 LYRLQRGLT----NAVIQDISFSDDSNWIMISSSRG 402 (701)
Q Consensus 371 l~~l~rG~~----~a~I~~iaFSpDg~~lAsgS~dg 402 (701)
+..+..... ...+.+++|+||++.|..++.++
T Consensus 266 ~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 266 IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 334322110 01478999999998887776664
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.58 E-value=5.2e-05 Score=86.77 Aligned_cols=188 Identities=16% Similarity=0.137 Sum_probs=113.7
Q ss_pred cEEEEEECC--CCcEEEEEecCCCEEEEEec------CCEEEEE--eCCEEEEEECCCCceeEEEecCCCccCCCCCCCC
Q 005349 117 TVVHFYSLR--SQSYVHMLKFRSPIYSVRCS------SRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGI 186 (701)
Q Consensus 117 ~tVriWdl~--tg~~v~tL~f~s~V~sV~~s------~~~LaVa--~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~ 186 (701)
+.|.+||+. +++.+.++......+.|+++ ++++.|+ ..++|.|||..|++.+.++.+.......
T Consensus 218 g~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~------ 291 (567)
T 1qks_A 218 GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE------ 291 (567)
T ss_dssp SEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT------
T ss_pred CeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc------
Confidence 579999996 99999999876677889997 4666663 5689999999999988887653210000
Q ss_pred CcccceeeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceeccccc
Q 005349 187 GIGYGPLAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYC 266 (701)
Q Consensus 187 ~~~~~piAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~ 266 (701)
..+ ...+|..+... + +. +.
T Consensus 292 -~~~---~p~~rva~i~~-----s------~~--------------~~-------------------------------- 310 (567)
T 1qks_A 292 -QEY---HPEPRVAAILA-----S------HY--------------RP-------------------------------- 310 (567)
T ss_dssp -CCE---ESCCCEEEEEE-----C------SS--------------SS--------------------------------
T ss_pred -ccc---cCCCceEEEEE-----c------CC--------------CC--------------------------------
Confidence 000 00000000000 0 00 00
Q ss_pred ccccCCCCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEE--EEeecCCCCeEEEEEcCCCCEEEEEeCCCc
Q 005349 267 SEFLPDSQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVI--AQFRAHKSPISALCFDPSGILLVTASVQGH 344 (701)
Q Consensus 267 ~~~~p~~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i--~~~~~H~~~Is~laFSPdG~lLaTaS~dGt 344 (701)
..++.....|.|.++|....+.+ ..+. .......+.|+|||++|+++.....
T Consensus 311 -------------------------~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn 364 (567)
T 1qks_A 311 -------------------------EFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARN 364 (567)
T ss_dssp -------------------------EEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGT
T ss_pred -------------------------EEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCC
Confidence 00011235688999998765432 2332 2335667899999999888776555
Q ss_pred EEEEEEcCCCCCCCCCccCCCCceeEEEEEec-cCCcccEEEEE-EcCCCCEEEEEe--CCCcEEEEecCC
Q 005349 345 NINIFKIIPGILGTSSACDAGTSYVHLYRLQR-GLTNAVIQDIS-FSDDSNWIMISS--SRGTSHLFAINP 411 (701)
Q Consensus 345 ~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r-G~~~a~I~~ia-FSpDg~~lAsgS--~dgTI~Iwdl~~ 411 (701)
.|.++|+.++ +.+..+.- |..++.-..+. |+|++..+.+.+ .+++|.|+|..+
T Consensus 365 ~V~ViD~~t~--------------kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 365 KLVVIDTKEG--------------KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEEETTTT--------------EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred eEEEEECCCC--------------cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 6999999987 44444443 32222111222 588866554443 468999999986
No 183
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.55 E-value=1.4e-05 Score=81.17 Aligned_cols=92 Identities=13% Similarity=0.221 Sum_probs=68.2
Q ss_pred CCeEEEEECCCCcEEEEee--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec-
Q 005349 300 VGMVIVRDIVSKNVIAQFR--AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR- 376 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~--~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r- 376 (701)
++.|.+||.. ++.+..+. .+...+..|+|+|+|+++++.+.++. |++||... ..+..+..
T Consensus 141 ~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~g---------------~~~~~~~~~ 203 (286)
T 1q7f_A 141 VMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC-VKVFNYEG---------------QYLRQIGGE 203 (286)
T ss_dssp TTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE-EEEEETTC---------------CEEEEESCT
T ss_pred CCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE-EEEEcCCC---------------CEEEEEccC
Confidence 4678889864 55566664 45567899999999998888777765 89999743 23444421
Q ss_pred cCCcccEEEEEEcCCCCEEEEEeCCC-cEEEEec
Q 005349 377 GLTNAVIQDISFSDDSNWIMISSSRG-TSHLFAI 409 (701)
Q Consensus 377 G~~~a~I~~iaFSpDg~~lAsgS~dg-TI~Iwdl 409 (701)
|. ...+.+|+|++||+++++...++ +|.+|+.
T Consensus 204 g~-~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 204 GI-TNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp TT-SCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred Cc-cCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 21 13488999999999999888886 9999985
No 184
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.52 E-value=5.9e-05 Score=77.05 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=66.5
Q ss_pred CCeEEEEECC-CCc-----EEEEeecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 300 VGMVIVRDIV-SKN-----VIAQFRAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 300 dG~V~IwDl~-s~~-----~i~~~~~H~-~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
++.|.+||+. +++ ....+..+. ..+..|+|+++|.++++...++. |.+||..++ ..+.
T Consensus 197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~-i~~~d~~~g--------------~~~~ 261 (314)
T 1pjx_A 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH-IEVFGPDGG--------------QPKM 261 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE-EEEECTTCB--------------SCSE
T ss_pred CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE-EEEEcCCCC--------------cEeE
Confidence 4677888765 343 334455554 56788999999999998877765 899998654 1112
Q ss_pred EEeccCCcccEEEEEEcCCCCEEEE-EeCCCcEEEEecCCCC
Q 005349 373 RLQRGLTNAVIQDISFSDDSNWIMI-SSSRGTSHLFAINPLG 413 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFSpDg~~lAs-gS~dgTI~Iwdl~~~g 413 (701)
.+.- ....+.+++|++||++|.+ ...++.|.+|++...|
T Consensus 262 ~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 262 RIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 2221 1235899999999996554 4556899999987643
No 185
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.52 E-value=5.5e-06 Score=85.70 Aligned_cols=171 Identities=8% Similarity=0.064 Sum_probs=115.5
Q ss_pred cEEEEEECCCCcEEEEEecCC--CEEEEEec--CCEEEEEeCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLKFRS--PIYSVRCS--SRVVAICQAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s--~V~sV~~s--~~~LaVa~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
+.|.+||.+||+.+.++.... .+.++.+. +++|+ +.++.|++||. +++.+.++..... . ....
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~---~--------~~~~ 81 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAG---C--------EMQT 81 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTT---C--------EEEE
T ss_pred CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCC---c--------cccc
Confidence 789999999999999998754 67888884 57777 67889999999 8998888765210 0 0000
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
. +.. .+|.++
T Consensus 82 ~-------~~~---------------------------~dG~~l------------------------------------ 91 (276)
T 3no2_A 82 A-------RIL---------------------------PDGNAL------------------------------------ 91 (276)
T ss_dssp E-------EEC---------------------------TTSCEE------------------------------------
T ss_pred c-------EEC---------------------------CCCCEE------------------------------------
Confidence 0 000 011111
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEee------cCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFR------AHKSPISALCFDPSGILLVTASVQGHNI 346 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~------~H~~~Is~laFSPdG~lLaTaS~dGt~I 346 (701)
+......+.|..+|. +++.+..+. .+......++++++|.+|++.+.+++ |
T Consensus 92 ---------------------v~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~-v 148 (276)
T 3no2_A 92 ---------------------VAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE-V 148 (276)
T ss_dssp ---------------------EEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE-E
T ss_pred ---------------------EEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE-E
Confidence 000111344555554 455555544 12124455689999999999998886 8
Q ss_pred EEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 347 NIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 347 ~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
.+||.. + +.++++.++. ...++.+.++|+.+++++.+++|..||..+
T Consensus 149 ~~~d~~-G--------------~~~w~~~~~~---~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t 195 (276)
T 3no2_A 149 REIAPN-G--------------QLLNSVKLSG---TPFSSAFLDNGDCLVACGDAHCFVQLNLES 195 (276)
T ss_dssp EEECTT-S--------------CEEEEEECSS---CCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred EEECCC-C--------------CEEEEEECCC---CccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence 999987 7 6778876542 356788999999999999988888888765
No 186
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.52 E-value=2.9e-06 Score=89.16 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=69.4
Q ss_pred CCCeEEEEECCCCcEEEEeecC----------CCCeEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCc
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAH----------KSPISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTS 367 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H----------~~~Is~laFSPd-G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~ 367 (701)
.++.|++|| .+++.+..+... -.....|+|+|+ |.++++...+++ |++||..++
T Consensus 164 ~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G------------- 228 (329)
T 3fvz_A 164 CNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDTK------------- 228 (329)
T ss_dssp SCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTTC-------------
T ss_pred CCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCCC-------------
Confidence 357788888 556677766432 234789999999 777777766665 999998866
Q ss_pred eeEEEEEeccCCcccEEEEEEcC------CCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 368 YVHLYRLQRGLTNAVIQDISFSD------DSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 368 ~~~l~~l~rG~~~a~I~~iaFSp------Dg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
..+..+........+.+++|+| +|+..++.+.+.+|++|++........+
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 229 -EFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp -CEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred -cEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 4555553222233588999999 4444444445569999998765433333
No 187
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.51 E-value=5.1e-06 Score=95.08 Aligned_cols=97 Identities=11% Similarity=0.032 Sum_probs=58.3
Q ss_pred eEEEEECCCCcEEEEeecCCCC--------eEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSP--------ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~--------Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
.|.+||+.+++....+..|... +.+++|+|+|+++++++. |+ ++||.+... ...+..
T Consensus 266 ~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~d~~-------------~~~~~~ 330 (662)
T 3azo_A 266 NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA-AVLGILDPE-------------SGELVD 330 (662)
T ss_dssp EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS-CEEEEEETT-------------TTEEEE
T ss_pred EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc-cEEEEEECC-------------CCcEEE
Confidence 5777777666654433333222 567999999999999998 87 799955321 012344
Q ss_pred EeccCCcccEEEE-EEcCCCCEEEEEeCCCcEEEEecCCCCCc
Q 005349 374 LQRGLTNAVIQDI-SFSDDSNWIMISSSRGTSHLFAINPLGGS 415 (701)
Q Consensus 374 l~rG~~~a~I~~i-aFSpDg~~lAsgS~dgTI~Iwdl~~~g~~ 415 (701)
+.. + ...+.++ +++.+.-++++++.+....||.++..++.
T Consensus 331 l~~-~-~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 331 AAG-P-WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp CCS-S-CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ecC-C-CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 432 2 2346666 55444444556666766677766543333
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.46 E-value=3.7e-05 Score=89.52 Aligned_cols=98 Identities=11% Similarity=0.025 Sum_probs=68.4
Q ss_pred CCeEEEEECCCCc--EEEEeecCCC--CeEEEEEcCCCCEEEEEeCCCcE-EEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 300 VGMVIVRDIVSKN--VIAQFRAHKS--PISALCFDPSGILLVTASVQGHN-INIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 300 dG~V~IwDl~s~~--~i~~~~~H~~--~Is~laFSPdG~lLaTaS~dGt~-I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
.+.|.+||+.++. ....+..|.. .|..++|++++.+++++..+|.. |.+||+.++ ..+..+
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g--------------~~~~~l 375 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG--------------ALLKIF 375 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC--------------CEEEEE
T ss_pred CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC--------------CEEEec
Confidence 4679999998764 2345555544 68889999999999999999852 556666554 334444
Q ss_pred eccCCcccEEEEEEcCCCCEEEEE-e---CCCcEEEEecCCCC
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMIS-S---SRGTSHLFAINPLG 413 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsg-S---~dgTI~Iwdl~~~g 413 (701)
.- . ...|..++|+||++.|+.. + ..+++.+||+.+..
T Consensus 376 ~~-~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 376 PL-E-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CC-C-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CC-C-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 32 2 3458899999999877643 2 24689999997643
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.40 E-value=3.5e-05 Score=77.08 Aligned_cols=95 Identities=11% Similarity=0.021 Sum_probs=69.1
Q ss_pred CCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
++.|.+||............+...+..|+++++|.++++...++. |.+||.... ........+.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~--------------~~~~~~~~~~- 233 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGST--------------TSTVLPFTGL- 233 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCS--------------CCEECCCCSC-
T ss_pred CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCC--------------cceeeccCCC-
Confidence 467888888776654433344467899999999998888777766 899987543 1111111111
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
..+.+|+|++||+.+++.+.+++|++|++..
T Consensus 234 -~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 234 -NTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp -SCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred -CCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence 2489999999999999999999999999865
No 190
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.40 E-value=8.6e-05 Score=80.22 Aligned_cols=102 Identities=13% Similarity=0.115 Sum_probs=68.1
Q ss_pred CCCeEEEEECCCCc--EEEEeecC----------CCCeEEEEEcCCCCEEEEEeCC---------CcEEEEEEcCCCCCC
Q 005349 299 NVGMVIVRDIVSKN--VIAQFRAH----------KSPISALCFDPSGILLVTASVQ---------GHNINIFKIIPGILG 357 (701)
Q Consensus 299 ~dG~V~IwDl~s~~--~i~~~~~H----------~~~Is~laFSPdG~lLaTaS~d---------Gt~I~Iwdl~~~~~~ 357 (701)
..|.|.+.|+.+.. .+..+.-. ......++|+|||+.|..+..+ +..|.++|+.++
T Consensus 232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--- 308 (373)
T 2mad_H 232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--- 308 (373)
T ss_pred CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---
Confidence 45688888887552 33333211 1234458899998877776532 124889998876
Q ss_pred CCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCCCCcee
Q 005349 358 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISS-SRGTSHLFAINPLGGSVN 417 (701)
Q Consensus 358 ~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~-~lAsgS-~dgTI~Iwdl~~~g~~~~ 417 (701)
+.+.++.-|. ...+++|+|||+ ++.++. .+++|.|||+.+......
T Consensus 309 -----------~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 309 -----------QTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred -----------EEEEEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 5555654332 368999999999 677766 589999999987654433
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.33 E-value=7.1e-05 Score=87.07 Aligned_cols=98 Identities=6% Similarity=-0.050 Sum_probs=64.3
Q ss_pred CCeEEEEECCC------Cc-EEEEeecCCCCeEEEEEcCCCCEEEEEeCCCc---EEEEEEcCCCCCCCCCccCCCCcee
Q 005349 300 VGMVIVRDIVS------KN-VIAQFRAHKSPISALCFDPSGILLVTASVQGH---NINIFKIIPGILGTSSACDAGTSYV 369 (701)
Q Consensus 300 dG~V~IwDl~s------~~-~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt---~I~Iwdl~~~~~~~~s~~~~~~~~~ 369 (701)
+..|.+||+.+ +. .+..+..|...+.. .|+|||..|+..+.++. .|.+||+..+ ...
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~------------~~~ 324 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDP------------EES 324 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSC------------CGG
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCC------------Ccc
Confidence 45788999876 43 45667777766665 59999998877665332 4788888654 000
Q ss_pred EEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 370 HLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 370 ~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
....+........|.+++|++++.++++...|+..+||-++
T Consensus 325 ~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~ 365 (710)
T 2xdw_A 325 KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD 365 (710)
T ss_dssp GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEE
Confidence 11223222222358899999888889999999976665554
No 192
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.31 E-value=0.00053 Score=70.87 Aligned_cols=95 Identities=13% Similarity=0.155 Sum_probs=60.7
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEEcCCCCCCCCCccCCCCceeEE-----EEE
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTA-SVQGHNINIFKIIPGILGTSSACDAGTSYVHL-----YRL 374 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTa-S~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l-----~~l 374 (701)
+.|..+|..+++.. .+..+...+..++|+|||+.|..+ +.+++ |.+||+.+. +. ....+ ..+
T Consensus 162 ~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~--g~--------~~~~~~~~~~~~~ 229 (333)
T 2dg1_A 162 GGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDD--GV--------TIQPFGATIPYYF 229 (333)
T ss_dssp EEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTT--SS--------SEEEEEEEEEEEC
T ss_pred ceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCC--Cc--------CcccccceEEEec
Confidence 45666666655443 233333457899999999865444 44554 899998642 00 01111 111
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
.+. ..+..++|++||+++++...++.|.+|+.+
T Consensus 230 -~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 230 -TGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp -CSS--SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred -CCC--CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 111 247889999999988888888999999873
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.27 E-value=0.00024 Score=77.43 Aligned_cols=103 Identities=13% Similarity=0.117 Sum_probs=70.0
Q ss_pred CCCeEEEEECCCCc--EEEEee---c-------CCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEEEcCCCCCC
Q 005349 299 NVGMVIVRDIVSKN--VIAQFR---A-------HKSPISALCFDPSGILLVTASVQ---------GHNINIFKIIPGILG 357 (701)
Q Consensus 299 ~dG~V~IwDl~s~~--~i~~~~---~-------H~~~Is~laFSPdG~lLaTaS~d---------Gt~I~Iwdl~~~~~~ 357 (701)
..|.|.+.|+.+.. .+..+. . ....+..++++|++..|..+..+ ++.|-++|+.++
T Consensus 245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~--- 321 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--- 321 (386)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---
T ss_pred CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC---
Confidence 36899999997654 222221 0 11234458889999888776531 345888999887
Q ss_pred CCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCC-EEEEEe-CCCcEEEEecCCCCCceee
Q 005349 358 TSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIMISS-SRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 358 ~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~-~lAsgS-~dgTI~Iwdl~~~g~~~~~ 418 (701)
+.+.++.-| ..++.|+||+|++ +|.++. .+++|.|+|..+.....++
T Consensus 322 -----------kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 322 -----------ERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp -----------CEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred -----------eEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence 555555433 2488999999997 666654 4899999999886544444
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.26 E-value=0.00011 Score=75.27 Aligned_cols=91 Identities=12% Similarity=0.076 Sum_probs=61.5
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcC-CCCCCCCCccCCCCce-eEEEEEeccC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKII-PGILGTSSACDAGTSY-VHLYRLQRGL 378 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~-~~~~~~~s~~~~~~~~-~~l~~l~rG~ 378 (701)
+.|..+|.. ++ +..+..+......++|+|||++|++.+.+++ |.+|++. ++ .. .....+ ..
T Consensus 153 ~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~-i~~~~~~~~g------------~~~~~~~~~-~~- 215 (296)
T 3e5z_A 153 RWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNA-THRYCLNARG------------ETEYQGVHF-TV- 215 (296)
T ss_dssp CEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTE-EEEEEECSSS------------CEEEEEEEE-CC-
T ss_pred cEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCe-EEEEEECCCC------------cCcCCCeEe-eC-
Confidence 456666655 43 3455566677899999999999966666655 8999986 32 11 111222 21
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
....+.+|+|++||++.++. ++.|.+|+..
T Consensus 216 ~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 216 EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred CCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 22336789999999977666 8899999975
No 195
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.21 E-value=2.7e-06 Score=91.16 Aligned_cols=98 Identities=7% Similarity=0.013 Sum_probs=75.6
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEEcCCCCCCCCCccCCCCce
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV----------QGHNINIFKIIPGILGTSSACDAGTSY 368 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~----------dGt~I~Iwdl~~~~~~~~s~~~~~~~~ 368 (701)
.++.|.+||..+++.+..+..+..+ .++|||||++|.+++. +++ |.+||+.+.
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~-v~v~d~~t~-------------- 91 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDV-VEVWDADKL-------------- 91 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEE-EEEEETTTC--------------
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCE-EEEEECcCC--------------
Confidence 4689999999999999999988766 8999999999999873 444 899998876
Q ss_pred eEEEEEeccC----CcccEEEEEEcCCCCEEEEEeC--CCcEEEEecCCCC
Q 005349 369 VHLYRLQRGL----TNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPLG 413 (701)
Q Consensus 369 ~~l~~l~rG~----~~a~I~~iaFSpDg~~lAsgS~--dgTI~Iwdl~~~g 413 (701)
+.+.++.-+. .......++|||||++|.+++. +++|.|||+.+..
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~ 142 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD 142 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc
Confidence 3444443110 0112457999999999999874 6899999998753
No 196
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.11 E-value=0.0015 Score=67.10 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=58.3
Q ss_pred CCeEEEEEC--CCCc-----EEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 300 VGMVIVRDI--VSKN-----VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 300 dG~V~IwDl--~s~~-----~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
.+.|.+||+ .++. .+..+..+......|+++++|.+.++....++ |.+||..++ +.+.
T Consensus 170 ~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG--------------~~~~ 234 (297)
T 3g4e_A 170 SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTG--------------KRLQ 234 (297)
T ss_dssp GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTC--------------CEEE
T ss_pred CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCc--------------eEEE
Confidence 356777775 3333 23344444456788999999998888777665 899998766 4555
Q ss_pred EEeccCCcccEEEEEEc-CCCCEEEEEeCC
Q 005349 373 RLQRGLTNAVIQDISFS-DDSNWIMISSSR 401 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFS-pDg~~lAsgS~d 401 (701)
.+.-. ...+.+++|+ ||++.|.+++..
T Consensus 235 ~i~~p--~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 235 TVKLP--VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEECS--SSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEECC--CCCceEEEEeCCCCCEEEEEcCC
Confidence 55322 2358999998 899988777654
No 197
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.10 E-value=0.0037 Score=65.35 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=54.2
Q ss_pred CeEEEEECC--CC-c-----EEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 301 GMVIVRDIV--SK-N-----VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 301 G~V~IwDl~--s~-~-----~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
+.|.+||+. ++ + .+..+..+......++++++|.++++...++. |.+||. .+ ..+.
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~-~g--------------~~~~ 264 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDT-DG--------------NHIA 264 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECT-TC--------------CEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECC-CC--------------CEEE
Confidence 566777764 33 2 23334334455678999999998888766665 888987 33 2333
Q ss_pred EEeccCCcccEEEEEEc-CCCCEEEEEeCCC
Q 005349 373 RLQRGLTNAVIQDISFS-DDSNWIMISSSRG 402 (701)
Q Consensus 373 ~l~rG~~~a~I~~iaFS-pDg~~lAsgS~dg 402 (701)
.+.- ....+.+++|+ +|++.|.+++.++
T Consensus 265 ~i~~--~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 265 RYEV--PGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEC--SCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEC--CCCCcEEEEEecCCCCEEEEEecCC
Confidence 4321 12359999998 9988876665543
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.09 E-value=0.00037 Score=81.55 Aligned_cols=96 Identities=7% Similarity=-0.005 Sum_probs=65.1
Q ss_pred CCeEEEEECCCC--cEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCC-CCCCCCCccCCCCceeEEEEEec
Q 005349 300 VGMVIVRDIVSK--NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIP-GILGTSSACDAGTSYVHLYRLQR 376 (701)
Q Consensus 300 dG~V~IwDl~s~--~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~-~~~~~~s~~~~~~~~~~l~~l~r 376 (701)
.+.|.+||+.++ .....+..+...+..++|+ ++.++++...+|. .+||.+.. + ..+..+.-
T Consensus 340 ~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~g--------------~~~~~l~~ 403 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFDLDG--------------KPAGAVSL 403 (741)
T ss_dssp TCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEETTS--------------CEEEECBC
T ss_pred CCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCCC--------------CceeeccC
Confidence 467999998874 3444455555667788888 7788999999986 67876642 2 23334421
Q ss_pred cCCcccEEEEEEcCCCCEEEEEe----CCCcEEEEecCCC
Q 005349 377 GLTNAVIQDISFSDDSNWIMISS----SRGTSHLFAINPL 412 (701)
Q Consensus 377 G~~~a~I~~iaFSpDg~~lAsgS----~dgTI~Iwdl~~~ 412 (701)
.....|..++|+||++.|+... ..++|.+||+.+.
T Consensus 404 -~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 404 -PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp -SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred -CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 1234588999999998776332 2478999998653
No 199
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.04 E-value=0.00036 Score=75.53 Aligned_cols=54 Identities=11% Similarity=-0.100 Sum_probs=44.2
Q ss_pred EEEEEECCCCcEEEEEecC-CCEEEEEec--CCEEEEEe-----------CCEEEEEECCCCceeEEEec
Q 005349 118 VVHFYSLRSQSYVHMLKFR-SPIYSVRCS--SRVVAICQ-----------AAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 118 tVriWdl~tg~~v~tL~f~-s~V~sV~~s--~~~LaVa~-----------~~~I~iwDl~t~~~~~tl~t 173 (701)
+|.++|+.+++.+.++... .+ .+.++ ++.|.|+. ++.|.+||+.|++.+.++..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v 114 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence 8999999999999999863 34 68886 45666653 57899999999999999864
No 200
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.04 E-value=2e-06 Score=92.66 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=49.2
Q ss_pred CCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
..+|.|+.||..+++.+..+..+. ...++|++..|++++.+|+ |+.||..++ ..++++..+
T Consensus 99 ~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG--------------~~~W~~~~~ 159 (369)
T 2hz6_A 99 KKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTR--------------ELRWNATYF 159 (369)
T ss_dssp EEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSSS--------------SCCCEEEEE
T ss_pred eCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCCC--------------CEEEeEecc
Confidence 456889999999999988887664 2467788999999999887 899999887 233333211
Q ss_pred CCcccEEEEEEcCCC---CEEEEEeCCCcEEEEecCCC
Q 005349 378 LTNAVIQDISFSDDS---NWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 378 ~~~a~I~~iaFSpDg---~~lAsgS~dgTI~Iwdl~~~ 412 (701)
.....+++.|. ..+.+++.||.++.||..+.
T Consensus 160 ----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 160 ----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp ----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred ----cccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 12233444443 56777899999999999764
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.01 E-value=0.0003 Score=81.69 Aligned_cols=97 Identities=8% Similarity=-0.058 Sum_probs=60.2
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~---dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
.|.+||..+++ ...+..|...+....+ ++|.++++++. +++ |.+||+.++ .......+-...
T Consensus 253 ~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~-l~~~d~~~~------------~~~~~~~l~~~~ 317 (695)
T 2bkl_A 253 DVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQR-VFEVDPAKP------------ARASWKEIVPED 317 (695)
T ss_dssp EEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCE-EEEEBTTBC------------SGGGCEEEECCC
T ss_pred EEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCE-EEEEeCCCC------------CccCCeEEecCC
Confidence 56677665554 3455556666666666 56665555542 344 888888654 100011222222
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~ 414 (701)
....|.+++|+ +++++++.+.|++.+||.++..++
T Consensus 318 ~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 318 SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGK 352 (695)
T ss_dssp SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 23348899999 788999999999999998875444
No 202
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.01 E-value=0.00022 Score=75.29 Aligned_cols=72 Identities=11% Similarity=0.062 Sum_probs=49.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC
Q 005349 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 321 ~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
......|+++++|.++++...++. |.+||..++ . +..+.+........+|+|++|++++++.+.
T Consensus 247 ~g~pdgia~d~~G~l~va~~~~~~-V~~~d~~~G--------------~-~~~~~~~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 247 KPICDGISIDKDHNIYVGDLAHSA-IGVITSADR--------------A-YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp CCSCSCEEECTTCCEEEEEGGGTE-EEEEETTTT--------------E-EEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred CCCCceEEECCCCCEEEEccCCCe-EEEEECCCC--------------C-EEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence 334566999999999998887775 899997444 2 122222211234889999999998888876
Q ss_pred CCcEEEEe
Q 005349 401 RGTSHLFA 408 (701)
Q Consensus 401 dgTI~Iwd 408 (701)
.+.+.+|.
T Consensus 311 ~~~~~~f~ 318 (343)
T 2qe8_A 311 LHHSAPLN 318 (343)
T ss_dssp GGGSGGGB
T ss_pred cccccccc
Confidence 65554444
No 203
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.01 E-value=0.0098 Score=59.50 Aligned_cols=92 Identities=9% Similarity=0.031 Sum_probs=64.1
Q ss_pred CCeEEEEECCCCcEEEE-eecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 300 VGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~-~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
.+.|.+||. +++.... +..+...+.+|+++++|+++++...++. |.+||. ++ . ...+.+. .
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g------------~-~~~~~~~--~ 222 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SG------------E-ITEFKIP--T 222 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TC------------C-EEEEECS--S
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CC------------c-EEEEECC--C
Confidence 356788887 5554332 3344567889999999998887766665 899988 54 1 1222221 1
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
....+.+|+++++|+..++...++.|.+|+.
T Consensus 223 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 223 PNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 2234899999999997777767889999997
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.98 E-value=0.0032 Score=64.69 Aligned_cols=82 Identities=7% Similarity=0.079 Sum_probs=52.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCC
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d 401 (701)
...+.++|+|||+.|..++.....|.+||+... .+. ....+.+..+.. .......+++++||++.++....
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~-~G~------~~~~~~~~~~~~--~~~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ-TGQ------ISNRRSVYKLEK--EEQIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT-TCC------EEEEEEEEECCG--GGCEEEEEEEBTTSCEEEEEETT
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCC-CCc------ccCcEEEEECCC--CCCCCCeeEECCCCCEEEEEcCC
Confidence 456789999999877555443334899987421 000 000112222221 12347899999999988888888
Q ss_pred CcEEEEecCCC
Q 005349 402 GTSHLFAINPL 412 (701)
Q Consensus 402 gTI~Iwdl~~~ 412 (701)
++|.+|+..+.
T Consensus 220 ~~v~~~d~~tG 230 (297)
T 3g4e_A 220 GRVIRLDPVTG 230 (297)
T ss_dssp TEEEEECTTTC
T ss_pred CEEEEEcCCCc
Confidence 89999987654
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.94 E-value=0.00043 Score=76.38 Aligned_cols=75 Identities=13% Similarity=0.165 Sum_probs=54.7
Q ss_pred EEEcCCCCEEEEEeCC---------CcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCC-EEE
Q 005349 327 LCFDPSGILLVTASVQ---------GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN-WIM 396 (701)
Q Consensus 327 laFSPdG~lLaTaS~d---------Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~-~lA 396 (701)
++|+|||+.|..+..+ +..|-|+|+.+. +.+.++.-|. ....|+|+|||+ ++.
T Consensus 324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~--------------kvv~~I~vg~---~P~gia~spDg~~~ly 386 (426)
T 3c75_H 324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG--------------ERINKIELGH---EIDSINVSQDAEPLLY 386 (426)
T ss_dssp EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC--------------CEEEEEEEEE---EECEEEECCSSSCEEE
T ss_pred eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC--------------eEEEEEECCC---CcCeEEEccCCCEEEE
Confidence 6899998876665421 124899999887 4555554332 367899999999 888
Q ss_pred EEe-CCCcEEEEecCCCCCceee
Q 005349 397 ISS-SRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 397 sgS-~dgTI~Iwdl~~~g~~~~~ 418 (701)
++. .+++|.|+|+.+.....++
T Consensus 387 v~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 387 ALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEETTTTEEEEEETTTCCEEEEE
T ss_pred EEcCCCCeEEEEECCCCCEEEEe
Confidence 887 5999999999887655454
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.94 E-value=0.0039 Score=67.85 Aligned_cols=72 Identities=11% Similarity=0.211 Sum_probs=50.6
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe-c----cC--------CcccEEEEEE
Q 005349 323 PISALCFDPSGILLVTAS-VQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-R----GL--------TNAVIQDISF 388 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTaS-~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~-r----G~--------~~a~I~~iaF 388 (701)
....|+|+|+|.++++-+ .+ +.|+.|++..+ . +..+- + |. .-....+|++
T Consensus 324 ~P~gia~d~dG~lyvad~~~~-~~I~~~~~~~G--------------~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giav 387 (409)
T 3hrp_A 324 QPNGMTVDEDGNFYIVDGFKG-YCLRKLDILDG--------------Y-VSTVAGQVDVASQIDGTPLEATFNYPYDICY 387 (409)
T ss_dssp SEEEEEECTTCCEEEEETTTT-CEEEEEETTTT--------------E-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEE
T ss_pred CCeEEEEeCCCCEEEEeCCCC-CEEEEEECCCC--------------E-EEEEeCCCCCCCcCCCChhceEeCCceEEEE
Confidence 468899999999777655 44 55999997665 1 11211 1 00 0123789999
Q ss_pred cCCCCEEEEEeCCCcEEEEecC
Q 005349 389 SDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 389 SpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
++||+++++-..+++|+.++++
T Consensus 388 d~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 388 DGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp CSSSEEEEEESTTCEEEEEEEC
T ss_pred cCCCCEEEEECCCCeEEEEEeC
Confidence 9999988888889999988763
No 207
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.89 E-value=0.003 Score=73.57 Aligned_cols=105 Identities=12% Similarity=0.149 Sum_probs=74.3
Q ss_pred cCCCCeEEEEECCCCcEEEEeecCC-----------CCe------------------------EEEEEcCCCCEEEEEeC
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFRAHK-----------SPI------------------------SALCFDPSGILLVTASV 341 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~~H~-----------~~I------------------------s~laFSPdG~lLaTaS~ 341 (701)
+..+|.|.++|..+++++..++-.. .++ ..++|+|++.+|.....
T Consensus 333 ~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~ 412 (677)
T 1kb0_A 333 APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQ 412 (677)
T ss_dssp CCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEE
T ss_pred ECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeCh
Confidence 4457888888888888877665221 011 15789999888877653
Q ss_pred C-------------------------------------------CcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 342 Q-------------------------------------------GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 342 d-------------------------------------------Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
+ |+ |..||+.++ +.++++.-+.
T Consensus 413 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~-l~A~D~~tG--------------~~~W~~~~~~ 477 (677)
T 1kb0_A 413 NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR-LLAWDPVAQ--------------KAAWSVEHVS 477 (677)
T ss_dssp ECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE-EEEEETTTT--------------EEEEEEEESS
T ss_pred hcceeeecccccccccccccccccccccccccccccccCCCCCccE-EEEEeCCCC--------------cEEeecCCCC
Confidence 2 44 788898887 6667765432
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~ 419 (701)
.+.+..++.++.+++.++.||++++||+.+....-.+.
T Consensus 478 ---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 478 ---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp ---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ---CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 24556688888999999999999999998765444554
No 208
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.88 E-value=0.0046 Score=63.86 Aligned_cols=174 Identities=13% Similarity=0.099 Sum_probs=114.8
Q ss_pred cEEEEEECCCCcEEEEEecCCC--EEEEEecCCEEEEE--eCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSP--IYSVRCSSRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~--V~sV~~s~~~LaVa--~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
++|+++|++||+.+.++..+.. .-.+.+.++.|-++ .+++|.+||..|++.+.++..- .+. +
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~----------g--- 109 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD----------G--- 109 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS----------C---
T ss_pred CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC----------e---
Confidence 7899999999999999987553 33566666555554 4789999999999988776431 100 0
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
+. |++. |..
T Consensus 110 ~g-----lt~D-----------------------------g~~------------------------------------- 118 (266)
T 2iwa_A 110 WG-----LATD-----------------------------GKI------------------------------------- 118 (266)
T ss_dssp CE-----EEEC-----------------------------SSS-------------------------------------
T ss_pred EE-----EEEC-----------------------------CCE-------------------------------------
Confidence 11 1111 000
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecC--C---CCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH--K---SPISALCFDPSGILLVTASVQGHNIN 347 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H--~---~~Is~laFSPdG~lLaTaS~dGt~I~ 347 (701)
.++ ++.+++|.++|..+.+.+..+.-- . ..++.|.|. +|++.++.-.+++ |.
T Consensus 119 --------------------l~v-s~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~-V~ 175 (266)
T 2iwa_A 119 --------------------LYG-SDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC-IA 175 (266)
T ss_dssp --------------------EEE-ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE-EE
T ss_pred --------------------EEE-ECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe-EE
Confidence 001 123578999999999988887732 1 246788998 8877766655554 89
Q ss_pred EEEcCCCCCCCCCccCCCCceeEEEEEec-cCC----------cccEEEEEEcCCCCEEE-EEeCCCcEEEEecCCC
Q 005349 348 IFKIIPGILGTSSACDAGTSYVHLYRLQR-GLT----------NAVIQDISFSDDSNWIM-ISSSRGTSHLFAINPL 412 (701)
Q Consensus 348 Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r-G~~----------~a~I~~iaFSpDg~~lA-sgS~dgTI~Iwdl~~~ 412 (701)
+.|..++ +.+..+.- |.. ......|+|+||++.|. ++-..+++.+.++.+.
T Consensus 176 vID~~tg--------------~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 176 RISAKDG--------------TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEETTTC--------------CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEECCCC--------------cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999887 33344431 210 12368999999987655 4556788888888764
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.88 E-value=6.3e-05 Score=82.09 Aligned_cols=89 Identities=9% Similarity=0.085 Sum_probs=72.8
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
.+|.|++||+.+......+..|..+|.++.+.+.. +|.++.||+ +.+||+..+ ... .+.
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~-L~v~dl~~~--------------~~~-~~~--- 162 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVND-LSALDLRTK--------------STK-QLA--- 162 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSE-EEEEETTTC--------------CEE-EEE---
T ss_pred cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCC-EEEEEccCC--------------ccc-ccc---
Confidence 56899999999887777788899999998888753 888999997 899999876 222 221
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
..|.|+||||+| ++.|..||++++|+....
T Consensus 163 --~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~ 192 (388)
T 1xip_A 163 --QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG 192 (388)
T ss_dssp --ESEEEEEECSSE--EEEEETTSCEEEEEEETT
T ss_pred --CCceEEEEcCCc--eEEEEcCCcEEEEcCCCc
Confidence 249999999999 788999999999987644
No 210
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.86 E-value=0.00033 Score=81.29 Aligned_cols=94 Identities=7% Similarity=0.061 Sum_probs=59.8
Q ss_pred CeEEEEECCCCc----EEEEeecCCCCeEEEEEcCCCCEEEEEeCCC-c--EEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 301 GMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGILLVTASVQG-H--NINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 301 G~V~IwDl~s~~----~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG-t--~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
..|++|++.++. ++.....|...+..++|||||++|+.++.++ . .|.+|+...+ ....+.
T Consensus 202 ~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~------------~~~~l~- 268 (695)
T 2bkl_A 202 TTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK------------DFRLLV- 268 (695)
T ss_dssp CEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS------------SCEEEE-
T ss_pred CEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC------------ceEEee-
Confidence 569999998875 4444456767899999999999998887665 2 2455543322 112222
Q ss_pred EeccCCcccEEEEEEcCCCCEEEEEeC----CCcEEEEecCCCC
Q 005349 374 LQRGLTNAVIQDISFSDDSNWIMISSS----RGTSHLFAINPLG 413 (701)
Q Consensus 374 l~rG~~~a~I~~iaFSpDg~~lAsgS~----dgTI~Iwdl~~~g 413 (701)
.+.. .+....| +||+ |+..+. +++|.+|++...+
T Consensus 269 --~~~~--~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 269 --KGVG--AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp --ECSS--CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred --cCCC--ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 1211 2455556 6777 555454 5789999987643
No 211
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.83 E-value=0.002 Score=66.38 Aligned_cols=162 Identities=10% Similarity=0.146 Sum_probs=106.3
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEE--EEecCCEEEEE--eCCEEEEEECCCCceeEEEecCCCccCCCCCCCCCcccce
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYS--VRCSSRVVAIC--QAAQVHCFDAATLEIEYAILTNPIVMGHPSAGGIGIGYGP 192 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~s--V~~s~~~LaVa--~~~~I~iwDl~t~~~~~tl~t~~~~~~~~~~~~~~~~~~p 192 (701)
..|+.+|++||+.+.++..+..... |.+.++.|-++ .++++.+||..|++.+.++.... . +
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~--e----------G--- 129 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG--E----------G--- 129 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS--C----------C---
T ss_pred ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC--C----------c---
Confidence 5799999999999999998766543 56655544443 47899999999999888875321 0 0
Q ss_pred eeeccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchhceeEEcCCccceecccccccccCC
Q 005349 193 LAVGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLAAGIVNLGDLGYKKLSQYCSEFLPD 272 (701)
Q Consensus 193 iAls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la~gl~~lGd~g~~~ls~y~~~~~p~ 272 (701)
.+ |++. +.. |
T Consensus 130 ~g-----lt~d-----------------------------g~~-----------L------------------------- 139 (262)
T 3nol_A 130 WG-----LTHN-----------------------------DQY-----------L------------------------- 139 (262)
T ss_dssp CC-----EEEC-----------------------------SSC-----------E-------------------------
T ss_pred eE-----EecC-----------------------------CCE-----------E-------------------------
Confidence 11 1111 000 0
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecC--C---CCeEEEEEcCCCCEEEEEeCCCcEEE
Q 005349 273 SQNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAH--K---SPISALCFDPSGILLVTASVQGHNIN 347 (701)
Q Consensus 273 ~~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H--~---~~Is~laFSPdG~lLaTaS~dGt~I~ 347 (701)
+. ++..++|.++|..+.+.+..+... . ..++.|.|. +|++.|..-.+. .|.
T Consensus 140 ---------------------~~-SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~-~I~ 195 (262)
T 3nol_A 140 ---------------------IM-SDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTN-KIV 195 (262)
T ss_dssp ---------------------EE-CCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS-EEE
T ss_pred ---------------------EE-ECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCC-eEE
Confidence 00 112467999999999988887742 2 345668887 888776664554 588
Q ss_pred EEEcCCCCCCCCCccCCCCceeEEEEEeccC---------CcccEEEEEEcCCCCEEEEEeC
Q 005349 348 IFKIIPGILGTSSACDAGTSYVHLYRLQRGL---------TNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 348 Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~---------~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
+.|..++ .+.....+. +. .....+.|||+|+++.|.+.+.
T Consensus 196 vIDp~tG------------~V~~~Id~~-~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 196 RIDPETG------------KVTGIIDLN-GILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EECTTTC------------BEEEEEECT-TGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEECCCC------------cEEEEEECC-cCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9998887 233334431 11 1124689999999888877664
No 212
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.77 E-value=0.00086 Score=66.82 Aligned_cols=95 Identities=9% Similarity=-0.000 Sum_probs=64.2
Q ss_pred CCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
++.|.+||..+.........+...+.+|+|+|+|+++++...++. |.+||.... ........+.
T Consensus 128 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~~~--------------~~~~~~~~~~- 191 (270)
T 1rwi_B 128 NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VVKLEAESN--------------NQVVLPFTDI- 191 (270)
T ss_dssp GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EEEECTTTC--------------CEEECCCSSC-
T ss_pred CCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EEEEecCCC--------------ceEeecccCC-
Confidence 356777766554433222233346788999999998888776665 899997654 1111111111
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
..+.+|++++||+.+++...++.|.+|+...
T Consensus 192 -~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 192 -TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp -CSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred -CCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence 3488999999998888888889999998754
No 213
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.73 E-value=0.0066 Score=61.62 Aligned_cols=99 Identities=11% Similarity=0.104 Sum_probs=61.5
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEc----CCCCEEEEEe-CCCcEEEEEEcC-CCCCCCCCccCCCCceeEEEEE
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFD----PSGILLVTAS-VQGHNINIFKII-PGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFS----PdG~lLaTaS-~dGt~I~Iwdl~-~~~~~~~s~~~~~~~~~~l~~l 374 (701)
+.|..||.. ++... +..+......++|+ |||+.|..+. .++. |.+||+. .+. .........+
T Consensus 153 ~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~-i~~~~~~~~g~---------~~~~~~~~~~ 220 (314)
T 1pjx_A 153 GSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK-LWSYDIKGPAK---------IENKKVWGHI 220 (314)
T ss_dssp EEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTE-EEEEEEEETTE---------EEEEEEEEEC
T ss_pred CeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCe-EEEEECCCCCc---------cccceEEEEC
Confidence 566777765 44432 33333456889999 9997655554 4554 8999976 330 0000111222
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
. +.....+..++|++||+++++...++.|.+|+..+.
T Consensus 221 ~-~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g 257 (314)
T 1pjx_A 221 P-GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG 257 (314)
T ss_dssp C-CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred C-CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC
Confidence 1 111034788999999999988888999999997643
No 214
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.69 E-value=0.0012 Score=73.00 Aligned_cols=85 Identities=13% Similarity=0.124 Sum_probs=57.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC-------c-c----cEEEEEEcC
Q 005349 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT-------N-A----VIQDISFSD 390 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~-------~-a----~I~~iaFSp 390 (701)
....|.+||||++|..+......|.+||+... + ..+.+..+.-|-. . . .-+.+++||
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~--~---------~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp 390 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNP--F---------KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR 390 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECSST--T---------SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEecCC--C---------CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC
Confidence 46789999999999888887677999998632 0 1134444443310 0 0 136799999
Q ss_pred CCCEEEEEe------------CCCcEEEE--ecCCCCCceeec
Q 005349 391 DSNWIMISS------------SRGTSHLF--AINPLGGSVNFQ 419 (701)
Q Consensus 391 Dg~~lAsgS------------~dgTI~Iw--dl~~~g~~~~~~ 419 (701)
||++|.++. .+..+.++ ++++.++ .++.
T Consensus 391 DGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~~~ 432 (462)
T 2ece_A 391 DGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LEID 432 (462)
T ss_dssp TSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EEEE
T ss_pred CCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC-ceeC
Confidence 999999998 33345555 7787777 5553
No 215
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.67 E-value=0.0035 Score=73.27 Aligned_cols=98 Identities=12% Similarity=0.110 Sum_probs=63.0
Q ss_pred CCeEEEEECCCCc----EEEEeecCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 300 VGMVIVRDIVSKN----VIAQFRAHKSPISALCFDPSGILLVTASVQG----HNINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 300 dG~V~IwDl~s~~----~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG----t~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
...|.+|++.++. .+.....|...+..+.|||||++|+..+.++ ..|.+||+..+ ...+.
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~------------~~~~~ 309 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG------------KIGPV 309 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT------------EECCC
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC------------CCccc
Confidence 3568899987765 2323334444689999999999998887654 35899998654 00002
Q ss_pred EEEeccCCcccEEEEEEcCCCCEEEEEeCCC----cEEEEecCCC
Q 005349 372 YRLQRGLTNAVIQDISFSDDSNWIMISSSRG----TSHLFAINPL 412 (701)
Q Consensus 372 ~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dg----TI~Iwdl~~~ 412 (701)
..+..+. .. +... ++|||++|+..+.++ .|.+|++...
T Consensus 310 ~~l~~~~-~~-~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 310 TALIPDL-KA-QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEEECSS-SS-CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEecCCC-Cc-eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 2332222 12 3333 359999999988754 4888998764
No 216
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.66 E-value=0.0015 Score=76.05 Aligned_cols=85 Identities=14% Similarity=0.245 Sum_probs=62.1
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
..|.|..||+.+++.+-+++.. .++....++.+|.+++.++.||+ +++||+.++ +.++++.-+.
T Consensus 455 ~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~-l~a~D~~tG--------------~~lw~~~~~~ 518 (677)
T 1kb0_A 455 PFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGR-LVAYHAATG--------------EKLWEAPTGT 518 (677)
T ss_dssp CEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECSS
T ss_pred CccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCc-EEEEECCCC--------------ceeeeeeCCC
Confidence 3489999999999998888743 34555667788888999999997 899999998 6777776443
Q ss_pred CcccEEEEEEcCCCCEE-EEEeC
Q 005349 379 TNAVIQDISFSDDSNWI-MISSS 400 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~l-AsgS~ 400 (701)
. ..-.-+.|+.||+.+ ++.+.
T Consensus 519 ~-~~~~p~~y~~~G~~~v~~~~G 540 (677)
T 1kb0_A 519 G-VVAAPSTYMVDGRQYVSVAVG 540 (677)
T ss_dssp C-CCSCCEEEEETTEEEEEEEEC
T ss_pred C-cccCCEEEEeCCEEEEEEecc
Confidence 1 123456788898754 44333
No 217
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.66 E-value=0.0028 Score=65.45 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=43.8
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEE--EEecCCEEEEE--eCCEEEEEECCCCceeEEEec
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYS--VRCSSRVVAIC--QAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~s--V~~s~~~LaVa--~~~~I~iwDl~t~~~~~tl~t 173 (701)
+.|+.+|++||+.+.++ ++..... |.+.++.|-++ .++++.+||+.|++.+.++..
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 56999999999999999 8766544 66655444433 488999999999998888753
No 218
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.63 E-value=0.00017 Score=78.66 Aligned_cols=102 Identities=12% Similarity=0.054 Sum_probs=75.3
Q ss_pred CCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEEcCCCCCCCCCccCCCCcee
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV----------QGHNINIFKIIPGILGTSSACDAGTSYV 369 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~----------dGt~I~Iwdl~~~~~~~~s~~~~~~~~~ 369 (701)
++.|.+.|..+++.+.+++.-..| . |+|||||++|..++. ++ .|.+||..+. .
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~-~VsviD~~t~--------------~ 120 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTD-YVEVFDPVTL--------------L 120 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEE-EEEEECTTTC--------------C
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCC-EEEEEECCCC--------------e
Confidence 579999999999999999966667 4 999999998877762 33 4999999887 3
Q ss_pred EEEEEeccC-----CcccEEEEEEcCCCCEEEEEeC--CCcEEEEecCCCCCceee
Q 005349 370 HLYRLQRGL-----TNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 370 ~l~~l~rG~-----~~a~I~~iaFSpDg~~lAsgS~--dgTI~Iwdl~~~g~~~~~ 418 (701)
.+.++.-+. ....-..++|+|||++|.++.. +++|.|+|+.+..-..++
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI 176 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML 176 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 444442111 1112346899999999998874 689999999876433333
No 219
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.61 E-value=0.0069 Score=67.02 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=67.8
Q ss_pred CCCCeEEEEECCCCcEEEEeecC-C-CCeEEEEE--cCCCCEEEEEeC-----CCcEEEEEEcCCCCCCCCCccCCCCce
Q 005349 298 DNVGMVIVRDIVSKNVIAQFRAH-K-SPISALCF--DPSGILLVTASV-----QGHNINIFKIIPGILGTSSACDAGTSY 368 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~~~~H-~-~~Is~laF--SPdG~lLaTaS~-----dGt~I~Iwdl~~~~~~~~s~~~~~~~~ 368 (701)
.....|.+||+.+++.+.++..- . ..-..|.| +|+|+++..+.. ....|.+|....+. + ..
T Consensus 225 ~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~--------~--~~ 294 (462)
T 2ece_A 225 RYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK--------W--NA 294 (462)
T ss_dssp HSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE--------E--EE
T ss_pred ccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc--------e--eE
Confidence 34578999999999888888753 2 22334556 999998887776 54447666654330 0 00
Q ss_pred eEEEEEec----cC----------CcccEEEEEEcCCCCEEEEEeC-CCcEEEEecCCC
Q 005349 369 VHLYRLQR----GL----------TNAVIQDISFSDDSNWIMISSS-RGTSHLFAINPL 412 (701)
Q Consensus 369 ~~l~~l~r----G~----------~~a~I~~iaFSpDg~~lAsgS~-dgTI~Iwdl~~~ 412 (701)
.....+.. +. ......+|.+|+||++|.++.. .++|.+||+...
T Consensus 295 ~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 295 EKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp EEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred EEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 11111111 00 0123678999999999988776 789999999744
No 220
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.60 E-value=0.072 Score=53.01 Aligned_cols=92 Identities=12% Similarity=0.021 Sum_probs=60.4
Q ss_pred CCeEEEEECCCCcEEE-EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 300 VGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~-~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
.+.|.+||. +++... .+..+...+.+|+++++|+++++...++. |.+||. .+ . ...+.+..+
T Consensus 203 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~d~-~g------------~-~~~~~~~~~- 265 (299)
T 2z2n_A 203 GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANK-IGRLTS-NN------------I-IEEYPIQIK- 265 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEEET-TT------------E-EEEEECSSS-
T ss_pred CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCce-EEEECC-CC------------c-eEEEeCCCC-
Confidence 456888887 555332 23345578999999999998887656665 899997 33 1 222223221
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
...+.++++ ++|++.++.+ .+.+..|+..+
T Consensus 266 -~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 266 -SAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp -SCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred -CCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 235899999 9998877765 56677777654
No 221
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.58 E-value=0.077 Score=52.84 Aligned_cols=92 Identities=10% Similarity=0.063 Sum_probs=61.3
Q ss_pred CCeEEEEECCCCcEEE-EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 300 VGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~-~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
.+.|.++|. +++... .+..+...+..|+++++|+++++....+. |.+||. .+ . ...+.+..
T Consensus 166 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g------------~-~~~~~~~~-- 227 (300)
T 2qc5_A 166 NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TG------------E-ISEYDIPT-- 227 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TC------------C-EEEEECSS--
T ss_pred CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CC------------c-EEEEECCC--
Confidence 356777777 444332 12234567899999999998887665554 888887 33 1 12222211
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
....+.+|+++++|+..++...++.|.+|+.
T Consensus 228 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 228 PNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 1234889999999997777767789999987
No 222
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.56 E-value=0.015 Score=59.12 Aligned_cols=57 Identities=12% Similarity=0.115 Sum_probs=44.5
Q ss_pred cEEEEEECCCCcEEEEEecCCCEE--EEEecCCEEEEE--eCCEEEEEECCCCceeEEEec
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIY--SVRCSSRVVAIC--QAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~--sV~~s~~~LaVa--~~~~I~iwDl~t~~~~~tl~t 173 (701)
..|+.+|++||+.+.++..+.... .+.+.++.|-+. .++++.+||+.|++.+.++..
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~ 103 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRY 103 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeC
Confidence 679999999999999999877654 345544444433 488999999999998888753
No 223
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.50 E-value=0.014 Score=63.48 Aligned_cols=96 Identities=7% Similarity=0.013 Sum_probs=59.5
Q ss_pred CCeEEEEECCCCcEEEE----eecCCC--CeEEEEEcCC-CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 300 VGMVIVRDIVSKNVIAQ----FRAHKS--PISALCFDPS-GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~----~~~H~~--~Is~laFSPd-G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
++.|+.||..++..... ..++.. |.+.|+|+|+ |.++++-... +.|+.|+.... ....
T Consensus 239 ~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~-~~I~~~~~~g~--------------~~~~ 303 (409)
T 3hrp_A 239 NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL-SSVYKITPDGE--------------CEWF 303 (409)
T ss_dssp TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT-TEEEEECTTCC--------------EEEE
T ss_pred CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC-CEEEEEecCCC--------------EEEE
Confidence 56888899887653222 222222 2248999995 6666655545 45888876431 1111
Q ss_pred EEec----cCC--------cccEEEEEEcCCCCEEEEEe-CCCcEEEEecCC
Q 005349 373 RLQR----GLT--------NAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 411 (701)
Q Consensus 373 ~l~r----G~~--------~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~ 411 (701)
.-. |.. -.....|+|++||+++++-+ .+++|++|++..
T Consensus 304 -~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 304 -CGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp -EECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred -EeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 101 100 11278999999999888887 889999999743
No 224
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.45 E-value=0.0011 Score=71.45 Aligned_cols=94 Identities=11% Similarity=0.005 Sum_probs=68.9
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~---------dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
.|.++|..+++.+..++.-..+ .++|||||++|..+.. +...|.+||+.+. ..+.
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--------------~~~~ 111 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--------------LPIA 111 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--------------cEEE
Confidence 8999999999999988865555 8999999999998863 1234899999775 2333
Q ss_pred EEecc-----CCcccEEEEEEcCCCCEEEEEeC--CCcEEEEecCCC
Q 005349 373 RLQRG-----LTNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPL 412 (701)
Q Consensus 373 ~l~rG-----~~~a~I~~iaFSpDg~~lAsgS~--dgTI~Iwdl~~~ 412 (701)
++.-+ .+...-..++|||||++|.+++. +++|.++| .+.
T Consensus 112 ~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~ 157 (373)
T 2mad_H 112 DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG 157 (373)
T ss_pred EEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC
Confidence 32211 00011357999999999999874 57899999 654
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.43 E-value=0.054 Score=56.38 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=58.6
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCC-CCCccCCCCceeEEEEEeccCC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILG-TSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~-~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
+.|..+| +++. ..+..+......++|+|||+.|..++.....|.+||+... .+ . ......+..+. + .
T Consensus 161 ~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~-~Gl~------~~~~~~~~~~~-~-~ 228 (326)
T 2ghs_A 161 GSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR-TGLP------TGKAEVFIDST-G-I 228 (326)
T ss_dssp EEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT-TCCB------SSCCEEEEECT-T-S
T ss_pred eEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccc-cCCc------ccCceEEEECC-C-C
Confidence 4556666 4443 3333333456789999999877655544345899998521 01 0 00112222221 1 1
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
.....++++++||++.++...++.|.+|+.
T Consensus 229 ~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 229 KGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp SSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred CCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 223778999999998887777788999986
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.36 E-value=0.00047 Score=74.62 Aligned_cols=94 Identities=10% Similarity=-0.026 Sum_probs=71.4
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEe---------CCCcEEEEEEcCCCCCCCCCccCCCCceeEEE
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS---------VQGHNINIFKIIPGILGTSSACDAGTSYVHLY 372 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS---------~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~ 372 (701)
.|.++|..+++.+.++..-..| .++|||||++|..+. .++..|.+||+.++ +.+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--------------~vv~ 110 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--------------LPIA 110 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--------------CEEE
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------------CEEE
Confidence 8999999999999999966667 799999999988886 22345999999987 4455
Q ss_pred EEecc--C---CcccEEEEEEcCCCCEEEEEeC--CCcEEE--EecCC
Q 005349 373 RLQRG--L---TNAVIQDISFSDDSNWIMISSS--RGTSHL--FAINP 411 (701)
Q Consensus 373 ~l~rG--~---~~a~I~~iaFSpDg~~lAsgS~--dgTI~I--wdl~~ 411 (701)
++.-+ . ....-..++|||||++|.++.. ..++.+ +|+.+
T Consensus 111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 55322 0 0011346899999999999875 467888 88865
No 227
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.36 E-value=0.14 Score=50.82 Aligned_cols=90 Identities=12% Similarity=0.086 Sum_probs=57.7
Q ss_pred CCeEEEEECCCCcEEE-EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 300 VGMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~-~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
.+.|.+||. +++... .+..+...+.+|+++++|+++++...++. |.+||. .+ . ...+.+..+
T Consensus 208 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g------------~-~~~~~~~~~- 270 (300)
T 2qc5_A 208 GNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQ-IGRITN-DN------------T-IQEYQLQTE- 270 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEECT-TS------------C-EEEEECCST-
T ss_pred CCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCe-EEEECC-CC------------c-EEEEECCcc-
Confidence 356777777 443332 23345567899999999998887665555 888887 33 1 222333222
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
...+.+|++++||+..++.. . .|..|+.
T Consensus 271 -~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 271 -NAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp -TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred -CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 23488999999998766655 4 6666664
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.30 E-value=0.23 Score=51.97 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=41.5
Q ss_pred cEEEEEECCCCcEEEEEecCCCEE-EEEecCCEE-EEEeCCEEEEEECCCCceeEEEec
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIY-SVRCSSRVV-AICQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~-sV~~s~~~L-aVa~~~~I~iwDl~t~~~~~tl~t 173 (701)
+.|..+|.++|+.+.+......+. ........| +...++.|++||+.+++.+.....
T Consensus 113 g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 113 AQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence 679999999999998888754432 222334444 446688999999999998877654
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.28 E-value=0.24 Score=51.95 Aligned_cols=92 Identities=13% Similarity=0.176 Sum_probs=60.5
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
.+|.+..+|..+++.+..... .....+..+ +..|..++.+|. +..+|..++ +.+++....
T Consensus 247 ~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~-l~~~d~~tG--------------~~~w~~~~~- 306 (376)
T 3q7m_A 247 YNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDR-VMALTIDGG--------------VTLWTQSDL- 306 (376)
T ss_dssp TTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCC-EEEEETTTC--------------CEEEEECTT-
T ss_pred cCcEEEEEECCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCe-EEEEECCCC--------------cEEEeeccc-
Confidence 467888999999888766653 334455443 556666777877 899999887 455555311
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
....+..... .+..|..++.+|.+++||..+.
T Consensus 307 ~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 307 LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTC
T ss_pred CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCC
Confidence 1111222222 3568888999999999998764
No 230
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.28 E-value=0.027 Score=58.00 Aligned_cols=97 Identities=7% Similarity=-0.023 Sum_probs=67.5
Q ss_pred CCCeEEEEECCCCcEEEEeecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe--
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-- 375 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H-~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~-- 375 (701)
.++.|.++|..+.+.+.+|..- ... ..+++||+.|..+..+++ |.++|..+. +.+.++.
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~-l~viD~~t~--------------~v~~~I~Vg 145 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSI-LYEIDPHTF--------------KLIKKHNVK 145 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSE-EEEECTTTC--------------CEEEEEECE
T ss_pred cCCEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCe-EEEEECCCC--------------cEEEEEEEC
Confidence 5678999999999999999743 222 446678887777776554 899998775 3333332
Q ss_pred -ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCC
Q 005349 376 -RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGG 414 (701)
Q Consensus 376 -rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~ 414 (701)
++.....+..+.|. ||+..+....+++|.+-|..+...
T Consensus 146 ~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V 184 (266)
T 2iwa_A 146 YNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTL 184 (266)
T ss_dssp ETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCE
T ss_pred CCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcE
Confidence 22222237788888 887766666788999999877543
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.25 E-value=0.04 Score=64.17 Aligned_cols=60 Identities=10% Similarity=0.106 Sum_probs=42.3
Q ss_pred CcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeecC
Q 005349 343 GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQP 420 (701)
Q Consensus 343 Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~~ 420 (701)
|+ |+.||+.++ +.++++..+. .+..-.++..+..|++++.||+++.||..+....-.++.
T Consensus 455 g~-l~A~D~~tG--------------~~~W~~~~~~---~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 455 GK-LIAWDPVKQ--------------QAAWEVPYVT---IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EE-EEEEETTTT--------------EEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ee-EEEEECCCC--------------CeEeEccCCC---CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 44 788888877 6666665432 233446777888999999999999999988544434443
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.19 E-value=0.02 Score=66.68 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=67.8
Q ss_pred CCCeEEEEECCCCcEEEEeec--C-----------------------------CCCeEEEEEcCCCCEEEEEeCCCc---
Q 005349 299 NVGMVIVRDIVSKNVIAQFRA--H-----------------------------KSPISALCFDPSGILLVTASVQGH--- 344 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~--H-----------------------------~~~Is~laFSPdG~lLaTaS~dGt--- 344 (701)
.+|.|+.||..+++.+-.+.. + ......++|+|++.+|..++.+|+
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWD 260 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccc
Confidence 357888888888888776652 1 111235899999899998887753
Q ss_pred ---------------EEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC-------ccc--EEEEEEcCCCC---EEEE
Q 005349 345 ---------------NINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT-------NAV--IQDISFSDDSN---WIMI 397 (701)
Q Consensus 345 ---------------~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~-------~a~--I~~iaFSpDg~---~lAs 397 (701)
.|..||..++ +.++.++...+ ... +.++.+ +|+ .|+.
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG--------------~~~W~~~~~~~d~wd~~~~~~~~l~d~~~--~G~~~~~v~~ 324 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTG--------------EYVWHYQTTPGDAWDYTATQHMILAELPI--DGKPRKVLMQ 324 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTC--------------CEEEEEESSTTCCSCCCCCSCEEEEEEEE--TTEEEEEEEE
T ss_pred cCCCCCCCCCceeeeeEEEEEccCC--------------ceeEeeecCCcccccccCCCCcEEEeecc--CCcEEEEEEE
Confidence 3889999988 56666653211 011 223333 676 7999
Q ss_pred EeCCCcEEEEecCCCC
Q 005349 398 SSSRGTSHLFAINPLG 413 (701)
Q Consensus 398 gS~dgTI~Iwdl~~~g 413 (701)
++.+|.+++||..+..
T Consensus 325 ~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 325 APKNGFFYVIDRATGE 340 (689)
T ss_dssp CCTTSEEEEEETTTCC
T ss_pred ECCCCeEEEEECCCCC
Confidence 9999999999997643
No 233
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.19 E-value=0.0012 Score=72.86 Aligned_cols=98 Identities=8% Similarity=0.036 Sum_probs=73.4
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV---------QGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~---------dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
+.|.++|..+++.+.+++.-..| .|+|||||++|..+.. ++..|.++|..+. +.+
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~--------------~vv 162 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF--------------LPI 162 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--------------CEE
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC--------------cEE
Confidence 79999999999999999966667 7999999998888763 1234999999886 344
Q ss_pred EEEecc-C----CcccEEEEEEcCCCCEEEEEeC--CCcEEEEecCCCCC
Q 005349 372 YRLQRG-L----TNAVIQDISFSDDSNWIMISSS--RGTSHLFAINPLGG 414 (701)
Q Consensus 372 ~~l~rG-~----~~a~I~~iaFSpDg~~lAsgS~--dgTI~Iwdl~~~g~ 414 (701)
.++.-+ . ....-..++|||||++|.++.. +++|.|.|+.+...
T Consensus 163 ~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv 212 (426)
T 3c75_H 163 ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF 212 (426)
T ss_dssp EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE
Confidence 443211 0 0011346889999999999874 57899999987543
No 234
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.14 E-value=0.014 Score=67.77 Aligned_cols=95 Identities=6% Similarity=0.000 Sum_probs=63.9
Q ss_pred CCeEEEEECCCCcE--EEEeecCCCCeEEEEEcCCCCEEEEEeCCC-c-EEEEEEcCCCCCCCCCccCCCCceeEEEEEe
Q 005349 300 VGMVIVRDIVSKNV--IAQFRAHKSPISALCFDPSGILLVTASVQG-H-NINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (701)
Q Consensus 300 dG~V~IwDl~s~~~--i~~~~~H~~~Is~laFSPdG~lLaTaS~dG-t-~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~ 375 (701)
.+.|.++|+.++.. ...|..|...+. .|+++|..|+....++ . .|++||+..+ ....+.
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~---------------~~~~l~ 366 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK---------------RVREVA 366 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC---------------EEEEEC
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC---------------eeEEee
Confidence 36788899987654 345667776665 8999999887766543 2 3788887633 223332
Q ss_pred ccCCcccEEEEEEcCCCCEEEEEeCC----CcEEEEecCCC
Q 005349 376 RGLTNAVIQDISFSDDSNWIMISSSR----GTSHLFAINPL 412 (701)
Q Consensus 376 rG~~~a~I~~iaFSpDg~~lAsgS~d----gTI~Iwdl~~~ 412 (701)
-. ....+..+++++|++.|+....+ +++..||+...
T Consensus 367 ~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 367 LP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp CS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred cC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 11 12347788899999887766555 78999988653
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.13 E-value=0.015 Score=66.42 Aligned_cols=102 Identities=11% Similarity=-0.002 Sum_probs=67.6
Q ss_pred CeEEEEECCC--CcE-EEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCC---CCCCCccCCCCceeEEEEE
Q 005349 301 GMVIVRDIVS--KNV-IAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGI---LGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 301 G~V~IwDl~s--~~~-i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~---~~~~s~~~~~~~~~~l~~l 374 (701)
+.|.|.|..+ ++. +..+..-. ...++.|+|||+++..++.....|.++|+.+.. .+.. ........++
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l-----~~~~~v~~~v 327 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA-----DPRSAVVAEP 327 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-----CGGGGEEECC
T ss_pred CcEEEEeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc-----CcccceEEEc
Confidence 4599999998 555 66666332 335689999999988888766669999997530 0000 0000122344
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
.-|. .-..++|+|||....+.-.|++|-+|++.+
T Consensus 328 ~vG~---gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 328 ELGL---GPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp BCCS---CEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCC---CcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 3343 257899999994445666799999999976
No 236
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.92 E-value=0.055 Score=62.74 Aligned_cols=57 Identities=14% Similarity=-0.031 Sum_probs=41.4
Q ss_pred cEEEEEECCCCcEEEEEecCCCE------------EEEEec-CCEEEEEeCCEEEEEECCCCceeEEEec
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPI------------YSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V------------~sV~~s-~~~LaVa~~~~I~iwDl~t~~~~~tl~t 173 (701)
+.|.-+|++||+.+-+++..... ..+.+. .++++.+.+++|+++|+.|++.+.+...
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 67888999999999888653211 223333 4444446689999999999999888764
No 237
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=96.85 E-value=0.14 Score=52.25 Aligned_cols=92 Identities=11% Similarity=0.030 Sum_probs=56.3
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEEcCCCCCCCCCccCCCCceeEEEEEe
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-----HNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG-----t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~ 375 (701)
+.|..+|..+++..... +......++|+|||+.|..++... ..|.+|++... .......+.
T Consensus 169 ~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~------------~l~~~~~~~ 234 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG------------ALHDRRHFA 234 (305)
T ss_dssp EEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT------------EEEEEEEEE
T ss_pred CeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC------------CccCCeEEE
Confidence 56777887666544333 334567899999999887777652 34899998754 000111111
Q ss_pred ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q 005349 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAI 409 (701)
Q Consensus 376 rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl 409 (701)
.. .......|++++||++.++ +.+ .|++|+.
T Consensus 235 ~~-~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~ 265 (305)
T 3dr2_A 235 SV-PDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS 265 (305)
T ss_dssp CC-SSSCCCSEEECTTSCEEEC-CSS-EEEEECT
T ss_pred EC-CCCCCCeEEECCCCCEEEe-cCC-cEEEECC
Confidence 10 1122457899999995544 444 4888876
No 238
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.81 E-value=0.047 Score=56.27 Aligned_cols=96 Identities=8% Similarity=-0.090 Sum_probs=66.5
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe---
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ--- 375 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~--- 375 (701)
.++.+.+||..+.+.+.+|+.-... ..+.+||+.|..++..++ |.++|..+. +.+.++.
T Consensus 114 ~~~~v~V~D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~vSdGs~~-l~~iDp~T~--------------~v~~~I~V~~ 175 (268)
T 3nok_A 114 TEGLLFTWSGMPPQRERTTRYSGEG---WGLCYWNGKLVRSDGGTM-LTFHEPDGF--------------ALVGAVQVKL 175 (268)
T ss_dssp SSCEEEEEETTTTEEEEEEECSSCC---CCEEEETTEEEEECSSSE-EEEECTTTC--------------CEEEEEECEE
T ss_pred cCCEEEEEECCcCcEEEEEeCCCce---eEEecCCCEEEEECCCCE-EEEEcCCCC--------------eEEEEEEeCC
Confidence 4678999999999999999854333 233467888888776654 899998776 2333322
Q ss_pred ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 005349 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 376 rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g 413 (701)
+|..-..+..+.|. ||+..|..-.+++|.+-|..+..
T Consensus 176 ~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 176 RGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGT 212 (268)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB
T ss_pred CCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc
Confidence 23222236778887 88777777678889988877643
No 239
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.66 E-value=0.094 Score=60.76 Aligned_cols=85 Identities=13% Similarity=0.216 Sum_probs=58.8
Q ss_pred CCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
..+|.|..||+.+++.+-+++.+. ++....+...|.+++.++.||. +++||..++ +.+++++-+
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~-l~a~d~~tG--------------~~l~~~~~~ 498 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQ-MHAYSADKG--------------EALWQFEAQ 498 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECS
T ss_pred CccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCccc-chhhhhhcC--------------hhheEecCC
Confidence 356899999999999988877543 3333445567888888999997 899999988 666666543
Q ss_pred CCcccEEEEEEcCCCC-EEEEEe
Q 005349 378 LTNAVIQDISFSDDSN-WIMISS 399 (701)
Q Consensus 378 ~~~a~I~~iaFSpDg~-~lAsgS 399 (701)
.. ..-.-+.+..||+ |++.++
T Consensus 499 ~~-~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 499 SG-IVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp SC-CCSCCEEEEETTEEEEEEEE
T ss_pred CC-cccCceEEEECCEEEEEEEe
Confidence 21 1112355667887 555555
No 240
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.64 E-value=0.076 Score=54.53 Aligned_cols=96 Identities=7% Similarity=0.035 Sum_probs=65.1
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe---
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ--- 375 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~--- 375 (701)
.++.+.+||..+.+.+.+|+.-... ..+.+||+.|..++..++ |.++|..+. ..+.++.
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~-i~~iDp~T~--------------~v~~~I~V~~ 166 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPV-LRFLDPESL--------------TPVRTITVTA 166 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSSE-EEEECTTTC--------------SEEEEEECEE
T ss_pred eCCEEEEEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCCe-EEEEcCCCC--------------eEEEEEEecc
Confidence 4678999999999999999854333 344467777777665544 888888775 2333322
Q ss_pred ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 005349 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 376 rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g 413 (701)
.|.....+..+.|. ||+..|..-.+++|.+.|..+..
T Consensus 167 ~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~ 203 (262)
T 3nol_A 167 HGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGK 203 (262)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCB
T ss_pred CCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCc
Confidence 12221236678887 88877777678889988877643
No 241
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.62 E-value=0.16 Score=57.63 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=35.1
Q ss_pred EEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 346 INIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 346 I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
+..||+.++ +.++++.-+. .+....+...+..+..++.||++++||..+....-.+
T Consensus 446 l~a~D~~tG--------------~~~W~~~~~~---~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 446 IRAFDLTTG--------------KAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp EEEECTTTC--------------CEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCC--------------CEEEEecCCC---CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 677777766 4555554332 1233334445667788999999999999875433333
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.52 E-value=0.18 Score=51.13 Aligned_cols=92 Identities=12% Similarity=0.150 Sum_probs=56.5
Q ss_pred CCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
++.|..+|. +++.+..+......+.++.++++|.+.+ ++.+|. +..||. ++ ..++.+.-+
T Consensus 234 ~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~gg-l~~~d~-~g--------------~~~~~~~~~-- 293 (330)
T 3hxj_A 234 DGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYF-GSYDGH-LYAINP-DG--------------TEKWNFETG-- 293 (330)
T ss_dssp TTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEE-ECTTCE-EEEECT-TS--------------CEEEEEECS--
T ss_pred CCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEE-ecCCCC-EEEECC-CC--------------cEEEEEEcC--
Confidence 345555553 4455555555544455677888887655 556665 788885 44 344444322
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
...+.++.+.+||+. ..++.+|.+++......
T Consensus 294 ~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 294 SWIIATPVIDENGTI-YFGTRNGKFYALFNLEH 325 (330)
T ss_dssp SCCCSCCEECTTCCE-EEECTTSCEEEEEC---
T ss_pred CccccceEEcCCCEE-EEEcCCCeEEEEecccc
Confidence 234677888888875 46889999999887643
No 243
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.51 E-value=0.35 Score=51.71 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=63.5
Q ss_pred CCCeEEEEEC-------CCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEE
Q 005349 299 NVGMVIVRDI-------VSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHL 371 (701)
Q Consensus 299 ~dG~V~IwDl-------~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l 371 (701)
.+|.+..|++ .+.+.+++|.-- +.+-.+..++....|..+-.+ .-|..++..+. .+. ....+
T Consensus 151 k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~-~~~--------~~~~v 219 (355)
T 3amr_A 151 KEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEED-EAIWKFSAEPD-GGS--------NGTVI 219 (355)
T ss_dssp SSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETT-TEEEEEECSTT-SCS--------CCEEE
T ss_pred CCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEeccc-ceEEEEeCCcC-CCC--------CceEE
Confidence 3477777777 234677788754 467788899987778888887 32444443332 000 11333
Q ss_pred EEEeccCCcccEEEEEE--cCCCC-EEEEEe-CCCcEEEEecC
Q 005349 372 YRLQRGLTNAVIQDISF--SDDSN-WIMISS-SRGTSHLFAIN 410 (701)
Q Consensus 372 ~~l~rG~~~a~I~~iaF--SpDg~-~lAsgS-~dgTI~Iwdl~ 410 (701)
..+.-+.-.+.+..|++ .+|++ ||.++| .+.+.+|||..
T Consensus 220 ~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 220 DRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 33322333456888988 67777 676666 57799999996
No 244
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.47 E-value=0.31 Score=49.48 Aligned_cols=96 Identities=8% Similarity=-0.017 Sum_probs=64.9
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe---
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ--- 375 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~--- 375 (701)
.++.+.+||..+.+.+.+|+.-..+ ..+.+||..|..+..+++ |.++|..+. ..+.++.
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~-l~~iDp~t~--------------~~~~~I~V~~ 144 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAV-IRKLDPDTL--------------QQVGSIKVTA 144 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSE-EEEECTTTC--------------CEEEEEECEE
T ss_pred eCCEEEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCe-EEEEeCCCC--------------eEEEEEEEcc
Confidence 4578999999999999999854444 233466776766666655 899998776 2333332
Q ss_pred ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCC
Q 005349 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 376 rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g 413 (701)
+|..-..+..+.|. +|+..|..-.+..|.+-|..+..
T Consensus 145 ~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 145 GGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGK 181 (243)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB
T ss_pred CCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCC
Confidence 22211236677776 88877777677888888887654
No 245
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.39 E-value=0.092 Score=59.91 Aligned_cols=83 Identities=25% Similarity=0.417 Sum_probs=56.7
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
..|.|..||+.+++.+-+++.+. ++..-.+...|.++..++.||+ ++.||..++ +.+++++-+.
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~-l~A~D~~tG--------------~~lW~~~~~~ 527 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGY-FKAFDAKSG--------------KELWKFQTGS 527 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECSS
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCc-EEEEECCCC--------------CEEEEecCCC
Confidence 46899999999999888776443 2221112224667777999997 899999998 7788875432
Q ss_pred CcccEE--EEEEcCCCC-EEEEEeC
Q 005349 379 TNAVIQ--DISFSDDSN-WIMISSS 400 (701)
Q Consensus 379 ~~a~I~--~iaFSpDg~-~lAsgS~ 400 (701)
.|. -+.|..||+ |+++.+.
T Consensus 528 ---g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 528 ---GIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp ---CCCSCCEEEEETTEEEEEEEEC
T ss_pred ---CcccCceEEEECCEEEEEEEcc
Confidence 232 367778887 5555443
No 246
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=96.32 E-value=0.016 Score=67.16 Aligned_cols=109 Identities=9% Similarity=0.118 Sum_probs=69.8
Q ss_pred CCCeEEEEECCCCcEEEE-eecCCCCeEEEEEcCCCCEEEEEeCCC------------cEEEEEEcCCCCCCCCCccCCC
Q 005349 299 NVGMVIVRDIVSKNVIAQ-FRAHKSPISALCFDPSGILLVTASVQG------------HNINIFKIIPGILGTSSACDAG 365 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~-~~~H~~~Is~laFSPdG~lLaTaS~dG------------t~I~Iwdl~~~~~~~~s~~~~~ 365 (701)
....|+|||+.+++.+.. +... ....++|+ ||+.|+.++.++ ..|.+|++.+. .
T Consensus 153 ~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~----------~ 219 (693)
T 3iuj_A 153 DWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTA----------Q 219 (693)
T ss_dssp CEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSC----------G
T ss_pred ceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCC----------c
Confidence 346899999999986543 2221 12467899 999999988773 34788888764 1
Q ss_pred CceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCC----CcEEEEecCCCC-CceeecCC
Q 005349 366 TSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR----GTSHLFAINPLG-GSVNFQPT 421 (701)
Q Consensus 366 ~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d----gTI~Iwdl~~~g-~~~~~~~H 421 (701)
.....++... +.+...+.+++|||||++|+..+.+ ..|+++++.... ....+..+
T Consensus 220 ~~~~~v~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 220 EDDRLVFGAI-PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp GGCEEEESCS-GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred ccceEEEecC-CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 1113444321 1012236789999999999765542 478999987654 34455443
No 247
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=96.23 E-value=0.042 Score=57.56 Aligned_cols=109 Identities=14% Similarity=0.226 Sum_probs=63.7
Q ss_pred CCeEEEEECCCCcEEEEeecC------CCCeEEEEEcCC-CCEEEEEe---CCCcEEEEEEcCCCCC-----CCCCc-cC
Q 005349 300 VGMVIVRDIVSKNVIAQFRAH------KSPISALCFDPS-GILLVTAS---VQGHNINIFKIIPGIL-----GTSSA-CD 363 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H------~~~Is~laFSPd-G~lLaTaS---~dGt~I~Iwdl~~~~~-----~~~s~-~~ 363 (701)
++.|.+||+.+++.+..+..+ ...+..|+|+|+ |.++++-+ .++. |.+||+.++.. +..+. ..
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~-i~v~d~~~g~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA-LIRVDLQTGLAARVLQGYPGIAPE 170 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE-EEEEETTTCCEEEECTTCTTTSCC
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe-EEEEECCCCCEEEEecCCCccccc
Confidence 468999999999877776532 245689999986 55556655 4554 89999876521 00000 00
Q ss_pred CC---CceeEEEEEec-cC---CcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 364 AG---TSYVHLYRLQR-GL---TNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 364 ~~---~~~~~l~~l~r-G~---~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
.. .....++.... |. ....+..|+|||||++|..+..+++ +||.+.
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~ 223 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIK 223 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEE
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEE
Confidence 00 00001100000 00 0012688999999999998887765 666654
No 248
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=96.15 E-value=0.029 Score=57.55 Aligned_cols=85 Identities=11% Similarity=-0.064 Sum_probs=56.7
Q ss_pred cCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec
Q 005349 297 ADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r 376 (701)
....+.|..||. +++ +..+..+...+..++|+|+|+++++...++. |.+|+.. + ....+.....
T Consensus 63 d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~-v~~~~~~-g------------~~~~~~~~~~ 126 (305)
T 3dr2_A 63 DLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRA-ITRSDAD-G------------QAHLLVGRYA 126 (305)
T ss_dssp ETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTE-EEEECTT-S------------CEEEEECEET
T ss_pred ECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCE-EEEECCC-C------------CEEEEEeccC
Confidence 345678999998 444 4566667778999999999997776555444 7888864 3 1122222212
Q ss_pred cCCcccEEEEEEcCCCCEEEE
Q 005349 377 GLTNAVIQDISFSDDSNWIMI 397 (701)
Q Consensus 377 G~~~a~I~~iaFSpDg~~lAs 397 (701)
+.....+.++++++||++.++
T Consensus 127 ~~~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 127 GKRLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp TEECSCCCCEEECTTSCEEEE
T ss_pred CCccCCCCCEEECCCCCEEEe
Confidence 221123678999999998886
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=95.99 E-value=0.24 Score=56.55 Aligned_cols=111 Identities=12% Similarity=0.068 Sum_probs=69.4
Q ss_pred CCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC--------------cEEEEEEcCCCC----CCCC
Q 005349 298 DNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG--------------HNINIFKIIPGI----LGTS 359 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG--------------t~I~Iwdl~~~~----~~~~ 359 (701)
..++.|.+.|..+.+.+.++.--.. -..++++|||+++.+++.+. ..|.|+|..... .|..
T Consensus 172 ~~~~~vtvID~~t~~v~~qI~Vgg~-pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~ 250 (595)
T 1fwx_A 172 NYVNVFTAVDADKWEVAWQVLVSGN-LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 250 (595)
T ss_dssp GEEEEEEEEETTTTEEEEEEEESSC-CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred ccCceEEEEECCCCeEEEEEEeCCC-ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence 4568899999999999999874322 35688999999999999664 336666654320 0100
Q ss_pred Cc-------cCCCCceeE-EEEEeccCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCC
Q 005349 360 SA-------CDAGTSYVH-LYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPL 412 (701)
Q Consensus 360 s~-------~~~~~~~~~-l~~l~rG~~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~~ 412 (701)
.. +........ +..+.-|.. ..++.|||||+++.+++ .+.+|.++|+.+.
T Consensus 251 ~~i~~V~VID~~~~~~~~~~~~Ipvg~~---PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 251 QELNGVKVVDGRKEASSLFTRYIPIANN---PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EEETTEEEEECSGGGCCSSEEEEEEESS---CCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred eEECcEEEEeCcccCCceeEEEEecCCC---ceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 00 000000001 112211211 34799999999988766 5889999999854
No 250
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.98 E-value=2.1 Score=45.49 Aligned_cols=201 Identities=12% Similarity=0.118 Sum_probs=117.1
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEEEEe-cCCEEEEEeCCEEEEEECCCC-ceeEEEecCCCccCCCCCCCCCcccceee
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRC-SSRVVAICQAAQVHCFDAATL-EIEYAILTNPIVMGHPSAGGIGIGYGPLA 194 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~sV~~-s~~~LaVa~~~~I~iwDl~t~-~~~~tl~t~~~~~~~~~~~~~~~~~~piA 194 (701)
++++++|+++.+.+++..++..|.-=+| +.+.|+...+..|+-|++... +....+.-+++-.
T Consensus 87 ~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~---------------- 150 (365)
T 2xzh_A 87 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA---------------- 150 (365)
T ss_dssp TEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGT----------------
T ss_pred CeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcc----------------
Confidence 7799999999999999999988876666 789999999999999998742 3333444443211
Q ss_pred eccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchh-ceeEEcCCccceecccccccccCCC
Q 005349 195 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA-AGIVNLGDLGYKKLSQYCSEFLPDS 273 (701)
Q Consensus 195 ls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la-~gl~~lGd~g~~~ls~y~~~~~p~~ 273 (701)
+.+.+-|..++...| ++ .|+..
T Consensus 151 -~~QIInY~~d~~~kW------------------------------------~~l~GI~~-------------------- 173 (365)
T 2xzh_A 151 -GCQIINYRTDAKQKW------------------------------------LLLTGISA-------------------- 173 (365)
T ss_dssp -TCEEEEEEECTTSCE------------------------------------EEEEEEEE--------------------
T ss_pred -cceEEEEEECCCCCE------------------------------------EEEEeEec--------------------
Confidence 123455543221111 11 01110
Q ss_pred CCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCC---CCEEEEEeC--CCcEEEE
Q 005349 274 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS---GILLVTASV--QGHNINI 348 (701)
Q Consensus 274 ~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd---G~lLaTaS~--dGt~I~I 348 (701)
.++.-.|.+.+|..+.+ .-+.+.+|...-..+.+.-+ .++|+-|.. .|..++|
T Consensus 174 ---------------------~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhI 231 (365)
T 2xzh_A 174 ---------------------QQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 231 (365)
T ss_dssp ---------------------ETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEE
T ss_pred ---------------------cCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 00112488999998765 45677888644333322211 225555544 2334889
Q ss_pred EEcCCCCCCCCCccCCCCceeEEEEEeccCC-ccc-EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 349 FKIIPGILGTSSACDAGTSYVHLYRLQRGLT-NAV-IQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 349 wdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~-~a~-I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
-++.....+... -.++..++.--.. ..+ -.++..|+--..+..-+.-|-+|+||+++......-
T Consensus 232 iEi~~~~~~~~~------f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 232 IEVGTPPTGNQP------FPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp EECSSCCTTCCC------CCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEcCCCCCCCCC------cccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 888432111110 1122223221110 011 345777776678888999999999999987655433
No 251
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=95.94 E-value=0.00052 Score=73.65 Aligned_cols=59 Identities=5% Similarity=-0.013 Sum_probs=40.5
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 005349 293 HFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (701)
Q Consensus 293 ~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~ 354 (701)
.+..+..+|.|+.||..+++.+..++. .++.+..+..+|+++++++.||+ |+.||..++
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~-l~a~d~~tG 69 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGS-LYTLGSKNN 69 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCC-EEEC-----
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCE-EEEEECCCC
Confidence 334456789999999999999988887 56667777789988998889998 899999876
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.53 E-value=1.2 Score=50.82 Aligned_cols=24 Identities=4% Similarity=-0.000 Sum_probs=19.8
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCC
Q 005349 390 DDSNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 390 pDg~~lAsgS~dgTI~Iwdl~~~g 413 (701)
..+..|..++.||.++.||..+..
T Consensus 482 tagg~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 482 TAGDLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCC
T ss_pred ecCCEEEEECCCCeEEEEECCCCC
Confidence 356778889999999999998754
No 253
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.51 E-value=3.8 Score=45.09 Aligned_cols=200 Identities=12% Similarity=0.121 Sum_probs=118.8
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEEEEe-cCCEEEEEeCCEEEEEECCCC-ceeEEEecCCCccCCCCCCCCCcccceee
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRC-SSRVVAICQAAQVHCFDAATL-EIEYAILTNPIVMGHPSAGGIGIGYGPLA 194 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~sV~~-s~~~LaVa~~~~I~iwDl~t~-~~~~tl~t~~~~~~~~~~~~~~~~~~piA 194 (701)
++++++|+++.+.+++..|+..|.-=+| +.+.|+...+..||-|++... .....+.-+++-.
T Consensus 86 ~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~---------------- 149 (494)
T 1bpo_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA---------------- 149 (494)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGT----------------
T ss_pred CeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcc----------------
Confidence 7899999999999999999888765566 789999999999999999742 2333344343211
Q ss_pred eccceEEEcCCCceecCCCccCCcccccccccccccCCCcceeehhhhchhchh-ceeEEcCCccceecccccccccCCC
Q 005349 195 VGPRWLAYSGSPVVVSNDGRVNPQHLMQSRSFSGFASNGSRVAHYAKESSKHLA-AGIVNLGDLGYKKLSQYCSEFLPDS 273 (701)
Q Consensus 195 ls~r~LAya~~~~~~s~~gr~sp~~l~~s~~~~~~~s~g~~v~~~a~~~sk~la-~gl~~lGd~g~~~ls~y~~~~~p~~ 273 (701)
+...+.|..++...| ++ .|+..
T Consensus 150 -~~QIInY~~d~~~kW------------------------------------~~l~GI~~-------------------- 172 (494)
T 1bpo_A 150 -GCQIINYRTDAKQKW------------------------------------LLLTGISA-------------------- 172 (494)
T ss_dssp -TCEEEEEEECTTSSE------------------------------------EEEEEEEE--------------------
T ss_pred -cceEEEEEECCCCCe------------------------------------EEEEeecc--------------------
Confidence 123455543221111 11 01100
Q ss_pred CCccccccCCCCCCCcccccccccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCC---CCEEEEEeCC--CcEEEE
Q 005349 274 QNSLQSAIPGGKSNGTVNGHFPDADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS---GILLVTASVQ--GHNINI 348 (701)
Q Consensus 274 ~~s~~~a~~~~~~~g~~~~~~~~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd---G~lLaTaS~d--Gt~I~I 348 (701)
.++.-.|.+.+|..+.+ .-+.+.+|...-..+.+.-+ .++|+-+... |..++|
T Consensus 173 ---------------------~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi 230 (494)
T 1bpo_A 173 ---------------------QQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (494)
T ss_dssp ---------------------ETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred ---------------------cCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 00112488999998765 44677888655444433322 2356666553 334899
Q ss_pred EEcCCCCCCCCCccCCCCceeEEEEEeccCCc-cc-EEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCcee
Q 005349 349 FKIIPGILGTSSACDAGTSYVHLYRLQRGLTN-AV-IQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 417 (701)
Q Consensus 349 wdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~-a~-I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~ 417 (701)
-++.....+... -.++..++.--... .+ -.++..|+.-..+..-+.-|-+|+||+++......
T Consensus 231 ~Ei~~~~~~~~~------f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 231 IEVGTPPTGNQP------FPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp EECSCCCTTCCC------CCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEcCCCccCCCC------ccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence 988543111110 11222232211100 01 34577888777888999999999999998655543
No 254
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.49 E-value=0.31 Score=55.29 Aligned_cols=82 Identities=11% Similarity=0.079 Sum_probs=53.7
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
..|.|..||+.+++.+-+++... ++....+...|.++..++.||+ |+.||..++ +.+++++-+.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~-l~a~D~~tG--------------~~lw~~~~~~ 505 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGY-LKALDNKDG--------------KELWNFKMPS 505 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSE-EEEEETTTC--------------CEEEEEECSS
T ss_pred CCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCe-EEEEECCCC--------------CEEEEEeCCC
Confidence 46899999999999988876432 2222333344566677889987 899999988 6777775442
Q ss_pred CcccEEEEEEcCCCCEEEE
Q 005349 379 TNAVIQDISFSDDSNWIMI 397 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAs 397 (701)
.. .-.-+.|..||+.++.
T Consensus 506 ~~-~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 506 GG-IGSPMTYSFKGKQYIG 523 (571)
T ss_dssp CC-CSCCEEEEETTEEEEE
T ss_pred Cc-EeeeEEEEECCEEEEE
Confidence 11 1122446677764443
No 255
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=95.47 E-value=0.11 Score=52.76 Aligned_cols=87 Identities=13% Similarity=0.156 Sum_probs=61.6
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
.++.|..+|.. ++.+..+..+...+.++.++++|.+++.. +. +..|| .++ ..++++..+
T Consensus 155 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~-l~~~d-~~g--------------~~~~~~~~~- 213 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DK-VYAIN-PDG--------------TEKWNFYAG- 213 (330)
T ss_dssp TTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SS-EEEEC-TTS--------------CEEEEECCS-
T ss_pred CCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CE-EEEEC-CCC--------------cEEEEEccC-
Confidence 34678888888 77777777666778889999999977765 55 78888 554 344554322
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005349 379 TNAVIQDISFSDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwd 408 (701)
...+.++++.+||+.. .++.++.+..++
T Consensus 214 -~~~~~~~~~~~~g~l~-v~t~~~gl~~~~ 241 (330)
T 3hxj_A 214 -YWTVTRPAISEDGTIY-VTSLDGHLYAIN 241 (330)
T ss_dssp -SCCCSCCEECTTSCEE-EEETTTEEEEEC
T ss_pred -CcceeceEECCCCeEE-EEcCCCeEEEEC
Confidence 2347788898888654 566677787775
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.86 E-value=3.6 Score=46.69 Aligned_cols=55 Identities=11% Similarity=0.039 Sum_probs=40.2
Q ss_pred EEEEECCCCcEEEEEecCCCE----------EEEEec-CCEEEEEeCCEEEEEECCCCceeEEEec
Q 005349 119 VHFYSLRSQSYVHMLKFRSPI----------YSVRCS-SRVVAICQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 119 VriWdl~tg~~v~tL~f~s~V----------~sV~~s-~~~LaVa~~~~I~iwDl~t~~~~~tl~t 173 (701)
|.-+|++||+.+-++...... ..+.+. .++++...++.|+.+|+.|++.+.+...
T Consensus 80 v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 80 LFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred EEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 788899999999888764321 223333 4455556789999999999998877654
No 257
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=94.45 E-value=4.2 Score=40.13 Aligned_cols=98 Identities=9% Similarity=0.035 Sum_probs=53.9
Q ss_pred CeEEEEECCCCcEEEEe-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 301 GMVIVRDIVSKNVIAQF-RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~-~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
+.|..+++..... ..+ .........|+|+|++..|..++.....|.++|.... .. ..+..+.
T Consensus 146 ~~I~~~~~dg~~~-~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~--------------~~-~~~~~~~- 208 (267)
T 1npe_A 146 PKIETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP--------------GR-RKVLEGL- 208 (267)
T ss_dssp CEEEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE--------------EE-EEEEECC-
T ss_pred cEEEEEecCCCCc-EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC--------------ce-EEEecCC-
Confidence 4455555543221 122 1222456889999998777666666566899987532 11 1221221
Q ss_pred cccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCCceee
Q 005349 380 NAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~~g~~~~~ 418 (701)
..-..|++. +.+|..+. ..++|.+++.........+
T Consensus 209 -~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 209 -QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp -CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred -CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence 123566654 44555444 5678988888654333333
No 258
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=93.98 E-value=6.4 Score=40.45 Aligned_cols=96 Identities=17% Similarity=0.079 Sum_probs=55.3
Q ss_pred CCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG-t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
.+.|.+.|+........+...-.....|+++|++..|.-++... ..|..+++.-. .. ..+-..
T Consensus 98 ~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-------------~~--~~~~~~- 161 (316)
T 1ijq_A 98 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------------DI--YSLVTE- 161 (316)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------------CE--EEEECS-
T ss_pred CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-------------Ce--EEEEEC-
Confidence 35677777765443333333334668999999655444444432 23666665321 11 122111
Q ss_pred CcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCC
Q 005349 379 TNAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 411 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~ 411 (701)
.-..-..|+|+++++.|..+. ..++|..++++.
T Consensus 162 ~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 112367999999877766554 456899999863
No 259
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=93.81 E-value=4.8 Score=45.91 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=40.3
Q ss_pred cEEEEEEC-CCCcEEEEEecCCC------------EEEEEe---cCC----EEEEEeCCEEEEEECCCCceeEEEec
Q 005349 117 TVVHFYSL-RSQSYVHMLKFRSP------------IYSVRC---SSR----VVAICQAAQVHCFDAATLEIEYAILT 173 (701)
Q Consensus 117 ~tVriWdl-~tg~~v~tL~f~s~------------V~sV~~---s~~----~LaVa~~~~I~iwDl~t~~~~~tl~t 173 (701)
+.|.-+|+ +||+.+-+.+.... ...+.+ ..+ +++...+++++.+|+.|++.+.....
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~ 149 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVEN 149 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecC
Confidence 55777899 99999988876432 123344 233 55556789999999999998877653
No 260
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=92.39 E-value=0.38 Score=56.31 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=59.1
Q ss_pred CCeEEEEECCCC-cEEE-EeecCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 300 VGMVIVRDIVSK-NVIA-QFRAHKSPISALCFDPSGILLVTASVQG----HNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 300 dG~V~IwDl~s~-~~i~-~~~~H~~~Is~laFSPdG~lLaTaS~dG----t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
...|+++|+.++ +.+. .+.. ....++|+|||+.|+..+.+. ..|.++++.++ ......++.
T Consensus 200 ~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~----------~~~~~lv~~ 266 (751)
T 2xe4_A 200 VYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL----------QSEDVCLYE 266 (751)
T ss_dssp CEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC----------GGGCEEEEE
T ss_pred eEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC----------chhcEEEEe
Confidence 346999999998 6321 1211 134588999999888777652 23566666543 001123333
Q ss_pred EeccCCcccEEEEEEcCCCCEEEEEeCC---CcEEEEecCCC
Q 005349 374 LQRGLTNAVIQDISFSDDSNWIMISSSR---GTSHLFAINPL 412 (701)
Q Consensus 374 l~rG~~~a~I~~iaFSpDg~~lAsgS~d---gTI~Iwdl~~~ 412 (701)
. .......++.|||||++|+..+.+ ..|.++|+...
T Consensus 267 ~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 267 E---HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp C---CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred c---CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 2 111235688999999999976643 34677777654
No 261
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=92.26 E-value=2.6 Score=41.63 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=60.0
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
..+.|.++|+..+.....+.........|+|+|++..|..++.....|.++++... ....+ +..+.
T Consensus 56 ~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~------------~~~~~--~~~~~ 121 (267)
T 1npe_A 56 SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT------------QRRVL--FDTGL 121 (267)
T ss_dssp TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEE--ECSSC
T ss_pred CCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC------------CEEEE--EECCC
Confidence 35789999988765444443333567899999986666655555455888887532 11111 11121
Q ss_pred CcccEEEEEEcCCCCEEEEEeC---CCcEEEEecC
Q 005349 379 TNAVIQDISFSDDSNWIMISSS---RGTSHLFAIN 410 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~---dgTI~Iwdl~ 410 (701)
..-..++++|++.+|..+.. .++|.+++++
T Consensus 122 --~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 122 --VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp --SSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred --CCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 23689999997666655543 3677777775
No 262
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=92.15 E-value=3.1 Score=47.59 Aligned_cols=96 Identities=11% Similarity=0.042 Sum_probs=54.1
Q ss_pred CeEEEEECCCCcEEEEeecCC---------CCeEEEEEcC-CCCEEEEEeCCC-------c---EEEEEEcCCCCCCCCC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHK---------SPISALCFDP-SGILLVTASVQG-------H---NINIFKIIPGILGTSS 360 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~---------~~Is~laFSP-dG~lLaTaS~dG-------t---~I~Iwdl~~~~~~~~s 360 (701)
..+..||..+..-......+. ..-.++.|+. +|++++.|+.++ . .|.+||..+.
T Consensus 369 ~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~------ 442 (656)
T 1k3i_A 369 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS------ 442 (656)
T ss_dssp SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC------
T ss_pred cceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC------
Confidence 468889988776433332221 1235666764 889999887542 1 3667776553
Q ss_pred ccCCCCceeEEEEEe-ccCCccc-EEEEEEcCCCCEEEEEeCC-----------CcEEEEecCC
Q 005349 361 ACDAGTSYVHLYRLQ-RGLTNAV-IQDISFSDDSNWIMISSSR-----------GTSHLFAINP 411 (701)
Q Consensus 361 ~~~~~~~~~~l~~l~-rG~~~a~-I~~iaFSpDg~~lAsgS~d-----------gTI~Iwdl~~ 411 (701)
. .. .+. ..+...+ -.+++..|||+.++.|+.+ .++.+||..+
T Consensus 443 ------~-W~--~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 443 ------P-NT--VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp ------C-EE--EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred ------C-ee--EEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 0 11 111 0111112 2345677899999998854 3566676643
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=91.90 E-value=15 Score=38.99 Aligned_cols=94 Identities=5% Similarity=-0.042 Sum_probs=51.2
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCc
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG-t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~ 380 (701)
.|.+.++........+.........|+++|++..|.-++... ..|..+++... ....+ ...+.
T Consensus 182 ~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~------------~~~~~--~~~~~-- 245 (386)
T 3v65_B 182 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS------------GRRII--ADTHL-- 245 (386)
T ss_dssp EEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC------------SCEEE--ECSSC--
T ss_pred eEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC------------CcEEE--EECCC--
Confidence 455555543332222333334568899999665555555443 44666665421 01111 11222
Q ss_pred ccEEEEEEcCCCCEEEEE-eCCCcEEEEecCC
Q 005349 381 AVIQDISFSDDSNWIMIS-SSRGTSHLFAINP 411 (701)
Q Consensus 381 a~I~~iaFSpDg~~lAsg-S~dgTI~Iwdl~~ 411 (701)
..-..|+|+|++..|..+ +..++|..+++..
T Consensus 246 ~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 246 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp SCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 236789999877666555 4466788888753
No 264
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=91.86 E-value=12 Score=37.93 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=43.3
Q ss_pred eEEEEEcCCCCEEEEEeC----------CCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCC
Q 005349 324 ISALCFDPSGILLVTASV----------QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN 393 (701)
Q Consensus 324 Is~laFSPdG~lLaTaS~----------dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~ 393 (701)
...|+++++|++.++... .+. |..||.. + .....+....|.....+.++++ .+++
T Consensus 231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~-v~~~d~~-G------------~~~~~~~~~~g~~~~~~~~~~~-~~g~ 295 (322)
T 2fp8_A 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPK-GIKFDEF-G------------NILEVIPLPPPFAGEHFEQIQE-HDGL 295 (322)
T ss_dssp EEEEEECTTSCEEEEEEEETTSSTTSCEEEE-EEEECTT-S------------CEEEEEECCTTTTTSCCCEEEE-ETTE
T ss_pred CCCeEECCCCCEEEEecCcccccccCCCccE-EEEECCC-C------------CEEEEEECCCCCccccceEEEE-eCCE
Confidence 677999999998887654 232 5555532 2 1122233333322233667777 4666
Q ss_pred EEEEEeCCCcEEEEecCCC
Q 005349 394 WIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 394 ~lAsgS~dgTI~Iwdl~~~ 412 (701)
..++....+.|.+|++...
T Consensus 296 L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 296 LYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEECSSCSEEEEEEC---
T ss_pred EEEeecCCCceEEEecccc
Confidence 6666667889999998643
No 265
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=90.89 E-value=19 Score=38.39 Aligned_cols=95 Identities=16% Similarity=0.091 Sum_probs=56.5
Q ss_pred CCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEe-CC-CcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTAS-VQ-GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS-~d-Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
.+.|.+.|+........+...-.....|+++|.+.+|.-++ .+ +. |..+++.-. ....+ +..+
T Consensus 180 ~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~-I~~~~~dG~------------~~~~~--~~~~ 244 (400)
T 3p5b_L 180 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGV------------DIYSL--VTEN 244 (400)
T ss_dssp TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC-EEEEETTSC------------SCEEE--ECSS
T ss_pred CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE-EEEEeCCCC------------ccEEE--EECC
Confidence 35677777776554444444445578999999655444444 32 33 666665421 11111 1112
Q ss_pred CCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCC
Q 005349 378 LTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 411 (701)
Q Consensus 378 ~~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~ 411 (701)
. ..-..|+|+++++.|..+. ..++|..++++.
T Consensus 245 l--~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 245 I--QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp C--SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred C--CceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 1 2368999999887776664 456888888864
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=90.81 E-value=19 Score=38.16 Aligned_cols=101 Identities=9% Similarity=-0.063 Sum_probs=55.8
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCc
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~ 380 (701)
+.|...|+........+...-..-+.|+|+|++..|.-++.....|..+|+... ..+.+ +..+.
T Consensus 225 ~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~------------~~~~~--~~~~~-- 288 (386)
T 3v65_B 225 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS------------HRKAV--ISQGL-- 288 (386)
T ss_dssp CEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC------------SCEEE--ECSSC--
T ss_pred CEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC------------eeEEE--EECCC--
Confidence 456666655433322222223446789999987777777776666888876432 11111 11121
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 381 a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
..-..|++ .++..+.+-...+.|..++.........+
T Consensus 289 ~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 289 PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 23577888 34455556666777877775443333333
No 267
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=90.50 E-value=1.4 Score=48.43 Aligned_cols=109 Identities=11% Similarity=0.148 Sum_probs=70.1
Q ss_pred CCCeEEEEECCCCcEEEEeecC----CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAH----KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H----~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
.+..||..++.....-+.++.- -..|..+..||+|++||..+.. .|.|-.+..+......... ... .....+
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~--~V~Vv~LP~~~~~~~~~~~-~~~-~q~~ty 114 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN--EIFVMEVPWGYSNVEDVSI-QDA-FQIFHY 114 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS--EEEEEECCTTCSCCCCHHH-HHT-TEEEEE
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC--eEEEEEecCccccCccccc-ccc-cceeEE
Confidence 3467888887754333344422 2367889999999999999876 3899999743211110000 001 112233
Q ss_pred eccC----CcccEEEEEEcC---CCCEEEEEeCCCcEEEEecCC
Q 005349 375 QRGL----TNAVIQDISFSD---DSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 375 ~rG~----~~a~I~~iaFSp---Dg~~lAsgS~dgTI~Iwdl~~ 411 (701)
+-|. ....|..+-|+| .+..|++-..|++|++||+..
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 3232 135599999998 456899999999999999986
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=90.24 E-value=2.4 Score=43.09 Aligned_cols=80 Identities=13% Similarity=0.211 Sum_probs=50.5
Q ss_pred CcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcC
Q 005349 311 KNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSD 390 (701)
Q Consensus 311 ~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSp 390 (701)
.+.+.+|..+ .....++|+|+|+++++-...++ |..||.... ....+..+ .....|+|++
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~-I~~~d~~g~---------------~~~~~~~~---~~p~gia~~~ 81 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGE-IVSITPDGN---------------QQIHATVE---GKVSGLAFTS 81 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTE-EEEECTTCC---------------EEEEEECS---SEEEEEEECT
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCe-EEEECCCCc---------------eEEEEeCC---CCceeEEEcC
Confidence 3456677654 35678999999997777656665 777775432 11122212 3488999999
Q ss_pred CCCEEEEEeCCCc--EEEEecC
Q 005349 391 DSNWIMISSSRGT--SHLFAIN 410 (701)
Q Consensus 391 Dg~~lAsgS~dgT--I~Iwdl~ 410 (701)
||+++++...... |..++..
T Consensus 82 dG~l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 82 NGDLVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp TSCEEEEEECTTSCEEEEEECT
T ss_pred CCcEEEEeccCCcceEEEEcCC
Confidence 9997766554334 4445543
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=89.19 E-value=23 Score=36.84 Aligned_cols=94 Identities=5% Similarity=-0.046 Sum_probs=53.3
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEEcCCCCCCCCCccCCCCceeEEEEE-eccC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG-HNINIFKIIPGILGTSSACDAGTSYVHLYRL-QRGL 378 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG-t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l-~rG~ 378 (701)
+.|.+.|+........+...-.....|+++|++..|.-++... ..|..+++... ... .+ ..+.
T Consensus 138 ~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-------------~~~--~~~~~~~ 202 (349)
T 3v64_C 138 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-------------GRR--IIADTHL 202 (349)
T ss_dssp TEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-------------SCE--ESCCSSC
T ss_pred CeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-------------CcE--EEEECCC
Confidence 4566777665433333333334568899999655444444433 33666665421 011 11 1111
Q ss_pred CcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCC
Q 005349 379 TNAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 411 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~ 411 (701)
..-..|+|+|++..|..+. ..++|..+++..
T Consensus 203 --~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 203 --FWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp --SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred --CCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 2367899998777666554 466788888763
No 270
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=88.04 E-value=22 Score=43.76 Aligned_cols=95 Identities=9% Similarity=0.135 Sum_probs=61.3
Q ss_pred CeEEEEECCCCcEEE-EeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 301 GMVIVRDIVSKNVIA-QFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 301 G~V~IwDl~s~~~i~-~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
.+|+|||+...+.+. .-..+. .|..+...-.|.+++.|+.... |.++..+.. ...+..+-|...
T Consensus 904 ~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~-------------~~~L~~~a~D~~ 968 (1158)
T 3ei3_A 904 STVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGDLMRS-VLLLAYKPM-------------EGNFEEIARDFN 968 (1158)
T ss_dssp TEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEESSBC-EEEEEEETT-------------TTEEEEEEECCS
T ss_pred CEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEEEEEhhhe-EEEEEEEcC-------------CCeEEEEEeecc
Confidence 478999988765443 111122 2333333345788888887754 666554432 135566666666
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
+..+.++.|=.++ .++.+..+|.++++..++
T Consensus 969 ~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 969 PNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred cccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 6668999986554 667789999999999876
No 271
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.60 E-value=7.1 Score=48.91 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=42.4
Q ss_pred cEEEEEECCCCcEEEEEecCCCEEEEEe-cCCEEEEEeCCEEEEEECCC
Q 005349 117 TVVHFYSLRSQSYVHMLKFRSPIYSVRC-SSRVVAICQAAQVHCFDAAT 164 (701)
Q Consensus 117 ~tVriWdl~tg~~v~tL~f~s~V~sV~~-s~~~LaVa~~~~I~iwDl~t 164 (701)
++++|+|+.+.+.+++..|+.+|.-=+| +.+.|+...+..|+.|++..
T Consensus 86 ~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~ 134 (1630)
T 1xi4_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134 (1630)
T ss_pred CeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCC
Confidence 7899999999999999999888765566 78999999999999999964
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=86.56 E-value=7.5 Score=39.36 Aligned_cols=103 Identities=8% Similarity=0.176 Sum_probs=69.8
Q ss_pred cccCCCCeEEEEECCCCcEEEEeecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE
Q 005349 295 PDADNVGMVIVRDIVSKNVIAQFRAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR 373 (701)
Q Consensus 295 ~~~~~dG~V~IwDl~s~~~i~~~~~H-~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~ 373 (701)
+..+.++.|...|.. ++.+..+.-. ....-.|++.++|.++++.-.++ .+.++++.... ....+..
T Consensus 43 aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~-~l~~~~v~~~~-----------~i~~~~~ 109 (255)
T 3qqz_A 43 STINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDY-AIYVISLTPNS-----------EVKILKK 109 (255)
T ss_dssp EEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTT-EEEEEEECTTC-----------CEEEEEE
T ss_pred EEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCC-cEEEEEcCCCC-----------eeeeeee
Confidence 334567889999998 8888887522 24677899999998777654554 48888886541 1111222
Q ss_pred Eec----cCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 374 LQR----GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 374 l~r----G~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
..- ...+.....|||+|+++.|.++..+....||.++
T Consensus 110 ~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 110 IKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp EECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred eccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 211 1223347899999999888888888877888775
No 273
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=86.09 E-value=33 Score=35.25 Aligned_cols=95 Identities=9% Similarity=0.050 Sum_probs=53.2
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~-dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
+.|.++|+........+......-..|+++|.+.+|.-++. ....|..+++.-. ....+ +..+.
T Consensus 101 ~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~------------~~~~~--~~~~l- 165 (318)
T 3sov_A 101 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS------------SRFII--INSEI- 165 (318)
T ss_dssp TEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC------------SCEEE--ECSSC-
T ss_pred CEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC------------CeEEE--EECCC-
Confidence 56777777654332233333445688999996554444442 2233566654321 01111 11121
Q ss_pred cccEEEEEEcCCCCEEEEEe-CCCcEEEEecCC
Q 005349 380 NAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 411 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~ 411 (701)
..-..|+|+++++.|..+. ..++|..+++..
T Consensus 166 -~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 166 -YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp -SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -CCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 2357999999777666554 467888888863
No 274
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=85.47 E-value=6 Score=42.11 Aligned_cols=97 Identities=11% Similarity=0.115 Sum_probs=60.1
Q ss_pred CCeEEEEECCCC----cEEEEeecCC-CCeEEEEEcCCCCEEEEEeC---C------------CcEEEEEEcCCCCCCCC
Q 005349 300 VGMVIVRDIVSK----NVIAQFRAHK-SPISALCFDPSGILLVTASV---Q------------GHNINIFKIIPGILGTS 359 (701)
Q Consensus 300 dG~V~IwDl~s~----~~i~~~~~H~-~~Is~laFSPdG~lLaTaS~---d------------Gt~I~Iwdl~~~~~~~~ 359 (701)
...|.||++... ..+.++.+.. ...+.++++++|.+.+|.+. | .. =+||.+.++
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~-g~vyr~d~~----- 211 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW-SFVTYYSPN----- 211 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCC-EEEEEECTT-----
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCc-cEEEEEECC-----
Confidence 457788776543 2334444332 46899999999999998652 1 11 245554432
Q ss_pred CccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCCC
Q 005349 360 SACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISS-SRGTSHLFAINPLGG 414 (701)
Q Consensus 360 s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~~g~ 414 (701)
..+. +..+.. .-+.|+||||+++|..+. ..++|+.|++...+.
T Consensus 212 -------~~~~---~~~~l~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~ 255 (355)
T 3sre_A 212 -------DVRV---VAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANWT 255 (355)
T ss_dssp -------CCEE---EEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred -------eEEE---eecCCc--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc
Confidence 1111 112222 257899999998877654 578999999986443
No 275
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=85.44 E-value=7 Score=39.72 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=51.2
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
..|.|..+|..+++....... ......|+|+|||++|..+......|.+|++..... ........+
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~---------~~~~~~~~~---- 228 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK---------GTAEVLVKI---- 228 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT---------TCEEEEEEC----
T ss_pred CCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC---------CccceEEeC----
Confidence 457888999877754322221 123356999999996665654434488998864210 011121121
Q ss_pred CcccEEEEEEcCCCCEEEEEeC
Q 005349 379 TNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
.. ...|++.+||++.++...
T Consensus 229 -~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 229 -PN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp -SS-EEEEEECTTSCEEEEEEE
T ss_pred -CC-CCCeEECCCCCEEEEecC
Confidence 12 577999999987666544
No 276
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=85.36 E-value=1.6 Score=51.09 Aligned_cols=75 Identities=9% Similarity=0.031 Sum_probs=48.3
Q ss_pred cCCC-CeEEEEEc-CCCCEEEEEeCC-C---cEEEEEEcCCC-CCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCC
Q 005349 319 AHKS-PISALCFD-PSGILLVTASVQ-G---HNINIFKIIPG-ILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 391 (701)
Q Consensus 319 ~H~~-~Is~laFS-PdG~lLaTaS~d-G---t~I~Iwdl~~~-~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpD 391 (701)
+|.- .+...+|| |||++||-+... | ..|+++|+.++ ..-. .. +.. ...+++||||
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~----------~~---~~~-----~~~~~~WspD 231 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA----------DK---VSG-----TNGEIVWGPD 231 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC----------CC---EEE-----ECSCCEECSS
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC----------cc---ccC-----ceeeEEEecC
Confidence 3443 68889999 999998865442 3 24899998764 2000 11 111 1246889999
Q ss_pred CCEEEEEeCCC-----cEEEEecCC
Q 005349 392 SNWIMISSSRG-----TSHLFAINP 411 (701)
Q Consensus 392 g~~lAsgS~dg-----TI~Iwdl~~ 411 (701)
|+.|+..+.|. .|.++++..
T Consensus 232 g~~l~y~~~d~~~~~~~v~~~~lgt 256 (751)
T 2xe4_A 232 HTSLFYVTKDETLRENKVWRHVMGK 256 (751)
T ss_dssp TTEEEEEEECTTCCEEEEEEEETTS
T ss_pred CCEEEEEEECCCCCCCEEEEEECCC
Confidence 99999887653 466666654
No 277
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=84.19 E-value=46 Score=35.28 Aligned_cols=102 Identities=6% Similarity=-0.096 Sum_probs=56.1
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcc
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 381 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a 381 (701)
.|...++........+...-..-..|+|+|++..|.-++.....|..+|+... ..+.+... .+. ..
T Consensus 226 ~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~------------~~~~~~~~-~~~-l~ 291 (400)
T 3p5b_L 226 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------------NRKTILED-EKR-LA 291 (400)
T ss_dssp CEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------CCEEEEEC-SST-TS
T ss_pred EEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC------------ccEEEEeC-CCC-CC
Confidence 45555554433222223333456889999988888888877666888887532 11222221 111 11
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 382 VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 382 ~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
.-..|++. .+..+.+-...++|..++..+......+
T Consensus 292 ~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 292 HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp SEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred CCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 24567773 3345555566778888875554433333
No 278
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=83.81 E-value=69 Score=36.95 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=58.6
Q ss_pred CCCeEEEEECCCCcEEEEeec--------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeE
Q 005349 299 NVGMVIVRDIVSKNVIAQFRA--------HKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVH 370 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~--------H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~ 370 (701)
.+|-|..||..+++....... ....|.+++.+++|++|-.|..++. +.+||..++ .
T Consensus 375 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~G-l~~~d~~~~--------------~- 438 (795)
T 4a2l_A 375 NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGG-LSILHRNSG--------------Q- 438 (795)
T ss_dssp SSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTE-EEEEETTTC--------------C-
T ss_pred CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCc-eeEEeCCCC--------------c-
Confidence 345678888877654332211 1357999999999994444555444 789998765 1
Q ss_pred EEEEec---cCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 371 LYRLQR---GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 371 l~~l~r---G~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
...+.. +.....|.+++..++|+..+.+. +-+.+|+..+
T Consensus 439 ~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~ 480 (795)
T 4a2l_A 439 VENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQ 480 (795)
T ss_dssp EEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTT
T ss_pred EEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCC
Confidence 112211 11223599999999988555443 4577888654
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=82.87 E-value=56 Score=35.18 Aligned_cols=103 Identities=11% Similarity=0.043 Sum_probs=57.9
Q ss_pred CCCeEEEEECCCCcEEEEe-ecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE--
Q 005349 299 NVGMVIVRDIVSKNVIAQF-RAHK-SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL-- 374 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~-~~H~-~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l-- 374 (701)
..+.|+.+|..++.....+ .... ..-..|+|+|+|..|..++...+.|+.++.... .+... ....+.-.
T Consensus 248 ~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~-~~~~~------~~~~~ag~~g 320 (433)
T 4hw6_A 248 HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRE-TGKLA------VPYIVCGQHS 320 (433)
T ss_dssp TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTT-TCCBC------CCEEEEECTT
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCC-CcccC------cEEEEEecCC
Confidence 3467888888766653332 2111 223469999999977667766666888776531 00000 00000000
Q ss_pred eccC--------CcccEEEEEE---------cCCCCEEEEEeCCCcEEEEe
Q 005349 375 QRGL--------TNAVIQDISF---------SDDSNWIMISSSRGTSHLFA 408 (701)
Q Consensus 375 ~rG~--------~~a~I~~iaF---------SpDg~~lAsgS~dgTI~Iwd 408 (701)
..|. .-..-..|+| .++|++.++=+..+.|++++
T Consensus 321 ~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 321 SPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp CCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 0000 0012568999 77887777777777888876
No 280
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=82.38 E-value=5.2 Score=42.27 Aligned_cols=99 Identities=12% Similarity=0.124 Sum_probs=66.1
Q ss_pred CCCeEEEEECC---CCcEEEEee--cCC-----------CCeEEEEEcCCCCEEEEEeCC-CcEEEEEEcCCCCCCCCCc
Q 005349 299 NVGMVIVRDIV---SKNVIAQFR--AHK-----------SPISALCFDPSGILLVTASVQ-GHNINIFKIIPGILGTSSA 361 (701)
Q Consensus 299 ~dG~V~IwDl~---s~~~i~~~~--~H~-----------~~Is~laFSPdG~lLaTaS~d-Gt~I~Iwdl~~~~~~~~s~ 361 (701)
.+..|..||+. +++.+..+. +.. .....|+.+++|+..+|.+.. +. ||.+.+. |
T Consensus 98 g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~---I~rV~pd--G---- 168 (334)
T 2p9w_A 98 GASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA---IARVSAD--G---- 168 (334)
T ss_dssp SCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE---EEEECTT--S----
T ss_pred CCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe---EEEEeCC--C----
Confidence 35679999999 776554433 211 248899999999999999887 64 5555543 1
Q ss_pred cCCCCceeEEEEEec--cCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 362 CDAGTSYVHLYRLQR--GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 362 ~~~~~~~~~l~~l~r--G~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
.....+-+.. .....-...|++.|||+.|++....|.+..||+..
T Consensus 169 -----~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 169 -----KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp -----CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred -----CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 0011122221 11111266899999999999887799999999873
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=82.13 E-value=47 Score=33.78 Aligned_cols=102 Identities=6% Similarity=-0.092 Sum_probs=56.6
Q ss_pred CeEEEEECCCCcEEEEe-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 301 GMVIVRDIVSKNVIAQF-RAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~-~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
+.|...++..... ..+ ...-..-..|+|+|++..|..++.....|..+|+... ..+.+... +..
T Consensus 143 ~~I~~~~~dG~~~-~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~------------~~~~~~~~--~~~ 207 (316)
T 1ijq_A 143 AKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------------NRKTILED--EKR 207 (316)
T ss_dssp CEEEEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEEEC--TTT
T ss_pred CeEEEEcCCCCCe-EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC------------ceEEEeec--CCc
Confidence 4555555543222 222 2223456789999988777777766666888887532 11222221 111
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 380 NAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
...-..|++. +++.+.+-...++|..++..+......+
T Consensus 208 ~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 208 LAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred cCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 1225678885 3555556666778888876554433333
No 282
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=81.37 E-value=71 Score=35.40 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcC
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKII 352 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~ 352 (701)
..-..|+|+|+|.+|..++...+.|+.++..
T Consensus 310 ~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 310 SWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 3457899999999777777777778886653
No 283
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=81.16 E-value=6 Score=42.15 Aligned_cols=100 Identities=11% Similarity=0.225 Sum_probs=63.7
Q ss_pred ccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCC----CCE--EEEEeC-C--CcEEEEEEcCCCCCCCCCccCCCC
Q 005349 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS----GIL--LVTASV-Q--GHNINIFKIIPGILGTSSACDAGT 366 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd----G~l--LaTaS~-d--Gt~I~Iwdl~~~~~~~~s~~~~~~ 366 (701)
.....+-+.|||+ .++.++.+.. +.++.|..-|+ |+. ||.++. + ...|.+|++.+..
T Consensus 45 ~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~----------- 110 (355)
T 3amr_A 45 TTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN----------- 110 (355)
T ss_dssp EEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-----------
T ss_pred EEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-----------
Confidence 3445678999999 7888888864 56777777663 332 334443 3 3569999885430
Q ss_pred ceeEEEEEec-----cCCcccEEEEEE--cCC-CC-EEEEEeCCCcEEEEecCC
Q 005349 367 SYVHLYRLQR-----GLTNAVIQDISF--SDD-SN-WIMISSSRGTSHLFAINP 411 (701)
Q Consensus 367 ~~~~l~~l~r-----G~~~a~I~~iaF--SpD-g~-~lAsgS~dgTI~Iwdl~~ 411 (701)
..+..+-+ +.....++.+|+ +|+ ++ ++.+...+|.+..|++..
T Consensus 111 --~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~ 162 (355)
T 3amr_A 111 --GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA 162 (355)
T ss_dssp --CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred --CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence 12333311 011134778898 774 54 677888899999999964
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=81.12 E-value=92 Score=36.54 Aligned_cols=96 Identities=17% Similarity=0.062 Sum_probs=56.6
Q ss_pred CCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~-dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
.+.|.+.|+........+.........|+++|.+.+|.-++. ....|.+.++.-. .. ..+-..
T Consensus 492 ~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~--------------~~-~~lv~~- 555 (791)
T 3m0c_C 492 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--------------DI-YSLVTE- 555 (791)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--------------CE-EEEECS-
T ss_pred CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC--------------ce-EEEEeC-
Confidence 457888888765544444444456789999997544444443 2133666666422 11 222111
Q ss_pred CcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCC
Q 005349 379 TNAVIQDISFSDDSNWIMISS-SRGTSHLFAINP 411 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~ 411 (701)
.-.....|++++++.+|..+. ..++|..+++.-
T Consensus 556 ~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 556 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 112478999998777766654 355788888754
No 285
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=80.39 E-value=22 Score=35.81 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=55.2
Q ss_pred CCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASV-QGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~-dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
..+.|..||...+ ....+.. ......|+|+++|+++++... ++..|..+|..++ ....+..+. +
T Consensus 51 ~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g------------~~~~~~~~~-~ 115 (306)
T 2p4o_A 51 EVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG------------TVETLLTLP-D 115 (306)
T ss_dssp TTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS------------CEEEEEECT-T
T ss_pred CCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC------------eEEEEEeCC-C
Confidence 4578888887754 3333332 246788999999997776543 2322445565554 122233321 1
Q ss_pred CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 005349 378 LTNAVIQDISFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 378 ~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
......+++.+++..+++-+.++.|.++|..
T Consensus 116 --~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~ 146 (306)
T 2p4o_A 116 --AIFLNGITPLSDTQYLTADSYRGAIWLIDVV 146 (306)
T ss_dssp --CSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred --ccccCcccccCCCcEEEEECCCCeEEEEeCC
Confidence 1124566667777666665568877777764
No 286
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=80.25 E-value=6.2 Score=44.99 Aligned_cols=95 Identities=12% Similarity=0.099 Sum_probs=62.5
Q ss_pred eEEEEECCCCc--EEEEee-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 302 MVIVRDIVSKN--VIAQFR-AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 302 ~V~IwDl~s~~--~i~~~~-~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
.+.+||..+++ .+..+. .+..-..++++.++|++++.|+.++..+.+||..+. .-..+-.+
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~------------~W~~~~~~---- 283 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD------------SWIPGPDM---- 283 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT------------EEEECCCC----
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC------------ceeECCCC----
Confidence 58899998875 333443 344445568899999999999966656999998764 00111111
Q ss_pred Cccc-EEEEEEcCCCCEEEEEe-CC-----CcEEEEecCCC
Q 005349 379 TNAV-IQDISFSDDSNWIMISS-SR-----GTSHLFAINPL 412 (701)
Q Consensus 379 ~~a~-I~~iaFSpDg~~lAsgS-~d-----gTI~Iwdl~~~ 412 (701)
...+ -.++++-+||+.++.|+ .+ .++.+||..+.
T Consensus 284 ~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 284 QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 1111 12456668999999998 34 57899998653
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=77.94 E-value=1.1e+02 Score=35.75 Aligned_cols=103 Identities=7% Similarity=-0.075 Sum_probs=55.1
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCc
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~ 380 (701)
+.|.+.++........+...-.....|++++.+..|.-++.....|..+++.-. ..+.+..- .+..
T Consensus 537 ~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~------------~~~~v~~~-~~~l- 602 (791)
T 3m0c_C 537 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------------NRKTILED-EKRL- 602 (791)
T ss_dssp CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEEEC-TTTT-
T ss_pred CeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC------------ceEEEecC-CCcc-
Confidence 356666665443333333333567889999887777777776666888887432 11222111 1111
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 381 a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
..-..|++..+ +.+.+-...++|...+.........+
T Consensus 603 ~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 603 AHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp SSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEe
Confidence 12456766433 34444445567776665554444344
No 288
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=77.43 E-value=6.2 Score=44.98 Aligned_cols=61 Identities=23% Similarity=0.341 Sum_probs=41.5
Q ss_pred eEEEEEcCCCCEEEEEeCC----------CcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCC
Q 005349 324 ISALCFDPSGILLVTASVQ----------GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSN 393 (701)
Q Consensus 324 Is~laFSPdG~lLaTaS~d----------Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~ 393 (701)
.-.|+|+|+|.|++.-+.+ |. -.+|-..+. ...+++|-++...++++.++|+||++
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gn-n~~~~~~~~-------------~g~~~rf~~~P~gaE~TG~~fspDg~ 543 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGN-NQMLCADPA-------------TGEIRRFMVGPIGCEVTGISFSPDQK 543 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCS-CEEEEECTT-------------TCCEEEEEECCTTCEEEEEEECTTSS
T ss_pred CcceEECCCCCEEEEecCCCccccccccccc-ceEEEEeCC-------------CCeEEEEEeCCCCccCcCeeECCCCC
Confidence 4669999999988775543 12 133433221 12456777777778899999999998
Q ss_pred EEEEE
Q 005349 394 WIMIS 398 (701)
Q Consensus 394 ~lAsg 398 (701)
.|.+.
T Consensus 544 tlfvn 548 (592)
T 3zwu_A 544 TLFVG 548 (592)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87664
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=77.31 E-value=3.5 Score=47.89 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=50.9
Q ss_pred CCeEEEEECCCCcEEEEeecCCCCeEEEEEcCC-CCEEEEEeCC-CcEEEEEEcCCCCCCCCCccCCCCceeEEEEEecc
Q 005349 300 VGMVIVRDIVSKNVIAQFRAHKSPISALCFDPS-GILLVTASVQ-GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRG 377 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPd-G~lLaTaS~d-Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG 377 (701)
.+.|.++|+........+.........|+++|+ |.+++|-... ++ |.++++... ....+ +..+
T Consensus 474 ~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~-I~~~~~dG~------------~~~~l--~~~~ 538 (699)
T 1n7d_A 474 LGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGV------------DIYSL--VTEN 538 (699)
T ss_dssp TSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCC-EEBCCSSSC------------CCCEE--SCSS
T ss_pred CCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCe-EEEEeCCCC------------CeeEE--EeCC
Confidence 356777777655443333332234567899996 4444443222 34 555554321 00111 1111
Q ss_pred CCcccEEEEEEcCCCCEEE-EEeCCCcEEEEecCC
Q 005349 378 LTNAVIQDISFSDDSNWIM-ISSSRGTSHLFAINP 411 (701)
Q Consensus 378 ~~~a~I~~iaFSpDg~~lA-sgS~dgTI~Iwdl~~ 411 (701)
. ..-..|+|+|++++|. +-+..++|.++++..
T Consensus 539 l--~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 539 I--QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp C--SSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred C--CCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 1 1246799999765554 445567888888863
No 290
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=77.17 E-value=63 Score=32.40 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=47.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCc-----ccEEEEEEcCCCCEEE
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN-----AVIQDISFSDDSNWIM 396 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~-----a~I~~iaFSpDg~~lA 396 (701)
..+++|+|+|.-..|..-|...+.+-++|..- .....+.|.+|... ..-..|+|.++|+..
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-------------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly- 238 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-------------EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY- 238 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTC-------------CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE-
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-------------CEEEEEEcCCccCCcccccCCCCeeEECCCCCEE-
Confidence 45789999996444444455556688888653 23556677666422 236799999999844
Q ss_pred EEeCCCcEEEEe
Q 005349 397 ISSSRGTSHLFA 408 (701)
Q Consensus 397 sgS~dgTI~Iwd 408 (701)
++|..+-+.+|.
T Consensus 239 IvsE~n~~y~f~ 250 (255)
T 3qqz_A 239 IVSEPNRFYRFT 250 (255)
T ss_dssp EEETTTEEEEEE
T ss_pred EEcCCceEEEEE
Confidence 557777555554
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=76.36 E-value=18 Score=38.99 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=56.7
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEEEcCCCCCCCCCccCCCCceeEEEEEec
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQG----HNINIFKIIPGILGTSSACDAGTSYVHLYRLQR 376 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dG----t~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r 376 (701)
+.|+.+|+.++.... +-........|+|+++|++|..++..+ ..+.+++.... ......+..
T Consensus 159 ~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~-------------~~~~~~l~~ 224 (430)
T 3tc9_A 159 HPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG-------------FKVITELTK 224 (430)
T ss_dssp EEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT-------------SCSEEEEEE
T ss_pred CcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc-------------eeeeeeecc
Confidence 788899998775443 333445678999999999655555421 12333332211 010012222
Q ss_pred cCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCC
Q 005349 377 GLTNAVIQDISFSD-DSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 377 G~~~a~I~~iaFSp-Dg~~lAsgS~dgTI~Iwdl~~ 411 (701)
.. ...+++++| +|..+++-..++.|..|+...
T Consensus 225 ~~---~p~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 225 GQ---NCNGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp CS---SCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred CC---CceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 11 246789999 777777766778888888763
No 292
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=75.39 E-value=79 Score=32.64 Aligned_cols=95 Identities=8% Similarity=-0.077 Sum_probs=51.7
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCc
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~ 380 (701)
+.|...|+........+...-..-+.|+|+|++..|.-++.....|..+|+... ..+.+ +..+ .
T Consensus 182 ~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~------------~~~~~--~~~~--~ 245 (349)
T 3v64_C 182 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS------------HRKAV--ISQG--L 245 (349)
T ss_dssp CEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEE--ECSS--C
T ss_pred CEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC------------ceEEE--EeCC--C
Confidence 445555554332221122223346789999987777777766666888886532 11111 1111 1
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 005349 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINPL 412 (701)
Q Consensus 381 a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~ 412 (701)
..-..|++ .++..+.+-...+.|..++....
T Consensus 246 ~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 246 PHPFAITV-FEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp SSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence 23567888 34455555556677777764343
No 293
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=74.67 E-value=10 Score=40.91 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=46.1
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEE-EEeCC
Q 005349 324 ISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIM-ISSSR 401 (701)
Q Consensus 324 Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lA-sgS~d 401 (701)
...++++| +|.++++-...++ |..|+...+ ....+..+ +. ...-..|+|+|||++|. +-...
T Consensus 228 p~giavdp~~g~lyv~d~~~~~-V~~~~~~~~------------~~~~~~~~--~~-~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 228 CNGAETHPINGELYFNSWNAGQ-VFRYDFTTQ------------ETTPLFTI--QD-SGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp CCCEEECTTTCCEEEEETTTTE-EEEEETTTT------------EEEEEEEC--SS-SSCCEEEEECTTSSEEEEEETTT
T ss_pred ceEEEEeCCCCEEEEEECCCCE-EEEEECCCC------------cEEEEEEc--CC-CCcceeEEEcCCCCEEEEEECCC
Confidence 35688999 7887776555554 888887654 11122222 11 12357899999999554 44567
Q ss_pred CcEEEEecCC
Q 005349 402 GTSHLFAINP 411 (701)
Q Consensus 402 gTI~Iwdl~~ 411 (701)
++|.+|+.+.
T Consensus 292 ~~I~~~~~d~ 301 (430)
T 3tc9_A 292 HYILRSDYDW 301 (430)
T ss_dssp TEEEEEEEET
T ss_pred CEEEEEeCCc
Confidence 8899988764
No 294
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=74.07 E-value=1.3e+02 Score=34.55 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=60.2
Q ss_pred CCeEEEEECCCCcEEEEee-----cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE
Q 005349 300 VGMVIVRDIVSKNVIAQFR-----AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 300 dG~V~IwDl~s~~~i~~~~-----~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l 374 (701)
++-|.++|..+++.. .+. .+...|.++..+++|++.+... +| +.+||..++ ....+
T Consensus 426 ~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G--l~~~~~~~~---------------~~~~~ 486 (795)
T 4a2l_A 426 AGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA--LVRFNPEQR---------------SFTTI 486 (795)
T ss_dssp TTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEES-SC--EEEEETTTT---------------EEEEC
T ss_pred cCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc--eeEEeCCCC---------------eEEEc
Confidence 456888998877643 333 2345799999999999877655 55 788987664 11122
Q ss_pred ec-----cCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 375 QR-----GLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 375 ~r-----G~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
.. +.....|.++...++|+..+.+. +-+.+|+...
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~ 526 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEG 526 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEET
T ss_pred cccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCC
Confidence 11 12224599999999998665544 4577888754
No 295
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=73.63 E-value=22 Score=37.51 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=64.1
Q ss_pred CCCeEEEEECCCCcEEEEeecC-----CC--CeEEEEE---cCCCCEEEEEeC-------------CCcEEEEEEcC---
Q 005349 299 NVGMVIVRDIVSKNVIAQFRAH-----KS--PISALCF---DPSGILLVTASV-------------QGHNINIFKII--- 352 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~i~~~~~H-----~~--~Is~laF---SPdG~lLaTaS~-------------dGt~I~Iwdl~--- 352 (701)
..|.|..||...+.....+-.+ .. .++.|.| +|+|++|+.+.. + ..+..||+.
T Consensus 33 ~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~-~~v~~~Dl~~~~ 111 (334)
T 2p9w_A 33 YKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGA-SSFHSFNLPLSE 111 (334)
T ss_dssp TTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSC-CEEEEEESSCCT
T ss_pred cCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCC-CEEEEEcCCcCC
Confidence 5688999998766443332222 11 3578999 799999986542 3 347889987
Q ss_pred CCCCCCCCccCCCCceeEEEEEec---------cCCcccEEEEEEcCCCCEEEEEeCC-CcEEEEecCCCCC
Q 005349 353 PGILGTSSACDAGTSYVHLYRLQR---------GLTNAVIQDISFSDDSNWIMISSSR-GTSHLFAINPLGG 414 (701)
Q Consensus 353 ~~~~~~~s~~~~~~~~~~l~~l~r---------G~~~a~I~~iaFSpDg~~lAsgS~d-gTI~Iwdl~~~g~ 414 (701)
++ .......|.. |......++++..++|+..++++.- +. ||.+++.|.
T Consensus 112 tg------------~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~pdG~ 169 (334)
T 2p9w_A 112 NS------------KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSADGK 169 (334)
T ss_dssp TC------------CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECTTSC
T ss_pred CC------------CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeCCCC
Confidence 54 1122223310 1011238899999999999998876 65 667766654
No 296
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=70.79 E-value=21 Score=37.30 Aligned_cols=92 Identities=11% Similarity=0.116 Sum_probs=48.2
Q ss_pred CCCCeEEEEECCCCc--EEEEee---cCCCCeEEEEEcCC----CCEEEEEeCCC----cEEEEEEcCCCCCCCCCccCC
Q 005349 298 DNVGMVIVRDIVSKN--VIAQFR---AHKSPISALCFDPS----GILLVTASVQG----HNINIFKIIPGILGTSSACDA 364 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~--~i~~~~---~H~~~Is~laFSPd----G~lLaTaS~dG----t~I~Iwdl~~~~~~~~s~~~~ 364 (701)
+..|.|++++ .++ .+..+. .-......|+|+|| |.+.++-+..+ +.|..|+.... .
T Consensus 48 e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~---~------ 116 (352)
T 2ism_A 48 ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGE---R------ 116 (352)
T ss_dssp ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSS---C------
T ss_pred eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCC---C------
Confidence 3458899988 333 233332 12346789999998 55555544321 33666666432 0
Q ss_pred CCceeEEEE-Eec-cCCcccEEEEEEcCCCCEEEEEeC
Q 005349 365 GTSYVHLYR-LQR-GLTNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 365 ~~~~~~l~~-l~r-G~~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
....+.+.+ +.. ....+....|+|.|||.+.++.++
T Consensus 117 ~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~ 154 (352)
T 2ism_A 117 GVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGE 154 (352)
T ss_dssp EEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCC
T ss_pred cCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECC
Confidence 001122222 321 111122468999999976666443
No 297
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=70.18 E-value=26 Score=36.70 Aligned_cols=94 Identities=14% Similarity=0.137 Sum_probs=49.3
Q ss_pred CCCCeEEEEECCCCc-EEEEee---cCCCCeEEEEEcCC----CCEEEEEeC---CC---cEEEEEEcCCCCCCCCCccC
Q 005349 298 DNVGMVIVRDIVSKN-VIAQFR---AHKSPISALCFDPS----GILLVTASV---QG---HNINIFKIIPGILGTSSACD 363 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~-~i~~~~---~H~~~Is~laFSPd----G~lLaTaS~---dG---t~I~Iwdl~~~~~~~~s~~~ 363 (701)
+..|.|+++|. .++ .+..+. ........|+|+|+ |.+.++-+. ++ +.|..|+.... ...
T Consensus 46 e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~-~~~----- 118 (354)
T 3a9g_A 46 ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGS-TFK----- 118 (354)
T ss_dssp ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSS-SCC-----
T ss_pred eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCC-CcC-----
Confidence 34588988873 443 333332 12346789999997 666666543 21 23555665432 000
Q ss_pred CCCceeEEEE-EeccCCcccEEEEEEcCCCCEEEEEeC
Q 005349 364 AGTSYVHLYR-LQRGLTNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 364 ~~~~~~~l~~-l~rG~~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
....+.+.+ +..+ ..+.-..|+|.|||++.++.++
T Consensus 119 -~~~~~~l~~~~~~~-~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 119 -LKEVKTLIDGIPGA-YIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp -EEEEEEEEEEEECC-SSCCCCCEEECTTSCEEEECCC
T ss_pred -cCccEEEEEcCCCC-CCcCCceEEECCCCcEEEEECC
Confidence 001122222 3221 1122467999999987776543
No 298
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=70.13 E-value=12 Score=40.62 Aligned_cols=73 Identities=12% Similarity=0.136 Sum_probs=45.2
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCce-eEEEEEeccCCcccEEEEEEcCCCCEEEE-EeC
Q 005349 324 ISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSY-VHLYRLQRGLTNAVIQDISFSDDSNWIMI-SSS 400 (701)
Q Consensus 324 Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~-~~l~~l~rG~~~a~I~~iaFSpDg~~lAs-gS~ 400 (701)
...++++| +|.++++-..++. |+.+|..++ .. ..+.. -+.. ..-..|+|+|||++|.. -+.
T Consensus 230 P~giavd~~~G~lyv~d~~~~~-V~~~d~~~g------------~~~~~~~~--~~~~-~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAM-ISSYDPATG------------TLTEEEVM--MDTK-GSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSE-EEEECTTTC------------CEEEEEEE--CSCC-SSCEEEEECTTSSEEEEEETT
T ss_pred CCEEEEeCCCCeEEEEECCCCE-EEEEECCCC------------eEEEEEec--cCCC-CCcccEEEeCCCCEEEEEeCC
Confidence 35589999 7887766555554 778877654 11 12221 1221 12347999999995554 445
Q ss_pred CCcEEEEecCCC
Q 005349 401 RGTSHLFAINPL 412 (701)
Q Consensus 401 dgTI~Iwdl~~~ 412 (701)
.+.|+.++++..
T Consensus 294 ~~~I~~~~~d~~ 305 (433)
T 4hw6_A 294 KHCIYRVDYNRE 305 (433)
T ss_dssp TTEEEEEEBCTT
T ss_pred CCEEEEEeCCCC
Confidence 678999887643
No 299
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=68.30 E-value=28 Score=38.00 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=36.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC----CcccEEEEEEcCC---CCEE
Q 005349 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL----TNAVIQDISFSDD---SNWI 395 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~----~~a~I~~iaFSpD---g~~l 395 (701)
.-..|+|.|||++|++-...|+ |++++...+ ....+..+.... ...-..+|+|+|| +.+|
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~-I~~~~~~~g------------~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~l 94 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGK-ILRVNPESG------------SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI 94 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCE-EEEECTTTC------------CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred CceEEEEcCCCcEEEEEcCCCE-EEEEECCCC------------cEeEEecCCccccccCCCCceeEEEECCCcCcCCEE
Confidence 4468999999998887543334 666654333 112233332211 0123779999996 5555
Q ss_pred EEEe
Q 005349 396 MISS 399 (701)
Q Consensus 396 AsgS 399 (701)
..+.
T Consensus 95 Yv~~ 98 (454)
T 1cru_A 95 YISG 98 (454)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5444
No 300
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=67.42 E-value=36 Score=41.92 Aligned_cols=91 Identities=11% Similarity=0.109 Sum_probs=58.9
Q ss_pred eEEEEECCCCcEEEEeecC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCc
Q 005349 302 MVIVRDIVSKNVIAQFRAH-KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H-~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~ 380 (701)
.|++.+...++.+...+.. ...|.+.+.+. .+++.++ .+. +.+|++..+ ....+.+. .-.
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~-l~~fel~~~------------~L~~~~~~---~l~ 553 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRA-LYYLQIHPQ------------ELRQISHT---EME 553 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTE-EEEEEEETT------------EEEEEEEE---ECS
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCE-EEEEEeeCC------------ceeeeccc---CCC
Confidence 4566666655566666643 34677777654 4666665 444 778888654 11222121 123
Q ss_pred ccEEEEEEcCC------CCEEEEEeC-CCcEEEEecCC
Q 005349 381 AVIQDISFSDD------SNWIMISSS-RGTSHLFAINP 411 (701)
Q Consensus 381 a~I~~iaFSpD------g~~lAsgS~-dgTI~Iwdl~~ 411 (701)
..|.|+++.|. ++++|.|.. |++++|+++..
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 46999999863 479999996 99999999974
No 301
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=65.17 E-value=35 Score=35.50 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=42.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe---ccCCcccEEEEEEcCC---CCEEE
Q 005349 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---RGLTNAVIQDISFSDD---SNWIM 396 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~---rG~~~a~I~~iaFSpD---g~~lA 396 (701)
.-..|+|+|||+++++ ..+|+ |++++ .+ ....+..+. .+ ......|+|+|| +.+|.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~-I~~i~--~g------------~~~~~~~~~v~~~g--~~~p~gia~~pdf~~~g~lY 93 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGR-IRLFR--EG------------RLSTYAELSVYHRG--ESGLLGLALHPRFPQEPYVY 93 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTE-EEEEE--TT------------EEEEEEECCCCCST--TCSEEEEEECTTTTTSCEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCe-EEEEE--CC------------CccEeecceEeecC--CCCceeEEECCCCCCCCEEE
Confidence 4468999999997776 45576 78877 33 112222221 11 123789999999 55555
Q ss_pred EEeC-C-----CcEEEEecC
Q 005349 397 ISSS-R-----GTSHLFAIN 410 (701)
Q Consensus 397 sgS~-d-----gTI~Iwdl~ 410 (701)
.+.. . +.|..|++.
T Consensus 94 v~~~~~~~~~~~~v~r~~~~ 113 (352)
T 2ism_A 94 AYRTVAEGGLRNQVVRLRHL 113 (352)
T ss_dssp EEEEECTTSSEEEEEEEEEC
T ss_pred EEEecCCCCCccEEEEEEeC
Confidence 4433 2 566667765
No 302
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=64.95 E-value=27 Score=38.21 Aligned_cols=80 Identities=25% Similarity=0.373 Sum_probs=51.3
Q ss_pred CCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEec-----cCC--cccEEEEEEc
Q 005349 320 HKSPISALCFDPS---GILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQR-----GLT--NAVIQDISFS 389 (701)
Q Consensus 320 H~~~Is~laFSPd---G~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~r-----G~~--~a~I~~iaFS 389 (701)
...+|..+-|+|- |..|++=-.|+. ||+||+...... .. .|.+ |.. -..|.++||+
T Consensus 123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~~------------P~-~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 123 PKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQEK------------PI-VLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTSC------------CE-EESCCCSEEESCSSCCCEEEEEEC
T ss_pred CCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCCC------------Cc-chhccccccCCCcccceEEEEEEc
Confidence 3578999999994 557888888887 999999863111 11 2211 111 1348999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCC
Q 005349 390 DDSNWIMISSSRGTSHLFAINPLG 413 (701)
Q Consensus 390 pDg~~lAsgS~dgTI~Iwdl~~~g 413 (701)
.++-.|-..+....=.||.+.|+-
T Consensus 189 ~~~lTLYvl~~t~~GDIYAlcP~L 212 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAFYPFL 212 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEESSCC
T ss_pred CCCcEEEEEecCCCCCEEEECCCC
Confidence 988766665532222566766653
No 303
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=63.31 E-value=25 Score=39.82 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=39.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCC----------CcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCC
Q 005349 322 SPISALCFDPSGILLVTASVQ----------GHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDD 391 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~d----------Gt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpD 391 (701)
..-..|+|+++|.+.+..+.. |. -.||.+.+. . ..+..+-.+...+.++.++||||
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gn-n~v~~~dp~----------t---Gel~~fl~~P~~aEpnGiafSPD 541 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGN-NQMLCADPA----------T---GEIRRFMVGPIGCEVTGISFSPD 541 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCS-CEEEEECTT----------T---CCEEEEEECCTTCEEEEEEECTT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCC-ceEEEEeCC----------C---CeEEEEEeCCCCccccCCEECCC
Confidence 355679999999988844321 11 145554432 0 12344444444467999999999
Q ss_pred CCEEEEE
Q 005349 392 SNWIMIS 398 (701)
Q Consensus 392 g~~lAsg 398 (701)
++.|.++
T Consensus 542 ~ktLfV~ 548 (592)
T 4a9v_A 542 QKTLFVG 548 (592)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9988775
No 304
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=62.20 E-value=58 Score=34.31 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=42.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe----ccCCcccEEEEEEcCC---CCE
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ----RGLTNAVIQDISFSDD---SNW 394 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~----rG~~~a~I~~iaFSpD---g~~ 394 (701)
..-..|+|.|||++|++--..|+ |++++...+ ....+..+. .|. .-..+|+|+|| +.+
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~-I~~v~~~~g------------~~~~v~~~~~v~~~g~--~GllGia~~Pdf~~~g~ 96 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEAT-ITRVDAKTG------------RKTELGEVPGVSPSGE--GGLLGIALSPDYASDHM 96 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCE-EEEECTTTC------------CEEEEEECTTCCCBTT--BSEEEEEECTTHHHHCE
T ss_pred CCceEEEEcCCCcEEEEEecCCE-EEEEECCCC------------cEeeecccCceeecCC--CCceeeEeccccccCCE
Confidence 45578999999999888655776 677764433 112222221 111 23789999996 444
Q ss_pred EEEE-e--CCCcEEEEecC
Q 005349 395 IMIS-S--SRGTSHLFAIN 410 (701)
Q Consensus 395 lAsg-S--~dgTI~Iwdl~ 410 (701)
|... + .++.|.-|.+.
T Consensus 97 lYv~yt~~~~~~v~R~~~~ 115 (347)
T 3das_A 97 VYAYFTSASDNRIVRMLYD 115 (347)
T ss_dssp EEEEEECSSSEEEEEEEBC
T ss_pred EEEEEecCCCCEEEEEEeC
Confidence 4432 2 33444444443
No 305
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=58.27 E-value=64 Score=35.06 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=49.1
Q ss_pred CeEEEEECCCCcE--EEEeec------CCCCeEEEEEcC----CCCEEEEEeC------C-----CcEEEEEEcCCCCCC
Q 005349 301 GMVIVRDIVSKNV--IAQFRA------HKSPISALCFDP----SGILLVTASV------Q-----GHNINIFKIIPGILG 357 (701)
Q Consensus 301 G~V~IwDl~s~~~--i~~~~~------H~~~Is~laFSP----dG~lLaTaS~------d-----Gt~I~Iwdl~~~~~~ 357 (701)
+.|++++..+++. +..+.. ....+..|+|+| +|.+.++-+. + .+.|.-|+.... .+
T Consensus 48 g~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~-~~ 126 (454)
T 1cru_A 48 GKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKS-TD 126 (454)
T ss_dssp CEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETT-TT
T ss_pred CEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCC-CC
Confidence 4688777654432 333331 245677999999 5666666543 1 122444444321 00
Q ss_pred CCCccCCCCceeEEEE-EeccCCcccEEEEEEcCCCCEEEEEeCC
Q 005349 358 TSSACDAGTSYVHLYR-LQRGLTNAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 358 ~~s~~~~~~~~~~l~~-l~rG~~~a~I~~iaFSpDg~~lAsgS~d 401 (701)
. ....+.+.+ +..+ ..+....|+|.|||++.++.++.
T Consensus 127 ~------~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 127 T------LEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp E------EEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEEECCT
T ss_pred C------cCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEEECCC
Confidence 0 011123332 3222 12347899999999987776543
No 306
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=57.59 E-value=49 Score=38.16 Aligned_cols=93 Identities=17% Similarity=0.250 Sum_probs=57.8
Q ss_pred CeEEEEECCCCcEEEEeecC-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEE-
Q 005349 301 GMVIVRDIVSKNVIAQFRAH-----KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRL- 374 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H-----~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l- 374 (701)
+-+.++|..+++........ ...|.+|..+++|++.+....+| +..||.... ....+
T Consensus 469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G--l~~~~~~~~---------------~~~~~~ 531 (781)
T 3v9f_A 469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG--VGIYTPDMQ---------------LVRKFN 531 (781)
T ss_dssp TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC--EEEECTTCC---------------EEEEEC
T ss_pred CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC--EEEEeCCCC---------------eEEEcc
Confidence 34667787766543322222 36799999999999887655455 567876553 12222
Q ss_pred -eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 375 -QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 375 -~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
..+.....|.+|...++|+..+++ .+|-+..||...
T Consensus 532 ~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~ 568 (781)
T 3v9f_A 532 QYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARN 568 (781)
T ss_dssp TTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTT
T ss_pred CCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCC
Confidence 223333459999999999865544 466546676543
No 307
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=56.75 E-value=36 Score=36.00 Aligned_cols=82 Identities=12% Similarity=0.173 Sum_probs=47.2
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCc
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~ 380 (701)
|.|.-+|-. ++ ..+...-.--+.|+|||||+.|..++.....|..|++... +. . .......+ .
T Consensus 203 g~vyr~d~~--~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~--g~------l-~~~~~~~~-----~ 265 (355)
T 3sre_A 203 SFVTYYSPN--DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN--WT------L-TPLRVLSF-----D 265 (355)
T ss_dssp EEEEEECTT--CC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT--SC------E-EEEEEEEC-----S
T ss_pred cEEEEEECC--eE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC--Cc------E-ecCEEEeC-----C
Confidence 556666653 22 2222222345789999999988888876667999998642 11 0 01111221 2
Q ss_pred ccEEEEEEcC-CCCEEEEEe
Q 005349 381 AVIQDISFSD-DSNWIMISS 399 (701)
Q Consensus 381 a~I~~iaFSp-Dg~~lAsgS 399 (701)
...-.+++.+ +|++.+++.
T Consensus 266 g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 266 TLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp SEEEEEEECTTTCCEEEEEE
T ss_pred CCCceEEEeCCCCcEEEEec
Confidence 2356788888 477665543
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=53.07 E-value=51 Score=34.37 Aligned_cols=72 Identities=14% Similarity=0.197 Sum_probs=42.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe---ccCCcccEEEEEEcCC---CCEE
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ---RGLTNAVIQDISFSDD---SNWI 395 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~---rG~~~a~I~~iaFSpD---g~~l 395 (701)
..-..|+|+|||+++++ ..+|+ |+++| ..+ . ..+..+. .+ .....+|+|+|| +.+|
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~-I~~~d-~~G------------~-~~~~~~~v~~~g--~~g~~gia~~pdf~~~g~l 90 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGR-LVLIS-PSG------------K-KLVASFDVANVG--EAGLLGLALHPEFPKKSWV 90 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTE-EEEEC-SSC------------E-EEEEECCCCCST--TCSEEEEEECTTTTTSCEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCE-EEEEe-CCC------------c-eEeeccceeecC--CCceeeEEeCCCCCcCCEE
Confidence 34578999999997776 45576 67776 233 1 1222221 11 123789999998 5555
Q ss_pred EEEeC----C----CcEEEEecCC
Q 005349 396 MISSS----R----GTSHLFAINP 411 (701)
Q Consensus 396 AsgS~----d----gTI~Iwdl~~ 411 (701)
..+.. + ..|..|++..
T Consensus 91 yv~~~~~~~~~~~~~~v~r~~~~~ 114 (354)
T 3a9g_A 91 YLYASYFAEGGHIRNRVIRGRLDG 114 (354)
T ss_dssp EEEEEEECGGGCEEEEEEEEEECS
T ss_pred EEEEeccCCCCCcceEEEEEEECC
Confidence 44433 2 4566666543
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=50.47 E-value=59 Score=33.80 Aligned_cols=44 Identities=7% Similarity=-0.022 Sum_probs=25.1
Q ss_pred CCCCeEEEEECCCCc--EEEEee----cCCCCeEEEEEcCC----CCEEEEEeC
Q 005349 298 DNVGMVIVRDIVSKN--VIAQFR----AHKSPISALCFDPS----GILLVTASV 341 (701)
Q Consensus 298 ~~dG~V~IwDl~s~~--~i~~~~----~H~~~Is~laFSPd----G~lLaTaS~ 341 (701)
+..|.|+++|..... .+..+. ........|+|+|| |.+.++-+.
T Consensus 36 e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~ 89 (353)
T 2g8s_A 36 LRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSE 89 (353)
T ss_dssp ETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred eCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeC
Confidence 345889888854221 111111 12346788999995 666666443
No 310
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=49.62 E-value=2.2e+02 Score=28.84 Aligned_cols=79 Identities=11% Similarity=-0.082 Sum_probs=47.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCC
Q 005349 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dg 402 (701)
.-+.|+|+|++..|.-++.....|..+|+... ..+.+. .+. ...-..|++..+ ..+.+-...+
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~------------~~~~~~---~~~-~~~P~glav~~~-~lywtd~~~~ 229 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT------------NRQAVV---KGS-LPHPFALTLFED-ILYWTDWSTH 229 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------SCEEEE---CSC-CSCEEEEEEETT-EEEEEETTTT
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCCCC------------ceEEEe---cCC-CCCceEEEEeCC-EEEEEecCCC
Confidence 45789999987777777776666888887532 112221 211 123567777543 4444555667
Q ss_pred cEEEEecCCCCCceee
Q 005349 403 TSHLFAINPLGGSVNF 418 (701)
Q Consensus 403 TI~Iwdl~~~g~~~~~ 418 (701)
.|..++..+......+
T Consensus 230 ~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 230 SILACNKYTGEGLREI 245 (318)
T ss_dssp EEEEEETTTCCSCEEE
T ss_pred eEEEEECCCCCceEEE
Confidence 7888887554443333
No 311
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=49.54 E-value=70 Score=35.44 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=41.2
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe-ccC-CcccEEEEEE-------cCCC
Q 005349 323 PISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ-RGL-TNAVIQDISF-------SDDS 392 (701)
Q Consensus 323 ~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~-rG~-~~a~I~~iaF-------SpDg 392 (701)
.-..|+|+| ++..|..+...++.|+++|+..+ .+..+- .+. .......|+| +++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---------------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G 204 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---------------MLSSPLNINTIPTNRIRSIAFNKKIEGYADEA 204 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---------------EEEEEECCTTSSCSBEEEEEECCCBTTTBCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---------------EEEEEEccCccccCCCcEEEEeecccccCCCC
Confidence 457799999 34444444444455888888765 333332 221 1123789999 9999
Q ss_pred CEEEEEeCCC
Q 005349 393 NWIMISSSRG 402 (701)
Q Consensus 393 ~~lAsgS~dg 402 (701)
++|.++...+
T Consensus 205 ~~lyvad~~~ 214 (496)
T 3kya_A 205 EYMIVAIDYD 214 (496)
T ss_dssp CEEEEEECCC
T ss_pred CEEEEEeCCC
Confidence 9777776654
No 312
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=48.83 E-value=1.9e+02 Score=30.85 Aligned_cols=54 Identities=7% Similarity=0.170 Sum_probs=39.2
Q ss_pred CeEEEEECCCC--cEEEEeec------CCCCeEEEEEc---CC----CCEEEEEeCCCcEEEEEEcCCC
Q 005349 301 GMVIVRDIVSK--NVIAQFRA------HKSPISALCFD---PS----GILLVTASVQGHNINIFKIIPG 354 (701)
Q Consensus 301 G~V~IwDl~s~--~~i~~~~~------H~~~Is~laFS---Pd----G~lLaTaS~dGt~I~Iwdl~~~ 354 (701)
-+|.+||+.+. ++++++.- ..+-+..|+++ |+ +.+.--++..+.-|.|+|+.++
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~ 191 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQ 191 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTT
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCC
Confidence 47999999999 98887762 13568999999 32 3454455544456899999886
No 313
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=44.42 E-value=12 Score=37.54 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=40.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCC
Q 005349 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dg 402 (701)
.+..|+|+|+|.+.|. .+|. ||...+....+ ..+-....++-+ .|-+. -..+.|.|+|.+.++ .||
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~---Ly~~~~~t~~~---~~W~~s~t~IG~--~Gw~~--F~a~~fD~~G~LYav--~dG 107 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDK---IYKGTPPTHDN---DNWMGRAKKIGN--GGWNQ--FQFLFFDPNGYLYAV--SKD 107 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTE---EEEESCCCSTT---CCHHHHCEEEEC--SCGGG--CSEEEECTTSCEEEE--ETT
T ss_pred cceeEEECCCccEEEE--eCCe---EEEECCCCCCc---ccccccccEecc--ccccc--ceEEEECCCCCEEEe--CCC
Confidence 5568999999998888 5564 56655431111 011011122111 01110 367999999999988 458
Q ss_pred cEEEEe
Q 005349 403 TSHLFA 408 (701)
Q Consensus 403 TI~Iwd 408 (701)
.|.-++
T Consensus 108 ~iyr~~ 113 (236)
T 1tl2_A 108 KLYKAS 113 (236)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 665443
No 314
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=41.92 E-value=2.9e+02 Score=27.86 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=45.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEE
Q 005349 319 AHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMIS 398 (701)
Q Consensus 319 ~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsg 398 (701)
.+...+..++|+|++++++.+. +|..++-+|-. + ..... +..+. ...+.+++++++++.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~g-G------------~tW~~--~~~~~-~~~~~~~~~~~~g~~~~~- 221 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPG-Q------------TAWEP--HNRTT-SRRLHNMGFTPDGRLWMI- 221 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEET-TSSEEEEECTT-C------------SSCEE--EECCS-SSCEEEEEECTTSCEEEE-
T ss_pred CCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCC-C------------CceeE--CCCCC-CCccceeEECCCCCEEEE-
Confidence 4556799999999999887764 56645544420 1 00111 12222 335889999999987654
Q ss_pred eCCCcEEEEe
Q 005349 399 SSRGTSHLFA 408 (701)
Q Consensus 399 S~dgTI~Iwd 408 (701)
+.+|.+.+.+
T Consensus 222 ~~~G~~~~s~ 231 (327)
T 2xbg_A 222 VNGGKIAFSD 231 (327)
T ss_dssp ETTTEEEEEE
T ss_pred eCCceEEEec
Confidence 4578776653
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.51 E-value=70 Score=38.38 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCC
Q 005349 323 PISALCFDPSGILLVTASVQGHNINIFKIIPG 354 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~ 354 (701)
.|.+++..++.++|.|-+.|++ +|||++.++
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~-LRiWsl~t~ 267 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTN 267 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCE-EEEEETTTT
T ss_pred eEEEEeecCCCcEEEEEECCCE-EEEEECCCC
Confidence 5778888899999999999976 999999887
No 316
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=40.06 E-value=1.9e+02 Score=30.24 Aligned_cols=97 Identities=8% Similarity=0.072 Sum_probs=50.4
Q ss_pred CCCeEEEEECCCCcE--EEEee----cCCCCeEEEEEcCC----CCEEEEEeC-CCcEEEEEEcCCCCCCCCCccCCCCc
Q 005349 299 NVGMVIVRDIVSKNV--IAQFR----AHKSPISALCFDPS----GILLVTASV-QGHNINIFKIIPGILGTSSACDAGTS 367 (701)
Q Consensus 299 ~dG~V~IwDl~s~~~--i~~~~----~H~~~Is~laFSPd----G~lLaTaS~-dGt~I~Iwdl~~~~~~~~s~~~~~~~ 367 (701)
..|.|++++...++. +..+. ........|+|+|| |.+.++-+. ..+.|.-|.+...... ......
T Consensus 51 ~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~----~~~~~~ 126 (347)
T 3das_A 51 DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPS----GEQLGA 126 (347)
T ss_dssp TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCT----TCCBCC
T ss_pred cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcc----cccCCC
Confidence 378999998765543 33232 23456889999995 776665332 2222333343321000 000111
Q ss_pred eeEEEE-EeccCCcccEEEEEEcCCCCEEEEEeC
Q 005349 368 YVHLYR-LQRGLTNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 368 ~~~l~~-l~rG~~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
.+.+++ +..+ ..+.-..|+|.|||++.++.++
T Consensus 127 ~~~i~~~~p~~-~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 127 PDTVFRGIPKG-VIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp CEEEEEEECCC-SSCCCCCEEECTTSCEEEECBC
T ss_pred cEEEEEcCCCC-CCccCccccCCCCCCEEEEECC
Confidence 233333 3322 1223567999999987777553
No 317
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=39.79 E-value=2.7e+02 Score=30.24 Aligned_cols=102 Identities=13% Similarity=0.167 Sum_probs=55.2
Q ss_pred cCCCCeEEEEECCCC---cEEEEee---c------CCCCeEEEEEcCC----CCEEEEEeCCC---------cEEEE--E
Q 005349 297 ADNVGMVIVRDIVSK---NVIAQFR---A------HKSPISALCFDPS----GILLVTASVQG---------HNINI--F 349 (701)
Q Consensus 297 ~~~dG~V~IwDl~s~---~~i~~~~---~------H~~~Is~laFSPd----G~lLaTaS~dG---------t~I~I--w 349 (701)
++..|.|++++.... ..+..+. + .......|+|+|+ +.+.++-+.+. ...+| |
T Consensus 32 ~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~ 111 (463)
T 2wg3_C 32 LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEY 111 (463)
T ss_dssp EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEE
T ss_pred EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEE
Confidence 455788999875432 2233332 1 1356889999996 77766654321 11244 5
Q ss_pred EcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCC
Q 005349 350 KIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRG 402 (701)
Q Consensus 350 dl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dg 402 (701)
.+..+. .... + ....+.+.++......+....|+|.|||++.++.++.+
T Consensus 112 ~~~~~~--~~~~-d-~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 112 TVSRKN--PHQV-D-LRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp EBCTTC--TTSB-C-GGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred EEcCCC--CCcc-C-CCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 544320 0000 0 01224455554222234478999999998877776654
No 318
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=39.45 E-value=4.6e+02 Score=29.51 Aligned_cols=95 Identities=11% Similarity=0.059 Sum_probs=52.5
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCC
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDP-SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLT 379 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSP-dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~ 379 (701)
+.|.+.|+........+...-..-..|+++| .|.++.|--.+...|..+++.-. ....+. .+.
T Consensus 102 ~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~------------~~~~l~---~~~- 165 (628)
T 4a0p_A 102 NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS------------ERTTLV---PNV- 165 (628)
T ss_dssp TEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC------------SCEEEE---CSC-
T ss_pred CEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC------------ceEEEE---CCC-
Confidence 5667777665433222323334568999999 46555553221222555554321 112221 222
Q ss_pred cccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCC
Q 005349 380 NAVIQDISFSDDSNWIMISS-SRGTSHLFAINPL 412 (701)
Q Consensus 380 ~a~I~~iaFSpDg~~lAsgS-~dgTI~Iwdl~~~ 412 (701)
..-..|+++++++.|..+. ..++|..+++...
T Consensus 166 -~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 166 -GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp -SSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred -CCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 2368999999877766654 4567888888643
No 319
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=38.05 E-value=4.7e+02 Score=29.29 Aligned_cols=79 Identities=11% Similarity=-0.094 Sum_probs=43.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCC
Q 005349 322 SPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSR 401 (701)
Q Consensus 322 ~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~d 401 (701)
..-+.|++++++..|.-++.....|..+|+... ....+..+.-. .-..|++..| +...+-...
T Consensus 171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~---------------~~~~~~~~~~~-~P~gi~~~~~-~ly~td~~~ 233 (619)
T 3s94_A 171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT---------------NRQAVVKGSLP-HPFALTLFED-ILYWTDWST 233 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTCCEEEESSSCC---------------EEC----------CCCEEESSS-EEEEECTTT
T ss_pred CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC---------------ccEEEEeCCCC-CceEEEEeCC-EEEEecCCC
Confidence 456889999987777777776555777776432 11111111111 1346777766 444454556
Q ss_pred CcEEEEecCCCCCcee
Q 005349 402 GTSHLFAINPLGGSVN 417 (701)
Q Consensus 402 gTI~Iwdl~~~g~~~~ 417 (701)
++|...|..+......
T Consensus 234 ~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 234 HSILACNKYTGEGLRE 249 (619)
T ss_dssp CSEEEEESSSCCCCEE
T ss_pred CEEEEEECCCCcccEE
Confidence 7787777765443333
No 320
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=37.25 E-value=64 Score=37.12 Aligned_cols=96 Identities=7% Similarity=-0.054 Sum_probs=49.5
Q ss_pred CeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCc
Q 005349 301 GMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTN 380 (701)
Q Consensus 301 G~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~ 380 (701)
+.|.++++........+...-..-..|+|+|++..|..++.....|.++++... ..+.+.... +. .
T Consensus 519 ~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~------------~~~~~~~~~-~~-~ 584 (699)
T 1n7d_A 519 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG------------NRKTILEDE-KR-L 584 (699)
T ss_dssp CCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS------------CCEEECCCS-SS-C
T ss_pred CeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC------------ceEEEEecC-Cc-C
Confidence 567777665432211222222334679999986666666665556888887532 111111110 10 0
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 381 AVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 381 a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
.....|++..+ +.+.+....++|..++..+
T Consensus 585 ~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 585 AHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp SSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred CCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 11345666544 3444555667888887644
No 321
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=35.83 E-value=61 Score=32.36 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeCCCc
Q 005349 324 ISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSSRGT 403 (701)
Q Consensus 324 Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~dgT 403 (701)
-.++.|+|+|.+.++ .||+ | +.+.+...+. ..+.....++-+ +|- ..+..|.|.|||...|+. |+.
T Consensus 90 F~a~~fD~~G~LYav--~dG~-i--yr~~pP~~~~---~~Wl~~a~~vg~--~gw--~~~~~lff~p~G~Lyav~--dg~ 155 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDK-L--YKASPPQSDT---DNWIARATEVGS--GGW--SGFKFLFFHPNGYLYAVH--GQQ 155 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTE-E--EEESCCCSTT---CCHHHHSEEEEC--SSG--GGEEEEEECTTSCEEEEE--TTE
T ss_pred ceEEEECCCCCEEEe--CCCE-E--EEeCCCcCCC---CceeccccEecc--CCC--CceEEEEECCCceEEEEe--CCc
Confidence 367999999999988 4586 3 3333321111 111111122211 121 248999999999999888 666
Q ss_pred E
Q 005349 404 S 404 (701)
Q Consensus 404 I 404 (701)
+
T Consensus 156 l 156 (236)
T 1tl2_A 156 F 156 (236)
T ss_dssp E
T ss_pred E
Confidence 4
No 322
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=35.22 E-value=3.5e+02 Score=30.41 Aligned_cols=97 Identities=10% Similarity=-0.046 Sum_probs=55.0
Q ss_pred CCeEEEEECCCCc-EEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccC
Q 005349 300 VGMVIVRDIVSKN-VIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGL 378 (701)
Q Consensus 300 dG~V~IwDl~s~~-~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~ 378 (701)
...|++.|+.... ....+.........|+|++.+..|.-++.....|..+++... . .....+..+.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~------------~-~~~~v~~~~~ 83 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT------------E-SVQNVVVSGL 83 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------------CEEEECSSC
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCC------------C-ceEEEEeCCC
Confidence 3568888887643 222222334567899999977766666766555777776532 0 0111222232
Q ss_pred CcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCC
Q 005349 379 TNAVIQDISFSDDSN-WIMISSSRGTSHLFAINP 411 (701)
Q Consensus 379 ~~a~I~~iaFSpDg~-~lAsgS~dgTI~Iwdl~~ 411 (701)
.....||+.+.++ +..+-+..++|.+.++..
T Consensus 84 --~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG 115 (619)
T 3s94_A 84 --LSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 115 (619)
T ss_dssp --SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred --CCcCeEEEEecCCEEEEEeCCCCEEEEEECCC
Confidence 2478999999555 555555678888888763
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.84 E-value=1.1e+02 Score=36.78 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=30.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCcee
Q 005349 382 VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 417 (701)
Q Consensus 382 ~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~ 417 (701)
.|.+++..+|..++.+-+.|+++|||++.+.....+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 478899999999999999999999999988654443
No 324
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=30.34 E-value=5.1e+02 Score=27.35 Aligned_cols=106 Identities=14% Similarity=0.249 Sum_probs=68.7
Q ss_pred CCCcEEEEeccCCeEEEEecCCCCeeEEeee-ccCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVSR-YDGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 16 ~~~~vL~~g~~~g~qVwdv~~~~~~~elvs~-~dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
+.++|+++=..+.+||+|++.. .++-+. -..+|-+|+++-. ..||++++
T Consensus 76 P~~~ViALrag~~LQiFnletK---~klks~~~~e~VvfWkWis~---------------~~L~lVT~------------ 125 (365)
T 2xzh_A 76 PASKVIALKAGKTLQIFNIEMK---SKMKAHTMTDDVTFWKWISL---------------NTVALVTD------------ 125 (365)
T ss_dssp SSSSEEEEEETTEEEEEETTTT---EEEEEEECSSCEEEEEECSS---------------SEEEEEES------------
T ss_pred CCccEEEEecCCeEEEechHHh---hhhcceecCCccEEEEecCC---------------CeEEEEcC------------
Confidence 4588999987888999999873 222231 2578999999731 36899986
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEECCCC-cEEEEEec-----CCCEEEEEec--CCEEEE-E---eC----CEEE
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQ-SYVHMLKF-----RSPIYSVRCS--SRVVAI-C---QA----AQVH 158 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg-~~v~tL~f-----~s~V~sV~~s--~~~LaV-a---~~----~~I~ 158 (701)
+.|.-|++... ..++.+.. ..+|.+-+.+ .+.+++ + .+ +.+.
T Consensus 126 ----------------------taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQ 183 (365)
T 2xzh_A 126 ----------------------NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 183 (365)
T ss_dssp ----------------------SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEE
T ss_pred ----------------------CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEE
Confidence 45889998743 56666653 3577777775 355544 2 12 4677
Q ss_pred EEECCCCceeEEEecC
Q 005349 159 CFDAATLEIEYAILTN 174 (701)
Q Consensus 159 iwDl~t~~~~~tl~t~ 174 (701)
+|..+... -+.+++|
T Consensus 184 LYS~er~~-sQ~ieGh 198 (365)
T 2xzh_A 184 LYSVDRKV-SQPIEGH 198 (365)
T ss_dssp EEETTTTE-EEEECCS
T ss_pred EEeecccc-cceeeee
Confidence 77766532 3455554
No 325
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=29.97 E-value=1.6e+02 Score=29.89 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEEEEcCCCCEEEEEeC
Q 005349 323 PISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDISFSDDSNWIMISSS 400 (701)
Q Consensus 323 ~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~iaFSpDg~~lAsgS~ 400 (701)
.+..|.+.+++++++.+. +|. ||....+ | .... .+..+. ...+.+++|.+++++++.+..
T Consensus 123 ~~~~i~~~~~~~~~~~~~-~g~---v~~S~Dg--G---------~tW~--~~~~~~-~~~~~~~~~~~~~~~~~~g~~ 182 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMITN-VGA---IYRTKDS--G---------KNWQ--ALVQEA-IGVMRNLNRSPSGEYVAVSSR 182 (327)
T ss_dssp CEEEEEEEETTEEEEEET-TCC---EEEESST--T---------SSEE--EEECSC-CCCEEEEEECTTSCEEEEETT
T ss_pred CeEEEEEECCCCEEEEeC-Ccc---EEEEcCC--C---------CCCE--EeecCC-CcceEEEEEcCCCcEEEEECC
Confidence 356677777888777664 555 3333322 0 0122 112222 235889999999998877754
No 326
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=29.17 E-value=6.7e+02 Score=28.36 Aligned_cols=76 Identities=20% Similarity=0.211 Sum_probs=47.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEE-----E-----eccCCcccEEEEEEcC
Q 005349 321 KSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYR-----L-----QRGLTNAVIQDISFSD 390 (701)
Q Consensus 321 ~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~-----l-----~rG~~~a~I~~iaFSp 390 (701)
...|.+|..+++|.+.+....+| |.++|..... ..+... + ..+.....|.+|...+
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~G--l~~~~~~~~~------------~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~ 322 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNG--IMILDLQQNQ------------FLLPEQIRFEFIREGDNNYSLSNASARYIFQDS 322 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSC--EEEEETTCC---------------------CEEECBCSSTTSBSSSCEEEEEECS
T ss_pred CceEEEEEECCCCCEEEEeCCCC--eEEECCCCCe------------eeeeeccccccccCCCCCCCCCCCeEEEEEEeC
Confidence 35799999999999877544355 7888876541 011110 0 0122334599999999
Q ss_pred CCCEEEEEeCCCcEEEEecCC
Q 005349 391 DSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 391 Dg~~lAsgS~dgTI~Iwdl~~ 411 (701)
+|. |-.|+.++-|..|+...
T Consensus 323 ~g~-lWigt~~~Gl~~~~~~~ 342 (781)
T 3v9f_A 323 FNN-IWIGTWGGGINFISNAP 342 (781)
T ss_dssp SCC-EEEEEBSSCEEEECSSC
T ss_pred CCC-EEEEecCCeEEEeCCCC
Confidence 886 44566666777777653
No 327
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=27.50 E-value=2.7e+02 Score=28.62 Aligned_cols=81 Identities=11% Similarity=0.256 Sum_probs=45.2
Q ss_pred EEEeecCCCCeEEEEEcC-------CCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcccEEEE
Q 005349 314 IAQFRAHKSPISALCFDP-------SGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNAVIQDI 386 (701)
Q Consensus 314 i~~~~~H~~~Is~laFSP-------dG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a~I~~i 386 (701)
+..+..|. ....++|.. +|++|++. ..+..|...++..+ .......+..+ ....+.+|
T Consensus 264 ~~~~~~~~-ap~G~~~y~g~~fp~~~g~l~v~~-~~~~~v~~~~~~~~------------~~~~~~~~~~~-~~~rp~~v 328 (353)
T 2g8s_A 264 VFYWKDSP-AVSGMAFYNSDKFPQWQQKLFIGA-LKDKDVIVMSVNGD------------KVTEDGRILTD-RGQRIRDV 328 (353)
T ss_dssp SEEESSCC-CEEEEEEECCSSSGGGTTEEEEEE-TTTTEEEEEEEETT------------EEEEEEEESGG-GCCCEEEE
T ss_pred eEEeCCCc-CcceeEEECCccCcccCCcEEEEE-ccCCEEEEEEeCCC------------eEeeeEEcccC-CCCceeEE
Confidence 33444454 667888875 57776654 44444666665532 11111223211 12358999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecC
Q 005349 387 SFSDDSNWIMISSSRGTSHLFAIN 410 (701)
Q Consensus 387 aFSpDg~~lAsgS~dgTI~Iwdl~ 410 (701)
++.|||...++. ++..=+||.|.
T Consensus 329 ~~~pdG~lyv~t-d~~~g~I~ri~ 351 (353)
T 2g8s_A 329 RTGPDGYLYVLT-DESSGELLKVS 351 (353)
T ss_dssp EECTTSCEEEEE-CSTTEEEEEEE
T ss_pred EECCCCcEEEEE-eCCCCEEEEEe
Confidence 999999865543 33344677764
No 328
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=27.11 E-value=7e+02 Score=27.92 Aligned_cols=99 Identities=8% Similarity=-0.055 Sum_probs=57.7
Q ss_pred eEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEeccCCcc
Q 005349 302 MVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQRGLTNA 381 (701)
Q Consensus 302 ~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~rG~~~a 381 (701)
.|...++........+. .-.....|++++++..|.-++.....|..+|+... . +.+ +..+. .
T Consensus 147 ~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~------------~-~~v--~~~~l--~ 208 (628)
T 4a0p_A 147 KIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL------------N-REV--IADDL--P 208 (628)
T ss_dssp EEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC------------S-CEE--EEECC--S
T ss_pred EEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC------------c-eEE--eeccC--C
Confidence 45555554332222222 33456889999998888888877777888887532 1 222 22222 1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceeec
Q 005349 382 VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNFQ 419 (701)
Q Consensus 382 ~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~~ 419 (701)
.-..|++.. ++.+.+-...++|...|..+......+.
T Consensus 209 ~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 209 HPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEe
Confidence 256788765 4455555567888888876654444443
No 329
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=26.84 E-value=75 Score=38.82 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=30.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCcee
Q 005349 382 VIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVN 417 (701)
Q Consensus 382 ~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~ 417 (701)
.|.+++..+|.+++.+-+.|+++|||++.+.....+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t 274 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 274 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence 366778888999999999999999999988655443
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.70 E-value=6.7e+02 Score=27.55 Aligned_cols=106 Identities=14% Similarity=0.244 Sum_probs=67.9
Q ss_pred CCCcEEEEeccCCeEEEEecCCCCeeEEeeec-cCCEEEEEEeeCCCCCccccCccccCCCEEEEEeCCCCcCCccccCC
Q 005349 16 ATRRVLLLGYRSGFQVWDVEEADNVHDLVSRY-DGPVSFMQMLPRPITSKRSRDKFAEVRPLLVFCADGSRSCGTKVQDG 94 (701)
Q Consensus 16 ~~~~vL~~g~~~g~qVwdv~~~~~~~elvs~~-dG~V~~l~~lp~p~~~~~~~d~f~~~rpllavv~~g~~~~~~~~~d~ 94 (701)
+.++|+++=..+.+||||++.. ..+-+.. ..+|-+|+++-. ..||++++
T Consensus 75 P~~~iiALrag~~lQiFnle~K---~klks~~~~e~VvfWkWis~---------------~~l~lVT~------------ 124 (494)
T 1bpo_A 75 PASKVIALKAGKTLQIFNIEMK---SKMKAHTMTDDVTFWKWISL---------------NTVALVTD------------ 124 (494)
T ss_dssp SSSSCEEEEETTEEEEEETTTT---EEEEEEECSSCCCEEEEEET---------------TEEEEECS------------
T ss_pred CCCcEEEEecCCeEEEEchHHh---hhhcceecCCCceEEEecCC---------------CeEEEEcC------------
Confidence 4578888887888999999863 2233321 467899999742 36888875
Q ss_pred cccccCCCCCCCCCCCCCCCCCcEEEEEECCCC-cEEEEEec-----CCCEEEEEec--CCEEEE-E---e----CCEEE
Q 005349 95 LATACNGTSANYHDLGNGSSVPTVVHFYSLRSQ-SYVHMLKF-----RSPIYSVRCS--SRVVAI-C---Q----AAQVH 158 (701)
Q Consensus 95 ~~~~~~g~~~~~~~~~~~~~~~~tVriWdl~tg-~~v~tL~f-----~s~V~sV~~s--~~~LaV-a---~----~~~I~ 158 (701)
+.|.-|++... ..++.+.. ...|.+-+.+ .+.+++ + . .+.+.
T Consensus 125 ----------------------taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQ 182 (494)
T 1bpo_A 125 ----------------------NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 182 (494)
T ss_dssp ----------------------SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEE
T ss_pred ----------------------CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEE
Confidence 55889998643 46666643 3577777775 355543 2 1 24677
Q ss_pred EEECCCCceeEEEecC
Q 005349 159 CFDAATLEIEYAILTN 174 (701)
Q Consensus 159 iwDl~t~~~~~tl~t~ 174 (701)
+|..+... -+.+++|
T Consensus 183 LYS~er~~-sQ~ieGh 197 (494)
T 1bpo_A 183 LYSVDRKV-SQPIEGH 197 (494)
T ss_dssp EEESTTCC-EEEECCS
T ss_pred Eeeccccc-cchheee
Confidence 77766533 3445554
No 331
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=25.85 E-value=1.4e+02 Score=33.93 Aligned_cols=103 Identities=13% Similarity=0.027 Sum_probs=60.7
Q ss_pred eEEEEECCC----C-cEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCC--CCCCccCCCCceeEEEEE
Q 005349 302 MVIVRDIVS----K-NVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGIL--GTSSACDAGTSYVHLYRL 374 (701)
Q Consensus 302 ~V~IwDl~s----~-~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~--~~~s~~~~~~~~~~l~~l 374 (701)
.|.|.|... + ..+..+..-.+| -.+.++|||++++.++.-...+.|+|+..... ... ...... ...-+.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksP-HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k-~~~~~~--~~~ae~ 374 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNP-HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGK-LADPRD--VIVGEP 374 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSC-CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTC-CSCGGG--GEEECC
T ss_pred CeeEEccccccccCCceEEEEeCCCCC-cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcc-ccCccc--ceEeec
Confidence 467777765 2 233444433322 34789999999999988766699999874200 000 000000 111222
Q ss_pred eccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q 005349 375 QRGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINP 411 (701)
Q Consensus 375 ~rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~ 411 (701)
+-|.. -.-.+|.++|.-..+--.|..|-.|++..
T Consensus 375 e~GlG---PlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 375 ELGLG---PLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp BCCSC---EEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred cCCCc---ccEEEECCCCceEeeeeecceEEEEeccH
Confidence 22432 45689999995445555799999999964
No 332
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=22.21 E-value=2.6e+02 Score=28.31 Aligned_cols=98 Identities=5% Similarity=-0.094 Sum_probs=0.0
Q ss_pred ccCCCCeEEEEECCCCcEEEEeecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEEcCCCCCCCCCccCCCCceeEEEEEe
Q 005349 296 DADNVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGILLVTASVQGHNINIFKIIPGILGTSSACDAGTSYVHLYRLQ 375 (701)
Q Consensus 296 ~~~~dG~V~IwDl~s~~~i~~~~~H~~~Is~laFSPdG~lLaTaS~dGt~I~Iwdl~~~~~~~~s~~~~~~~~~~l~~l~ 375 (701)
+......|..-++............. ++|+|+|+.|.-.+.....|.+-++..+ ....+.
T Consensus 124 ~~~~~~~Iy~~~~dGs~~~~lt~~~~-----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~---------------~~~~l~ 183 (302)
T 3s25_A 124 DTQTATSLYRIRIDGEEKKKIKNHYL-----FTCNTSDRYFYYNNPKNGQLYRYDTASQ---------------SEALFY 183 (302)
T ss_dssp SSSSCEEEEEEETTSCCCEEEESSCC-----CCSEEETTEEEEECTTTCCEEEEETTTT---------------EEEEEE
T ss_pred cCCCCceEEEEECCCCCeEEEeCCCc-----eEeeEECCEEEEEeCCCceEEEEECCCC---------------CEEEEe
Q ss_pred ccCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCCCceee
Q 005349 376 RGLTNAVIQDISFSDDSNWIMISSSRGTSHLFAINPLGGSVNF 418 (701)
Q Consensus 376 rG~~~a~I~~iaFSpDg~~lAsgS~dgTI~Iwdl~~~g~~~~~ 418 (701)
.+ -..+.++|++++|+-....+.-+|+.+...|.....
T Consensus 184 ~~-----~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~ 221 (302)
T 3s25_A 184 DC-----NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVV 221 (302)
T ss_dssp CS-----CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEE
T ss_pred CC-----CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEE
No 333
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=21.83 E-value=5.5e+02 Score=24.78 Aligned_cols=50 Identities=4% Similarity=0.036 Sum_probs=28.0
Q ss_pred cEEEEEECCCCc---EEEEEecCC---CEEEEEecCCEEEEEe------CCEEEEEECCCCc
Q 005349 117 TVVHFYSLRSQS---YVHMLKFRS---PIYSVRCSSRVVAICQ------AAQVHCFDAATLE 166 (701)
Q Consensus 117 ~tVriWdl~tg~---~v~tL~f~s---~V~sV~~s~~~LaVa~------~~~I~iwDl~t~~ 166 (701)
+.+.+||+.+++ -...-..+. ...++.+++++++++. ...+.+||+.+.+
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 568999999887 333222222 2233344555555532 2367777777654
Done!