Query 005350
Match_columns 701
No_of_seqs 353 out of 2471
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 22:04:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005350.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005350hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2302 T-type voltage-gated C 100.0 4.3E-61 9.2E-66 523.7 37.6 465 139-693 1162-1674(1956)
2 KOG2301 Voltage-gated Ca2+ cha 100.0 3.3E-62 7.1E-67 585.2 28.3 464 138-694 877-1391(1592)
3 KOG2301 Voltage-gated Ca2+ cha 100.0 1.1E-53 2.3E-58 512.2 36.8 536 136-694 476-1095(1592)
4 KOG2302 T-type voltage-gated C 100.0 5.9E-48 1.3E-52 421.2 17.4 518 137-666 655-1355(1956)
5 KOG3713 Voltage-gated K+ chann 99.9 7.7E-25 1.7E-29 232.0 19.6 201 124-336 236-443 (477)
6 PLN03223 Polycystin cation cha 99.9 2.9E-22 6.4E-27 230.0 15.7 274 39-329 1095-1428(1634)
7 PF00520 Ion_trans: Ion transp 99.9 5.7E-21 1.2E-25 188.6 14.5 182 138-319 2-200 (200)
8 KOG1545 Voltage-gated shaker-l 99.8 5.4E-22 1.2E-26 199.8 3.3 188 134-328 254-451 (507)
9 KOG4390 Voltage-gated A-type K 99.8 1E-20 2.2E-25 192.0 -7.2 186 135-329 229-415 (632)
10 PF00520 Ion_trans: Ion transp 99.7 2.9E-18 6.4E-23 169.2 7.7 193 481-694 1-195 (200)
11 PF08016 PKD_channel: Polycyst 99.7 9.7E-17 2.1E-21 178.1 11.1 266 39-325 131-424 (425)
12 KOG3599 Ca2+-modulated nonsele 99.6 3.2E-15 7E-20 172.7 17.8 301 9-330 356-686 (798)
13 KOG3713 Voltage-gated K+ chann 99.5 1.5E-13 3.3E-18 146.6 17.0 164 432-595 172-360 (477)
14 KOG1545 Voltage-gated shaker-l 99.4 4.7E-12 1E-16 128.6 13.6 173 431-611 170-384 (507)
15 PLN03223 Polycystin cation cha 99.3 2E-11 4.4E-16 142.0 14.0 157 479-655 1178-1385(1634)
16 TIGR00870 trp transient-recept 99.1 8.8E-09 1.9E-13 122.8 24.1 199 139-339 395-631 (743)
17 KOG1419 Voltage-gated K+ chann 98.9 1.7E-08 3.8E-13 108.5 12.6 181 135-325 127-324 (654)
18 PF08016 PKD_channel: Polycyst 98.7 1.7E-07 3.7E-12 104.3 16.3 146 480-645 214-381 (425)
19 KOG3599 Ca2+-modulated nonsele 98.7 4.1E-07 9E-12 106.2 16.0 148 478-644 467-637 (798)
20 KOG3609 Receptor-activated Ca2 98.5 6.4E-06 1.4E-10 93.8 19.6 203 139-341 387-629 (822)
21 KOG4390 Voltage-gated A-type K 98.5 4.3E-09 9.3E-14 108.1 -5.3 198 432-654 165-380 (632)
22 KOG1419 Voltage-gated K+ chann 98.5 9.7E-07 2.1E-11 95.3 11.9 165 433-604 76-256 (654)
23 PLN03192 Voltage-dependent pot 98.1 0.00011 2.4E-09 88.7 18.8 161 137-302 96-286 (823)
24 TIGR00870 trp transient-recept 98.0 3.5E-05 7.6E-10 92.2 13.6 200 479-695 391-607 (743)
25 KOG0510 Ankyrin repeat protein 97.8 0.0017 3.7E-08 73.9 19.3 167 157-328 586-762 (929)
26 PLN03192 Voltage-dependent pot 97.0 0.0046 1E-07 74.8 12.9 73 446-521 63-150 (823)
27 KOG3614 Ca2+/Mg2+-permeable ca 96.8 0.098 2.1E-06 63.3 21.0 188 146-338 835-1057(1381)
28 KOG3609 Receptor-activated Ca2 96.8 0.024 5.3E-07 65.4 15.1 152 484-639 391-559 (822)
29 KOG3533 Inositol 1,4,5-trispho 96.5 0.042 9.1E-07 65.3 14.2 51 205-255 2396-2446(2706)
30 KOG3676 Ca2+-permeable cation 96.4 0.39 8.4E-06 55.6 21.4 105 227-335 539-659 (782)
31 KOG0498 K+-channel ERG and rel 96.4 0.13 2.8E-06 60.0 17.8 162 137-307 121-332 (727)
32 PRK10537 voltage-gated potassi 96.1 0.083 1.8E-06 58.0 13.4 92 195-295 106-197 (393)
33 KOG3733 Mucolipidin and relate 95.8 0.13 2.9E-06 54.7 12.9 118 202-328 385-512 (566)
34 KOG1420 Ca2+-activated K+ chan 95.5 0.017 3.8E-07 63.1 5.2 136 137-285 166-308 (1103)
35 PF13499 EF-hand_7: EF-hand do 94.8 0.026 5.6E-07 44.9 3.1 64 342-406 2-65 (66)
36 PF07885 Ion_trans_2: Ion chan 93.6 0.48 1E-05 39.2 8.4 76 239-324 3-78 (79)
37 cd05022 S-100A13 S-100A13: S-1 93.2 0.39 8.5E-06 40.9 7.4 67 340-411 8-77 (89)
38 cd00213 S-100 S-100: S-100 dom 92.6 0.83 1.8E-05 38.6 8.6 73 338-411 6-81 (88)
39 smart00027 EH Eps15 homology d 92.0 0.92 2E-05 39.1 8.3 67 339-412 9-75 (96)
40 COG5126 FRQ1 Ca2+-binding prot 91.7 0.46 9.9E-06 45.0 6.4 65 338-407 90-154 (160)
41 cd05027 S-100B S-100B: S-100B 91.0 1.3 2.9E-05 37.6 8.1 70 340-410 8-80 (88)
42 cd00052 EH Eps15 homology doma 90.8 0.97 2.1E-05 35.6 6.7 62 343-411 2-63 (67)
43 cd05025 S-100A1 S-100A1: S-100 90.7 1.5 3.3E-05 37.4 8.2 71 340-411 9-82 (92)
44 KOG0498 K+-channel ERG and rel 90.2 1.2 2.6E-05 52.1 9.3 130 446-578 79-231 (727)
45 cd05031 S-100A10_like S-100A10 89.3 1.7 3.8E-05 37.2 7.5 71 340-411 8-81 (94)
46 cd05026 S-100Z S-100Z: S-100Z 89.2 2.3 4.9E-05 36.6 8.1 70 341-411 11-83 (93)
47 cd05023 S-100A11 S-100A11: S-1 87.5 3.1 6.8E-05 35.4 7.8 71 340-411 9-82 (89)
48 cd00051 EFh EF-hand, calcium b 87.0 2.2 4.8E-05 32.1 6.2 60 342-406 2-61 (63)
49 KOG3684 Ca2+-activated K+ chan 86.6 18 0.00039 39.7 14.4 86 234-325 257-342 (489)
50 KOG3614 Ca2+/Mg2+-permeable ca 86.4 3.1 6.8E-05 51.0 9.5 157 433-597 779-947 (1381)
51 KOG0027 Calmodulin and related 86.2 2.6 5.7E-05 39.6 7.4 64 339-407 84-147 (151)
52 PF00036 EF-hand_1: EF hand; 85.7 0.66 1.4E-05 30.5 2.1 26 383-408 2-27 (29)
53 KOG0027 Calmodulin and related 85.1 3.3 7.2E-05 38.9 7.4 66 340-410 8-73 (151)
54 KOG0500 Cyclic nucleotide-gate 84.6 25 0.00055 39.0 14.5 106 136-254 32-150 (536)
55 PTZ00183 centrin; Provisional 84.2 3.4 7.5E-05 38.5 7.2 63 340-407 90-152 (158)
56 KOG0499 Cyclic nucleotide-gate 83.3 78 0.0017 36.1 17.6 172 136-327 264-459 (815)
57 KOG0510 Ankyrin repeat protein 82.6 13 0.00027 43.7 11.7 128 495-646 581-708 (929)
58 PTZ00184 calmodulin; Provision 81.0 4.8 0.0001 37.0 6.8 61 341-406 85-145 (149)
59 cd00252 SPARC_EC SPARC_EC; ext 80.6 7.3 0.00016 35.0 7.4 63 336-407 44-106 (116)
60 PTZ00184 calmodulin; Provision 80.3 6.9 0.00015 35.9 7.6 64 340-408 11-74 (149)
61 PF13833 EF-hand_8: EF-hand do 80.2 3.5 7.7E-05 31.0 4.6 50 354-407 2-51 (54)
62 KOG0028 Ca2+-binding protein ( 80.1 8.7 0.00019 36.1 7.7 63 340-407 106-168 (172)
63 cd05029 S-100A6 S-100A6: S-100 80.1 12 0.00025 31.8 8.2 68 341-410 11-80 (88)
64 cd05024 S-100A10 S-100A10: A s 79.9 7.5 0.00016 33.2 6.8 56 355-411 22-78 (91)
65 PF14788 EF-hand_10: EF hand; 79.5 3.6 7.8E-05 31.0 4.1 35 376-410 16-50 (51)
66 KOG0036 Predicted mitochondria 79.4 7.2 0.00016 42.1 7.9 63 338-405 80-142 (463)
67 KOG0044 Ca2+ sensor (EF-Hand s 77.4 4.2 9.1E-05 39.9 5.2 68 341-408 101-174 (193)
68 cd05030 calgranulins Calgranul 76.7 15 0.00033 31.0 7.9 58 353-411 23-81 (88)
69 KOG0034 Ca2+/calmodulin-depend 75.8 5.7 0.00012 38.9 5.6 67 340-407 104-173 (187)
70 PTZ00183 centrin; Provisional 75.4 13 0.00028 34.6 8.0 64 340-408 17-80 (158)
71 COG5126 FRQ1 Ca2+-binding prot 74.7 14 0.0003 35.2 7.7 66 339-410 19-84 (160)
72 PF12763 EF-hand_4: Cytoskelet 74.0 12 0.00027 32.8 6.8 65 338-410 8-72 (104)
73 KOG2243 Ca2+ release channel ( 72.6 8 0.00017 47.1 6.5 120 210-329 4798-4928(5019)
74 PF13202 EF-hand_5: EF hand; P 71.3 3.4 7.5E-05 26.1 1.9 23 384-406 2-24 (25)
75 PF13405 EF-hand_6: EF-hand do 69.2 4 8.6E-05 27.0 2.0 26 383-408 2-27 (31)
76 KOG4404 Tandem pore domain K+ 66.0 34 0.00074 36.0 8.9 88 228-320 154-248 (350)
77 KOG0036 Predicted mitochondria 65.6 19 0.00042 39.0 7.2 67 335-405 9-75 (463)
78 PF01007 IRK: Inward rectifier 65.6 55 0.0012 35.2 10.9 62 261-325 80-141 (336)
79 KOG0377 Protein serine/threoni 59.3 57 0.0012 35.7 9.3 71 339-410 546-616 (631)
80 KOG0501 K+-channel KCNQ [Inorg 58.6 1.6E+02 0.0034 33.7 12.6 45 267-315 425-469 (971)
81 PF14658 EF-hand_9: EF-hand do 53.5 32 0.0007 27.5 4.9 58 345-406 3-61 (66)
82 KOG1420 Ca2+-activated K+ chan 53.3 17 0.00036 40.8 4.3 46 478-523 163-209 (1103)
83 PLN02964 phosphatidylserine de 53.1 37 0.00081 39.7 7.4 63 342-409 181-243 (644)
84 PRK12309 transaldolase/EF-hand 52.3 72 0.0016 35.1 9.1 53 339-409 333-385 (391)
85 PF06512 Na_trans_assoc: Sodiu 50.0 4 8.7E-05 41.6 -0.9 24 432-455 216-239 (239)
86 KOG0500 Cyclic nucleotide-gate 49.0 67 0.0014 35.9 8.0 66 455-520 7-85 (536)
87 KOG0037 Ca2+-binding protein, 48.8 60 0.0013 32.3 7.0 95 348-464 102-196 (221)
88 KOG0031 Myosin regulatory ligh 47.5 72 0.0016 30.0 6.8 69 341-409 33-129 (171)
89 KOG0501 K+-channel KCNQ [Inorg 47.0 39 0.00085 38.2 5.9 72 445-519 218-304 (971)
90 KOG3676 Ca2+-permeable cation 43.9 5.9E+02 0.013 30.5 14.9 78 563-645 528-605 (782)
91 KOG0046 Ca2+-binding actin-bun 41.6 69 0.0015 35.9 6.7 67 339-408 18-84 (627)
92 KOG0031 Myosin regulatory ligh 40.6 1E+02 0.0023 29.0 6.7 63 339-406 100-162 (171)
93 KOG0044 Ca2+ sensor (EF-Hand s 37.9 86 0.0019 30.9 6.2 65 343-412 67-131 (193)
94 KOG0377 Protein serine/threoni 36.0 1.2E+02 0.0027 33.2 7.4 78 338-415 462-581 (631)
95 KOG0041 Predicted Ca2+-binding 33.4 1.5E+02 0.0032 29.2 6.8 76 319-407 86-161 (244)
96 smart00054 EFh EF-hand, calciu 29.7 38 0.00082 20.3 1.6 24 384-407 3-26 (29)
97 PF15086 UPF0542: Uncharacteri 28.2 3.3E+02 0.0071 22.2 7.6 14 311-324 30-43 (74)
98 KOG0028 Ca2+-binding protein ( 26.3 2.6E+02 0.0057 26.6 6.9 66 337-407 30-95 (172)
99 PF13499 EF-hand_7: EF-hand do 24.8 55 0.0012 25.4 2.1 28 383-410 2-29 (66)
100 COG2981 CysZ Uncharacterized p 24.5 6.6E+02 0.014 25.6 9.8 91 205-332 13-108 (250)
101 PRK10537 voltage-gated potassi 24.1 3.7E+02 0.008 29.6 9.0 54 546-605 108-161 (393)
102 PLN02964 phosphatidylserine de 24.1 1.9E+02 0.004 34.1 6.9 64 339-410 142-208 (644)
103 KOG3193 K+ channel subunit [In 20.5 28 0.0006 38.8 -0.6 45 269-325 221-265 (1087)
104 PF10591 SPARC_Ca_bdg: Secrete 20.5 1E+02 0.0023 27.4 3.2 21 383-403 90-110 (113)
No 1
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-61 Score=523.69 Aligned_cols=465 Identities=21% Similarity=0.341 Sum_probs=386.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCc----hhhhcccccceehhhHHHHHHHHHHHhhhcCCCCc----cchhhHHHHHHHHHHH
Q 005350 139 EGITLVILIIHTFFPITYEGS----PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAF----NFLPLRIAPYIRVVFF 210 (701)
Q Consensus 139 e~v~~~if~~E~~lk~~~~g~----~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~~~~~~----~~~~lr~~R~lR~lrl 210 (701)
+.+|+++|++|+.+|+++.|+ .+|+++.||.+|++++.++++|+++.... ..+. ..+++|.+|.|||+|.
T Consensus 1162 nyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~as--a~g~kILgVlrvLRlLRtlRpLRv 1239 (1956)
T KOG2302|consen 1162 NYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQAS--AGGAKILGVLRVLRLLRTLRPLRV 1239 (1956)
T ss_pred chHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHhhHHHH
Confidence 699999999999999999884 67999999999999999999999988663 2222 2468888899999999
Q ss_pred HhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------------------------cccccccc
Q 005350 211 ILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTV-------------------------QGNMVFTS 265 (701)
Q Consensus 211 i~~~~~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~~~-------------------------~~~~~F~~ 265 (701)
|.+.++++.++.++..|+|.|+++.++++.++++|+++|.++|+|+- ...+||||
T Consensus 1240 iSra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdn 1319 (1956)
T KOG2302|consen 1240 ISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDN 1319 (1956)
T ss_pred HhhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccch
Confidence 99999999999999999999999999999999999999999999530 12578999
Q ss_pred HHHHHHHHHHHHhcCCCchhhH-----------hhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005350 266 FGTTLYQMFVLFTTSNNPDVWI-----------PAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEM 334 (701)
Q Consensus 266 ~~~s~~~lf~l~T~~~w~dv~~-----------p~~~~~~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~~~~~~~~~~ 334 (701)
.+.++++||++.|-+||.++|+ |..++++|..+|||+|.+|..|+++|||++|+.+||.+..+++.+++
T Consensus 1320 lgqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~Ee 1399 (1956)
T KOG2302|consen 1320 LGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEE 1399 (1956)
T ss_pred HHHHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999984 67789999999999999999999999999999999999888776665
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHHHhhh
Q 005350 335 DRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRF 414 (701)
Q Consensus 335 ~~~r~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i~~~~ 414 (701)
.++|+++.- +.+.+.+
T Consensus 1400 ArRreEKrL-----------------------rrlekkr----------------------------------------- 1415 (1956)
T KOG2302|consen 1400 ARRREEKRL-----------------------RRLEKKR----------------------------------------- 1415 (1956)
T ss_pred HHHHHHHHH-----------------------HHHHHHH-----------------------------------------
Confidence 554443211 1110000
Q ss_pred cccCCccccccCCcccccHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHH
Q 005350 415 QKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEM 494 (701)
Q Consensus 415 ~k~~~~~~~~~~p~~~~s~~r~~~~~iv~~~~f~~~i~~~Illn~i~l~~~~~~~~~~~~~~~~~~~i~~~f~~iF~~E~ 494 (701)
.+..+.++... .+..|+.++....+.+.+.+++++|.+|++.+..|.+ .++......+.+.++.|+++|+.|+
T Consensus 1416 R~Aq~kpyyse-----yt~~rrlIh~~ctShyld~fit~ii~LnvVtms~ehy--qqp~sldealkycny~ft~vfV~Ea 1488 (1956)
T KOG2302|consen 1416 RAAQRKPYYSE-----YTMTRRLIHSKCTSHYLDQFITFIICLNVVTMSEEHY--QQPTSLDEALKYCNYRFTAVFVLEA 1488 (1956)
T ss_pred HhccCCccccc-----ccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--hCcccHHHHhhhcceeeeehhHHHH
Confidence 00000011110 1567899999999999999999999999999999987 4566677889999999999999999
Q ss_pred HHHHhhcCcccccccCcCcchhHHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 005350 495 ALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFL 574 (701)
Q Consensus 495 ilKi~a~G~~~y~~~~wn~fD~ivv~~s~i~~i~~~~~~~~~~~~~~~~~l~~lr~~RvlRllrli~~~~~lr~l~~tl~ 574 (701)
++|.++.|.++||++.||.+|+.+++.++.+..+.-+..+ .....+++++|++|++|+.|++|+++...++|.++.|+.
T Consensus 1489 V~klvafG~rrFfkdrwnqldlaivlls~mgitleeie~n-aalpinptiirimrvlriarvlkllkmatgmralldtvv 1567 (1956)
T KOG2302|consen 1489 VLKLVAFGERRFFKDRWNQLDLAIVLLSVMGITLEEIEIN-AALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVV 1567 (1956)
T ss_pred HHHHHHHhHHHHHhhhhhhhhHHHHHHHHhcccHhheeec-ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988877654422 123357899999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCccccccccccCCCCHHHHHHHHHHHHhccChHHHHHHh
Q 005350 575 TLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQLQ 654 (701)
Q Consensus 575 ~~~~~l~~~~~l~~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~al~tLf~i~t~e~W~~im~~~ 654 (701)
+++|.++++.++.++++++||.+|+++||... ||+.-+..+..++ ..|.||+.|++|||+++||+||+.||.|.
T Consensus 1568 qalpqvgnlgllfmllffiyaalgvelfg~le--c~e~npceglsrh----atf~nfgmafltlfrvstgdnwngimkdt 1641 (1956)
T KOG2302|consen 1568 QALPQVGNLGLLFMLLFFIYAALGVELFGKLE--CNEENPCEGLSRH----ATFENFGMAFLTLFRVSTGDNWNGIMKDT 1641 (1956)
T ss_pred HhcccccchhHHHHHHHHHHHHHHHHHhcccc--cCCCCCccccccc----cchhhhchHhhhheeeccCCcccchhhhh
Confidence 99999999999999999999999999999874 6665554455443 68999999999999999999999999997
Q ss_pred hhhcCCCCCccccccCCCCcce----eeehhhhhhccceeeec
Q 005350 655 RVDRNCLDSSIFRQLLPNNCFT----TIEFGHSFCLGGILCRN 693 (701)
Q Consensus 655 ~~~~~c~~~~~~~~~~~~~cg~----~~~y~~~~~~~~~~~~~ 693 (701)
. +.|+.. ..|-+ +++|..|+....+...|
T Consensus 1642 l--rdc~~e--------~~cls~~~sp~yfvsfvltaqfvlvn 1674 (1956)
T KOG2302|consen 1642 L--RDCTHE--------ESCLSQFVSPLYFVSFVLTAQFVLVN 1674 (1956)
T ss_pred H--hhcccc--------hhhhhhhccchhhhhhhhhhhhHHHH
Confidence 6 445432 23443 46676666655555544
No 2
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-62 Score=585.19 Aligned_cols=464 Identities=22% Similarity=0.390 Sum_probs=389.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCchhhhcccccceehhhHHHHHHHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhccHHH
Q 005350 138 YEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQL 217 (701)
Q Consensus 138 ~e~v~~~if~~E~~lk~~~~g~~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~~R~lR~lrli~~~~~l 217 (701)
.|.+|+.+|++|+++|+++.|...|++|.||++|++++++++++++.+.. ....++.+|.+|+|||||.++..+++
T Consensus 877 ~D~~Ft~iFt~Em~lK~ia~Gf~~y~rn~w~~lDf~Vv~vslisl~~~~~----~~~~ik~lr~lRaLRPLR~i~r~~~m 952 (1592)
T KOG2301|consen 877 ADYIFTYIFTFEMLLKWIAYGFFFYFRNAWNWLDFVVVIVSLISLIASLK----ILSLIKSLRILRALRPLRALSRFPGM 952 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHhhhhHHHhhhHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHcccc
Confidence 49999999999999999999998899999999999999999999988754 22256899999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------------------------------cccccc
Q 005350 218 RDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT-----------------------------------VQGNMV 262 (701)
Q Consensus 218 r~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~~-----------------------------------~~~~~~ 262 (701)
|.++.++.+++|+|+++++++++++++||++|+++|+|. .+.+.+
T Consensus 953 r~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~~~~~~~~~w~n~~~n 1032 (1592)
T KOG2301|consen 953 RVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECESLPRAPRRWWNNRKFN 1032 (1592)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchhhhhhccceEEeccccc
Confidence 999999999999999999999999999999999999963 023567
Q ss_pred cccHHHHHHHHHHHHhcCCCchhhH-----------hhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005350 263 FTSFGTTLYQMFVLFTTSNNPDVWI-----------PAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQV 331 (701)
Q Consensus 263 F~~~~~s~~~lf~l~T~~~w~dv~~-----------p~~~~~~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~~~~~~~ 331 (701)
|||++++++++|+..|.+||+|+|+ |.+..+.+.++||++|++++.|+.+|+|+|||.+||.++.++..
T Consensus 1033 fDnv~~a~laLf~v~tf~GW~~i~~~~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~~~~~ 1112 (1592)
T KOG2301|consen 1033 FDNVGNAMLALFQVATFKGWPDIMYAAIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQKGKAG 1112 (1592)
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHhhhhccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhchhhh
Confidence 9999999999999999999999985 55567788899999999999999999999999999999988765
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHHH
Q 005350 332 SEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (701)
Q Consensus 332 ~~~~~~r~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i~ 411 (701)
.+ +.+.+|.... ...++..
T Consensus 1113 ~~----------------------~~~~eq~~~~-~~~~~l~-------------------------------------- 1131 (1592)
T KOG2301|consen 1113 GT----------------------FMTEEQKKRL-NAAKKLG-------------------------------------- 1131 (1592)
T ss_pred hh----------------------hhhHHHHHHH-HHHHHhc--------------------------------------
Confidence 42 1122221111 0111111
Q ss_pred hhhcccCCccccccCCcccccHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHH
Q 005350 412 LRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYV 491 (701)
Q Consensus 412 ~~~~k~~~~~~~~~~p~~~~s~~r~~~~~iv~~~~f~~~i~~~Illn~i~l~~~~~~~~~~~~~~~~~~~i~~~f~~iF~ 491 (701)
.++.+++.|+ ..++.+.+++.++.++.|++.+..++++|++.++++++ .++......+.+++.+|+.+|+
T Consensus 1132 sk~~~r~ipr--------~~~~~q~~~~~~v~~~~F~~~i~~li~ln~i~l~~~~~--~qs~~~~~~l~~in~vft~~Ft 1201 (1592)
T KOG2301|consen 1132 SKPPQRPIPR--------PRNKLQGLVFDLVTSQAFDYLIMLLIFLNTIIMMVETY--DQSDTYTAILTILNAVFIVLFT 1201 (1592)
T ss_pred CCCCCCCCCC--------CcchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHHH
Confidence 1111112221 23567899999999999999999999999999999987 5566777889999999999999
Q ss_pred HHHHHHHhhcCcccccccCcCcchhHHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 005350 492 LEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVA 571 (701)
Q Consensus 492 ~E~ilKi~a~G~~~y~~~~wn~fD~ivv~~s~i~~i~~~~~~~~~~~~~~~~~l~~lr~~RvlRllrli~~~~~lr~l~~ 571 (701)
+|+++|++|+|++.||+++||+||++++++++++.++..+.+. +.+++...++.|++|+.|++|+++..+.+|.+..
T Consensus 1202 ~E~vLKiiA~~~~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~---~~~~~~~~~~~rl~rV~R~l~Li~~~~~ir~LL~ 1278 (1592)
T KOG2301|consen 1202 IECILKVIALRFRGYFTSAWNVFDFVVTILSIVGIVLSEAVEK---YESSPTLLRFLRLFRVGRFLRLIPQAKTIRTLLL 1278 (1592)
T ss_pred HHHHHHHHHhhhhHhccccchheEeeeeeHhHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHHHhccccchhHHHHH
Confidence 9999999999999999999999999999999999998876643 2234567899999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCccccccccccCCCCHHHHHHHHHHHHhccChHHHH
Q 005350 572 TFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWM 651 (701)
Q Consensus 572 tl~~~~~~l~~~~~l~~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~al~tLf~i~t~e~W~~im 651 (701)
|++.|+|++.++.+++++++++||++|||+||....+ .+++ ++||++|++|++.||++.|||||+++|
T Consensus 1279 t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~--------~i~~----~~NF~tf~~a~i~LFr~~Tge~W~~im 1346 (1592)
T KOG2301|consen 1279 TLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKLG--------GIND----HNNFRTFPNSMVVLFRCATGEGWNDIM 1346 (1592)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheecc--------ccCC----CcccccchhheeeeeehhhhhhHHHHH
Confidence 9999999999999999999999999999999999875 1212 589999999999999999999999999
Q ss_pred HHhhhhc-CCCCCccccccCCCCcce-eeehh---hhhhccceeeecc
Q 005350 652 QLQRVDR-NCLDSSIFRQLLPNNCFT-TIEFG---HSFCLGGILCRNG 694 (701)
Q Consensus 652 ~~~~~~~-~c~~~~~~~~~~~~~cg~-~~~y~---~~~~~~~~~~~~~ 694 (701)
.+++.+. .|++...-. ++|||+ +.+|. .|+.|.-.|.+|.
T Consensus 1347 ~~~l~s~p~Cdp~~~~~---~~dCGn~~~Ai~YF~Sf~iIs~~IvvNL 1391 (1592)
T KOG2301|consen 1347 DDCLNSKPFCDPDDGNN---GTDCGNPTVAIIYFVSWILISSYIVVNL 1391 (1592)
T ss_pred HHHhcCCCCCCCCCCCc---ccccCCCCcceehhhHHHHHHHHHHHHH
Confidence 9999954 699865421 239995 44444 4445555444443
No 3
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-53 Score=512.15 Aligned_cols=536 Identities=18% Similarity=0.272 Sum_probs=387.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhhcccccceehhhHHHHHHHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhccH
Q 005350 136 LVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIR 215 (701)
Q Consensus 136 ~~~e~v~~~if~~E~~lk~~~~g~~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~~R~lR~lrli~~~~ 215 (701)
.+.|.+|+++|+.|+.+|+++.|++.||++.||++|.+++++.++... . .......++|.+|+||++|++++++
T Consensus 476 ~~~~~vF~~lF~~Em~~ki~al~~~~yF~~~~n~fD~~iv~l~~~~~~---~---~~~~g~svLr~frllRIfkl~k~wp 549 (1592)
T KOG2301|consen 476 YLGNVVFTGLFTVEMILKIYALGPRNYFRRGWNIFDLIIVLLSLLELL---L---KNVYGLSVLRSFRLLRIFKLIKSWP 549 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHhhhcchheEEEEehhhHHhc---c---cchHHHHHHHHHHHHHHHHHHHhhH
Confidence 456999999999999999999999999999999999999985555543 1 1123567999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc----ccccccHHHHHHHHHHHHhcCCCchhhHhhhc
Q 005350 216 QLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQG----NMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYK 291 (701)
Q Consensus 216 ~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~~~~~----~~~F~~~~~s~~~lf~l~T~~~w~dv~~p~~~ 291 (701)
.++.+++++.++.+.++++.+++++++++||++|||+||+..+. ..+|++++.|++++|| +|+|+|.|+|+....
T Consensus 550 ~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~~~~~~~~~~fp~sfl~vFq-lt~e~W~evm~~~~~ 628 (1592)
T KOG2301|consen 550 TLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLHCDIHWHFTDFPHSFLSVFQ-ITCEEWTDVMWDCME 628 (1592)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCCCCCccchhhCHHHHHHHHH-HcCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999975432 3589999999999999 899999999987553
Q ss_pred --cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--H-H--HHHHhhccccCCC----CCHH
Q 005350 292 --ASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRT--L-G--KAFNLIDNYNVGF----LNKE 360 (701)
Q Consensus 292 --~~~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~~~~~~~~~~~~~r~~~--l-~--~af~~L~~~~~~~----l~~~ 360 (701)
.+.+.++||+.++++|+++++|+|+|++.+|+.....+..++..++.+.. . + +..+..+...... ..+.
T Consensus 629 ~~~~~~~~i~Fi~~~l~gn~vvLnlFlAl~~~n~~~~el~~~e~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 708 (1592)
T KOG2301|consen 629 AAGQPLCAIYFIAYFLFGNLVVLNLFLALILDNFESDELKKPEQLKEREALQLARSRIPKGLRVVKAFITRPFMAAMRKM 708 (1592)
T ss_pred HhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCChhhhhhHHhhhhhhhhhhhhhhhHhhhhcchhhHhhccc
Confidence 45778999999999999999999999999999754422222211111000 0 0 0000000000000 0000
Q ss_pred HHHHHHHHhhhcc----------------CCCC-------C-ChHHHHHHhhhhcccCCcccch----hhh-hhhHHHH-
Q 005350 361 QCIKLFEELNKYR----------------TLPN-------I-SREEFELIFDELDDTHDFKINL----DEF-ADLCNAI- 410 (701)
Q Consensus 361 q~~~~~~~l~~~~----------------~~~~-------~-~~~~~~~l~~~~d~~~~~~i~~----~ef-~~~~~~i- 410 (701)
...+......+.. ..++ . ..++.+.... +...+.+... +|. ....+..
T Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~e~~~~~~~~~~~~ 786 (1592)
T KOG2301|consen 709 PKVRDSAVDHSLEIESNITEDEEFPKRIMKSNGSSRTSGSLSENDDASFISR--STKKAPKENAEQGEIEIRKLQLKRQE 786 (1592)
T ss_pred chhhhhhhhhchhcccccchhcccccccccccccccccccccchhhhhcccc--cccccccccccccccchhhhhhhhhh
Confidence 0000000000000 0000 0 0000011110 0000000000 000 0000000
Q ss_pred -----------H-hhhcccCC--------ccccccCCcccccHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 005350 411 -----------A-LRFQKEDV--------PSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDI 470 (701)
Q Consensus 411 -----------~-~~~~k~~~--------~~~~~~~p~~~~s~~r~~~~~iv~~~~f~~~i~~~Illn~i~l~~~~~~~~ 470 (701)
. ...+++.+ ++..+..-..+.+ .|+.|+.++.|.+|..++..+|+++.+.++.|.+...
T Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-~r~~c~~iv~~~~f~~~I~~~illSs~ala~ed~~~~ 865 (1592)
T KOG2301|consen 787 AEETRNRIEEDLREFCKKEVCSKYGSQCDGSVDSAKGKSWFN-IRKTCHIIVEHDWFEAFILTVILISSLALAFEDVRGE 865 (1592)
T ss_pred hhhhcccccccchhhhhhccccccccccCccccccccccccc-ceeeeeeeeeeeHHHHHHHHHHHHhhhcccccCcchh
Confidence 0 00000000 0000000012345 8999999999999999999999999999998876544
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCcCcchhHHHHHHHHHHHHHhcCCCCccccchhhHHHHHHH
Q 005350 471 QESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLL 550 (701)
Q Consensus 471 ~~~~~~~~~~~i~~~f~~iF~~E~ilKi~a~G~~~y~~~~wn~fD~ivv~~s~i~~i~~~~~~~~~~~~~~~~~l~~lr~ 550 (701)
+.......+.+.|.+|+.+|++|+++|++++|+.-|+++.||+.|+++++++++..+.... ....++.+|.
T Consensus 866 ~~~~~~~~L~y~D~~Ft~iFt~Em~lK~ia~Gf~~y~rn~w~~lDf~Vv~vslisl~~~~~---------~~~~ik~lr~ 936 (1592)
T KOG2301|consen 866 NRPTINGILEYADYIFTYIFTFEMLLKWIAYGFFFYFRNAWNWLDFVVVIVSLISLIASLK---------ILSLIKSLRI 936 (1592)
T ss_pred hchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHhhhhHHHhhhHHHHHHHhhh---------hhhHHHHHHH
Confidence 4545667889999999999999999999999998899999999999999999998876543 2346899999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCc-----------cc
Q 005350 551 ARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETD-----------LA 619 (701)
Q Consensus 551 ~RvlRllrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~-----------~~ 619 (701)
+|++|+||.+++++++|.++..++.++|++++++.+.++++++||++|+|+|+|+.+.||+.-.++. .+
T Consensus 937 lRaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~ 1016 (1592)
T KOG2301|consen 937 LRALRPLRALSRFPGMRVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECE 1016 (1592)
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchh
Confidence 9999999999999999999999999999999999999999999999999999999999987543311 10
Q ss_pred cc-----cc---cccCCCCHHHHHHHHHHHHhccChHHHHHHhhhhcCCCCCccccccCCCCcceeeehhhhhhccceee
Q 005350 620 DD-----DY---LLFNFNDYPNGMVTLFNLLVMGNWQVWMQLQRVDRNCLDSSIFRQLLPNNCFTTIEFGHSFCLGGILC 691 (701)
Q Consensus 620 ~~-----~y---~~~nF~~f~~al~tLf~i~t~e~W~~im~~~~~~~~c~~~~~~~~~~~~~cg~~~~y~~~~~~~~~~~ 691 (701)
.. .+ +++|||++++|+++||+++|.|||.++|+..++.++-+.+|.+ ++.=+-.++|..|+.+|.++.
T Consensus 1017 ~~~~~~~~~w~n~~~nfDnv~~a~laLf~v~tf~GW~~i~~~~ids~~~~~~p~~----~~~~~~~~ffvifii~~~ff~ 1092 (1592)
T KOG2301|consen 1017 SLPRAPRRWWNNRKFNFDNVGNAMLALFQVATFKGWPDIMYAAIDSRGVNAQPIL----ESNLYMYLFFVIFIIIGSFFT 1092 (1592)
T ss_pred hhhhccceEEeccccccccHHHHHHHHHHHHhcCCHHHHHHHHhhhhccCcCCcc----cccccceeehhhhhhHHhhhh
Confidence 00 11 4699999999999999999999999999999999998888876 455566677777777766655
Q ss_pred ecc
Q 005350 692 RNG 694 (701)
Q Consensus 692 ~~~ 694 (701)
-|.
T Consensus 1093 lnl 1095 (1592)
T KOG2301|consen 1093 LNL 1095 (1592)
T ss_pred eee
Confidence 443
No 4
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-48 Score=421.21 Aligned_cols=518 Identities=19% Similarity=0.262 Sum_probs=375.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhcccccceehhhHHHHHHHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhccHH
Q 005350 137 VYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQ 216 (701)
Q Consensus 137 ~~e~v~~~if~~E~~lk~~~~g~~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~~R~lR~lrli~~~~~ 216 (701)
+-+.+++-.|..|+.+|..+.|+-.|.|||.|++|.++++++.-+++.. ......++|-||.+|+++|.++++.
T Consensus 655 i~n~vftsmfalEm~lkla~~g~f~y~rnPynifdgiiv~is~wEiVgq------q~GglsvlrtFrllrvlkLvrf~pa 728 (1956)
T KOG2302|consen 655 IDNNVFTSMFALEMDLKLAARGFFRYHRNPYNIFDGIIVAISHWEIVGQ------QDGGLSVLRTFRLLRVLKLVRFSPA 728 (1956)
T ss_pred hhhhhhHHHHHHHHHHhhhhccchhccCCCcccCCCeEEEEEeeEeecc------cCCCcCCCcHHHHHHHHHHHhhhHH
Confidence 4468899999999999999999988999999999999999887766333 2224578999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------ccccccccccHHHHHHHHHHHHhcCCCchhh
Q 005350 217 LRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED----------TVQGNMVFTSFGTTLYQMFVLFTTSNNPDVW 286 (701)
Q Consensus 217 lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~----------~~~~~~~F~~~~~s~~~lf~l~T~~~w~dv~ 286 (701)
+|+-...+.++.....-...++++++++|||+||.+||. +..+..+||++..+..|.|++.|.++|+.+.
T Consensus 729 lqrqlvvl~ktmdnvAtfctllmLfififsIlgmh~fGckfs~e~dtGdt~pDrknfdsllwaivTvfqilTqedwn~vL 808 (1956)
T KOG2302|consen 729 LQRQLVVLMKTMDNVATFCTLLMLFIFIFSILGMHSFGCKFSLETDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVL 808 (1956)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHhhhhhhhhccccccccccCCcCCCccccchHHHHHHHHHhhhcccccchhh
Confidence 999999999998888888899999999999999999983 2345688999999999999999999999998
Q ss_pred Hhhh-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHH-HHHHHHHHHhhccccC--------
Q 005350 287 IPAY-KASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEM--DRMR-RRTLGKAFNLIDNYNV-------- 354 (701)
Q Consensus 287 ~p~~-~~~~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~~~~~~~~~~--~~~r-~~~l~~af~~L~~~~~-------- 354 (701)
+..+ ..+.|+++||+..+-.|+|++.||.+|+..|.|+.+........ ++.+ .+..++.|..+.+..+
T Consensus 809 yngmastSswa~lyfvAlmtfGnYvlfnllvailvEgFqaee~s~rs~~qhDe~q~~~~~~e~fdkl~e~ld~d~k~cp~ 888 (1956)
T KOG2302|consen 809 YNGMASTSSWAPLYFVALMTFGNYVLFNLLVAILVEGFQAEEDSNRSGLQHDEDQHSQNPEEGFDKLQEGLDSDPKLCPH 888 (1956)
T ss_pred hcCccccCCcchhHHHHhhhccceeeeccchhhhhhhcccccccccccccccccccccCccccchhhcccccCccccCcc
Confidence 8776 57889999999999999999999999999999975322111000 0000 0000111111111000
Q ss_pred -----CCC------------------------C----------------------HHH-------------------H--
Q 005350 355 -----GFL------------------------N----------------------KEQ-------------------C-- 362 (701)
Q Consensus 355 -----~~l------------------------~----------------------~~q-------------------~-- 362 (701)
+.. + .+| +
T Consensus 889 ~~t~~~H~~~r~sl~~hl~~~~aasP~~~~t~sp~~~~~~~~sR~~S~~~s~~~~~d~~~~pS~rss~~~Pw~~s~awts 968 (1956)
T KOG2302|consen 889 HHTPNGHLRSRLSLGHHLAHQHAASPHPGETISPDSSVGSYQSRGISDYSSEYHSYDQDSHPSERSSGDHPWGTSYAWTS 968 (1956)
T ss_pred ccCCCCCcccccCCCCccccccCCCCCCCCCcCCCcccccccccccccccCCCccccCCCCchhccCCCCCCccchhhhh
Confidence 000 0 000 0
Q ss_pred --HHHHHHhhhc---------cC-------------------CCCCChHHHHHHhhhhc------------------ccC
Q 005350 363 --IKLFEELNKY---------RT-------------------LPNISREEFELIFDELD------------------DTH 394 (701)
Q Consensus 363 --~~~~~~l~~~---------~~-------------------~~~~~~~~~~~l~~~~d------------------~~~ 394 (701)
...-+.+++. .+ .|.-.....+..+. +| ++.
T Consensus 969 Rrss~~qslkh~~~~ge~~SlLsgeygq~ts~~~~~~~~~raAPGpraa~~r~~~s-~~~ahPr~~~~aa~Rsas~~rdc 1047 (1956)
T KOG2302|consen 969 RRSSWNQSLKHQDPSGEYESLLSGEYGQSTSQLSAPHGSRRAAPGPRAASRRRVFS-LDVAHPRGSAHAAGRSASTHRDC 1047 (1956)
T ss_pred cccchhhhcccCCCcchhhhhhccccccccccccCCCCCccCCCCCcccccccccc-ccccCCCcccccccCCCcccccc
Confidence 0000000000 00 00000000000000 00 000
Q ss_pred Ccc----------------cchhhh-----hhhHHHHHhhhcccCCccc------cccCCcccccHHHHHHHhcccchhH
Q 005350 395 DFK----------------INLDEF-----ADLCNAIALRFQKEDVPSC------FENLPSIYHSPFSEKLKAFIRSTKF 447 (701)
Q Consensus 395 ~~~----------------i~~~ef-----~~~~~~i~~~~~k~~~~~~------~~~~p~~~~s~~r~~~~~iv~~~~f 447 (701)
+|+ .|.++- .+.|....+... ...|.| ++++--..++++|..|++++.|+.|
T Consensus 1048 ngrv~s~~k~v~t~~~s~r~d~d~~~eEg~~~k~~r~r~~i~-~~kp~~c~~r~~Ws~ylF~pQ~rFR~lc~~ii~hk~F 1126 (1956)
T KOG2302|consen 1048 NGRVTSMSKDVFTQDISTRHDEDEGKEEGQFQKCKRVRKQIT-RYKPHWCNLRELWSKYLFSPQNRFRVLCQNIIQHKAF 1126 (1956)
T ss_pred CCccchhhhhhhccCCCCccccccchhcchhHHHHhhhhhhc-ccCCcchhHHHHHHHHhcCcccHHHHHHHHHHHHhhh
Confidence 111 111111 112222222111 111121 1122222368899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhh-HHHHHHHHHHHHHHHHHHHHHhhcCc----ccccccCcCcchhHHHHHH
Q 005350 448 GYMISIILIVNLVAVIVETTLDIQESSLQS-VWQEVEFVFGWIYVLEMALKIYSYGF----ENYWRDGQNRFDFLVTWVI 522 (701)
Q Consensus 448 ~~~i~~~Illn~i~l~~~~~~~~~~~~~~~-~~~~i~~~f~~iF~~E~ilKi~a~G~----~~y~~~~wn~fD~ivv~~s 522 (701)
+.++.++|++|+|.+++|++...+. ..+. .+..-+++|+.+|++|+.+|++|+|+ .+|+++.||.+|++++.++
T Consensus 1127 d~vVl~~IfLNcVtialerp~i~~~-s~EriFltlsnyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vs 1205 (1956)
T KOG2302|consen 1127 DTVVLFFIFLNCVTIALERPAIVEG-STERIFLTLSNYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVS 1205 (1956)
T ss_pred hheehhhhhhhhHHHHhcccccccC-cceEEEEEecchHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999998743333 2333 33455699999999999999999996 7999999999999999999
Q ss_pred HHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 005350 523 VIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIF 602 (701)
Q Consensus 523 ~i~~i~~~~~~~~~~~~~~~~~l~~lr~~RvlRllrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~ifAiiG~~lF 602 (701)
+++.++......+.. -..++|++|++|.+|+||.+.+.++++.++.|+..|++.+++++.+...++++|+++|+|||
T Consensus 1206 viDilvs~asa~g~k---ILgVlrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLF 1282 (1956)
T KOG2302|consen 1206 VIDILVSQASAGGAK---ILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLF 1282 (1956)
T ss_pred HHHHHHHHhhhhhHH---HHHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888766544322 34678999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCC-----CCcccccccc----ccCCCCHHHHHHHHHHHHhccChHHHHHHhhhhcCCCCCccc
Q 005350 603 GGIVNAGNAKLE-----ETDLADDDYL----LFNFNDYPNGMVTLFNLLVMGNWQVWMQLQRVDRNCLDSSIF 666 (701)
Q Consensus 603 ~g~~~~~n~~~~-----~~~~~~~~y~----~~nF~~f~~al~tLf~i~t~e~W~~im~~~~~~~~c~~~~~~ 666 (701)
.|+.+.|..... .+++....|. +.||+|.++|+++||.+.+-+||..||++-.++-+.+.+|+-
T Consensus 1283 kgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~ 1355 (1956)
T KOG2302|consen 1283 KGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPIL 1355 (1956)
T ss_pred cccceeccccccccccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccchhhhhccchhhceeeeeccc
Confidence 999998854322 2334344453 699999999999999999999999999999888888888863
No 5
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.93 E-value=7.7e-25 Score=232.00 Aligned_cols=201 Identities=15% Similarity=0.162 Sum_probs=168.4
Q ss_pred ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhc-CchhhhcccccceehhhHHHHHHHHHHHhhhc------CCCCccc
Q 005350 124 LGQLPYLTGWESLVYEGITLVILIIHTFFPITYE-GSPIFWKSTYTRLKVLCLLILVADFLVYGLYL------SPIAFNF 196 (701)
Q Consensus 124 ~~~~~~~~~~~~~~~e~v~~~if~~E~~lk~~~~-g~~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~------~~~~~~~ 196 (701)
..+.|.+. .+|.+|+++|++|+++|.... .+.+|+|++.|++|++.++..++++.+..... ...+...
T Consensus 236 ~~~~p~l~-----~vE~vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vv 310 (477)
T KOG3713|consen 236 SEPHPILT-----YVETVCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVV 310 (477)
T ss_pred CCCCCchH-----HHHHHHHHHHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhH
Confidence 34555553 469999999999999998864 46679999999999999999999988775432 1122346
Q ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHH
Q 005350 197 LPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVL 276 (701)
Q Consensus 197 ~~lr~~R~lR~lrli~~~~~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~l 276 (701)
+++|++|++|++||.+++.+||.+..|+++|.++++-+++++..-+.+||- +..|.+..++.++|+|||.++||.-+.
T Consensus 311 rvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFSt--lvY~~Ek~~~~~~FtSIPa~~WWaiVT 388 (477)
T KOG3713|consen 311 RVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFST--LVYFAEKDEPDTKFTSIPAGFWWAVVT 388 (477)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhcCCCCCCccccchhheeeEE
Confidence 788999999999999999999999999999999999999999999999994 455555555677799999999999999
Q ss_pred HhcCCCchhhHhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005350 277 FTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDR 336 (701)
Q Consensus 277 ~T~~~w~dv~~p~~~~~~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~~~~~~~~~~~~ 336 (701)
|||.||+| |+|....++.. .+-.++++.+++.|+|.+|++||.+.+.+++++++.
T Consensus 389 MTTVGYGD-m~P~T~~Gklv----as~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~ 443 (477)
T KOG3713|consen 389 MTTVGYGD-MVPVTVLGKLV----ASLCILCGVLVLALPITIIVNNFSMYYSELKAREKA 443 (477)
T ss_pred EeeecccC-ccccccchHHH----HHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHh
Confidence 99999999 89999888854 456677888899999999999999988876555443
No 6
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.88 E-value=2.9e-22 Score=229.97 Aligned_cols=274 Identities=12% Similarity=0.079 Sum_probs=192.6
Q ss_pred cCCChHHHHHHhHHHHhcCCCCch-hhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccCCCCcCcCC
Q 005350 39 TRGSPYQKAAALVDLAEDGIGLPE-EILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLEKPLWCAKTGVGTYSCY 117 (701)
Q Consensus 39 ~~~~~~~~a~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ll~l~~~e~p~~~~~~~~~~~~~~ 117 (701)
+-+...+-|++.+++.++|.|+++ .|. ...--+.+||.. +++|..+.+ .+|.|..+...+ .....+
T Consensus 1095 DL~lSa~eA~~~L~~LKdnlWIDr~~TR------AVFVEFTVYNAN-----VNLFSvVtL-LfEF~~TGGV~~-s~~IqT 1161 (1634)
T PLN03223 1095 DINLSAAEAQTWLDYMIYGLMIDDVKTR------KVTAQVVVYNAE-----LGYFGNVMV-FFEFTDGGKIEV-THRLNT 1161 (1634)
T ss_pred ECCCCHHHHHHHHHHHHhCCCcccccce------eEEEEEEEEcCC-----CCeEEEEEE-EEEEcCCCceee-eeeEEE
Confidence 345567889999999999999998 444 222333344433 122332222 289998776553 222223
Q ss_pred CcccccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcC-----chhhhcccccceehhhHHHHHHHHHHHhhhc---
Q 005350 118 DREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEG-----SPIFWKSTYTRLKVLCLLILVADFLVYGLYL--- 189 (701)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~e~v~~~if~~E~~lk~~~~g-----~~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~--- 189 (701)
-+.+.|.+...|+... +.++=++++++++++.+.++...+ .++||+++||++|++++++++..++++....
T Consensus 1162 fRL~~Y~tt~DyfvLa-cEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~ 1240 (1634)
T PLN03223 1162 IRVELYETYEDWVRFA-MEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSY 1240 (1634)
T ss_pred EEEEEecccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3433333333443221 223334455556777777776543 4679999999999999999998887643210
Q ss_pred ----------------C----------CCC-------cc-c--------------hhhHHHHHHHHHHHHhccHHHHHHH
Q 005350 190 ----------------S----------PIA-------FN-F--------------LPLRIAPYIRVVFFILNIRQLRDTL 221 (701)
Q Consensus 190 ----------------~----------~~~-------~~-~--------------~~lr~~R~lR~lrli~~~~~lr~~~ 221 (701)
. +.. +. + ..+-+++++|++|+++.+|.++.+.
T Consensus 1241 astf~~dIrynIYK~ls~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt 1320 (1634)
T PLN03223 1241 ARAFEPDIHYDIYKNLSASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVIT 1320 (1634)
T ss_pred hhhhcchhhhhhhhhhhhhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHH
Confidence 0 000 00 0 0123467899999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHhcCCCc--hhhHhh-hccCcchHH
Q 005350 222 FVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNP--DVWIPA-YKASRWYCL 298 (701)
Q Consensus 222 ~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~l~T~~~w~--dv~~p~-~~~~~~~~i 298 (701)
.+|.+++|+++.++++++++++.||++|+.+||... ..|.|++.|+.+||++++++.+. +.+.+. .....++++
T Consensus 1321 ~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~v---e~FSTf~sSL~TLFqMLLGDfdYF~eDLk~l~e~nrVLGPI 1397 (1634)
T PLN03223 1321 RTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNAS---VHFSDMTDSINSLFENLLGDITYFNEDLKNLTGLQFVVGMI 1397 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---hhhcCHHHHHHHHHHHHHcCchHHHHHHHhhhcccchHHHH
Confidence 999999999999999999999999999999999863 57999999999999999975431 112222 234566899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005350 299 FFVLYVLIGVYFVTNLILAVVYDSFKSQLAK 329 (701)
Q Consensus 299 fFi~~~~l~~~~~lnLfiaVi~~~f~~~~~~ 329 (701)
||++|+++..|+++|||+|||.++|++.+++
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFsEVK~d 1428 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFGEVKAN 1428 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999987665
No 7
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.85 E-value=5.7e-21 Score=188.63 Aligned_cols=182 Identities=21% Similarity=0.338 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc--hhhhcccccceehhhHHHHHHHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhccH
Q 005350 138 YEGITLVILIIHTFFPITYEGS--PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIR 215 (701)
Q Consensus 138 ~e~v~~~if~~E~~lk~~~~g~--~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~~R~lR~lrli~~~~ 215 (701)
+|.+|.++|++|+++|+++.|. ++|++++||++|++++++.+++.+.............+..|++|.+|++|+++..+
T Consensus 2 ~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~~ 81 (200)
T PF00520_consen 2 LEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRFR 81 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccccccccceEEEEEeeccccccccccccc
Confidence 6999999999999999999997 78999999999999999987776554321100011346889999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------------ccccccccHHHHHHHHHHHHhcCC
Q 005350 216 QLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTV--------------QGNMVFTSFGTTLYQMFVLFTTSN 281 (701)
Q Consensus 216 ~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~~~--------------~~~~~F~~~~~s~~~lf~l~T~~~ 281 (701)
.++....++.++.+++..++++++++++.||+.|+++|++.. .+..+|++++.|++++++++|++|
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~ 161 (200)
T PF00520_consen 82 SLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGEG 161 (200)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTTT
T ss_pred cccccccccccccccccccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccCC
Confidence 999999999999999999999999999999999999999753 235679999999999999999999
Q ss_pred CchhhHhhh-ccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 005350 282 NPDVWIPAY-KASRWYCLFFVLYVLIGVYFVTNLILAVV 319 (701)
Q Consensus 282 w~dv~~p~~-~~~~~~~ifFi~~~~l~~~~~lnLfiaVi 319 (701)
|+|++.+.+ ..+....+|+++++++++++++|+++|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 162 WGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp CCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 999887665 56667788999999999999999999986
No 8
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.84 E-value=5.4e-22 Score=199.82 Aligned_cols=188 Identities=11% Similarity=0.104 Sum_probs=161.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCch-hhhcccccceehhhHHHHHHHHHHHhhhcCCCC------c---cchhhHHHH
Q 005350 134 ESLVYEGITLVILIIHTFFPITYEGSP-IFWKSTYTRLKVLCLLILVADFLVYGLYLSPIA------F---NFLPLRIAP 203 (701)
Q Consensus 134 ~~~~~e~v~~~if~~E~~lk~~~~g~~-~y~~~~wn~~D~~iiv~~~i~~i~~~~~~~~~~------~---~~~~lr~~R 203 (701)
.++++|..|++||++|.++|..+++.+ .|+||..|++|++.++..++.+..-......++ - ..+++|..|
T Consensus 254 PFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVR 333 (507)
T KOG1545|consen 254 PFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVR 333 (507)
T ss_pred chHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHH
Confidence 356789999999999999999998765 499999999999999999999887766432111 1 135677777
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHhcCCCc
Q 005350 204 YIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNP 283 (701)
Q Consensus 204 ~lR~lrli~~~~~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~l~T~~~w~ 283 (701)
++|++||-+++++++.+.++++.|+.+++-+++++++-+++|| ....|.+.+++.++|+++++|+|+..+.|||.||+
T Consensus 334 VFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFs--SavYFAEade~~S~F~SIPdaFWwavVTMTTVGYG 411 (507)
T KOG1545|consen 334 VFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFS--SAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYG 411 (507)
T ss_pred HhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ceeeeeecCCCccCCCcCcccceEEEEEEEeeccc
Confidence 7888888889999999999999999999999999999999998 77789988888999999999999999999999999
Q ss_pred hhhHhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005350 284 DVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLA 328 (701)
Q Consensus 284 dv~~p~~~~~~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~~~~ 328 (701)
| |.|....++.. .+.+-+.+.+-+.|++.||+.||.-.+.
T Consensus 412 D-m~P~TvgGKIV----GslCAiaGVLTiALPVPVIVsNFnyFYh 451 (507)
T KOG1545|consen 412 D-MVPVTVGGKIV----GSLCAIAGVLTIALPVPVIVSNFNYFYH 451 (507)
T ss_pred c-ceecccCceeh----hhHHhhhhheEecccccEEEecccceee
Confidence 9 89999888863 4567778888999999999999986544
No 9
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1e-20 Score=192.02 Aligned_cols=186 Identities=15% Similarity=0.188 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-chhhhcccccceehhhHHHHHHHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhc
Q 005350 135 SLVYEGITLVILIIHTFFPITYEG-SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILN 213 (701)
Q Consensus 135 ~~~~e~v~~~if~~E~~lk~~~~g-~~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~~R~lR~lrli~~ 213 (701)
++++|..|+++|+.|.++|..+.+ .-+|.|+...++|++.+...++.+++... .+.+...-.+|++|++|+++.-++
T Consensus 229 FFclDTACVmIFT~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N--~DVSGaFVTLRVFRVFRIFKFSRH 306 (632)
T KOG4390|consen 229 FFCLDTACVMIFTGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDN--EDVSGAFVTLRVFRVFRIFKFSRH 306 (632)
T ss_pred eEEecceeEEEeeHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCC--ccccceeEEEEeeeeeeeeeeccc
Confidence 355799999999999999998755 55699999999999999999988765532 222333567999999999999999
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHhcCCCchhhHhhhccC
Q 005350 214 IRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKAS 293 (701)
Q Consensus 214 ~~~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~l~T~~~w~dv~~p~~~~~ 293 (701)
++++|.+..+|+.|..+++-+++-+...+++|| .+.++.++....+.|++++.++|--.+.+||-||+| |.|....+
T Consensus 307 SQGLRILGYTLKSCASELGFLlFSLtMAIIIFA--TvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGD-MVp~TIaG 383 (632)
T KOG4390|consen 307 SQGLRILGYTLKSCASELGFLLFSLTMAIIIFA--TVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGD-MVPSTIAG 383 (632)
T ss_pred ccccchhhhhHHHHHHHHhHHHHHHHHHHHHHH--HHHHhhhccccccccccCcHhHhhheeeeeeccccc-cchHHHHH
Confidence 999999999999999999999999999999999 556666665577899999999999999999999999 78887776
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005350 294 RWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAK 329 (701)
Q Consensus 294 ~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~~~~~ 329 (701)
+ -|...+-+.+.+++.|++.||+.||+..+.+
T Consensus 384 K----IfGsiCSLSGVLVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 384 K----IFGSICSLSGVLVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred H----HhhhhhcccceEEEeccccEEEechhHHHhh
Confidence 6 3677888889999999999999999987754
No 10
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.74 E-value=2.9e-18 Score=169.21 Aligned_cols=193 Identities=25% Similarity=0.419 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCc--ccccccCcCcchhHHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHHH
Q 005350 481 EVEFVFGWIYVLEMALKIYSYGF--ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIR 558 (701)
Q Consensus 481 ~i~~~f~~iF~~E~ilKi~a~G~--~~y~~~~wn~fD~ivv~~s~i~~i~~~~~~~~~~~~~~~~~l~~lr~~RvlRllr 558 (701)
++|.++.++|++|.++|+++.|+ ++|++++||++|+++++...+..+........ .....+..+++|.+|++|
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~R~l~ 75 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSAS-----AQSLLRIFRLLRLLRLLR 75 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--H-----HCHCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhccccccccccccccccccccccc-----ccceEEEEEeeccccccc
Confidence 57899999999999999999998 89999999999999888765544332211100 013578899999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCccccccccccCCCCHHHHHHHH
Q 005350 559 LLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTL 638 (701)
Q Consensus 559 li~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~al~tL 638 (701)
+++..+.++.+..++.++.+.+..++.+++++++.||++|+++|++....++.... .......+..+|++++.|+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~--~~~~~~~~~~~f~~~~~s~~~~ 153 (200)
T PF00520_consen 76 LLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTW--DSENDIYGYENFDSFGESLYWL 153 (200)
T ss_dssp HHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------S--S----SSTHHHHSSHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhheeccccccccccccc--cccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999998865432111 1111223468999999999999
Q ss_pred HHHHhccChHHHHHHhhhhcCCCCCccccccCCCCcceeeehhhhhhccceeeecc
Q 005350 639 FNLLVMGNWQVWMQLQRVDRNCLDSSIFRQLLPNNCFTTIEFGHSFCLGGILCRNG 694 (701)
Q Consensus 639 f~i~t~e~W~~im~~~~~~~~c~~~~~~~~~~~~~cg~~~~y~~~~~~~~~~~~~~ 694 (701)
++++|+|||+++|...+ |..+. ...+++..|+.+|+++.-|.
T Consensus 154 ~~~~t~~~~~~~~~~~~----~~~~~----------~~~~~~~~~~~i~~~~l~nl 195 (200)
T PF00520_consen 154 FQTMTGEGWGDVMPSCM----SARSW----------LAVIFFISFIIIVSILLLNL 195 (200)
T ss_dssp HHHHTTTTCCCCHHHHH----HTTST----------THHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccccccccc----cccch----------hHhHHhhhhhhhHHHHHHHH
Confidence 99999999999999877 11111 12345556777777766553
No 11
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.68 E-value=9.7e-17 Score=178.06 Aligned_cols=266 Identities=18% Similarity=0.269 Sum_probs=191.4
Q ss_pred cCCChHHHHHHhHHHHhcCCCCchhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccCCCCcCcCCC
Q 005350 39 TRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLEKPLWCAKTGVGTYSCYD 118 (701)
Q Consensus 39 ~~~~~~~~a~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ll~l~~~e~p~~~~~~~~~~~~~~~ 118 (701)
+=+++.+.|.+.+++.++++|+++.|. ...--+..||...- .|..+ --.+|.|+.+...+ ..+..+-
T Consensus 131 ~L~~~~~~a~~~l~~L~~~~WiD~~Tr------av~vef~~YN~~~n-----lf~~v-~l~~E~~~~G~~~~-s~~i~~~ 197 (425)
T PF08016_consen 131 DLGRNKDEARSILQYLQQNNWIDRSTR------AVFVEFTLYNPNTN-----LFSVV-TLLFEFPPTGGVIP-SASIQTF 197 (425)
T ss_pred ECCCCHHHHHHHHHHHHhCcCcccCCc------eEEEEEEEEcCCCC-----eeEEE-EEEEEEcCCCceee-ecceeEE
Confidence 445678889999999999999988776 33444445554322 22211 22389999876653 3333334
Q ss_pred cccccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCchhhhcccccceehhhHHHHHHHHHHHhhhc---------
Q 005350 119 REYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL--------- 189 (701)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~e~v~~~if~~E~~lk~~~~g~~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~--------- 189 (701)
+.+.+.+...+.... +.++=++++++|+...+.|+...| ++|++++||++|++++++++..++......
T Consensus 198 ~l~~~~~~~~~~~~~-~~i~f~~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~ 275 (425)
T PF08016_consen 198 RLYRYDGTFDYFVLL-CEILFVLFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQ 275 (425)
T ss_pred EeeeecCcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444443221 223344566677788888888888 679999999999999999888776554311
Q ss_pred ---CCCCc-cch--------------hhHHHHHHHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005350 190 ---SPIAF-NFL--------------PLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYV 251 (701)
Q Consensus 190 ---~~~~~-~~~--------------~lr~~R~lR~lrli~~~~~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~ 251 (701)
++..+ +.. .+-.+-.+|.+|+++..+.++.+.+++.++.+++...+++++++++.||..|+.
T Consensus 276 ~~~~~~~fv~f~~~a~~~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l 355 (425)
T PF08016_consen 276 YRENPRSFVDFQELAQWDQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYL 355 (425)
T ss_pred hhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000 122356788999999999999999999999999999999999999999999999
Q ss_pred HhccccccccccccHHHHHHHHHHHHhcCCCchhhHhhh-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005350 252 IFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAY-KASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKS 325 (701)
Q Consensus 252 lF~~~~~~~~~F~~~~~s~~~lf~l~T~~~w~dv~~p~~-~~~~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~ 325 (701)
+||.. ...|+|+..|+.+++.++.++. |. .... .+...+.+||++|+++..++++|+++|++.++|++
T Consensus 356 ~fG~~---~~~f~s~~~s~~tl~~~l~g~~--~~-~~~~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 356 LFGSY---SEDFSSFSSSLVTLFRMLLGDF--DY-DELYQANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred hhcCC---ccccCCHHHHHHHHHHHhcCCC--ch-hhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99975 3569999999999999887632 21 1222 34455688999999999999999999999999975
No 12
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.64 E-value=3.2e-15 Score=172.73 Aligned_cols=301 Identities=13% Similarity=0.093 Sum_probs=210.7
Q ss_pred cccCCCCCCCCCccccCCCccccccccccccCCChHHHHHHhHHHHhcCCCCchhhhccCChhhHHHHHHHHHHHHHHHH
Q 005350 9 GEASGNNRNNDNNRRRRGPTALFRRRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWS 88 (701)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 88 (701)
|......+..++....-|.-..|+--+=..+-......+...++..+.++|+++.+. ....-+..||....
T Consensus 356 e~~~~~~~~~L~~~~~~g~l~~Y~~gGY~~~l~~sr~es~~~i~~L~~~~WlD~~Tr------AvfidftlYNa~in--- 426 (798)
T KOG3599|consen 356 EFTYSTSKELLLGLEHWGLLASYGGGGYVVLLSLSRTESLKAISYLRENNWLDRGTR------AVFIDFTLYNADIN--- 426 (798)
T ss_pred ccccccccccccccccccceeEecCCCEEEEecCchHhHHHHHHHHHHhccccCCCc------EEEEeccccCCCCC---
Confidence 334444445577778888888884222222333447788999999999999988777 44455666765432
Q ss_pred HHHHHHHHHhhcccCcccccCCCCcCcCCCcccccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCchhhhccccc
Q 005350 89 LNYFALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYT 168 (701)
Q Consensus 89 ~~~~~ll~l~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~~if~~E~~lk~~~~g~~~y~~~~wn 168 (701)
+|..+-|- +|.|+.+...++ .+..+-....+....+++.. -..++=+++.++|+++.+.++.-.+.+.|++++||
T Consensus 427 --lF~~v~L~-vE~p~~G~~~ps-~~l~S~~L~~~~~~~~~~~~-l~~vvf~l~~~yf~~~e~~~i~~~~~~~y~~s~wN 501 (798)
T KOG3599|consen 427 --LFCVVTLR-VEFPPTGGVLPS-LQLESFKLLRYVSAGSSLIM-LCEVVFLLFVLYFAVAEGLKIWIHRLGRYVRSKWN 501 (798)
T ss_pred --eeEEEEEE-EEecCccccccc-ceEEEEehhhhhccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHH
Confidence 22222222 899988766642 22222222222233333221 12333445556777888888876777779999999
Q ss_pred ceehhhHHHHHHHHHHHhhhcCCC-------------Cc-c----------ch----hhHHHHHHHHHHHHhccHHHHHH
Q 005350 169 RLKVLCLLILVADFLVYGLYLSPI-------------AF-N----------FL----PLRIAPYIRVVFFILNIRQLRDT 220 (701)
Q Consensus 169 ~~D~~iiv~~~i~~i~~~~~~~~~-------------~~-~----------~~----~lr~~R~lR~lrli~~~~~lr~~ 220 (701)
++|++++.++++.+++........ .+ + .+ .+-.+-.+|.+|+++.++.++.+
T Consensus 502 ~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~ 581 (798)
T KOG3599|consen 502 WLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQWNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQF 581 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 999999999998877665432110 00 0 00 12235567888999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHhcCCCchhhHh-hhccCc-chHH
Q 005350 221 LFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIP-AYKASR-WYCL 298 (701)
Q Consensus 221 ~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~l~T~~~w~dv~~p-~~~~~~-~~~i 298 (701)
-+||.+++|+++.+++.++++++.||++|+.+||... .+|.|+.+|+.+++-..-+ |+-.. ....++ ...+
T Consensus 582 s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v---~~f~~f~~s~~t~~~~~~G----~~~~~~i~~~~r~LG~~ 654 (798)
T KOG3599|consen 582 SSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV---SDFRTFVASIVTLLRYILG----DFCPAEIFHANRILGPL 654 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---CChHHHHHHHHHHHHHHhc----cCCccccccCCchHHHH
Confidence 9999999999999999999999999999999999964 5699999999999988776 33221 234554 4578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005350 299 FFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 330 (701)
Q Consensus 299 fFi~~~~l~~~~~lnLfiaVi~~~f~~~~~~~ 330 (701)
||.+|++++.++++|||+|+|++.|.+.+...
T Consensus 655 ~~~~~v~~v~~illnmF~aiI~~~~~evk~~~ 686 (798)
T KOG3599|consen 655 LFLTYVFVVSFILLNLFVAIINDTYGEVKADL 686 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHH
Confidence 99999999999999999999999999877654
No 13
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.54 E-value=1.5e-13 Score=146.56 Aligned_cols=164 Identities=19% Similarity=0.222 Sum_probs=128.3
Q ss_pred cHHHHHHHhcccchh-------HHHHHHHHHHHHHHHHHHhhccccccch----------------hhhHHHHHHHHHHH
Q 005350 432 SPFSEKLKAFIRSTK-------FGYMISIILIVNLVAVIVETTLDIQESS----------------LQSVWQEVEFVFGW 488 (701)
Q Consensus 432 s~~r~~~~~iv~~~~-------f~~~i~~~Illn~i~l~~~~~~~~~~~~----------------~~~~~~~i~~~f~~ 488 (701)
.++|++++++++.|. |.....+.++++++.+++.+.++-+... .++.+.++|.++.+
T Consensus 172 ~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~ 251 (477)
T KOG3713|consen 172 GRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIA 251 (477)
T ss_pred hhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHH
Confidence 347899999998764 7778888999999999998875443222 23468999999999
Q ss_pred HHHHHHHHHHhhcC-cccccccCcCcchhHHHHHHHHHHHHHhcCCCCcccc-chhhHHHHHHHHHHHHHHHHhhhhhhH
Q 005350 489 IYVLEMALKIYSYG-FENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFL-SNGEWIRYLLLARMLRLIRLLMHVQQY 566 (701)
Q Consensus 489 iF~~E~ilKi~a~G-~~~y~~~~wn~fD~ivv~~s~i~~i~~~~~~~~~~~~-~~~~~l~~lr~~RvlRllrli~~~~~l 566 (701)
+|++|+++|++... ..+|++++-|++|++.++--.++..+......+.... ..+.++|++|++|++|++||-|++.++
T Consensus 252 WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GL 331 (477)
T KOG3713|consen 252 WFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGL 331 (477)
T ss_pred HHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999884 4689999999999999888777777765543111111 223678999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 005350 567 RGFVATFLTLIPSLMPYLGTIFCVQCIYC 595 (701)
Q Consensus 567 r~l~~tl~~~~~~l~~~~~l~~~~~~ifA 595 (701)
|.+..|+.+|.+.++-++.++.+-+.+||
T Consensus 332 r~lg~Tlr~S~~ElglLllfL~~GI~iFS 360 (477)
T KOG3713|consen 332 RTLGLTLRRSYRELGLLLLFLAVGIVIFS 360 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998655554444444444
No 14
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.38 E-value=4.7e-12 Score=128.61 Aligned_cols=173 Identities=16% Similarity=0.242 Sum_probs=132.0
Q ss_pred ccHHHHHHHhcccch-------hHHHHHHHHHHHHHHHHHHhhccccccc------------------------------
Q 005350 431 HSPFSEKLKAFIRST-------KFGYMISIILIVNLVAVIVETTLDIQES------------------------------ 473 (701)
Q Consensus 431 ~s~~r~~~~~iv~~~-------~f~~~i~~~Illn~i~l~~~~~~~~~~~------------------------------ 473 (701)
++..++.+|-+.+.| ....+..++|+++++..|+||-++..++
T Consensus 170 ~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 249 (507)
T KOG1545|consen 170 RNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDLGDT 249 (507)
T ss_pred cchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCccccccccc
Confidence 467788888887743 3556778899999999999976532211
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcCc-ccccccCcCcchhHHHHHHHHHHHHHhcCCCCcc----ccchhhHHHHH
Q 005350 474 SLQSVWQEVEFVFGWIYVLEMALKIYSYGF-ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQT----FLSNGEWIRYL 548 (701)
Q Consensus 474 ~~~~~~~~i~~~f~~iF~~E~ilKi~a~G~-~~y~~~~wn~fD~ivv~~s~i~~i~~~~~~~~~~----~~~~~~~l~~l 548 (701)
...+.+.++|..|.++|++|.++|.++..- ..|+++..|++|++.++--++.+....+...+.+ .-.+..++|++
T Consensus 250 ~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRVi 329 (507)
T KOG1545|consen 250 KFTDPFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVI 329 (507)
T ss_pred ccCCchHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHH
Confidence 011246789999999999999999999964 4788999999999998888877766555432111 11234689999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 005350 549 LLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNA 611 (701)
Q Consensus 549 r~~RvlRllrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~ifAiiG~~lF~g~~~~~n~ 611 (701)
|+.||+|++|+-|+.++++.+.+|+.+|++.+.-++. |-.+|+-||+...|..+.
T Consensus 330 RLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIF--------FlfIgviLFsSavYFAEa 384 (507)
T KOG1545|consen 330 RLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIF--------FLFIGVILFSSAVYFAEA 384 (507)
T ss_pred HHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhceeeeeec
Confidence 9999999999999999999999999999998753333 223799999998876433
No 15
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.29 E-value=2e-11 Score=141.95 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-----cccccccCcCcchhHHHHHHHHHHHHHhcC---------------------
Q 005350 479 WQEVEFVFGWIYVLEMALKIYSYG-----FENYWRDGQNRFDFLVTWVIVIGETITLAS--------------------- 532 (701)
Q Consensus 479 ~~~i~~~f~~iF~~E~ilKi~a~G-----~~~y~~~~wn~fD~ivv~~s~i~~i~~~~~--------------------- 532 (701)
.+++-.+|.++|+.+-+.++...+ +++||++.||++|++++.++++..++.+..
T Consensus 1178 cEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls 1257 (1634)
T PLN03223 1178 MEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLS 1257 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhh
Confidence 456667778888899888887654 479999999999999998888766542110
Q ss_pred ----------CCC----ccccch-------hh----HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhHHHHHHHH
Q 005350 533 ----------PNG----QTFLSN-------GE----WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTI 587 (701)
Q Consensus 533 ----------~~~----~~~~~~-------~~----~l~~lr~~RvlRllrli~~~~~lr~l~~tl~~~~~~l~~~~~l~ 587 (701)
++. ...+.+ .+ +.-++-+++++|++|+++.+++++.+..|+..+.+.++.+++++
T Consensus 1258 ~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF 1337 (1634)
T PLN03223 1258 ASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIF 1337 (1634)
T ss_pred hhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000000 01 11234557889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCCCCCccccccccccCCCCHHHHHHHHHHHHhccChHHHHHHhh
Q 005350 588 FCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQLQR 655 (701)
Q Consensus 588 ~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~al~tLf~i~t~e~W~~im~~~~ 655 (701)
+++++.||++|..+||... .+|.||..|+.|||+++.|+-+ .++++..
T Consensus 1338 ~IVF~AFAqLG~LLFGt~v-------------------e~FSTf~sSL~TLFqMLLGDfd-YF~eDLk 1385 (1634)
T PLN03223 1338 GMVFVGYAFIGHVIFGNAS-------------------VHFSDMTDSINSLFENLLGDIT-YFNEDLK 1385 (1634)
T ss_pred HHHHHHHHHHHHHHhccCc-------------------hhhcCHHHHHHHHHHHHHcCch-HHHHHHH
Confidence 9999999999999999863 3799999999999999998644 3455543
No 16
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.10 E-value=8.8e-09 Score=122.84 Aligned_cols=199 Identities=12% Similarity=0.053 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhhhcccccceehhhHHHHHHHHHHHhhhc-----------CCC---Cc------cchh
Q 005350 139 EGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL-----------SPI---AF------NFLP 198 (701)
Q Consensus 139 e~v~~~if~~E~~lk~~~~g~~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~-----------~~~---~~------~~~~ 198 (701)
.......+.++....++..|...|+++.||++|++.+...+..++...... ... .. -...
T Consensus 395 ~~~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~ 474 (743)
T TIGR00870 395 IVTWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEALFAF 474 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Confidence 344455666777777778888889999999999976655554433221100 000 00 0112
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhcccc----------------cccc
Q 005350 199 LRIAPYIRVVFFILNIRQLRDTLFVLAGMLG-TYLNVLALGLLFLLFSSWLAYVIFEDTV----------------QGNM 261 (701)
Q Consensus 199 lr~~R~lR~lrli~~~~~lr~~~~~l~~~~~-~i~~~~~l~~~~~~~fai~g~~lF~~~~----------------~~~~ 261 (701)
.-++..+|++.+.+.++.+--...++.+++. ++...+++++++++-||+-...+|+... ....
T Consensus 475 ~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (743)
T TIGR00870 475 ALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARSCEKQGN 554 (743)
T ss_pred HHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccc
Confidence 3445667777777777777778888889999 9999999999999999999999986321 1125
Q ss_pred ccccHHHHHHHHHHHHhcCCCchhhHhh-hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005350 262 VFTSFGTTLYQMFVLFTTSNNPDVWIPA-YKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRR 339 (701)
Q Consensus 262 ~F~~~~~s~~~lf~l~T~~~w~dv~~p~-~~~~~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~~~~~~~~~~~~~r~ 339 (701)
.|.++..++.++|..+-+.+ |...+. .....++.++|++|+++..++++||+||++.+.|++..+++.++-+.+|-
T Consensus 555 ~f~~~~~s~~~lf~~~~G~~--~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~wk~~r~ 631 (743)
T TIGR00870 555 AYSTLFETSQELFWAIIGLG--DLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEWKFQRA 631 (743)
T ss_pred cccCHHHHHHHHHHHHcCCc--ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence 69999999999998766543 332111 12345678899999999999999999999999999887765555544443
No 17
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.87 E-value=1.7e-08 Score=108.47 Aligned_cols=181 Identities=17% Similarity=0.172 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----------chhhhcccccceehhhHHHHHHHHHHHhhhcCCCC----ccchhhH
Q 005350 135 SLVYEGITLVILIIHTFFPITYEG----------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIA----FNFLPLR 200 (701)
Q Consensus 135 ~~~~e~v~~~if~~E~~lk~~~~g----------~~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~~~~~----~~~~~lr 200 (701)
.+++|++.+++|.+|+++|+++.| .-+|-+.|..++|+++++.+++-+.+. +.+. ..++.+|
T Consensus 127 L~~LEiv~IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g----~qG~vfatSalrslR 202 (654)
T KOG1419|consen 127 LYILEIVMIVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAG----SQGNVFATSALRSLR 202 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEec----CccceeehhhhhhhH
Confidence 357899999999999999999765 234889999999999888875432221 1111 1245667
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHhccc--cccccccccHHHHHHHHHHHH
Q 005350 201 IAPYIRVVFFILNIRQLRDTLFVLAGM-LGTYLNVLALGLLFLLFSSWLAYVIFEDT--VQGNMVFTSFGTTLYQMFVLF 277 (701)
Q Consensus 201 ~~R~lR~lrli~~~~~lr~~~~~l~~~-~~~i~~~~~l~~~~~~~fai~g~~lF~~~--~~~~~~F~~~~~s~~~lf~l~ 277 (701)
.+++||.+|+=+.- +..+++.++.-. -+++.-..-+-|+.+++-|-+-+..-.+. .++...|+++.+|+|+=-+.+
T Consensus 203 FlQILRmlr~DRrg-gTWKLLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITl 281 (654)
T KOG1419|consen 203 FLQILRMLRMDRRG-GTWKLLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITL 281 (654)
T ss_pred HHHHHHHHHhhccC-chhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeE
Confidence 77777777666554 333444444322 23333333333333333332333333331 224577999999999999999
Q ss_pred hcCCCchhhHhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005350 278 TTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKS 325 (701)
Q Consensus 278 T~~~w~dv~~p~~~~~~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~ 325 (701)
||.||+|. +|..-.++..+-.| -+.++-+..|+-+++-..|.-
T Consensus 282 tTIGYGDk-~P~TWlGr~laa~f----sligiSFFALPAGILGSGfAL 324 (654)
T KOG1419|consen 282 TTIGYGDK-TPQTWLGRLLAACF----SLIGISFFALPAGILGSGFAL 324 (654)
T ss_pred EeeccCCc-CcccchhHHHHHHH----HHHHHHHHhcccccccchhhh
Confidence 99999995 77766666443333 334555778899999988863
No 18
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=98.75 E-value=1.7e-07 Score=104.28 Aligned_cols=146 Identities=18% Similarity=0.318 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccccccCcCcchhHHHHHHHHHHHHHhcC------------CCCccccchh-----
Q 005350 480 QEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS------------PNGQTFLSNG----- 542 (701)
Q Consensus 480 ~~i~~~f~~iF~~E~ilKi~a~G~~~y~~~~wn~fD~ivv~~s~i~~i~~~~~------------~~~~~~~~~~----- 542 (701)
+.+-.++.++|+..-+.|+...| ++|+++.||++|+++++++++..++.... .....+..-.
T Consensus 214 ~i~f~~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~ 292 (425)
T PF08016_consen 214 EILFVLFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQW 292 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHH
Confidence 45566788899999999999999 68999999999999998877655543110 1111111101
Q ss_pred -----hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCc
Q 005350 543 -----EWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETD 617 (701)
Q Consensus 543 -----~~l~~lr~~RvlRllrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~ 617 (701)
...-++-.+-.+|++|+++..+++..+..|+..+.+.+..++.++++++..||.+|.-+||...
T Consensus 293 ~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~----------- 361 (425)
T PF08016_consen 293 DQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYS----------- 361 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----------
Confidence 1223344557789999999999999999999999999999999999999999999999998653
Q ss_pred cccccccccCCCCHHHHHHHHHHHHhcc
Q 005350 618 LADDDYLLFNFNDYPNGMVTLFNLLVMG 645 (701)
Q Consensus 618 ~~~~~y~~~nF~~f~~al~tLf~i~t~e 645 (701)
.+|.|++.|+.++|+++.|+
T Consensus 362 --------~~f~s~~~s~~tl~~~l~g~ 381 (425)
T PF08016_consen 362 --------EDFSSFSSSLVTLFRMLLGD 381 (425)
T ss_pred --------cccCCHHHHHHHHHHHhcCC
Confidence 47999999999999999986
No 19
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.65 E-value=4.1e-07 Score=106.15 Aligned_cols=148 Identities=19% Similarity=0.345 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccccccCcCcchhHHHHHHHHHHHHHhcC-------------CCCccccchhh-
Q 005350 478 VWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS-------------PNGQTFLSNGE- 543 (701)
Q Consensus 478 ~~~~i~~~f~~iF~~E~ilKi~a~G~~~y~~~~wn~fD~ivv~~s~i~~i~~~~~-------------~~~~~~~~~~~- 543 (701)
..+.+.++|.++|+++-+.++.-++.++|+++.||+.|+.++.++++..++.... .+..++.+-..
T Consensus 467 l~~vvf~l~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~ 546 (798)
T KOG3599|consen 467 LCEVVFLLFVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEV 546 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHH
Confidence 3456777888999999999999888889999999999999999988877664221 11112211111
Q ss_pred ---------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCC
Q 005350 544 ---------WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLE 614 (701)
Q Consensus 544 ---------~l~~lr~~RvlRllrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~ifAiiG~~lF~g~~~~~n~~~~ 614 (701)
+.-++-.+-.+|++|+++.++.++++-.|+.++++.++.+++..+++++.||++|..+||...
T Consensus 547 a~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v-------- 618 (798)
T KOG3599|consen 547 AQWNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV-------- 618 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--------
Confidence 122344456688999999999999999999999999999999999999999999999999865
Q ss_pred CCccccccccccCCCCHHHHHHHHHHHHhc
Q 005350 615 ETDLADDDYLLFNFNDYPNGMVTLFNLLVM 644 (701)
Q Consensus 615 ~~~~~~~~y~~~nF~~f~~al~tLf~i~t~ 644 (701)
-||+||.+|++|++..+-|
T Consensus 619 -----------~~f~~f~~s~~t~~~~~~G 637 (798)
T KOG3599|consen 619 -----------SDFRTFVASIVTLLRYILG 637 (798)
T ss_pred -----------CChHHHHHHHHHHHHHHhc
Confidence 4899999999999998887
No 20
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.50 E-value=6.4e-06 Score=93.77 Aligned_cols=203 Identities=16% Similarity=0.199 Sum_probs=140.0
Q ss_pred HHHHHHH---HHHHHHHHHHhcCchhhhcccccceehhhHHHHHHHHHHHhhhc---CCCC-----------cc------
Q 005350 139 EGITLVI---LIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL---SPIA-----------FN------ 195 (701)
Q Consensus 139 e~v~~~i---f~~E~~lk~~~~g~~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~---~~~~-----------~~------ 195 (701)
|++...+ ++.|-+..++..|.+.|+++.||++|++.+.+.+..++.-.... .... ..
T Consensus 387 E~li~~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E 466 (822)
T KOG3609|consen 387 EILIYLWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAE 466 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHH
Confidence 5554444 45777788889999999999999999998888887776543310 0000 00
Q ss_pred --chhhHHHHHHHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cc-----cccc
Q 005350 196 --FLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED-------TV-----QGNM 261 (701)
Q Consensus 196 --~~~lr~~R~lR~lrli~~~~~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~-------~~-----~~~~ 261 (701)
...--++-.+|.+-+...++.+--+--++.+++.++...++++.++++.|++=-.+++-- .+ +...
T Consensus 467 ~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~~ 546 (822)
T KOG3609|consen 467 GLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTTD 546 (822)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhcccccccccccc
Confidence 112345677888888888888888888889999999999999999999998655555531 11 1122
Q ss_pred ccccHHHHHHHHHHHH-hcCCCchhhHhh--hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005350 262 VFTSFGTTLYQMFVLF-TTSNNPDVWIPA--YKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMR 338 (701)
Q Consensus 262 ~F~~~~~s~~~lf~l~-T~~~w~dv~~p~--~~~~~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~~~~~~~~~~~~~r 338 (701)
.|+++.+|+-+||=.+ +..+=.++..+. .-...+..+-|.+|.++...+++||.+|.+.++|++....+-.|-+-.|
T Consensus 547 ~fsti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEWKFAR 626 (822)
T KOG3609|consen 547 SFSTIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEWKFAR 626 (822)
T ss_pred ccccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHHHHHH
Confidence 5999999988877333 333311222111 1233455778899999999999999999999999988776655555555
Q ss_pred HHH
Q 005350 339 RRT 341 (701)
Q Consensus 339 ~~~ 341 (701)
.+.
T Consensus 627 AKL 629 (822)
T KOG3609|consen 627 AKL 629 (822)
T ss_pred HHH
Confidence 443
No 21
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.49 E-value=4.3e-09 Score=108.08 Aligned_cols=198 Identities=14% Similarity=0.117 Sum_probs=142.3
Q ss_pred cHHHHHHHhcccch-------hHHHHHHHHHHHHHHHHHHhhccccccc----------hhhhHHHHHHHHHHHHHHHHH
Q 005350 432 SPFSEKLKAFIRST-------KFGYMISIILIVNLVAVIVETTLDIQES----------SLQSVWQEVEFVFGWIYVLEM 494 (701)
Q Consensus 432 s~~r~~~~~iv~~~-------~f~~~i~~~Illn~i~l~~~~~~~~~~~----------~~~~~~~~i~~~f~~iF~~E~ 494 (701)
..+|+++|+-.++| .|.++.-+.|.++++.-++|+.+-...+ .+...+..+|..++.+|+.|+
T Consensus 165 ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIFT~EY 244 (632)
T KOG4390|consen 165 LSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIFTGEY 244 (632)
T ss_pred chHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEEeeHHH
Confidence 34688888888776 3788888889999998888876422111 122345568999999999999
Q ss_pred HHHHhhcCc-ccccccCcCcchhHHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 005350 495 ALKIYSYGF-ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATF 573 (701)
Q Consensus 495 ilKi~a~G~-~~y~~~~wn~fD~ivv~~s~i~~i~~~~~~~~~~~~~~~~~l~~lr~~RvlRllrli~~~~~lr~l~~tl 573 (701)
+||+++..- -+|.|+...++|.+.+.--.|+++++-..+-+. ..--+|+||++|++|.-++.+++|.+.-|+
T Consensus 245 lLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSG-------aFVTLRVFRVFRIFKFSRHSQGLRILGYTL 317 (632)
T KOG4390|consen 245 LLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSG-------AFVTLRVFRVFRIFKFSRHSQGLRILGYTL 317 (632)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCccccc-------eeEEEEeeeeeeeeeecccccccchhhhhH
Confidence 999999853 478899999999988777666655432222111 122378899999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCccccccccccCCCCHHHHHHHHHHHHhccChHHHHHH
Q 005350 574 LTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQL 653 (701)
Q Consensus 574 ~~~~~~l~~~~~l~~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~al~tLf~i~t~e~W~~im~~ 653 (701)
..+...++-+++-+-+.+++||.+....=.|.. ..+|.++|.|+---..-+|.=|+.+..-.
T Consensus 318 KSCASELGFLlFSLtMAIIIFATvMfYAEKg~~------------------at~FTsIPaaFWYTIVTmTTLGYGDMVp~ 379 (632)
T KOG4390|consen 318 KSCASELGFLLFSLTMAIIIFATVMFYAEKGSS------------------ATKFTSIPAAFWYTIVTMTTLGYGDMVPS 379 (632)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccc------------------ccccccCcHhHhhheeeeeeccccccchH
Confidence 999999887777777777788865433211111 36899999998666656666666665444
Q ss_pred h
Q 005350 654 Q 654 (701)
Q Consensus 654 ~ 654 (701)
.
T Consensus 380 T 380 (632)
T KOG4390|consen 380 T 380 (632)
T ss_pred H
Confidence 3
No 22
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.48 E-value=9.7e-07 Score=95.32 Aligned_cols=165 Identities=16% Similarity=0.232 Sum_probs=111.9
Q ss_pred HHHHHHHhcccchh------HHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCc---
Q 005350 433 PFSEKLKAFIRSTK------FGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGF--- 503 (701)
Q Consensus 433 ~~r~~~~~iv~~~~------f~~~i~~~Illn~i~l~~~~~~~~~~~~~~~~~~~i~~~f~~iF~~E~ilKi~a~G~--- 503 (701)
+.+.+++.+.+.|. +..++.++++.++|+-++.+. ++........+.++|.+++++|.+|+++|+++.|-
T Consensus 76 r~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi-~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~r 154 (654)
T KOG1419|consen 76 RIQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTI-EEYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCCR 154 (654)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 45667788888763 455666666665555555443 22222445678999999999999999999999984
Q ss_pred -------ccccccCcCcchhHHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 005350 504 -------ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTL 576 (701)
Q Consensus 504 -------~~y~~~~wn~fD~ivv~~s~i~~i~~~~~~~~~~~~~~~~~l~~lr~~RvlRllrli~~~~~lr~l~~tl~~~ 576 (701)
-+|.+++..++|+++++.+++...+ .+.+.. -....+|-+|.+.++|++|+=++-..++.+...+..-
T Consensus 155 YrG~~GRLrFarkp~cvIDiivi~Asi~vl~~---g~qG~v--fatSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH 229 (654)
T KOG1419|consen 155 YRGWYGRLRFARKPFCVIDIIVIIASIAVLAA---GSQGNV--FATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAH 229 (654)
T ss_pred cccceeeEEeecCCceEEEEeeeeeeeeEEEe---cCccce--eehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhh
Confidence 3677899999999988776542221 122221 1234578888888889998888888899988888777
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005350 577 IPSLMPYLGTIFCVQCIYCSLGVQIFGG 604 (701)
Q Consensus 577 ~~~l~~~~~l~~~~~~ifAiiG~~lF~g 604 (701)
-+.+..-..+-|++ .+|+..-+++=.-
T Consensus 230 ~~ELiTt~YIGFL~-LIfsSflVYLaEK 256 (654)
T KOG1419|consen 230 SKELITTWYIGFLV-LIFSSFLVYLAEK 256 (654)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhc
Confidence 77666555444433 3555555555443
No 23
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.08 E-value=0.00011 Score=88.68 Aligned_cols=161 Identities=12% Similarity=0.212 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhc------C---------chhhhcccccceehhhHHHHHHHHHHHhhhcC-CCCccchhhH
Q 005350 137 VYEGITLVILIIHTFFPITYE------G---------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLS-PIAFNFLPLR 200 (701)
Q Consensus 137 ~~e~v~~~if~~E~~lk~~~~------g---------~~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~~-~~~~~~~~lr 200 (701)
++|.++-++|.+|++++.... + .++|+|. |-++|++.+++..+ +.+..... ........+|
T Consensus 96 ~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~-~f~~Dlis~lP~~~--i~~~~~~~~~~~~~~~~l~ 172 (823)
T PLN03192 96 IADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLST-WFLMDVASTIPFQA--LAYLITGTVKLNLSYSLLG 172 (823)
T ss_pred eHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHH-hHHHHHHHHhHHHH--HHHHhcCCccchHHHHHHH
Confidence 458999999999999976421 1 2457754 88999987776532 22211100 0001122334
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccc-------cc------cccH
Q 005350 201 IAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED-TVQGN-------MV------FTSF 266 (701)
Q Consensus 201 ~~R~lR~lrli~~~~~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~-~~~~~-------~~------F~~~ 266 (701)
++|++|..|+.+....+......-. ..-.+..++++++++.-.+|.+.+.+-.. +.++. .+ +..+
T Consensus 173 llrl~Rl~ri~~~~~~le~~~~~~~-~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Y 251 (823)
T PLN03192 173 LLRFWRLRRVKQLFTRLEKDIRFSY-FWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRY 251 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHH
Confidence 4444444444333333332221100 01122233333333333333333332211 11111 11 2235
Q ss_pred HHHHHHHHHHHhcCCCchhhHhhhccCcchHHHHHH
Q 005350 267 GTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVL 302 (701)
Q Consensus 267 ~~s~~~lf~l~T~~~w~dv~~p~~~~~~~~~ifFi~ 302 (701)
..|+++..+++||.|++|+ .|.....++.++++++
T Consensus 252 i~slYwai~TmtTVGYGDi-~p~t~~E~i~~i~~ml 286 (823)
T PLN03192 252 ISAIYWSITTMTTVGYGDL-HAVNTIEMIFIIFYML 286 (823)
T ss_pred HHHHHHHHHHHhhccCCCc-CCCccchHHHHHHHHH
Confidence 5699999999999999996 5665555554444443
No 24
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=98.05 E-value=3.5e-05 Score=92.16 Aligned_cols=200 Identities=12% Similarity=-0.027 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccccccCcCcchhHHHHHHHHHHHHHhc-----CCCC----------ccccchhh
Q 005350 479 WQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLA-----SPNG----------QTFLSNGE 543 (701)
Q Consensus 479 ~~~i~~~f~~iF~~E~ilKi~a~G~~~y~~~~wn~fD~ivv~~s~i~~i~~~~-----~~~~----------~~~~~~~~ 543 (701)
.+++.......+..+-...++..|...|+++.||++|++.....++..+.... .... ........
T Consensus 391 ~e~~~~~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (743)
T TIGR00870 391 LEMLIVTWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEA 470 (743)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHH
Confidence 34445556667788888888888988999999999999654333332211110 0000 00000112
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHhccccccc-CCCCCCCccccc
Q 005350 544 WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIP-SLMPYLGTIFCVQCIYCSLGVQIFGGIVNAG-NAKLEETDLADD 621 (701)
Q Consensus 544 ~l~~lr~~RvlRllrli~~~~~lr~l~~tl~~~~~-~l~~~~~l~~~~~~ifAiiG~~lF~g~~~~~-n~~~~~~~~~~~ 621 (701)
.+-+..++..+|++.+++.++.+--+..++.+.+. .++.++.+++++++-||+...++|+...... +...+.++ ...
T Consensus 471 l~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~-~~~ 549 (743)
T TIGR00870 471 LFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHA-RSC 549 (743)
T ss_pred HHHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-ccc
Confidence 44556666777777777777776667778888888 9999999999999999999999997643211 10000000 001
Q ss_pred cccccCCCCHHHHHHHHHHHHhccChHHHHHHhhhhcCCCCCccccccCCCCcceeeehhhhhhccceeeeccc
Q 005350 622 DYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQLQRVDRNCLDSSIFRQLLPNNCFTTIEFGHSFCLGGILCRNGT 695 (701)
Q Consensus 622 ~y~~~nF~~f~~al~tLf~i~t~e~W~~im~~~~~~~~c~~~~~~~~~~~~~cg~~~~y~~~~~~~~~~~~~~~ 695 (701)
......|.++..++.+||..+-|++-. ....|...+. -..+.|+.|.++.+|++.|.+
T Consensus 550 ~~~~~~f~~~~~s~~~lf~~~~G~~~~-------~~~~~~~~~~---------~~~il~~~y~~i~~ilLlNlL 607 (743)
T TIGR00870 550 EKQGNAYSTLFETSQELFWAIIGLGDL-------LANEHKFTEF---------VGLLLFGAYNVIMYILLLNML 607 (743)
T ss_pred ccccccccCHHHHHHHHHHHHcCCccc-------ccccccchhH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 112368999999999999888887422 1111111110 125889999999999888854
No 25
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.75 E-value=0.0017 Score=73.93 Aligned_cols=167 Identities=11% Similarity=0.172 Sum_probs=120.1
Q ss_pred cCchhhhcccccceehhhHHHHHHHHHHHhhhcCCCCcc--chhh-HHHHHHHHHHHHhccHHHHHHHHHHHHhHHHHHH
Q 005350 157 EGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFN--FLPL-RIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLN 233 (701)
Q Consensus 157 ~g~~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~~~~~~~--~~~l-r~~R~lR~lrli~~~~~lr~~~~~l~~~~~~i~~ 233 (701)
..+++|+-+.-|+++.++...+++....+... .+.... ..++ -.+-..+.+.++...+.....+..+....++++.
T Consensus 586 qqk~~Y~~~i~Nimew~iyts~li~v~~~~~~-~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktflk 664 (929)
T KOG0510|consen 586 QQKRHYFMDIENIMEWFIYTSALITVYPLFFE-ITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTFLK 664 (929)
T ss_pred HHHHHHHhhhHHHHHHHHHhhhhheeehhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHHHH
Confidence 34567999999999999888877644332210 000000 0011 1245567778888888777777777778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHhcCCCch-hh-Hhhh-----ccCcchHHHHHHHHHH
Q 005350 234 VLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPD-VW-IPAY-----KASRWYCLFFVLYVLI 306 (701)
Q Consensus 234 ~~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~l~T~~~w~d-v~-~p~~-----~~~~~~~ifFi~~~~l 306 (701)
.+.++.++++.|++--+.+|+... .|.|.+-|....|+++-+|+--. ++ .+.+ .....+.+-|+.|+++
T Consensus 665 ~f~vfs~lliaF~lsFYVll~~~~----eFs~p~ms~l~t~~MMiGe~dft~~~~~~~~~~~~l~~~v~s~~~f~~F~If 740 (929)
T KOG0510|consen 665 SFMVFSILLIAFGLSFYVLLNKSS----EFSNPFMSKLETFVMMIGENDFTKVMFTEEFKRNSLAHPVLSFAIFVLFTIF 740 (929)
T ss_pred HHHHHHHHHHHhhhhheeeecCCC----CcCCCcchhhhhHHHhhcccccccccccchhhcCcccchHHHHHHHHHHHHH
Confidence 999999999999988888888753 49999999999999999876533 22 3333 3334456788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005350 307 GVYFVTNLILAVVYDSFKSQLA 328 (701)
Q Consensus 307 ~~~~~lnLfiaVi~~~f~~~~~ 328 (701)
++.++|||.+|.-+..-++..+
T Consensus 741 mtIvLMNLLiGLAV~DIq~vqk 762 (929)
T KOG0510|consen 741 MTIVLMNLLIGLAVGDIQGVQK 762 (929)
T ss_pred HHHHHHHHHhhhhhhhHHHHHH
Confidence 9999999999999987765444
No 26
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=97.04 E-value=0.0046 Score=74.84 Aligned_cols=73 Identities=10% Similarity=0.095 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhc------C---------cccccccC
Q 005350 446 KFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSY------G---------FENYWRDG 510 (701)
Q Consensus 446 ~f~~~i~~~Illn~i~l~~~~~~~~~~~~~~~~~~~i~~~f~~iF~~E~ilKi~a~------G---------~~~y~~~~ 510 (701)
+|+.++.++++.+++.+-++.... +......+.++|.++.++|.+|++++.... | .++|++ .
T Consensus 63 ~Wd~~~~~~~~y~~~~~p~~~~F~--~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~-~ 139 (823)
T PLN03192 63 WWETLMVVLVAYSAWVYPFEVAFL--NASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLS-T 139 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHee--CCCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHH-H
Confidence 688888888888888877765432 112223467789999999999999997543 1 256775 4
Q ss_pred cCcchhHHHHH
Q 005350 511 QNRFDFLVTWV 521 (701)
Q Consensus 511 wn~fD~ivv~~ 521 (701)
|-++|++.++.
T Consensus 140 ~f~~Dlis~lP 150 (823)
T PLN03192 140 WFLMDVASTIP 150 (823)
T ss_pred hHHHHHHHHhH
Confidence 77999886543
No 27
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.85 E-value=0.098 Score=63.29 Aligned_cols=188 Identities=15% Similarity=0.199 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhcC-------chhhhcccccceehhhHHHHHHHHHHHhhhcCCCCccchh----hHHHHHHHHHHHHhcc
Q 005350 146 LIIHTFFPITYEG-------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLP----LRIAPYIRVVFFILNI 214 (701)
Q Consensus 146 f~~E~~lk~~~~g-------~~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~~~~~~~~~~----lr~~R~lR~lrli~~~ 214 (701)
+++|.+=++...+ .+-||.+.||++|.+.+.+.++..+.-.... +.-..-++ --++=.+|++-.+..+
T Consensus 835 l~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~-~~~~~GRvIl~~d~i~~t~rLl~~f~V~ 913 (1381)
T KOG3614|consen 835 LFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPI-DSIYSGRVILCFDFILFTLRLLHYFTVS 913 (1381)
T ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCc-cceecceeeeeehHHHHHHHHhhheeec
Confidence 4567766665432 2459999999999999988887665432210 01011121 1223345666666666
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc--cccccHHHHHHHHHHHHhcCCC-chh--h---
Q 005350 215 RQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGN--MVFTSFGTTLYQMFVLFTTSNN-PDV--W--- 286 (701)
Q Consensus 215 ~~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~~~~~~--~~F~~~~~s~~~lf~l~T~~~w-~dv--~--- 286 (701)
+.+-=-+..+.+.++++..+++++.+.++.|++ +-|----+.++. .-|.++ ++.-|-++-++-+ .++ -
T Consensus 914 ~~lGPyI~mv~kMm~dmf~flfllaV~LlsfGV-arQaIl~P~e~~~w~l~R~i---~y~PYlmifGeV~a~eID~~~~e 989 (1381)
T KOG3614|consen 914 KQLGPYIVMVKKMMKDMFFFLFLLAVVLLSFGV-ARQAILRPDEPRHWWLFRNI---FYWPYLMLFGEVPADEIDTCTCE 989 (1381)
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhcCCCCCchHHHHHHH---HHHHHHHHhccccHhhhhhhccc
Confidence 776666666777888888877777777777763 333222222221 113332 2222222222222 111 0
Q ss_pred -----Hh----------hh-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005350 287 -----IP----------AY-KASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMR 338 (701)
Q Consensus 287 -----~p----------~~-~~~~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~~~~~~~~~~~~~r 338 (701)
.| .- ..++...+-.++|+++.+.+++||++|.....|.+..++..+--+.+|
T Consensus 990 ~~~~~~p~~~~~s~~~~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~iWkFQR 1057 (1381)
T KOG3614|consen 990 KSFCGEPLRYESSPGNPSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQENSDQIWKFQR 1057 (1381)
T ss_pred ccccCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 01 11 233344567789999999999999999999999887766544433333
No 28
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.80 E-value=0.024 Score=65.38 Aligned_cols=152 Identities=12% Similarity=0.124 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHhhcCcccccccCcCcchhHHHHHHHHHHHHHhcC-----CCC------------ccccchhhHHH
Q 005350 484 FVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS-----PNG------------QTFLSNGEWIR 546 (701)
Q Consensus 484 ~~f~~iF~~E~ilKi~a~G~~~y~~~~wn~fD~ivv~~s~i~~i~~~~~-----~~~------------~~~~~~~~~l~ 546 (701)
+.-++=++.|=+-.++..|++.|++..||++|+..+.+-+...++.... ... ...+...+..-
T Consensus 391 ~~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E~lfA 470 (822)
T KOG3609|consen 391 YLWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAEGLFA 470 (822)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHHHHHH
Confidence 3344557778888999999999999999999999877655544432110 000 00011123445
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCcccccccccc
Q 005350 547 YLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLF 626 (701)
Q Consensus 547 ~lr~~RvlRllrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~ 626 (701)
+..+|-.+|++-+++.++.+-=+--++-+.+..+..++++..++++.|++=-.|++......-....++....+ ..
T Consensus 471 iA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~----~~ 546 (822)
T KOG3609|consen 471 IANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKT----TD 546 (822)
T ss_pred HHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhcccccccccc----cc
Confidence 67778888888888887777666667778888888999999999999996666676654322111111111111 12
Q ss_pred CCCCHHHHHHHHH
Q 005350 627 NFNDYPNGMVTLF 639 (701)
Q Consensus 627 nF~~f~~al~tLf 639 (701)
.|.++..+.-+||
T Consensus 547 ~fsti~eS~~tLF 559 (822)
T KOG3609|consen 547 SFSTIGESSKTLF 559 (822)
T ss_pred ccccHHHHHHHHH
Confidence 7999999999999
No 29
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=96.49 E-value=0.042 Score=65.33 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=43.5
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005350 205 IRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED 255 (701)
Q Consensus 205 lR~lrli~~~~~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~ 255 (701)
+-.+-++.+-..+..+++++-+...+|.-.+++-++.+++|||+|+.+|.+
T Consensus 2396 iLLFDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkd 2446 (2706)
T KOG3533|consen 2396 ILLFDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKD 2446 (2706)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334455666788889999999999999999999999999999999999984
No 30
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.45 E-value=0.39 Score=55.61 Aligned_cols=105 Identities=21% Similarity=0.377 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-------------ccccccHHHHHHHHHHHHhcCCCchhhHhhhccC
Q 005350 227 MLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQG-------------NMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKAS 293 (701)
Q Consensus 227 ~~~~i~~~~~l~~~~~~~fai~g~~lF~~~~~~-------------~~~F~~~~~s~~~lf~l~T~~~w~dv~~p~~~~~ 293 (701)
.+.+++..+++..+|++=||.--+.+|.+..+. ....++++..++++|...-+ ..| +|...+.
T Consensus 539 I~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig--~~d--l~~~~~~ 614 (782)
T KOG3676|consen 539 IFGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIG--MGD--LEACENT 614 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhh--hhh--hhhcccc
Confidence 367899999999999999998888888753221 12255677888888876543 334 3443333
Q ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005350 294 ---RWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMD 335 (701)
Q Consensus 294 ---~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~~~~~~~~~~~ 335 (701)
....+-|++|+++.+.+++||+||..-|.|.+..+++..+-+
T Consensus 615 ~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk 659 (782)
T KOG3676|consen 615 DYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWK 659 (782)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHH
Confidence 445678999999999999999999999999887766533333
No 31
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.43 E-value=0.13 Score=60.03 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh--c---------Cc----hhhhcccccceehhhHHHHHHHHHHHhhhc-----CCCC-cc
Q 005350 137 VYEGITLVILIIHTFFPITY--E---------GS----PIFWKSTYTRLKVLCLLILVADFLVYGLYL-----SPIA-FN 195 (701)
Q Consensus 137 ~~e~v~~~if~~E~~lk~~~--~---------g~----~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~-----~~~~-~~ 195 (701)
+++.+.=++|+++++++... . .+ .+|++ .|-++|++.++.. +.+...... .... .-
T Consensus 121 v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP~--~~i~~~~~~~~~~~~~~~~~l 197 (727)
T KOG0498|consen 121 VLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLPF--DQIVVLVVIGSTSLALESTIL 197 (727)
T ss_pred eHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcCh--hhheeeeeecccchhhhHHHH
Confidence 45888888999999996641 1 11 45999 9999999877663 222221100 0000 01
Q ss_pred chhhHHHHHHHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc----c--cccc----------
Q 005350 196 FLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFE----D--TVQG---------- 259 (701)
Q Consensus 196 ~~~lr~~R~lR~lrli~~~~~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~----~--~~~~---------- 259 (701)
...+.+.|++|..|++..++.+.+.......+...- .+.+++++++.--+.|-..|- . .+..
T Consensus 198 ~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~--~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~ 275 (727)
T KOG0498|consen 198 VGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAG--AALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGR 275 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccc
Confidence 224555666666666666666666665554433322 334444444444444444442 0 0110
Q ss_pred ---ccc----ccc------HHHHHHHHHHHHhcCCCchhhHhhhccCcchHHHHHHHHHHH
Q 005350 260 ---NMV----FTS------FGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIG 307 (701)
Q Consensus 260 ---~~~----F~~------~~~s~~~lf~l~T~~~w~dv~~p~~~~~~~~~ifFi~~~~l~ 307 (701)
..+ |.. +..++|+-++.+|+.|++++ ...+..=.+|-|.++++|
T Consensus 276 ~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~----~s~~~~E~iFsi~~mi~G 332 (727)
T KOG0498|consen 276 LLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLV----HANNMGEKIFSIFIMLFG 332 (727)
T ss_pred ccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCcc----CCCCcHHHHHHHHHHHHh
Confidence 011 332 34578888899999999985 222222234555555544
No 32
>PRK10537 voltage-gated potassium channel; Provisional
Probab=96.08 E-value=0.083 Score=57.97 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=65.0
Q ss_pred cchhhHHHHHHHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHH
Q 005350 195 NFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMF 274 (701)
Q Consensus 195 ~~~~lr~~R~lR~lrli~~~~~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf 274 (701)
..+.++.+-+++.+.++.+.+.......++. .-+.++++..++.|+++|...+++..+ +.+.++.++++..+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~l~~~~~~~~l~~~~~~g~~~~~~~f~--~~~~s~~dA~y~sv 177 (393)
T PRK10537 106 WLKFLIGYCIVLLVALLIYRRDFDRSSLAAG------TLFAVISITSLLFYSTFGALYLGDGFS--PPIESLSTAFYFSI 177 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHccccC--cCCCCHHHHHHhhh
Confidence 3566788888888888887777665532221 233444555567888899888876432 45789999999999
Q ss_pred HHHhcCCCchhhHhhhccCcc
Q 005350 275 VLFTTSNNPDVWIPAYKASRW 295 (701)
Q Consensus 275 ~l~T~~~w~dv~~p~~~~~~~ 295 (701)
+++||.|++|+ .|....++.
T Consensus 178 vt~tTvGyGdi-~p~t~~grl 197 (393)
T PRK10537 178 VTMSTVGYGDI-VPVSESARL 197 (393)
T ss_pred eeeecccCCCC-CCCCHHHHH
Confidence 99999999996 455444443
No 33
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=95.84 E-value=0.13 Score=54.74 Aligned_cols=118 Identities=17% Similarity=0.261 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--ccccccHHHHHHHHHHHHhc
Q 005350 202 APYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQG--NMVFTSFGTTLYQMFVLFTT 279 (701)
Q Consensus 202 ~R~lR~lrli~~~~~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~~~~~--~~~F~~~~~s~~~lf~l~T~ 279 (701)
+-.+-++|.+.+++.-..++-++..++|+++... .+...+|. |+-+-|=-.-| ...|.|.-..--.||.++-+
T Consensus 385 LVW~GVIRYLgfF~~YNvlIlTl~~alPkVlRFc---~ca~mIYl--Gy~FCGWIVLGPYHdKFrsLntvsECLFSLING 459 (566)
T KOG3733|consen 385 LVWFGVIRYLGFFKTYNVLILTLKKALPKVLRFC---CCAAMIYL--GYCFCGWIVLGPYHDKFRSLNTVSECLFSLING 459 (566)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHH---HHHHHHHH--HHhheeeEEecchHHhhhhHHHHHHHHHHhhCc
Confidence 3445556666777888899999999999877754 44444443 44433311112 23477777666677766654
Q ss_pred CCCchhhHhhh----ccCcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005350 280 SNNPDVWIPAY----KASRW----YCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLA 328 (701)
Q Consensus 280 ~~w~dv~~p~~----~~~~~----~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~~~~ 328 (701)
|-|...+ ..+.+ +.+|.-+|+-+--|++++||+|+|.++|...++
T Consensus 460 ----DDMFaTFA~mqqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTIK~ 512 (566)
T KOG3733|consen 460 ----DDMFATFATMQQKSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTIKA 512 (566)
T ss_pred ----hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 5464433 12222 357888999999999999999999999986554
No 34
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.54 E-value=0.017 Score=63.15 Aligned_cols=136 Identities=12% Similarity=0.139 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCc-hhhhcccccceehhhHHHHHHHHHHHhhhcCCCCccchhhHHHHHHHHHHHHhccH
Q 005350 137 VYEGITLVILIIHTFFPITYEGS-PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIR 215 (701)
Q Consensus 137 ~~e~v~~~if~~E~~lk~~~~g~-~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~~R~lR~lrli~~~~ 215 (701)
-+++.|.++|.+-..+|.++..- --||-....++|++.+-.+++++-+ -+..--+|.||.+|++....
T Consensus 166 qidlafnifflvyffirfiaasdklwf~lemys~vdfftippsfvsiyl-----------~r~wlglrflralrlmtvpd 234 (1103)
T KOG1420|consen 166 QIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYL-----------NRSWLGLRFLRALRLMTVPD 234 (1103)
T ss_pred HhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchheEEEe-----------ccchHHHHHHHHHHhccHHH
Confidence 35778888888888888776543 3377888889999888777664311 12222245566666665444
Q ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-----HHHHHHHHHHHHhcCCCchh
Q 005350 216 QLRDTLFVLAGM-LGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTS-----FGTTLYQMFVLFTTSNNPDV 285 (701)
Q Consensus 216 ~lr~~~~~l~~~-~~~i~~~~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~-----~~~s~~~lf~l~T~~~w~dv 285 (701)
-++ .++.++.+ .-.+..+.-++....+--| =-..+-.+..++..+|.| +.++.+-+.+.++|.||+||
T Consensus 235 ilq-ylnilktsssirl~qlvsifisvwltaa-g~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdv 308 (1103)
T KOG1420|consen 235 ILQ-YLNILKTSSSIRLVQLVSIFISVWLTAA-GFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDV 308 (1103)
T ss_pred HHH-HHHHHhccchhhHHHHHHHHHHHHHhhc-ceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccce
Confidence 333 23333211 1122232222222222222 112333333333444553 45566667788999999997
No 35
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=94.83 E-value=0.026 Score=44.94 Aligned_cols=64 Identities=30% Similarity=0.484 Sum_probs=48.4
Q ss_pred HHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhh
Q 005350 342 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 406 (701)
Q Consensus 342 l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 406 (701)
++++|+.++.+++|.++.++.......+..... +....+..+.++...|.+++|.|+.+||...
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMS-DEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST-HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhccccc-HHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 678999999999999999987777665533221 1223345566799999999999999999764
No 36
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=93.60 E-value=0.48 Score=39.23 Aligned_cols=76 Identities=28% Similarity=0.363 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHhcCCCchhhHhhhccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 005350 239 LLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAV 318 (701)
Q Consensus 239 ~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~l~T~~~w~dv~~p~~~~~~~~~ifFi~~~~l~~~~~lnLfiaV 318 (701)
+++++.++...+.+ ++ + ..-.++.++++..+..+||.|++|+ .|.... ..++-+. ..+.+..++.++++.
T Consensus 3 ~~~~l~~~~~~~~~-~~---~-~~~~~~~da~yfs~~t~tTvGyGDi-~p~t~~---gr~~~~~-~~~~G~~~~~~~~~~ 72 (79)
T PF07885_consen 3 LLLVLAFGAIFFYI-SE---G-SEKWSFIDALYFSFVTITTVGYGDI-VPQTPA---GRIFTII-YMLIGIFLFALFLSV 72 (79)
T ss_dssp HHHHHHHHHHHHHH-TT---S-SSTTSHHHHHHHHHHHHTT---SSS-STSSHH---HHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHH-HH---h-cccCCHHHHHHHHHHHHhcccCCCc-cCCccc---hHHHHHH-HHHHHHHHHHHHHHH
Confidence 34444555444444 21 2 3467889999999999999999995 555333 3334433 344456667777777
Q ss_pred HHHHHH
Q 005350 319 VYDSFK 324 (701)
Q Consensus 319 i~~~f~ 324 (701)
+.+-+.
T Consensus 73 ~~~~l~ 78 (79)
T PF07885_consen 73 LASVLT 78 (79)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 765543
No 37
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=93.22 E-value=0.39 Score=40.93 Aligned_cols=67 Identities=24% Similarity=0.288 Sum_probs=53.9
Q ss_pred HHHHHHHHhhcc-ccCCCCCHHHHHHHHHH-hhhccCCCCCCh-HHHHHHhhhhcccCCcccchhhhhhhHHHHH
Q 005350 340 RTLGKAFNLIDN-YNVGFLNKEQCIKLFEE-LNKYRTLPNISR-EEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (701)
Q Consensus 340 ~~l~~af~~L~~-~~~~~l~~~q~~~~~~~-l~~~~~~~~~~~-~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i~ 411 (701)
..+..+|+..+. ++++.++.++...++.. +. ..++. ++.+.++..+|.++||+|+.+||..+...+.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-----~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLP-----HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-----hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 457789999999 89999999987776655 42 22455 8899999999999999999999987766544
No 38
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=92.62 E-value=0.83 Score=38.58 Aligned_cols=73 Identities=23% Similarity=0.309 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhcc--ccCCCCCHHHHHHHHHH-hhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHHH
Q 005350 338 RRRTLGKAFNLIDN--YNVGFLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (701)
Q Consensus 338 r~~~l~~af~~L~~--~~~~~l~~~q~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i~ 411 (701)
+.+.+.++|..++. +++|.++.++....++. +..... ...+..+.+.++...|.++++.++.++|..++....
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~-~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLK-NQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhcc-CCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 34458889999999 79999999887766543 211111 235678899999999999999999999988766543
No 39
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=92.00 E-value=0.92 Score=39.12 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHHHh
Q 005350 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 412 (701)
Q Consensus 339 ~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i~~ 412 (701)
...+.++|..++.+++|.++.++....++.. ..++++.+.++...|.++++.++.+||..++..+..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-------~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-------GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 3457789999999999999998876665432 356788999999999999999999999887765543
No 40
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=91.73 E-value=0.46 Score=45.02 Aligned_cols=65 Identities=28% Similarity=0.502 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhH
Q 005350 338 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (701)
Q Consensus 338 r~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 407 (701)
.++.++.||++.+.+++|.++.......++.+. .+.+.++++.++...|++++|.++.++|.+.+
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg-----e~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLG-----ERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc-----ccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 356788999999999999999988666555442 56788999999999999999999999997653
No 41
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=91.03 E-value=1.3 Score=37.58 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=52.7
Q ss_pred HHHHHHHHhhc-cccCC-CCCHHHHHHHHHH-hhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHH
Q 005350 340 RTLGKAFNLID-NYNVG-FLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (701)
Q Consensus 340 ~~l~~af~~L~-~~~~~-~l~~~q~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i 410 (701)
..+.++|+..+ .+++| .++.++...+++. +.... ....++++.+.++..+|.+++|+++.+||..+...+
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l-g~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL-EEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh-cCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34778999997 67899 5999987776654 21121 134577889999999999999999999997765543
No 42
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=90.83 E-value=0.97 Score=35.56 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=49.0
Q ss_pred HHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHHH
Q 005350 343 GKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (701)
Q Consensus 343 ~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i~ 411 (701)
+++|..++.+++|.++.++....+..+ ..+.++.+.++...|.++++.++.+||...+..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-------g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-------GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 357888998999999998866554432 23677888999999999999999999987766544
No 43
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=90.65 E-value=1.5 Score=37.43 Aligned_cols=71 Identities=23% Similarity=0.340 Sum_probs=53.7
Q ss_pred HHHHHHHHhhc-cccCC-CCCHHHHHHHHHH-hhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHHH
Q 005350 340 RTLGKAFNLID-NYNVG-FLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (701)
Q Consensus 340 ~~l~~af~~L~-~~~~~-~l~~~q~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i~ 411 (701)
+.++++|+..+ .+++| .++.++....++. +..... ...++.+.+.++...|.++++.++.++|..+...+.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~-~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLD-AQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 44788999997 88999 4999987777653 322111 135678899999999999999999999987765443
No 44
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.20 E-value=1.2 Score=52.14 Aligned_cols=130 Identities=12% Similarity=0.132 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccccc-------chhhhHHHHHHHHHHHHHHHHHHHHHhhc-----------Cc----
Q 005350 446 KFGYMISIILIVNLVAVIVETTLDIQE-------SSLQSVWQEVEFVFGWIYVLEMALKIYSY-----------GF---- 503 (701)
Q Consensus 446 ~f~~~i~~~Illn~i~l~~~~~~~~~~-------~~~~~~~~~i~~~f~~iF~~E~ilKi~a~-----------G~---- 503 (701)
.|++++.+..+.++++-=++.+....+ ......+.+++.+.-++|+++++++.... .+
T Consensus 79 ~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA 158 (727)
T KOG0498|consen 79 VWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIA 158 (727)
T ss_pred HHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHH
Confidence 466666655555544433332211111 01334567788888999999999997532 11
Q ss_pred ccccccCcCcchhHHHHHHHHHHHHHhcCC-CCccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Q 005350 504 ENYWRDGQNRFDFLVTWVIVIGETITLASP-NGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIP 578 (701)
Q Consensus 504 ~~y~~~~wn~fD~ivv~~s~i~~i~~~~~~-~~~~~~~~~~~l~~lr~~RvlRllrli~~~~~lr~l~~tl~~~~~ 578 (701)
.+|++ .|-++|++.++- +..++.+... +............++.+.|+.|+.|+++.++++.........+..
T Consensus 159 ~rYl~-twFiiDlis~lP--~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~aw 231 (727)
T KOG0498|consen 159 KRYLK-TWFLIDLISTLP--FDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAW 231 (727)
T ss_pred HHHHh-hhHHHHHHHhcC--hhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 47888 898999987653 2233222110 000001112356777888888888888888888776666664433
No 45
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=89.26 E-value=1.7 Score=37.23 Aligned_cols=71 Identities=23% Similarity=0.358 Sum_probs=52.9
Q ss_pred HHHHHHHHhhcc-cc-CCCCCHHHHHHHHHH-hhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHHH
Q 005350 340 RTLGKAFNLIDN-YN-VGFLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (701)
Q Consensus 340 ~~l~~af~~L~~-~~-~~~l~~~q~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i~ 411 (701)
..+..+|..++. ++ +|.++.++....+.. ..... ..+.+..+.+.++...|.++++.|+.++|..++...+
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~l-g~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFL-KNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHh-hccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 457789999987 75 699999987766543 21100 1245678899999999999999999999988766443
No 46
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=89.17 E-value=2.3 Score=36.55 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=51.0
Q ss_pred HHHHHHHhhc-cccCCC-CCHHHHHHHHHHh-hhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHHH
Q 005350 341 TLGKAFNLID-NYNVGF-LNKEQCIKLFEEL-NKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (701)
Q Consensus 341 ~l~~af~~L~-~~~~~~-l~~~q~~~~~~~l-~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i~ 411 (701)
.+.++|+..+ .++++. ++.++...++... ..... .+.++.+.+.++.++|.+++|.|+.+||..+...+.
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~-~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLS-SQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcc-cccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 4567899888 457774 9998877665442 11111 233677899999999999999999999988766543
No 47
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=87.52 E-value=3.1 Score=35.40 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=50.0
Q ss_pred HHHHHHHHh-hccccCC-CCCHHHHHHHHHHh-hhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHHH
Q 005350 340 RTLGKAFNL-IDNYNVG-FLNKEQCIKLFEEL-NKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (701)
Q Consensus 340 ~~l~~af~~-L~~~~~~-~l~~~q~~~~~~~l-~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i~ 411 (701)
..+..+|+. .+.++++ .++.++...++... ..... .+.++.+.+.++.++|.++||+|+.+||..+...+.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~-~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTK-NQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhc-CCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 346778887 5555654 89998876665432 11111 244667889999999999999999999987765443
No 48
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=87.01 E-value=2.2 Score=32.08 Aligned_cols=60 Identities=30% Similarity=0.497 Sum_probs=46.9
Q ss_pred HHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhh
Q 005350 342 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 406 (701)
Q Consensus 342 l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 406 (701)
+.++|...+.+.++.++.++....++.+. +..+.+....++...+.++++.++.++|...
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-----EGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 34678888888889999988766654442 5567788889999999999999999988653
No 49
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=86.58 E-value=18 Score=39.71 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHhcCCCchhhHhhhccCcchHHHHHHHHHHHHHHHHH
Q 005350 234 VLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTN 313 (701)
Q Consensus 234 ~~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~l~T~~~w~dv~~p~~~~~~~~~ifFi~~~~l~~~~~ln 313 (701)
++.+.+.++++-||+..+--+...++. .=.|+.+|+|..-+..-+.||+| +.|....++..++.-.+ .+-...+
T Consensus 257 L~vftl~~Wii~sW~~~~cER~~~~~~-~~~~~~nsmWli~iTFlsiGYGD-iVP~TycGr~v~l~tGi----vGa~~sa 330 (489)
T KOG3684|consen 257 LLVFTLSLWIIASWMLRQCERYHDSQD-VTINYLNSMWLIAITFLSIGYGD-IVPNTYCGRGVALLTGI----VGAGCSS 330 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchh-hHHHHHhhHHHHHHHHhhcccCc-ccCCccccchHHHHhhh----hhhhHHH
Confidence 445556666777777666554322221 45578899999888899999999 58888788866655444 3445779
Q ss_pred HHHHHHHHHHHH
Q 005350 314 LILAVVYDSFKS 325 (701)
Q Consensus 314 LfiaVi~~~f~~ 325 (701)
+.+|||-.+..-
T Consensus 331 llvAvisRKLeL 342 (489)
T KOG3684|consen 331 LLVAVIARKLEL 342 (489)
T ss_pred HHHHHHHHHHHH
Confidence 999999888753
No 50
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.40 E-value=3.1 Score=51.01 Aligned_cols=157 Identities=16% Similarity=0.248 Sum_probs=88.9
Q ss_pred HHHHHHHhcccchh---HHHHHHHHHHH--HHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcCc----
Q 005350 433 PFSEKLKAFIRSTK---FGYMISIILIV--NLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGF---- 503 (701)
Q Consensus 433 ~~r~~~~~iv~~~~---f~~~i~~~Ill--n~i~l~~~~~~~~~~~~~~~~~~~i~~~f~~iF~~E~ilKi~a~G~---- 503 (701)
++.++.+++-..|. |-+++..+..+ -+-.+.+++.+ .+ ..++++-++.+..+.+|-+=+++.-+.
T Consensus 779 ~~~~r~~~FysAPIvkFw~~~l~yi~FL~lftYvlLv~~~~--~P----s~~Ew~~~~~iftl~~E~vRq~~~se~~~l~ 852 (1381)
T KOG3614|consen 779 GKLRRIRAFYSAPIVKFWLNVLSYIAFLLLFTYVLLVDFQP--SP----SMWEWILFAWIFTLFLEEVRQIFISESGLLP 852 (1381)
T ss_pred hHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHheeccCC--CC----CccchhHHHHHHHHHHHHHHHHhcCCCcchh
Confidence 45666677777764 33433333222 22233333321 11 334444444555567788777765532
Q ss_pred ---ccccccCcCcchhHHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhH
Q 005350 504 ---ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSL 580 (701)
Q Consensus 504 ---~~y~~~~wn~fD~ivv~~s~i~~i~~~~~~~~~~~~~~~~~l~~lr~~RvlRllrli~~~~~lr~l~~tl~~~~~~l 580 (701)
+-||.+.||..|.+.+..-+++.++.....+.. .....++-+--++=.+|++-.+...+.+-=-+.-+.+-++.+
T Consensus 853 ~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~--~~GRvIl~~d~i~~t~rLl~~f~V~~~lGPyI~mv~kMm~dm 930 (1381)
T KOG3614|consen 853 QKVRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSI--YSGRVILCFDFILFTLRLLHYFTVSKQLGPYIVMVKKMMKDM 930 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhheeEecCccce--ecceeeeeehHHHHHHHHhhheeeccccCchhHHHHHHHHHH
Confidence 469999999999998887777666554431211 111112222334445667777766666554444455556667
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005350 581 MPYLGTIFCVQCIYCSL 597 (701)
Q Consensus 581 ~~~~~l~~~~~~ifAii 597 (701)
+.+++++.++++.|++.
T Consensus 931 f~flfllaV~LlsfGVa 947 (1381)
T KOG3614|consen 931 FFFLFLLAVVLLSFGVA 947 (1381)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 77777777777777754
No 51
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=86.25 E-value=2.6 Score=39.57 Aligned_cols=64 Identities=27% Similarity=0.465 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhH
Q 005350 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (701)
Q Consensus 339 ~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 407 (701)
.+.+.+||++++.+++|+++.++....+..+. .+.+.++.+.+..+.|.+++|.++.++|....
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg-----~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m 147 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLG-----EKLTDEECKEMIREVDVDGDGKVNFEEFVKMM 147 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC-----CcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHH
Confidence 45688899999999999999998766655542 45568899999999999999999888886543
No 52
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=85.66 E-value=0.66 Score=30.53 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=22.4
Q ss_pred HHHHhhhhcccCCcccchhhhhhhHH
Q 005350 383 FELIFDELDDTHDFKINLDEFADLCN 408 (701)
Q Consensus 383 ~~~l~~~~d~~~~~~i~~~ef~~~~~ 408 (701)
.+.+|...|++++|.|+.+||.+.+.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 46789999999999999999987654
No 53
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=85.06 E-value=3.3 Score=38.90 Aligned_cols=66 Identities=29% Similarity=0.403 Sum_probs=55.0
Q ss_pred HHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHH
Q 005350 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (701)
Q Consensus 340 ~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i 410 (701)
..++++|+..+.++.|.++.++....++.+. ...++.+...+..+.|.+++|.|+.++|..++...
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg-----~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLG-----QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-----CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh
Confidence 4577899999999999999988776655552 45678999999999999999999999998876543
No 54
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.61 E-value=25 Score=39.01 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hcC---------chhhhcccccceehhhHHHHHHHHHHHhhhcCCCCccchhhHHH
Q 005350 136 LVYEGITLVILIIHTFFPIT----YEG---------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIA 202 (701)
Q Consensus 136 ~~~e~v~~~if~~E~~lk~~----~~g---------~~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~~ 202 (701)
+.+++++=.+|+++++++.. -.| +++|+++..-.+|++.+++. |++... . ......|..
T Consensus 32 l~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~--D~l~~~----~--~~~~~~r~n 103 (536)
T KOG0500|consen 32 LPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPL--DLLLFK----D--GSASLERLN 103 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcch--hHHhhc----C--CcchHHHHH
Confidence 45699999999999998653 133 36799999999998877764 332221 1 123456778
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005350 203 PYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFE 254 (701)
Q Consensus 203 R~lR~lrli~~~~~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~ 254 (701)
|.+|..|+...+..... +-+.|.+..+..+...++++|-+-|-..|-
T Consensus 104 Rllk~yRl~~F~~rTet-----rT~~Pn~fri~~lv~~~~ilfHWNaClYf~ 150 (536)
T KOG0500|consen 104 RLLKIYRLFEFFDRTET-----RTTYPNAFRISKLVHYCLILFHWNACLYFL 150 (536)
T ss_pred HHHHHHHHHHHHHHhcc-----ccCCchHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 88888888776654432 235677887777888888888877777764
No 55
>PTZ00183 centrin; Provisional
Probab=84.23 E-value=3.4 Score=38.54 Aligned_cols=63 Identities=29% Similarity=0.394 Sum_probs=50.9
Q ss_pred HHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhH
Q 005350 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (701)
Q Consensus 340 ~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 407 (701)
..+..+|+.++.+.+|.++.++........ .+.++.++.+.++...|.+++|.|+.++|..+.
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-----~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKEL-----GETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 346778999999999999988766554433 256788999999999999999999999997654
No 56
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.30 E-value=78 Score=36.14 Aligned_cols=172 Identities=19% Similarity=0.275 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHH--hcC---------chhhhcccccceehhhHHHHHHHHHHHhhhcCCCCccchhhHH
Q 005350 136 LVYEGITLVILIIHTFF---PIT--YEG---------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRI 201 (701)
Q Consensus 136 ~~~e~v~~~if~~E~~l---k~~--~~g---------~~~y~~~~wn~~D~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~ 201 (701)
++.|.+|=+++++++++ |+. -.| .+.|.++..-.+|++.++.. |+ .+..+ +. ...+|+
T Consensus 264 li~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPl--dl-lY~~~----G~-~p~wR~ 335 (815)
T KOG0499|consen 264 LIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPL--DL-LYLFF----GF-NPMWRA 335 (815)
T ss_pred hhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhhH--HH-HHHHh----cc-chhhhh
Confidence 56799999999999986 222 122 36799999999998877664 32 22221 11 122344
Q ss_pred HHHHHHHHHHhccHHHHHHHHH--HHHhHHHHHHHHHHH---HHHHHHHHHHHHHHhccccccccccccHHHH-----HH
Q 005350 202 APYIRVVFFILNIRQLRDTLFV--LAGMLGTYLNVLALG---LLFLLFSSWLAYVIFEDTVQGNMVFTSFGTT-----LY 271 (701)
Q Consensus 202 ~R~lR~lrli~~~~~lr~~~~~--l~~~~~~i~~~~~l~---~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s-----~~ 271 (701)
=|.|+.--+.-.++.+-.++.. +.+.+++..+++..+ .++.+-.| ++|-+|.+ ..-||+-|++ .|
T Consensus 336 ~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~S--ayqglG~~---rWVydg~Gn~YiRCyyf 410 (815)
T KOG0499|consen 336 NRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWAS--AYQGLGTT---RWVYDGEGNEYIRCYYF 410 (815)
T ss_pred hhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHH--hhcccccc---eeEEcCCCCceeeehhh
Confidence 4444333233334444444432 223444444444333 33333333 77777743 2334443333 23
Q ss_pred HHHHHHhcCCCchhhHhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005350 272 QMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQL 327 (701)
Q Consensus 272 ~lf~l~T~~~w~dv~~p~~~~~~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~~~ 327 (701)
+.=.+.|.-|.|+= ....-+-|.....+++.|+.++++|-+=|--...+
T Consensus 411 a~kt~~tiG~~P~P-------~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt 459 (815)
T KOG0499|consen 411 AVKTLITIGGLPEP-------QTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAAT 459 (815)
T ss_pred HHHHHHHhcCCCCc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44455666676661 11222234444455666677777776655544433
No 57
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=82.63 E-value=13 Score=43.73 Aligned_cols=128 Identities=10% Similarity=0.121 Sum_probs=81.2
Q ss_pred HHHHhhcCcccccccCcCcchhHHHHHHHHHHHHHhcCCCCccccchhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 005350 495 ALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFL 574 (701)
Q Consensus 495 ilKi~a~G~~~y~~~~wn~fD~ivv~~s~i~~i~~~~~~~~~~~~~~~~~l~~lr~~RvlRllrli~~~~~lr~l~~tl~ 574 (701)
++.++.. +++|+-+.-|+.|.++...+++...-.+. +.+.-..|..-.+.-++-..+++-++.+++.+...+.-+.
T Consensus 581 ~iQifqq-k~~Y~~~i~Nimew~iyts~li~v~~~~~---~~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~ 656 (929)
T KOG0510|consen 581 CIQIFQQ-KRHYFMDIENIMEWFIYTSALITVYPLFF---EITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLE 656 (929)
T ss_pred HHHHHHH-HHHHHhhhHHHHHHHHHhhhhheeehhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHH
Confidence 3334433 36899999999999988776653321111 1111111222334445566888889999988877776666
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCccccccccccCCCCHHHHHHHHHHHHhccC
Q 005350 575 TLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGN 646 (701)
Q Consensus 575 ~~~~~l~~~~~l~~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~al~tLf~i~t~e~ 646 (701)
.+.++++....+..++++.|++--.-+|+... .|.+.+.|.+..|.++.||+
T Consensus 657 ~I~ktflk~f~vfs~lliaF~lsFYVll~~~~--------------------eFs~p~ms~l~t~~MMiGe~ 708 (929)
T KOG0510|consen 657 VILKTFLKSFMVFSILLIAFGLSFYVLLNKSS--------------------EFSNPFMSKLETFVMMIGEN 708 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhheeeecCCC--------------------CcCCCcchhhhhHHHhhccc
Confidence 66776666666666666666665555555432 37777888888888888874
No 58
>PTZ00184 calmodulin; Provisional
Probab=80.96 E-value=4.8 Score=36.97 Aligned_cols=61 Identities=25% Similarity=0.429 Sum_probs=49.4
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhh
Q 005350 341 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 406 (701)
Q Consensus 341 ~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 406 (701)
.+..+|+..+.+++|.++.++....+... .+..+..+.+.++...|+++++.++.+||...
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKM 145 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHHH-----CCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHH
Confidence 35678899999999999998876665443 25678888999999999999999999998754
No 59
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=80.62 E-value=7.3 Score=34.98 Aligned_cols=63 Identities=22% Similarity=0.262 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhH
Q 005350 336 RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (701)
Q Consensus 336 ~~r~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 407 (701)
...+..+.-+|..++.+++|.++.++...+. ....+.....++...|.+++|.|+.+||.+.+
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~---------l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR---------LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH---------ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4456778899999999999999998754331 11234566789999999999999999997654
No 60
>PTZ00184 calmodulin; Provisional
Probab=80.33 E-value=6.9 Score=35.89 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=50.5
Q ss_pred HHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHH
Q 005350 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 408 (701)
Q Consensus 340 ~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 408 (701)
+.+.++|..++.++.|.++.++....+..+. ...+.++...++...|.+++|.++.++|...+.
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 74 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLG-----QNPTEAELQDMINEVDADGNGTIDFPEFLTLMA 74 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC-----CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHH
Confidence 4567889999999999999998776654442 234567889999999999999999999976543
No 61
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=80.23 E-value=3.5 Score=31.02 Aligned_cols=50 Identities=28% Similarity=0.491 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhH
Q 005350 354 VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (701)
Q Consensus 354 ~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 407 (701)
+|.++.++....+..+ . .++.++++.+.++...|.+++|.|+.+||....
T Consensus 2 ~G~i~~~~~~~~l~~~---g-~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 2 DGKITREEFRRALSKL---G-IKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSEEEHHHHHHHHHHT---T-SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred cCEECHHHHHHHHHHh---C-CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 3556666644443222 1 122889999999999999999999999997654
No 62
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=80.10 E-value=8.7 Score=36.14 Aligned_cols=63 Identities=27% Similarity=0.422 Sum_probs=53.7
Q ss_pred HHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhH
Q 005350 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (701)
Q Consensus 340 ~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 407 (701)
+.+.+||++.+.+.+|.++.........+| .+.++.++...+-.+.|..+++.++.+||-+++
T Consensus 106 eEi~~afrl~D~D~~Gkis~~~lkrvakeL-----genltD~El~eMIeEAd~d~dgevneeEF~~im 168 (172)
T KOG0028|consen 106 EEIKKAFRLFDDDKTGKISQRNLKRVAKEL-----GENLTDEELMEMIEEADRDGDGEVNEEEFIRIM 168 (172)
T ss_pred HHHHHHHHcccccCCCCcCHHHHHHHHHHh-----CccccHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 346779999999999999988877766666 388899999999999999999999999997654
No 63
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=80.07 E-value=12 Score=31.79 Aligned_cols=68 Identities=18% Similarity=0.286 Sum_probs=48.3
Q ss_pred HHHHHHHhhcc-cc-CCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHH
Q 005350 341 TLGKAFNLIDN-YN-VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (701)
Q Consensus 341 ~l~~af~~L~~-~~-~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i 410 (701)
.+.+.|+.-+. ++ ++.++.++....+...... ..+.++++.+.++..+|.+++|+++.+||..+...+
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~l--g~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTI--GSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 34555666654 34 7889998866665321111 245788999999999999999999999997765543
No 64
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=79.94 E-value=7.5 Score=33.22 Aligned_cols=56 Identities=25% Similarity=0.442 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHH-HhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHHH
Q 005350 355 GFLNKEQCIKLFE-ELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (701)
Q Consensus 355 ~~l~~~q~~~~~~-~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i~ 411 (701)
+.+++.+...+++ ++..+... +..++..+.++..+|.++|++++..||..+.-.+.
T Consensus 22 ~tLsk~Elk~Ll~~Elp~~l~~-~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 22 NYLNRDDLQKLMEKEFSEFLKN-QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred CcCCHHHHHHHHHHHhHHHHcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 3566666555432 33333322 33677888999999999999999999987765443
No 65
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=79.51 E-value=3.6 Score=30.98 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=26.6
Q ss_pred CCCChHHHHHHhhhhcccCCcccchhhhhhhHHHH
Q 005350 376 PNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (701)
Q Consensus 376 ~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i 410 (701)
-++++.....+|...|++++|.++.+||.+.+..+
T Consensus 16 I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 16 IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp ----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 46678888899999999999999999998877653
No 66
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=79.41 E-value=7.2 Score=42.14 Aligned_cols=63 Identities=22% Similarity=0.382 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhh
Q 005350 338 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFAD 405 (701)
Q Consensus 338 r~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 405 (701)
++..+.+.|+.++.+.++.++.++.+..++++ . -+++.++.+.++...|++++..|+.+|+.+
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~---g--i~l~de~~~k~~e~~d~~g~~~I~~~e~rd 142 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL---G--IQLSDEKAAKFFEHMDKDGKATIDLEEWRD 142 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHh---C--CccCHHHHHHHHHHhccCCCeeeccHHHHh
Confidence 34557778999999999999988766554444 2 468889999999999999999999998865
No 67
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=77.42 E-value=4.2 Score=39.93 Aligned_cols=68 Identities=31% Similarity=0.568 Sum_probs=52.1
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHHHHhhhccC---CC---CCChHHHHHHhhhhcccCCcccchhhhhhhHH
Q 005350 341 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRT---LP---NISREEFELIFDELDDTHDFKINLDEFADLCN 408 (701)
Q Consensus 341 ~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~---~~---~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 408 (701)
++.-+|++-+.+++|.++++++....+.+-+... .| .-.++..+.+|..+|.++||.++.+||.+-+.
T Consensus 101 kl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 101 KLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 4456799999999999999998877766544322 12 22346678999999999999999999977654
No 68
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=76.65 E-value=15 Score=31.03 Aligned_cols=58 Identities=22% Similarity=0.409 Sum_probs=40.7
Q ss_pred cCCCCCHHHHHHHHHH-hhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHHH
Q 005350 353 NVGFLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 411 (701)
Q Consensus 353 ~~~~l~~~q~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i~ 411 (701)
.++.++.++...++.. +....+ ...++.+...++...|.+++|.++.+||.+++..+.
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~t-~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFLK-KEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhhc-cCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3567888877666542 211100 123478899999999999999999999988766543
No 69
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=75.77 E-value=5.7 Score=38.87 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=48.2
Q ss_pred HHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCC---CChHHHHHHhhhhcccCCcccchhhhhhhH
Q 005350 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPN---ISREEFELIFDELDDTHDFKINLDEFADLC 407 (701)
Q Consensus 340 ~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~---~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 407 (701)
++++=||++.+.+++|+++.++....+..+-.-. ... ...+-.+.++.+.|.++||+|+.+||.+..
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~-~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGEN-DDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccC-CcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 5788899999999999999998766655442211 111 112334567889999999999999997653
No 70
>PTZ00183 centrin; Provisional
Probab=75.39 E-value=13 Score=34.56 Aligned_cols=64 Identities=22% Similarity=0.409 Sum_probs=50.9
Q ss_pred HHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHH
Q 005350 340 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 408 (701)
Q Consensus 340 ~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 408 (701)
+.+.++|..++.+.+|.++.++....++.+. .+.+......++...|.++++.++.+||...+.
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g-----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLG-----FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 4577889999999999999998766655441 234667888999999999999999999977544
No 71
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=74.67 E-value=14 Score=35.17 Aligned_cols=66 Identities=24% Similarity=0.424 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHH
Q 005350 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (701)
Q Consensus 339 ~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i 410 (701)
-+.+++||++++.++.|.++.......++.+. ...+......++.+.|. +++.++..+|...+...
T Consensus 19 i~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg-----~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 19 IQELKEAFQLFDRDSDGLIDRNELGKILRSLG-----FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK 84 (160)
T ss_pred HHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcC-----CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH
Confidence 35678899999999999999988666554331 24567788889999998 88889988887766543
No 72
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=74.03 E-value=12 Score=32.79 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHH
Q 005350 338 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (701)
Q Consensus 338 r~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i 410 (701)
+++.....|+.++. +++.++.++....+. ..+++.+....+|.-.|.+++|+++.+||.--...+
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~-------~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFM-------KSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHH-------HTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHH-------HcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 34556778888874 578899888665533 256788999999999999999999999997544433
No 73
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=72.65 E-value=8 Score=47.11 Aligned_cols=120 Identities=15% Similarity=0.220 Sum_probs=77.9
Q ss_pred HHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------ccccccccccHHHHH-HHHHHHHhc-C
Q 005350 210 FILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED-------TVQGNMVFTSFGTTL-YQMFVLFTT-S 280 (701)
Q Consensus 210 li~~~~~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~-------~~~~~~~F~~~~~s~-~~lf~l~T~-~ 280 (701)
+..-++.+|.++.++...-+.+.-...++.+++++|.++++++|+. .+++....|+..+.. +-|++-+-. -
T Consensus 4798 iamgfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~pdmkcddmltcylfhmyvgvragg 4877 (5019)
T KOG2243|consen 4798 IAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMLTCYLFHMYVGVRAGG 4877 (5019)
T ss_pred HHHhHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCCCccchhhHHHHhhheeeeeecCC
Confidence 3335567777777766666666666778888899999999999972 234456677776653 344443322 2
Q ss_pred CCchh-hHhhhccCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005350 281 NNPDV-WIPAYKASRWY-CLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAK 329 (701)
Q Consensus 281 ~w~dv-~~p~~~~~~~~-~ifFi~~~~l~~~~~lnLfiaVi~~~f~~~~~~ 329 (701)
|-+|- --|+-.....+ .+|=|.|+++.-.+++.+.-+.|++.|-+...+
T Consensus 4878 gigdeiedpagd~yeiyriifditffffvivillaiiqgliidafgelrdq 4928 (5019)
T KOG2243|consen 4878 GIGDEIEDPAGDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQ 4928 (5019)
T ss_pred cccccccCCCCCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHhH
Confidence 33332 23444333333 346677777777788899999999999876544
No 74
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=71.34 E-value=3.4 Score=26.06 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=19.6
Q ss_pred HHHhhhhcccCCcccchhhhhhh
Q 005350 384 ELIFDELDDTHDFKINLDEFADL 406 (701)
Q Consensus 384 ~~l~~~~d~~~~~~i~~~ef~~~ 406 (701)
+..|...|.+++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 35788999999999999998764
No 75
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=69.19 E-value=4 Score=27.00 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=21.4
Q ss_pred HHHHhhhhcccCCcccchhhhhhhHH
Q 005350 383 FELIFDELDDTHDFKINLDEFADLCN 408 (701)
Q Consensus 383 ~~~l~~~~d~~~~~~i~~~ef~~~~~ 408 (701)
.+.+|...|++++|.|+.+||...+.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 45788999999999999999987664
No 76
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=66.01 E-value=34 Score=36.00 Aligned_cols=88 Identities=20% Similarity=0.348 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHhcCCCchhhH----hhhccCcchHHHHHHH
Q 005350 228 LGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWI----PAYKASRWYCLFFVLY 303 (701)
Q Consensus 228 ~~~i~~~~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~l~T~~~w~dv~~----p~~~~~~~~~ifFi~~ 303 (701)
-++..+++++++..-++-...|..+|..- ++..+||++ +-.|+.+||-|.+|... .++...+.|..+=..|
T Consensus 154 ~~S~~~l~~i~~~~~~~~i~~gaa~fs~~-E~Wsyfds~----YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~f 228 (350)
T KOG4404|consen 154 DVSVYNLVLILFTACILLICCGAAMFSSV-EGWSYFDSY----YYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVF 228 (350)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHhhcc-cCcchhhhh----heeeeeeeeccccchhhhcchhhhhCCCceehHhHHH
Confidence 34566666665555444444577777754 466777766 45566779999999642 2334444454444445
Q ss_pred HHHHH---HHHHHHHHHHHH
Q 005350 304 VLIGV---YFVTNLILAVVY 320 (701)
Q Consensus 304 ~~l~~---~~~lnLfiaVi~ 320 (701)
+++|. +-++|+.+=.+.
T Consensus 229 IL~Gl~vi~a~~NllvLrf~ 248 (350)
T KOG4404|consen 229 ILLGLCVIYALLNLLVLRFM 248 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55443 445555544333
No 77
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=65.57 E-value=19 Score=39.01 Aligned_cols=67 Identities=25% Similarity=0.405 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhh
Q 005350 335 DRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFAD 405 (701)
Q Consensus 335 ~~~r~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 405 (701)
.++|+...+..|+.++.++.+.++..|..+.+..+.. |+...+-...+++..|.+.++.+|-.||.+
T Consensus 9 ~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~----~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~ 75 (463)
T KOG0036|consen 9 DEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDH----PKPNYEAAKMLFSAMDANRDGRVDYSEFKR 75 (463)
T ss_pred cHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCC----CCCchHHHHHHHHhcccCcCCcccHHHHHH
Confidence 3455666778899999999999998886655444432 444445555566666666666666665543
No 78
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=65.55 E-value=55 Score=35.21 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=44.1
Q ss_pred cccccHHHHHHHHHHHHhcCCCchhhHhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005350 261 MVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKS 325 (701)
Q Consensus 261 ~~F~~~~~s~~~lf~l~T~~~w~dv~~p~~~~~~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~ 325 (701)
.+.++|.++++--.+..||-||+.. +| ...-..+.+.+..-.+.+.++..+.+|+++..|+.
T Consensus 80 ~~~~~f~~aF~FSveT~tTIGYG~~-~~--~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 80 SNVNSFTSAFLFSVETQTTIGYGSR-YP--TPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp CT-TTHHHHHHHHHHHHTT---SSS-EB---CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ecccchhhheeEEEEEEEEeccCCc-cc--CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999999999999999873 11 23334566777778888888899999999988863
No 79
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=59.29 E-value=57 Score=35.74 Aligned_cols=71 Identities=25% Similarity=0.335 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHH
Q 005350 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 410 (701)
Q Consensus 339 ~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i 410 (701)
|..++..|+.++.+..|+++-++....-+-+.++- ...++.+++..+-..+|-++||+||..||.+-....
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~-~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHM-NGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhc-CCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 45688889999999999999877555444444433 256788999999999999999999999997655443
No 80
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=58.58 E-value=1.6e+02 Score=33.72 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCCCchhhHhhhccCcchHHHHHHHHHHHHHHHHHHH
Q 005350 267 GTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLI 315 (701)
Q Consensus 267 ~~s~~~lf~l~T~~~w~dv~~p~~~~~~~~~ifFi~~~~l~~~~~lnLf 315 (701)
-.|++--..++|+.|++.+ .|..+.- -+|-+..+++|+.+--.+|
T Consensus 425 issLYfTMt~mttvGFGNi-A~~TD~E---KiF~v~mMii~aLLYAtIF 469 (971)
T KOG0501|consen 425 ISSLYFTMTCMTTVGFGNI-APNTDNE---KIFGVCMMIIGALLYATIF 469 (971)
T ss_pred hhhhhhhhhhhhccccccc-CCCccHH---HHHHHHHHHHHHHHHHHHH
Confidence 3455555567788888875 3333333 3566666666655444443
No 81
>PF14658 EF-hand_9: EF-hand domain
Probab=53.49 E-value=32 Score=27.48 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=44.6
Q ss_pred HHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCC-cccchhhhhhh
Q 005350 345 AFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHD-FKINLDEFADL 406 (701)
Q Consensus 345 af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~-~~i~~~ef~~~ 406 (701)
+|.+-+.++.|.+.-.+...+++.+.. +.-++.+.+.+..++|+++. +.++.+.|...
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~----~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~i 61 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTG----RSPEESELQDLINELDPEGRDGSVNFDTFLAI 61 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcC----CCCcHHHHHHHHHHhCCCCCCceEeHHHHHHH
Confidence 577788888888887776666665532 34567788999999999987 99999988654
No 82
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=53.32 E-value=17 Score=40.81 Aligned_cols=46 Identities=11% Similarity=0.275 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccc-ccccCcCcchhHHHHHHH
Q 005350 478 VWQEVEFVFGWIYVLEMALKIYSYGFEN-YWRDGQNRFDFLVTWVIV 523 (701)
Q Consensus 478 ~~~~i~~~f~~iF~~E~ilKi~a~G~~~-y~~~~wn~fD~ivv~~s~ 523 (701)
.-+.+|..|.++|.+-..+|.+|..-+- |+-.-..+.|++.+..++
T Consensus 163 ~tqqidlafnifflvyffirfiaasdklwf~lemys~vdfftippsf 209 (1103)
T KOG1420|consen 163 FTQQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSF 209 (1103)
T ss_pred hHHHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchh
Confidence 3467999999999999999999986332 344455567777555444
No 83
>PLN02964 phosphatidylserine decarboxylase
Probab=53.15 E-value=37 Score=39.71 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=50.5
Q ss_pred HHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHH
Q 005350 342 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 409 (701)
Q Consensus 342 l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 409 (701)
++++|+..+.++++.++.++...++..+. ...++++.+.+|...|++++|.|+.+|+.++...
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg-----~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFG-----NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhc-----cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 56677888888999999988776665442 2356788999999999999999999999876543
No 84
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=52.35 E-value=72 Score=35.09 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHH
Q 005350 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 409 (701)
Q Consensus 339 ~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~ 409 (701)
+..++.+|+..+.+++|.++.++... .+.+|..+|.+++|.++.+||.+.+..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 45678889999999999999887410 356899999999999999999887653
No 85
>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex
Probab=49.96 E-value=4 Score=41.60 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=21.1
Q ss_pred cHHHHHHHhcccchhHHHHHHHHH
Q 005350 432 SPFSEKLKAFIRSTKFGYMISIIL 455 (701)
Q Consensus 432 s~~r~~~~~iv~~~~f~~~i~~~I 455 (701)
..+|+.|+++|+|+||+.+|.++|
T Consensus 216 ~~~R~~c~~iVeh~~FEtfIifmI 239 (239)
T PF06512_consen 216 WNLRKTCYRIVEHKWFETFIIFMI 239 (239)
T ss_pred HHHHhhheeeecccchhheeeeeC
Confidence 457999999999999999988765
No 86
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=48.95 E-value=67 Score=35.85 Aligned_cols=66 Identities=23% Similarity=0.517 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHh----hcC---------cccccccCcCcchhHHHH
Q 005350 455 LIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIY----SYG---------FENYWRDGQNRFDFLVTW 520 (701)
Q Consensus 455 Illn~i~l~~~~~~~~~~~~~~~~~~~i~~~f~~iF~~E~ilKi~----a~G---------~~~y~~~~wn~fD~ivv~ 520 (701)
++-|.+.+++-...++-...+...|-.+|+.+=.+|+++++++.- -.| ++.|+++.--.+|.+.++
T Consensus 7 vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~li 85 (536)
T KOG0500|consen 7 VLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLI 85 (536)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhc
Confidence 344555555422222223345567888999999999999999864 234 367777777777776543
No 87
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=48.81 E-value=60 Score=32.29 Aligned_cols=95 Identities=16% Similarity=0.249 Sum_probs=51.1
Q ss_pred hhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHHHhhhcccCCccccccCC
Q 005350 348 LIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLP 427 (701)
Q Consensus 348 ~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i~~~~~k~~~~~~~~~~p 427 (701)
+++.+..+.++-++...+.+.+++.+ .+|...|+++.++|+..|+.+-...+-... + |
T Consensus 102 mfd~~~~G~i~f~EF~~Lw~~i~~Wr-----------~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~L----s-------p 159 (221)
T KOG0037|consen 102 MFDRDNSGTIGFKEFKALWKYINQWR-----------NVFRTYDRDRSGTIDSSELRQALTQLGYRL----S-------P 159 (221)
T ss_pred HhcCCCCCccCHHHHHHHHHHHHHHH-----------HHHHhcccCCCCcccHHHHHHHHHHcCcCC----C-------H
Confidence 44555556666666555555554433 566777888888888888765443322111 0 1
Q ss_pred cccccHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 005350 428 SIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIV 464 (701)
Q Consensus 428 ~~~~s~~r~~~~~iv~~~~f~~~i~~~Illn~i~l~~ 464 (701)
..++.-.+|.....-..-.|+.++.+++.+-..+=+.
T Consensus 160 q~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~F 196 (221)
T KOG0037|consen 160 QFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAF 196 (221)
T ss_pred HHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHH
Confidence 1111122333333333345888888887776654443
No 88
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=47.46 E-value=72 Score=30.04 Aligned_cols=69 Identities=29% Similarity=0.424 Sum_probs=43.5
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHHHHhhhccC---------------------------CCCCC-hHHHHHHhhhhcc
Q 005350 341 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRT---------------------------LPNIS-REEFELIFDELDD 392 (701)
Q Consensus 341 ~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~---------------------------~~~~~-~~~~~~l~~~~d~ 392 (701)
.+.+||.+++...+|+++++.....+..+.+..+ +.... ++..-.-|...|+
T Consensus 33 EfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~ 112 (171)
T KOG0031|consen 33 EFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDD 112 (171)
T ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCc
Confidence 4678999999999999999886666555543210 01111 1222344556677
Q ss_pred cCCcccchhhhhhhHHH
Q 005350 393 THDFKINLDEFADLCNA 409 (701)
Q Consensus 393 ~~~~~i~~~ef~~~~~~ 409 (701)
.+.|+|+.+.+.+++..
T Consensus 113 ~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 113 EGSGKIDEDYLRELLTT 129 (171)
T ss_pred cCCCccCHHHHHHHHHH
Confidence 77888888777666543
No 89
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=46.96 E-value=39 Score=38.22 Aligned_cols=72 Identities=18% Similarity=0.334 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccccccch-hhhHHHHHHHHHHHHHHHHHHHHHhhc--Cc------------cccccc
Q 005350 445 TKFGYMISIILIVNLVAVIVETTLDIQESS-LQSVWQEVEFVFGWIYVLEMALKIYSY--GF------------ENYWRD 509 (701)
Q Consensus 445 ~~f~~~i~~~Illn~i~l~~~~~~~~~~~~-~~~~~~~i~~~f~~iF~~E~ilKi~a~--G~------------~~y~~~ 509 (701)
..|+|.|.++..-..+.+-..-.. .+.. ....|..+|-+.-++|.++++|..-.- || .+|++
T Consensus 218 t~WDWvIL~LTFYTAimVPyNvaF--Knk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlK- 294 (971)
T KOG0501|consen 218 TIWDWVILILTFYTAIMVPYNVAF--KNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLK- 294 (971)
T ss_pred hHHHHHHHHHHHHHHheeeeeeee--cccccCceeEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHH-
Confidence 347777666555443332211110 0111 122445577777888999999986543 43 25655
Q ss_pred CcCcchhHHH
Q 005350 510 GQNRFDFLVT 519 (701)
Q Consensus 510 ~wn~fD~ivv 519 (701)
.|-++|++-.
T Consensus 295 sWFvIDLLSC 304 (971)
T KOG0501|consen 295 SWFVIDLLSC 304 (971)
T ss_pred HHHHHHHHhc
Confidence 4767887644
No 90
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=43.91 E-value=5.9e+02 Score=30.49 Aligned_cols=78 Identities=9% Similarity=0.156 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCccccccccccCCCCHHHHHHHHHHHH
Q 005350 563 VQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLL 642 (701)
Q Consensus 563 ~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~ifAiiG~~lF~g~~~~~n~~~~~~~~~~~~y~~~nF~~f~~al~tLf~i~ 642 (701)
...+-.++.++ ++..++.++.+..++++-||..-.-+|.+-....++..+. ...+.-..-.++|+.++++||+.+
T Consensus 528 ~Gpf~~MIykm--I~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~---~~~~~m~~~~ds~~~~~l~lf~ft 602 (782)
T KOG3676|consen 528 TGPFVIMIYKM--IFGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKN---VESNPMCNPYDSFSTFLLTLFEFT 602 (782)
T ss_pred cccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc---ccccccCChhhHHHHHHHHHHHHh
Confidence 33444444443 3567888999999999999999999998865442211100 001111234566899999999987
Q ss_pred hcc
Q 005350 643 VMG 645 (701)
Q Consensus 643 t~e 645 (701)
.+-
T Consensus 603 ig~ 605 (782)
T KOG3676|consen 603 IGM 605 (782)
T ss_pred hhh
Confidence 753
No 91
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=41.56 E-value=69 Score=35.95 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHH
Q 005350 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 408 (701)
Q Consensus 339 ~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 408 (701)
.+.+.++|..++ ++.|+++..+-...+.+.+... .....++.+.+..+.+.+.+++++.++|..++-
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~--g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL--GYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc--cchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 345778899999 8899999988777766654332 334567888888899999999999999988654
No 92
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=40.60 E-value=1e+02 Score=28.99 Aligned_cols=63 Identities=14% Similarity=0.254 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhh
Q 005350 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 406 (701)
Q Consensus 339 ~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 406 (701)
++.+..||...++++.|.++++....++... .-+.++++++.++...-.+..|.++..+|...
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~-----gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ 162 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTM-----GDRFTDEEVDEMYREAPIDKKGNFDYKAFTYI 162 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHh-----cccCCHHHHHHHHHhCCcccCCceeHHHHHHH
Confidence 3457789999999999999988766554432 24678899999999888888888887777654
No 93
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=37.90 E-value=86 Score=30.87 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=45.6
Q ss_pred HHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhHHHHHh
Q 005350 343 GKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 412 (701)
Q Consensus 343 ~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i~~ 412 (701)
+..|+..+..++|.++-++....+..+. +....++....|..+|.+++|.|+++|+.++.+++-.
T Consensus 67 ~~vF~~fD~~~dg~i~F~Efi~als~~~-----rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~ 131 (193)
T KOG0044|consen 67 ELVFRTFDKNKDGTIDFLEFICALSLTS-----RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQ 131 (193)
T ss_pred HHHHHHhcccCCCCcCHHHHHHHHHHHc-----CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHH
Confidence 4466777888888888777444333331 3334455667788999999999999999888776543
No 94
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=36.05 E-value=1.2e+02 Score=33.24 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccC----------------------------CCC------------
Q 005350 338 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRT----------------------------LPN------------ 377 (701)
Q Consensus 338 r~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~----------------------------~~~------------ 377 (701)
++.-+.++|++.+.++.|.++..+|...++.+-+..- ...
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 3456888899999888888888777555544333210 000
Q ss_pred --CChHHHHHHhhhhcccCCcccchhhhhhhHHHHHhhhc
Q 005350 378 --ISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQ 415 (701)
Q Consensus 378 --~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~i~~~~~ 415 (701)
..++..+.+|..+|.++.|.|+.+||...++.+.....
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~ 581 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMN 581 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcC
Confidence 01234467889999999999999999988887765543
No 95
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=33.38 E-value=1.5e+02 Score=29.22 Aligned_cols=76 Identities=24% Similarity=0.409 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCccc
Q 005350 319 VYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKI 398 (701)
Q Consensus 319 i~~~f~~~~~~~~~~~~~~r~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i 398 (701)
+|..|.+...++.+. ....|+..+++.+|+++-.+...+++++. .|+- .=-...+-.+.|.+.++++
T Consensus 86 ~yteF~eFsrkqIk~--------~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg----apQT-HL~lK~mikeVded~dgkl 152 (244)
T KOG0041|consen 86 VYTEFSEFSRKQIKD--------AESMFKQYDEDRDGFIDLMELKRMMEKLG----APQT-HLGLKNMIKEVDEDFDGKL 152 (244)
T ss_pred hhhhhhHHHHHHHHH--------HHHHHHHhcccccccccHHHHHHHHHHhC----Cchh-hHHHHHHHHHhhcccccch
Confidence 345565555444332 45678899999999999988776666553 2331 1123456678889999999
Q ss_pred chhhhhhhH
Q 005350 399 NLDEFADLC 407 (701)
Q Consensus 399 ~~~ef~~~~ 407 (701)
+..||.-+.
T Consensus 153 SfreflLIf 161 (244)
T KOG0041|consen 153 SFREFLLIF 161 (244)
T ss_pred hHHHHHHHH
Confidence 988885443
No 96
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=29.75 E-value=38 Score=20.27 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=18.2
Q ss_pred HHHhhhhcccCCcccchhhhhhhH
Q 005350 384 ELIFDELDDTHDFKINLDEFADLC 407 (701)
Q Consensus 384 ~~l~~~~d~~~~~~i~~~ef~~~~ 407 (701)
+.++...|.++++.++.++|....
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHH
Confidence 456777888888889888876654
No 97
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=28.23 E-value=3.3e+02 Score=22.18 Aligned_cols=14 Identities=29% Similarity=0.320 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 005350 311 VTNLILAVVYDSFK 324 (701)
Q Consensus 311 ~lnLfiaVi~~~f~ 324 (701)
+..+|+.-.+=++.
T Consensus 30 LtPlfiisa~lSwk 43 (74)
T PF15086_consen 30 LTPLFIISAVLSWK 43 (74)
T ss_pred HhHHHHHHHHHHHH
Confidence 44455444444454
No 98
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=26.27 E-value=2.6e+02 Score=26.59 Aligned_cols=66 Identities=20% Similarity=0.314 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHHHHHHhhhhcccCCcccchhhhhhhH
Q 005350 337 MRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 407 (701)
Q Consensus 337 ~r~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 407 (701)
..++.+..+|...+.+..+.++.++.+.-.+.+ . -...+.++..+..+.|+.+.|+|+.++|.+..
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmral---G--FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~m 95 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRAL---G--FEPKKEEILKLLADVDKEGSGKITFEDFRRVM 95 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHHc---C--CCcchHHHHHHHHhhhhccCceechHHHHHHH
Confidence 345678889999999999999987754332222 1 22345667778888888889999988887653
No 99
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=24.78 E-value=55 Score=25.37 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=23.2
Q ss_pred HHHHhhhhcccCCcccchhhhhhhHHHH
Q 005350 383 FELIFDELDDTHDFKINLDEFADLCNAI 410 (701)
Q Consensus 383 ~~~l~~~~d~~~~~~i~~~ef~~~~~~i 410 (701)
.+.+|..+|.+++|.|+.+|+.+.+..+
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~ 29 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHL 29 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHh
Confidence 3568899999999999999998776543
No 100
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=24.50 E-value=6.6e+02 Score=25.55 Aligned_cols=91 Identities=26% Similarity=0.311 Sum_probs=55.3
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHhcCCCch
Q 005350 205 IRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPD 284 (701)
Q Consensus 205 lR~lrli~~~~~lr~~~~~l~~~~~~i~~~~~l~~~~~~~fai~g~~lF~~~~~~~~~F~~~~~s~~~lf~l~T~~~w~d 284 (701)
.|-++++++ +++|+.+ .+|-+.|+.+...++..+++.. +.|-|
T Consensus 13 ~~g~~l~~r-pglrrfv-----ilpLl~ni~L~~gl~~~~~~~~-------------------------------~~wid 55 (250)
T COG2981 13 LRGWKLITR-PGLRRFV-----ILPLLLNILLWGGLFWLLFSQA-------------------------------LPWID 55 (250)
T ss_pred HHhhHHhhc-chHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHH
Confidence 455666666 7777766 4677777776666665555411 12333
Q ss_pred hhHhhhc-----cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005350 285 VWIPAYK-----ASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVS 332 (701)
Q Consensus 285 v~~p~~~-----~~~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~~~~~~~~ 332 (701)
..+|... -+...+++.++-+.+...++++...++|-.=|.....++++
T Consensus 56 ~Lm~~iPdWl~wLs~v~~~la~L~lll~~~~lfs~v~~~IAapFng~lAEkvE 108 (250)
T COG2981 56 TLMPGIPDWLGWLSYLLWILAVLLLLLVFAFLFSTVANLIAAPFNGLLAEKVE 108 (250)
T ss_pred HHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3333211 12234566777777777888888888888888776665443
No 101
>PRK10537 voltage-gated potassium channel; Provisional
Probab=24.09 E-value=3.7e+02 Score=29.64 Aligned_cols=54 Identities=15% Similarity=0.229 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005350 546 RYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGI 605 (701)
Q Consensus 546 ~~lr~~RvlRllrli~~~~~lr~l~~tl~~~~~~l~~~~~l~~~~~~ifAiiG~~lF~g~ 605 (701)
+.++.+-++++..++...+.+.....++. .+ +..+.+....+|+++|...+++.
T Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~l--~~~~~~~~l~~~~~~g~~~~~~~ 161 (393)
T PRK10537 108 KFLIGYCIVLLVALLIYRRDFDRSSLAAG----TL--FAVISITSLLFYSTFGALYLGDG 161 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHccc
Confidence 44555566666666665555554422222 12 22223334557888888877763
No 102
>PLN02964 phosphatidylserine decarboxylase
Probab=24.07 E-value=1.9e+02 Score=34.11 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhccccCCCCCHHHHHHHHHHhhhccCCCCCChHH---HHHHhhhhcccCCcccchhhhhhhHHHH
Q 005350 339 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREE---FELIFDELDDTHDFKINLDEFADLCNAI 410 (701)
Q Consensus 339 ~~~l~~af~~L~~~~~~~l~~~q~~~~~~~l~~~~~~~~~~~~~---~~~l~~~~d~~~~~~i~~~ef~~~~~~i 410 (701)
.+.+.++|.+++.++++.+ ....++.+.. . ..++.+ .+.++...|.+++|.++.+||..++..+
T Consensus 142 i~elkeaF~lfD~dgdG~i----Lg~ilrslG~--~--~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV----VGSIFVSCSI--E--DPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC----HHHHHHHhCC--C--CCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 3567789999999988875 2222333311 1 223333 6788999999999999999998777643
No 103
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=20.54 E-value=28 Score=38.84 Aligned_cols=45 Identities=27% Similarity=0.522 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCCchhhHhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005350 269 TLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKS 325 (701)
Q Consensus 269 s~~~lf~l~T~~~w~dv~~p~~~~~~~~~ifFi~~~~l~~~~~lnLfiaVi~~~f~~ 325 (701)
|++-+.+..+|.|++| |+|.+-.+.. +.++. +-+-++++-.+|.+
T Consensus 221 s~y~v~vtfstvgygd-~~pd~w~sql---~~vi~--------icval~~ip~q~~~ 265 (1087)
T KOG3193|consen 221 SFYFVMVTFSTVGYGD-WYPDYWASQL---CVVIL--------ICVALGLIPKQLDE 265 (1087)
T ss_pred eEEEEEEEEeeccccc-cccccchhhH---HHHHH--------HHHHHhccHHHHHH
Confidence 3344556678999999 7887755542 33332 23344556666654
No 104
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=20.46 E-value=1e+02 Score=27.38 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=10.0
Q ss_pred HHHHhhhhcccCCcccchhhh
Q 005350 383 FELIFDELDDTHDFKINLDEF 403 (701)
Q Consensus 383 ~~~l~~~~d~~~~~~i~~~ef 403 (701)
.+..+..=|.++|+.|+.+|+
T Consensus 90 ~~~F~~~CD~n~d~~Is~~EW 110 (113)
T PF10591_consen 90 ARPFFRSCDVNKDGKISLDEW 110 (113)
T ss_dssp HHHHHHHH-TT-SSSEEHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHH
Confidence 344555555555555555554
Done!