BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>005351
MRNQTKSLKLKHFLLILFCILNLLSPRCVVGVQILSKSKLEKCEKRTDSDNLNCTTKIVL
NMAVPSGSSGGEASIVAEVVEVEENSTQKMRTVRIPPVLTVNKTASYAVYELTYIRDVPY
KPQEFYMKTRKCEPDAGADVVKICERQPICCPCGPQRRIPSSCGNVFDKLLKGKANTAHC
LRFPGDWFHVFGIGQRSIGFSVRIEVKTGSKVSEVTVGPENKTATSADNFLKVNLIGDFV
GYTNIPSFEEFYLVIPRQGGPGQPQDLGGNFSMWMLLERTRFTLDGLECNKIGVSYEAFN
GQPSFCSSPFWSCLHNQLWNYREADQNRINRNQLPLYGVEGRFERMNQHPNAGSHSFSIG
VTEVLNSNLLIELRADDIEYVYQRSPGKIISVIIPTFEALTQFGVATITTQNTGEVEASY
SLTFDCSTGVTLMEEQYFIIKPKETSIRSFKIYPTTNQAAKYTCSAILKDSDFSEVDRAE
CQFSTMATVLDNGSQITPFQPPKSSINDFFESIESIGKKLWEGLRDFITGKACRRKCSSF
FDFSCHIQYICLSWLVLFGLVLAIFPTVLVLLWLLHQKGLFDPLYDWWDDHFQSDNQRIR
DFRSRRIDVDHPHVHVRKHHKQEGRHHKLEARRRRCGIHSDHKHKHSDRDTDYYYYLHHV
QKDKHKHGRSKNSSVMQQLYLDTGKNDHIGHHRRRKFRESS

High Scoring Gene Products

Symbol, full name Information P value
HAP2
AT4G11720
protein from Arabidopsis thaliana 4.0e-248

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  005351
        (701 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2139772 - symbol:HAP2 "AT4G11720" species:3702...  2390  4.0e-248  1


>TAIR|locus:2139772 [details] [associations]
            symbol:HAP2 "AT4G11720" species:3702 "Arabidopsis
            thaliana" [GO:0005783 "endoplasmic reticulum" evidence=IDA]
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0048235 "pollen
            sperm cell differentiation" evidence=IEP] GO:GO:0005783
            GO:GO:0016021 GO:GO:0005886 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0005789 GO:GO:0007338 EMBL:AL161532 GO:GO:0048235
            EMBL:AL049500 EMBL:DQ022375 EMBL:DQ022676 EMBL:AB206811
            IPI:IPI00545577 IPI:IPI00852274 PIR:T04219 RefSeq:NP_192909.2
            UniGene:At.54282 PRIDE:F4JP36 EnsemblPlants:AT4G11720.1
            GeneID:826777 KEGG:ath:AT4G11720 TAIR:At4g11720 eggNOG:NOG77705
            HOGENOM:HOG000084108 InParanoid:Q1AP31 OMA:HVFGIGQ
            InterPro:IPR018928 Pfam:PF10699 Uniprot:F4JP36
        Length = 705

 Score = 2390 (846.4 bits), Expect = 4.0e-248, P = 4.0e-248
 Identities = 455/692 (65%), Positives = 535/692 (77%)

Query:    29 VVGVQILSKSKLEKCEKRTDSDNLNCTTKIVLNMAVPSGSSGGEASIXXXXXXXXXNSTQ 88
             V G+QILSKSKLEKCEK +DS NLNC+TKIVLN+AVPSGSSGGEASI         NS+ 
Sbjct:    22 VDGIQILSKSKLEKCEKTSDSGNLNCSTKIVLNLAVPSGSSGGEASIVAEIVEVEDNSSS 81

Query:    89 KMRTVRIPPVLTVNKTASYAVYELTYIRDVPYKPQEFYMKTRKCEPDAGADVVKICER-- 146
              M+TVRIPPV+TVNK+A+YA+Y+LTYIRDVPYKPQE+++ TRKCE DAG D+V+ICER  
Sbjct:    82 NMQTVRIPPVITVNKSAAYALYDLTYIRDVPYKPQEYHVTTRKCEHDAGPDIVQICERLR 141

Query:   147 ----------QPICCPCGPQRRIPSSCGNVFDKLLKGKANTAHCLRFPGDWFHVFGIGQR 196
                       QPICCPCGPQRR+PSSCG++FDK++KGKANTAHCLRFPGDWFHVFGIGQR
Sbjct:   142 DEKGNVLEQTQPICCPCGPQRRMPSSCGDIFDKMIKGKANTAHCLRFPGDWFHVFGIGQR 201

Query:   197 SIGFSVRIEVKTGSKVSEVTVGPENKTATSADNFLKVNLIGDFVGYTNIPSFEEFYLVIX 256
             S+GFSVR+E+KTG++VSEV +GPEN+TAT+ DNFLKVNLIGDF GYT+IPSFE+FYLVI 
Sbjct:   202 SLGFSVRVELKTGTRVSEVIIGPENRTATANDNFLKVNLIGDFGGYTSIPSFEDFYLVIP 261

Query:   257 XXXXXXXX-XXXXXNFSMWMLLERTRFTLDGLECNKIGVSYEAFNGQPSFCSSPFWSCLH 315
                           N+SMWMLLER RFTLDGLECNKIGV YEAFN QP+FCSSP+WSCLH
Sbjct:   262 REAAEAGQPGSLGANYSMWMLLERVRFTLDGLECNKIGVGYEAFNTQPNFCSSPYWSCLH 321

Query:   316 NQLWNYREADQNRINRNQLPLYGVEGRFERMNQHPNAGSHSFSIGVTEVLNSNLLIELRA 375
             NQLWN+RE+D NRI+R+QLPLYG+EGRFER+NQHPNAG HSFSIGVTE LN+NL+IELRA
Sbjct:   322 NQLWNFRESDINRIDRHQLPLYGLEGRFERINQHPNAGPHSFSIGVTETLNTNLMIELRA 381

Query:   376 DDIEYVYQRSPGKIISVIIPTFEALTQFGVATITTQNTGEVEASYSLTFDCSTGVTLMEE 435
             DDIEYV+QRSPGKII++ IPTFEALTQFGVA +  +NTGEVEASYSLTFDCS GV  +EE
Sbjct:   382 DDIEYVFQRSPGKIINIAIPTFEALTQFGVAAVIIKNTGEVEASYSLTFDCSKGVAFVEE 441

Query:   436 QYFIIKPKETSIRSFKIYPTTNQAAKYTCSAILKDSDFSEVDRAECQFSTMATVLDNGSQ 495
             Q+FIIKPK  + RSFK+YPT +QAAKY C+AILKDS FSEVDRAECQFST ATVLDNG+Q
Sbjct:   442 QFFIIKPKAVTTRSFKLYPTKDQAAKYICTAILKDSQFSEVDRAECQFSTTATVLDNGTQ 501

Query:   496 IT-PFQPPKSSINDFFESIESIGKKLWEGLRDFITGKACRRKCSSFFDFSCHIQYICLSW 554
             +T PFQ P++    FF+SI  +  K+  GL DFITG  CR KCSSFFDFSCHIQY+CLSW
Sbjct:   502 VTNPFQIPETQPKGFFDSIRILWTKIINGLVDFITGDTCRNKCSSFFDFSCHIQYVCLSW 561

Query:   555 LVLFGLVLAIFPTVLVLLWLLHQKGLFDPLYDWWDDHFQSDNQRIRDFRSRRIDVDHPHV 614
             +V+FGL+LA+FP   +LLWLLHQKGLFDP YDWW+DHF  D+ R R   SR  DV + H 
Sbjct:   562 MVMFGLLLALFPITCLLLWLLHQKGLFDPCYDWWEDHFDLDHHR-RLLPSRA-DVVNRHH 619

Query:   615 HVRKHHKQEGRHHKLEARRRRC-----GIXXXXXXXXXXRDTDYYYYLHHVQKD-KHKHG 668
             H  KH      H +   R +        +           D+ YY+ LH V KD K K  
Sbjct:   620 HHHKHRHHHNHHRRTHQRHKHHHGQDDDVLQKMMLERDHSDSHYYHQLHRVHKDSKQKQR 679

Query:   669 RSKNSSVMQQLYLDTGKNDHIGHHRRRKFRES 700
             R     ++  L  D     H+   R+++ RES
Sbjct:   680 RRAKHGIV--LPRDV----HVERQRKQRLRES 705


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      701       656   0.00096  120 3  11 22  0.36    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  393 KB (2192 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  49.66u 0.17s 49.83t   Elapsed:  00:00:03
  Total cpu time:  49.67u 0.17s 49.84t   Elapsed:  00:00:03
  Start:  Tue May 21 13:44:53 2013   End:  Tue May 21 13:44:56 2013

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