BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005351
(701 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4JP36|HAP2_ARATH Protein HAPLESS 2 OS=Arabidopsis thaliana GN=HAP2 PE=2 SV=1
Length = 705
Score = 961 bits (2485), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/692 (67%), Positives = 554/692 (80%), Gaps = 28/692 (4%)
Query: 29 VVGVQILSKSKLEKCEKRTDSDNLNCTTKIVLNMAVPSGSSGGEASIVAEVVEVEENSTQ 88
V G+QILSKSKLEKCEK +DS NLNC+TKIVLN+AVPSGSSGGEASIVAE+VEVE+NS+
Sbjct: 22 VDGIQILSKSKLEKCEKTSDSGNLNCSTKIVLNLAVPSGSSGGEASIVAEIVEVEDNSSS 81
Query: 89 KMRTVRIPPVLTVNKTASYAVYELTYIRDVPYKPQEFYMKTRKCEPDAGADVVKICER-- 146
M+TVRIPPV+TVNK+A+YA+Y+LTYIRDVPYKPQE+++ TRKCE DAG D+V+ICER
Sbjct: 82 NMQTVRIPPVITVNKSAAYALYDLTYIRDVPYKPQEYHVTTRKCEHDAGPDIVQICERLR 141
Query: 147 ----------QPICCPCGPQRRIPSSCGNVFDKLLKGKANTAHCLRFPGDWFHVFGIGQR 196
QPICCPCGPQRR+PSSCG++FDK++KGKANTAHCLRFPGDWFHVFGIGQR
Sbjct: 142 DEKGNVLEQTQPICCPCGPQRRMPSSCGDIFDKMIKGKANTAHCLRFPGDWFHVFGIGQR 201
Query: 197 SIGFSVRIEVKTGSKVSEVTVGPENKTATSADNFLKVNLIGDFVGYTNIPSFEEFYLVIP 256
S+GFSVR+E+KTG++VSEV +GPEN+TAT+ DNFLKVNLIGDF GYT+IPSFE+FYLVIP
Sbjct: 202 SLGFSVRVELKTGTRVSEVIIGPENRTATANDNFLKVNLIGDFGGYTSIPSFEDFYLVIP 261
Query: 257 RQGG-PGQPQDLGGNFSMWMLLERTRFTLDGLECNKIGVSYEAFNGQPSFCSSPFWSCLH 315
R+ GQP LG N+SMWMLLER RFTLDGLECNKIGV YEAFN QP+FCSSP+WSCLH
Sbjct: 262 REAAEAGQPGSLGANYSMWMLLERVRFTLDGLECNKIGVGYEAFNTQPNFCSSPYWSCLH 321
Query: 316 NQLWNYREADQNRINRNQLPLYGVEGRFERMNQHPNAGSHSFSIGVTEVLNSNLLIELRA 375
NQLWN+RE+D NRI+R+QLPLYG+EGRFER+NQHPNAG HSFSIGVTE LN+NL+IELRA
Sbjct: 322 NQLWNFRESDINRIDRHQLPLYGLEGRFERINQHPNAGPHSFSIGVTETLNTNLMIELRA 381
Query: 376 DDIEYVYQRSPGKIISVIIPTFEALTQFGVATITTQNTGEVEASYSLTFDCSTGVTLMEE 435
DDIEYV+QRSPGKII++ IPTFEALTQFGVA + +NTGEVEASYSLTFDCS GV +EE
Sbjct: 382 DDIEYVFQRSPGKIINIAIPTFEALTQFGVAAVIIKNTGEVEASYSLTFDCSKGVAFVEE 441
Query: 436 QYFIIKPKETSIRSFKIYPTTNQAAKYTCSAILKDSDFSEVDRAECQFSTMATVLDNGSQ 495
Q+FIIKPK + RSFK+YPT +QAAKY C+AILKDS FSEVDRAECQFST ATVLDNG+Q
Sbjct: 442 QFFIIKPKAVTTRSFKLYPTKDQAAKYICTAILKDSQFSEVDRAECQFSTTATVLDNGTQ 501
Query: 496 IT-PFQPPKSSINDFFESIESIGKKLWEGLRDFITGKACRRKCSSFFDFSCHIQYICLSW 554
+T PFQ P++ FF+SI + K+ GL DFITG CR KCSSFFDFSCHIQY+CLSW
Sbjct: 502 VTNPFQIPETQPKGFFDSIRILWTKIINGLVDFITGDTCRNKCSSFFDFSCHIQYVCLSW 561
Query: 555 LVLFGLVLAIFPTVLVLLWLLHQKGLFDPLYDWWDDHFQSDNQRIRDFRSRRIDVDHPHV 614
+V+FGL+LA+FP +LLWLLHQKGLFDP YDWW+DHF D+ R R SR V+ H
Sbjct: 562 MVMFGLLLALFPITCLLLWLLHQKGLFDPCYDWWEDHFDLDHHR-RLLPSRADVVNRHHH 620
Query: 615 HVRKHHKQEGRHHKLEARRRRCGIHSDHKHK----HSDRDTDYYYYLHHVQKD--KHKHG 668
H + H + + G D K D+ YY+ LH V KD + +
Sbjct: 621 HHKHRHHHNHHRRTHQRHKHHHGQDDDVLQKMMLERDHSDSHYYHQLHRVHKDSKQKQRR 680
Query: 669 RSKNSSVMQQLYLDTGKNDHIGHHRRRKFRES 700
R+K+ V+ ++ H+ R+++ RES
Sbjct: 681 RAKHGIVLP-------RDVHVERQRKQRLRES 705
>sp|Q5W6B9|HAP2A_ORYSJ Protein HAPLESS 2-A OS=Oryza sativa subsp. japonica GN=HAP2A PE=2
SV=1
Length = 722
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/585 (58%), Positives = 437/585 (74%), Gaps = 32/585 (5%)
Query: 31 GVQILSKSKLEKCEKRTDSDN-LNCTTKIVLNMAVPSGSSGGEASIVAEVVEVEE--NST 87
G +ILSKS+LE C +D+ L C K+V+++AVPSG+SGGEAS+VA V VEE ++
Sbjct: 24 GTEILSKSRLESCSHDSDAGGRLKCDRKLVVDLAVPSGASGGEASLVARVAGVEEENDTP 83
Query: 88 QKMRTVRIPPVLTVNKTASYAVYELTYI-RDVPYKPQEFYMKTRKCEPDAGADVVKICER 146
+++R PPV+TV+K+A+YA+Y LTY+ RDV Y+P E Y+KT KCEP AGA VV CER
Sbjct: 84 SATKSIRDPPVITVSKSATYALYALTYLDRDVAYRPDEKYVKTHKCEPYAGAKVVGECER 143
Query: 147 ------------QPICCPCGPQRRIPSSCGNVFDKLLKGKANTAHCLRFPGDWFHVFGIG 194
+PICCPCGP R + S CG+++ KL KGKANTAHC+RFPGDWFHVFGIG
Sbjct: 144 LWDEKGNVIKQTEPICCPCGPHR-VQSKCGDIWSKLTKGKANTAHCVRFPGDWFHVFGIG 202
Query: 195 QRSIGFSVRIEVKTGSKVSEVTVGPENKTATSADNFLKVNLIGDFVGYTNIPSFEEFYLV 254
S+ FS+R++VK GS V +V VGPENKT S DNFL+V ++GD+ GYT+IPSFE+ YLV
Sbjct: 203 AWSLRFSIRVQVKKGSSVWDVVVGPENKTVVSGDNFLRVKVVGDYTGYTSIPSFEDNYLV 262
Query: 255 IPRQG-GPGQPQDLGGNFSMWMLLERTRFTLDGLECNKIGVSYEAFNGQPSFCSSPFWSC 313
PR+G G QPQDLG S WM+L+R RFTLDGLEC+KIGV YEA+ QP+FCS+P+ SC
Sbjct: 263 TPRKGTGSSQPQDLGNEHSKWMILDRVRFTLDGLECDKIGVGYEAYRNQPNFCSAPYGSC 322
Query: 314 LHNQLWNYREADQNRINRNQLPLYGVEGRFERMNQHPNAGSHSFSIGVTEVLNSNLLIEL 373
L NQLWN+ E D+ RI+ +QLPLY VEGRF+R+NQHPNAG+H+FS+GVTE LN+NLLIEL
Sbjct: 323 LGNQLWNFWEYDKRRIDNSQLPLYIVEGRFQRINQHPNAGAHTFSVGVTEDLNTNLLIEL 382
Query: 374 RADDIEYVYQRSPGKIISVIIPTFEALTQFGVATITTQNTGEVEASYSLTFDCSTGVTLM 433
ADDIEYVYQRSP KII + +PTFEAL+Q G+A +TT+N G++E+SYSLTF CS+G++ +
Sbjct: 383 MADDIEYVYQRSPAKIIDIRVPTFEALSQVGIANVTTKNIGKLESSYSLTFKCSSGISPV 442
Query: 434 EEQYFIIKPKETSIRSFKIYPTTNQAAKYTCSAILKDSDFSEVDRAECQFSTMATVLDNG 493
EEQ + +KP E RSF++ TT+QAA + C AILK SDFSE+DR +FST ATV +NG
Sbjct: 443 EEQLYTMKPDEVIARSFELRSTTDQAAMHQCEAILKASDFSELDREGYRFSTAATVYNNG 502
Query: 494 SQITPFQPPKSSINDFFESIESIGKKLWEGLRDFITGKACRRKCSSFFDFSCHIQYICLS 553
+QI P K F++SI K LW L DF+TG+ C KC FDF CHIQY+C+
Sbjct: 503 AQIGPTNDHKK--GGFWDSI----KALWRNLIDFLTGRLCWTKCPRLFDFGCHIQYVCIG 556
Query: 554 WLVLFGLVLAIFPTVLVLLWLLHQKGLFDPLYDWW----DDHFQS 594
W++ +L + P +V LWLLHQ+GLFDPLYDWW DD +++
Sbjct: 557 WIL----LLLLIPAAVVFLWLLHQEGLFDPLYDWWGLEPDDDYRA 597
>sp|B9G4M9|HAP2B_ORYSJ Protein HAPLESS 2-B OS=Oryza sativa subsp. japonica GN=HAP2B PE=3
SV=1
Length = 714
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/585 (56%), Positives = 420/585 (71%), Gaps = 40/585 (6%)
Query: 31 GVQILSKSKLEKCEKRTDSDN---LNCTTKIVLNMAVPSGSSGGEASIVAEVVEVEENST 87
GV++L+KS+LE C + D L C +KIV+++AVPSGS AS+VA V EVEEN T
Sbjct: 33 GVEVLAKSRLESCARGGSDDGRDRLTCDSKIVVDLAVPSGS----ASLVARVAEVEENGT 88
Query: 88 QKMRT-VRIPPVLTVNKTASYAVYELTYIRDVPYKPQEFYMKTRKCEPDAGADVVKICER 146
+ +R P ++T+NK+ YA+Y+LTY+RDV YKP+E ++KTRKCEP+AGA+VVK CER
Sbjct: 89 EAGEMPIRDPLIITINKSEVYALYDLTYLRDVAYKPEEKFVKTRKCEPEAGANVVKSCER 148
Query: 147 ------------QPICCPCGPQRRIPSSCGNVFDKLLKGKANTAHCLRFPGDWFHVFGIG 194
+P+CCPCGP RR+PSSCGN+ DK+ KGKANTAHCLRFP DWFHVF IG
Sbjct: 149 LRDEKGSIIEHTEPVCCPCGPHRRVPSSCGNILDKVAKGKANTAHCLRFPDDWFHVFDIG 208
Query: 195 QRSIGFSVRIEVKTGSKVSEVTVGPENKTATSADNFLKVNLIGDFVGYTNIPSFEEFYLV 254
+RS+ FS+R++VK GS SEV VGPEN+T S D+ L+VNL+GDF GYT++PS E FYLV
Sbjct: 209 RRSLWFSIRVQVKKGSSESEVIVGPENRTVVSEDSSLRVNLVGDFAGYTSLPSLENFYLV 268
Query: 255 IPRQG-GPGQPQDLGGNFSMWMLLERTRFTLDGLECNKIGVSYEAFNGQPSFCSSPFWSC 313
PR+G G GQ + LG +FS WMLLER FTLDGLECNKIGV YEAF QP+FCSSP SC
Sbjct: 269 TPRKGVGGGQLEVLGDDFSRWMLLERVLFTLDGLECNKIGVGYEAFRSQPNFCSSPLDSC 328
Query: 314 LHNQLWNYREADQNRINRNQLPLYGVEGRFERMNQHPNAGSHSFSIGVTEVLNSNLLIEL 373
L +QL + E D+NR+N +Q P Y V G+FER+NQ+PNAG H+FS+G+ EVLN+NL+IEL
Sbjct: 329 LGDQLSKFWEIDKNRVNNSQPPQYVVLGKFERINQYPNAGVHTFSVGIPEVLNTNLMIEL 388
Query: 374 RADDIEYVYQRSPGKIISVIIPTFEALTQFGVATITTQNTGEVEASYSLTFDCSTGVTLM 433
ADDIEYVYQRS GKIIS+ I +FEAL+Q G A + T+N G +EASYSLTFDC +G+ +
Sbjct: 389 SADDIEYVYQRSSGKIISINISSFEALSQVGSARVKTKNIGRLEASYSLTFDCLSGINPV 448
Query: 434 EEQYFIIKPKETSIRSFKIYPTTNQAAKYTCSAILKDSDFSEVDRAECQFSTMATVLDNG 493
EEQYFI+KP E IR+F + +T+QA+ YTC AILK SDFSE+DR E QFST ATVL+NG
Sbjct: 449 EEQYFIMKPDEKLIRTFDLRSSTDQASNYTCQAILKASDFSELDRKESQFSTTATVLNNG 508
Query: 494 SQITPFQP-PKSSINDFFESIESIGKKLWEGLRDFITGKACRRKCSSFFDFSCHIQYICL 552
+QI + K I FFE+I++ K+W L +F TG C +C SF F H
Sbjct: 509 TQIGSSENHTKGGIWGFFEAIKAWCAKMWHMLINFFTGTTCSTRCWSFLKFVIHGL---- 564
Query: 553 SWLVLFGLVLAIFPTVLVLLWLLHQKGLFDPLYDWWDDHFQSDNQ 597
++ +LWLLH+KGLFDPLY WWD S+ Q
Sbjct: 565 --------------LLVAVLWLLHRKGLFDPLYYWWDGVVGSEAQ 595
>sp|P57103|NAC3_HUMAN Sodium/calcium exchanger 3 OS=Homo sapiens GN=SLC8A3 PE=2 SV=2
Length = 927
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 30/159 (18%)
Query: 560 LVLAIFPTVLVLLWLLHQKGLFDPLYDWWDDHFQSDNQRIRDFRSRRIDVDHPHV----- 614
L L FP ++L W+ ++ LF Y + +++D R + DHP
Sbjct: 236 LTLFFFPVCVLLAWVADKRLLF---YKYMHKKYRTDKHRGIIIETEG---DHPKGIEMDG 289
Query: 615 HVRKHHKQEGRHHKLE------ARRRRCGIHSDHKHKHSDRDTDY------YYYLHHVQK 662
+ H +G LE +RR I D K KH ++D D YY L H QK
Sbjct: 290 KMMNSHFLDGNLVPLEGKEVDESRREMIRILKDLKQKHPEKDLDQLVEMANYYALSHQQK 349
Query: 663 DKHKHGRSKNSSVMQQLYLDTGKNDHIGHHRRRKFRESS 701
+ + R + + +M TG + + H + +++S
Sbjct: 350 SRAFY-RIQATRMM------TGAGNILKKHAAEQAKKAS 381
>sp|P70549|NAC3_RAT Sodium/calcium exchanger 3 OS=Rattus norvegicus GN=Slc8a3 PE=2 SV=1
Length = 927
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 30/159 (18%)
Query: 560 LVLAIFPTVLVLLWLLHQKGLFDPLYDWWDDHFQSDNQRIRDFRS-----RRIDVDHPHV 614
L L FP ++L W+ ++ LF Y + +++D R + + I++D +
Sbjct: 236 LTLFFFPVCVLLAWVADKRLLF---YKYMHKRYRTDKHRGIIIETEGEHPKGIEMDGKMM 292
Query: 615 HVRKHHKQEGRHHKLE------ARRRRCGIHSDHKHKHSDRDTDY------YYYLHHVQK 662
+ H +G LE +RR I D K KH ++D D YY L H QK
Sbjct: 293 N---SHFLDGNLIPLEGKEVDESRREMIRILKDLKQKHPEKDLDQLVEMANYYALSHQQK 349
Query: 663 DKHKHGRSKNSSVMQQLYLDTGKNDHIGHHRRRKFRESS 701
+ + R + + +M TG + + H + ++++
Sbjct: 350 SRAFY-RIQATRMM------TGAGNILKKHAAEQAKKTA 381
>sp|A5GCZ4|NUBCD_GEOUR NADH-quinone oxidoreductase subunit B/C/D OS=Geobacter
uraniireducens (strain Rf4) GN=nuoBCD PE=3 SV=1
Length = 793
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 472 DFSEVDRAECQFSTMATVLDNGSQITPFQPPKSSINDFFESIESIGKKLWEGLRDFIT-G 530
DF E F TV N + + ++ P + D + ++ G K + L D
Sbjct: 226 DFDLTGELELAFDHRLTVDRNATDMLTYRCPAELVPDVLKHLKQRGSKPFRRLEDIAAVD 285
Query: 531 KACRRKCSSFFDFSCHIQYICL 552
++CRR+ F DF+ + +C
Sbjct: 286 ESCRRERGKFRDFTVNYHLLCF 307
>sp|Q9SLA1|P2C22_ARATH Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana
GN=At2g25620 PE=1 SV=1
Length = 392
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 16/84 (19%)
Query: 156 QRRIPSSCGNVFDKLLKGKANTAHCLRFPGDWFHVFGIGQRSIGFSVRIEVKTGSKVSEV 215
+RRI +S G+VFD L G+ N A L GD FH+ G+ ++ K GS +
Sbjct: 236 RRRIEASGGHVFDGYLNGQLNVARAL---GD-FHMEGMKKK----------KDGSDCGPL 281
Query: 216 TVGPENKTA--TSADNFLKVNLIG 237
PE T T D FL + G
Sbjct: 282 IAEPELMTTKLTEEDEFLIIGCDG 305
>sp|P27399|ENV_SFV3L Envelope glycoprotein gp130 OS=Simian foamy virus type 3 (strain
LK3) GN=env PE=3 SV=1
Length = 982
Score = 34.3 bits (77), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 537 CSSFFDFSCHIQYICLSWLVLFGLVLAIFPTVLVLLWLLHQKGLFDPLYDWWDDHFQSDN 596
C++ C + IC+ +++F ++ F TV + W +F P+ DW H Q+
Sbjct: 62 CATSTRVMCWLFLICVLLIIVF---VSCFVTVARIQWN-RDINVFGPVIDWNVTH-QATY 116
Query: 597 QRIRDFR-SRRIDVDHPHV 614
Q+++ R +R + V+HPH+
Sbjct: 117 QQLKAARLTRSLKVEHPHI 135
>sp|Q06593|OPT2_YEAST Oligopeptide transporter 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=OPT2 PE=1 SV=1
Length = 877
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 19/80 (23%)
Query: 555 LVLFGLVLAIFPTVLVLLWLLHQKGLFDPLYDW------------WDDHFQSDNQRIRDF 602
LV +G + +P ++ +++H K LF+ DW W F+SD + + D+
Sbjct: 481 LVSYGAFICAYPLMITWSFIVHSKLLFNAFKDWALNLWAMRKLKSWVTMFKSDYRALDDY 540
Query: 603 RSRRIDVDHPHVHVRKHHKQ 622
D PH + K++K+
Sbjct: 541 -------DDPHSNAMKNYKE 553
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 266,685,422
Number of Sequences: 539616
Number of extensions: 11597482
Number of successful extensions: 26886
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 26448
Number of HSP's gapped (non-prelim): 221
length of query: 701
length of database: 191,569,459
effective HSP length: 125
effective length of query: 576
effective length of database: 124,117,459
effective search space: 71491656384
effective search space used: 71491656384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)