Query 005351
Match_columns 701
No_of_seqs 92 out of 94
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 22:05:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10699 HAP2-GCS1: Male gamet 99.9 3.4E-24 7.3E-29 169.4 2.2 49 275-323 1-49 (49)
2 PF07705 CARDB: CARDB; InterP 87.8 7.6 0.00017 33.6 10.6 71 401-476 18-90 (101)
3 PF10633 NPCBM_assoc: NPCBM-as 79.8 13 0.00029 31.7 8.5 64 404-467 7-74 (78)
4 PF11614 FixG_C: IG-like fold 73.3 48 0.001 30.5 10.9 79 406-484 35-116 (118)
5 COG1470 Predicted membrane pro 69.9 1.7E+02 0.0037 34.1 16.0 64 405-469 400-468 (513)
6 PF14874 PapD-like: Flagellar- 69.2 82 0.0018 27.8 14.0 66 405-471 23-89 (102)
7 PF00869 Flavi_glycoprot: Flav 64.4 83 0.0018 34.4 11.8 102 147-257 88-201 (293)
8 COG2928 Uncharacterized conser 61.4 7.1 0.00015 40.7 3.0 40 554-595 55-94 (222)
9 PF06280 DUF1034: Fn3-like dom 61.1 80 0.0017 28.8 9.6 72 403-474 9-104 (112)
10 PF03896 TRAP_alpha: Transloco 61.1 1.5E+02 0.0032 32.4 13.0 82 405-490 102-197 (285)
11 TIGR03066 Gem_osc_para_1 Gemma 58.4 59 0.0013 30.7 8.2 66 385-476 34-105 (111)
12 PF14884 EFF-AFF: Type I membr 55.7 2.3E+02 0.005 33.7 13.9 76 183-259 199-283 (589)
13 PHA02819 hypothetical protein; 55.6 20 0.00042 31.2 4.2 49 505-574 19-67 (71)
14 PF00703 Glyco_hydro_2: Glycos 49.1 1.8E+02 0.0038 25.2 11.5 94 389-484 3-108 (110)
15 PRK09918 putative fimbrial cha 47.6 1.5E+02 0.0033 30.9 10.3 97 13-126 5-103 (230)
16 PHA02844 putative transmembran 47.5 29 0.00063 30.5 4.0 19 556-574 51-69 (75)
17 COG3190 FliO Flagellar biogene 45.8 28 0.0006 34.0 4.1 32 554-586 24-55 (137)
18 PF09451 ATG27: Autophagy-rela 42.8 1.6E+02 0.0034 31.5 9.7 27 405-431 118-146 (268)
19 TIGR00869 sec62 protein transl 42.5 29 0.00063 36.6 4.0 53 537-589 135-207 (232)
20 PF01102 Glycophorin_A: Glycop 40.2 34 0.00074 32.7 3.7 22 555-576 68-89 (122)
21 PF05506 DUF756: Domain of unk 39.4 1.2E+02 0.0026 26.7 6.9 48 402-452 18-65 (89)
22 TIGR02745 ccoG_rdxA_fixG cytoc 34.6 7.2E+02 0.016 28.7 13.8 68 405-472 349-419 (434)
23 PHA02692 hypothetical protein; 33.3 64 0.0014 28.1 3.9 15 560-574 53-67 (70)
24 PLN03080 Probable beta-xylosid 32.1 90 0.002 38.5 6.5 50 405-454 687-744 (779)
25 PRK15098 beta-D-glucoside gluc 30.2 92 0.002 38.3 6.1 51 405-455 670-728 (765)
26 PRK10856 cytoskeletal protein 30.1 41 0.00089 37.2 2.9 21 553-573 111-131 (331)
27 PRK10019 nickel/cobalt efflux 29.9 1.1E+02 0.0024 33.2 6.1 7 584-590 86-92 (279)
28 PF03839 Sec62: Translocation 28.5 70 0.0015 33.7 4.1 52 537-588 127-200 (224)
29 PHA02650 hypothetical protein; 25.9 90 0.002 27.9 3.6 21 554-574 50-70 (81)
30 PHA03054 IMV membrane protein; 25.8 94 0.002 27.2 3.6 21 554-574 49-69 (72)
31 PF05297 Herpes_LMP1: Herpesvi 25.8 23 0.0005 38.5 0.0 90 538-635 134-242 (381)
32 PF12575 DUF3753: Protein of u 24.7 93 0.002 27.3 3.5 21 554-574 49-69 (72)
33 PF14155 DUF4307: Domain of un 24.5 2.4E+02 0.0053 26.3 6.6 51 431-483 32-84 (112)
34 PHA02975 hypothetical protein; 24.3 1E+02 0.0023 26.8 3.6 21 554-574 45-65 (69)
35 PF12273 RCR: Chitin synthesis 22.8 68 0.0015 30.4 2.6 8 649-656 73-80 (130)
36 PF06030 DUF916: Bacterial pro 22.8 2.3E+02 0.0049 26.8 6.1 20 438-457 87-106 (121)
37 PRK13211 N-acetylglucosamine-b 22.3 8.2E+02 0.018 28.7 11.5 40 448-487 367-406 (478)
38 PF13198 DUF4014: Protein of u 21.3 82 0.0018 27.6 2.5 30 565-596 29-59 (72)
39 PF02018 CBM_4_9: Carbohydrate 20.3 6.1E+02 0.013 22.4 8.9 41 417-457 33-75 (131)
No 1
>PF10699 HAP2-GCS1: Male gamete fusion factor; InterPro: IPR018928 The gene encoding Arabidopsis HAP2 is allelic with GCS1 (Generative cell-specific protein 1). HAP2 is expressed only in the haploid sperm and is required for efficient guidance of the pollen tube to the ovules. In Arabidopsis the protein is a predicted membrane protein with an N-terminal secretion signal, a single transmembrane domain and a C-terminal histidine-rich domain []. HAP2-GCS1 is found from plants to lower eukaryotes and is necessary for the fusion of the gametes in fertilisation. It is involved in a novel mechanism for gamete fusion where a first species-specific protein binds male and female gamete membranes together after which a second, broadly conserved protein, either directly or indirectly, causes fusion of the two membranes together. The broadly conserved protein is represented by this HAP2-GCS1 domain, conserved from plants to lower eukaryotes []. In Plasmodium berghei the protein is expressed only in male gametocytes and gametes, having a male-specific function during the interaction with female gametes, and being indispensable for parasite fertilisation. The gene in plants and eukaryotes might well have originated from acquisition of plastids from red algae [].
Probab=99.89 E-value=3.4e-24 Score=169.40 Aligned_cols=49 Identities=63% Similarity=1.094 Sum_probs=48.1
Q ss_pred EEEecceeccCCCccccccccchhhcCCCCCCCCCCCChhhHHHHHHHH
Q 005351 275 MLLERTRFTLDGLECNKIGVSYEAFNGQPSFCSSPFWSCLHNQLWNYRE 323 (701)
Q Consensus 275 MlLdk~~VdlsG~eCnKIGVSy~aF~~Q~n~C~~~~GSCL~NQL~dy~~ 323 (701)
|||||++||++|.|||||||||+||++|+++|++|+||||+|||+|||+
T Consensus 1 miv~k~~v~~~G~eCnKIGvs~~~f~~q~~~C~~~~gsCL~nQl~~f~~ 49 (49)
T PF10699_consen 1 MIVDKSLVDLDGLECNKIGVSYEAFRNQPNFCSSPPGSCLKNQLADFYE 49 (49)
T ss_pred CccchhhccCCCCccCcceeCHHHHHhcCCccCCCccchHHHhHHHHhC
Confidence 8999999999999999999999999999999999999999999999985
No 2
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=87.80 E-value=7.6 Score=33.60 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=45.0
Q ss_pred cceeEEEEEEEecCcee-eeEEEEEEcCCCCeeeceeEE-EeCCCceEEEEEEEeeccccccceEEEEEEEcCCCCce
Q 005351 401 TQFGVATITTQNTGEVE-ASYSLTFDCSTGVTLMEEQYF-IIKPKETSIRSFKIYPTTNQAAKYTCSAILKDSDFSEV 476 (701)
Q Consensus 401 S~~G~L~V~V~N~G~~~-A~Y~v~vnCS~~I~pI~~q~~-~I~p~~~~~~~F~I~~~s~~~~~~~C~v~L~ds~~~~l 476 (701)
-+...+++.|+|.|... ..+.+.+.-.+... ..+.+ .|.|+++..+.|.+... ....+.-.|.+ |....+-
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~--~~~~i~~L~~g~~~~v~~~~~~~--~~G~~~i~~~i-D~~n~i~ 90 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSV--STVTIPSLAPGESETVTFTWTPP--SPGSYTIRVVI-DPDNDID 90 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE--EEEEESEB-TTEEEEEEEEEE-S--S-CEEEEEEEE-STTTSS-
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCcee--ccEEECCcCCCcEEEEEEEEEeC--CCCeEEEEEEE-eeCCccc
Confidence 45567999999999775 56777765443322 45555 88999999998888776 55677755554 6665443
No 3
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=79.83 E-value=13 Score=31.74 Aligned_cols=64 Identities=23% Similarity=0.306 Sum_probs=37.4
Q ss_pred eEEEEEEEecCcee-eeEEEEEEcCCCCe--eeceeEEEeCCCceEEEEEEEeeccccc-cceEEEEE
Q 005351 404 GVATITTQNTGEVE-ASYSLTFDCSTGVT--LMEEQYFIIKPKETSIRSFKIYPTTNQA-AKYTCSAI 467 (701)
Q Consensus 404 G~L~V~V~N~G~~~-A~Y~v~vnCS~~I~--pI~~q~~~I~p~~~~~~~F~I~~~s~~~-~~~~C~v~ 467 (701)
..++++|+|.|... ....++++-..|-. .-..+...|+|+++..+.|.|.+..+-. ..|.=.+.
T Consensus 7 ~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~ 74 (78)
T PF10633_consen 7 VTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYTVTVT 74 (78)
T ss_dssp EEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEEEEEE
T ss_pred EEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEEEEEE
Confidence 46899999999765 45778887788765 3344455899999999999999976633 45544443
No 4
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=73.30 E-value=48 Score=30.51 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=51.2
Q ss_pred EEEEEEecCceeeeEEEEEEcCCCCee-eceeEEEeCCCceEEEEEEEeeccccc--cceEEEEEEEcCCCCceeeeEEE
Q 005351 406 ATITTQNTGEVEASYSLTFDCSTGVTL-MEEQYFIIKPKETSIRSFKIYPTTNQA--AKYTCSAILKDSDFSEVDRAECQ 482 (701)
Q Consensus 406 L~V~V~N~G~~~A~Y~v~vnCS~~I~p-I~~q~~~I~p~~~~~~~F~I~~~s~~~--~~~~C~v~L~ds~~~~lD~~~~~ 482 (701)
-++.+.|.+.-+-.|.+++.=..++.. .....+.|.|++...+.|.|....+.. ....=.+.+.|..+...++..-.
T Consensus 35 Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~~~~~~~~i~f~v~~~~~~~~~~~~s~ 114 (118)
T PF11614_consen 35 YTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPPDALKSGSTPITFTVTDDDGGEIITYKST 114 (118)
T ss_dssp EEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-GGG-SSSEEEEEEEEEEGGGTEEEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECHHHccCCCeeEEEEEEECCCCEEEEEEEE
Confidence 468899999999999999866667776 566899999999998888887765532 34455555656667777776666
Q ss_pred EE
Q 005351 483 FS 484 (701)
Q Consensus 483 F~ 484 (701)
|-
T Consensus 115 F~ 116 (118)
T PF11614_consen 115 FI 116 (118)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 5
>COG1470 Predicted membrane protein [Function unknown]
Probab=69.90 E-value=1.7e+02 Score=34.11 Aligned_cols=64 Identities=22% Similarity=0.298 Sum_probs=45.0
Q ss_pred EEEEEEEecCcee-eeEEEEEEcCCCCeee---ceeEEEeCCCceEEEEEEEeeccc-cccceEEEEEEE
Q 005351 405 VATITTQNTGEVE-ASYSLTFDCSTGVTLM---EEQYFIIKPKETSIRSFKIYPTTN-QAAKYTCSAILK 469 (701)
Q Consensus 405 ~L~V~V~N~G~~~-A~Y~v~vnCS~~I~pI---~~q~~~I~p~~~~~~~F~I~~~s~-~~~~~~C~v~L~ 469 (701)
.+.+.|.|.|... .+-.+.++-..| ..+ +.+.-.++|++..+.+..|++..+ .++.|.-++.-+
T Consensus 400 ~i~i~I~NsGna~LtdIkl~v~~Pqg-Wei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 400 TIRISIENSGNAPLTDIKLTVNGPQG-WEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAK 468 (513)
T ss_pred eEEEEEEecCCCccceeeEEecCCcc-ceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEe
Confidence 6889999999654 455677777765 322 345667899999999999988765 445665555444
No 6
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=69.16 E-value=82 Score=27.84 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=45.0
Q ss_pred EEEEEEEecCceeeeEEEEEEc-CCCCeeeceeEEEeCCCceEEEEEEEeeccccccceEEEEEEEcC
Q 005351 405 VATITTQNTGEVEASYSLTFDC-STGVTLMEEQYFIIKPKETSIRSFKIYPTTNQAAKYTCSAILKDS 471 (701)
Q Consensus 405 ~L~V~V~N~G~~~A~Y~v~vnC-S~~I~pI~~q~~~I~p~~~~~~~F~I~~~s~~~~~~~C~v~L~ds 471 (701)
...|.++|+|.+.+.|.+...- .....-++...-.|.|+.+......+.. ......+.+.+.+.-.
T Consensus 23 ~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~-~~~~g~~~~~l~i~~e 89 (102)
T PF14874_consen 23 SRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSP-TKPLGDYEGSLVITTE 89 (102)
T ss_pred EEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEe-CCCCceEEEEEEEEEC
Confidence 5889999999999999998632 1234444445557999998777555553 2344567777766433
No 7
>PF00869 Flavi_glycoprot: Flavivirus glycoprotein, central and dimerisation domains; InterPro: IPR011999 Flaviviruses are small, enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Yellow fever virus (YFV), West Nile virus (WNV), Tick-borne encephalitis virus, Japanese encephalitis virus and Dengue virus 2 viruses []. Flaviviruses consist of three structural proteins: the core nucleocapsid protein C (IPR001122 from INTERPRO), and the envelope glycoproteins M (IPR000069 from INTERPRO) and E. Glycoprotein E is a class II viral fusion protein that mediates both receptor binding and fusion. Class II viral fusion proteins are found in flaviviruses and alphaviruses, and are structurally distinct from class I fusion proteins from influenza virus and HIV. Glycoprotein E is comprised of three domains: domain I (dimerisation domain) is an 8-stranded beta barrel, domain II (central domain) is an elongated domain composed of twelve beta strands and two alpha helices, and domain III (immunoglobulin-like domain) is an IgC-like module with ten beta strands. This entry represents domains I and II, which are intertwined []. The glycoprotein E dimers on the viral surface re-cluster irreversibly into fusion-competent trimers upon exposure to low pH, as found in the acidic environment of the endosome. The formation of trimers results in a conformational change in the hinge region of domain II, a key structural element that opens a ligand-binding hydrophobic pocket at the interface between domains I and II. The conformational change results in the exposure of a fusion peptide loop at the tip of domain II, which is required in the fusion step to drive the cellular and viral membranes together by inserting into the membrane [].; GO: 0016021 integral to membrane, 0019031 viral envelope; PDB: 3P54_A 1OK8_A 1OAN_A 1OKE_B 3C5X_A 3C6E_A 2JSF_A 1URZ_B 3IYW_A 2JV6_A ....
Probab=64.36 E-value=83 Score=34.43 Aligned_cols=102 Identities=24% Similarity=0.372 Sum_probs=62.6
Q ss_pred CceeeeCCCCCc-ccCcccccccccccCCcceeeeecccCC-eeEEEeeccceeEEEEEEEEEEcc---------eEeEE
Q 005351 147 QPICCPCGPQRR-IPSSCGNVFDKLLKGKANTAHCLRFPGD-WFHVFGIGQRSIGFSVRIEVKTGS---------KVSEV 215 (701)
Q Consensus 147 QGfCC~C~~~~r-~~~~Cg~~~~~l~~g~~~SAHCLrf~~~-WY~vy~I~~~~i~y~I~VtI~~gs---------s~~~v 215 (701)
..|=|.=+..+| +..-||-| |+-+-.-|.+|.=. -..+|.|++..|.|+|.|+|-.+. ...++
T Consensus 88 ~~~vCKr~~sDRGWGNGCgLF------GKGSIvtCaKftC~k~~~g~~id~enI~Y~V~v~vH~g~~~~~~~~~~~~~~~ 161 (293)
T PF00869_consen 88 KNYVCKRGYSDRGWGNGCGLF------GKGSIVTCAKFTCSKKATGYVIDRENIEYTVKVEVHGGTKSAANGTSKHRKTA 161 (293)
T ss_dssp TTEEEEEEEEEESGGGT-SS-------EEEEEEEEEEEEEEEEEEEEE--GGGEEEEEEEEEE-SBCTTTTSHTTTEEEE
T ss_pred cccEeeccccccccccccEEE------eCCceEEEEEEEcCCcceEEEEEeeeEEEEEEEeccCCccccccccccceeEE
Confidence 445565555555 57788644 56667778887764 688999999999999999998752 35688
Q ss_pred EEcCCCcceeecCCcE-EEEEeecccCCCCCCCccccEEEeeC
Q 005351 216 TVGPENKTATSADNFL-KVNLIGDFVGYTNIPSFEEFYLVIPR 257 (701)
Q Consensus 216 ~Lgp~~~~~~s~d~~l-~~~LiGDf~~~~~~p~l~~~yLliPs 257 (701)
++.|..+...-+-.+- .+.|-= ..++-.||++.||+.=.
T Consensus 162 ~fTp~s~~~~~~lgdYG~vtl~C---~~~sg~D~~~~yl~~~~ 201 (293)
T PF00869_consen 162 TFTPQSPKQTVELGDYGTVTLEC---RVRSGLDFSQYYLVEMG 201 (293)
T ss_dssp EEBTTS-EEEEEEGGGBEEEEEE---ECGGSS-TTSEEEEEET
T ss_pred EEEeCCCcEEEEcCCCcEEEEEE---EeccCcChhhEEEEEEC
Confidence 9999887554431111 111111 12456788998888654
No 8
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=61.38 E-value=7.1 Score=40.74 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhhhccCc
Q 005351 554 WLVLFGLVLAIFPTVLVLLWLLHQKGLFDPLYDWWDDHFQSD 595 (701)
Q Consensus 554 ~~~~~~l~l~~~~~~l~~l~ll~k~g~~~~~~~~~~~~~~~~ 595 (701)
++.-++++++++ +++++-+|.+++++.+|..|||.+++.=
T Consensus 55 ~i~~lg~il~ii--li~l~G~l~~~~ig~~l~~~~d~~L~Ri 94 (222)
T COG2928 55 NIPGLGVILAII--LIFLLGFLARNMIGRSLLSLGDSLLRRI 94 (222)
T ss_pred hhHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHccC
Confidence 444455555544 4448899999999999999999998753
No 9
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=61.10 E-value=80 Score=28.81 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=46.2
Q ss_pred eeEEEEEEEecCceeeeEEEEEE-cC-------CC------------CeeeceeEEEeCCCceEEEEEEEeeccc-c---
Q 005351 403 FGVATITTQNTGEVEASYSLTFD-CS-------TG------------VTLMEEQYFIIKPKETSIRSFKIYPTTN-Q--- 458 (701)
Q Consensus 403 ~G~L~V~V~N~G~~~A~Y~v~vn-CS-------~~------------I~pI~~q~~~I~p~~~~~~~F~I~~~s~-~--- 458 (701)
....+|++.|.|.-+..|.+... .. .+ ..-.+...++|+|+++..+.+.|.+... .
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~~~~~~~ 88 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPSGLDASN 88 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--GGGHHTT
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehhcCCccc
Confidence 35788999999999999998754 11 01 2233567899999999999999988542 2
Q ss_pred ccceEEEEEEEcCCCC
Q 005351 459 AAKYTCSAILKDSDFS 474 (701)
Q Consensus 459 ~~~~~C~v~L~ds~~~ 474 (701)
..-+.=.|.|.++++.
T Consensus 89 ~~~~eG~I~~~~~~~~ 104 (112)
T PF06280_consen 89 GPFYEGFITFKSSDGE 104 (112)
T ss_dssp -EEEEEEEEEESSTTS
T ss_pred CCEEEEEEEEEcCCCC
Confidence 3466777888887776
No 10
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=61.08 E-value=1.5e+02 Score=32.37 Aligned_cols=82 Identities=15% Similarity=0.194 Sum_probs=48.4
Q ss_pred EEEEEEEecCceeeeEEEEE-----EcCC----CCeeecee--EEEeCCCceEEEEEEEeecccccc---ceEEEEEEEc
Q 005351 405 VATITTQNTGEVEASYSLTF-----DCST----GVTLMEEQ--YFIIKPKETSIRSFKIYPTTNQAA---KYTCSAILKD 470 (701)
Q Consensus 405 ~L~V~V~N~G~~~A~Y~v~v-----nCS~----~I~pI~~q--~~~I~p~~~~~~~F~I~~~s~~~~---~~~C~v~L~d 470 (701)
.+-|.++|.|. ..|+|.. .... .|....++ ...|+|+++.++.+.+.+....+. .-.=.+...|
T Consensus 102 ~~LvgftN~g~--~~~~V~~i~aSl~~p~d~~~~iqNfTa~~y~~~V~pg~~aT~~YsF~~~~~l~pr~f~L~i~l~y~d 179 (285)
T PF03896_consen 102 KFLVGFTNKGS--EPFTVESIEASLRYPQDYSYYIQNFTAVRYNREVPPGEEATFPYSFTPSEELAPRPFGLVINLIYED 179 (285)
T ss_pred EEEEEEEeCCC--CCEEEEEEeeeecCccccceEEEeecccccCcccCCCCeEEEEEEEecchhcCCcceEEEEEEEEEe
Confidence 47788999997 5777752 2222 23333333 557899999999999887644332 2333444458
Q ss_pred CCCCceeeeEEEEEeeeeee
Q 005351 471 SDFSEVDRAECQFSTMATVL 490 (701)
Q Consensus 471 s~~~~lD~~~~~F~TtaT~~ 490 (701)
++|...-.. -|+-|-++.
T Consensus 180 ~~g~~y~~~--~fN~TV~Iv 197 (285)
T PF03896_consen 180 SDGNQYQVT--VFNGTVTIV 197 (285)
T ss_pred CCCCEEEEE--EecceEEEe
Confidence 888654222 244444444
No 11
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=58.37 E-value=59 Score=30.72 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=41.6
Q ss_pred CCeEEEEEEccccccccceeEEEEEEEecCc---eeeeEEEEEEcCCCCeeeceeEEEe--CCCceE-EEEEEEeecccc
Q 005351 385 SPGKIISVIIPTFEALTQFGVATITTQNTGE---VEASYSLTFDCSTGVTLMEEQYFII--KPKETS-IRSFKIYPTTNQ 458 (701)
Q Consensus 385 SpGkI~sv~v~~FEA~S~~G~L~V~V~N~G~---~~A~Y~v~vnCS~~I~pI~~q~~~I--~p~~~~-~~~F~I~~~s~~ 458 (701)
||..| .|+ .+|.|.|.+.|.|. +.+.|++. .+.+++ .|+.+. --...+.-.++
T Consensus 34 ~~~~l------eF~---~dGKL~v~~gnng~~~~~~Gty~L~-----------G~kLtL~~~p~g~t~k~~Vtv~~l~~- 92 (111)
T TIGR03066 34 DDVVI------EFA---KDGKLVVTIGEKGKEVKADGTYKLD-----------GNKLTLTLKAGGKEKKETLTVKKLTD- 92 (111)
T ss_pred CceEE------EEc---CCCeEEEecCCCCcEeccCceEEEE-----------CCEEEEEEcCCCccccceEEEEEecC-
Confidence 56666 665 89999999999996 57888887 445555 454442 22222221111
Q ss_pred ccceEEEEEEEcCCCCce
Q 005351 459 AAKYTCSAILKDSDFSEV 476 (701)
Q Consensus 459 ~~~~~C~v~L~ds~~~~l 476 (701)
=...|+|++|+.+
T Consensus 93 -----~~Lvl~d~dg~~~ 105 (111)
T TIGR03066 93 -----DELVGKDPDGKKD 105 (111)
T ss_pred -----CeEEEEcCCCCEe
Confidence 2467888888765
No 12
>PF14884 EFF-AFF: Type I membrane glycoproteins cell-cell fusogen
Probab=55.66 E-value=2.3e+02 Score=33.75 Aligned_cols=76 Identities=7% Similarity=0.006 Sum_probs=41.7
Q ss_pred ccCCeeEEEeeccceeEEEEEEEEEEcc--eE------eEEEEcCCCcceeecCCcEEEEE-eecccCCCCCCCccccEE
Q 005351 183 FPGDWFHVFGIGQRSIGFSVRIEVKTGS--KV------SEVTVGPENKTATSADNFLKVNL-IGDFVGYTNIPSFEEFYL 253 (701)
Q Consensus 183 f~~~WY~vy~I~~~~i~y~I~VtI~~gs--s~------~~v~Lgp~~~~~~s~d~~l~~~L-iGDf~~~~~~p~l~~~yL 253 (701)
+++.-|-+-.+++|...=.+.=.++... +. .++..-++-. ....+.+-+.++ ++..++...+-.|++-|.
T Consensus 199 ~~n~~y~Avkl~QP~t~aif~y~~y~~~~g~~w~e~~~e~ir~~~~~g-~~~~~l~~~~r~sl~vta~g~~~~QL~~GMY 277 (589)
T PF14884_consen 199 YDNRTYVAVKLEQPTTDAIFTYSIYDKVAGGQWIEKDKEEIRSQLDKG-SQQNELDHKRRISLRVTAGGRPSHQLETGMY 277 (589)
T ss_pred cCCcEEEEEecCCCcEEEEEEeeeeeccccceeEeccCceEEEecCCc-hhhcccccccEEEEEEeecCCccccccCccE
Confidence 3556799999999866544444444321 11 2233322221 111122223333 366666667788888899
Q ss_pred EeeCCC
Q 005351 254 VIPRQG 259 (701)
Q Consensus 254 liPs~~ 259 (701)
+.|+.+
T Consensus 278 yf~~~n 283 (589)
T PF14884_consen 278 YFASEN 283 (589)
T ss_pred EEEcCC
Confidence 999864
No 13
>PHA02819 hypothetical protein; Provisional
Probab=55.57 E-value=20 Score=31.22 Aligned_cols=49 Identities=22% Similarity=0.509 Sum_probs=26.4
Q ss_pred CCCchhhhHHHhhhhhccccccccccccccccccccceeeeeehhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005351 505 SINDFFESIESIGKKLWEGLRDFITGKACRRKCSSFFDFSCHIQYICLSWLVLFGLVLAIFPTVLVLLWL 574 (701)
Q Consensus 505 ~~~gf~~~i~~~~~~~~~~~~~f~~g~~C~~~C~~f~d~~C~i~~~C~~~~~~~~l~l~~~~~~l~~l~l 574 (701)
-.+.|-|-+++ .|.| .+-.|..+|+.. +|++.++++++++.+.++++||
T Consensus 19 DFnnFI~VVks-------VLtd--~s~~~~~~~~~~------------~~~~ii~l~~~~~~~~~~flYL 67 (71)
T PHA02819 19 DFNNFINVVKS-------VLNN--ENYNKKTKKSFL------------RYYLIIGLVTIVFVIIFIIFYL 67 (71)
T ss_pred HHHHHHHHHHH-------HHcC--CCCcccccCChh------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666665 3444 334455555443 3444455666666666666665
No 14
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=49.10 E-value=1.8e+02 Score=25.18 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=56.6
Q ss_pred EEEEEcc-ccccccceeEEEEEE--EecCceeeeEEEEEEcCCC---CeeeceeEEEeCCCceEEEEEEEeeccc-----
Q 005351 389 IISVIIP-TFEALTQFGVATITT--QNTGEVEASYSLTFDCSTG---VTLMEEQYFIIKPKETSIRSFKIYPTTN----- 457 (701)
Q Consensus 389 I~sv~v~-~FEA~S~~G~L~V~V--~N~G~~~A~Y~v~vnCS~~---I~pI~~q~~~I~p~~~~~~~F~I~~~s~----- 457 (701)
|..+.+- .++.. ..+.+.|.+ .|.+.....+.|++...+. ............++......+.+.+...
T Consensus 3 I~dv~v~~~~~~~-~~~~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lW~p 81 (110)
T PF00703_consen 3 IEDVFVTPDLDDD-DSAKVSVEVEVRNESNKPLDVTVRVRLFDPEGKKVVTQSPVVSLSAPGQARITLTIEIPNPKLWSP 81 (110)
T ss_dssp EEEEEEEEEEETT-SEEEEEEEEEEEEESSSSCEEEEEEEEEETTSEEEEEEEEEEEECCCCEEEEEEEEEEESS-BBES
T ss_pred EEEEEEEEEEcCC-CEEEEEEEEEEEeCCCCcEEEEEEEEEECCCCCEEEEeeeEEEecCCceeEEEEEEEcCCCCCcCC
Confidence 3444432 34432 566655555 8888888888888755442 2222344455555555444344444321
Q ss_pred -cccceEEEEEEEcCCCCceeeeEEEEE
Q 005351 458 -QAAKYTCSAILKDSDFSEVDRAECQFS 484 (701)
Q Consensus 458 -~~~~~~C~v~L~ds~~~~lD~~~~~F~ 484 (701)
...-|...+.| +.+|..+|.....|-
T Consensus 82 ~~P~LY~l~v~l-~~~g~~~d~~~~~~G 108 (110)
T PF00703_consen 82 EDPYLYTLEVEL-DDDGEVLDSIETRFG 108 (110)
T ss_dssp SSBSEEEEEEEE-EETTEEEEEEEEEEE
T ss_pred CCceEEEEEEEE-EeCCEEEEEEEeEee
Confidence 12478999999 888899999988774
No 15
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=47.60 E-value=1.5e+02 Score=30.92 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhCCC-ccccEEEEEeeeeccccccccccccCcceeEEEEEEecCCCCCCceEEEEEEEEEeeccccc-c
Q 005351 13 FLLILFCILNLLSPR-CVVGVQILSKSKLEKCEKRTDSDNLNCTTKIVLNMAVPSGSSGGEASIVAEVVEVEENSTQK-M 90 (701)
Q Consensus 13 ~~~~~~l~~~~~~~~-~~~~a~iissS~ie~C~~~s~~~~~~C~kKlVvtL~V~ng~~~~e~s~v~ev~~v~e~~t~k-~ 90 (701)
|+.+|.+++++++.. .+..+..+...++..-..+. -++++|.|.+. + .+..++ .|.++..+. .
T Consensus 5 ~~~~~~~~~l~~~~~~~a~a~v~l~~tRvi~~~~~~-----------~~si~v~N~~~--~-p~lvQ~-wv~~~~~~~~~ 69 (230)
T PRK09918 5 LFFLFTALVLLSSSSAVHAAGMVPETSVVIVEESDG-----------EGSINVKNTDS--N-PILLYT-TLVDLPEDKSK 69 (230)
T ss_pred hHHHHHHHHHHHhhhHhhEeeEEEccEEEEEECCCC-----------eEEEEEEcCCC--C-cEEEEE-EEecCCCCCCC
Confidence 444455444444332 23344457778887776432 25788888542 2 233222 444322212 2
Q ss_pred eeEeeCcEEEEEeceeEEEeeeeEeecCCCCceeEE
Q 005351 91 RTVRIPPVLTVNKTASYAVYELTYIRDVPYKPQEFY 126 (701)
Q Consensus 91 ~~L~~p~~Iti~KS~V~~~YpL~Y~~~vn~kp~E~~ 126 (701)
.=+..||...+.-...+.. .+.|....|.+ +|..
T Consensus 70 ~fivtPPl~rl~pg~~q~v-Rii~~~~lp~d-rEs~ 103 (230)
T PRK09918 70 LLLVTPPVARVEPGQSQQV-RFILKSGSPLN-TEHL 103 (230)
T ss_pred CEEEcCCeEEECCCCceEE-EEEECCCCCCC-eeEE
Confidence 3457789888887766533 44455554443 6654
No 16
>PHA02844 putative transmembrane protein; Provisional
Probab=47.52 E-value=29 Score=30.49 Aligned_cols=19 Identities=26% Similarity=0.705 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005351 556 VLFGLVLAIFPTVLVLLWL 574 (701)
Q Consensus 556 ~~~~l~l~~~~~~l~~l~l 574 (701)
+.++++++++.+.++++||
T Consensus 51 ~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 51 WILTIIFVVFATFLTFLYL 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666665
No 17
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=45.83 E-value=28 Score=34.01 Aligned_cols=32 Identities=31% Similarity=0.725 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccchh
Q 005351 554 WLVLFGLVLAIFPTVLVLLWLLHQKGLFDPLYD 586 (701)
Q Consensus 554 ~~~~~~l~l~~~~~~l~~l~ll~k~g~~~~~~~ 586 (701)
++-+|+-++++++++|++.|++.|.+ +.|+..
T Consensus 24 ~~~~~gsL~~iL~lil~~~wl~kr~~-~~~~~~ 55 (137)
T COG3190 24 LAQMFGSLILILALILFLAWLVKRLG-RAPLFK 55 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hcccCC
Confidence 56677888888999999999999999 556543
No 18
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=42.83 E-value=1.6e+02 Score=31.49 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=17.6
Q ss_pred EEEEEEEe--cCceeeeEEEEEEcCCCCe
Q 005351 405 VATITTQN--TGEVEASYSLTFDCSTGVT 431 (701)
Q Consensus 405 ~L~V~V~N--~G~~~A~Y~v~vnCS~~I~ 431 (701)
-|+|..++ .|...-.-.|.+.|..+..
T Consensus 118 Gl~l~l~G~~~~~~~~~a~i~f~Cd~~~~ 146 (268)
T PF09451_consen 118 GLRLKLKGGKWGSNNQSAVIEFQCDKNAS 146 (268)
T ss_pred CEEEEEeCCCCCCceEEEEEEEEcCCCCC
Confidence 46666665 4566666777788877654
No 19
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=42.48 E-value=29 Score=36.64 Aligned_cols=53 Identities=23% Similarity=0.449 Sum_probs=30.9
Q ss_pred ccccceeeee--ehhhhHHHHHHHHHHHHHHHH---HHHHHHHHHhcCC---------------cccchhhhh
Q 005351 537 CSSFFDFSCH--IQYICLSWLVLFGLVLAIFPT---VLVLLWLLHQKGL---------------FDPLYDWWD 589 (701)
Q Consensus 537 C~~f~d~~C~--i~~~C~~~~~~~~l~l~~~~~---~l~~l~ll~k~g~---------------~~~~~~~~~ 589 (701)
|=..|-..|- +-|.|++-+..++++++++.+ +.+++|++...|+ |.|||.|=|
T Consensus 135 lFPlWP~~~r~gv~YlS~~~lgll~~~~~laivRlilF~i~~~~~g~~fWlfPNLfeD~Gf~eSF~Ply~~~~ 207 (232)
T TIGR00869 135 LFPLWPRFMRRGSWYLSLGALGIIGGFFAVAILRLILFVLTLIVVKPGIWIFPNLFADVGFLDSFKPLWGWHE 207 (232)
T ss_pred hcccChHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeecchhcccCcceeeccceeccc
Confidence 3344444443 367888877666555544433 5555666655553 568888753
No 20
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.20 E-value=34 Score=32.75 Aligned_cols=22 Identities=14% Similarity=0.535 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005351 555 LVLFGLVLAIFPTVLVLLWLLH 576 (701)
Q Consensus 555 ~~~~~l~l~~~~~~l~~l~ll~ 576 (701)
++.|+.++++++++|+++|++.
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~ir 89 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888887777763
No 21
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=39.43 E-value=1.2e+02 Score=26.66 Aligned_cols=48 Identities=10% Similarity=0.127 Sum_probs=37.2
Q ss_pred ceeEEEEEEEecCceeeeEEEEEEcCCCCeeeceeEEEeCCCceEEEEEEE
Q 005351 402 QFGVATITTQNTGEVEASYSLTFDCSTGVTLMEEQYFIIKPKETSIRSFKI 452 (701)
Q Consensus 402 ~~G~L~V~V~N~G~~~A~Y~v~vnCS~~I~pI~~q~~~I~p~~~~~~~F~I 452 (701)
..|.|.+++.|.|.-...|+|.-+=. ..-..+.++|+|+++....+++
T Consensus 18 ~~g~l~l~l~N~g~~~~~~~v~~~~y---~~~~~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 18 ATGNLRLTLSNPGSAAVTFTVYDNAY---GGGGPWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CCCEEEEEEEeCCCCcEEEEEEeCCc---CCCCCEEEEECCCCEEEEEEee
Confidence 45789999999999999888875211 1134589999999998888877
No 22
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=34.63 E-value=7.2e+02 Score=28.72 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=44.6
Q ss_pred EEEEEEEecCceeeeEEEEEEcCCCCeeece-eEEEeCCCceEEEEEEEeeccc--cccceEEEEEEEcCC
Q 005351 405 VATITTQNTGEVEASYSLTFDCSTGVTLMEE-QYFIIKPKETSIRSFKIYPTTN--QAAKYTCSAILKDSD 472 (701)
Q Consensus 405 ~L~V~V~N~G~~~A~Y~v~vnCS~~I~pI~~-q~~~I~p~~~~~~~F~I~~~s~--~~~~~~C~v~L~ds~ 472 (701)
.-++.+.|....+-.|++++.=-.++.-.-. ..+.++|++.....+.+.+... ...++.=.+.+.+.+
T Consensus 349 ~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~~~~~~~~~~i~~~v~~~~ 419 (434)
T TIGR02745 349 TYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPDALKSGITSIEIRAYAED 419 (434)
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEechhhccCCceeEEEEEEECC
Confidence 3478889999999999999865555433323 3789999999888777766532 123444444455433
No 23
>PHA02692 hypothetical protein; Provisional
Probab=33.34 E-value=64 Score=28.14 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 005351 560 LVLAIFPTVLVLLWL 574 (701)
Q Consensus 560 l~l~~~~~~l~~l~l 574 (701)
++++++.+.++++||
T Consensus 53 ~~~~~~~vll~flYL 67 (70)
T PHA02692 53 LIAAAIGVLLCFHYL 67 (70)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555556655
No 24
>PLN03080 Probable beta-xylosidase; Provisional
Probab=32.12 E-value=90 Score=38.48 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=37.6
Q ss_pred EEEEEEEecCceeeeEEEEEEcC----CCCeeec----eeEEEeCCCceEEEEEEEee
Q 005351 405 VATITTQNTGEVEASYSLTFDCS----TGVTLME----EQYFIIKPKETSIRSFKIYP 454 (701)
Q Consensus 405 ~L~V~V~N~G~~~A~Y~v~vnCS----~~I~pI~----~q~~~I~p~~~~~~~F~I~~ 454 (701)
.+.|+|+|+|.+.+...+++.=+ ..-.|+- =+.+.++|+++.+.+|.|..
T Consensus 687 ~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~ 744 (779)
T PLN03080 687 NVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDP 744 (779)
T ss_pred EEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeCc
Confidence 48899999999999999886322 2223442 23678999999999999965
No 25
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=30.20 E-value=92 Score=38.26 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=37.7
Q ss_pred EEEEEEEecCceeeeEEEEEEcC---CCC-eee----ceeEEEeCCCceEEEEEEEeec
Q 005351 405 VATITTQNTGEVEASYSLTFDCS---TGV-TLM----EEQYFIIKPKETSIRSFKIYPT 455 (701)
Q Consensus 405 ~L~V~V~N~G~~~A~Y~v~vnCS---~~I-~pI----~~q~~~I~p~~~~~~~F~I~~~ 455 (701)
.++|.|+|+|...+.-.+++.=+ ..+ .|. .=+.+.++|+++.+.+|.|...
T Consensus 670 ~v~v~V~NtG~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~~ 728 (765)
T PRK15098 670 TASVTVTNTGKREGATVVQLYLQDVTASMSRPVKELKGFEKIMLKPGETQTVSFPIDIE 728 (765)
T ss_pred EEEEEEEECCCCCccEEEEEeccCCCCCCCCHHHhccCceeEeECCCCeEEEEEeecHH
Confidence 57789999999999999986322 222 232 2236789999999999999764
No 26
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=30.06 E-value=41 Score=37.20 Aligned_cols=21 Identities=24% Similarity=0.548 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005351 553 SWLVLFGLVLAIFPTVLVLLW 573 (701)
Q Consensus 553 ~~~~~~~l~l~~~~~~l~~l~ 573 (701)
+|++.+..+++++.++|+.+|
T Consensus 111 ~~~~~~~~lv~~vvl~l~~~w 131 (331)
T PRK10856 111 GWLMTFTWLVLFVVIGLTGAW 131 (331)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 366666666666667777767
No 27
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=29.93 E-value=1.1e+02 Score=33.20 Aligned_cols=7 Identities=14% Similarity=0.278 Sum_probs=3.3
Q ss_pred chhhhhh
Q 005351 584 LYDWWDD 590 (701)
Q Consensus 584 ~~~~~~~ 590 (701)
++.|-|-
T Consensus 86 ~~~~le~ 92 (279)
T PRK10019 86 AEPWLQL 92 (279)
T ss_pred HHHHHHH
Confidence 4455444
No 28
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=28.48 E-value=70 Score=33.69 Aligned_cols=52 Identities=25% Similarity=0.624 Sum_probs=28.3
Q ss_pred ccccceeeee--ehhhhHHHHHHHHHHHHHH---HHHHHHHHHHH--hcCC---------------cccchhhh
Q 005351 537 CSSFFDFSCH--IQYICLSWLVLFGLVLAIF---PTVLVLLWLLH--QKGL---------------FDPLYDWW 588 (701)
Q Consensus 537 C~~f~d~~C~--i~~~C~~~~~~~~l~l~~~---~~~l~~l~ll~--k~g~---------------~~~~~~~~ 588 (701)
|=..|=.++- +-|.|++-+..++++++|+ +|+.+++|++. +.|+ |.|||.|=
T Consensus 127 lFPlWP~~~r~gv~YlS~~~lgll~~~~~laivRlilf~i~w~~~~g~~~fWlfPNLfeD~Gf~eSF~Ply~~~ 200 (224)
T PF03839_consen 127 LFPLWPRWMRQGVYYLSVGALGLLGLFFALAIVRLILFLITWFFTGGKHGFWLFPNLFEDVGFFESFKPLYSWE 200 (224)
T ss_pred hhhcChHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEeCCccccccchhhheeeccccc
Confidence 3344444443 3567776555555444433 33555666665 4443 67888874
No 29
>PHA02650 hypothetical protein; Provisional
Probab=25.92 E-value=90 Score=27.87 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005351 554 WLVLFGLVLAIFPTVLVLLWL 574 (701)
Q Consensus 554 ~~~~~~l~l~~~~~~l~~l~l 574 (701)
|++.++++++++.+.++++||
T Consensus 50 ~~~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 50 QNFIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666665
No 30
>PHA03054 IMV membrane protein; Provisional
Probab=25.80 E-value=94 Score=27.21 Aligned_cols=21 Identities=14% Similarity=0.488 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005351 554 WLVLFGLVLAIFPTVLVLLWL 574 (701)
Q Consensus 554 ~~~~~~l~l~~~~~~l~~l~l 574 (701)
|++.++++++++.+.++++||
T Consensus 49 ~~~ii~l~~v~~~~l~~flYL 69 (72)
T PHA03054 49 YWLIIIFFIVLILLLLIYLYL 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444566666666666665
No 31
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=25.79 E-value=23 Score=38.51 Aligned_cols=90 Identities=17% Similarity=0.259 Sum_probs=0.0
Q ss_pred cccceeeeeehhhhHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCcccchhhhhhhccCcccccccc
Q 005351 538 SSFFDFSCHIQYICLSWLVLF---------------GLVLAIFPTVLVLLWLLHQKGLFDPLYDWWDDHFQSDNQRIRDF 602 (701)
Q Consensus 538 ~~f~d~~C~i~~~C~~~~~~~---------------~l~l~~~~~~l~~l~ll~k~g~~~~~~~~~~~~~~~~~~~~~~~ 602 (701)
++||-+.-|.-.+|+.-++.. .+-|.++.+.|.-+|+=-+.+. |..-+.|.-.....
T Consensus 134 As~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY~H~~~~~--------~e~~~dd~~~h~~~ 205 (381)
T PF05297_consen 134 ASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLYVHDQRHA--------EEHNHDDGHGHPQQ 205 (381)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------cccccccCCCCCCc
Q ss_pred cc----cccCCCCCccccccccccccccccchhcccc
Q 005351 603 RS----RRIDVDHPHVHVRKHHKQEGRHHKLEARRRR 635 (701)
Q Consensus 603 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (701)
-+ |.+..+|+|+||++++........+..|+-+
T Consensus 206 ~~~d~~hd~~~N~Nh~~HH~~vsg~GDgpP~~SQn~G 242 (381)
T PF05297_consen 206 ATDDSGHDKESNHNHHHHHHLVSGAGDGPPYVSQNGG 242 (381)
T ss_dssp -S-----------------------------------
T ss_pred CCcccCCCCCCCCCCCCCceeeccCCCCCCcccccCC
No 32
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=24.74 E-value=93 Score=27.33 Aligned_cols=21 Identities=14% Similarity=0.573 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005351 554 WLVLFGLVLAIFPTVLVLLWL 574 (701)
Q Consensus 554 ~~~~~~l~l~~~~~~l~~l~l 574 (701)
|++.++++++++.+.|+++||
T Consensus 49 ~~~ii~ii~v~ii~~l~flYL 69 (72)
T PF12575_consen 49 IILIISIIFVLIIVLLTFLYL 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666666667665
No 33
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=24.47 E-value=2.4e+02 Score=26.32 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=39.3
Q ss_pred eeecee--EEEeCCCceEEEEEEEeeccccccceEEEEEEEcCCCCceeeeEEEE
Q 005351 431 TLMEEQ--YFIIKPKETSIRSFKIYPTTNQAAKYTCSAILKDSDFSEVDRAECQF 483 (701)
Q Consensus 431 ~pI~~q--~~~I~p~~~~~~~F~I~~~s~~~~~~~C~v~L~ds~~~~lD~~~~~F 483 (701)
.||+.+ -+.+....+...+|++.-. ......|.+.-+|.++.++=++++.+
T Consensus 32 ~~v~~~~~gf~vv~d~~v~v~f~Vtr~--~~~~a~C~VrA~~~d~aeVGrreV~v 84 (112)
T PF14155_consen 32 PPVSAEVIGFEVVDDSTVEVTFDVTRD--PGRPAVCIVRALDYDGAEVGRREVLV 84 (112)
T ss_pred CCceEEEEEEEECCCCEEEEEEEEEEC--CCCCEEEEEEEEeCCCCEEEEEEEEE
Confidence 455555 4455666677777777554 66799999999999999999999888
No 34
>PHA02975 hypothetical protein; Provisional
Probab=24.32 E-value=1e+02 Score=26.77 Aligned_cols=21 Identities=14% Similarity=0.391 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005351 554 WLVLFGLVLAIFPTVLVLLWL 574 (701)
Q Consensus 554 ~~~~~~l~l~~~~~~l~~l~l 574 (701)
+++.++++++++.+++.++||
T Consensus 45 ~~~ii~i~~v~~~~~~~flYL 65 (69)
T PHA02975 45 IILIIFIIFITCIAVFTFLYL 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444566666666666665
No 35
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.83 E-value=68 Score=30.41 Aligned_cols=8 Identities=38% Similarity=0.679 Sum_probs=4.0
Q ss_pred CCCccccc
Q 005351 649 RDTDYYYY 656 (701)
Q Consensus 649 ~~~~~~~~ 656 (701)
.+..||+.
T Consensus 73 ~~~g~Yd~ 80 (130)
T PF12273_consen 73 NDPGYYDQ 80 (130)
T ss_pred CCCCCCCC
Confidence 34555554
No 36
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=22.79 E-value=2.3e+02 Score=26.85 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=17.9
Q ss_pred EEeCCCceEEEEEEEeeccc
Q 005351 438 FIIKPKETSIRSFKIYPTTN 457 (701)
Q Consensus 438 ~~I~p~~~~~~~F~I~~~s~ 457 (701)
++|+|+++....|.|.+...
T Consensus 87 Vtl~~~~sk~V~~~i~~P~~ 106 (121)
T PF06030_consen 87 VTLPPNESKTVTFTIKMPKK 106 (121)
T ss_pred EEECCCCEEEEEEEEEcCCC
Confidence 99999999999999988643
No 37
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=22.35 E-value=8.2e+02 Score=28.75 Aligned_cols=40 Identities=15% Similarity=0.045 Sum_probs=33.6
Q ss_pred EEEEEeeccccccceEEEEEEEcCCCCceeeeEEEEEeee
Q 005351 448 RSFKIYPTTNQAAKYTCSAILKDSDFSEVDRAECQFSTMA 487 (701)
Q Consensus 448 ~~F~I~~~s~~~~~~~C~v~L~ds~~~~lD~~~~~F~Tta 487 (701)
..|.|-++...+..|.=.|..+|++|...++..+.|.+++
T Consensus 367 ~~vtL~Ls~~~AG~y~Lvv~~t~~dG~~~~q~~~~~~v~~ 406 (478)
T PRK13211 367 QSVSLDLSKLKAGHHMLVVKAKPKDGELIKQQTLDFMLEA 406 (478)
T ss_pred eeEEEecccCCCceEEEEEEEEeCCCceeeeeeEEEEEEe
Confidence 4456666666788999999999999999999999999963
No 38
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=21.32 E-value=82 Score=27.57 Aligned_cols=30 Identities=20% Similarity=0.726 Sum_probs=20.4
Q ss_pred HHHHH-HHHHHHHhcCCcccchhhhhhhccCcc
Q 005351 565 FPTVL-VLLWLLHQKGLFDPLYDWWDDHFQSDN 596 (701)
Q Consensus 565 ~~~~l-~~l~ll~k~g~~~~~~~~~~~~~~~~~ 596 (701)
++|.. +++|+.-+ .+.|+.+|..|.+++--
T Consensus 29 ipI~pll~~~~i~~--~~E~l~e~Y~~~~w~~F 59 (72)
T PF13198_consen 29 IPISPLLFVWIIGK--IIEPLFELYKDWFWNPF 59 (72)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhH
Confidence 55544 44444444 89999999999888743
No 39
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=20.26 E-value=6.1e+02 Score=22.43 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=26.1
Q ss_pred eeeEEEEEEcCCCC--eeeceeEEEeCCCceEEEEEEEeeccc
Q 005351 417 EASYSLTFDCSTGV--TLMEEQYFIIKPKETSIRSFKIYPTTN 457 (701)
Q Consensus 417 ~A~Y~v~vnCS~~I--~pI~~q~~~I~p~~~~~~~F~I~~~s~ 457 (701)
...|.+.+.-.... .....+.+.|+|+++|.++|.++....
T Consensus 33 ~g~~~l~v~~~~~~~~~~~~~~~~~l~~G~~Y~~s~~vk~~~~ 75 (131)
T PF02018_consen 33 SGNYSLKVSNRSATWDGQSQQQTISLKPGKTYTVSFWVKADSG 75 (131)
T ss_dssp SSSEEEEEECCSSGCGEEEEEEEEEE-TTSEEEEEEEEEESSS
T ss_pred CCeEEEEEECCCCCccccceecceEecCCCEEEEEEEEEeCCC
Confidence 55566666433321 122344579999999999999988755
Done!