Query 005351
Match_columns 701
No_of_seqs 92 out of 94
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 22:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3idu_A Uncharacterized protein 89.7 3.3 0.00011 38.2 11.5 80 391-475 22-102 (127)
2 2l8s_A Integrin alpha-1; trans 88.2 0.4 1.4E-05 38.3 3.7 28 554-582 10-37 (54)
3 1p58_A Major envelope protein 84.8 22 0.00074 39.8 16.4 103 146-257 87-202 (495)
4 1ok8_A Major envelope protein 83.1 22 0.00074 38.7 15.1 103 146-257 87-202 (394)
5 4grv_A Neurotensin receptor ty 80.0 0.85 2.9E-05 49.8 3.1 25 571-595 455-480 (510)
6 1svb_A TICK-borne encephalitis 78.3 46 0.0016 36.2 15.6 104 146-258 87-204 (395)
7 2l0d_A Cell surface protein; s 68.0 31 0.0011 31.1 9.7 71 401-475 18-90 (114)
8 1uzg_A Major envelope protein 65.8 37 0.0013 36.9 11.3 103 146-258 87-201 (392)
9 3no8_A BTB/POZ domain-containi 65.1 93 0.0032 30.3 13.0 89 412-503 71-163 (176)
10 4gsx_A Envelope protein E; vir 63.0 1.1E+02 0.0038 33.6 14.4 103 146-257 103-218 (427)
11 2z83_A Helicase/nucleoside tri 61.0 1.2 4.2E-05 48.5 -1.2 31 586-616 429-459 (459)
12 3uau_A JLPA, surface-exposed l 59.9 1.9 6.4E-05 44.7 0.0 9 611-619 3-11 (379)
13 2r39_A FIXG-related protein; s 58.0 1E+02 0.0034 27.3 12.1 51 406-456 35-85 (118)
14 1ydx_A Type I restriction enzy 57.4 2.2 7.5E-05 45.0 0.0 17 610-626 2-18 (406)
15 2yjp_A Putative ABC transporte 57.3 2.2 7.6E-05 42.5 0.0 11 611-621 3-13 (291)
16 2ys4_A Hydrocephalus-inducing 56.1 25 0.00084 31.3 6.8 51 403-456 42-92 (122)
17 3p54_A Envelope glycoprotein; 54.3 2.5E+02 0.0084 30.7 15.2 103 146-257 87-207 (406)
18 3qbt_B Inositol polyphosphate 53.9 21 0.00071 33.0 6.0 52 404-456 45-102 (140)
19 3zyz_A Beta-D-glucoside glucoh 50.2 23 0.00079 41.3 7.0 51 405-455 616-674 (713)
20 2es4_D Lipase chaperone; prote 48.2 3.8 0.00013 43.7 0.0 10 611-620 2-11 (332)
21 2qjy_B Cytochrome C1; cytochro 45.7 8.6 0.00029 39.9 2.2 13 566-578 238-250 (269)
22 1jr2_A Uroporphyrinogen-III sy 44.9 4.6 0.00016 41.1 0.0 13 611-623 3-15 (286)
23 2hr0_B Complement C3 alpha' ch 44.3 2E+02 0.0068 34.2 13.9 97 388-486 81-184 (915)
24 3tla_A MCCF; serine protease, 42.7 5.2 0.00018 43.2 0.0 13 657-669 27-39 (371)
25 3uaj_B Envelope protein; dengu 42.3 1.5E+02 0.0051 32.6 11.3 104 146-258 87-203 (433)
26 3b9f_I Protein C inhibitor; mi 41.9 5.4 0.00019 43.0 0.0 17 610-626 2-18 (395)
27 1d1d_A Protein (capsid protein 41.8 5.4 0.00019 41.2 0.0 14 611-624 2-15 (262)
28 3hrz_B Cobra venom factor; ser 40.6 2.9E+02 0.01 27.6 14.0 96 388-485 82-183 (252)
29 4fg0_A Polyprotein; viral enve 40.1 2.1E+02 0.0072 31.2 11.9 103 146-257 87-207 (407)
30 2px7_A 2-C-methyl-D-erythritol 39.7 6.1 0.00021 38.8 0.0 11 611-621 3-13 (236)
31 3a5i_A Flagellar biosynthesis 39.5 6.2 0.00021 42.9 0.0 10 611-620 3-12 (389)
32 1uoz_A Putative cellulase; hyd 38.9 6.7 0.00023 41.5 0.2 10 611-620 3-12 (315)
33 2c0d_A Thioredoxin peroxidase 38.9 6.4 0.00022 38.7 0.0 10 611-620 3-12 (221)
34 3odm_A Pepcase, PEPC, phosphoe 38.3 6.7 0.00023 44.4 0.0 11 611-621 3-13 (560)
35 4axs_A Carbamate kinase; oxido 38.0 6.8 0.00023 41.7 0.0 7 676-682 132-138 (332)
36 2r9r_B Paddle chimera voltage 36.1 7.6 0.00026 43.4 0.0 16 611-626 3-18 (514)
37 2axq_A Saccharopine dehydrogen 35.9 7.6 0.00026 42.9 0.0 10 611-620 3-12 (467)
38 2kut_A Uncharacterized protein 35.5 22 0.00074 32.7 2.9 75 401-476 15-99 (122)
39 3etc_A AMP-binding protein; ad 34.5 8.3 0.00028 43.0 0.0 10 611-620 3-12 (580)
40 2k1a_A Integrin alpha-IIB; sin 34.1 55 0.0019 24.7 4.4 28 554-582 11-38 (42)
41 2x41_A Beta-glucosidase; hydro 33.8 33 0.0011 40.0 4.9 51 405-455 618-677 (721)
42 3qis_A Inositol polyphosphate 33.8 56 0.0019 34.7 6.3 70 405-474 49-130 (366)
43 3abz_A Beta-glucosidase I; gly 33.8 53 0.0018 39.1 6.6 49 405-453 738-795 (845)
44 2qrj_A Saccharopine dehydrogen 33.3 9 0.00031 41.8 0.0 11 611-621 3-13 (394)
45 3k9f_C DNA topoisomerase 4 sub 33.1 9 0.00031 39.6 0.0 10 611-620 3-12 (268)
46 2pn5_A TEP1R, thioester-contai 32.5 4E+02 0.014 32.9 14.4 96 388-485 666-770 (1325)
47 2knc_A Integrin alpha-IIB; tra 31.8 36 0.0012 27.1 3.2 28 554-582 13-40 (54)
48 1wuf_A Hypothetical protein LI 31.5 10 0.00034 40.7 0.0 14 611-624 2-15 (393)
49 2xci_A KDO-transferase, 3-deox 30.6 11 0.00037 39.7 0.1 10 611-620 3-12 (374)
50 1k8w_A TRNA pseudouridine synt 30.3 11 0.00037 40.2 0.0 9 611-619 3-11 (327)
51 4b1m_A Levanase; hydrolase, CB 30.0 11 0.00037 36.2 0.0 10 611-620 3-12 (185)
52 4e4j_A Arginine deiminase; L-a 29.8 11 0.00038 41.1 0.0 10 611-620 3-12 (433)
53 3pnr_B Pbicp-C; immunoglobulin 29.8 11 0.00038 36.0 0.0 18 649-666 63-80 (187)
54 2apo_A Probable tRNA pseudouri 29.6 11 0.00039 40.5 0.0 10 611-620 3-12 (357)
55 3tr9_A Dihydropteroate synthas 29.4 11 0.00039 39.8 0.0 15 318-332 48-62 (314)
56 1wue_A Mandelate racemase/muco 29.4 11 0.00039 40.1 0.0 14 611-624 2-15 (386)
57 3vta_A Cucumisin; subtilisin-l 29.2 2.5E+02 0.0086 31.8 11.1 53 401-453 536-590 (621)
58 2xwx_A GBPA, glcnac-binding pr 29.0 5.8E+02 0.02 27.6 13.2 50 435-486 341-390 (391)
59 2kw0_A CCMH protein; oxidoredu 28.8 16 0.00056 31.9 0.9 37 575-614 52-89 (90)
60 2bu3_A ALR0975 protein; phytoc 28.5 12 0.00041 38.5 0.0 22 602-625 6-27 (254)
61 3tut_A RNA 3'-terminal phospha 28.1 12 0.00042 40.2 0.0 10 611-620 2-11 (358)
62 2b39_A C3; thioester, immune d 27.9 5E+02 0.017 33.0 14.4 82 388-471 828-916 (1661)
63 3aqp_A Probable secdf protein- 26.8 18 0.00061 42.3 1.0 12 578-589 713-724 (741)
64 1qwz_A NPQTN specific sortase 26.7 21 0.0007 36.1 1.3 10 611-620 2-11 (235)
65 3tq8_A Dihydrofolate reductase 26.4 18 0.00061 35.1 0.8 6 610-615 168-173 (178)
66 2x7q_A Ca3427, possible thiami 26.3 14 0.00049 37.4 0.1 10 611-620 3-12 (321)
67 2v50_A Multidrug resistance pr 26.3 39 0.0013 40.8 3.9 11 605-615 1040-1050(1052)
68 3dl8_E Protein-export membrane 26.1 26 0.00089 31.5 1.7 20 596-615 87-106 (107)
69 3rce_A Oligosaccharide transfe 25.3 16 0.00054 42.9 0.2 9 578-586 693-701 (724)
70 3ga4_A Dolichyl-diphosphooligo 24.5 20 0.00068 34.7 0.7 13 388-400 19-31 (178)
71 2ygr_A Uvrabc system protein A 24.1 16 0.00055 44.2 0.0 12 675-686 35-46 (993)
72 2e6j_A Hydin protein; PAPD, st 24.1 95 0.0032 26.4 5.0 50 405-454 29-80 (112)
73 4hg6_A Cellulose synthase subu 23.1 17 0.0006 42.6 0.0 14 607-620 785-798 (802)
74 2p9r_A Alpha-2-M, alpha-2-macr 23.1 2E+02 0.0068 24.2 6.8 66 439-510 12-78 (102)
75 3i6s_A Subtilisin-like proteas 22.9 5.5E+02 0.019 29.3 12.4 72 404-475 560-634 (649)
76 3fn9_A Putative beta-galactosi 22.7 9.1E+02 0.031 27.7 15.6 85 406-491 191-285 (692)
77 3k4z_A Glycoside hydrolase fam 22.5 3.1E+02 0.011 28.1 9.4 50 396-456 46-95 (289)
78 2l7q_A Conserved protein found 21.4 24 0.00083 32.4 0.6 35 439-473 22-57 (124)
79 4amu_A Ornithine carbamoyltran 20.9 21 0.0007 38.6 0.0 9 645-653 31-39 (365)
80 3c3r_A Programmed cell death 6 20.7 21 0.00071 38.3 0.0 8 653-660 92-99 (380)
81 3a4u_B Multiple coagulation fa 20.6 21 0.00072 32.2 0.0 23 611-633 3-25 (143)
82 1tyg_B YJBS; alpha beta barrel 20.4 21 0.00073 30.7 0.0 9 611-619 3-11 (87)
83 2pi2_E Replication protein A 1 20.3 22 0.00074 33.5 0.0 10 611-620 3-12 (142)
No 1
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=89.67 E-value=3.3 Score=38.21 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=50.7
Q ss_pred EEEccccccccceeEEEEEEEecCcee-eeEEEEEEcCCCCeeeceeEEEeCCCceEEEEEEEeeccccccceEEEEEEE
Q 005351 391 SVIIPTFEALTQFGVATITTQNTGEVE-ASYSLTFDCSTGVTLMEEQYFIIKPKETSIRSFKIYPTTNQAAKYTCSAILK 469 (701)
Q Consensus 391 sv~v~~FEA~S~~G~L~V~V~N~G~~~-A~Y~v~vnCS~~I~pI~~q~~~I~p~~~~~~~F~I~~~s~~~~~~~C~v~L~ 469 (701)
++..|.--...+...+.|+|+|.|... ..|.|.+ ..+=..+..+.+.|.|+++.+++|..... .+..+.=.|. .
T Consensus 22 ~is~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~l--yvng~~v~t~~v~La~G~s~tv~f~~~~~--~~G~~~v~Av-V 96 (127)
T 3idu_A 22 EIKGPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRV--YINGTLYKNWTVSLGPKEEKVLTFNWTPT--QEGMYRINAT-V 96 (127)
T ss_dssp EEESCSEECTTCCEEEEEEEEECSSSCEEEEEEEE--EETTEEEEEEEEEECTTCEEEEEEEECCS--SCEEEEEEEE-E
T ss_pred EecCCCcccCCCEEEEEEEEEECCCCccCCcEEEE--EECCEEEeeEEeccCCCCeEEEEEEEEcC--CCcEEEEEEE-E
Confidence 444443223456678999999999775 5566664 33444566667789999999999988643 2333333333 2
Q ss_pred cCCCCc
Q 005351 470 DSDFSE 475 (701)
Q Consensus 470 ds~~~~ 475 (701)
|+...+
T Consensus 97 D~~n~I 102 (127)
T 3idu_A 97 DEENTV 102 (127)
T ss_dssp STTCCS
T ss_pred cCCCcE
Confidence 555543
No 2
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=88.18 E-value=0.4 Score=38.27 Aligned_cols=28 Identities=21% Similarity=0.681 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 005351 554 WLVLFGLVLAIFPTVLVLLWLLHQKGLFD 582 (701)
Q Consensus 554 ~~~~~~l~l~~~~~~l~~l~ll~k~g~~~ 582 (701)
|++..+.+.+++ ...++++.|.|.|+|.
T Consensus 10 WiIi~svl~GLL-LL~Lii~~LwK~GFFK 37 (54)
T 2l8s_A 10 WVILLSAFAGLL-LLMLLILALWKIGFFK 37 (54)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHcCccc
Confidence 554444444333 3334566777999984
No 3
>1p58_A Major envelope protein E; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=84.84 E-value=22 Score=39.76 Aligned_cols=103 Identities=17% Similarity=0.267 Sum_probs=68.1
Q ss_pred CCceeeeCCCCCc-ccCcccccccccccCCcceeeeeccc-CCeeEEEeeccceeEEEEEEEEEEcceE----------e
Q 005351 146 RQPICCPCGPQRR-IPSSCGNVFDKLLKGKANTAHCLRFP-GDWFHVFGIGQRSIGFSVRIEVKTGSKV----------S 213 (701)
Q Consensus 146 sQGfCC~C~~~~r-~~~~Cg~~~~~l~~g~~~SAHCLrf~-~~WY~vy~I~~~~i~y~I~VtI~~gss~----------~ 213 (701)
...+-|.=+..+| +..-||-| |+-+=.-|.+|. .--+.++.|++..|.|+|.|++-.+... .
T Consensus 87 d~~~vCKr~~~DRGWGNGCgLF------GKGSIvTCakF~C~k~~~g~~i~~enI~y~V~v~vH~~~~~~~g~~~~~~~~ 160 (495)
T 1p58_A 87 DKRFVCKHSMVDRGWGNGCGLF------GKGGIVTCAMFTCKKNMEGKIVQPENLEYTVVITPHSGEEHAVGNDTGKHGK 160 (495)
T ss_pred cCCceecCCCcCCccccccccc------cCcceeeeeeeeccCcccEEEeecceEEEEEEEEEecCcccccccccccccc
Confidence 3556677777777 58888644 677778888888 6678999999999999999999754321 1
Q ss_pred EEEEcCCCcceeecCCcE-EEEEeecccCCCCCCCccccEEEeeC
Q 005351 214 EVTVGPENKTATSADNFL-KVNLIGDFVGYTNIPSFEEFYLVIPR 257 (701)
Q Consensus 214 ~v~Lgp~~~~~~s~d~~l-~~~LiGDf~~~~~~p~l~~~yLliPs 257 (701)
+.+++|+.+...-+-.+. .+.|-=. .++-.||++.|++...
T Consensus 161 ~~~~Tp~s~~~t~~lgdYG~vtl~C~---~rSg~D~~~yyv~t~g 202 (495)
T 1p58_A 161 EVKITPQSSITEAELTGYGTVTMECS---PRTGLDFNEMVLLQMK 202 (495)
T ss_pred eeEEecCCCcEEEEcCCCcEEEEEEE---eccCcccccEEEEEcC
Confidence 346676654333221111 1222211 3466889999998775
No 4
>1ok8_A Major envelope protein E; viral protein, membrane fusion, flavivirus, fusion peptide, low-PH conformational change, class 2 fusion protein,; HET: NAG; 2.0A {Dengue virus type 2} SCOP: b.1.18.4 f.10.1.1 PDB: 1oan_A* 1oke_A* 2b6b_A 1tge_A 1tg8_A* 1thd_A 3c5x_A* 3c6e_A* 3c6d_A 3c6r_A 3ixy_A 3iya_A 2r6p_A 2jsf_A 2r29_A 2r69_A
Probab=83.13 E-value=22 Score=38.73 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=65.8
Q ss_pred CCceeeeCCCCCc-ccCcccccccccccCCcceeeeeccc-CCeeEEEeeccceeEEEEEEEEEEcceE----------e
Q 005351 146 RQPICCPCGPQRR-IPSSCGNVFDKLLKGKANTAHCLRFP-GDWFHVFGIGQRSIGFSVRIEVKTGSKV----------S 213 (701)
Q Consensus 146 sQGfCC~C~~~~r-~~~~Cg~~~~~l~~g~~~SAHCLrf~-~~WY~vy~I~~~~i~y~I~VtI~~gss~----------~ 213 (701)
...+-|.=+..+| +..-||-| |+-+=.-|.+|. .--+.++.|++..|.|+|.|++-.++.. .
T Consensus 87 ~~~~vCKr~~~DRGWGNGCgLF------GKGSIvtCakFtC~k~~~g~~i~~enI~y~V~v~vH~~~~~~~~~~~~~~~~ 160 (394)
T 1ok8_A 87 DKRFVCKHSMVDRGWGNGCGLF------GKGGIVTCAMFTCKKNMEGKIVQPENLEYTVVITPHSGEEHAVGNDTGKHGK 160 (394)
T ss_dssp CTTEEEEEEEEEECGGGTCSSC------EEEEEEEEEEEEEEEEEEEEECCGGGEEEEEEEEEC--------------CE
T ss_pred cCCceecCCCCCCCcccccccc------cCcceeeeeeeeccCcccEEEEecccEEEEEEEEEccCcccccccccccccc
Confidence 3556666666666 57888644 666677788777 5678999999999999999999653211 2
Q ss_pred EEEEcCCCcceeecCCc-EEEEEeecccCCCCCCCccccEEEeeC
Q 005351 214 EVTVGPENKTATSADNF-LKVNLIGDFVGYTNIPSFEEFYLVIPR 257 (701)
Q Consensus 214 ~v~Lgp~~~~~~s~d~~-l~~~LiGDf~~~~~~p~l~~~yLliPs 257 (701)
+..++|+.+...-+-.+ =.+.|-=. .++-.||++.|+|...
T Consensus 161 ~~~~Tp~s~~~t~~lgdyG~vtl~C~---~~Sg~D~~~yyv~t~~ 202 (394)
T 1ok8_A 161 EVKITPQSSITEAELTGYGTVTMECS---PRTGLDFNEMVLLQMK 202 (394)
T ss_dssp EEEECSSCCEEEEEETTTEEEEEEEE---ECSCCCTTTEEEEEET
T ss_pred eeEEecCCCcEEEEcCCCcEEEEEEE---eccCcccccEEEEEcC
Confidence 45777776533222111 01222222 3467889999998876
No 5
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=80.02 E-value=0.85 Score=49.83 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=12.7
Q ss_pred HHHHHHhcCCcccc-hhhhhhhccCc
Q 005351 571 LLWLLHQKGLFDPL-YDWWDDHFQSD 595 (701)
Q Consensus 571 ~l~ll~k~g~~~~~-~~~~~~~~~~~ 595 (701)
..||.+=+..+.|| |-+-...|-..
T Consensus 455 ~~~L~Y~NS~iNPiIY~~~n~~FR~a 480 (510)
T 4grv_A 455 TNALAYASSAINPILYNLVSANFRQV 480 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34455555566674 44444444443
No 6
>1svb_A TICK-borne encephalitis virus glycoprotein; viral protein; HET: NAG; 1.90A {Tick-borne encephalitis virus} SCOP: b.1.18.4 f.10.1.1 PDB: 1k4r_A 1na4_A 1n6g_A* 1urz_A 1z3r_A 2gg1_A 1z66_A
Probab=78.27 E-value=46 Score=36.19 Aligned_cols=104 Identities=14% Similarity=0.199 Sum_probs=69.8
Q ss_pred CCceeeeCCCCCc-ccCcccccccccccCCcceeeeeccc---CCeeEEEeeccceeEEEEEEEEEEcceE---------
Q 005351 146 RQPICCPCGPQRR-IPSSCGNVFDKLLKGKANTAHCLRFP---GDWFHVFGIGQRSIGFSVRIEVKTGSKV--------- 212 (701)
Q Consensus 146 sQGfCC~C~~~~r-~~~~Cg~~~~~l~~g~~~SAHCLrf~---~~WY~vy~I~~~~i~y~I~VtI~~gss~--------- 212 (701)
...+-|.=+..+| +..-||-| |+-+=.-|.+|. .--+.++.|++..|.|+|.|++-.+...
T Consensus 87 d~~~vCKr~~~DRGWGNGCgLF------GKGSIvtCakftC~~~k~~~g~~i~~enI~y~V~v~vH~~~~~~~n~~~~~~ 160 (395)
T 1svb_A 87 QGGTVCKRDQSDRGWGNHCGLF------GKGSIVACVKAACEAKKKATGHVYDANKIVYTVKVEPHTGDYVAANETHSGR 160 (395)
T ss_dssp STTEEEEEEEEEESGGGTCSSC------EEEEEEEEEEEEECTTCEEEEEECCTTTCEEEEEEEECCSCCCCTTSCCTTC
T ss_pred cCCeeeccCCccCccccccccc------cCcceEeeeeEEecCCCcceEEEEeeceEEEEEEEEEccccccccccccccc
Confidence 3556666666666 57888644 677778888887 4678999999999999999999764311
Q ss_pred eEEEEcCCCcceeecCCcE-EEEEeecccCCCCCCCccccEEEeeCC
Q 005351 213 SEVTVGPENKTATSADNFL-KVNLIGDFVGYTNIPSFEEFYLVIPRQ 258 (701)
Q Consensus 213 ~~v~Lgp~~~~~~s~d~~l-~~~LiGDf~~~~~~p~l~~~yLliPs~ 258 (701)
.+..++|+.+...-+-.+. .+.|-=. .++-.||++.|+|....
T Consensus 161 ~~~~~t~~s~~~t~~lg~yG~vtl~C~---~~Sg~D~~~~yv~~~~~ 204 (395)
T 1svb_A 161 KTASFTISSEKTILTMGEYGDVSLLCR---VASGVDLAQTVILELDK 204 (395)
T ss_dssp EEEEEBTTBCEEEEECGGGBEEEEEEE---GGGSCCCTTEEEEESCT
T ss_pred ceEEEecCCCcEEEEcCCCcEEEEEEE---eccCcccccEEEEEccC
Confidence 2557887776333221110 1222211 34678999999998765
No 7
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=68.01 E-value=31 Score=31.11 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=45.3
Q ss_pred cceeEEEEEEEecCcee-eeEEEEEEcCCCCeeeceeEE-EeCCCceEEEEEEEeeccccccceEEEEEEEcCCCCc
Q 005351 401 TQFGVATITTQNTGEVE-ASYSLTFDCSTGVTLMEEQYF-IIKPKETSIRSFKIYPTTNQAAKYTCSAILKDSDFSE 475 (701)
Q Consensus 401 S~~G~L~V~V~N~G~~~-A~Y~v~vnCS~~I~pI~~q~~-~I~p~~~~~~~F~I~~~s~~~~~~~C~v~L~ds~~~~ 475 (701)
.....++|+|+|.|... +.|.|.+. .+-+.+..+.+ .|.|+.+.+.+|...... .++.|.=++.+ |....+
T Consensus 18 ~~~~ti~atVkN~G~~~a~~~~V~ly--~~g~~v~t~~v~~LaaG~s~tv~~~w~~~~-~~G~ytl~a~V-D~~n~i 90 (114)
T 2l0d_A 18 NTVNTMTATIENQGNKDSTSFNVSLL--VDGIVVDTQTVTSLESENSTNVDFHWTLDG-TANSYTLTVNV-DPENAV 90 (114)
T ss_dssp TSEEEEEEEEEECSSSCBCCEEEEEE--ETTEEEEEEEESCBCBTCEEEEEEEEECCC-SCSEEEEEEEE-CTTCSS
T ss_pred CCeEEEEEEEEECCCCCCCCEEEEEE--ECCEEEcceecccccCCCEEEEEEEEeecC-cCceEEEEEEE-CCCCce
Confidence 45568999999999865 45776653 23345655555 588999988888765432 14455544443 555544
No 8
>1uzg_A Major envelope protein E; viral protein, membrane fusion, flavivirus, fusion loop, CLA fusion protein, glycoprotein; HET: NAG FUL BMA MAN; 3.50A {Dengue virus type 3} PDB: 3g7t_A
Probab=65.82 E-value=37 Score=36.92 Aligned_cols=103 Identities=19% Similarity=0.274 Sum_probs=69.0
Q ss_pred CCceeeeCCCCCc-ccCcccccccccccCCcceeeeeccc-CCeeEEEeeccceeEEEEEEEEEEcc--e------EeEE
Q 005351 146 RQPICCPCGPQRR-IPSSCGNVFDKLLKGKANTAHCLRFP-GDWFHVFGIGQRSIGFSVRIEVKTGS--K------VSEV 215 (701)
Q Consensus 146 sQGfCC~C~~~~r-~~~~Cg~~~~~l~~g~~~SAHCLrf~-~~WY~vy~I~~~~i~y~I~VtI~~gs--s------~~~v 215 (701)
...+=|.=+..+| +..-||-| |+-+=.-|.+|. .--+.++.|++..|.|+|.|++-.+. + ..+.
T Consensus 87 ~~~~vCKr~~~DRGWGNGCgLF------GKGSIvtCakF~C~k~~~g~~i~~enI~y~V~v~vH~~~~~~~~~~~~~~~~ 160 (392)
T 1uzg_A 87 DQNYVCKHTYVDRGWGNGCGLF------GKGSLVTCAKFQCLESIEGKIVQHENLKYTVIITVHTGDQHQVGNETQGVTA 160 (392)
T ss_dssp CSSEEEEEEEEEECTTTTCSSC------EEEEEEEEEEEEESSBCEEEECCSTTBEEEEEEEECCCCSSCTTCSSSCEEE
T ss_pred cCCcEeccCCccCccccccccc------cCcceEEEeeeeecCcccEEEeeeeeEEEEEEEEEecCcccccCCccccceE
Confidence 3556666666666 57888644 677777888887 67789999999999999999997543 1 1145
Q ss_pred EEcCCCcceee--cCCcEEEEEeecccCCCCCCCccccEEEeeCC
Q 005351 216 TVGPENKTATS--ADNFLKVNLIGDFVGYTNIPSFEEFYLVIPRQ 258 (701)
Q Consensus 216 ~Lgp~~~~~~s--~d~~l~~~LiGDf~~~~~~p~l~~~yLliPs~ 258 (701)
+++|+.+...- .+. =.+.|-=. .++-.||++.|||....
T Consensus 161 ~~Tp~s~~~t~~~gdy-G~vtl~C~---~~Sg~D~~~yyv~t~~~ 201 (392)
T 1uzg_A 161 EITSQASTAEAILPEY-GTLGLECS---PRTGLDFNEMILLTMKD 201 (392)
T ss_dssp EEETTSCEEEEEETTT-EEEEEECB---CCCSSCTTSEEEEEETT
T ss_pred EEecCCCcEEEEcCCC-cEEEEEEE---eccCcccccEEEEEcCC
Confidence 77777663322 221 12222222 35778999999988763
No 9
>3no8_A BTB/POZ domain-containing protein 2; PHR domain, BTBD1, BTBD2, PAM-highwire-RPM-1 domain, toposis regulation, protein structure initiative; 2.20A {Homo sapiens}
Probab=65.07 E-value=93 Score=30.27 Aligned_cols=89 Identities=11% Similarity=0.101 Sum_probs=51.8
Q ss_pred ecCceeeeEEEEEEcC--CCCeee-ceeEEEeCCCceEEEEEEEeeccc-cccceEEEEEEEcCCCCceeeeEEEEEeee
Q 005351 412 NTGEVEASYSLTFDCS--TGVTLM-EEQYFIIKPKETSIRSFKIYPTTN-QAAKYTCSAILKDSDFSEVDRAECQFSTMA 487 (701)
Q Consensus 412 N~G~~~A~Y~v~vnCS--~~I~pI-~~q~~~I~p~~~~~~~F~I~~~s~-~~~~~~C~v~L~ds~~~~lD~~~~~F~Tta 487 (701)
..|++-++-...+.|- ..+..| =++-+.|.|+..++..-.|+-... -+.+..=.|+.=... ..|...|+|...
T Consensus 71 ~~~~vL~~~~~~f~~dgs~~~~~v~F~~PV~I~pn~~Yta~a~l~G~~S~~G~~G~~~V~~~~~~--~~~~v~F~F~~s- 147 (176)
T 3no8_A 71 DSNTVLGQNDTGFSCDGSASTFRVMFKEPVEVLPNVNYTACATLKGPDSHYGTKGMRKVTHESPT--TGAKTCFTFCYA- 147 (176)
T ss_dssp TTTEEEEEEEEEEEECSCSCEEEEEEEEEEEECTTCCEEEEEEEESSCEEEEESCCSEEEEECTT--TCCEEEEEEECC-
T ss_pred CCCcEEEEcceeeecCCCCceEEEEcCCCeEcCCCCeEEEEEEeCCCccccCCCCceeEEecCCC--cCCceEEEEEeC-
Confidence 4555555545556663 355544 466789999999988877764321 111111111110000 125667888775
Q ss_pred eeecCCcccccCCCCC
Q 005351 488 TVLDNGSQITPFQPPK 503 (701)
Q Consensus 488 T~~~nG~q~~~~~~~~ 503 (701)
..=+|||.+...|.|+
T Consensus 148 ~~snNGT~v~~GQIPe 163 (176)
T 3no8_A 148 AGNNNGTSVEDGQIPE 163 (176)
T ss_dssp CSSSTTCCSSSBSCCE
T ss_pred CCCCCCCcccCCccce
Confidence 4458999988888876
No 10
>4gsx_A Envelope protein E; viral fusion protein, viral protein; HET: NAG; 1.90A {Dengue virus 1} PDB: 4gt0_A* 3g7t_A 3j05_A 1uzg_A*
Probab=62.99 E-value=1.1e+02 Score=33.60 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=66.2
Q ss_pred CCceeeeCCCCCc-ccCcccccccccccCCcceeeeecccCC-eeEEEeeccceeEEEEEEEEEEcce----------Ee
Q 005351 146 RQPICCPCGPQRR-IPSSCGNVFDKLLKGKANTAHCLRFPGD-WFHVFGIGQRSIGFSVRIEVKTGSK----------VS 213 (701)
Q Consensus 146 sQGfCC~C~~~~r-~~~~Cg~~~~~l~~g~~~SAHCLrf~~~-WY~vy~I~~~~i~y~I~VtI~~gss----------~~ 213 (701)
...+-|.=+..+| +..-||-| |+-+-.-|.+|.=. -+.++.|++-.|.|+|.|+|-.++. ..
T Consensus 103 ~~~~vCKr~~~DRGWGNGCgLF------GKGsivtCaKftC~k~~~g~~i~~enI~Y~V~v~vH~~~~~~~~n~t~~~~~ 176 (427)
T 4gsx_A 103 DTNFVCRRTFVDRGHGNGCGLF------GKGSLITCAKFKCVTKLEGKIVQYENLKYSVIVTVHTGDQHQVGNETTEHGT 176 (427)
T ss_dssp CTTEEEEEEEEEECGGGTCSSC------EEEEEEEEEEEEEEEEEEEEECCGGGEEEEEEEEECCC------------CE
T ss_pred cCCceecCCCCcCCcccccccc------cCcceEEEEEEEcCCcceEEEEeeeeEEEEEEEEEecCcccccCCcccccCc
Confidence 3556666666666 57888644 56556667776653 6899999999999999999974321 12
Q ss_pred EEEEcCCCcceeecCCcE-EEEEeecccCCCCCCCccccEEEeeC
Q 005351 214 EVTVGPENKTATSADNFL-KVNLIGDFVGYTNIPSFEEFYLVIPR 257 (701)
Q Consensus 214 ~v~Lgp~~~~~~s~d~~l-~~~LiGDf~~~~~~p~l~~~yLliPs 257 (701)
++++.|+.+...-+-.+. .+.|-=. .++-.||++.|||...
T Consensus 177 ~~~fTp~s~~~t~~~gdYG~vtl~C~---~rSgvD~~~~Yvvt~~ 218 (427)
T 4gsx_A 177 IATITPQAPTSEIQLTDYGALTLDCS---PRTGLDFNEMVLLTME 218 (427)
T ss_dssp EEEECSSCCEEEEEETTTEEEEEEEE---ECSCCCTTTEEEEEET
T ss_pred eEEEecCCCcEEEEcCCceEEEEEEe---eccCcChhhEEEEEeC
Confidence 377888875433321111 1222211 2567889999999875
No 11
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=60.98 E-value=1.2 Score=48.53 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=20.9
Q ss_pred hhhhhhccCcccccccccccccCCCCCcccc
Q 005351 586 DWWDDHFQSDNQRIRDFRSRRIDVDHPHVHV 616 (701)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (701)
.|+++++-.|.+.+++...+-.+++||||||
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (459)
T 2z83_A 429 RWLDARVYADHQALKWFKDFAAGKRHHHHHH 459 (459)
T ss_dssp SSEEGGGGSSHHHHHHHHHHHHTC-------
T ss_pred eEeehhhccccccHHHHHHHhccccccccCC
Confidence 5999999999999888888788888877763
No 12
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=59.92 E-value=1.9 Score=44.74 Aligned_cols=9 Identities=44% Similarity=0.744 Sum_probs=0.0
Q ss_pred CCccccccc
Q 005351 611 HPHVHVRKH 619 (701)
Q Consensus 611 ~~~~~~~~~ 619 (701)
||||||++|
T Consensus 3 ~~~~~~~~~ 11 (379)
T 3uau_A 3 HHHHHHHHH 11 (379)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 444443333
No 13
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=57.99 E-value=1e+02 Score=27.28 Aligned_cols=51 Identities=16% Similarity=0.166 Sum_probs=38.0
Q ss_pred EEEEEEecCceeeeEEEEEEcCCCCeeeceeEEEeCCCceEEEEEEEeecc
Q 005351 406 ATITTQNTGEVEASYSLTFDCSTGVTLMEEQYFIIKPKETSIRSFKIYPTT 456 (701)
Q Consensus 406 L~V~V~N~G~~~A~Y~v~vnCS~~I~pI~~q~~~I~p~~~~~~~F~I~~~s 456 (701)
-++.+.|...-+-.|.+++.=-.++....++.+.++|++.....+.+.+..
T Consensus 35 Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 35 YTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEECG
T ss_pred EEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEECh
Confidence 468899999999999999864455554444569999999977766665543
No 14
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=57.36 E-value=2.2 Score=45.01 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCcccccccccccccc
Q 005351 610 DHPHVHVRKHHKQEGRH 626 (701)
Q Consensus 610 ~~~~~~~~~~~~~~~~~ 626 (701)
+||||||++||..+|-.
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (406)
T 1ydx_A 2 GHHHHHHHHHHSSGHID 18 (406)
T ss_dssp -----------------
T ss_pred CccccccccccccCCcC
Confidence 35555545555544444
No 15
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=57.26 E-value=2.2 Score=42.48 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=0.0
Q ss_pred CCccccccccc
Q 005351 611 HPHVHVRKHHK 621 (701)
Q Consensus 611 ~~~~~~~~~~~ 621 (701)
||||||++||.
T Consensus 3 ~~~~~~~~~~~ 13 (291)
T 2yjp_A 3 HHHHHHHHHHS 13 (291)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 44444344443
No 16
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.14 E-value=25 Score=31.25 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=40.3
Q ss_pred eeEEEEEEEecCceeeeEEEEEEcCCCCeeeceeEEEeCCCceEEEEEEEeecc
Q 005351 403 FGVATITTQNTGEVEASYSLTFDCSTGVTLMEEQYFIIKPKETSIRSFKIYPTT 456 (701)
Q Consensus 403 ~G~L~V~V~N~G~~~A~Y~v~vnCS~~I~pI~~q~~~I~p~~~~~~~F~I~~~s 456 (701)
....++.++|+|.+.+.|.+.. ....-|+...-.|.|++.....+.+....
T Consensus 42 ~~~~~~~l~N~g~~~~~f~~~~---~~~F~i~P~~g~L~pg~~~~i~V~F~P~~ 92 (122)
T 2ys4_A 42 STQKILLVRNIGNKNAVFHIKT---CRPFSIEPAIGTLNVGESMQLEVEFEPQS 92 (122)
T ss_dssp CEEEEEEEECCSSSCEEEEEEC---CTTEEEESSEEEECTTCEEEEEEEECCSS
T ss_pred eEEEEEEEEECCCCCEEEEEec---CCCeEEECCcCEECCCCEEEEEEEEEcCC
Confidence 4468999999999999998774 34566667778999999988877776653
No 17
>3p54_A Envelope glycoprotein; viral envelope proteins, structural genomics, fusion peptide antibody epitopes, flavivirus; 2.10A {Japanese encephalitis virus} PDB: 2i69_A* 3i50_E 3iyw_A* 3j0b_A 2of6_A 3ixx_A 2hg0_A* 1pjw_A 1s6n_A 2p5p_A 1ztx_E
Probab=54.28 E-value=2.5e+02 Score=30.69 Aligned_cols=103 Identities=22% Similarity=0.254 Sum_probs=67.9
Q ss_pred CCceeeeCCCCCc-ccCcccccccccccCCcceeeeecccCC-eeEEEeeccceeEEEEEEEEEEc--------ce----
Q 005351 146 RQPICCPCGPQRR-IPSSCGNVFDKLLKGKANTAHCLRFPGD-WFHVFGIGQRSIGFSVRIEVKTG--------SK---- 211 (701)
Q Consensus 146 sQGfCC~C~~~~r-~~~~Cg~~~~~l~~g~~~SAHCLrf~~~-WY~vy~I~~~~i~y~I~VtI~~g--------ss---- 211 (701)
...+=|.=+..+| +..-||-| |+-+-.-|.+|.=. -+.++.|++-.|.|+|.|++-.+ ++
T Consensus 87 ~~~~vCKr~~sDRGWGNGCgLF------GKGSivtCaKftC~k~~~g~~i~~enI~y~V~v~vH~~~~~~~~~n~s~~~~ 160 (406)
T 3p54_A 87 DSSYVCKQGFTDRGWGNGCGFF------GKGSIDTCAKFSCTSKAIGRTIQPENIKYKVGIFVHGTTTSENHGNYSAQVG 160 (406)
T ss_dssp CTTEEEEEEEEEESGGGTCSSC------EEEEEEEEEEEEEEEEEEEEECCTTSEEEEEEEEECCSCCTTTTTCHHHHHH
T ss_pred cCCcEecCCCCCCCcccccccc------cCCcEEEEEEEEcCCcceEEEEeeeeEEEEEEEEEcCCccccccCCchhccc
Confidence 3556666666666 57888644 56556667776643 58999999999999999999842 11
Q ss_pred ---EeEEEEcCCCcceeecCCcE-EEEEeecccCCCCCCCccccEEEeeC
Q 005351 212 ---VSEVTVGPENKTATSADNFL-KVNLIGDFVGYTNIPSFEEFYLVIPR 257 (701)
Q Consensus 212 ---~~~v~Lgp~~~~~~s~d~~l-~~~LiGDf~~~~~~p~l~~~yLliPs 257 (701)
..++.+.|..+...-+-.+. .+.|-=. .++-.||++.||+...
T Consensus 161 ~~~~~~~~~T~~s~~~t~~lgdyG~vtl~C~---~~sg~D~~~~y~~~~~ 207 (406)
T 3p54_A 161 ASQAAKFTVTPNAPSVTLKLGDYGEVTLDCE---PRSGLNTEAFYVMTVG 207 (406)
T ss_dssp TTCEEEEEECSSSCEEEEECGGGBEEEEEEE---GGGSCCTTSEEEEEET
T ss_pred cccceeEEEecCCCcEEEEcCCCeEEEEEEE---eccCcCcccEEEEEeC
Confidence 23588888776554332211 2222222 2567899999999886
No 18
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=53.94 E-value=21 Score=33.03 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=38.9
Q ss_pred eEEEEEEEecCceeeeEEEEEE------cCCCCeeeceeEEEeCCCceEEEEEEEeecc
Q 005351 404 GVATITTQNTGEVEASYSLTFD------CSTGVTLMEEQYFIIKPKETSIRSFKIYPTT 456 (701)
Q Consensus 404 G~L~V~V~N~G~~~A~Y~v~vn------CS~~I~pI~~q~~~I~p~~~~~~~F~I~~~s 456 (701)
..-++++.|+|.+.|.|..... |.+ ...|++..-+|.|++.....+.+.+..
T Consensus 45 ~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~-wl~v~P~~G~L~Pge~~~I~v~~~v~~ 102 (140)
T 3qbt_B 45 QKEKFQISNNGQVPCHFSFIPKLNDSQYCKP-WLRAEPFEGYLEPNETVDISLDVYVSK 102 (140)
T ss_dssp EEEEEEEEECSSSCEEEEEECCTTCSSSSCT-TEEEESCEEEECTTCEEEEEEEECBCH
T ss_pred eeeEEEEEcCCccceEEEEecCCCchhhhhH-hhhcCCcccccCCCCeeEEEEEEEEcc
Confidence 3568999999999999998752 322 223445566999999999988888753
No 19
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=50.18 E-value=23 Score=41.30 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=38.2
Q ss_pred EEEEEEEecCceeeeEEEEEEcCCC----Ceeec----eeEEEeCCCceEEEEEEEeec
Q 005351 405 VATITTQNTGEVEASYSLTFDCSTG----VTLME----EQYFIIKPKETSIRSFKIYPT 455 (701)
Q Consensus 405 ~L~V~V~N~G~~~A~Y~v~vnCS~~----I~pI~----~q~~~I~p~~~~~~~F~I~~~ 455 (701)
.++|+|+|+|...+.-.|++.-+.- ..|+- =+.+.++|+++.+.+|.|...
T Consensus 616 ~vsv~VtNtG~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~ 674 (713)
T 3zyz_A 616 TVTVDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPGQSGTATFNIRRR 674 (713)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEECCTTSSSCCSCEEEEEEEEEECTTCEEEEEEEEEGG
T ss_pred EEEEEEEeCCCCccceeeeeeeecCCCCCCchhHHhhhcccceeCCCCeEEEEEEEcHH
Confidence 5789999999999999998743321 23432 135679999999999999653
No 20
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=48.21 E-value=3.8 Score=43.70 Aligned_cols=10 Identities=50% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 005351 611 HPHVHVRKHH 620 (701)
Q Consensus 611 ~~~~~~~~~~ 620 (701)
||||||++||
T Consensus 2 ~~~~~~~~~~ 11 (332)
T 2es4_D 2 HHHHHHHHHH 11 (332)
T ss_dssp ----------
T ss_pred CCcccccccc
Confidence 3444433443
No 21
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=45.70 E-value=8.6 Score=39.88 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhc
Q 005351 566 PTVLVLLWLLHQK 578 (701)
Q Consensus 566 ~~~l~~l~ll~k~ 578 (701)
.+.++|+|+|.|.
T Consensus 238 ~il~~l~y~~kr~ 250 (269)
T 2qjy_B 238 TVLSVLLYLTNKR 250 (269)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445566777764
No 22
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=44.93 E-value=4.6 Score=41.09 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=0.0
Q ss_pred CCccccccccccc
Q 005351 611 HPHVHVRKHHKQE 623 (701)
Q Consensus 611 ~~~~~~~~~~~~~ 623 (701)
||||||++||..|
T Consensus 3 ~~~~~~~~~~~~~ 15 (286)
T 1jr2_A 3 HHHHHHHHHHSSG 15 (286)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 4444444454433
No 23
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=44.32 E-value=2e+02 Score=34.19 Aligned_cols=97 Identities=11% Similarity=0.038 Sum_probs=67.9
Q ss_pred EEEEEEccccccccceeEEEEEEEecCc-eeeeEEEEEEcCCCCeee------ceeEEEeCCCceEEEEEEEeecccccc
Q 005351 388 KIISVIIPTFEALTQFGVATITTQNTGE-VEASYSLTFDCSTGVTLM------EEQYFIIKPKETSIRSFKIYPTTNQAA 460 (701)
Q Consensus 388 kI~sv~v~~FEA~S~~G~L~V~V~N~G~-~~A~Y~v~vnCS~~I~pI------~~q~~~I~p~~~~~~~F~I~~~s~~~~ 460 (701)
.++...+|.|=.--..-.|.+.|.|... -.-.+.|++.-++++.-. ..|.+.|+|++.....|+|... ..+
T Consensus 81 ~~v~~~LP~~v~~GD~~~i~~~v~N~~~~~~~~v~v~l~~~~~~~~~~~~~~~~~~~v~l~~~~~~~v~f~i~~~--~~G 158 (915)
T 2hr0_B 81 FFIDLRLPYSVVRNEQVEIRAVLYNYRQNQELKVRVELLHNPAFCSLATTKRRHQQTVTIPPKSSLSVPYVIVPL--KTG 158 (915)
T ss_dssp SEEEEECCSEEETTCCEEEEEEEEECCSSCCEEEEEEECCCTTEECSCCSSSCEEEEEEECTTEEEEEEEEEEEC--SCE
T ss_pred EEEEccCCCEEecCcEEEEEEEEEcCCCCeeEEEEEEEecCCceEeecCCCCcceeEEEECCCCeEEEEEEEEEC--ccc
Confidence 4667778877544444579999999887 667777777545443322 2478999999999999999864 446
Q ss_pred ceEEEEEEEcCCCCceeeeEEEEEee
Q 005351 461 KYTCSAILKDSDFSEVDRAECQFSTM 486 (701)
Q Consensus 461 ~~~C~v~L~ds~~~~lD~~~~~F~Tt 486 (701)
...++|......+..-|...-.+.+.
T Consensus 159 ~~~i~v~a~~~~~~~~D~v~~~l~V~ 184 (915)
T 2hr0_B 159 LQEVEVKAAVYHHFISDGVRKSLKVV 184 (915)
T ss_dssp EEEEEEEEEESSSCCEEEEEEEEEEE
T ss_pred eEEEEEEEEecCCCCCceEEEEEEEc
Confidence 77788887765444566666556553
No 24
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=42.73 E-value=5.2 Score=43.15 Aligned_cols=13 Identities=15% Similarity=0.094 Sum_probs=2.5
Q ss_pred ccccccchhccCC
Q 005351 657 LHHVQKDKHKHGR 669 (701)
Q Consensus 657 ~~~~~~~~~~~~~ 669 (701)
|--|++.|.+-..
T Consensus 27 ~~~~~~~~i~P~~ 39 (371)
T 3tla_A 27 LEMIQSHPLLAAP 39 (371)
T ss_dssp -------CBCCCC
T ss_pred HHHHHhccCCCCC
Confidence 4445555544333
No 25
>3uaj_B Envelope protein; dengue antibody membrane fusion, viral protein-immune system; HET: NAG; 3.23A {Dengue virus 4}
Probab=42.34 E-value=1.5e+02 Score=32.62 Aligned_cols=104 Identities=16% Similarity=0.239 Sum_probs=66.7
Q ss_pred CCceeeeCCCCCc-ccCcccccccccccCCcceeeeecccC-CeeEEEeeccceeEEEEEEEEEEcce----------Ee
Q 005351 146 RQPICCPCGPQRR-IPSSCGNVFDKLLKGKANTAHCLRFPG-DWFHVFGIGQRSIGFSVRIEVKTGSK----------VS 213 (701)
Q Consensus 146 sQGfCC~C~~~~r-~~~~Cg~~~~~l~~g~~~SAHCLrf~~-~WY~vy~I~~~~i~y~I~VtI~~gss----------~~ 213 (701)
...+-|.=+..+| +..-||-| |+-+-.-|.+|.= --+.++.|++-.|.|+|.|++-.++. ..
T Consensus 87 d~~~vCKr~~sDRGWGNGCGLF------GKGSIvTCaKFtC~k~~~g~~i~~enI~y~V~v~vH~~~~~~~~n~t~~~~~ 160 (433)
T 3uaj_B 87 DQQYICRRDVVDRGWGNGCGLF------GKGGVVTCAKFSCSGKITGNLVQIENLEYTVVVTVHNGDTHAVGNDTSNHGV 160 (433)
T ss_dssp CTTEEEEEEEEEESTTTTCSSC------EEEEEEEEEEEEEEEEEEEEECCSSSCEEEEEEEECC------------CCE
T ss_pred cCCcEecCCCCCCCcccccccc------cCcceEEEEeEEcCCcceEEEEeeeeEEEEEEEEEeCCcccccCCcccccCc
Confidence 3556666666666 57888644 5655666777665 36899999999999999999963221 12
Q ss_pred EEEEcCCCcceeecCCcE-EEEEeecccCCCCCCCccccEEEeeCC
Q 005351 214 EVTVGPENKTATSADNFL-KVNLIGDFVGYTNIPSFEEFYLVIPRQ 258 (701)
Q Consensus 214 ~v~Lgp~~~~~~s~d~~l-~~~LiGDf~~~~~~p~l~~~yLliPs~ 258 (701)
++.++|+.+...-+-.+. .+.|-=. .++-.||++.|||....
T Consensus 161 t~~fTp~sp~~t~~lgdYG~vtL~C~---~rSglD~~~~yv~tm~~ 203 (433)
T 3uaj_B 161 TAMITPRSPSVEVKLPDYGELTLDCE---PRSGIDFNEMILMKMKK 203 (433)
T ss_dssp EEEEBTTBCEEEEEETTTEEEEEEEE---EECSSCGGGEEEEEETT
T ss_pred eEEEecCCCcEEEEcCCceEEEEEEE---eccCcCcccEEEEEeCC
Confidence 468888877433321110 1222211 24678899999998863
No 26
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 2ol2_A*
Probab=41.89 E-value=5.4 Score=42.98 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCcccccccccccccc
Q 005351 610 DHPHVHVRKHHKQEGRH 626 (701)
Q Consensus 610 ~~~~~~~~~~~~~~~~~ 626 (701)
+||||||++||..++-+
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (395)
T 3b9f_I 2 GHHHHHHHHHHSSGHID 18 (395)
T ss_dssp -----------------
T ss_pred CccccccccccCCCCcC
Confidence 34555544555444444
No 27
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=41.84 E-value=5.4 Score=41.22 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=0.0
Q ss_pred CCcccccccccccc
Q 005351 611 HPHVHVRKHHKQEG 624 (701)
Q Consensus 611 ~~~~~~~~~~~~~~ 624 (701)
||||||++||..++
T Consensus 2 ~~~~~~~~~~~~~~ 15 (262)
T 1d1d_A 2 HHHHHHHHHHSSGH 15 (262)
T ss_dssp --------------
T ss_pred CCccccccccccCC
Confidence 44444444444333
No 28
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=40.59 E-value=2.9e+02 Score=27.59 Aligned_cols=96 Identities=11% Similarity=0.001 Sum_probs=60.5
Q ss_pred EEEEEEccccccccceeEEEEEEEecCceeeeEEEEEEcCCCCee------eceeEEEeCCCceEEEEEEEeeccccccc
Q 005351 388 KIISVIIPTFEALTQFGVATITTQNTGEVEASYSLTFDCSTGVTL------MEEQYFIIKPKETSIRSFKIYPTTNQAAK 461 (701)
Q Consensus 388 kI~sv~v~~FEA~S~~G~L~V~V~N~G~~~A~Y~v~vnCS~~I~p------I~~q~~~I~p~~~~~~~F~I~~~s~~~~~ 461 (701)
..+...+|.|-.--..-.|.++|.|...-.-...|++.-+++..- -..|.+.|.|+.....+|.|... ..+.
T Consensus 82 ffv~~~LP~sv~rGE~~~l~~~V~Ny~~~~~~v~V~l~~~~~~~~~~~~~~~~~~~v~v~a~~~~~v~f~i~p~--~~G~ 159 (252)
T 3hrz_B 82 FFIDLQMPYSVVKNEQVEIRAILHNYVNEDIYVRVELLYNPAFCSASTKGQRYRQQFPIKALSSRAVPFVIVPL--EQGL 159 (252)
T ss_dssp EEEEECCCSCEETTCCEEEEEEEEECSSSCEEEEEEECCCTTEEESCCSSCCEEEEEEECTTEEEEEEEEEEEC--SSEE
T ss_pred EEEEcCCCcEEeeCCEEEEEEEEEcccCceEEEEEEEEcCCceEeecCCCCceEEEEEECCCCeEEEEEEEEec--cCCc
Confidence 355666776533333346999999987666556666533332211 12567899999999999999874 4456
Q ss_pred eEEEEEEEcCCCCceeeeEEEEEe
Q 005351 462 YTCSAILKDSDFSEVDRAECQFST 485 (701)
Q Consensus 462 ~~C~v~L~ds~~~~lD~~~~~F~T 485 (701)
..++|......+..-|...-.+.+
T Consensus 160 ~~i~v~A~~~~~~~~D~v~k~L~V 183 (252)
T 3hrz_B 160 HDVEIKASVQEALWSDGVRKKLKV 183 (252)
T ss_dssp EEEEEEEEETTSSCEEEEEEEEEE
T ss_pred EEEEEEEEecCCCcCceEEEEEEE
Confidence 777777753334445655555555
No 29
>4fg0_A Polyprotein; viral envelope proteins, structural genomics, fusion peptide antibody epitopes, flavivirus; 3.90A {St}
Probab=40.08 E-value=2.1e+02 Score=31.24 Aligned_cols=103 Identities=19% Similarity=0.281 Sum_probs=65.7
Q ss_pred CCceeeeCCCCCc-ccCcccccccccccCCcceeeeecccCC-eeEEEeeccceeEEEEEEEEEE-------cc-e----
Q 005351 146 RQPICCPCGPQRR-IPSSCGNVFDKLLKGKANTAHCLRFPGD-WFHVFGIGQRSIGFSVRIEVKT-------GS-K---- 211 (701)
Q Consensus 146 sQGfCC~C~~~~r-~~~~Cg~~~~~l~~g~~~SAHCLrf~~~-WY~vy~I~~~~i~y~I~VtI~~-------gs-s---- 211 (701)
...+=|.=+..+| +..-||-| |+-+-.-|.+|.=. -+.++.|++-.|.|+|.|++-. ++ +
T Consensus 87 ~~~~vCKr~~sDRGWGNGCgLF------GKGSivtCaKftC~k~~~g~~i~~enI~Y~V~v~vHg~~~~~~~~n~t~~~~ 160 (407)
T 4fg0_A 87 DPTFVCKRDVVDRGWGNGCGLF------GKGSIDTCAKFTCKNKATGKTILRENIKYEVAIFVHGSTDSTSHGNYFEQIG 160 (407)
T ss_dssp STTEEEEEEEEECCTTTTCSSS------SEEEEEEEEEEEEEEEEEEEECCGGGEEEEEEEEECC---------------
T ss_pred cCCcEecCCCCCCCcccccccc------cCCceEEEEeEEcCCcceEEEEeeeeEEEEEEEEEcCCccccccCCcccccc
Confidence 3556666666666 57888644 66666677777653 5899999999999999999972 11 1
Q ss_pred ---EeEEEEcCCCcceeecCCcE-EEEEeecccCCCCCCCccccEEEeeC
Q 005351 212 ---VSEVTVGPENKTATSADNFL-KVNLIGDFVGYTNIPSFEEFYLVIPR 257 (701)
Q Consensus 212 ---~~~v~Lgp~~~~~~s~d~~l-~~~LiGDf~~~~~~p~l~~~yLliPs 257 (701)
..++.+.|+.+....+=.+. .+.|-=. .++-.||++.||+...
T Consensus 161 ~~~~~~~~~Tp~s~~~t~~lgdYG~vtl~C~---~~SgvD~~~~Yv~t~~ 207 (407)
T 4fg0_A 161 KNQAARFTISPQAPSFTANMGEYGTVTIDCE---ARSGINTEDYYVFTVK 207 (407)
T ss_dssp --CEEEEEECSSCCEEEEECGGGCEEEEEEE---EESSCCGGGEEEEECS
T ss_pred cccceEEEEecCCCCEEEEcCCceEEEEEEE---eccCcCcccEEEEEeC
Confidence 12367887765444331110 1112111 2467889999999875
No 30
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=39.70 E-value=6.1 Score=38.81 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=0.0
Q ss_pred CCccccccccc
Q 005351 611 HPHVHVRKHHK 621 (701)
Q Consensus 611 ~~~~~~~~~~~ 621 (701)
||||||++||.
T Consensus 3 ~~~~~~~~~~~ 13 (236)
T 2px7_A 3 HHHHHHHHHHS 13 (236)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 44444334443
No 31
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=39.48 E-value=6.2 Score=42.93 Aligned_cols=10 Identities=50% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 005351 611 HPHVHVRKHH 620 (701)
Q Consensus 611 ~~~~~~~~~~ 620 (701)
||||||++||
T Consensus 3 ~~~~~~~~~~ 12 (389)
T 3a5i_A 3 HHHHHHHHHH 12 (389)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4444433444
No 32
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=38.91 E-value=6.7 Score=41.53 Aligned_cols=10 Identities=50% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 005351 611 HPHVHVRKHH 620 (701)
Q Consensus 611 ~~~~~~~~~~ 620 (701)
||||||++||
T Consensus 3 ~~~~~~~~~~ 12 (315)
T 1uoz_A 3 HHHHHHHHHH 12 (315)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4444433443
No 33
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=38.88 E-value=6.4 Score=38.70 Aligned_cols=10 Identities=50% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 005351 611 HPHVHVRKHH 620 (701)
Q Consensus 611 ~~~~~~~~~~ 620 (701)
||||||++||
T Consensus 3 ~~~~~~~~~~ 12 (221)
T 2c0d_A 3 HHHHHHHHHH 12 (221)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4444433444
No 34
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=38.27 E-value=6.7 Score=44.42 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=0.0
Q ss_pred CCccccccccc
Q 005351 611 HPHVHVRKHHK 621 (701)
Q Consensus 611 ~~~~~~~~~~~ 621 (701)
||||||++||.
T Consensus 3 ~~~~~~~~~~~ 13 (560)
T 3odm_A 3 HHHHHHHHHHS 13 (560)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 44444344443
No 35
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=37.98 E-value=6.8 Score=41.67 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=3.1
Q ss_pred ceeeeec
Q 005351 676 MQQLYLD 682 (701)
Q Consensus 676 ~~~~~~~ 682 (701)
+.|+.+|
T Consensus 132 vtqv~V~ 138 (332)
T 4axs_A 132 LTQTIVD 138 (332)
T ss_dssp CCEEEEC
T ss_pred eeeeeec
Confidence 3444444
No 36
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=36.13 E-value=7.6 Score=43.44 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=0.0
Q ss_pred CCcccccccccccccc
Q 005351 611 HPHVHVRKHHKQEGRH 626 (701)
Q Consensus 611 ~~~~~~~~~~~~~~~~ 626 (701)
||||||++||....|-
T Consensus 3 ~~~~~~~~~~~~~~~~ 18 (514)
T 2r9r_B 3 HHHHHHHHHHGLVPRG 18 (514)
T ss_dssp ----------------
T ss_pred ccccccccccCccccc
Confidence 4555555666665554
No 37
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=35.94 E-value=7.6 Score=42.90 Aligned_cols=10 Identities=50% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 005351 611 HPHVHVRKHH 620 (701)
Q Consensus 611 ~~~~~~~~~~ 620 (701)
||||||++||
T Consensus 3 ~~~~~~~~~~ 12 (467)
T 2axq_A 3 HHHHHHHHHH 12 (467)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4444433444
No 38
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=35.49 E-value=22 Score=32.66 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=42.1
Q ss_pred cceeEEEEEEEecCceee-eEEEEEEcCC---CCeeecee-EEEeCCCceEEEEEEEeeccccc-----cceEEEEEEEc
Q 005351 401 TQFGVATITTQNTGEVEA-SYSLTFDCST---GVTLMEEQ-YFIIKPKETSIRSFKIYPTTNQA-----AKYTCSAILKD 470 (701)
Q Consensus 401 S~~G~L~V~V~N~G~~~A-~Y~v~vnCS~---~I~pI~~q-~~~I~p~~~~~~~F~I~~~s~~~-----~~~~C~v~L~d 470 (701)
...-.+.++|+|.|...| .+.|++.=.+ +-.++..+ .-.|.|+++.+.+|.+.+....+ ..|+=.+.+ |
T Consensus 15 g~~vTvsatVkN~Gt~~s~a~~V~~yl~~p~~gg~~vgt~tv~~LaaG~s~t~~v~~~~~~~~~~~a~~Gsy~v~AvV-D 93 (122)
T 2kut_A 15 GEEITVSARVTNRGAAEAHNVPVAVYLGNPAQGGVEIGRDTISRIPVGGTGLARVQWKATRKLAGRAANPGVPVYAVV-D 93 (122)
T ss_dssp TCEEEEEEEEECCSSSCBCCCCEEECSSCTTTCCCCCBCCCCSCBCTTCEEECCEEEECCCCCSSCCSCCCCCCCEEE-C
T ss_pred CCeEEEEEEEEeCCCcccCcEEEEEEeCCCccCCeEEeeEEccccCCCCeEEEEEEEecCCcccccccCceEEEEEEE-c
Confidence 334578999999997743 4555552222 11333222 23589999998656655443332 455555444 5
Q ss_pred CCCCce
Q 005351 471 SDFSEV 476 (701)
Q Consensus 471 s~~~~l 476 (701)
.++.+.
T Consensus 94 ~~n~v~ 99 (122)
T 2kut_A 94 PDNRVA 99 (122)
T ss_dssp CTTSSC
T ss_pred CCCcCc
Confidence 555444
No 39
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=34.52 E-value=8.3 Score=42.99 Aligned_cols=10 Identities=50% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 005351 611 HPHVHVRKHH 620 (701)
Q Consensus 611 ~~~~~~~~~~ 620 (701)
||||||++||
T Consensus 3 ~~~~~~~~~~ 12 (580)
T 3etc_A 3 HHHHHHHHHH 12 (580)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3444433333
No 40
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=34.08 E-value=55 Score=24.71 Aligned_cols=28 Identities=25% Similarity=0.618 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 005351 554 WLVLFGLVLAIFPTVLVLLWLLHQKGLFD 582 (701)
Q Consensus 554 ~~~~~~l~l~~~~~~l~~l~ll~k~g~~~ 582 (701)
|++..+.+.++ ....++++.|.|.|+|.
T Consensus 11 wiIi~s~l~GL-llL~li~~~LwK~GFFk 38 (42)
T 2k1a_A 11 WWVLVGVLGGL-LLLTILVLAMWKVGFFK 38 (42)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHcCccc
Confidence 44444333333 33344567788999996
No 41
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=33.81 E-value=33 Score=39.97 Aligned_cols=51 Identities=12% Similarity=0.073 Sum_probs=37.6
Q ss_pred EEEEEEEecCceeeeEEEEEEcCC---CC-eeec----eeEE-EeCCCceEEEEEEEeec
Q 005351 405 VATITTQNTGEVEASYSLTFDCST---GV-TLME----EQYF-IIKPKETSIRSFKIYPT 455 (701)
Q Consensus 405 ~L~V~V~N~G~~~A~Y~v~vnCS~---~I-~pI~----~q~~-~I~p~~~~~~~F~I~~~ 455 (701)
.++|+|+|+|...+.-.|++.=+. .+ .|+- =+.+ .++|+++.+.+|.|...
T Consensus 618 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~~L~pGes~~V~~~l~~~ 677 (721)
T 2x41_A 618 RVQYRIENTGGRAGKEVSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPVR 677 (721)
T ss_dssp EEEEEEEECSSSCBCCEEEEEEECCCSSSCCCSCEEEEEEECCCBCTTCEEEEEEEEEGG
T ss_pred EEEEEEEECCCCCCcEEeeEEEccCCCCCCCchHHhhcccccccCCCCCeEEEEEEECHH
Confidence 578999999999999998873332 22 3432 1255 78999999999999764
No 42
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=33.76 E-value=56 Score=34.75 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=47.6
Q ss_pred EEEEEEEecCceeeeEEEEEEcCCCC-----eeeceeEEEeCCCceEEEEEEEeeccccc-------cceEEEEEEEcCC
Q 005351 405 VATITTQNTGEVEASYSLTFDCSTGV-----TLMEEQYFIIKPKETSIRSFKIYPTTNQA-------AKYTCSAILKDSD 472 (701)
Q Consensus 405 ~L~V~V~N~G~~~A~Y~v~vnCS~~I-----~pI~~q~~~I~p~~~~~~~F~I~~~s~~~-------~~~~C~v~L~ds~ 472 (701)
.-++++.|+|.+.|.|.+.-...... ..+++..-+|.|+++....+.+.+....+ ....-..+|.=.+
T Consensus 49 ~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~~~~~~~ln~g~~~l~diLvL~ve~ 128 (366)
T 3qis_A 49 KEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLHLDR 128 (366)
T ss_dssp EEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBCTTTHHHHHHTSSCSCEEEEEEETT
T ss_pred EEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEECHHHHHHHhcCccccceEEEEEEeC
Confidence 45789999999999999864332322 22455667999999999988888875222 2334456666555
Q ss_pred CC
Q 005351 473 FS 474 (701)
Q Consensus 473 ~~ 474 (701)
|.
T Consensus 129 G~ 130 (366)
T 3qis_A 129 GK 130 (366)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 43
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=33.75 E-value=53 Score=39.08 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=36.9
Q ss_pred EEEEEEEecC-ceeeeEEEEEEcC---CCC-eeec----eeEEEeCCCceEEEEEEEe
Q 005351 405 VATITTQNTG-EVEASYSLTFDCS---TGV-TLME----EQYFIIKPKETSIRSFKIY 453 (701)
Q Consensus 405 ~L~V~V~N~G-~~~A~Y~v~vnCS---~~I-~pI~----~q~~~I~p~~~~~~~F~I~ 453 (701)
.++|+|+|+| ...+.-.|++.=+ ..+ .|+- =+.+.++|+++.+.+|.|.
T Consensus 738 ~v~v~V~NtG~~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~ 795 (845)
T 3abz_A 738 AISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLE 795 (845)
T ss_dssp EEEEEEEECCSSCCEEEEEEEEEEESSCSSCCCSCEEEEEEEEEECTTCEEEEEEEEE
T ss_pred EEEEEEEECCcCCCcceeeeeeEeCCCCCcchhhheeccceeEEECCCCEEEEEEEeC
Confidence 5789999999 9999999886322 222 3432 2256899999999999997
No 44
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=33.27 E-value=9 Score=41.75 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=0.0
Q ss_pred CCccccccccc
Q 005351 611 HPHVHVRKHHK 621 (701)
Q Consensus 611 ~~~~~~~~~~~ 621 (701)
||||||++||.
T Consensus 3 ~~~~~~~~~~~ 13 (394)
T 2qrj_A 3 HHHHHHHHHHS 13 (394)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 44444344443
No 45
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=33.14 E-value=9 Score=39.62 Aligned_cols=10 Identities=50% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 005351 611 HPHVHVRKHH 620 (701)
Q Consensus 611 ~~~~~~~~~~ 620 (701)
||||||++||
T Consensus 3 ~~~~~~~~~~ 12 (268)
T 3k9f_C 3 HHHHHHHHHH 12 (268)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4444433444
No 46
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=32.47 E-value=4e+02 Score=32.88 Aligned_cols=96 Identities=16% Similarity=-0.020 Sum_probs=66.0
Q ss_pred EEEEEEccccccccceeEEEEEEEecCceeeeEEEEEEcCCC-Ceee--------ceeEEEeCCCceEEEEEEEeecccc
Q 005351 388 KIISVIIPTFEALTQFGVATITTQNTGEVEASYSLTFDCSTG-VTLM--------EEQYFIIKPKETSIRSFKIYPTTNQ 458 (701)
Q Consensus 388 kI~sv~v~~FEA~S~~G~L~V~V~N~G~~~A~Y~v~vnCS~~-I~pI--------~~q~~~I~p~~~~~~~F~I~~~s~~ 458 (701)
..+...+|.|=.--..-.|.+.|.|...-.-...|++.-+++ +..+ ..|.+.|+|++.....|+|... .
T Consensus 666 ~~v~~~lP~~v~~Gd~~~l~~~v~N~~~~~~~v~v~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~v~f~i~~~--~ 743 (1325)
T 2pn5_A 666 FYIVENLPYSIKRGEAVVLQFTLFNNLGAEYIADVTLYNVANQTEFVGRPNTDLSYTKSVSVPPKVGVPISFLIKAR--K 743 (1325)
T ss_dssp EEEEEECCSEEETTCEEEEEEEEEECSSSCEEEEEEEECGGGCEEETTSCTTCCEEEEEEEECTTCCEEEEEEEEEC--S
T ss_pred EEEEcCCCcEEEcCCEEEEEEEEEeCCCCcEEEEEEEeecCCceEEeccCCCCCcceEEEEECCCCeEEEEEEEEEc--c
Confidence 456677887754444457999999988777777777754432 2222 2477999999999999999874 3
Q ss_pred ccceEEEEEEEcCCCCceeeeEEEEEe
Q 005351 459 AAKYTCSAILKDSDFSEVDRAECQFST 485 (701)
Q Consensus 459 ~~~~~C~v~L~ds~~~~lD~~~~~F~T 485 (701)
.+...+++......+..-|...-.+.+
T Consensus 744 ~G~~~i~v~a~~~~~~~~D~v~~~l~V 770 (1325)
T 2pn5_A 744 LGEMAVRVKASIMLGHETDALEKVIRV 770 (1325)
T ss_dssp SEEEEEEEEEESSTTSSEEEEEEEEEE
T ss_pred cceEEEEEEEEecCCCCCcEEEEEEEE
Confidence 457788888876655455655544544
No 47
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.84 E-value=36 Score=27.10 Aligned_cols=28 Identities=25% Similarity=0.609 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 005351 554 WLVLFGLVLAIFPTVLVLLWLLHQKGLFD 582 (701)
Q Consensus 554 ~~~~~~l~l~~~~~~l~~l~ll~k~g~~~ 582 (701)
|++..+.+.+ +...++++++|.|.|+|.
T Consensus 13 wiIi~svl~G-LllL~li~~~LwK~GFFk 40 (54)
T 2knc_A 13 WWVLVGVLGG-LLLLTILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHcCccc
Confidence 5544443333 333445567778999984
No 48
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=31.54 E-value=10 Score=40.70 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=0.0
Q ss_pred CCcccccccccccc
Q 005351 611 HPHVHVRKHHKQEG 624 (701)
Q Consensus 611 ~~~~~~~~~~~~~~ 624 (701)
||||||++||....
T Consensus 2 ~~~~~~~~~~~~~~ 15 (393)
T 1wuf_A 2 HHHHHHHHHHGLVP 15 (393)
T ss_dssp --------------
T ss_pred CCccccccccCccC
Confidence 45555445554443
No 49
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=30.65 E-value=11 Score=39.67 Aligned_cols=10 Identities=50% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 005351 611 HPHVHVRKHH 620 (701)
Q Consensus 611 ~~~~~~~~~~ 620 (701)
||||||++||
T Consensus 3 ~~~~~~~~~~ 12 (374)
T 2xci_A 3 HHHHHHHHHH 12 (374)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3333333333
No 50
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=30.25 E-value=11 Score=40.17 Aligned_cols=9 Identities=44% Similarity=0.744 Sum_probs=0.0
Q ss_pred CCccccccc
Q 005351 611 HPHVHVRKH 619 (701)
Q Consensus 611 ~~~~~~~~~ 619 (701)
||||||++|
T Consensus 3 ~~~~~~~~~ 11 (327)
T 1k8w_A 3 HHHHHHHHH 11 (327)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 344443333
No 51
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=30.00 E-value=11 Score=36.18 Aligned_cols=10 Identities=50% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 005351 611 HPHVHVRKHH 620 (701)
Q Consensus 611 ~~~~~~~~~~ 620 (701)
|||||+++||
T Consensus 3 ~~~~~~~~~~ 12 (185)
T 4b1m_A 3 HHHHHHHHHH 12 (185)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3444433343
No 52
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=29.83 E-value=11 Score=41.09 Aligned_cols=10 Identities=50% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 005351 611 HPHVHVRKHH 620 (701)
Q Consensus 611 ~~~~~~~~~~ 620 (701)
||||||++||
T Consensus 3 ~~~~~~~~~~ 12 (433)
T 4e4j_A 3 HHHHHHHHHH 12 (433)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4444433444
No 53
>3pnr_B Pbicp-C; immunoglobulin fold, hydrolase-hydrolase inhibitor complex; 2.60A {Plasmodium berghei}
Probab=29.83 E-value=11 Score=36.01 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=11.5
Q ss_pred CCCcccccccccccchhc
Q 005351 649 RDTDYYYYLHHVQKDKHK 666 (701)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~ 666 (701)
...-|--.|=-|||++-+
T Consensus 63 ~GnGylW~LLGVhK~~P~ 80 (187)
T 3pnr_B 63 AGTGYLWVLLGIHKDEPI 80 (187)
T ss_dssp TTSSCEEEEEEEESSCCC
T ss_pred CCceEEEEEeeecccCCc
Confidence 345677777777776543
No 54
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=29.58 E-value=11 Score=40.46 Aligned_cols=10 Identities=50% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 005351 611 HPHVHVRKHH 620 (701)
Q Consensus 611 ~~~~~~~~~~ 620 (701)
||||||++||
T Consensus 3 ~~~~~~~~~~ 12 (357)
T 2apo_A 3 HHHHHHHHHH 12 (357)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3333333443
No 55
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=29.45 E-value=11 Score=39.76 Aligned_cols=15 Identities=7% Similarity=0.102 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHcC
Q 005351 318 LWNYREADQNRINRN 332 (701)
Q Consensus 318 L~dy~~~D~~~i~~G 332 (701)
+..-.+.-.+.+++|
T Consensus 48 ~~~al~~A~~~v~~G 62 (314)
T 3tr9_A 48 LNSALRTAEKMVDEG 62 (314)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 333333334444444
No 56
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1
Probab=29.38 E-value=11 Score=40.09 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=0.0
Q ss_pred CCcccccccccccc
Q 005351 611 HPHVHVRKHHKQEG 624 (701)
Q Consensus 611 ~~~~~~~~~~~~~~ 624 (701)
||||||++||....
T Consensus 2 ~~~~~~~~~~~~~~ 15 (386)
T 1wue_A 2 HHHHHHHHHHGLVP 15 (386)
T ss_dssp --------------
T ss_pred CCccccccccccCC
Confidence 45555445554443
No 57
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=29.16 E-value=2.5e+02 Score=31.75 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=37.9
Q ss_pred cceeEEEEEEEecCceeeeEEEEEEcCCCCe-eeceeEEEe-CCCceEEEEEEEe
Q 005351 401 TQFGVATITTQNTGEVEASYSLTFDCSTGVT-LMEEQYFII-KPKETSIRSFKIY 453 (701)
Q Consensus 401 S~~G~L~V~V~N~G~~~A~Y~v~vnCS~~I~-pI~~q~~~I-~p~~~~~~~F~I~ 453 (701)
+...+++.+|+|.|.-.+.|.+.+.-..+|. .+++..+.+ +.+|..+|+..+.
T Consensus 536 ~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~ 590 (621)
T 3vta_A 536 TFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVR 590 (621)
T ss_dssp CEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEE
T ss_pred ceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEE
Confidence 3334577789999999999999998888776 345666666 4566666655553
No 58
>2xwx_A GBPA, glcnac-binding protein A; chitin-binding protein; 1.80A {Vibrio cholerae}
Probab=29.01 E-value=5.8e+02 Score=27.59 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=36.9
Q ss_pred eeEEEeCCCceEEEEEEEeeccccccceEEEEEEEcCCCCceeeeEEEEEee
Q 005351 435 EQYFIIKPKETSIRSFKIYPTTNQAAKYTCSAILKDSDFSEVDRAECQFSTM 486 (701)
Q Consensus 435 ~q~~~I~p~~~~~~~F~I~~~s~~~~~~~C~v~L~ds~~~~lD~~~~~F~Tt 486 (701)
.+..+|.-+.. ..|.|-++...+..+.=-|..+|.+|++++.....|..+
T Consensus 341 ~~~~~v~~~~~--~~~tl~ls~~~aGhh~lvv~~~~~~G~~~~q~~~~f~L~ 390 (391)
T 2xwx_A 341 SWSQAMTDGEL--KSITLELSEAKAGHHMLVSRIKDRDGNLQDQQTLDFMLV 390 (391)
T ss_dssp EEEEEECTTCE--EEEEEECSCCCSEEEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred eeeEEEcCCCc--ceEEEEccCCCCccEEEEEEEECCCCcEeeEEeccEEEe
Confidence 34445655554 345676776788899999999999999988877788775
No 59
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=28.76 E-value=16 Score=31.93 Aligned_cols=37 Identities=16% Similarity=0.097 Sum_probs=19.2
Q ss_pred HHhcCCc-ccchhhhhhhccCcccccccccccccCCCCCcc
Q 005351 575 LHQKGLF-DPLYDWWDDHFQSDNQRIRDFRSRRIDVDHPHV 614 (701)
Q Consensus 575 l~k~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (701)
+=+.|-= +=|++|..+++|. .|...-..+...+||||
T Consensus 52 ~l~~G~Sd~eI~~~mv~RYGd---fVly~Pp~~~~~~~~~~ 89 (90)
T 2kw0_A 52 LMQEGKSKKEIVDYMVARYGN---FVTYDPPLTPLEHHHHH 89 (90)
T ss_dssp HHHHTCCHHHHHHHHHHHHTT---TCBCSCCSCC-------
T ss_pred HHHcCCCHHHHHHHHHHhcCC---eEEeeCCCCchhccccC
Confidence 3345554 4588999999997 44445455554444443
No 60
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=28.46 E-value=12 Score=38.46 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=0.0
Q ss_pred ccccccCCCCCccccccccccccc
Q 005351 602 FRSRRIDVDHPHVHVRKHHKQEGR 625 (701)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~ 625 (701)
+||...++ |||||++||..++-
T Consensus 6 ~~~~~~~~--~~~~~~~~~~~~~~ 27 (254)
T 2bu3_A 6 RRRYTMGH--HHHHHHHHHSSGHI 27 (254)
T ss_dssp ------------------------
T ss_pred eehhcccc--ccccccccccccch
Confidence 34544443 33333355544433
No 61
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=28.07 E-value=12 Score=40.18 Aligned_cols=10 Identities=50% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 005351 611 HPHVHVRKHH 620 (701)
Q Consensus 611 ~~~~~~~~~~ 620 (701)
||||||++||
T Consensus 2 ~~~~~~~~~~ 11 (358)
T 3tut_A 2 HHHHHHHHHH 11 (358)
T ss_dssp ----------
T ss_pred Cccccccccc
Confidence 3333333333
No 62
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=27.86 E-value=5e+02 Score=33.01 Aligned_cols=82 Identities=10% Similarity=0.017 Sum_probs=59.1
Q ss_pred EEEEEEccccccccceeEEEEEEEecCc-eeeeEEEEEEcCCCCeee------ceeEEEeCCCceEEEEEEEeecccccc
Q 005351 388 KIISVIIPTFEALTQFGVATITTQNTGE-VEASYSLTFDCSTGVTLM------EEQYFIIKPKETSIRSFKIYPTTNQAA 460 (701)
Q Consensus 388 kI~sv~v~~FEA~S~~G~L~V~V~N~G~-~~A~Y~v~vnCS~~I~pI------~~q~~~I~p~~~~~~~F~I~~~s~~~~ 460 (701)
.++...+|.|=.--..-.|.+.|-|... -.-...|++.-++++.-. ..|.+.|+|++..+..|.|... ..+
T Consensus 828 f~v~~~LP~sv~~GD~~~i~~~V~N~~~~~~~~v~v~l~~~~~~~~~~~~~~~~~~~v~v~a~~~~~v~f~i~p~--~~G 905 (1661)
T 2b39_A 828 FFIDLRLPYSVVRNEQVEIRAILYNYREAENLKVRVELLYNPAFCSLATAKKRHQQTITIPARSSVAVPYVIVPL--KIG 905 (1661)
T ss_dssp EEEEEECCSCEESSCEEEEEEEEEECCTTCCEEEEEEECCCTTEECSSCSSCCCEEEEEECTTCEEEEEEEEEEC--SCE
T ss_pred EEEEecCCcEEEeCCEEEEEEEEEcCCCCccEEEEEEEcCCCCeEeecCCCCcceEEEEECCCCcEEEEEEEEEc--ccC
Confidence 4667778877544444579999999888 777777777545443222 2478999999999999999864 446
Q ss_pred ceEEEEEEEcC
Q 005351 461 KYTCSAILKDS 471 (701)
Q Consensus 461 ~~~C~v~L~ds 471 (701)
...++|.....
T Consensus 906 ~~~i~v~a~~~ 916 (1661)
T 2b39_A 906 LHEVEVKAAVY 916 (1661)
T ss_dssp EEEEEEEEEES
T ss_pred eEEEEEEEEec
Confidence 77888887654
No 63
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=26.81 E-value=18 Score=42.29 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=8.0
Q ss_pred cCCcccchhhhh
Q 005351 578 KGLFDPLYDWWD 589 (701)
Q Consensus 578 ~g~~~~~~~~~~ 589 (701)
.=+..++|.||+
T Consensus 713 l~l~Pal~~~~~ 724 (741)
T 3aqp_A 713 IYVVSALVVAWK 724 (741)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 334567888884
No 64
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase; 1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1qxa_A 1ng5_A 1qx6_A*
Probab=26.68 E-value=21 Score=36.09 Aligned_cols=10 Identities=50% Similarity=0.870 Sum_probs=4.0
Q ss_pred CCcccccccc
Q 005351 611 HPHVHVRKHH 620 (701)
Q Consensus 611 ~~~~~~~~~~ 620 (701)
||||||++||
T Consensus 2 ~~~~~~~~~~ 11 (235)
T 1qwz_A 2 HHHHHHHHHH 11 (235)
T ss_dssp CCSSSSCCCC
T ss_pred Cccccccccc
Confidence 3444433444
No 65
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A*
Probab=26.43 E-value=18 Score=35.09 Aligned_cols=6 Identities=50% Similarity=0.833 Sum_probs=2.4
Q ss_pred CCCccc
Q 005351 610 DHPHVH 615 (701)
Q Consensus 610 ~~~~~~ 615 (701)
+|||||
T Consensus 168 ~~~~~~ 173 (178)
T 3tq8_A 168 GHHHHH 173 (178)
T ss_dssp CCSCCC
T ss_pred cccccc
Confidence 344433
No 66
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=26.28 E-value=14 Score=37.43 Aligned_cols=10 Identities=50% Similarity=0.816 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 005351 611 HPHVHVRKHH 620 (701)
Q Consensus 611 ~~~~~~~~~~ 620 (701)
||||||.+||
T Consensus 3 ~~~~~~~~~~ 12 (321)
T 2x7q_A 3 HHHHHHGHHH 12 (321)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3444433343
No 67
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=26.26 E-value=39 Score=40.79 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=0.0
Q ss_pred cccCCCCCccc
Q 005351 605 RRIDVDHPHVH 615 (701)
Q Consensus 605 ~~~~~~~~~~~ 615 (701)
|.-.++.||||
T Consensus 1040 ~~~~~~~~~~~ 1050 (1052)
T 2v50_A 1040 ASVEKGQHHHH 1050 (1052)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 44444444443
No 68
>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=26.13 E-value=26 Score=31.54 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=0.0
Q ss_pred ccccccccccccCCCCCccc
Q 005351 596 NQRIRDFRSRRIDVDHPHVH 615 (701)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~ 615 (701)
+|...+......+++|||||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~ 106 (107)
T 3dl8_E 87 EQSEGKGTTQESGKGHHHHH 106 (107)
T ss_dssp --------------------
T ss_pred hhccCCCcccccCCCccccC
Confidence 34434444445566666555
No 69
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=25.26 E-value=16 Score=42.87 Aligned_cols=9 Identities=22% Similarity=0.637 Sum_probs=7.3
Q ss_pred cCCcccchh
Q 005351 578 KGLFDPLYD 586 (701)
Q Consensus 578 ~g~~~~~~~ 586 (701)
+.+|+|+|+
T Consensus 693 ~~lFe~V~~ 701 (724)
T 3rce_A 693 QDLFEQVTN 701 (724)
T ss_dssp TTTCCEEEE
T ss_pred hhhhhhhhc
Confidence 468999996
No 70
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=24.54 E-value=20 Score=34.67 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=6.9
Q ss_pred EEEEEEccccccc
Q 005351 388 KIISVIIPTFEAL 400 (701)
Q Consensus 388 kI~sv~v~~FEA~ 400 (701)
.|+.+.-.+|+..
T Consensus 19 ~vi~lt~~nF~~~ 31 (178)
T 3ga4_A 19 GVITVTADNYPLL 31 (178)
T ss_dssp SEEECCTTTHHHH
T ss_pred CCEECCHHHHHHH
Confidence 3555555566644
No 71
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=24.12 E-value=16 Score=44.23 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=5.1
Q ss_pred cceeeeecCCCC
Q 005351 675 VMQQLYLDTGKN 686 (701)
Q Consensus 675 ~~~~~~~~~~~~ 686 (701)
++.+|.||-|.|
T Consensus 35 NLkni~v~iP~~ 46 (993)
T 2ygr_A 35 NLRSVDLDLPRD 46 (993)
T ss_dssp SCCSEEEEEESS
T ss_pred ccCceeeeccCC
Confidence 344444444443
No 72
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.09 E-value=95 Score=26.45 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=34.3
Q ss_pred EEEEEEEecCceeeeEEEEEE-cCC-CCeeeceeEEEeCCCceEEEEEEEee
Q 005351 405 VATITTQNTGEVEASYSLTFD-CST-GVTLMEEQYFIIKPKETSIRSFKIYP 454 (701)
Q Consensus 405 ~L~V~V~N~G~~~A~Y~v~vn-CS~-~I~pI~~q~~~I~p~~~~~~~F~I~~ 454 (701)
...+.++|+|.+.+.|.+.-. |+. +...++...-.|.|++.......+..
T Consensus 29 ~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~ 80 (112)
T 2e6j_A 29 CYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSS 80 (112)
T ss_dssp EEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECC
T ss_pred EEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEEC
Confidence 467999999999999998532 221 23444555568899988766555544
No 73
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=23.12 E-value=17 Score=42.56 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=0.0
Q ss_pred cCCCCCcccccccc
Q 005351 607 IDVDHPHVHVRKHH 620 (701)
Q Consensus 607 ~~~~~~~~~~~~~~ 620 (701)
-+.+||||||+-||
T Consensus 785 ~~~~~~~~~~~~~~ 798 (802)
T 4hg6_A 785 WGSNHHHHHHKLHH 798 (802)
T ss_dssp --------------
T ss_pred ccccccccchhccc
Confidence 34455555544443
No 74
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=23.11 E-value=2e+02 Score=24.23 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=40.3
Q ss_pred EeCCCceEEEEEEEeeccccccceE-EEEEEEcCCCCceeeeEEEEEeeeeeecCCcccccCCCCCCCCCchh
Q 005351 439 IIKPKETSIRSFKIYPTTNQAAKYT-CSAILKDSDFSEVDRAECQFSTMATVLDNGSQITPFQPPKSSINDFF 510 (701)
Q Consensus 439 ~I~p~~~~~~~F~I~~~s~~~~~~~-C~v~L~ds~~~~lD~~~~~F~TtaT~~~nG~q~~~~~~~~~~~~gf~ 510 (701)
.-.|++++.+.+-+.-......+.. =.+.|.|++|.++.+.... ...+|.--++++.|+....|.+
T Consensus 12 iYrPGetV~~~~~~~~~~~~p~~~~~~~v~l~dp~g~~v~~~~~~------~~~~G~~~~~f~Lp~~~~~G~y 78 (102)
T 2p9r_A 12 IYKPGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSF------QLEGGLKQFSFPLSSEPFQGSY 78 (102)
T ss_dssp EECTTCEEEEEEEEECGGGCBCCCEEEEEEEECTTSCEEEEEEEE------ECBTTEEEEEEECCSSCCCEEE
T ss_pred ccCCCCEEEEEEEEECCCCcCCCCCceEEEEECCCCCEEEEEEee------cCCCCEEEEEEECCCCCCCeeE
Confidence 3489999877655543322222333 4899999999987664322 1235655556777776666643
No 75
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=22.89 E-value=5.5e+02 Score=29.34 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=44.8
Q ss_pred eEEEEEEEecCceeeeEEEEEEcCCCCe-eeceeEEEe-CCCceEEEEEEEeeccccc-cceEEEEEEEcCCCCc
Q 005351 404 GVATITTQNTGEVEASYSLTFDCSTGVT-LMEEQYFII-KPKETSIRSFKIYPTTNQA-AKYTCSAILKDSDFSE 475 (701)
Q Consensus 404 G~L~V~V~N~G~~~A~Y~v~vnCS~~I~-pI~~q~~~I-~p~~~~~~~F~I~~~s~~~-~~~~C~v~L~ds~~~~ 475 (701)
.+++-+|+|.|.-.+.|.+.+.-..+|. .+++..+.. +++|..+|+..+....... .-..=.+...|+.+..
T Consensus 560 ~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~~fg~l~w~~~~~~h 634 (649)
T 3i6s_A 560 QKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNH 634 (649)
T ss_dssp EEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CCCEEEEEEEETTSCC
T ss_pred EEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCceEEEEEEEEcCCCCe
Confidence 5678889999999999999998888876 345556665 5788887776665542211 1234455555543443
No 76
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=22.65 E-value=9.1e+02 Score=27.70 Aligned_cols=85 Identities=14% Similarity=0.065 Sum_probs=46.8
Q ss_pred EEEEEEecCceeeeEEEEEEcCC-CCeeec--eeEEEeCCCceEEEEEEEeeccc-------cccceEEEEEEEcCCCCc
Q 005351 406 ATITTQNTGEVEASYSLTFDCST-GVTLME--EQYFIIKPKETSIRSFKIYPTTN-------QAAKYTCSAILKDSDFSE 475 (701)
Q Consensus 406 L~V~V~N~G~~~A~Y~v~vnCS~-~I~pI~--~q~~~I~p~~~~~~~F~I~~~s~-------~~~~~~C~v~L~ds~~~~ 475 (701)
+.+.|.|.+.-.....|.+.-.+ +-..+. .+.+.+.+++.....+.+.+... ...-|...+.|++ +|.+
T Consensus 191 v~~~v~n~~~~~~~~~v~~~l~d~~g~~v~~~~~~~~~~~~~~~~~~~~~~v~~p~LWsg~e~P~LY~l~v~l~~-~g~~ 269 (692)
T 3fn9_A 191 VKVKLDNAGLQPAAVTLENTIYTQEGQKVGTHSRSFDLSPQGTQTYLSTFKLKNPHLWQGRKDPYLYKVVCRLMA-DGKV 269 (692)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSCEEEEEEEEEEECSSSCEEEEEEEEEESCCCCCTTSCCCCEEEEEEEES-SSSE
T ss_pred EEEEEEeCCCCceeEEEEEEEECCCCCEEEEEEeEEEecCCCeEEEEEEEEcCCceeCCCCcCcccEEEEEEEEE-CCEE
Confidence 44555666544444444432221 111222 23456777766555555554322 1137889999985 6889
Q ss_pred eeeeEEEEEeeeeeec
Q 005351 476 VDRAECQFSTMATVLD 491 (701)
Q Consensus 476 lD~~~~~F~TtaT~~~ 491 (701)
+|.....|-.-...++
T Consensus 270 ~D~~~~~~GfR~ie~~ 285 (692)
T 3fn9_A 270 IDEVVQPLGVRKYEIV 285 (692)
T ss_dssp EEEEEEEECCCCEEEE
T ss_pred EEEEEEEecceEEEEE
Confidence 9988877766444443
No 77
>3k4z_A Glycoside hydrolase family 9; cellulase, CBHA, CBM4, IG-like, cellulosome, CBM, sugar binding protein; HET: CBI XGP; 2.11A {Clostridium thermocellum dsm 4150}
Probab=22.50 E-value=3.1e+02 Score=28.13 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=34.7
Q ss_pred ccccccceeEEEEEEEecCceeeeEEEEEEcCCCCeeeceeEEEeCCCceEEEEEEEeecc
Q 005351 396 TFEALTQFGVATITTQNTGEVEASYSLTFDCSTGVTLMEEQYFIIKPKETSIRSFKIYPTT 456 (701)
Q Consensus 396 ~FEA~S~~G~L~V~V~N~G~~~A~Y~v~vnCS~~I~pI~~q~~~I~p~~~~~~~F~I~~~s 456 (701)
.+++...+|.|.|.|.|.|.-. |.+++. -.-+.|.++++|.++|..+.+.
T Consensus 46 ~~~~~~~~g~l~i~i~~~G~n~--W~vQl~---------q~gi~L~~G~tY~lSF~akAs~ 95 (289)
T 3k4z_A 46 DVPGQPGNKAFAVTVLDKGQNR--WSVQMR---------HRGLTLEQGHTYRVRLKIWADA 95 (289)
T ss_dssp ECTTSTTCEEEEEEEEEECSSG--GGEEEE---------EEEEEECTTCEEEEEEEEEESS
T ss_pred ccccccCCCEEEEEeCCCCCCC--eeEEEE---------ECCEEecCCCEEEEEEEEEeCC
Confidence 3446778999999999998653 333321 1135778899999999887753
No 78
>2l7q_A Conserved protein found in conjugate transposon; NESG, structural genomics, PSI-biology; NMR {Bacteroides vulgatus}
Probab=21.37 E-value=24 Score=32.42 Aligned_cols=35 Identities=26% Similarity=0.170 Sum_probs=23.6
Q ss_pred EeCCCceEEEEEEEeeccccc-cceEEEEEEEcCCC
Q 005351 439 IIKPKETSIRSFKIYPTTNQA-AKYTCSAILKDSDF 473 (701)
Q Consensus 439 ~I~p~~~~~~~F~I~~~s~~~-~~~~C~v~L~ds~~ 473 (701)
.|.++++++..+.|.-+.+-+ ..++-.-.-.|..|
T Consensus 22 ~I~~GeTvEIR~~L~reG~f~~t~Y~IRYFQ~dGkG 57 (124)
T 2l7q_A 22 EIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKG 57 (124)
T ss_dssp CCCSSEEEEEEEEEEECCCCSCCCCEEEEECCSSCE
T ss_pred ccCCCCeEEEEEEEecCceecccEEEEEEEeecCCe
Confidence 478888888888888877644 45555544445555
No 79
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=20.91 E-value=21 Score=38.56 Aligned_cols=9 Identities=11% Similarity=0.257 Sum_probs=4.0
Q ss_pred CCCCCCCcc
Q 005351 645 KHSDRDTDY 653 (701)
Q Consensus 645 ~~~~~~~~~ 653 (701)
+|--.-.|+
T Consensus 31 rh~Lsl~Dl 39 (365)
T 4amu_A 31 RSLDSLLNF 39 (365)
T ss_dssp CCBSCGGGS
T ss_pred CCcCchhhC
Confidence 444444444
No 80
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=20.72 E-value=21 Score=38.29 Aligned_cols=8 Identities=25% Similarity=0.646 Sum_probs=4.0
Q ss_pred cccccccc
Q 005351 653 YYYYLHHV 660 (701)
Q Consensus 653 ~~~~~~~~ 660 (701)
||.+|+.+
T Consensus 92 Y~~~L~~l 99 (380)
T 3c3r_A 92 YYDQICSI 99 (380)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 81
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=20.64 E-value=21 Score=32.20 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCccccccccccccccccchhcc
Q 005351 611 HPHVHVRKHHKQEGRHHKLEARR 633 (701)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~ 633 (701)
|||||+++||-..+--.-+.|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (143)
T 3a4u_B 3 HHHHHHHHHHSSGHIEGRHMLEE 25 (143)
T ss_dssp -----------------------
T ss_pred cccccccccccccccccHHHHhc
Confidence 44444444444443333334443
No 82
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=20.40 E-value=21 Score=30.69 Aligned_cols=9 Identities=44% Similarity=0.744 Sum_probs=0.0
Q ss_pred CCccccccc
Q 005351 611 HPHVHVRKH 619 (701)
Q Consensus 611 ~~~~~~~~~ 619 (701)
|||||+++|
T Consensus 3 ~~~~~~~~~ 11 (87)
T 1tyg_B 3 HHHHHHHHH 11 (87)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 344443333
No 83
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=20.30 E-value=22 Score=33.46 Aligned_cols=10 Identities=50% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCcccccccc
Q 005351 611 HPHVHVRKHH 620 (701)
Q Consensus 611 ~~~~~~~~~~ 620 (701)
|||||+++||
T Consensus 3 ~~~~~~~~~~ 12 (142)
T 2pi2_E 3 HHHHHHHHHH 12 (142)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3444433444
Done!