BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005352
(701 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 141/351 (40%), Gaps = 58/351 (16%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW----QVVEDERLTEVDIPEIDPSCIY 299
Q + H S+ + FSPDGQ +ASA DD V+LW Q+++ + + S
Sbjct: 174 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG 233
Query: 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESA-CVVFPP--------------KVFRILE 344
T+ S+ K + + +L++L S S V F P K++
Sbjct: 234 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG 293
Query: 345 KPLHEFHGHSGEILDLSWSKNNYLL-SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403
+ L GHS + +++S + + SAS DKTV+LW H + HS+ V V F+
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFS 353
Query: 404 PVDDNYFISGSIDGKVRIW-------AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM 456
P D S S D V++W L+ H V V + PDGQ S
Sbjct: 354 P-DGQTIASASDDKTVKLWNRNGQLLQTLTGH-------SSSVRGVAFSPDGQTIASASD 405
Query: 457 MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516
+ +N + L+ + HS + G F P D + + S +D + L
Sbjct: 406 DKTVKLWNRNGQLLQ---TLTGHSSS------VWGVAFSPDD--QTIASASDDKTVKLWN 454
Query: 517 PN------VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561
N + G +R F+ DG+ I SA +D V +WN G
Sbjct: 455 RNGQLLQTLTGHSSSVR------GVAFSPDGQTIASASDDKTVKLWNRNGQ 499
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 138/345 (40%), Gaps = 46/345 (13%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW----QVVEDERLTEVDIPEIDPSCIY 299
Q + H S+ + FSPDGQ +ASA DD V+LW Q+++ + + S
Sbjct: 51 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDG 110
Query: 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESAC-VVFPP--------------KVFRILE 344
T+ S+ K + + +L++L S S V F P K++
Sbjct: 111 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 170
Query: 345 KPLHEFHGHSGEILDLSWSKNNYLL-SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403
+ L GHS + +++S + + SAS DKTV+LW + HS+ V V F+
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS 230
Query: 404 PVDDNYFISGSIDGKVRIW-------AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM 456
P D S S D V++W L+ H V V +RPDGQ S
Sbjct: 231 P-DGQTIASASDDKTVKLWNRNGQLLQTLTGH-------SSSVNGVAFRPDGQTIASASD 282
Query: 457 MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516
+ +N + L+ + HS + G F P + + S +D + L
Sbjct: 283 DKTVKLWNRNGQLLQ---TLTGHSSS------VWGVAFSPD--GQTIASASDDKTVKLWN 331
Query: 517 PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561
N S + F+ DG+ I SA +D V +WN G
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 376
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 141/346 (40%), Gaps = 48/346 (13%)
Query: 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW----QVVEDERLTEVDIPEIDPSCIYF 300
++AH S+ + FSPDGQ +ASA DD V+LW Q+++ + + S
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 301 TVNHLSELKPLFMDKEKISILKSLRRTSESA-CVVFPP--------------KVFRILEK 345
T+ S+ K + + +L++L S S V F P K++ +
Sbjct: 71 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 130
Query: 346 PLHEFHGHSGEILDLSWSKNNYLL-SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNP 404
L GHS + +++S + + SAS DKTV+LW + HS+ V V F+P
Sbjct: 131 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 190
Query: 405 VDDNYFISGSIDGKVRIW-------AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM 457
D S S D V++W L+ H V V + PDGQ S
Sbjct: 191 -DGQTIASASDDKTVKLWNRNGQLLQTLTGH-------SSSVRGVAFSPDGQTIASASDD 242
Query: 458 GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL-QG 516
+ +N + L+ + HS + G F P D + + D V++ +
Sbjct: 243 KTVKLWNRNGQLLQ---TLTGHSSS------VNGVAFRP-DGQTIASASDDKTVKLWNRN 292
Query: 517 PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562
++ G S + F+ DG+ I SA +D V +WN G
Sbjct: 293 GQLLQTLTG--HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH 336
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 137/342 (40%), Gaps = 48/342 (14%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW----QVVEDERLTEVDIPEIDPSCIY 299
Q + H S+ + F PDGQ +ASA DD V+LW Q+++ + + S
Sbjct: 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG 315
Query: 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESAC-VVFPP--------------KVFRILE 344
T+ S+ K + + L++L S S V F P K++
Sbjct: 316 QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375
Query: 345 KPLHEFHGHSGEILDLSWSKNNYLL-SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403
+ L GHS + +++S + + SAS DKTV+LW + HS+ V V F+
Sbjct: 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 435
Query: 404 PVDDNYFISGSIDGKVRIW-------AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM 456
P DD S S D V++W L+ H V V + PDGQ S
Sbjct: 436 P-DDQTIASASDDKTVKLWNRNGQLLQTLTGH-------SSSVRGVAFSPDGQTIASASD 487
Query: 457 MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL-Q 515
+ +N + L+ + HS + G F P D + + D V++ +
Sbjct: 488 DKTVKLWNRNGQLLQ---TLTGHSSS------VRGVAFSP-DGQTIASASDDKTVKLWNR 537
Query: 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557
++ G S + F+ DG+ I SA D V +WN
Sbjct: 538 NGQLLQTLTG--HSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 90/226 (39%), Gaps = 29/226 (12%)
Query: 345 KPLHEFHGHSGEILDLSWSKNNYLL-SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403
K + HS + +++S + + SAS DKTV+LW + HS+ V V F+
Sbjct: 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 66
Query: 404 PVDDNYFISGSIDGKVRIW-------AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM 456
P D S S D V++W L+ H V V + PDGQ S
Sbjct: 67 P-DGQTIASASDDKTVKLWNRNGQLLQTLTGH-------SSSVRGVAFSPDGQTIASASD 118
Query: 457 MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL-Q 515
+ +N + L+ + HS + G F P D + + D V++ +
Sbjct: 119 DKTVKLWNRNGQLLQ---TLTGHSSS------VWGVAFSP-DGQTIASASDDKTVKLWNR 168
Query: 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561
++ G S + F+ DG+ I SA +D V +WN G
Sbjct: 169 NGQLLQTLTG--HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ 212
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 87 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 145
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 206 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 257
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 258 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H ++ ++KFSP+G++LAS+ D ++++W + + + ++ S + ++ +
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 100
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-K 364
S L D + + I S C L GHS + +++ +
Sbjct: 101 SNLLVSASDDKTLKIWD----VSSGKC--------------LKTLKGHSNYVFCCNFNPQ 142
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++S S D++VR+W V CL+ P HS+ V+ VHFN D + +S S DG RIW
Sbjct: 143 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 201
Query: 424 VLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
S + + D V+ V + P+G+ + ++ + ++ S
Sbjct: 202 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 246
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V + C+
Sbjct: 125 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPA 171
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 172 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 225
Query: 364 KN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D T++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 226 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 285
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 286 YIWNLQTKEIV 296
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315
+KFSP+G+Y+ +A D ++LW + + C+ H +E +F +
Sbjct: 222 VKFSPNGKYILAATLDNTLKLWDYSKGK-------------CLKTYTGHKNEKYCIFANF 268
Query: 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-WSKNNYLLSASI- 373
+ + ++ ++ + I++K GH+ ++ + N + SA++
Sbjct: 269 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQK----LQGHTDVVISTACHPTENIIASAALE 324
Query: 374 -DKTVRLWR 381
DKT++LW+
Sbjct: 325 NDKTIKLWK 333
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 143
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 204 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H ++ ++KFSP+G++LAS+ D ++++W + + + ++ S + ++ +
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 98
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-K 364
S L D + + I S C L GHS + +++ +
Sbjct: 99 SNLLVSASDDKTLKIWD----VSSGKC--------------LKTLKGHSNYVFCCNFNPQ 140
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++S S D++VR+W V CL+ P HS+ V+ VHFN D + +S S DG RIW
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 199
Query: 424 VLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
S + + D V+ V + P+G+ + ++ + ++ S
Sbjct: 200 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 244
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V + C+
Sbjct: 123 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPA 169
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 170 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 223
Query: 364 KN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D T++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 284 YIWNLQTKEIV 294
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315
+KFSP+G+Y+ +A D ++LW + + C+ H +E +F +
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSKGK-------------CLKTYTGHKNEKYCIFANF 266
Query: 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-WSKNNYLLSASI- 373
+ + ++ ++ + I++K GH+ ++ + N + SA++
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQK----LQGHTDVVISTACHPTENIIASAALE 322
Query: 374 -DKTVRLWR 381
DKT++LW+
Sbjct: 323 NDKTIKLWK 331
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 127
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 188 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H ++ ++KFSP+G++LAS+ D ++++W + + + ++ S + ++ +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 82
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-K 364
S L D + + I S C L GHS + +++ +
Sbjct: 83 SNLLVSASDDKTLKIWD----VSSGKC--------------LKTLKGHSNYVFCCNFNPQ 124
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++S S D++VR+W V CL+ P HS+ V+ VHFN D + +S S DG RIW
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 183
Query: 424 VLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
S + + D V+ V + P+G+ + ++ + ++ S
Sbjct: 184 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V + C+
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPA 153
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 154 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 207
Query: 364 KN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D T++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 268 YIWNLQTKEIV 278
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315
+KFSP+G+Y+ +A D ++LW + + C+ H +E +F +
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGK-------------CLKTYTGHKNEKYCIFANF 250
Query: 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-WSKNNYLLSASI- 373
+ + ++ ++ + I++K GH+ ++ + N + SA++
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQK----LQGHTDVVISTACHPTENIIASAALE 306
Query: 374 -DKTVRLWR 381
DKT++LW+
Sbjct: 307 NDKTIKLWK 315
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 124
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 185 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNDLKLWDYSKGKCLKTYTGH 236
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 79/191 (41%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V C+
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM-------------CLKTLPA 150
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 151 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 204
Query: 364 KN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D ++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 205 PNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 265 YIWNLQTKEIV 275
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315
+KFSP+G+Y+ +A D ++LW + + C+ H +E +F +
Sbjct: 201 VKFSPNGKYILAATLDNDLKLWDYSKGK-------------CLKTYTGHKNEKYCIFANF 247
Query: 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-WSKNNYLLSASI- 373
+ + ++ ++ + I++K GH+ ++ + N + SA++
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEIVQK----LQGHTDVVISTACHPTENIIASAALE 303
Query: 374 -DKTVRLWR 381
DKT++LW+
Sbjct: 304 NDKTIKLWK 312
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 124
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 185 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H ++ ++KFSP+G++LAS+ D ++++W + + + ++ S + ++ +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 79
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-K 364
S L D + + I S C L GHS + +++ +
Sbjct: 80 SNLLVSASDDKTLKIWD----VSSGKC--------------LKTLKGHSNYVFCCNFNPQ 121
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++S S D++VR+W V CL+ P HS+ V+ VHFN D + +S S DG RIW
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 180
Query: 424 VLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
S + + D V+ V + P+G+ + ++ + ++ S
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 80/191 (41%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V C+
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM-------------CLKTLPA 150
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 151 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 204
Query: 364 KN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D T++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 265 YIWNLQTKEIV 275
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315
+KFSP+G+Y+ +A D ++LW + + C+ H +E +F +
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGK-------------CLKTYTGHKNEKYCIFANF 247
Query: 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-WSKNNYLLSASI- 373
+ + ++ ++ + I++K GH+ ++ + N + SA++
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEIVQK----LQGHTDVVISTACHPTENIIASAALE 303
Query: 374 -DKTVRLWR 381
DKT++LW+
Sbjct: 304 NDKTIKLWK 312
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 80 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 138
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 199 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 250
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 251 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 282
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H ++ ++KFSP+G++LAS+ D ++++W + + + ++ S + ++ +
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 93
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-K 364
S L D + + I S C L GHS + +++ +
Sbjct: 94 SNLLVSASDDKTLKIWD----VSSGKC--------------LKTLKGHSNYVFCCNFNPQ 135
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++S S D++VR+W V CL+ P HS+ V+ VHFN D + +S S DG RIW
Sbjct: 136 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 194
Query: 424 VLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
S + + D V+ V + P+G+ + ++ + ++ S
Sbjct: 195 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 239
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V + C+
Sbjct: 118 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPA 164
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 165 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 218
Query: 364 KN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D T++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 278
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 279 YIWNLQTKEIV 289
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315
+KFSP+G+Y+ +A D ++LW + + C+ H +E +F +
Sbjct: 215 VKFSPNGKYILAATLDNTLKLWDYSKGK-------------CLKTYTGHKNEKYCIFANF 261
Query: 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-WSKNNYLLSASI- 373
+ + ++ ++ + I++K GH+ ++ + N + SA++
Sbjct: 262 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQK----LQGHTDVVISTACHPTENIIASAALE 317
Query: 374 -DKTVRLWR 381
DKT++LW+
Sbjct: 318 NDKTIKLWK 326
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 127
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 188 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H ++ ++KFSP+G++LAS+ D ++++W + + + ++ S + ++ +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 82
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-K 364
S L D + + I S C L GHS + +++ +
Sbjct: 83 SNLLVSASDDKTLKIWD----VSSGKC--------------LKTLKGHSNYVFCCNFNPQ 124
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++S S D++VR+W V CL+ P HS+ V+ VHFN D + +S S DG RIW
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 183
Query: 424 VLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
S + + D V+ V + P+G+ + ++ + ++ S
Sbjct: 184 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V + C+
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPA 153
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 154 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 207
Query: 364 KN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D T++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 268 YIWNLQTKEIV 278
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315
+KFSP+G+Y+ +A D ++LW + + C+ H +E +F +
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGK-------------CLKTYTGHKNEKYCIFANF 250
Query: 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-WSKNNYLLSASI- 373
+ + ++ ++ + I++K GH+ ++ + N + SA++
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQK----LQGHTDVVISTACHPTENIIASAALE 306
Query: 374 -DKTVRLWR 381
DKT++LW+
Sbjct: 307 NDKTIKLWK 315
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 127
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 188 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H ++ ++KFSP+G++LAS+ D ++++W + + + ++ S + ++ +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 82
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-K 364
S L D + + I S C L GHS + +++ +
Sbjct: 83 SNLLVSASDDKTLKIWD----VSSGKC--------------LKTLKGHSNYVFCCNFNPQ 124
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++S S D++VR+W V CL+ P HS+ V+ VHFN D + +S S DG RIW
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 183
Query: 424 VLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
S + + D V+ V + P+G+ + ++ + ++ S
Sbjct: 184 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V + C+
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPA 153
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 154 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 207
Query: 364 KN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D T++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 268 YIWNLQTKEIV 278
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315
+KFSP+G+Y+ +A D ++LW + + C+ H +E +F +
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGK-------------CLKTYTGHKNEKYCIFANF 250
Query: 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-WSKNNYLLSASI- 373
+ + ++ ++ + I++K GH+ ++ + N + SA++
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQK----LQGHTDVVISTACHPTENIIASAALE 306
Query: 374 -DKTVRLWR 381
DKT++LW+
Sbjct: 307 NDKTIKLWK 315
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 68 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 126
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 187 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 238
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 239 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H ++ ++KFSP+G++LAS+ D ++++W + + + ++ S + ++ +
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 81
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-K 364
S L D + + I S C L GHS + +++ +
Sbjct: 82 SNLLVSASDDKTLKIWD----VSSGKC--------------LKTLKGHSNYVFCCNFNPQ 123
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++S S D++VR+W V CL+ P HS+ V+ VHFN D + +S S DG RIW
Sbjct: 124 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 182
Query: 424 VLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
S + + D V+ V + P+G+ + ++ + ++ S
Sbjct: 183 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V + C+
Sbjct: 106 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPA 152
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 153 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 206
Query: 364 KN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D T++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 207 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 266
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 267 YIWNLQTKEIV 277
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315
+KFSP+G+Y+ +A D ++LW + + C+ H +E +F +
Sbjct: 203 VKFSPNGKYILAATLDNTLKLWDYSKGK-------------CLKTYTGHKNEKYCIFANF 249
Query: 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-WSKNNYLLSASI- 373
+ + ++ ++ + I++K GH+ ++ + N + SA++
Sbjct: 250 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQK----LQGHTDVVISTACHPTENIIASAALE 305
Query: 374 -DKTVRLWR 381
DKT++LW+
Sbjct: 306 NDKTIKLWK 314
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 121
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 182 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H ++ ++KFSP+G++LAS+ D ++++W + + + ++ S + ++ +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 76
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-K 364
S L D + + I S C L GHS + +++ +
Sbjct: 77 SNLLVSASDDKTLKIWD----VSSGKC--------------LKTLKGHSNYVFCCNFNPQ 118
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++S S D++VR+W V CL+ P HS+ V+ VHFN D + +S S DG RIW
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 177
Query: 424 VLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
S + + D V+ V + P+G+ + ++ + ++ S
Sbjct: 178 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V + C+
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPA 147
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 148 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 201
Query: 364 KN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D T++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 262 YIWNLQTKEIV 272
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315
+KFSP+G+Y+ +A D ++LW + + C+ H +E +F +
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSKGK-------------CLKTYTGHKNEKYCIFANF 244
Query: 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-WSKNNYLLSASI- 373
+ + ++ ++ + I++K GH+ ++ + N + SA++
Sbjct: 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQK----LQGHTDVVISTACHPTENIIASAALE 300
Query: 374 -DKTVRLWR 381
DKT++LW+
Sbjct: 301 NDKTIKLWK 309
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 121
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 182 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H ++ ++KFSP+G++LAS+ D ++++W + + + ++ S + ++ +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 76
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-K 364
S L D + + I S C L GHS + +++ +
Sbjct: 77 SNLLVSASDDKTLKIWD----VSSGKC--------------LKTLKGHSNYVFCCNFNPQ 118
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++S S D++VR+W V CL+ P HS+ V+ VHFN D + +S S DG RIW
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 177
Query: 424 VLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
S + + D V+ V + P+G+ + ++ + ++ S
Sbjct: 178 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V + C+
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPA 147
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 148 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 201
Query: 364 KN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D T++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 262 YIWNLQTKEIV 272
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315
+KFSP+G+Y+ +A D ++LW + + C+ H +E +F +
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSKGK-------------CLKTYTGHKNEKYCIFANF 244
Query: 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-WSKNNYLLSASI- 373
+ + ++ ++ + I++K GH+ ++ + N + SA++
Sbjct: 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQK----LQGHTDVVISTACHPTENIIASAALE 300
Query: 374 -DKTVRLWR 381
DKT++LW+
Sbjct: 301 NDKTIKLWK 309
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 124
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 185 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H ++ ++KFSP+G++LAS+ D ++++W + + + ++ S + ++ +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 79
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-K 364
S L D + + I S C L GHS + +++ +
Sbjct: 80 SNLLVSASDDKTLKIWD----VSSGKC--------------LKTLKGHSNYVFCCNFNPQ 121
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++S S D++VR+W V CL+ P HS+ V+ VHFN D + +S S DG RIW
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 180
Query: 424 VLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
S + + D V+ V + P+G+ + ++ + ++ S
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V + C+
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPA 150
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 151 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 204
Query: 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D T++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 265 YIWNLQTKEIV 275
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 64 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 122
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 183 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 234
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 235 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H ++ ++KFSP+G++LAS+ D ++++W + + + ++ S + ++ +
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 77
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-K 364
S L D + + I S C L GHS + +++ +
Sbjct: 78 SNLLVSASDDKTLKIWD----VSSGKC--------------LKTLKGHSNYVFCCNFNPQ 119
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++S S D++VR+W V CL+ P HS+ V+ VHFN D + +S S DG RIW
Sbjct: 120 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 178
Query: 424 VLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
S + + D V+ V + P+G+ + ++ + ++ S
Sbjct: 179 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 223
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V + C+
Sbjct: 102 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPA 148
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 149 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 202
Query: 364 KN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D T++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 203 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 262
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 263 YIWNLQTKEIV 273
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315
+KFSP+G+Y+ +A D ++LW + + C+ H +E +F +
Sbjct: 199 VKFSPNGKYILAATLDNTLKLWDYSKGK-------------CLKTYTGHKNEKYCIFANF 245
Query: 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-WSKNNYLLSASI- 373
+ + ++ ++ + I++K GH+ ++ + N + SA++
Sbjct: 246 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQK----LQGHTDVVISTACHPTENIIASAALE 301
Query: 374 -DKTVRLWR 381
DKT++LW+
Sbjct: 302 NDKTIKLWK 310
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 124
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 185 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H ++ ++KFSP+G++LAS+ D ++++W + + + ++ S + ++ +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 79
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-K 364
S L D + + I S C L GHS + +++ +
Sbjct: 80 SNLLVSASDDKTLKIWD----VSSGKC--------------LKTLKGHSNYVFCCNFNPQ 121
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++S S D++VR+W V CL+ P HS+ V+ VHFN D + +S S DG RIW
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 180
Query: 424 VLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
S + + D V+ V + P+G+ + ++ + ++ S
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V + C+
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPA 150
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 151 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 204
Query: 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D T++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 265 YIWNLQTKEIV 275
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 59 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 117
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 178 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 229
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 230 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H ++ ++KFSP+G++LAS+ D ++++W + + + ++ S + ++ +
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 72
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-K 364
S L D + + I S C L GHS + +++ +
Sbjct: 73 SNLLVSASDDKTLKIWD----VSSGKC--------------LKTLKGHSNYVFCCNFNPQ 114
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++S S D++VR+W V CL+ P HS+ V+ VHFN D + +S S DG RIW
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 173
Query: 424 VLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
S + + D V+ V + P+G+ + ++ + ++ S
Sbjct: 174 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V + C+
Sbjct: 97 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPA 143
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 144 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 197
Query: 364 KN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D T++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 198 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 257
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 258 YIWNLQTKEIV 268
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315
+KFSP+G+Y+ +A D ++LW + + C+ H +E +F +
Sbjct: 194 VKFSPNGKYILAATLDNTLKLWDYSKGK-------------CLKTYTGHKNEKYCIFANF 240
Query: 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-WSKNNYLLSASI- 373
+ + ++ ++ + I++K GH+ ++ + N + SA++
Sbjct: 241 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQK----LQGHTDVVISTACHPTENIIASAALE 296
Query: 374 -DKTVRLWR 381
DKT++LW+
Sbjct: 297 NDKTIKLWK 305
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 124
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 185 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H ++ ++KFSP+G++LA++ D ++++W + + + ++ S + ++ +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 79
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-K 364
S L D + + I S C L GHS + +++ +
Sbjct: 80 SNLLVSASDDKTLKIWD----VSSGKC--------------LKTLKGHSNYVFCCNFNPQ 121
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++S S D++VR+W V CL+ P HS+ V+ VHFN D + +S S DG RIW
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 180
Query: 424 VLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
S + + D V+ V + P+G+ + ++ + ++ S
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V + C+
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPA 150
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 151 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 204
Query: 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D T++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 265 YIWNLQTKEIV 275
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315
+KFSP+G+Y+ +A D ++LW + + C+ H +E +F +
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGK-------------CLKTYTGHKNEKYCIFANF 247
Query: 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-WSKNNYLLSASI- 373
+ + ++ ++ + I++K GH+ ++ + N + SA++
Sbjct: 248 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQK----LQGHTDVVISTACHPTENIIASAALE 303
Query: 374 -DKTVRLWR 381
DKT++LW+
Sbjct: 304 NDKTIKLWK 312
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 352 GHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH I D++WS + N L+SAS DKT+++W V + CL+ HSNYV C +FNP N
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNL 120
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+SGS D VRIW V + + + V+AV + DG + S G CR ++ +
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGL 526
C+ + ++ +F P + ++ + D+ +++ + Y G
Sbjct: 181 Q-------CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGH 232
Query: 527 RRSGNQLSACFT-SDGKHIVSAGEDSNVYMWN 557
+ + A F+ + GK IVS ED+ VY+WN
Sbjct: 233 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 25/225 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H ++ ++KFSP+G++LAS+ D ++++W + + + ++ S + ++ +
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 75
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-K 364
S L D + + I S C L GHS + +++ +
Sbjct: 76 SNLLVSASDDKTLKIWD----VSSGKC--------------LKTLKGHSNYVFCCNFNPQ 117
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++S S D++VR+W V CL+ P HS+ V+ VHFN D + +S S DG RIW
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWD 176
Query: 424 VLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
S + + D V+ V + P+G+ + ++ + ++ S
Sbjct: 177 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H + F+P + S D VR+W V + C+
Sbjct: 100 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-------------CLKTLPA 146
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H + + +++ I+ S + + C ++ + L+ + + + + + +S
Sbjct: 147 HSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFS 200
Query: 364 KN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV--HFNPVDDNYFISGSIDGKV 419
N Y+L+A++D T++LW CL+ + H N C+ +F+ + +SGS D V
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 260
Query: 420 RIWAVLSCHVV 430
IW + + +V
Sbjct: 261 YIWNLQTKEIV 271
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315
+KFSP+G+Y+ +A D ++LW + + C+ H +E +F +
Sbjct: 197 VKFSPNGKYILAATLDNTLKLWDYSKGK-------------CLKTYTGHKNEKYCIFANF 243
Query: 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-WSKNNYLLSASI- 373
+ + ++ ++ + I++K GH+ ++ + N + SA++
Sbjct: 244 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQK----LQGHTDVVISTACHPTENIIASAALE 299
Query: 374 -DKTVRLWR 381
DKT++LW+
Sbjct: 300 NDKTIKLWK 308
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 105/229 (45%), Gaps = 29/229 (12%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSEL 308
H I+++K++ DG ++ S + V LW V+ + ++ E S I NH +
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN-AENHSGD- 205
Query: 309 KPLFMDKEKISILKSLRRTSESACVVFPPK----VFRILEK-PLHEFHGHSGEILDLSWS 363
L +D E + + V+ PK V++I EK P + GH G I L ++
Sbjct: 206 GSLGVDVEWV---------DDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256
Query: 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421
N LLSAS D T+R+W GN + F HS + + V D+ IS S+DG VR+
Sbjct: 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW--VGDDKVISCSMDGSVRL 314
Query: 422 WA-----VLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465
W+ +L+ +VD V I A DGQ V M G Y++
Sbjct: 315 WSLKQNTLLALSIVDGVPI----FAGRISQDGQKYAVAFMDGQVNVYDL 359
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 100/239 (41%), Gaps = 29/239 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ +Q H G + ++ ++P+ ++ SA DG + +W + ++ + + C +
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-----HCPWV--- 111
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVF--PPKVFRILEKPLHE-FHGHSGEILDL 360
++ F + L +SAC +F + R P+ GH G
Sbjct: 112 ----MECAFAPNGQSVACGGL----DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSC 163
Query: 361 SW--SKNNYLLSASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFIS 412
+ + L++ S D+T LW V + +F H+ V + N ++ N FIS
Sbjct: 164 QYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS 223
Query: 413 GSIDGKVRIW--AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469
GS D VR+W + S V + + +V + PDGQ GS G CR +++ H
Sbjct: 224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 63/329 (19%), Positives = 117/329 (35%), Gaps = 43/329 (13%)
Query: 387 CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-QIVTAVCYR 445
C + HS V + + P + N+ +S S DG++ +W L+ + + V +
Sbjct: 59 CRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 446 PDGQGGIVGSMMGDCRFYNVS-----DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500
P+GQ G + C +N+S D ++ + + H + C Q++P +
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSC------QYVPDQET 171
Query: 501 KVMVSCADSQ-----VRILQGPNVIGKYKGLRRSGNQLSACFTS-DGKHIVSAGEDSNVY 554
+++ D V Q ++ G + + LS S + +S D+ V
Sbjct: 172 RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231
Query: 555 MWNCI----------GHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHV 604
+W+ GHE + K +RF T + C L + Q++
Sbjct: 232 LWDLRITSRAVRTYHGHEGDI-NSVKFFPDGQRFGTGSDDGT--CRLFDMRTGHQLQVYN 288
Query: 605 SDDDSPEN--LAFAPARFSLGQEYVFESFPKG-CATWPEEKXXXXXXXXXXXXXHKSQYK 661
+ D +N FS+ +F + G C W H+ +
Sbjct: 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI- 347
Query: 662 FLKSSCLCTTSSHAWGLVIVTAGWDGRIR 690
SCL +S G + T WD ++
Sbjct: 348 ----SCLGLSSD---GSALCTGSWDKNLK 369
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 75/195 (38%), Gaps = 24/195 (12%)
Query: 246 IQAHDGSILTMKFSPDGQY-LASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNH 304
+ H G + ++ PD + L + D LW V +R++ F H
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE--------FPSGH 204
Query: 305 LSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364
+++ L I+ L + S S RI + + +HGH G+I + +
Sbjct: 205 TADVLSL-----SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP 259
Query: 365 NNYLL-SASIDKTVRLWRVGNDHCLRVF---PHSN-----YVTCVHFNPVDDNYFISGSI 415
+ + S D T RL+ + H L+V+ P N VT V F+ + +G
Sbjct: 260 DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS-ISGRLLFAGYS 318
Query: 416 DGKVRIWAVLSCHVV 430
+G +W L +V
Sbjct: 319 NGDCYVWDTLLAEMV 333
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 122/309 (39%), Gaps = 50/309 (16%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSEL 308
H + +KFS DG+YLA+ G + ++++V + V LS+
Sbjct: 63 HTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGS-----------------LVARLSDD 104
Query: 309 KPLFMDKEKISILKSLRRTSESACVVFPP-----------KVFRILE----KPLHEFHGH 353
D E ++ S V F P ++ RI + K + GH
Sbjct: 105 SAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH 164
Query: 354 SGEILDLSW-SKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS 412
+I L + + L+S S D+TVR+W + C + VT V +P D Y +
Sbjct: 165 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 224
Query: 413 GSIDGKVRIWAVLSCHVVDWVDI--------RQIVTAVCYRPDGQGGIVGSMMGDCRFYN 464
GS+D VR+W + +V+ +D + V +V + DGQ + GS+ + +N
Sbjct: 225 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284
Query: 465 VSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK 524
+ + + + D+ K P ++ + V+ + IL G G
Sbjct: 285 LQNANNKSDS--------KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 336
Query: 525 GLRRSGNQL 533
++SGN L
Sbjct: 337 WDKKSGNPL 345
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 113/282 (40%), Gaps = 37/282 (13%)
Query: 303 NHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362
NH + P +D + S+ +L++ + +++ P + R ++ LH+ H+ + + +
Sbjct: 13 NHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKF 72
Query: 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVF------------------PHSN-YVTCVHFN 403
S + L+ +KT +++RV + + P S+ Y+ V F+
Sbjct: 73 SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 132
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSMMGDCRF 462
P D + +G+ D +RIW + + +V + Q + ++ Y P G + GS R
Sbjct: 133 P-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191
Query: 463 YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--VI 520
+++ L I +T P D + D VR+ ++
Sbjct: 192 WDLRTGQCSLTLSI---------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 521 GKYKGLRRSGNQ-----LSACFTSDGKHIVSAGEDSNVYMWN 557
+ SG S FT DG+ +VS D +V +WN
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 95/250 (38%), Gaps = 53/250 (21%)
Query: 195 SLACVVDKQGEGERVRLNEEDAMFCSK---VQRVKVYHCKKRSKELSALYKGQE------ 245
S+ C V +GE + A C+K V RV R + SA K E
Sbjct: 65 SVVCCVKFSNDGEYL------ATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS 118
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT------EVDIPEIDPSCIY 299
+ D I ++ FSPDG++LA+ +D ++R+W +E+ ++ E DI +D Y
Sbjct: 119 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD-IENRKIVMILQGHEQDIYSLD----Y 173
Query: 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359
F S K + ++ + LR S + V + P
Sbjct: 174 FP----SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP------------- 216
Query: 360 LSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV-------DDNYFIS 412
Y+ + S+D+ VR+W + N H + V D +S
Sbjct: 217 ---GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273
Query: 413 GSIDGKVRIW 422
GS+D V++W
Sbjct: 274 GSLDRSVKLW 283
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 41/215 (19%)
Query: 233 RSKELSALYKGQ---EIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVED---ERL 285
R+ + L GQ + DG + T+ SP DG+Y+A+ D VR+W ERL
Sbjct: 187 RTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 286 -TEVDIPEIDPSCIY---FTVNHLSELKPLFMDKEKISILKSLRRTSES------ACVVF 335
+E + +Y FT + S + K+ L++ S+S C V
Sbjct: 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV- 304
Query: 336 PPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLW-RVGNDHCLRVFPH 393
+ GH +L ++ ++N+ Y+LS S D+ V W + + L + H
Sbjct: 305 -------------TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 351
Query: 394 SNYVTCV------HFNPVDDNYFISGSIDGKVRIW 422
N V V P + N F +GS D K RIW
Sbjct: 352 RNSVISVAVANGSSLGP-EYNVFATGSGDCKARIW 385
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 101/219 (46%), Gaps = 20/219 (9%)
Query: 350 FHGHSGEILDLSWSKN--NYLLSASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVH 401
GH+G + ++ + + +LSAS DKT+ +W++ D P HS++V+ V
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460
+ D + +SGS DG +R+W + + +V + V +V + D + + GS
Sbjct: 94 ISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 461 RFYNVSDNHLELDAEICVHS-KKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPN 518
+ +N +C ++ + ++ + ++ +F P S+ ++VSC D V++ N
Sbjct: 153 KLWNT--------LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Query: 519 VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557
K + +G + + DG S G+D +W+
Sbjct: 205 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 349 EFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN--DHCLRVFPHSNYVTCVHFNPV 405
F GH+ ++L +++S +N ++S S DKT++LW + ++ HS +V+CV F+P
Sbjct: 123 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182
Query: 406 DDN-YFISGSIDGKVRIWAVLSCHV-VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463
N +S D V++W + +C + + + + V PDG G G +
Sbjct: 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Query: 464 NVSDN-HL 470
++++ HL
Sbjct: 243 DLNEGKHL 250
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 219 CSKVQRVKVYH---CKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR 275
C + VKV++ CK ++ + H G + T+ SPDG AS G DG
Sbjct: 191 CGWDKLVKVWNLANCKLKTNHI----------GHTGYLNTVTVSPDGSLCASGGKDGQAM 240
Query: 276 LWQVVEDERLTEVDIPEI 293
LW + E + L +D +I
Sbjct: 241 LWDLNEGKHLYTLDGGDI 258
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 90/239 (37%), Gaps = 24/239 (10%)
Query: 233 RSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE 292
R +L+ + H +L++ FS D + + S D ++LW + + T D
Sbjct: 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESH 170
Query: 293 ID-PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351
+ SC+ F+ N P+ + ++K V+ + L H
Sbjct: 171 SEWVSCVRFSPN---SSNPIIVSCGWDKLVK----------------VWNLANCKLKTNH 211
Query: 352 -GHSGEILDLSWSKNNYL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY 409
GH+G + ++ S + L S D LW + L + + + F+P + Y
Sbjct: 212 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP--NRY 269
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
++ + ++IW + +VD + I T+ P + S G F +DN
Sbjct: 270 WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN 328
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 533 LSACFTSDGKHIVSAGEDSNVYMWNCIG 560
LS F+SD + IVS D + +WN +G
Sbjct: 132 LSVAFSSDNRQIVSGSRDKTIKLWNTLG 159
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 101/219 (46%), Gaps = 20/219 (9%)
Query: 350 FHGHSGEILDLSWSKN--NYLLSASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVH 401
GH+G + ++ + + +LSAS DKT+ +W++ D P HS++V+ V
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460
+ D + +SGS DG +R+W + + +V + V +V + D + + GS
Sbjct: 71 ISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 461 RFYNVSDNHLELDAEICVHS-KKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPN 518
+ +N +C ++ + ++ + ++ +F P S+ ++VSC D V++ N
Sbjct: 130 KLWNT--------LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Query: 519 VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557
K + +G + + DG S G+D +W+
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 349 EFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN--DHCLRVFPHSNYVTCVHFNPV 405
F GH+ ++L +++S +N ++S S DKT++LW + ++ HS +V+CV F+P
Sbjct: 100 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 159
Query: 406 DDN-YFISGSIDGKVRIWAVLSCHV-VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463
N +S D V++W + +C + + + + V PDG G G +
Sbjct: 160 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Query: 464 NVSDN-HL 470
++++ HL
Sbjct: 220 DLNEGKHL 227
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 219 CSKVQRVKVYH---CKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR 275
C + VKV++ CK ++ + H G + T+ SPDG AS G DG
Sbjct: 168 CGWDKLVKVWNLANCKLKTNHI----------GHTGYLNTVTVSPDGSLCASGGKDGQAM 217
Query: 276 LWQVVEDERLTEVDIPEI 293
LW + E + L +D +I
Sbjct: 218 LWDLNEGKHLYTLDGGDI 235
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 90/239 (37%), Gaps = 24/239 (10%)
Query: 233 RSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE 292
R +L+ + H +L++ FS D + + S D ++LW + + T D
Sbjct: 88 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESH 147
Query: 293 ID-PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351
+ SC+ F+ N P+ + ++K V+ + L H
Sbjct: 148 SEWVSCVRFSPN---SSNPIIVSCGWDKLVK----------------VWNLANCKLKTNH 188
Query: 352 -GHSGEILDLSWSKNNYL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY 409
GH+G + ++ S + L S D LW + L + + + F+P + Y
Sbjct: 189 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP--NRY 246
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
++ + ++IW + +VD + I T+ P + S G F +DN
Sbjct: 247 WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN 305
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 533 LSACFTSDGKHIVSAGEDSNVYMWNCIG 560
LS F+SD + IVS D + +WN +G
Sbjct: 109 LSVAFSSDNRQIVSGSRDKTIKLWNTLG 136
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 116/289 (40%), Gaps = 35/289 (12%)
Query: 203 QGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELS--ALYKGQEIQAHDGSILTMKFSP 260
+ E + +L EE A K+ V+++ +R + L + + ++ H +L M +
Sbjct: 19 EAESLKGKLEEERA----KLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCK 74
Query: 261 DGQYLASAGDDGVVRLWQVVEDERLTEVDIP-EIDPSCIYFTVNHLSELKPLFMDKEKIS 319
D + + S+ DG V +W + V +P +C Y L
Sbjct: 75 DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL-------- 126
Query: 320 ILKSLRRTSESACVVFPPKVFRI--LEKPLHEFHGHSGEILDLSWSKNNY-LLSASIDKT 376
++ C V+P + + H+ + S++ ++ +L+AS D T
Sbjct: 127 ---------DNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 377 VRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDD-NYFISGSIDGKVRIWAVLSCHVVDWVD 434
LW V + L+ F H V C+ P + N F+SG D K +W + S V +
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237
Query: 435 IRQI-VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482
+ V +V Y P G GS CR Y+ L D E+ ++SK+
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYD-----LRADREVAIYSKE 281
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 368 LLSASIDKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
L + D T+ +W V + + F H N V+ + +P D F SGS D +R+WA
Sbjct: 299 LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 95/256 (37%), Gaps = 32/256 (12%)
Query: 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-QIVTAVCYRPDGQGG 451
H N V C+ + D +S S DGKV +W + + V + V A Y P G
Sbjct: 63 HGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 121
Query: 452 IVGSMMGDCRFYNVS----DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507
G + C Y ++ +N + +H+ + C F D +++ +
Sbjct: 122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSAC------SFTNSD-MQILTASG 174
Query: 508 DSQVRI--LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN-----CIG 560
D + ++ ++ + G L + G VS G D +W+ C+
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
Query: 561 HEEPAHDQAKTIR---SLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAP 617
E ++R S + F + + A C L A++E ++ S E++ F
Sbjct: 235 AFETHESDVNSVRYYPSGDAFASGSDDAT--CRLYDLRADREVAIY-----SKESIIFGA 287
Query: 618 AR--FSLGQEYVFESF 631
+ FSL +F +
Sbjct: 288 SSVDFSLSGRLLFAGY 303
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 104/223 (46%), Gaps = 27/223 (12%)
Query: 348 HEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFPHSNYVTCVHFNP 404
++F GH+ ++L +++S +N ++S D +R+W V + H L H+++V+CV F+P
Sbjct: 103 YKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSP 162
Query: 405 -VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR---QIVTAVCYRPDGQGGIVGSMMGDC 460
+D +SG D V++W + + +V D++ VT+V PDG G
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDLATGRLV--TDLKGHTNYVTSVTVSPDGSLCASSDKDGVA 220
Query: 461 RFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPN 518
R ++++ E AP +I F P + M + + +RI L+ +
Sbjct: 221 RLWDLT------KGEALSEMAAGAPINQIC---FSP--NRYWMCAATEKGIRIFDLENKD 269
Query: 519 VIGKYKGLRRSGNQL-----SACFTSDGKHIVSAGEDSNVYMW 556
+I + + ++ S +++DG + S D+ + +W
Sbjct: 270 IIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 346 PLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHC-LRVFPHSNYVTCVHFN 403
P GHS + D++ S N N+ +SAS D ++RLW + N C + H+ V V F+
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 404 PVDDNYFISGSIDGKVRIWAV 424
P D+ +SG D +R+W V
Sbjct: 119 P-DNRQIVSGGRDNALRVWNV 138
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 24/143 (16%)
Query: 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEV----DIPEIDPSCIYF 300
+++ H + ++ SPDG AS+ DGV RLW + + E L+E+ I +I S +
Sbjct: 191 DLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRY 250
Query: 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360
+ +E D E I+ L + + + P E + +
Sbjct: 251 WMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVP-------------------ECVSI 291
Query: 361 SWSKN-NYLLSASIDKTVRLWRV 382
+WS + + L S D +R+W V
Sbjct: 292 AWSADGSTLYSGYTDNVIRVWGV 314
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 74/218 (33%), Gaps = 63/218 (28%)
Query: 234 SKELSALYKGQ---EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290
S L L GQ + H +L++ FSPD + + S G D +R+W V
Sbjct: 90 SLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV----------- 138
Query: 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350
E + L T +CV F P L+ P+
Sbjct: 139 -----------------------KGECMHTLSRGAHTDWVSCVRFSPS----LDAPV--- 168
Query: 351 HGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
++S D V++W + + H+NYVT V +P D +
Sbjct: 169 -----------------IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DGSL 210
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD 447
S DG R+W + + + + +C+ P+
Sbjct: 211 CASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPN 248
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 508 DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560
D +R+ N +YK L + + LS F+ D + IVS G D+ + +WN G
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG 140
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)
Query: 231 KKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290
KK K LS L ++ H ++ FS DGQ +AS G D +++++ E+L ++
Sbjct: 607 KKTIKNLSRLV----VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 662
Query: 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350
E + C F+ + S + DK K+ I S K +H +
Sbjct: 663 HEDEVLCCAFSSDD-SYIATCSADK-KVKIWDSATG------------------KLVHTY 702
Query: 351 HGHSGEILDLSWS-KNNYLLSA--SIDKTVRLWRVGNDHCLR-VFPHSNYVTCVHFNPVD 406
HS ++ ++ K+N+LL A S D ++LW + C +F H+N V F+P D
Sbjct: 703 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-D 761
Query: 407 DNYFISGSIDGKVRIWAVLS 426
D S S DG +R+W V S
Sbjct: 762 DELLASCSADGTLRLWDVRS 781
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 129/334 (38%), Gaps = 67/334 (20%)
Query: 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSE 307
H S+ +FSPD + LAS DG +RLW V +++ S SE
Sbjct: 748 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS---------SE 798
Query: 308 LKPLFMDKEKISILKSLRRTSESACVVFPPKVFRI---LEKPLHEFH-GHSGEILDLSWS 363
P D E I S + V KV L E H GH I +S
Sbjct: 799 DPP--EDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 856
Query: 364 KNNYLLSASIDK-TVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKV 419
++L ++ + V LW + D L+V H ++V V F+P D + F++ S D +
Sbjct: 857 PYDHLAVIALSQYCVELWNI--DSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTI 913
Query: 420 RIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479
R+W + ++Q + V + V ++ G L+L A
Sbjct: 914 RVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG-----------LQLIA----- 957
Query: 480 SKKKAPCKRITGFQFLPQDSSKVMVSCA--------------DSQVRILQGPN--VIGKY 523
+ +LP+ VSC D ++I++ PN V
Sbjct: 958 -------GKTGQIDYLPE----AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 1006
Query: 524 KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557
G +++ + FT+DGK ++S+ EDS + +WN
Sbjct: 1007 VGHKKAVRHIQ--FTADGKTLISSSEDSVIQVWN 1038
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 93/209 (44%), Gaps = 32/209 (15%)
Query: 242 KGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ---VVEDERLT---EVDIPEIDP 295
K + + H + + FSPDG +A DD +R+W+ V ++ + E+D+ +
Sbjct: 881 KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQEN 940
Query: 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKV-----------FRILE 344
+ V+++ L+ + +I L ++ +C P + +I+E
Sbjct: 941 ETMVLAVDNIRGLQLIAGKTGQIDYLPE----AQVSCCCLSPHLEYVAFGDEDGAIKIIE 996
Query: 345 KPLHEFH----GHSGEILDLSWSKN-NYLLSASIDKTVRL--WRVGNDHCLRVFPHSNYV 397
P + GH + + ++ + L+S+S D +++ W+ G+ VF ++
Sbjct: 997 LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----YVFLQAHQE 1052
Query: 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
T F + D+ +S S DG V++W V++
Sbjct: 1053 TVKDFRLLQDSRLLSWSFDGTVKVWNVIT 1081
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285
E++ H+G + FS DG LA+ D+G +R+W V + + L
Sbjct: 1128 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1169
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 76/190 (40%), Gaps = 35/190 (18%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+QAH ++ + D + L S DG V++W V+ E D +C TV
Sbjct: 1047 LQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGR-------IERDFTCHQGTVLSC 1098
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365
+ + D K S S SA F +L PLHE GH+G + ++S +
Sbjct: 1099 A----ISSDATKFS--------STSADKTAKIWSFDLLS-PLHELKGHNGCVRCSAFSLD 1145
Query: 366 NYLLSASIDK-TVRLWRVGNDHCLR----------VFPHSNYVTCVHFNPVDDNYFISGS 414
LL+ D +R+W V + L H +VT V F+P D +S
Sbjct: 1146 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP-DSKTLVSAG 1204
Query: 415 IDGKVRIWAV 424
G ++ W V
Sbjct: 1205 --GYLKWWNV 1212
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)
Query: 231 KKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290
KK K LS L ++ H ++ FS DGQ +AS G D +++++ E+L ++
Sbjct: 600 KKTIKNLSRLV----VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 655
Query: 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350
E + C F+ + S + DK K+ I S K +H +
Sbjct: 656 HEDEVLCCAFSSDD-SYIATCSADK-KVKIWDSAT------------------GKLVHTY 695
Query: 351 HGHSGEILDLSWS-KNNYLLSA--SIDKTVRLWRVGNDHCLR-VFPHSNYVTCVHFNPVD 406
HS ++ ++ K+N+LL A S D ++LW + C +F H+N V F+P D
Sbjct: 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-D 754
Query: 407 DNYFISGSIDGKVRIWAVLS 426
D S S DG +R+W V S
Sbjct: 755 DELLASCSADGTLRLWDVRS 774
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 129/334 (38%), Gaps = 67/334 (20%)
Query: 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSE 307
H S+ +FSPD + LAS DG +RLW V +++ S SE
Sbjct: 741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS---------SE 791
Query: 308 LKPLFMDKEKISILKSLRRTSESACVVFPPKVFRI---LEKPLHEFH-GHSGEILDLSWS 363
P D E I S + V KV L E H GH I +S
Sbjct: 792 DPP--EDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849
Query: 364 KNNYLLSASIDK-TVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKV 419
++L ++ + V LW + D L+V H ++V V F+P D + F++ S D +
Sbjct: 850 PYDHLAVIALSQYCVELWNI--DSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTI 906
Query: 420 RIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479
R+W + ++Q + V + V ++ G L+L A
Sbjct: 907 RVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG-----------LQLIA----- 950
Query: 480 SKKKAPCKRITGFQFLPQDSSKVMVSCA--------------DSQVRILQGPN--VIGKY 523
+ +LP+ VSC D ++I++ PN V
Sbjct: 951 -------GKTGQIDYLPE----AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 999
Query: 524 KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557
G +++ + FT+DGK ++S+ EDS + +WN
Sbjct: 1000 VGHKKAVRHIQ--FTADGKTLISSSEDSVIQVWN 1031
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 93/209 (44%), Gaps = 32/209 (15%)
Query: 242 KGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ---VVEDERLT---EVDIPEIDP 295
K + + H + + FSPDG +A DD +R+W+ V ++ + E+D+ +
Sbjct: 874 KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQEN 933
Query: 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKV-----------FRILE 344
+ V+++ L+ + +I L ++ +C P + +I+E
Sbjct: 934 ETMVLAVDNIRGLQLIAGKTGQIDYLPE----AQVSCCCLSPHLEYVAFGDEDGAIKIIE 989
Query: 345 KPLHEFH----GHSGEILDLSWSKN-NYLLSASIDKTVRL--WRVGNDHCLRVFPHSNYV 397
P + GH + + ++ + L+S+S D +++ W+ G+ VF ++
Sbjct: 990 LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----YVFLQAHQE 1045
Query: 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
T F + D+ +S S DG V++W V++
Sbjct: 1046 TVKDFRLLQDSRLLSWSFDGTVKVWNVIT 1074
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285
E++ H+G + FS DG LA+ D+G +R+W V + + L
Sbjct: 1121 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 76/190 (40%), Gaps = 35/190 (18%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+QAH ++ + D + L S DG V++W V+ E D +C TV
Sbjct: 1040 LQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGR-------IERDFTCHQGTVLSC 1091
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365
+ + D K S S SA F +L PLHE GH+G + ++S +
Sbjct: 1092 A----ISSDATKFS--------STSADKTAKIWSFDLLS-PLHELKGHNGCVRCSAFSLD 1138
Query: 366 NYLLSASIDK-TVRLWRVGNDHCLR----------VFPHSNYVTCVHFNPVDDNYFISGS 414
LL+ D +R+W V + L H +VT V F+P D +S
Sbjct: 1139 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP-DSKTLVSAG 1197
Query: 415 IDGKVRIWAV 424
G ++ W V
Sbjct: 1198 --GYLKWWNV 1205
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/330 (20%), Positives = 121/330 (36%), Gaps = 54/330 (16%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI-PEIDPSCIYFTV 302
+ ++ H I M + D + L SA DG + +W ++ + + +C Y
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 303 NHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362
+ L ++ C ++ K + E GH+G + +
Sbjct: 109 GNYVACGGL-----------------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151
Query: 363 SKNNYLLSASIDKTVRLWRV-GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421
+N ++++S D T LW + H+ V + P D F+SG+ D ++
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKL 210
Query: 422 WAV--------LSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473
W V + H D + A+C+ P+G GS CR ++ L D
Sbjct: 211 WDVREGMCRQTFTGHESD-------INAICFFPNGNAFATGSDDATCRLFD-----LRAD 258
Query: 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK----GLRRS 529
E+ +S C IT F S +++++ D NV K G+
Sbjct: 259 QELMTYSHDNIICG-ITSVSF--SKSGRLLLAGYDD-----FNCNVWDALKADRAGVLAG 310
Query: 530 GNQLSACF--TSDGKHIVSAGEDSNVYMWN 557
+ +C T DG + + DS + +WN
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 76/204 (37%), Gaps = 31/204 (15%)
Query: 227 VYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286
+Y+ K R + +E+ H G + +F D Q + S+GD LW + ++ T
Sbjct: 123 IYNLKTREGNVRV---SRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCALWDIETGQQTT 178
Query: 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346
H ++ L S+ R AC K++ + E
Sbjct: 179 T-------------FTGHTGDVMSL-------SLAPDTRLFVSGACDA-SAKLWDVREGM 217
Query: 347 LHE-FHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFPHSNY---VTCVH 401
+ F GH +I + + N N + S D T RL+ + D L + H N +T V
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 402 FNPVDDNYFISGSIDGKVRIWAVL 425
F+ ++G D +W L
Sbjct: 278 FSK-SGRLLLAGYDDFNCNVWDAL 300
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/330 (20%), Positives = 121/330 (36%), Gaps = 54/330 (16%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI-PEIDPSCIYFTV 302
+ ++ H I M + D + L SA DG + +W ++ + + +C Y
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 303 NHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362
+ L ++ C ++ K + E GH+G + +
Sbjct: 109 GNYVACGGL-----------------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151
Query: 363 SKNNYLLSASIDKTVRLWRV-GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421
+N ++++S D T LW + H+ V + P D F+SG+ D ++
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKL 210
Query: 422 WAV--------LSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473
W V + H D + A+C+ P+G GS CR ++ L D
Sbjct: 211 WDVREGMCRQTFTGHESD-------INAICFFPNGNAFATGSDDATCRLFD-----LRAD 258
Query: 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK----GLRRS 529
E+ +S C IT F S +++++ D NV K G+
Sbjct: 259 QELMTYSHDNIICG-ITSVSF--SKSGRLLLAGYDD-----FNCNVWDALKADRAGVLAG 310
Query: 530 GNQLSACF--TSDGKHIVSAGEDSNVYMWN 557
+ +C T DG + + DS + +WN
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 76/204 (37%), Gaps = 31/204 (15%)
Query: 227 VYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286
+Y+ K R + +E+ H G + +F D Q + S+GD LW + ++ T
Sbjct: 123 IYNLKTREGNVRV---SRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCALWDIETGQQTT 178
Query: 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346
H ++ L S+ R AC K++ + E
Sbjct: 179 T-------------FTGHTGDVMSL-------SLAPDTRLFVSGACDA-SAKLWDVREGM 217
Query: 347 LHE-FHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFPHSNY---VTCVH 401
+ F GH +I + + N N + S D T RL+ + D L + H N +T V
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 402 FNPVDDNYFISGSIDGKVRIWAVL 425
F+ ++G D +W L
Sbjct: 278 FSK-SGRLLLAGYDDFNCNVWDAL 300
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/330 (20%), Positives = 121/330 (36%), Gaps = 54/330 (16%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI-PEIDPSCIYFTV 302
+ ++ H I M + D + L SA DG + +W ++ + + +C Y
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 303 NHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362
+ L ++ C ++ K + E GH+G + +
Sbjct: 109 GNYVACGGL-----------------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151
Query: 363 SKNNYLLSASIDKTVRLWRV-GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421
+N ++++S D T LW + H+ V + P D F+SG+ D ++
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKL 210
Query: 422 WAV--------LSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473
W V + H D + A+C+ P+G GS CR ++ L D
Sbjct: 211 WDVREGMCRQTFTGHESD-------INAICFFPNGNAFATGSDDATCRLFD-----LRAD 258
Query: 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK----GLRRS 529
E+ +S C IT F S +++++ D NV K G+
Sbjct: 259 QELMTYSHDNIICG-ITSVSF--SKSGRLLLAGYDD-----FNCNVWDALKADRAGVLAG 310
Query: 530 GNQLSACF--TSDGKHIVSAGEDSNVYMWN 557
+ +C T DG + + DS + +WN
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 76/204 (37%), Gaps = 31/204 (15%)
Query: 227 VYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286
+Y+ K R + +E+ H G + +F D Q + S+GD LW + ++ T
Sbjct: 123 IYNLKTREGNVRV---SRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCALWDIETGQQTT 178
Query: 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346
H ++ L S+ R AC K++ + E
Sbjct: 179 T-------------FTGHTGDVMSL-------SLAPDTRLFVSGACDA-SAKLWDVREGM 217
Query: 347 LHE-FHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFPHSNY---VTCVH 401
+ F GH +I + + N N + S D T RL+ + D L + H N +T V
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 402 FNPVDDNYFISGSIDGKVRIWAVL 425
F+ ++G D +W L
Sbjct: 278 FSK-SGRLLLAGYDDFNCNVWDAL 300
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/330 (20%), Positives = 121/330 (36%), Gaps = 54/330 (16%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI-PEIDPSCIYFTV 302
+ ++ H I M + D + L SA DG + +W ++ + + +C Y
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 303 NHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362
+ L ++ C ++ K + E GH+G + +
Sbjct: 120 GNYVACGGL-----------------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 162
Query: 363 SKNNYLLSASIDKTVRLWRV-GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421
+N ++++S D T LW + H+ V + P D F+SG+ D ++
Sbjct: 163 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKL 221
Query: 422 WAV--------LSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473
W V + H D + A+C+ P+G GS CR ++ L D
Sbjct: 222 WDVREGMCRQTFTGHESD-------INAICFFPNGNAFATGSDDATCRLFD-----LRAD 269
Query: 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK----GLRRS 529
E+ +S C IT F S +++++ D NV K G+
Sbjct: 270 QELMTYSHDNIICG-ITSVSF--SKSGRLLLAGYDD-----FNCNVWDALKADRAGVLAG 321
Query: 530 GNQLSACF--TSDGKHIVSAGEDSNVYMWN 557
+ +C T DG + + DS + +WN
Sbjct: 322 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 76/204 (37%), Gaps = 31/204 (15%)
Query: 227 VYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286
+Y+ K R + +E+ H G + +F D Q + S+GD LW + ++ T
Sbjct: 134 IYNLKTREGNVRV---SRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCALWDIETGQQTT 189
Query: 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346
H ++ L S+ R AC K++ + E
Sbjct: 190 T-------------FTGHTGDVMSL-------SLAPDTRLFVSGACDA-SAKLWDVREGM 228
Query: 347 LHE-FHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFPHSNY---VTCVH 401
+ F GH +I + + N N + S D T RL+ + D L + H N +T V
Sbjct: 229 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 288
Query: 402 FNPVDDNYFISGSIDGKVRIWAVL 425
F+ ++G D +W L
Sbjct: 289 FSK-SGRLLLAGYDDFNCNVWDAL 311
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/330 (20%), Positives = 121/330 (36%), Gaps = 54/330 (16%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI-PEIDPSCIYFTV 302
+ ++ H I M + D + L SA DG + +W ++ + + +C Y
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 303 NHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362
+ L ++ C ++ K + E GH+G + +
Sbjct: 109 GNYVACGGL-----------------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151
Query: 363 SKNNYLLSASIDKTVRLWRV-GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421
+N ++++S D T LW + H+ V + P D F+SG+ D ++
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKL 210
Query: 422 WAV--------LSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473
W V + H D + A+C+ P+G GS CR ++ L D
Sbjct: 211 WDVREGMCRQTFTGHESD-------INAICFFPNGNAFATGSDDATCRLFD-----LRAD 258
Query: 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK----GLRRS 529
E+ +S C IT F S +++++ D NV K G+
Sbjct: 259 QELMTYSHDNIICG-ITSVSF--SKSGRLLLAGYDD-----FNCNVWDALKADRAGVLAG 310
Query: 530 GNQLSACF--TSDGKHIVSAGEDSNVYMWN 557
+ +C T DG + + DS + +WN
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 76/204 (37%), Gaps = 31/204 (15%)
Query: 227 VYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286
+Y+ K R + +E+ H G + +F D Q + S+GD LW + ++ T
Sbjct: 123 IYNLKTREGNVRV---SRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCALWDIETGQQTT 178
Query: 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346
H ++ L S+ R AC K++ + E
Sbjct: 179 T-------------FTGHTGDVMSL-------SLAPDTRLFVSGACDA-SAKLWDVREGM 217
Query: 347 LHE-FHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFPHSNY---VTCVH 401
+ F GH +I + + N N + S D T RL+ + D L + H N +T V
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277
Query: 402 FNPVDDNYFISGSIDGKVRIWAVL 425
F+ ++G D +W L
Sbjct: 278 FSK-SGRLLLAGYDDFNCNVWDAL 300
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 347 LHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF----PHSNYVTCVHF 402
+H GH + K+N L+S + D TV++W + CL+ H + VTC+ F
Sbjct: 312 IHTLTGHQSLTSGME-LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 370
Query: 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV 453
N N+ I+ S DG V++W + + IR +VT G GG+V
Sbjct: 371 NK---NFVITSSDDGTVKLWDLKTGEF-----IRNLVT---LESGGSGGVV 410
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 86/394 (21%), Positives = 151/394 (38%), Gaps = 97/394 (24%)
Query: 246 IQAHDGSILT-MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNH 304
++ HD ++T ++F G + S DD +++W V + C+ V H
Sbjct: 114 LKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGK-------------CLRTLVGH 158
Query: 305 LSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364
+ M ++ I I S RT + V+ + + +H +GH+ + + +
Sbjct: 159 TGGVWSSQM-RDNIIISGSTDRTLK----VWNAET----GECIHTLYGHTSTVRCMHLHE 209
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIW- 422
++S S D T+R+W + CL V H V CV + D +SG+ D V++W
Sbjct: 210 KR-VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWD 265
Query: 423 -AVLSCHVVDWVDIRQIVTAVCY--RPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479
+C + Q T Y + DG + GS+ R ++V + C+H
Sbjct: 266 PETETC-----LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-------CIH 313
Query: 480 SKKKAPCKRITGFQFLP---QDSSKVMVSC-ADSQVRI-----------LQGPNVIGKYK 524
+ +TG Q L + ++VS ADS V+I LQGPN
Sbjct: 314 T--------LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPN------ 359
Query: 525 GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASI 584
C + ++++ +D V +W+ + IR+L + S
Sbjct: 360 ----KHQSAVTCLQFNKNFVITSSDDGTVKLWDL--------KTGEFIRNLVTLESGGSG 407
Query: 585 AIPW----------CGLKCGNAEKEPQLHVSDDD 608
+ W C + N +E +L V D D
Sbjct: 408 GVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 367 YLLSASIDKTVRLWRVGNDHCL-RVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424
Y+LS S D TV+LW N+ L + F H ++V CV FNP D + F SG +D V++W++
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 367 YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
Y+++AS D T+++W C+ H + V+ F+P ISGS DG ++IW
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIW 255
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 20/135 (14%)
Query: 350 FHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGND--HCLRVFPHSNYVTCVHFNPV 405
F GH ++ ++++ + S +D+TV++W +G + V V + P+
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 406 DDN-YFISGSIDGKVRIW--------AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM 456
D Y I+ S D ++IW A L H+ + V+ + P I GS
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN-------VSFAVFHPTLPIIISGSE 248
Query: 457 MGDCRFYNVSDNHLE 471
G + +N S +E
Sbjct: 249 DGTLKIWNSSTYKVE 263
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 29/212 (13%)
Query: 231 KKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290
KK LS L ++ H ++ FS DGQ +AS G D +++++ E+L E+
Sbjct: 606 KKNITNLSRLV----VRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKA 661
Query: 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350
E + C F+ + + +DK K+ I S+ T E +H +
Sbjct: 662 HEDEVLCCAFSTDD-RFIATCSVDK-KVKIWNSM--TGE----------------LVHTY 701
Query: 351 HGHSGEILDLSWSKNNY---LLSASIDKTVRLWRVGNDHCLR-VFPHSNYVTCVHFNPVD 406
HS ++ ++ +++ L + S D ++LW + C +F H+N V F+P D
Sbjct: 702 DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-D 760
Query: 407 DNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438
D S S DG +++W S + ++++Q
Sbjct: 761 DKLLASCSADGTLKLWDATSANERKSINVKQF 792
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 28/207 (13%)
Query: 242 KGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ---VVEDERLT---EVDIPEIDP 295
K + + H + + FSPDG ++ DD +RLW+ V ++ + EVD+ +
Sbjct: 880 KVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQEN 939
Query: 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKV-----------FRILE 344
+ V+H+ L+ + +I L ++ +C P + ILE
Sbjct: 940 EVMVLAVDHIRRLQLINGRTGQIDYLTE----AQVSCCCLSPHLQYIAFGDENGAIEILE 995
Query: 345 ----KPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTC 399
+ H + + ++ + L+S+S D +++W D C +F + T
Sbjct: 996 LVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKC--IFLRGHQETV 1053
Query: 400 VHFNPVDDNYFISGSIDGKVRIWAVLS 426
F + ++ +S S DG V++W +++
Sbjct: 1054 KDFRLLKNSRLLSWSFDGTVKVWNIIT 1080
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/334 (21%), Positives = 122/334 (36%), Gaps = 39/334 (11%)
Query: 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSE 307
H S+ +FSPD + LAS DG ++LW +++ + F +N
Sbjct: 747 GHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQ-------FFLN---- 795
Query: 308 LKPLFMDKEKISILKSLRRTSESACVVFPPKVFRI---LEKPLHEFH-GHSGEILDLSWS 363
L+ D E I S V K+F L E H GH I +S
Sbjct: 796 LEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFS 855
Query: 364 KNNYLLSASIDK-TVRLWRV-GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421
N+L ++ + V LW H ++V V F+P D + F++ S D +R+
Sbjct: 856 PQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSP-DGSSFLTSSDDQTIRL 914
Query: 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481
W V ++Q V V ++ + + + + N ++ E V
Sbjct: 915 WETKKVCKNSAVMLKQEVDVV-FQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCC 973
Query: 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDG 541
+P + F + + IL+ N + FT+D
Sbjct: 974 CLSPHLQYIAF------------GDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADE 1021
Query: 542 KHIVSAGEDSNVYMWN-----CI---GHEEPAHD 567
K ++S+ +D+ + +WN CI GH+E D
Sbjct: 1022 KTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKD 1055
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 346 PLHEFHGHSGEILDLSWSKNNYLLSASIDK-TVRLWRVGNDHCLRV---------FPHSN 395
PLHE GH+G + ++S ++ LL+ D +R+W V N L + H
Sbjct: 1125 PLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGG 1184
Query: 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
+VT + F+P D IS G ++ W V++
Sbjct: 1185 WVTDLCFSP-DGKMLISAG--GYIKWWNVVT 1212
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285
E++ H+G + FS D LA+ D+G +R+W V E L
Sbjct: 1127 HELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELL 1168
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 350 FHGHSGEILDLSWSKNNYLLSASIDKTVRLWRV--GNDHCLRVFPHSNYVTCVHFNPVDD 407
GH + D KN+ LLS S D TV++W + GN V ++C + D
Sbjct: 1046 LRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISH--DA 1103
Query: 408 NYFISGSIDGKVRIWA---VLSCHVVDWVDIR---QIVTAVCYRPDGQGGIVGSMMGDCR 461
F S S D +IW+ +L H ++R V + D G G+ R
Sbjct: 1104 TKFSSTSADKTAKIWSFDLLLPLH-----ELRGHNGCVRCSAFSVDSTLLATGDDNGEIR 1158
Query: 462 FYNVSDNHL 470
+NVS+ L
Sbjct: 1159 IWNVSNGEL 1167
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283
H G + + FSPDG+ L SAG G ++ W VV E
Sbjct: 1181 THGGWVTDLCFSPDGKMLISAG--GYIKWWNVVTGE 1214
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 367 YLLSASIDKTVRLWRVGNDHCL-RVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424
Y+LS S D TV+LW N+ L + F H ++V CV FNP D + F SG +D V++W++
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 367 YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
Y+++AS D T+++W C+ H + V+ F+P ISGS DG ++IW
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIW 255
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 367 YLLSASIDKTVRLWRVGNDHCL-RVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424
Y+LS S D TV+LW N+ L + F H ++V CV FNP D + F SG +D V++W++
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 367 YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
Y+++AS D T+++W C+ H + V+ F+P ISGS DG ++IW
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIW 255
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 20/135 (14%)
Query: 350 FHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGND--HCLRVFPHSNYVTCVHFNPV 405
F GH ++ ++++ + S +D+TV++W +G + V V + P+
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 406 DDN-YFISGSIDGKVRIW--------AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM 456
D Y I+ S D ++IW A L H+ + V+ + P I GS
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN-------VSFAVFHPTLPIIISGSE 248
Query: 457 MGDCRFYNVSDNHLE 471
G + +N S +E
Sbjct: 249 DGTLKIWNSSTYKVE 263
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 367 YLLSASIDKTVRLWRVGNDHCL-RVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424
Y+LS S D TV+LW N+ L + F H ++V CV FNP D + F SG +D V++W++
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 367 YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
Y+++AS D T+++W C+ H + V+ F+P ISGS DG ++IW
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIW 255
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 20/135 (14%)
Query: 350 FHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGND--HCLRVFPHSNYVTCVHFNPV 405
F GH ++ ++++ + S +D+TV++W +G + V V + P+
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 406 DDN-YFISGSIDGKVRIW--------AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM 456
D Y I+ S D ++IW A L H+ + V+ + P I GS
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN-------VSFAVFHPTLPIIISGSE 248
Query: 457 MGDCRFYNVSDNHLE 471
G + +N S +E
Sbjct: 249 DGTLKIWNSSTYKVE 263
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 347 LHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV 405
+ +GH I L + ++ ++S S D T+RLW + CLRV H V C+ F
Sbjct: 289 VRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--- 344
Query: 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYR 445
D+ +SG+ DGK+++W +++ +D R +C R
Sbjct: 345 DNKRIVSGAYDGKIKVWDLVAA-----LDPRAPAGTLCLR 379
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 26/180 (14%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ H GS+L +++ D + + + D VR+W V E L T+ H
Sbjct: 169 LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN--------------TLIHH 212
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365
E + + S R+ + P + L + L H + ++D +
Sbjct: 213 CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI--TLRRVL-VGHRAAVNVVDFD---D 266
Query: 366 NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424
Y++SAS D+T+++W +R H + C+ + D +SGS D +R+W +
Sbjct: 267 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDI 323
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 30/174 (17%)
Query: 261 DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320
D Q + S D +++W D+ E C H + L D E++ I
Sbjct: 142 DDQKIVSGLRDNTIKIW----DKNTLE---------CKRILTGHTGSVLCLQYD-ERVII 187
Query: 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLW 380
S S+S V+ +L +H H +L L ++ N +++ S D+++ +W
Sbjct: 188 TGS----SDSTVRVWDVNTGEMLNTLIH----HCEAVLHLRFN-NGMMVTCSKDRSIAVW 238
Query: 381 RVGN--DHCLR--VFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430
+ + D LR + H V V F DD Y +S S D +++W +C V
Sbjct: 239 DMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFV 289
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 33/189 (17%)
Query: 380 WRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW--AVLSCHVVDWVDIRQ 437
WR G R+ S V+ DD +SG D ++IW L C ++
Sbjct: 116 WRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC--------KR 167
Query: 438 IVT-----AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492
I+T +C + D + I GS R ++V+ + +H C+ +
Sbjct: 168 ILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEM---LNTLIHH-----CEAVLHL 219
Query: 493 QFLPQDSSKVMVSCA-DSQVRI--LQGPNVIGKYKGLRRSGNQLSACFTS-DGKHIVSAG 548
+F ++ +MV+C+ D + + + P I + L G++ + D K+IVSA
Sbjct: 220 RF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVL--VGHRAAVNVVDFDDKYIVSAS 273
Query: 549 EDSNVYMWN 557
D + +WN
Sbjct: 274 GDRTIKVWN 282
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 19/189 (10%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV---------VEDERLTEVDIPEID 294
+ + HD ++ ++ P+G ++ SA D +++W+V + P D
Sbjct: 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354
+ I N + + KE + L+ R E C+ + P E +
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVE--CISWAP------ESSYSSISEAT 297
Query: 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISG 413
G S +LLS S DKT+++W V CL H N+V V F+ + +S
Sbjct: 298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSC 356
Query: 414 SIDGKVRIW 422
+ D +R+W
Sbjct: 357 ADDKTLRVW 365
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 347 LHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNP 404
+ HGH + +S N ++++SAS DKT+++W V +C++ F H +V V N
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244
Query: 405 VDDNYFISGSIDGKVRIWAVLSCHV-VDWVDIRQIVTAVCYRPDGQGGIVGSMMG 458
D S S D VR+W V + + + R +V + + P+ + G
Sbjct: 245 -DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 298
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 33/204 (16%)
Query: 236 ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE-------V 288
E+ Y + H + ++ + DG +AS +D VR+W V E E V
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 289 DIPEIDPSCIYFTVNHL--SELK------PLFMDKEKISILKSLRRTSESACVVFPPKVF 340
+ P Y +++ SE K P + + +K + S C
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK-MWDVSTGMC-------- 330
Query: 341 RILEKPLHEFHGHSGEILDLSW-SKNNYLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVT 398
L GH + + + S ++LS + DKT+R+W N C++ H ++VT
Sbjct: 331 ------LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 384
Query: 399 CVHFNPVDDNYFISGSIDGKVRIW 422
+ F+ Y ++GS+D V++W
Sbjct: 385 SLDFHKTAP-YVVTGSVDQTVKVW 407
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 352 GHSGEILDLSWSKNNYLL-SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH+ + D+S+ + LL S S D T++LW C+R H + V+ V P D +
Sbjct: 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD-H 206
Query: 410 FISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGD 459
+S S D +++W V + + V + R+ V V RP+ G ++ S D
Sbjct: 207 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSND 255
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 499 SSKVMVSC-ADSQVRI--LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYM 555
S K++ SC AD +++ QG I G N S +G HIVSA D + M
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHG--HDHNVSSVSIMPNGDHIVSASRDKTIKM 218
Query: 556 W 556
W
Sbjct: 219 W 219
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 116/282 (41%), Gaps = 63/282 (22%)
Query: 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFN 403
P+ F GHS + D + + + Y LSAS DKT+RLW V + F H + V V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463
+ ISGS D +++W + +G + +++G
Sbjct: 117 K-KASMIISGSRDKTIKVWTI------------------------KGQCLATLLG----- 146
Query: 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIG 521
H + +++ V +KA DS ++ + D V+ L +
Sbjct: 147 -----HNDWVSQVRVVPNEKA-----------DDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 522 KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE----PAHDQAKTIR-SLE 576
+ G + N L+A + DG I SAG+D + +WN + A D+ ++ S
Sbjct: 191 DFIGHNSNINTLTA--SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 577 RFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPA 618
R+ A+ A G+K + +PQ ++ DD PE ++ A
Sbjct: 249 RYWLAAATA---TGIKVFSL--DPQ-YLVDDLRPEFAGYSKA 284
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 92/223 (41%), Gaps = 26/223 (11%)
Query: 167 LMDEIVEKESSA--AGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCSKVQR 224
+M ++K++S +G ++ K W + + LA ++ +VR+ + V
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 225 VKVYHCKK-RSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283
+ + K ++ L+ + H+ +I T+ SPDG +ASAG DG + LW + +
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL 343
+ +T++ E+ L + L + + VF ++
Sbjct: 230 AM--------------YTLSAQDEVFSLAFSPNRY----WLAAATATGIKVFSLDPQYLV 271
Query: 344 EKPLHEFHGHSG----EILDLSWSKN-NYLLSASIDKTVRLWR 381
+ EF G+S + L+WS + L + D +R+W+
Sbjct: 272 DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/268 (19%), Positives = 100/268 (37%), Gaps = 36/268 (13%)
Query: 258 FSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEK 317
+ DG Y SA D +RLW V E V H S++ + +DK+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRF-------------VGHKSDVMSVDIDKKA 119
Query: 318 ISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-------YLLS 370
I+ R + KV+ I + L GH+ + + N ++S
Sbjct: 120 SMIISGSRDKT--------IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 371 ASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429
A DK V+ W + F H++ + + +P D S DG++ +W + +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKA 230
Query: 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL--ELDAEICVHSKKKAPCK 487
+ + + V ++ + P+ + G + +++ +L +L E +SK P
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 488 RITGFQFLPQDSSKVMVSCADSQVRILQ 515
+ D + D+ +R+ Q
Sbjct: 290 VSLAWS---ADGQTLFAGYTDNVIRVWQ 314
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 116/282 (41%), Gaps = 63/282 (22%)
Query: 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFN 403
P+ F GHS + D + + + Y LSAS DKT+RLW V + F H + V V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463
+ ISGS D +++W + +G + +++G
Sbjct: 117 K-KASMIISGSRDKTIKVWTI------------------------KGQCLATLLG----- 146
Query: 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIG 521
H + +++ V +KA DS ++ + D V+ L +
Sbjct: 147 -----HNDWVSQVRVVPNEKA-----------DDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 522 KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE----PAHDQAKTIR-SLE 576
+ G + N L+A + DG I SAG+D + +WN + A D+ ++ S
Sbjct: 191 DFIGHNSNINTLTA--SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 577 RFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPA 618
R+ A+ A G+K + +PQ ++ DD PE ++ A
Sbjct: 249 RYWLAAATA---TGIKVFSL--DPQ-YLVDDLRPEFAGYSAA 284
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 93/224 (41%), Gaps = 26/224 (11%)
Query: 167 LMDEIVEKESSA--AGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCSKVQR 224
+M ++K++S +G ++ K W + + LA ++ +VR+ + V
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 225 VKVYHCKK-RSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283
+ + K ++ L+ + H+ +I T+ SPDG +ASAG DG + LW + +
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL 343
+ +T++ E+ L + L + + VF ++
Sbjct: 230 AM--------------YTLSAQDEVFSLAFSPNRY----WLAAATATGIKVFSLDPQYLV 271
Query: 344 EKPLHEFHGHSG----EILDLSWSKN-NYLLSASIDKTVRLWRV 382
+ EF G+S + L+WS + L + D +R+W+V
Sbjct: 272 DDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 76/198 (38%), Gaps = 30/198 (15%)
Query: 258 FSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEK 317
+ DG Y SA D +RLW V E V H S++ + +DK+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRF-------------VGHKSDVMSVDIDKKA 119
Query: 318 ISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-------YLLS 370
I+ R + KV+ I + L GH+ + + N ++S
Sbjct: 120 SMIISGSRDKT--------IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 371 ASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429
A DK V+ W + F H++ + + +P D S DG++ +W + +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKA 230
Query: 430 VDWVDIRQIVTAVCYRPD 447
+ + + V ++ + P+
Sbjct: 231 MYTLSAQDEVFSLAFSPN 248
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 116/282 (41%), Gaps = 63/282 (22%)
Query: 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFN 403
P+ F GHS + D + + + Y LSAS DKT+RLW V + F H + V V +
Sbjct: 51 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 110
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463
+ ISGS D +++W + +G + +++G
Sbjct: 111 K-KASMIISGSRDKTIKVWTI------------------------KGQCLATLLG----- 140
Query: 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIG 521
H + +++ V +KA DS ++ + D V+ L +
Sbjct: 141 -----HNDWVSQVRVVPNEKA-----------DDDSVTIISAGNDKMVKAWNLNQFQIEA 184
Query: 522 KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE----PAHDQAKTIR-SLE 576
+ G + N L+A + DG I SAG+D + +WN + A D+ ++ S
Sbjct: 185 DFIGHNSNINTLTA--SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 242
Query: 577 RFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPA 618
R+ A+ A G+K + +PQ ++ DD PE ++ A
Sbjct: 243 RYWLAAATA---TGIKVFSL--DPQ-YLVDDLRPEFAGYSKA 278
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 93/224 (41%), Gaps = 26/224 (11%)
Query: 167 LMDEIVEKESSA--AGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCSKVQR 224
+M ++K++S +G ++ K W + + LA ++ +VR+ + V
Sbjct: 104 VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 163
Query: 225 VKVYHCKK-RSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283
+ + K ++ L+ + H+ +I T+ SPDG +ASAG DG + LW + +
Sbjct: 164 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 223
Query: 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL 343
+ +T++ E+ L + L + + VF ++
Sbjct: 224 AM--------------YTLSAQDEVFSLAFSPNRY----WLAAATATGIKVFSLDPQYLV 265
Query: 344 EKPLHEFHGHSG----EILDLSWSKN-NYLLSASIDKTVRLWRV 382
+ EF G+S + L+WS + L + D +R+W+V
Sbjct: 266 DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/268 (19%), Positives = 100/268 (37%), Gaps = 36/268 (13%)
Query: 258 FSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEK 317
+ DG Y SA D +RLW V E V H S++ + +DK+
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRF-------------VGHKSDVMSVDIDKKA 113
Query: 318 ISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-------YLLS 370
I+ R + KV+ I + L GH+ + + N ++S
Sbjct: 114 SMIISGSRDKT--------IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 165
Query: 371 ASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429
A DK V+ W + F H++ + + +P D S DG++ +W + +
Sbjct: 166 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKA 224
Query: 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL--ELDAEICVHSKKKAPCK 487
+ + + V ++ + P+ + G + +++ +L +L E +SK P
Sbjct: 225 MYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 283
Query: 488 RITGFQFLPQDSSKVMVSCADSQVRILQ 515
+ D + D+ +R+ Q
Sbjct: 284 VSLAWS---ADGQTLFAGYTDNVIRVWQ 308
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 116/282 (41%), Gaps = 63/282 (22%)
Query: 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFN 403
P+ F GHS + D + + + Y LSAS DKT+RLW V + F H + V V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463
+ ISGS D +++W + +G + +++G
Sbjct: 117 K-KASMIISGSRDKTIKVWTI------------------------KGQCLATLLG----- 146
Query: 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIG 521
H + +++ V +KA DS ++ + D V+ L +
Sbjct: 147 -----HNDWVSQVRVVPNEKA-----------DDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 522 KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE----PAHDQAKTIR-SLE 576
+ G + N L+A + DG I SAG+D + +WN + A D+ ++ S
Sbjct: 191 DFIGHNSNINTLTA--SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 577 RFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPA 618
R+ A+ A G+K + +PQ ++ DD PE ++ A
Sbjct: 249 RYWLAAATA---TGIKVFSL--DPQ-YLVDDLRPEFAGYSKA 284
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 93/224 (41%), Gaps = 26/224 (11%)
Query: 167 LMDEIVEKESSA--AGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCSKVQR 224
+M ++K++S +G ++ K W + + LA ++ +VR+ + V
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 225 VKVYHCKK-RSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283
+ + K ++ L+ + H+ +I T+ SPDG +ASAG DG + LW + +
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL 343
+ +T++ E+ L + L + + VF ++
Sbjct: 230 AM--------------YTLSAQDEVFSLAFSPNRY----WLAAATATGIKVFSLDPQYLV 271
Query: 344 EKPLHEFHGHSG----EILDLSWSKN-NYLLSASIDKTVRLWRV 382
+ EF G+S + L+WS + L + D +R+W+V
Sbjct: 272 DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 52/268 (19%), Positives = 100/268 (37%), Gaps = 36/268 (13%)
Query: 258 FSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEK 317
+ DG Y SA D +RLW V E V H S++ + +DK+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRF-------------VGHKSDVMSVDIDKKA 119
Query: 318 ISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-------YLLS 370
I+ R + KV+ I + L GH+ + + N ++S
Sbjct: 120 SMIISGSRDKT--------IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 371 ASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429
A DK V+ W + F H++ + + +P D S DG++ +W + +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKA 230
Query: 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL--ELDAEICVHSKKKAPCK 487
+ + + V ++ + P+ + G + +++ +L +L E +SK P
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 488 RITGFQFLPQDSSKVMVSCADSQVRILQ 515
+ D + D+ +R+ Q
Sbjct: 290 VSLAWS---ADGQTLFAGYTDNVIRVWQ 314
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 116/282 (41%), Gaps = 63/282 (22%)
Query: 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFN 403
P+ F GHS + D + + + Y LSAS DKT+RLW V + F H + V V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463
+ ISGS D +++W + +G + +++G
Sbjct: 117 K-KASMIISGSRDKTIKVWTI------------------------KGQCLATLLG----- 146
Query: 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIG 521
H + +++ V +KA DS ++ + D V+ L +
Sbjct: 147 -----HNDWVSQVRVVPNEKA-----------DDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 522 KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE----PAHDQAKTIR-SLE 576
+ G + N L+A + DG I SAG+D + +WN + A D+ ++ S
Sbjct: 191 DFIGHNSNINTLTA--SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 577 RFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPA 618
R+ A+ A G+K + +PQ ++ DD PE ++ A
Sbjct: 249 RYWLAAATA---TGIKVFSL--DPQ-YLVDDLRPEFAGYSKA 284
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 93/224 (41%), Gaps = 26/224 (11%)
Query: 167 LMDEIVEKESSA--AGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCSKVQR 224
+M ++K++S +G ++ K W + + LA ++ +VR+ + V
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 225 VKVYHCKK-RSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283
+ + K ++ L+ + H+ +I T+ SPDG +ASAG DG + LW + +
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL 343
+ +T++ E+ L + L + + VF ++
Sbjct: 230 AM--------------YTLSAQDEVFSLAFSPNRY----WLAAATATGIKVFSLDPQYLV 271
Query: 344 EKPLHEFHGHSG----EILDLSWSKN-NYLLSASIDKTVRLWRV 382
+ EF G+S + L+WS + L + D +R+W+V
Sbjct: 272 DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/268 (19%), Positives = 100/268 (37%), Gaps = 36/268 (13%)
Query: 258 FSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEK 317
+ DG Y SA D +RLW V E V H S++ + +DK+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRF-------------VGHKSDVMSVDIDKKA 119
Query: 318 ISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-------YLLS 370
I+ R + KV+ I + L GH+ + + N ++S
Sbjct: 120 SMIISGSRDKT--------IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 371 ASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429
A DK V+ W + F H++ + + +P D S DG++ +W + +
Sbjct: 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKA 230
Query: 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL--ELDAEICVHSKKKAPCK 487
+ + + V ++ + P+ + G + +++ +L +L E +SK P
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 488 RITGFQFLPQDSSKVMVSCADSQVRILQ 515
+ D + D+ +R+ Q
Sbjct: 290 VSLAWS---ADGQTLFAGYTDNVIRVWQ 314
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 350 FHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFN 403
F GH+ ++L +++S +N ++SAS D+T++LW + C H ++V+CV F+
Sbjct: 468 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGEGHRDWVSCVRFS 526
Query: 404 P-VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGGIVGSMMGDCR 461
P +S S D V++W + +C + + V+ V PDG G G
Sbjct: 527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVL 586
Query: 462 FYNVSDNH--LELDAEICVHS 480
+++++ L+A +H+
Sbjct: 587 LWDLAEGKKLYSLEANSVIHA 607
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 24/145 (16%)
Query: 157 YLENTSELLPLMDEIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGER-----VRL 211
++ +T ++L + + ++ +A + +R K W + L + + GEG R VR
Sbjct: 468 FVGHTKDVLSVAFSLDNRQIVSASR-DRTIKLW-NTLGECKYTISEGGEGHRDWVSCVRF 525
Query: 212 N----EEDAMFCSKVQRVKVYH---CKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQY 264
+ + + S + VKV++ CK RS + H G + T+ SPDG
Sbjct: 526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRST----------LAGHTGYVSTVAVSPDGSL 575
Query: 265 LASAGDDGVVRLWQVVEDERLTEVD 289
AS G DGVV LW + E ++L ++
Sbjct: 576 CASGGKDGVVLLWDLAEGKKLYSLE 600
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 28/211 (13%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV---VEDERLTEVDIPEIDPSCIYF 300
+ + H + + S DGQ+ S DG +RLW + V R
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF--------------- 468
Query: 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360
V H ++ + + I+ + R + + I E GH + +
Sbjct: 469 -VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG----EGHRDWVSCV 523
Query: 361 SWSKNNY---LLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSID 416
+S N ++SAS DKTV++W + N H+ YV+ V +P D + SG D
Sbjct: 524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKD 582
Query: 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD 447
G V +W + + ++ ++ A+C+ P+
Sbjct: 583 GVVLLWDLAEGKKLYSLEANSVIHALCFSPN 613
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 40/212 (18%)
Query: 368 LLSASIDKTVRLWRVGNDHCL------RVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421
++SAS DK++ LW++ D R+ HS++V V + D + +SGS DG++R+
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRL 456
Query: 422 WAVLS--------------CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467
W + + V +D RQIV+A R + + +G+C++
Sbjct: 457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK----LWNTLGECKYTISEG 512
Query: 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPNVIGKYKGL 526
D CV +F P +VS + D V++ N +
Sbjct: 513 GEGHRDWVSCV--------------RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558
Query: 527 RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558
+G + + DG S G+D V +W+
Sbjct: 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 487 KRITGFQ------FLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSD 540
+R+TG L D + D ++R+ + + + + + LS F+ D
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 541 GKHIVSAGEDSNVYMWNCIGH 561
+ IVSA D + +WN +G
Sbjct: 484 NRQIVSASRDRTIKLWNTLGE 504
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 116/282 (41%), Gaps = 63/282 (22%)
Query: 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFN 403
P+ F GHS + D + + + Y LSAS DKT+RLW V + F H + V V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463
+ ISGS D +++W + +G + +++G
Sbjct: 117 K-KASXIISGSRDKTIKVWTI------------------------KGQCLATLLG----- 146
Query: 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIG 521
H + +++ V +KA DS ++ + D V+ L +
Sbjct: 147 -----HNDWVSQVRVVPNEKA-----------DDDSVTIISAGNDKXVKAWNLNQFQIEA 190
Query: 522 KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE----PAHDQAKTIR-SLE 576
+ G + N L+A + DG I SAG+D + +WN + A D+ ++ S
Sbjct: 191 DFIGHNSNINTLTA--SPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPN 248
Query: 577 RFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPA 618
R+ A+ A G+K + +PQ ++ DD PE ++ A
Sbjct: 249 RYWLAAATA---TGIKVFSL--DPQ-YLVDDLRPEFAGYSKA 284
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 26/219 (11%)
Query: 172 VEKESSA--AGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCSKVQRVKVYH 229
++K++S +G ++ K W + + LA ++ +VR+ + V + +
Sbjct: 115 IDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 230 CKK-RSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEV 288
K ++ L+ + H+ +I T+ SPDG +ASAG DG + LW + +
Sbjct: 175 DKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKA---- 230
Query: 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLH 348
+T++ E+ L + L + + VF +++
Sbjct: 231 ----------XYTLSAQDEVFSLAFSPNRY----WLAAATATGIKVFSLDPQYLVDDLRP 276
Query: 349 EFHGHSG----EILDLSWSKN-NYLLSASIDKTVRLWRV 382
EF G+S + L+WS + L + D +R+W+V
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/282 (18%), Positives = 103/282 (36%), Gaps = 36/282 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ + H + + DG Y SA D +RLW V E V
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF-------------VG 105
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
H S++ + +DK+ I+ R + KV+ I + L GH+ + +
Sbjct: 106 HKSDVXSVDIDKKASXIISGSRDKT--------IKVWTIKGQCLATLLGHNDWVSQVRVV 157
Query: 364 KNN-------YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSI 415
N ++SA DK V+ W + F H++ + + +P D S
Sbjct: 158 PNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGK 216
Query: 416 DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL--ELD 473
DG++ +W + + + + V ++ + P+ + G + +++ +L +L
Sbjct: 217 DGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLR 275
Query: 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515
E +SK P + D + D+ +R+ Q
Sbjct: 276 PEFAGYSKAAEPHAVSLAWS---ADGQTLFAGYTDNVIRVWQ 314
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 342 ILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400
I +K L + GH G + L ++ L+S S D+TVR+W + C VF H++ V C+
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 401 HFNPVDD-NYFISGSIDGKVRIWAV 424
+ Y ++GS D + +W +
Sbjct: 210 DIVEYKNIKYIVTGSRDNTLHVWKL 234
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 16/168 (9%)
Query: 263 QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322
+Y+ + D + +W++ + E +P+ Y V H E P F+ + +
Sbjct: 218 KYIVTGSRDNTLHVWKLPK-----ESSVPDHGEEHDYPLVFHTPEENPYFVGVLR-GHMA 271
Query: 323 SLRRTSESACVVFPPKVFRIL-------EKPLHEFHGHSGEILDLSWS-KNNYLLSASID 374
S+R S +V L K L+ GH+ I + + +SAS+D
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 331
Query: 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
T+R+W + N + + + V + D + +S + DG +R W
Sbjct: 332 TTIRIWDLENGELM--YTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 377
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 342 ILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400
I +K L + GH G + L ++ L+S S D+TVR+W + C VF H++ V C+
Sbjct: 150 INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209
Query: 401 HFNPVDD-NYFISGSIDGKVRIWAV 424
+ Y ++GS D + +W +
Sbjct: 210 DIVEYKNIKYIVTGSRDNTLHVWKL 234
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 24/172 (13%)
Query: 263 QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322
+Y+ + D + +W++ + E +P+ Y V H E P F + +L+
Sbjct: 218 KYIVTGSRDNTLHVWKLPK-----ESSVPDHGEEHDYPLVFHTPEENPYF-----VGVLR 267
Query: 323 ----SLRRTSESACVVFPPKVFRIL-------EKPLHEFHGHSGEILDLSWS-KNNYLLS 370
S+R S +V L K L+ GH+ I + + +S
Sbjct: 268 GHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCIS 327
Query: 371 ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
AS D T+R+W + N + + V + D + +S + DG +R W
Sbjct: 328 ASXDTTIRIWDLENGEL--XYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 377
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 352 GHSGEILDLSWSKNNYLLSASIDKTVRLW-RVGNDHCLRVFPHSNYVTCVHFNPVDDNYF 410
GH ++ ++NY+++ + DK +R++ + L++ H V + +
Sbjct: 119 GHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY--AHGGIL 176
Query: 411 ISGSIDGKVRIWAV 424
+SGS D VR+W +
Sbjct: 177 VSGSTDRTVRVWDI 190
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 347 LHEFHGHSGEILD---LSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403
++ H+ + D +S+S+N +L +AS DKT++LW+ ND ++ F + H
Sbjct: 135 VYNLQAHNASVWDAKVVSFSENKFL-TASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLA 191
Query: 404 PVDDNYFISGSIDGKVRI 421
VDD +FIS S DG +++
Sbjct: 192 VVDDGHFISCSNDGLIKL 209
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/383 (21%), Positives = 146/383 (38%), Gaps = 55/383 (14%)
Query: 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ--AHDGSILTMKFSPDGQYLA 266
VR N + ++F S + + +++ ++ AH GS+ + +SPDG +A
Sbjct: 196 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255
Query: 267 SAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326
SA D +++W V + E IP V E + L + K ++L
Sbjct: 256 SASADKTIKIWNVATLK--VEKTIP----------VGTRIEDQQLGIIWTK----QALVS 299
Query: 327 TSESACVVF-PPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN 384
S + + F P++ I + +GH+ I LS S + L SA + + W +
Sbjct: 300 ISANGFINFVNPELGSIDQVR----YGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355
Query: 385 DHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAV 442
RVFP H+ +T + D + +S W D ++V A
Sbjct: 356 GISNRVFPDVHATMITGIKTTSKGDLFTVS-------------------WDDHLKVVPAG 396
Query: 443 CYRPDGQGGIVGSMMGDCRFYNVS-DNHLELDA---EICVHSKKK---APCKRITGFQFL 495
D + + VS D + + A I ++S K P + L
Sbjct: 397 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL 456
Query: 496 PQDSSKVMVSCADSQVRI--LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNV 553
D V V DS+V + L G +V + K + S F+++G +V+ + V
Sbjct: 457 SNDKQFVAVGGQDSKVHVYKLSGASV-SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKV 515
Query: 554 YMWNCIGHEEPAHDQAKTIRSLE 576
++ + E AH + T + +
Sbjct: 516 IPYSVANNFELAHTNSWTFHTAK 538
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 226 KVYHCKKRSK---ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282
K+ +C S + +L + H K SP G Y AS G VR+W +
Sbjct: 32 KIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 91
Query: 283 ERLTEVDIP 291
+ + IP
Sbjct: 92 THILKTTIP 100
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 103/239 (43%), Gaps = 30/239 (12%)
Query: 344 EKPLHEFHGHSGEILDLSWSKNNYLLSASIDK-TVRLWRVGN-----DHCLRVFPHSNYV 397
EKP+ S + DL WS NN +++ ++D ++ L+ + R HS+ V
Sbjct: 58 EKPIASLQVDS-KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV 116
Query: 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--------VVDWVDIRQIVTAVCYRPDGQ 449
V FN DN SG +G++ IW + C + + + + +
Sbjct: 117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQS 176
Query: 450 GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC----KRITGFQFLPQDSSKVMVS 505
V + G F ++ D L+ E+ +H +P ++++ ++ P++S++V +
Sbjct: 177 LAHVFASAGSSNFASIWD--LKAKKEV-IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA 233
Query: 506 CA---DSQVRILQGPNVIGKYKGLRRSGNQ---LSACFTSDGKH-IVSAGEDSNVYMWN 557
D + I N + L + G+Q LS + +H ++S+G D+ V +WN
Sbjct: 234 TGSDNDPSILIWDLRNANTPLQTLNQ-GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 89/247 (36%), Gaps = 35/247 (14%)
Query: 193 LRSLACVVDKQGEGERVRLN-EEDAMFCSKVQRVKVY-----HCKKRSKELSALYKGQEI 246
+ S+A + + V+ N ++D + S +++ C + + L GQ +
Sbjct: 103 INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM 162
Query: 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLS 306
+ D I ASAG +W + + V HLS
Sbjct: 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE-----------------VIHLS 205
Query: 307 ELKPLFMDKEKISIL----KSLRRTSESACVVFPPKVF----RILEKPLHEFH-GHSGEI 357
P K+++S++ K+ R + + P + R PL + GH I
Sbjct: 206 YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGI 265
Query: 358 LDLSW--SKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS 414
L L W + LLS+ D TV LW + L FP N+ F P + F S
Sbjct: 266 LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325
Query: 415 IDGKVRI 421
D K+ +
Sbjct: 326 FDNKIEV 332
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 28/184 (15%)
Query: 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLS 306
+ H ++ + +SP G YLASA D +W+ +D D C+ H +
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-----------DFECVTTLEGHEN 106
Query: 307 ELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHE----FHGHSGEILDLSW 362
E+K + ++L + R V+ + E+ +E + H+ ++ + W
Sbjct: 107 EVKSVAWAPSG-NLLATCSRDKSVW-------VWEVDEEDEYECVSVLNSHTQDVKHVVW 158
Query: 363 SKNNYLL-SASIDKTVRLWRVGNDH---CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGK 418
+ LL SAS D TV+L+R D C + H + V + F+P S S D
Sbjct: 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRT 217
Query: 419 VRIW 422
VRIW
Sbjct: 218 VRIW 221
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 27/92 (29%)
Query: 211 LNEEDAMFC-----SKVQRVK--VYHCKKRSKELSA---------LYKGQE--------I 246
++EED C S Q VK V+H S+EL A LY+ +E +
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVWH---PSQELLASASYDDTVKLYREEEDDWVCCATL 190
Query: 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278
+ H+ ++ ++ F P GQ LAS DD VR+W+
Sbjct: 191 EGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 17/190 (8%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
+ +H + + + P + LASA D V+L++ ED+ + + + + +
Sbjct: 146 LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS 205
Query: 306 SELKPLFMDKEKISILKSLRRTSES--ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
+ D + I + +E AC P I L FH + I D++W
Sbjct: 206 GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT--LSGFHSRT--IYDIAWC 261
Query: 364 K-NNYLLSASIDKTVRLWR--VGNDHCLRVF--------PHSNYVTCVHFNPVDDNYFIS 412
+ L +A D +R+++ +D F HS V CV +NP + S
Sbjct: 262 QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321
Query: 413 GSIDGKVRIW 422
S DG+V W
Sbjct: 322 CSDDGEVAFW 331
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 16/137 (11%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
++ H+ + ++ ++P G LA+ D V +W+V E++ V + + V H
Sbjct: 101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365
S+ L +K L R E V GH + L++ +
Sbjct: 161 SQ--ELLASASYDDTVK-LYREEEDDWVC------------CATLEGHESTVWSLAFDPS 205
Query: 366 NY-LLSASIDKTVRLWR 381
L S S D+TVR+WR
Sbjct: 206 GQRLASCSDDRTVRIWR 222
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 60/242 (24%)
Query: 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLW--RVGNDHCLRVFPHSNYVTCVHF 402
P GH+ + DL+ S+ N + +S+S DKT+RLW R G + R H + V V F
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK-RFVGHQSEVYSVAF 126
Query: 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRF 462
+P D+ +S + ++++W +L G+C+F
Sbjct: 127 SP-DNRQILSAGAEREIKLWNIL--------------------------------GECKF 153
Query: 463 YNV-SDNHLELDAEICV-HSKKKAPCKRITGFQFLPQDSS-----KVMVSCADSQVRILQ 515
+ +NH D CV +S ++ F P +S ++ V + Q+R
Sbjct: 154 SSAEKENH--SDWVSCVRYSPIMKSANKVQ--PFAPYFASVGWDGRLKVWNTNFQIRY-- 207
Query: 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAH--DQAKTIR 573
+K + N LS + +GK+I + G+D + +W+ + P D TI
Sbjct: 208 ------TFKAHESNVNHLS--ISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTIN 259
Query: 574 SL 575
+
Sbjct: 260 QI 261
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 25/166 (15%)
Query: 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD-------IPEIDPSCIYF 300
H + ++ FSPD + + SAG + ++LW ++ + + + + + + S I
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175
Query: 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360
+ N + P F L KV+ + + F H + L
Sbjct: 176 SANKVQPFAPYFASVGWDGRL----------------KVWNTNFQIRYTFKAHESNVNHL 219
Query: 361 SWSKN-NYLLSASIDKTVRLWRVGN-DHCLRVFPHSNYVTCVHFNP 404
S S N Y+ + DK + +W + N + R F + + + FNP
Sbjct: 220 SISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP 265
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280
+AH+ ++ + SP+G+Y+A+ G D + +W ++
Sbjct: 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL 243
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 112/317 (35%), Gaps = 82/317 (25%)
Query: 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLF 312
I ++ + +G YLA V+LW V + +RL + +H + + L
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-------------TSHSARVGSLS 196
Query: 313 MDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA 371
+ IL S R+ R+ E + GHS E+ L W+ + +L S
Sbjct: 197 WNSY---ILSSGSRSGH-----IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 248
Query: 372 SIDKTVRLWRV----GNDHCLRVFP-HSNYVTCVHFNPVDDNYFISG--SIDGKVRIWAV 424
D V +W G L+ F H V V + P N +G + D +RIW V
Sbjct: 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
Query: 425 LSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484
S + VD V ++ + P ++ EL
Sbjct: 309 CSGACLSAVDAHSQVCSILWSP---------------------HYKEL------------ 335
Query: 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--IGKYKGLRRSGNQLSACFTSDGK 542
I+G F A +Q+ I + P + + + KG + LS + DG
Sbjct: 336 ----ISGHGF------------AQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGA 377
Query: 543 HIVSAGEDSNVYMWNCI 559
+ SA D + +W C
Sbjct: 378 TVASAAADETLRLWRCF 394
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 240 LYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281
+ K E++ H +L++ SPDG +ASA D +RLW+ E
Sbjct: 354 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277
+ H + ++++PDG++LAS G+D +V +W
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 112/317 (35%), Gaps = 82/317 (25%)
Query: 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLF 312
I ++ + +G YLA V+LW V + +RL + +H + + L
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-------------TSHSARVGSLS 207
Query: 313 MDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA 371
+ IL S R+ R+ E + GHS E+ L W+ + +L S
Sbjct: 208 WNSY---ILSSGSRSGH-----IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 259
Query: 372 SIDKTVRLWRV----GNDHCLRVFP-HSNYVTCVHFNPVDDNYFISG--SIDGKVRIWAV 424
D V +W G L+ F H V V + P N +G + D +RIW V
Sbjct: 260 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
Query: 425 LSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484
S + VD V ++ + P ++ EL
Sbjct: 320 CSGACLSAVDAHSQVCSILWSP---------------------HYKEL------------ 346
Query: 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--IGKYKGLRRSGNQLSACFTSDGK 542
I+G F A +Q+ I + P + + + KG + LS + DG
Sbjct: 347 ----ISGHGF------------AQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGA 388
Query: 543 HIVSAGEDSNVYMWNCI 559
+ SA D + +W C
Sbjct: 389 TVASAAADETLRLWRCF 405
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 240 LYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281
+ K E++ H +L++ SPDG +ASA D +RLW+ E
Sbjct: 365 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 406
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277
+ H + ++++PDG++LAS G+D +V +W
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 103/283 (36%), Gaps = 50/283 (17%)
Query: 312 FMDKEKISILKSLR-RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLS 370
F+ + + LR R +ES V ++ + ++ + HG LD+ + Y+LS
Sbjct: 4 FLSARQTGLEDPLRLRRAESTRRVLGLELNK--DRDVERIHGGGINTLDIEPVEGRYMLS 61
Query: 371 ASIDKTVRLWRVGNDHCLRVFP--------------HSNYVTCVHFNPVDDNYFISGSID 416
D + L+ + N + H V V + P D F S S D
Sbjct: 62 GGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121
Query: 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG------GIVGSMMGDCRFYNVSDNHL 470
+++W + D + + V + P G G + C + S +H+
Sbjct: 122 KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI 181
Query: 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG------KYK 524
+ + I + P+ + + ADS+V++ G ++
Sbjct: 182 -----------LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230
Query: 525 GLR----------RSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557
G + +G CFTSDG H+++ G D+ + +WN
Sbjct: 231 GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 133/376 (35%), Gaps = 88/376 (23%)
Query: 249 HDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEV----------DIPEIDPSC 297
H G I T+ P +G+Y+ S G DGV+ L+ + R + D P++
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 298 IYFTVNHLSELKPLFMDKEKISILKSL-RRTSESACVV-FPPKVFRILEKPL-------- 347
+ TV +F LK T ++A V F V+ P+
Sbjct: 102 VE-TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVA 160
Query: 348 -------------------HEFHGHSGEILDLSWS-KNNYLL-SASIDKTVRLWRVGN-D 385
H GH EIL +SWS + +Y+L +AS D V+LW V
Sbjct: 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220
Query: 386 HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYR 445
CL N GK + AV S + V +C+
Sbjct: 221 GCLITLDQHN---------------------GK-KSQAVESANTAH----NGKVNGLCFT 254
Query: 446 PDGQGGIVGSMMGDCRFYNVSD--NHLELDAEICVHSKK----KAPCKRITGFQFLPQDS 499
DG + R +N S+ N L ++C +SKK C + F F+P S
Sbjct: 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS 314
Query: 500 S-KVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558
+ V + Q+ +L+ G YK + F S+ + + S D N+ W
Sbjct: 315 TIAVYTVYSGEQITMLK-----GHYKTVD------CCVFQSNFQELYSGSRDCNILAWVP 363
Query: 559 IGHEEPAHDQAKTIRS 574
+E D T +S
Sbjct: 364 SLYEPVPDDDETTTKS 379
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 224 RVKVYHCKKRSKELSAL--YKGQEIQA-------HDGSILTMKFSPDGQYLASAGDDGVV 274
RVK++ ++ S L L + G++ QA H+G + + F+ DG +L + G D +
Sbjct: 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269
Query: 275 RLWQ 278
RLW
Sbjct: 270 RLWN 273
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 353 HSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY-- 409
H+G +LD+ WS + + + +AS DKT ++W + ++ +++ H V +H+ NY
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKA-PNYSC 143
Query: 410 FISGSIDGKVRIW 422
++GS D ++ W
Sbjct: 144 VMTGSWDKTLKFW 156
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 111/317 (35%), Gaps = 82/317 (25%)
Query: 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLF 312
I ++ + +G YLA V+LW V + +RL + +H + + L
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-------------TSHSARVGSLS 116
Query: 313 MDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA 371
+ IL S R+ R+ E + GHS E+ L W+ + +L S
Sbjct: 117 WNSY---ILSSGSRSGH-----IHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 168
Query: 372 SIDKTVRLWRV----GNDHCLRVFP-HSNYVTCVHFNPVDDNYFISG--SIDGKVRIWAV 424
D V +W G L+ F H V V + P N +G + D +RIW V
Sbjct: 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228
Query: 425 LSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484
S + VD V ++ + P H K+
Sbjct: 229 CSGACLSAVDAHSQVCSILWSP--------------------------------HYKE-- 254
Query: 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--IGKYKGLRRSGNQLSACFTSDGK 542
I+G F A +Q+ I + P + + + KG + LS + DG
Sbjct: 255 ---LISGHGF------------AQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGA 297
Query: 543 HIVSAGEDSNVYMWNCI 559
+ SA D + +W C
Sbjct: 298 TVASAAADETLRLWRCF 314
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 240 LYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281
+ K E++ H +L++ SPDG +ASA D +RLW+ E
Sbjct: 274 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/261 (19%), Positives = 97/261 (37%), Gaps = 44/261 (16%)
Query: 156 IYLENTSELLPLMDEIVEKESSAAGKAERVKKRW----FSRLRSLACVVDKQGEGERVRL 211
+ +E E + + I E A G + + W RLR++ + G L
Sbjct: 61 LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS-----L 115
Query: 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD 271
+ + S + ++H R E + + H + ++++PDG++LAS G+D
Sbjct: 116 SWNSYILSSGSRSGHIHHHDVRVAE----HHVATLSGHSQEVCGLRWAPDGRHLASGGND 171
Query: 272 GVVRLWQVVEDE-----------RLTEVDIPEIDP--SCIYFTVNHLSELKPLFMDKEKI 318
+V +W E V P S + T S+ +
Sbjct: 172 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 231
Query: 319 SILKSLRRTSESACVVFPPKVFRILE-----------------KPLHEFHGHSGEILDLS 361
+ L ++ S+ +++ P ++ + E GH+ +L L+
Sbjct: 232 ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 291
Query: 362 WSKNNYLL-SASIDKTVRLWR 381
S + + SA+ D+T+RLWR
Sbjct: 292 MSPDGATVASAAADETLRLWR 312
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/274 (19%), Positives = 101/274 (36%), Gaps = 73/274 (26%)
Query: 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS--KNNYLLSASIDKTVRLWRVGN---- 384
A +V P ++K + GH+ +LD++W +N + S S D TV +W + +
Sbjct: 58 AFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLV 117
Query: 385 ----DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT 440
+ + + H+ V V ++P N +S D + +W V
Sbjct: 118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV---------------- 161
Query: 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500
G G V ++ D D +D +D +
Sbjct: 162 -------GTGAAVLTLGPDVH----PDTIYSVDWS---------------------RDGA 189
Query: 501 KVMVSCADSQVRILQ--GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG----EDSNVY 554
+ SC D +VR+++ V+ + + A F S+GK I++ G + V
Sbjct: 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVA 248
Query: 555 MWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPW 588
+W+ EEP SL+ T++ + +P+
Sbjct: 249 LWDTKHLEEPL--------SLQELDTSSGVLLPF 274
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/253 (19%), Positives = 93/253 (36%), Gaps = 73/253 (28%)
Query: 352 GHSGEILDLSW--SKNNYLLSASIDKTVRLWRVGN--------DHCLRVFPHSNYVTCVH 401
GH+ +LD++W +N + S S D TV +W + + + + + H+ V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCR 461
++P N +S D + +W V G G V ++ D
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDV-----------------------GTGAAVLTLGPDVH 175
Query: 462 FYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ--GPNV 519
D +D +D + + SC D +VR+++ V
Sbjct: 176 ----PDTIYSVDWS---------------------RDGALICTSCRDKRVRVIEPRKGTV 210
Query: 520 IGKYKGLRRSGNQLSACFTSDGKHIVSAG----EDSNVYMWNCIGHEEPAHDQAKTIRSL 575
+ + + A F S+GK I++ G + V +W+ EEP SL
Sbjct: 211 VAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPL--------SL 261
Query: 576 ERFTTNASIAIPW 588
+ T++ + +P+
Sbjct: 262 QELDTSSGVLLPF 274
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 343 LEKPLHEFHGHSGEILDLSW--SKNNYLLSASIDKTVRLWRVGN 384
L +P+ GH+ + ++W + N LLSA D + +W VG
Sbjct: 120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT 163
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
N ++S S+D T+ + +G+D L+ H+ +T + NP+ ISGS DG++ W+
Sbjct: 309 NGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIMEWS 363
Query: 424 VLSCH 428
S H
Sbjct: 364 SSSMH 368
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 337 PKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASI--DKTVRLWRVGNDHCLR----V 390
PK R+++ + F GH+ + D++W + L S+ D+ + +W N++ + V
Sbjct: 217 PKEHRVIDAK-NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 275
Query: 391 FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
H+ V C+ FNP + +GS D V +W
Sbjct: 276 DAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 345 KPLHEFHGHSGEILDLSWSKN--NYLLSASIDKTVRLWRVG---NDHCL----RVFP-HS 394
+P GH E LSW+ N YLLSAS D T+ LW + +H + +F H+
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 233
Query: 395 NYVTCVHFNPVDDNYFISGSIDGKVRIW 422
V V ++ + ++ F S + D K+ IW
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIW 261
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 14/182 (7%)
Query: 246 IQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNH 304
++ H + ++P+ YL SA DD + LW + + V ID I+ H
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV----IDAKNIF--TGH 232
Query: 305 LSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364
+ ++ + S+ S+ + +++ + KP H H+ E+ LS++
Sbjct: 233 TAVVEDVAWHLLHESLFGSV--ADDQKLMIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNP 289
Query: 365 NN--YLLSASIDKTVRLWRVGNDHC-LRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVR 420
+ L + S DKTV LW + N L F H + + V ++P ++ S D ++
Sbjct: 290 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 349
Query: 421 IW 422
+W
Sbjct: 350 VW 351
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 340 FRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLW---RVGNDHCLR----- 389
R L+ LH F H EI + WS +N L S+ D+ + +W ++G +
Sbjct: 309 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 368
Query: 390 ----VFPHSNYVTCV---HFNPVDDNYFISGSIDGKVRIWAV 424
+F H + + +NP + S S D +++W +
Sbjct: 369 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 337 PKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASI--DKTVRLWRVGNDHCLR----V 390
PK R+++ + F GH+ + D++W + L S+ D+ + +W N++ + V
Sbjct: 215 PKEHRVIDAK-NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273
Query: 391 FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
H+ V C+ FNP + +GS D V +W
Sbjct: 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 345 KPLHEFHGHSGEILDLSWSKN--NYLLSASIDKTVRLWRVG---NDHCL----RVFP-HS 394
+P GH E LSW+ N YLLSAS D T+ LW + +H + +F H+
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231
Query: 395 NYVTCVHFNPVDDNYFISGSIDGKVRIW 422
V V ++ + ++ F S + D K+ IW
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIW 259
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 14/182 (7%)
Query: 246 IQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNH 304
++ H + ++P+ YL SA DD + LW + + V ID I+ H
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV----IDAKNIF--TGH 230
Query: 305 LSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364
+ ++ + S+ S+ + +++ + KP H H+ E+ LS++
Sbjct: 231 TAVVEDVAWHLLHESLFGSV--ADDQKLMIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNP 287
Query: 365 NN--YLLSASIDKTVRLWRVGNDHC-LRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVR 420
+ L + S DKTV LW + N L F H + + V ++P ++ S D ++
Sbjct: 288 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 347
Query: 421 IW 422
+W
Sbjct: 348 VW 349
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 340 FRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLW---RVGNDHCLR----- 389
R L+ LH F H EI + WS +N L S+ D+ + +W ++G +
Sbjct: 307 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 366
Query: 390 ----VFPHSNYVTCV---HFNPVDDNYFISGSIDGKVRIWAV 424
+F H + + +NP + S S D +++W +
Sbjct: 367 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 337 PKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASI--DKTVRLWRVGNDHCLR----V 390
PK R+++ + F GH+ + D++W + L S+ D+ + +W N++ + V
Sbjct: 219 PKEHRVIDAK-NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 277
Query: 391 FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
H+ V C+ FNP + +GS D V +W
Sbjct: 278 DAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 345 KPLHEFHGHSGEILDLSWSKN--NYLLSASIDKTVRLWRVG---NDHCL----RVFP-HS 394
+P GH E LSW+ N YLLSAS D T+ LW + +H + +F H+
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 395 NYVTCVHFNPVDDNYFISGSIDGKVRIW 422
V V ++ + ++ F S + D K+ IW
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIW 263
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 14/182 (7%)
Query: 246 IQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNH 304
++ H + ++P+ YL SA DD + LW + + V ID I+ H
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV----IDAKNIF--TGH 234
Query: 305 LSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364
+ ++ + S+ S+ + +++ + KP H H+ E+ LS++
Sbjct: 235 TAVVEDVAWHLLHESLFGSV--ADDQKLMIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNP 291
Query: 365 NN--YLLSASIDKTVRLWRVGNDHC-LRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVR 420
+ L + S DKTV LW + N L F H + + V ++P ++ S D ++
Sbjct: 292 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 351
Query: 421 IW 422
+W
Sbjct: 352 VW 353
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 340 FRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLW---RVGNDHCLR----- 389
R L+ LH F H EI + WS +N L S+ D+ + +W ++G +
Sbjct: 311 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 370
Query: 390 ----VFPHSNYVTCV---HFNPVDDNYFISGSIDGKVRIWAV 424
+F H + + +NP + S S D +++W +
Sbjct: 371 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
N ++S S+D T+ + +G+D L+ H+ +T + NP+ ISGS DG++ W+
Sbjct: 309 NGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIXEWS 363
Query: 424 VLSCH 428
S H
Sbjct: 364 SSSXH 368
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 99/264 (37%), Gaps = 73/264 (27%)
Query: 356 EILDLSWSKNNYLL---------------SASIDKTVRLWRVGNDHCLRVF---PHSNYV 397
E LDL WS + L S+S+D +RLW + N ++ P +
Sbjct: 68 ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT 127
Query: 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-QIVTAVCYRPDGQGGIVGSM 456
F+P D Y +G+ GKV I+ V S +D R + + ++ Y PDG+ G++
Sbjct: 128 LA--FSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI 184
Query: 457 MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--L 514
G ++++ L E P + +T F P DS ++ + D ++I +
Sbjct: 185 DGIINIFDIATGKLLHTLE-----GHAMPIRSLT---FSP-DSQLLVTASDDGYIKIYDV 235
Query: 515 QGPNVIGKYKGLRRSGNQLSAC-------------------------------------- 536
Q N+ G G ++ C
Sbjct: 236 QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWG 295
Query: 537 --FTSDGKHIVSAGEDSNVYMWNC 558
+ +G IVS G+D +++++C
Sbjct: 296 VKYNGNGSKIVSVGDDQEIHIYDC 319
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279
+ V +V ++ + KE S +G+ IL++ +SPDG+YLAS DG++ ++ +
Sbjct: 141 THVGKVNIFGVESGKKEYSLDTRGK-------FILSIAYSPDGKYLASGAIDGIINIFDI 193
Query: 280 VEDERL 285
+ L
Sbjct: 194 ATGKLL 199
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 30/243 (12%)
Query: 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYL 265
G + N E + S VKV+ + +L +G ++ ++++ S
Sbjct: 41 GTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQL-----GVVSVDISHTLPIA 95
Query: 266 ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYF--------TVNHLSELKPLFMDKEK 317
AS+ D +RLW + +++ +D +D + F T H+ ++ ++ K
Sbjct: 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 155
Query: 318 ------------ISILKSLR-RTSESACVVFPPKVFRILE-KPLHEFHGHSGEILDLSWS 363
+SI S + S + +F I K LH GH+ I L++S
Sbjct: 156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS 215
Query: 364 KNNYLL-SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRI 421
++ LL +AS D ++++ V + + H+++V V F P DD +F+S S D V++
Sbjct: 216 PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKV 274
Query: 422 WAV 424
W V
Sbjct: 275 WDV 277
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 88/227 (38%), Gaps = 33/227 (14%)
Query: 226 KVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285
VY S +SAL + E + ++K+S DG +L+ +G+V ++ V +L
Sbjct: 114 NVYVWNADSGSVSALAETDE----STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL 169
Query: 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345
+ + C+ + + LS S S RI
Sbjct: 170 RTMAGHQARVGCLSWNRHVLS---------------------SGSRSGAIHHHDVRIANH 208
Query: 346 PLHEFHGHSGEILDLSWSKNNY-LLSASIDKTVRLWRVGNDHCLRVFPHSNY---VTCVH 401
+ GHS E+ L+W + L S D V++W + + F +N+ V V
Sbjct: 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS--SIPKFTKTNHNAAVKAVA 266
Query: 402 FNPVDDNYFIS--GSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP 446
+ P N + G++D ++ W + V+ VD VT++ + P
Sbjct: 267 WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP 313
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 238 SALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285
S L K +I AHD +L SPDG+ L++A D ++ W+V + + +
Sbjct: 337 SGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290
AH ++++ F+ G+ L SAG DG +R W V ER+T +++
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNM 331
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 252 SILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIP 291
SI ++KFSP G LA A D G + L++ ER+ + +P
Sbjct: 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP 277
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290
AH ++++ F+ G+ L SAG DG +R W V ER+T +++
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNM 341
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 252 SILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIP 291
SI ++KFSP G LA A D G + L++ ER+ + +P
Sbjct: 245 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP 287
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 350 FHGHSGEILDLSWSKNNYLLSASI--DKTVRLWRVGNDHCLR----VFPHSNYVTCVHFN 403
F GH+ + D+SW + L S+ D+ + +W +++ + V H+ V C+ FN
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 404 PVDDNYFISGSIDGKVRIW 422
P + +GS D V +W
Sbjct: 283 PYSEFILATGSADKTVALW 301
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 345 KPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHC-LRVF-PHSNYVTCV 400
KP H H+ E+ LS++ + L + S DKTV LW + N L F H + + V
Sbjct: 264 KPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 323
Query: 401 HFNPVDDNYFISGSIDGKVRIW 422
++P ++ S D ++ +W
Sbjct: 324 QWSPHNETILASSGTDRRLNVW 345
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 352 GHSGEILDLSWSKN--NYLLSASIDKTVRLWRVGN--------DHCLRVFPHSNYVTCVH 401
GH E LSW+ N +LLSAS D T+ LW + D H+ V V
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 234
Query: 402 FNPVDDNYFISGSIDGKVRIWAVLS 426
++ + ++ F S + D K+ IW S
Sbjct: 235 WHLLHESLFGSVADDQKLMIWDTRS 259
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 340 FRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRV 382
R L+ LH F H EI + WS +N L S+ D+ + +W +
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVDIRQIVTAVCYRPDG 448
H VT V NP D + + S+D V+IW + + + R V A C+ PDG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 449 QGGIVGSMMGDCRFYNVS 466
+ + R Y+ S
Sbjct: 309 ARLLTTDQKSEIRVYSAS 326
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVDIRQIVTAVCYRPDG 448
H VT V NP D + + S+D V+IW + + + R V A C+ PDG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 449 QGGIVGSMMGDCRFYNVS 466
+ + R Y+ S
Sbjct: 309 ARLLTTDQKSEIRVYSAS 326
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVDIRQIVTAVCYRPDG 448
H VT V NP D + + S+D V+IW + + + R V A C+ PDG
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 449 QGGIVGSMMGDCRFYNVS 466
+ + R Y+ S
Sbjct: 310 ARLLTTDQKSEIRVYSAS 327
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 45/235 (19%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKF-SPD-GQYLASAGDDGVVRL 276
CS Q +KV+ K K+ S +AHD SI+ + + SP+ G+ +ASA D V+L
Sbjct: 29 CSSDQHIKVF---KLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85
Query: 277 WQVVEDE---------RLTEVDIPEIDPSCIYFTVNHLS-ELKPL-------FMDKEKIS 319
W+ D+ +L ++ + + F HL +L L D + S
Sbjct: 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 145
Query: 320 ILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNY---LLSASIDKT 376
L+S TSE + PP H LSW + + L+ S +
Sbjct: 146 DLRSWTLTSEXKVLSIPPA-------------NHLQSDFCLSWCPSRFSPEKLAVSALEQ 192
Query: 377 VRLWRVGNDHCLRV---FP-HSNYVTCVHFNPVDDNYF---ISGSIDGKVRIWAV 424
+++ G D L V P H + + + + P ++ +G DG++RI+ +
Sbjct: 193 AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280
H+G + ++ ++ G L+SAGDDG VRLW+
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 47/208 (22%)
Query: 347 LHEFHGHSGEILDLSWSKN-----NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVH 401
L GH+G I WS + Y ++ S D +++LW V N C+ + V V
Sbjct: 67 LGTLDGHTGTI----WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVE 122
Query: 402 FNPVDDNYFISGSID------GKVRIWAV---LSCHVVDWVD---IRQIV--------TA 441
F+P NYF++ +D G + I+ + + H + V I +I+ T
Sbjct: 123 FSPC-GNYFLA-ILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180
Query: 442 VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501
+ G+ I G G Y+VS+N+ +D+ I +H K I+ QF P D +
Sbjct: 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS-IDLHE------KSISDMQFSP-DLTY 232
Query: 502 VMVSCADSQ-----VRILQGPNVIGKYK 524
+ S D+ V LQ V+ KY+
Sbjct: 233 FITSSRDTNSFLVDVSTLQ---VLKKYE 257
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 36/238 (15%)
Query: 208 RVRLNEE-DAMF-CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYL 265
+V+ N+E D +F CSK V++ + L L H G+I ++ +Y
Sbjct: 37 QVKYNKEGDLLFSCSKDSSASVWYSL-NGERLGTL------DGHTGTIWSIDVDCFTKYC 89
Query: 266 ASAGDDGVVRLWQVVEDERLTEVDIP------EIDPSCIYFTVNHLSELKPLFMDKEKIS 319
+ D ++LW V + + P E P YF L+ L + + I+
Sbjct: 90 VTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYF----LAILDNVMKNPGSIN 145
Query: 320 ILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS----WS-KNNYLLSASID 374
I + R ++ ++ ++ E+P+H+ H G LD + WS K Y+++ D
Sbjct: 146 IYEIERDSATH-------ELTKVSEEPIHKIITHEG--LDAATVAGWSTKGKYIIAGHKD 196
Query: 375 KTVRLWRVGND--HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430
+ + V N+ + + H ++ + F+P D YFI+ S D + V + V+
Sbjct: 197 GKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVL 253
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276
+Q H G + T+ SP G AS G+DG +RL
Sbjct: 311 VQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 24/183 (13%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
++ Q H + S DG L + G D VR W + E +L + D + F++
Sbjct: 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-----TSQIFSLG 231
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
+ + L + E ++ +V + + ++ H H +L L ++
Sbjct: 232 YCPTGEWLAVGMESSNV-----------------EVLHVNKPDKYQLHLHESCVLSLKFA 274
Query: 364 K-NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
+ +S D + WR + S+ V + VDD Y ++GS D K ++
Sbjct: 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDIS-VDDKYIVTGSGDKKATVY 333
Query: 423 AVL 425
V+
Sbjct: 334 EVI 336
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Query: 369 LSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427
S D + +W + N +R F H++ +C+ + D +G +D VR W +
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREG 215
Query: 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS--DNHLELDAEICVHSKKKAP 485
+ D + ++ Y P G+ VG + +V+ D + E CV S K A
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY 275
Query: 486 CKR 488
C +
Sbjct: 276 CGK 278
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 224 RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279
V+V H K K ++ H+ +L++KF+ G++ S G D ++ W+
Sbjct: 247 NVEVLHVNKPDK--------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 45/235 (19%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKF-SPD-GQYLASAGDDGVVRL 276
CS Q +KV+ K K+ S +AHD SI+ + + SP+ G+ +ASA D V+L
Sbjct: 27 CSSDQHIKVF---KLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 83
Query: 277 WQVVEDE---------RLTEVDIPEIDPSCIYFTVNHLS-ELKPL-------FMDKEKIS 319
W+ D+ +L ++ + + F HL +L L D + S
Sbjct: 84 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 143
Query: 320 ILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNY---LLSASIDKT 376
L+S TSE + PP H LSW + + L+ S +
Sbjct: 144 DLRSWTLTSEMKVLSIPPA-------------NHLQSDFCLSWCPSRFSPEKLAVSALEQ 190
Query: 377 VRLWRVGNDHCLRV---FP-HSNYVTCVHFNPVDDNYF---ISGSIDGKVRIWAV 424
+++ G D L V P H + + + + P ++ +G DG++RI+ +
Sbjct: 191 AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 245
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280
H+G + ++ ++ G L+SAGDDG VRLW+
Sbjct: 303 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 334
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 25/171 (14%)
Query: 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD----GQYLASAGDDG 272
+ S +++ +Y K K L+ ++ H I ++ ++P Q +A+ DG
Sbjct: 183 LAVSALEQAIIYQRGKDGK----LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 238
Query: 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332
+R++++ E +L+ + E N + MD + +S T E A
Sbjct: 239 RIRIFKITE--KLSPLASEES-----LTNSNMFDNSADVDMDAQG----RSDSNTEEKAE 287
Query: 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL-SASIDKTVRLWRV 382
+ +V + L E H+GE+ +SW+ +L SA D VRLW+
Sbjct: 288 LQSNLQV-----ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 333
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 45/235 (19%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKF-SPD-GQYLASAGDDGVVRL 276
CS Q +KV+ K K+ S +AHD SI+ + + SP+ G+ +ASA D V+L
Sbjct: 29 CSSDQHIKVF---KLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85
Query: 277 WQVVEDE---------RLTEVDIPEIDPSCIYFTVNHLS-ELKPL-------FMDKEKIS 319
W+ D+ +L ++ + + F HL +L L D + S
Sbjct: 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 145
Query: 320 ILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNY---LLSASIDKT 376
L+S TSE + PP H LSW + + L+ S +
Sbjct: 146 DLRSWTLTSEMKVLSIPPA-------------NHLQSDFCLSWCPSRFSPEKLAVSALEQ 192
Query: 377 VRLWRVGNDHCLRV---FP-HSNYVTCVHFNPVDDNYF---ISGSIDGKVRIWAV 424
+++ G D L V P H + + + + P ++ +G DG++RI+ +
Sbjct: 193 AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280
H+G + ++ ++ G L+SAGDDG VRLW+
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 25/173 (14%)
Query: 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD----GQYLASAGD 270
+ + S +++ +Y K K L+ ++ H I ++ ++P Q +A+
Sbjct: 183 EKLAVSALEQAIIYQRGKDGK----LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238
Query: 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330
DG +R++++ E +L+ + E N + MD + +S T E
Sbjct: 239 DGRIRIFKITE--KLSPLASEES-----LTNSNMFDNSADVDMDAQG----RSDSNTEEK 287
Query: 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL-SASIDKTVRLWRV 382
A + +V + L E H+GE+ +SW+ +L SA D VRLW+
Sbjct: 288 AELQSNLQV-----ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 350 FHGHSGEILDLSWSKNNYLLSASI--DKTVRLWRVGNDHCLR----VFPHSNYVTCVHFN 403
F GHS + D++W + L S+ D+ + +W ++ + V H+ V C+ FN
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 404 PVDDNYFISGSIDGKVRIW 422
P + +GS D V +W
Sbjct: 285 PYSEFILATGSADKTVALW 303
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 345 KPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHC-LRVF-PHSNYVTCV 400
KP H H+ E+ LS++ + L + S DKTV LW + N L F H + + V
Sbjct: 266 KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
Query: 401 HFNPVDDNYFISGSIDGKVRIW 422
H++P ++ S D ++ +W
Sbjct: 326 HWSPHNETILASSGTDRRLNVW 347
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 352 GHSGEILDLSWSKN--NYLLSASIDKTVRLWRVGN--------DHCLRVFPHSNYVTCVH 401
GH E LSW+ N +LLSAS D TV LW + D HS V V
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 402 FNPVDDNYFISGSIDGKVRIWAVLS------CHVVD 431
++ + ++ F S + D K+ IW S H+VD
Sbjct: 237 WHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVD 272
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 340 FRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLW---RVGNDHCLR----- 389
R L+ LH F H EI + WS +N L S+ D+ + +W ++G +
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 390 ----VFPHSNYVTCV---HFNPVDDNYFISGSIDGKVRIWAV 424
+F H + + +NP + S S D ++IW +
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 350 FHGHSGEILDLSWSKNNYLLSASI--DKTVRLWRVGNDHCLR----VFPHSNYVTCVHFN 403
F GHS + D++W + L S+ D+ + +W ++ + V H+ V C+ FN
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 404 PVDDNYFISGSIDGKVRIW 422
P + +GS D V +W
Sbjct: 285 PYSEFILATGSADKTVALW 303
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 33/173 (19%)
Query: 264 YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSE-------LKPLF---M 313
+L SA DD V LW + + ++ +D I+ + + E + LF
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKI----VDAKAIFTGHSAVVEDVAWHLLHESLFGSVA 249
Query: 314 DKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371
D +K+ I + T+ KP H H+ E+ LS++ + L +
Sbjct: 250 DDQKLXIWDTRSNTTS---------------KPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 372 SIDKTVRLWRVGNDHC-LRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
S DKTV LW + N L F H + + VH++P ++ S D ++ +W
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 352 GHSGEILDLSWSKN--NYLLSASIDKTVRLWRVGN--------DHCLRVFPHSNYVTCVH 401
GH E LSW+ N +LLSAS D TV LW + D HS V V
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 402 FNPVDDNYFISGSIDGKVRIWAVLS------CHVVD 431
++ + ++ F S + D K+ IW S H+VD
Sbjct: 237 WHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVD 272
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 368 LLSASIDKTVRLWRVGN----DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+ ++S+D TV+LW + N + + PH V +FNP D ++ ++R+++
Sbjct: 219 MATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS 278
Query: 424 VLSCHVVDWVDIRQIV 439
DW QI+
Sbjct: 279 SY-----DWSKPDQII 289
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 368 LLSASIDKTVRLWRVGN----DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+ ++S+D TV+LW + N + + PH V +FNP D ++ ++R+++
Sbjct: 220 MATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS 279
Query: 424 VLSCHVVDWVDIRQIV 439
DW QI+
Sbjct: 280 SY-----DWSKPDQII 290
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRI 421
S +S S D +++W + L + H+ VTCV +P D+ F+S S D ++ +
Sbjct: 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL 196
Query: 422 W 422
W
Sbjct: 197 W 197
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 15/157 (9%)
Query: 322 KSLRRTSESACVVFPPKVFRILEKP---LHEF--HGHSGEILDLS-WSKNNYLLSASIDK 375
K + S+S V +++ ILEK +++F + H + LS +S +S D
Sbjct: 106 KGILVASDSGAV----ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF 161
Query: 376 TVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS---CHVVD 431
+V++W + L+ + HS+ V CV P D F+S DG++ +W +D
Sbjct: 162 SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID 221
Query: 432 WVDIRQIVTAVCYRPDGQGGIV-GSMMGDCRFYNVSD 467
+ I T+V + P+ G G+ N+ +
Sbjct: 222 FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 353 HSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF 410
HS I L++S ++ +L S S D TV + R H ++VT V ++P+D + F
Sbjct: 268 HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKF 327
Query: 411 ISGSIDGKV 419
+ D KV
Sbjct: 328 TTVGWDHKV 336
>pdb|1ELJ|A Chain A, The Crystal Structure Of Liganded Maltodextrin-Binding
Protein From Pyrococcus Furiosus
Length = 381
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 293 IDPSCIYFTVNHLSELKPLFMDKEKI-SILKSLRRTSESACVVF-------PPKVFRILE 344
++P Y T + L+E P+ D + +L +E+ +++ PPK F ++
Sbjct: 79 LEPIDEYVTEDLLNEFAPMAQDAMQYKGHYYALPFAAETVAIIYNKEMVSEPPKTFDEMK 138
Query: 345 KPLHEFHGHSGEILDLSWSKNNYLLSA 371
+ +++ + E ++W N Y +SA
Sbjct: 139 AIMEKYYDPANEKYGIAWPINAYFISA 165
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE--------DERLTEVDIPEID 294
QAH I +KF P G+ L S+ D +++W V + R T DI ID
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 352 GHSGEILDLSW-SKNNYLLSASIDKTVRLWRVGNDHCLRVF-----PHSNYVTCVHFNPV 405
GH + D++ + +LSAS+D T+RLW G + F PH + F
Sbjct: 179 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGT 238
Query: 406 D-------------------DNYFISGSIDGKVRIWAVLS 426
D Y I+G + G + + V S
Sbjct: 239 DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS 278
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE--------DERLTEVDIPEID 294
QAH I +KF P G+ L S+ D +++W V + R T DI ID
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 188
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 352 GHSGEILDLSW-SKNNYLLSASIDKTVRLWRVGNDHCLRVF-----PHSNYVTCVHFNPV 405
GH + D++ + +LSAS+D T+RLW G + F PH + F
Sbjct: 176 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGT 235
Query: 406 D-------------------DNYFISGSIDGKVRIWAVLS 426
D Y I+G + G + + V S
Sbjct: 236 DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS 275
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 18/144 (12%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
I+ H+ + + +S DG YLA+ D V +W+ DE E + CI H
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET--DESGEEYE-------CISVLQEHS 153
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365
++K + ++L +S V K + + + +GH G + + K
Sbjct: 154 QDVKHVIWHPS-----EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT 208
Query: 366 N---YLLSASIDKTVRLWR-VGND 385
L S S D TVR+W+ +G+D
Sbjct: 209 EGVFRLCSGSDDSTVRVWKYMGDD 232
>pdb|1VL1|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase (Tm1154)
From Thermotoga Maritima At 1.70a Resolution
Length = 232
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 18/125 (14%)
Query: 101 EEEFRSIRSVRSGRS---NDNVELPEENFPCKDG--NYDREMACDVDQ-------MGPDG 148
+ FR+I V R+ + NV + + P + Y+RE+ DQ MGPDG
Sbjct: 90 QSNFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIRSATDQFDLAILGMGPDG 149
Query: 149 QISNCREIYLENTSELLPLMDEIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGER 208
+++ ++ N L+ D S K RV + + SL + +G+ +
Sbjct: 150 HVASIFDLETGNKDNLVTFTD------PSGDPKVPRVTLTFRALNTSLYVLFLIRGKEKI 203
Query: 209 VRLNE 213
RL E
Sbjct: 204 NRLTE 208
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 342 ILEKPLHEFHGHSGEILDLSWSKN--NYLLSASIDKTVRLWRVGNDHCLRVF----PHSN 395
I + + + GH I +L + N LLS S D +RLW + D + +F H +
Sbjct: 139 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 198
Query: 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
V ++ + + +S +D +++W + S
Sbjct: 199 EVLSADYDLLGEK-IMSCGMDHSLKLWRINS 228
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 342 ILEKPLHEFHGHSGEILDLSWSKN--NYLLSASIDKTVRLWRVGNDHCLRVF----PHSN 395
I + + + GH I +L + N LLS S D +RLW + D + +F H +
Sbjct: 103 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 162
Query: 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
V ++ + + +S +D +++W + S
Sbjct: 163 EVLSADYDLLGEK-IMSCGMDHSLKLWRINS 192
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 342 ILEKPLHEFHGHSGEILDLSWSKN--NYLLSASIDKTVRLWRVGNDHCLRVF----PHSN 395
I + + + GH I +L + N LLS S D +RLW + D + +F H +
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 161
Query: 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
V ++ + + +S +D +++W + S
Sbjct: 162 EVLSADYDLLGEK-IMSCGMDHSLKLWRINS 191
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 342 ILEKPLHEFHGHSGEILDLSWSKN--NYLLSASIDKTVRLWRVGNDHCLRVF----PHSN 395
I + + + GH I +L + N LLS S D +RLW + D + +F H +
Sbjct: 98 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 157
Query: 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
V ++ + + +S +D +++W + S
Sbjct: 158 EVLSADYDLLGEK-IMSCGMDHSLKLWRINS 187
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 342 ILEKPLHEFHGHSGEILDLSWSKN--NYLLSASIDKTVRLWRVGNDHCLRVF----PHSN 395
I + + + GH I +L + N LLS S D +RLW + D + +F H +
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 161
Query: 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
V ++ + + +S +D +++W + S
Sbjct: 162 EVLSADYDLLGEK-IMSCGMDHSLKLWRINS 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,893,904
Number of Sequences: 62578
Number of extensions: 939355
Number of successful extensions: 2656
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1701
Number of HSP's gapped (non-prelim): 555
length of query: 701
length of database: 14,973,337
effective HSP length: 106
effective length of query: 595
effective length of database: 8,340,069
effective search space: 4962341055
effective search space used: 4962341055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)