Query 005352
Match_columns 701
No_of_seqs 847 out of 5205
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 22:06:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0283 WD40 repeat-containing 100.0 1.2E-74 2.7E-79 611.9 47.2 649 6-701 6-712 (712)
2 KOG0271 Notchless-like WD40 re 100.0 1E-44 2.3E-49 349.7 26.1 351 220-693 85-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 4.5E-41 9.7E-46 324.6 25.5 322 200-639 112-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 7.5E-40 1.6E-44 320.5 23.0 278 202-557 176-458 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 6.6E-39 1.4E-43 313.9 21.8 242 248-561 173-420 (459)
6 KOG0306 WD40-repeat-containing 100.0 2.1E-36 4.5E-41 314.9 36.8 294 348-696 367-665 (888)
7 KOG0286 G-protein beta subunit 100.0 1.3E-36 2.9E-41 284.6 29.4 291 244-557 49-343 (343)
8 KOG0319 WD40-repeat-containing 100.0 3E-36 6.5E-41 313.8 28.3 410 207-694 68-618 (775)
9 KOG0315 G-protein beta subunit 100.0 1.5E-35 3.3E-40 271.4 26.7 278 215-564 12-293 (311)
10 KOG0279 G protein beta subunit 100.0 5.4E-34 1.2E-38 265.7 30.6 250 244-562 9-265 (315)
11 KOG0279 G protein beta subunit 100.0 3.5E-34 7.6E-39 267.0 28.4 284 201-559 13-313 (315)
12 KOG0318 WD40 repeat stress pro 100.0 1.8E-33 3.8E-38 282.6 34.1 412 203-694 61-601 (603)
13 KOG0286 G-protein beta subunit 100.0 6.1E-34 1.3E-38 266.8 25.5 289 345-693 46-343 (343)
14 KOG0291 WD40-repeat-containing 100.0 6.7E-32 1.5E-36 281.5 36.6 406 201-693 94-548 (893)
15 KOG0282 mRNA splicing factor [ 100.0 3.2E-34 7E-39 285.8 17.3 289 243-639 207-503 (503)
16 KOG0318 WD40 repeat stress pro 100.0 3.2E-31 6.9E-36 266.4 37.2 423 222-694 38-559 (603)
17 KOG0265 U5 snRNP-specific prot 100.0 1.1E-32 2.3E-37 259.5 22.9 283 244-636 41-333 (338)
18 KOG0284 Polyadenylation factor 100.0 1.1E-33 2.4E-38 276.0 16.2 276 207-561 102-382 (464)
19 KOG0265 U5 snRNP-specific prot 100.0 3.1E-32 6.7E-37 256.4 25.3 287 201-557 45-336 (338)
20 KOG0293 WD40 repeat-containing 100.0 1.1E-32 2.4E-37 269.0 22.5 252 241-562 215-473 (519)
21 KOG0291 WD40-repeat-containing 100.0 6E-31 1.3E-35 274.5 36.5 427 202-694 144-611 (893)
22 KOG0285 Pleiotropic regulator 100.0 4.8E-32 1E-36 260.1 22.9 294 244-643 145-441 (460)
23 KOG0263 Transcription initiati 100.0 6.9E-32 1.5E-36 284.7 26.0 240 209-520 386-652 (707)
24 KOG0273 Beta-transducin family 100.0 4.1E-31 9E-36 262.5 26.5 289 201-562 176-485 (524)
25 KOG0296 Angio-associated migra 100.0 7.1E-31 1.5E-35 253.4 26.6 324 245-693 59-396 (399)
26 KOG0295 WD40 repeat-containing 100.0 1.8E-31 3.9E-36 257.3 22.5 298 183-558 88-405 (406)
27 KOG0315 G-protein beta subunit 100.0 1E-30 2.2E-35 239.8 25.4 280 263-652 11-299 (311)
28 KOG0319 WD40-repeat-containing 100.0 3.9E-30 8.4E-35 268.4 30.8 444 207-694 25-534 (775)
29 KOG0281 Beta-TrCP (transducin 100.0 1.6E-31 3.4E-36 255.4 17.8 272 202-563 196-481 (499)
30 KOG0645 WD40 repeat protein [G 100.0 1.3E-29 2.8E-34 235.6 29.9 265 215-559 29-311 (312)
31 KOG0266 WD40 repeat-containing 100.0 4.8E-30 1E-34 278.7 29.9 280 207-559 165-454 (456)
32 KOG0295 WD40 repeat-containing 100.0 1.1E-30 2.4E-35 251.8 21.6 248 244-562 102-367 (406)
33 KOG0263 Transcription initiati 100.0 1.7E-30 3.6E-35 274.3 23.4 271 250-562 378-652 (707)
34 KOG0316 Conserved WD40 repeat- 100.0 7.7E-30 1.7E-34 232.1 23.9 243 244-562 11-260 (307)
35 KOG0284 Polyadenylation factor 100.0 4.7E-31 1E-35 257.7 16.7 283 249-642 95-381 (464)
36 KOG0266 WD40 repeat-containing 100.0 4.3E-29 9.3E-34 271.3 33.0 248 249-562 158-412 (456)
37 KOG0285 Pleiotropic regulator 100.0 4.3E-30 9.2E-35 246.8 22.0 280 201-561 149-441 (460)
38 KOG0276 Vesicle coat complex C 100.0 3.2E-29 6.9E-34 256.4 29.1 385 207-696 19-418 (794)
39 cd00200 WD40 WD40 domain, foun 100.0 1.2E-28 2.7E-33 251.4 33.8 284 244-639 3-289 (289)
40 PLN00181 protein SPA1-RELATED; 100.0 6.8E-29 1.5E-33 289.8 34.8 326 222-640 457-792 (793)
41 KOG0645 WD40 repeat protein [G 100.0 1.5E-28 3.2E-33 228.6 29.7 292 346-694 6-310 (312)
42 KOG0293 WD40 repeat-containing 100.0 5.2E-30 1.1E-34 250.4 21.0 288 201-561 222-515 (519)
43 KOG0282 mRNA splicing factor [ 100.0 6E-31 1.3E-35 262.5 14.7 295 343-693 203-503 (503)
44 KOG0313 Microtubule binding pr 100.0 1.7E-29 3.7E-34 244.8 24.1 285 201-559 103-418 (423)
45 KOG0273 Beta-transducin family 100.0 1E-28 2.2E-33 245.5 29.2 275 204-559 236-523 (524)
46 cd00200 WD40 WD40 domain, foun 100.0 5.9E-28 1.3E-32 246.4 35.2 278 201-557 7-289 (289)
47 PLN00181 protein SPA1-RELATED; 100.0 6.9E-28 1.5E-32 281.3 36.2 290 202-558 482-792 (793)
48 KOG0276 Vesicle coat complex C 100.0 3.8E-28 8.2E-33 248.6 29.1 274 245-589 8-289 (794)
49 KOG0292 Vesicle coat complex C 100.0 2.4E-28 5.1E-33 258.6 28.1 278 207-562 15-324 (1202)
50 KOG0306 WD40-repeat-containing 100.0 1.2E-27 2.5E-32 249.9 32.4 424 214-693 34-620 (888)
51 KOG0296 Angio-associated migra 100.0 1.4E-27 3E-32 230.7 29.7 319 201-559 62-398 (399)
52 KOG0275 Conserved WD40 repeat- 100.0 3.3E-29 7.1E-34 237.4 16.9 255 248-563 211-471 (508)
53 KOG0643 Translation initiation 100.0 9E-28 1.9E-32 222.7 25.5 233 245-549 5-251 (327)
54 KOG0288 WD40 repeat protein Ti 100.0 1.1E-28 2.3E-33 241.7 18.6 281 202-557 174-459 (459)
55 KOG0275 Conserved WD40 repeat- 100.0 8.4E-29 1.8E-33 234.6 16.8 285 203-557 215-507 (508)
56 KOG0316 Conserved WD40 repeat- 100.0 9.4E-28 2E-32 218.6 22.3 276 201-557 15-297 (307)
57 KOG1407 WD40 repeat protein [F 100.0 2.7E-27 5.8E-32 219.0 23.5 267 244-591 14-283 (313)
58 KOG0281 Beta-TrCP (transducin 100.0 1.4E-28 3.1E-33 235.2 15.0 233 249-564 196-433 (499)
59 KOG0277 Peroxisomal targeting 100.0 2.4E-27 5.2E-32 218.4 19.6 265 221-558 36-308 (311)
60 KOG0310 Conserved WD40 repeat- 100.0 2.3E-26 5.1E-31 230.3 26.1 283 202-563 25-313 (487)
61 KOG0278 Serine/threonine kinas 100.0 1.2E-27 2.6E-32 219.6 15.5 245 244-563 8-258 (334)
62 KOG0292 Vesicle coat complex C 100.0 3.3E-27 7.2E-32 250.0 21.0 250 249-562 8-283 (1202)
63 KOG0299 U3 snoRNP-associated p 100.0 2.3E-26 5E-31 228.5 25.3 281 202-547 141-443 (479)
64 KOG0313 Microtubule binding pr 99.9 2.7E-26 5.8E-31 222.8 23.8 237 249-562 104-379 (423)
65 KOG0772 Uncharacterized conser 99.9 1.5E-26 3.2E-31 232.2 21.5 293 207-558 173-486 (641)
66 KOG0640 mRNA cleavage stimulat 99.9 2.1E-26 4.5E-31 217.5 21.1 295 347-693 105-424 (430)
67 KOG0973 Histone transcription 99.9 6.3E-26 1.4E-30 247.7 27.6 303 207-562 19-358 (942)
68 KOG0647 mRNA export protein (c 99.9 1.7E-25 3.7E-30 211.2 26.5 271 205-547 29-311 (347)
69 KOG0294 WD40 repeat-containing 99.9 1.4E-25 3.1E-30 212.9 26.1 269 217-562 5-284 (362)
70 KOG0278 Serine/threonine kinas 99.9 3.9E-27 8.5E-32 216.2 14.3 280 201-562 12-300 (334)
71 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-24 2.8E-29 207.4 31.8 292 243-562 7-306 (311)
72 PTZ00421 coronin; Provisional 99.9 5.4E-25 1.2E-29 238.2 32.9 251 245-560 70-332 (493)
73 KOG0268 Sof1-like rRNA process 99.9 1.9E-26 4.1E-31 222.3 18.7 284 196-562 59-348 (433)
74 KOG0288 WD40 repeat protein Ti 99.9 4.1E-27 8.9E-32 230.6 13.7 245 245-562 170-420 (459)
75 KOG0274 Cdc4 and related F-box 99.9 2.1E-25 4.6E-30 241.4 27.9 275 203-563 208-486 (537)
76 KOG0643 Translation initiation 99.9 3.3E-25 7.2E-30 205.7 24.8 279 201-560 8-318 (327)
77 KOG0640 mRNA cleavage stimulat 99.9 3E-26 6.6E-31 216.4 18.1 309 241-641 103-426 (430)
78 PTZ00420 coronin; Provisional 99.9 1.4E-24 3.1E-29 235.7 33.6 254 219-541 50-318 (568)
79 KOG0305 Anaphase promoting com 99.9 2.9E-25 6.4E-30 231.4 26.8 273 210-562 184-464 (484)
80 KOG0641 WD40 repeat protein [G 99.9 9E-24 2E-28 191.2 30.1 285 207-559 38-349 (350)
81 PTZ00421 coronin; Provisional 99.9 4.9E-24 1.1E-28 230.8 33.8 256 249-562 19-293 (493)
82 KOG0264 Nucleosome remodeling 99.9 8.6E-26 1.9E-30 224.8 17.9 265 199-518 120-405 (422)
83 KOG0772 Uncharacterized conser 99.9 1.8E-25 3.8E-30 224.5 19.5 255 245-562 162-448 (641)
84 KOG0289 mRNA splicing factor [ 99.9 2E-24 4.4E-29 212.9 26.5 275 206-558 222-505 (506)
85 KOG1407 WD40 repeat protein [F 99.9 5.3E-25 1.1E-29 203.8 20.2 276 348-686 14-293 (313)
86 KOG2055 WD40 repeat protein [G 99.9 7.3E-25 1.6E-29 217.8 22.2 381 157-559 116-512 (514)
87 KOG0647 mRNA export protein (c 99.9 3E-24 6.4E-29 202.9 24.8 244 249-562 26-284 (347)
88 KOG0268 Sof1-like rRNA process 99.9 8.1E-26 1.8E-30 218.0 14.6 287 245-647 61-351 (433)
89 KOG0973 Histone transcription 99.9 1.5E-24 3.3E-29 236.9 24.1 300 248-641 11-355 (942)
90 KOG1036 Mitotic spindle checkp 99.9 8.2E-24 1.8E-28 200.9 25.4 241 249-562 12-265 (323)
91 KOG1036 Mitotic spindle checkp 99.9 1.2E-23 2.6E-28 199.8 25.7 266 208-549 20-294 (323)
92 PTZ00420 coronin; Provisional 99.9 3.4E-23 7.4E-28 225.0 33.1 207 346-562 66-296 (568)
93 KOG1539 WD repeat protein [Gen 99.9 5.8E-24 1.3E-28 225.1 26.1 394 214-695 173-648 (910)
94 KOG0277 Peroxisomal targeting 99.9 5.3E-25 1.2E-29 203.0 15.9 229 213-516 73-308 (311)
95 KOG2096 WD40 repeat protein [G 99.9 1.3E-23 2.7E-28 199.6 24.9 305 241-557 77-400 (420)
96 KOG0308 Conserved WD40 repeat- 99.9 2.1E-24 4.5E-29 222.6 20.6 249 249-563 20-289 (735)
97 KOG0264 Nucleosome remodeling 99.9 4.5E-24 9.7E-29 212.6 21.6 254 248-560 122-405 (422)
98 KOG0300 WD40 repeat-containing 99.9 3.7E-24 8E-29 202.8 19.9 295 243-643 141-478 (481)
99 KOG0274 Cdc4 and related F-box 99.9 1.5E-23 3.3E-28 227.1 26.6 280 249-649 207-490 (537)
100 KOG1063 RNA polymerase II elon 99.9 1.4E-23 3.1E-28 218.0 24.5 392 217-698 163-651 (764)
101 KOG2106 Uncharacterized conser 99.9 1.6E-22 3.5E-27 202.9 31.2 376 207-694 206-625 (626)
102 KOG0310 Conserved WD40 repeat- 99.9 1.9E-23 4.1E-28 209.5 24.6 228 207-515 74-307 (487)
103 KOG0299 U3 snoRNP-associated p 99.9 2.3E-23 5E-28 207.3 23.5 328 171-562 64-413 (479)
104 KOG0283 WD40 repeat-containing 99.9 1.3E-23 2.9E-28 224.2 22.3 245 201-517 265-576 (712)
105 KOG0639 Transducin-like enhanc 99.9 7.8E-24 1.7E-28 211.8 19.0 282 203-558 419-703 (705)
106 KOG1332 Vesicle coat complex C 99.9 9.4E-24 2E-28 193.7 17.3 249 247-560 8-287 (299)
107 KOG0269 WD40 repeat-containing 99.9 4.8E-24 1E-28 224.1 17.5 299 201-565 37-346 (839)
108 KOG0308 Conserved WD40 repeat- 99.9 4.6E-24 9.9E-29 220.1 17.0 280 211-561 35-329 (735)
109 KOG1063 RNA polymerase II elon 99.9 1E-22 2.2E-27 211.7 27.1 323 214-561 207-650 (764)
110 KOG0641 WD40 repeat protein [G 99.9 6.5E-22 1.4E-26 179.2 27.7 263 249-562 31-306 (350)
111 KOG2106 Uncharacterized conser 99.9 1.6E-21 3.5E-26 195.7 32.5 312 206-558 249-625 (626)
112 KOG0289 mRNA splicing factor [ 99.9 1.7E-22 3.7E-27 199.4 25.0 238 250-560 219-463 (506)
113 KOG1408 WD40 repeat protein [F 99.9 1E-22 2.2E-27 211.5 24.3 371 205-693 262-711 (1080)
114 KOG0301 Phospholipase A2-activ 99.9 1.2E-22 2.6E-27 211.4 24.5 273 201-560 12-289 (745)
115 KOG0300 WD40 repeat-containing 99.9 6.8E-23 1.5E-27 194.2 19.7 307 216-562 163-479 (481)
116 KOG1539 WD repeat protein [Gen 99.9 1.1E-21 2.3E-26 208.1 29.9 406 202-693 113-604 (910)
117 KOG0650 WD40 repeat nucleolar 99.9 3.9E-22 8.4E-27 203.9 23.7 302 243-556 393-732 (733)
118 KOG1274 WD40 repeat protein [G 99.9 1.3E-21 2.7E-26 209.9 27.9 252 247-562 10-265 (933)
119 KOG4283 Transcription-coupled 99.9 2.9E-22 6.2E-27 188.5 19.2 231 247-563 40-280 (397)
120 KOG0294 WD40 repeat-containing 99.9 7.8E-22 1.7E-26 187.6 21.6 239 201-519 41-283 (362)
121 KOG1332 Vesicle coat complex C 99.9 2.7E-22 5.8E-27 184.2 17.4 239 209-517 19-286 (299)
122 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.3E-20 2.9E-25 195.0 32.1 272 216-562 4-282 (300)
123 KOG0321 WD40 repeat-containing 99.9 3.6E-22 7.7E-27 205.8 19.6 254 254-564 53-352 (720)
124 KOG1446 Histone H3 (Lys4) meth 99.9 8E-21 1.7E-25 181.6 27.0 294 345-700 5-310 (311)
125 KOG1408 WD40 repeat protein [F 99.9 1.1E-21 2.5E-26 203.7 22.7 280 212-560 391-714 (1080)
126 KOG0305 Anaphase promoting com 99.9 1.2E-21 2.5E-26 204.6 22.5 237 203-518 217-462 (484)
127 KOG2096 WD40 repeat protein [G 99.9 1.7E-21 3.6E-26 185.2 21.2 297 347-695 79-402 (420)
128 KOG0301 Phospholipase A2-activ 99.9 7.4E-22 1.6E-26 205.5 20.4 238 244-559 8-249 (745)
129 KOG1273 WD40 repeat protein [G 99.9 2.5E-21 5.4E-26 183.9 21.0 242 253-564 26-285 (405)
130 KOG2048 WD40 repeat protein [G 99.9 6.7E-20 1.4E-24 190.8 33.3 249 250-562 25-278 (691)
131 KOG0646 WD40 repeat protein [G 99.9 3E-21 6.6E-26 192.7 21.4 254 222-545 60-335 (476)
132 KOG2445 Nuclear pore complex c 99.9 1.4E-20 3E-25 178.6 24.7 252 247-561 10-320 (361)
133 KOG0321 WD40 repeat-containing 99.9 1.2E-20 2.6E-25 194.7 26.1 280 215-563 66-395 (720)
134 KOG2048 WD40 repeat protein [G 99.9 1.9E-19 4.2E-24 187.3 34.4 279 202-562 24-322 (691)
135 KOG0639 Transducin-like enhanc 99.9 1.1E-21 2.3E-26 196.5 16.7 244 247-562 416-666 (705)
136 KOG0302 Ribosome Assembly prot 99.9 3.8E-21 8.2E-26 186.9 19.9 259 246-556 147-435 (440)
137 KOG0270 WD40 repeat-containing 99.9 4.6E-21 1E-25 190.3 20.3 205 350-562 239-452 (463)
138 KOG4283 Transcription-coupled 99.9 1.4E-20 3.1E-25 177.1 22.5 292 200-558 40-364 (397)
139 KOG0269 WD40 repeat-containing 99.9 1.5E-21 3.2E-26 205.5 16.3 234 210-517 97-340 (839)
140 KOG0270 WD40 repeat-containing 99.9 9.2E-21 2E-25 188.2 17.1 243 212-522 191-454 (463)
141 KOG1274 WD40 repeat protein [G 99.9 1.4E-19 3E-24 194.4 26.0 268 207-556 19-297 (933)
142 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.4E-19 9.6E-24 183.6 29.0 244 357-652 33-290 (300)
143 KOG2445 Nuclear pore complex c 99.9 1.4E-19 3.1E-24 171.8 22.3 259 201-517 11-318 (361)
144 KOG0267 Microtubule severing p 99.8 1.8E-21 3.8E-26 203.4 9.9 235 245-551 23-260 (825)
145 KOG0302 Ribosome Assembly prot 99.8 5E-20 1.1E-24 179.2 18.7 237 216-513 168-435 (440)
146 KOG0646 WD40 repeat protein [G 99.8 5E-20 1.1E-24 184.1 19.2 246 203-517 81-350 (476)
147 KOG1273 WD40 repeat protein [G 99.8 2E-19 4.4E-24 171.0 21.7 286 204-562 26-325 (405)
148 KOG0650 WD40 repeat nucleolar 99.8 3.5E-19 7.5E-24 182.5 23.8 289 347-692 393-732 (733)
149 KOG4328 WD40 protein [Function 99.8 1.9E-19 4E-24 179.4 20.2 299 346-695 178-495 (498)
150 KOG1009 Chromatin assembly com 99.8 1.7E-19 3.7E-24 177.3 19.7 302 208-563 20-376 (434)
151 KOG4378 Nuclear protein COP1 [ 99.8 1.6E-19 3.5E-24 181.0 19.6 276 216-565 5-286 (673)
152 KOG0267 Microtubule severing p 99.8 6.6E-21 1.4E-25 199.1 10.1 219 211-508 38-259 (825)
153 KOG2055 WD40 repeat protein [G 99.8 4.7E-19 1E-23 176.7 22.5 275 354-694 213-511 (514)
154 KOG4227 WD40 repeat protein [G 99.8 4.2E-19 9.1E-24 173.0 20.2 261 242-562 48-325 (609)
155 KOG4328 WD40 protein [Function 99.8 5.7E-19 1.2E-23 176.0 20.9 287 207-559 192-495 (498)
156 KOG1963 WD40 repeat protein [G 99.8 1.3E-17 2.9E-22 179.1 30.6 456 212-694 26-537 (792)
157 KOG0303 Actin-binding protein 99.8 1.5E-18 3.2E-23 169.9 21.0 266 211-541 42-321 (472)
158 KOG1034 Transcriptional repres 99.8 1.3E-18 2.8E-23 166.7 20.0 275 216-558 57-382 (385)
159 KOG1445 Tumor-specific antigen 99.8 3.5E-18 7.6E-23 175.8 22.9 144 506-693 600-748 (1012)
160 KOG1188 WD40 repeat protein [G 99.8 1E-18 2.3E-23 168.3 17.4 281 214-562 41-349 (376)
161 KOG0642 Cell-cycle nuclear pro 99.8 4.4E-19 9.6E-24 181.3 13.7 260 245-562 289-564 (577)
162 KOG1188 WD40 repeat protein [G 99.8 5E-18 1.1E-22 163.6 19.5 192 366-563 41-246 (376)
163 KOG4378 Nuclear protein COP1 [ 99.8 3E-18 6.4E-23 171.9 17.8 208 214-496 92-303 (673)
164 KOG0307 Vesicle coat complex C 99.8 9.2E-19 2E-23 192.8 14.3 276 220-562 36-330 (1049)
165 KOG1034 Transcriptional repres 99.8 5.7E-18 1.2E-22 162.3 17.0 295 246-639 34-381 (385)
166 KOG2919 Guanine nucleotide-bin 99.8 4.7E-17 1E-21 155.6 22.6 248 254-562 53-330 (406)
167 KOG1538 Uncharacterized conser 99.8 1.9E-17 4E-22 171.4 21.2 268 207-560 18-294 (1081)
168 KOG0322 G-protein beta subunit 99.8 8.6E-18 1.9E-22 156.4 15.9 245 245-558 9-322 (323)
169 KOG0303 Actin-binding protein 99.8 3.3E-17 7.1E-22 160.5 20.4 225 330-562 57-297 (472)
170 KOG2919 Guanine nucleotide-bin 99.8 3.2E-17 7E-22 156.7 19.8 276 356-684 51-359 (406)
171 COG2319 FOG: WD40 repeat [Gene 99.8 5.4E-15 1.2E-19 159.5 39.2 372 245-696 60-443 (466)
172 KOG1517 Guanine nucleotide bin 99.7 6.3E-16 1.4E-20 168.1 27.1 297 207-562 1070-1384(1387)
173 KOG1587 Cytoplasmic dynein int 99.7 3.4E-16 7.4E-21 168.6 24.2 269 222-561 221-518 (555)
174 KOG1007 WD repeat protein TSSC 99.7 3.2E-16 7E-21 147.7 20.8 274 221-560 38-362 (370)
175 KOG1538 Uncharacterized conser 99.7 1E-16 2.2E-21 166.0 18.9 232 252-558 14-251 (1081)
176 KOG0642 Cell-cycle nuclear pro 99.7 3.6E-17 7.9E-22 167.4 14.6 254 208-523 301-567 (577)
177 KOG0307 Vesicle coat complex C 99.7 2.7E-17 5.9E-22 181.3 14.7 233 215-518 82-328 (1049)
178 PRK11028 6-phosphogluconolacto 99.7 4.5E-15 9.8E-20 156.0 30.3 275 219-560 8-305 (330)
179 KOG0644 Uncharacterized conser 99.7 1.6E-17 3.5E-22 176.1 10.3 247 236-563 176-430 (1113)
180 KOG1334 WD40 repeat protein [G 99.7 1.3E-16 2.7E-21 160.5 14.9 257 244-562 136-427 (559)
181 KOG0649 WD40 repeat protein [G 99.7 6.4E-15 1.4E-19 135.8 24.4 281 208-557 17-314 (325)
182 KOG1963 WD40 repeat protein [G 99.7 1.1E-14 2.3E-19 157.1 30.1 333 219-645 177-542 (792)
183 KOG0290 Conserved WD40 repeat- 99.7 2.3E-15 5E-20 142.2 21.8 204 352-562 94-321 (364)
184 KOG1445 Tumor-specific antigen 99.7 4.6E-16 1E-20 160.3 18.2 253 202-518 580-845 (1012)
185 COG2319 FOG: WD40 repeat [Gene 99.7 4.1E-14 8.9E-19 152.6 34.4 266 219-563 130-404 (466)
186 KOG1240 Protein kinase contain 99.7 7.6E-15 1.7E-19 162.3 28.4 256 245-562 1043-1337(1431)
187 KOG4227 WD40 repeat protein [G 99.7 1.4E-15 3E-20 148.6 20.0 293 201-558 54-386 (609)
188 KOG1009 Chromatin assembly com 99.7 3.4E-15 7.5E-20 147.3 20.7 293 250-637 13-368 (434)
189 KOG1517 Guanine nucleotide bin 99.7 9.1E-15 2E-19 159.3 25.4 295 250-644 1064-1384(1387)
190 KOG1523 Actin-related protein 99.7 6.7E-15 1.5E-19 141.1 20.7 241 249-551 9-270 (361)
191 KOG0290 Conserved WD40 repeat- 99.7 9.4E-15 2E-19 138.1 20.6 262 222-549 72-356 (364)
192 KOG1007 WD repeat protein TSSC 99.7 5.2E-15 1.1E-19 139.6 18.2 236 224-517 94-361 (370)
193 KOG1310 WD40 repeat protein [G 99.7 9.1E-16 2E-20 156.1 13.8 242 239-565 39-309 (758)
194 KOG1240 Protein kinase contain 99.6 1.4E-14 2.9E-19 160.4 22.7 306 196-557 1041-1431(1431)
195 KOG1310 WD40 repeat protein [G 99.6 5.6E-15 1.2E-19 150.4 18.2 225 186-468 33-305 (758)
196 KOG1587 Cytoplasmic dynein int 99.6 2.6E-14 5.7E-19 154.1 24.3 268 376-694 223-515 (555)
197 KOG1524 WD40 repeat-containing 99.6 7E-15 1.5E-19 149.3 18.2 183 347-555 97-282 (737)
198 KOG1334 WD40 repeat protein [G 99.6 2.9E-15 6.2E-20 150.9 15.0 308 190-562 129-469 (559)
199 KOG0322 G-protein beta subunit 99.6 3.9E-15 8.5E-20 138.9 14.5 294 345-695 5-323 (323)
200 KOG0649 WD40 repeat protein [G 99.6 1.4E-13 3E-18 127.0 23.5 198 201-467 60-275 (325)
201 KOG0771 Prolactin regulatory e 99.6 8.5E-15 1.8E-19 145.7 14.4 192 254-517 148-354 (398)
202 KOG2110 Uncharacterized conser 99.6 1.9E-12 4.1E-17 126.8 30.2 198 354-561 87-332 (391)
203 KOG2321 WD40 repeat protein [G 99.6 1E-13 2.2E-18 142.3 21.9 281 248-560 49-344 (703)
204 KOG0644 Uncharacterized conser 99.6 4.3E-15 9.4E-20 158.0 9.8 267 209-562 198-471 (1113)
205 KOG1523 Actin-related protein 99.6 8.7E-13 1.9E-17 126.8 23.9 232 349-586 5-266 (361)
206 PRK11028 6-phosphogluconolacto 99.6 1.1E-12 2.4E-17 137.9 27.4 202 355-561 35-260 (330)
207 KOG1524 WD40 repeat-containing 99.6 3.9E-14 8.4E-19 144.0 14.9 205 214-514 76-283 (737)
208 PRK01742 tolB translocation pr 99.6 3.7E-13 8E-18 146.2 22.9 233 221-540 182-426 (429)
209 KOG0771 Prolactin regulatory e 99.5 1.1E-13 2.3E-18 137.9 15.3 199 358-562 148-357 (398)
210 KOG2139 WD40 repeat protein [G 99.5 2.7E-12 6E-17 125.1 24.4 284 216-559 113-431 (445)
211 KOG2394 WD40 protein DMR-N9 [G 99.5 7.6E-13 1.6E-17 135.0 19.5 191 364-563 183-456 (636)
212 KOG1272 WD40-repeat-containing 99.5 8.2E-14 1.8E-18 139.7 10.5 275 357-643 132-423 (545)
213 KOG4497 Uncharacterized conser 99.5 6.8E-12 1.5E-16 120.8 23.0 282 206-561 13-393 (447)
214 PRK01742 tolB translocation pr 99.5 2.2E-12 4.8E-17 140.1 21.3 196 349-559 198-401 (429)
215 KOG1272 WD40-repeat-containing 99.5 1.2E-13 2.6E-18 138.5 9.9 231 250-557 129-360 (545)
216 PRK03629 tolB translocation pr 99.5 1.3E-11 2.8E-16 133.8 26.6 233 223-539 179-427 (429)
217 KOG2139 WD40 repeat protein [G 99.5 8.7E-12 1.9E-16 121.6 21.0 311 354-699 98-439 (445)
218 KOG2394 WD40 protein DMR-N9 [G 99.5 2.7E-12 5.8E-17 131.1 17.5 198 211-446 183-384 (636)
219 PRK04922 tolB translocation pr 99.4 1.7E-11 3.6E-16 133.5 25.1 233 223-539 184-432 (433)
220 KOG4497 Uncharacterized conser 99.4 4.6E-13 1E-17 128.7 11.2 223 255-558 13-239 (447)
221 PRK05137 tolB translocation pr 99.4 4.1E-11 9E-16 130.6 26.7 232 223-539 182-432 (435)
222 KOG2110 Uncharacterized conser 99.4 8.8E-11 1.9E-15 115.3 25.5 236 250-562 5-251 (391)
223 PF08662 eIF2A: Eukaryotic tra 99.4 1.9E-11 4.2E-16 116.8 19.9 111 354-468 59-181 (194)
224 KOG2111 Uncharacterized conser 99.4 7.5E-11 1.6E-15 113.6 23.3 177 375-562 75-259 (346)
225 KOG3881 Uncharacterized conser 99.4 2.8E-11 6.1E-16 119.5 20.5 203 351-562 102-323 (412)
226 KOG3881 Uncharacterized conser 99.4 6.5E-11 1.4E-15 117.0 21.6 222 247-539 102-341 (412)
227 PRK05137 tolB translocation pr 99.4 1.8E-10 3.9E-15 125.5 27.7 202 348-562 195-415 (435)
228 KOG1354 Serine/threonine prote 99.4 4.6E-11 9.9E-16 115.9 18.7 264 250-562 25-362 (433)
229 PF02239 Cytochrom_D1: Cytochr 99.4 8.2E-10 1.8E-14 116.3 30.1 273 218-563 11-351 (369)
230 KOG2111 Uncharacterized conser 99.4 9.5E-10 2.1E-14 106.1 27.4 197 353-559 93-322 (346)
231 PRK02889 tolB translocation pr 99.3 2.2E-10 4.8E-15 124.3 25.5 219 246-540 191-425 (427)
232 KOG2315 Predicted translation 99.3 6.9E-10 1.5E-14 114.7 27.1 306 211-562 43-393 (566)
233 PRK03629 tolB translocation pr 99.3 2.7E-10 5.8E-15 123.6 25.7 203 347-562 191-409 (429)
234 PF10282 Lactonase: Lactonase, 99.3 7.1E-09 1.5E-13 109.3 34.3 273 222-559 12-322 (345)
235 KOG1409 Uncharacterized conser 99.3 4.5E-11 9.7E-16 116.1 15.3 248 244-562 18-273 (404)
236 PRK04922 tolB translocation pr 99.3 3.1E-10 6.7E-15 123.6 23.9 204 345-561 194-413 (433)
237 PF08662 eIF2A: Eukaryotic tra 99.3 2.5E-10 5.4E-15 109.2 19.3 149 399-562 10-182 (194)
238 KOG0974 WD-repeat protein WDR6 99.3 7.9E-10 1.7E-14 122.0 25.2 144 212-426 144-289 (967)
239 TIGR02800 propeller_TolB tol-p 99.3 7.1E-10 1.5E-14 120.7 25.2 197 245-516 184-396 (417)
240 PF02239 Cytochrom_D1: Cytochr 99.3 1.1E-09 2.4E-14 115.3 24.7 195 367-563 8-206 (369)
241 PRK02889 tolB translocation pr 99.3 1.9E-09 4E-14 117.1 26.9 196 350-558 191-402 (427)
242 KOG2315 Predicted translation 99.2 4.5E-09 9.7E-14 108.8 26.1 319 251-700 35-395 (566)
243 KOG1354 Serine/threonine prote 99.2 5.5E-10 1.2E-14 108.6 17.9 276 208-517 32-359 (433)
244 TIGR02800 propeller_TolB tol-p 99.2 3.5E-09 7.5E-14 115.3 26.8 197 350-559 185-397 (417)
245 KOG2041 WD40 repeat protein [G 99.2 2.8E-10 6E-15 119.9 16.1 252 249-550 13-279 (1189)
246 PRK04792 tolB translocation pr 99.2 4.5E-09 9.7E-14 114.5 25.7 218 246-539 213-446 (448)
247 KOG2321 WD40 repeat protein [G 99.2 3.5E-09 7.7E-14 109.5 22.6 280 352-693 49-341 (703)
248 KOG1409 Uncharacterized conser 99.2 2.8E-09 6.2E-14 103.8 20.0 234 210-517 33-270 (404)
249 KOG0974 WD-repeat protein WDR6 99.2 5.3E-09 1.1E-13 115.6 24.3 193 208-468 94-290 (967)
250 PRK00178 tolB translocation pr 99.2 7.1E-09 1.5E-13 113.1 25.5 219 245-539 193-427 (430)
251 COG2706 3-carboxymuconate cycl 99.2 1.2E-07 2.5E-12 94.0 30.8 276 222-562 15-324 (346)
252 KOG0280 Uncharacterized conser 99.2 4.8E-09 1E-13 100.2 19.9 199 356-562 123-336 (339)
253 PRK00178 tolB translocation pr 99.1 1.6E-08 3.4E-13 110.4 24.9 202 347-561 191-408 (430)
254 KOG4190 Uncharacterized conser 99.1 5.5E-10 1.2E-14 114.4 12.1 272 212-555 746-1032(1034)
255 COG5354 Uncharacterized protei 99.1 6E-08 1.3E-12 99.4 26.4 311 208-562 39-398 (561)
256 PF04762 IKI3: IKI3 family; I 99.1 1.4E-07 3E-12 110.2 32.4 331 204-562 76-459 (928)
257 TIGR02658 TTQ_MADH_Hv methylam 99.1 4.8E-07 1E-11 93.3 31.1 271 223-563 27-334 (352)
258 KOG4547 WD40 repeat-containing 99.0 4.4E-08 9.5E-13 102.4 23.3 139 367-516 72-219 (541)
259 COG5354 Uncharacterized protei 99.0 1.1E-07 2.4E-12 97.5 24.3 235 249-561 31-308 (561)
260 PRK04792 tolB translocation pr 99.0 5.2E-08 1.1E-12 106.2 23.3 201 348-561 211-427 (448)
261 KOG1064 RAVE (regulator of V-A 99.0 2.3E-09 5E-14 123.6 11.7 191 351-562 2205-2401(2439)
262 TIGR03300 assembly_YfgL outer 99.0 3.9E-07 8.5E-12 97.7 28.3 266 365-693 105-377 (377)
263 KOG4532 WD40-like repeat conta 99.0 1.7E-07 3.7E-12 88.6 21.8 190 367-561 130-333 (344)
264 KOG0280 Uncharacterized conser 99.0 2.2E-08 4.7E-13 95.8 15.9 191 216-471 88-289 (339)
265 KOG2041 WD40 repeat protein [G 99.0 4.4E-08 9.6E-13 103.7 19.4 278 204-555 15-333 (1189)
266 KOG1064 RAVE (regulator of V-A 98.9 1.7E-09 3.6E-14 124.7 9.0 216 210-509 2217-2438(2439)
267 COG5170 CDC55 Serine/threonine 98.9 4.1E-09 8.9E-14 101.1 10.2 248 249-566 25-316 (460)
268 PLN02919 haloacid dehalogenase 98.9 1.3E-06 2.7E-11 104.3 31.8 205 356-562 625-891 (1057)
269 KOG4190 Uncharacterized conser 98.9 4.8E-09 1E-13 107.6 9.8 210 345-562 726-951 (1034)
270 KOG2314 Translation initiation 98.9 3.9E-07 8.6E-12 94.3 23.4 319 208-562 217-576 (698)
271 PRK01029 tolB translocation pr 98.9 7.6E-07 1.6E-11 96.4 26.7 173 357-541 233-426 (428)
272 PRK01029 tolB translocation pr 98.9 4.3E-07 9.4E-12 98.3 24.5 203 350-562 180-406 (428)
273 PF15492 Nbas_N: Neuroblastoma 98.8 1.7E-06 3.7E-11 83.4 24.0 188 356-562 45-262 (282)
274 KOG4547 WD40 repeat-containing 98.8 3.1E-07 6.8E-12 96.1 20.5 183 367-560 7-221 (541)
275 PF10282 Lactonase: Lactonase, 98.8 6.9E-06 1.5E-10 86.6 29.9 270 209-537 44-345 (345)
276 KOG0309 Conserved WD40 repeat- 98.8 5.5E-08 1.2E-12 103.5 12.5 286 250-561 24-341 (1081)
277 COG4946 Uncharacterized protei 98.8 2E-06 4.3E-11 87.6 22.9 107 348-455 395-507 (668)
278 KOG2314 Translation initiation 98.8 2E-06 4.3E-11 89.2 22.6 230 253-560 213-479 (698)
279 KOG4714 Nucleoporin [Nuclear s 98.8 1.5E-07 3.2E-12 88.7 13.3 196 357-560 39-255 (319)
280 KOG1912 WD40 repeat protein [G 98.7 9.1E-07 2E-11 95.0 19.3 283 206-565 18-370 (1062)
281 PF08450 SGL: SMP-30/Gluconola 98.7 2.9E-05 6.2E-10 77.8 29.5 184 357-547 42-243 (246)
282 COG2706 3-carboxymuconate cycl 98.7 1.8E-05 3.9E-10 78.8 26.8 203 352-561 37-276 (346)
283 TIGR02658 TTQ_MADH_Hv methylam 98.7 1.2E-05 2.5E-10 83.2 26.3 231 221-471 75-335 (352)
284 PLN02919 haloacid dehalogenase 98.6 1.1E-05 2.3E-10 96.4 28.2 259 358-645 571-892 (1057)
285 TIGR03300 assembly_YfgL outer 98.6 2.3E-05 5.1E-10 83.9 28.1 180 365-562 145-341 (377)
286 COG5170 CDC55 Serine/threonine 98.6 3.7E-07 8E-12 88.0 12.1 242 205-471 28-314 (460)
287 KOG4714 Nucleoporin [Nuclear s 98.6 3.9E-07 8.4E-12 85.9 11.4 93 375-467 159-255 (319)
288 KOG1912 WD40 repeat protein [G 98.6 4.6E-06 1E-10 89.8 20.8 243 253-560 18-305 (1062)
289 PF04762 IKI3: IKI3 family; I 98.6 0.00012 2.5E-09 86.1 34.6 297 249-562 208-567 (928)
290 PRK04043 tolB translocation pr 98.6 1.9E-05 4.2E-10 84.9 26.0 192 356-562 189-403 (419)
291 PF13360 PQQ_2: PQQ-like domai 98.6 3.6E-05 7.8E-10 76.6 25.8 192 363-562 34-233 (238)
292 KOG0309 Conserved WD40 repeat- 98.6 1.7E-07 3.6E-12 99.9 8.3 238 215-517 83-339 (1081)
293 KOG3914 WD repeat protein WDR4 98.5 8.2E-07 1.8E-11 88.9 12.4 100 370-471 127-228 (390)
294 PRK04043 tolB translocation pr 98.5 2.7E-05 5.8E-10 83.8 24.5 149 355-517 233-400 (419)
295 COG4946 Uncharacterized protei 98.5 9.1E-05 2E-09 75.8 24.9 169 367-548 334-507 (668)
296 PF00400 WD40: WD domain, G-be 98.5 3.8E-07 8.2E-12 62.1 5.6 35 244-278 5-39 (39)
297 KOG0882 Cyclophilin-related pe 98.4 1.7E-06 3.8E-11 87.5 11.6 204 352-563 7-235 (558)
298 KOG4532 WD40-like repeat conta 98.4 2.6E-05 5.6E-10 74.2 18.2 192 365-562 84-285 (344)
299 KOG3914 WD repeat protein WDR4 98.4 4.9E-06 1.1E-10 83.5 13.8 155 358-522 66-228 (390)
300 PF15492 Nbas_N: Neuroblastoma 98.4 0.00016 3.5E-09 70.1 23.2 241 213-524 8-266 (282)
301 KOG2695 WD40 repeat protein [G 98.4 8.9E-07 1.9E-11 86.8 7.8 148 411-563 228-380 (425)
302 PRK11138 outer membrane biogen 98.4 0.00023 5E-09 76.7 27.6 191 365-562 120-315 (394)
303 KOG0882 Cyclophilin-related pe 98.4 4.1E-06 9E-11 84.9 12.3 249 202-470 8-309 (558)
304 KOG1275 PAB-dependent poly(A) 98.3 2.2E-05 4.8E-10 86.3 18.0 177 367-557 149-340 (1118)
305 PF00400 WD40: WD domain, G-be 98.2 2.9E-06 6.2E-11 57.7 5.8 37 345-381 2-39 (39)
306 KOG2695 WD40 repeat protein [G 98.2 3.1E-06 6.8E-11 83.0 8.0 122 353-474 251-384 (425)
307 KOG1275 PAB-dependent poly(A) 98.2 1.6E-05 3.5E-10 87.3 14.2 184 210-465 144-341 (1118)
308 KOG1645 RING-finger-containing 98.2 7.3E-05 1.6E-09 75.1 16.8 82 346-427 185-268 (463)
309 KOG1832 HIV-1 Vpr-binding prot 98.2 1.3E-06 2.9E-11 94.9 4.0 202 236-471 1087-1296(1516)
310 PRK02888 nitrous-oxide reducta 98.2 0.00021 4.6E-09 77.8 20.7 144 373-519 213-406 (635)
311 PF07433 DUF1513: Protein of u 98.1 0.0021 4.5E-08 64.4 25.6 231 255-554 9-280 (305)
312 KOG2066 Vacuolar assembly/sort 98.1 0.00024 5.1E-09 77.6 19.7 145 363-517 80-233 (846)
313 KOG2114 Vacuolar assembly/sort 98.1 0.0008 1.7E-08 74.2 23.7 168 348-525 58-251 (933)
314 PF08450 SGL: SMP-30/Gluconola 98.1 0.0036 7.9E-08 62.6 27.3 187 359-559 4-213 (246)
315 PRK11138 outer membrane biogen 98.1 0.0028 6.2E-08 68.2 27.4 178 366-558 206-393 (394)
316 KOG1645 RING-finger-containing 98.0 0.00014 2.9E-09 73.3 14.6 80 243-385 186-268 (463)
317 PF06433 Me-amine-dh_H: Methyl 98.0 0.0053 1.1E-07 62.3 25.7 272 223-562 17-323 (342)
318 PF04053 Coatomer_WDAD: Coatom 98.0 0.0017 3.8E-08 69.8 23.8 182 356-560 70-263 (443)
319 KOG1008 Uncharacterized conser 98.0 2.4E-06 5.1E-11 90.3 1.9 197 354-560 56-276 (783)
320 PF13360 PQQ_2: PQQ-like domai 98.0 0.0015 3.3E-08 64.8 21.6 182 373-562 1-194 (238)
321 KOG1008 Uncharacterized conser 98.0 4.4E-06 9.5E-11 88.4 3.1 238 215-516 72-334 (783)
322 PF07433 DUF1513: Protein of u 98.0 0.0039 8.4E-08 62.5 23.7 200 357-562 7-250 (305)
323 PF08596 Lgl_C: Lethal giant l 98.0 0.0036 7.8E-08 66.5 25.1 278 252-558 3-334 (395)
324 KOG1832 HIV-1 Vpr-binding prot 97.9 7.6E-06 1.7E-10 89.2 4.2 198 345-562 1092-1294(1516)
325 KOG2066 Vacuolar assembly/sort 97.9 9.6E-05 2.1E-09 80.6 12.4 147 393-562 38-190 (846)
326 PF11768 DUF3312: Protein of u 97.9 0.0024 5.3E-08 68.1 22.3 90 378-469 239-332 (545)
327 KOG3617 WD40 and TPR repeat-co 97.9 0.00016 3.6E-09 78.8 13.7 107 358-466 19-131 (1416)
328 PF06977 SdiA-regulated: SdiA- 97.9 0.0046 1E-07 61.0 22.6 205 349-556 16-247 (248)
329 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.016 3.5E-07 55.5 24.7 105 367-473 25-130 (354)
330 PF11768 DUF3312: Protein of u 97.8 0.00065 1.4E-08 72.4 16.8 95 460-562 238-332 (545)
331 KOG1920 IkappaB kinase complex 97.8 0.0028 6.1E-08 72.7 22.6 200 249-519 67-324 (1265)
332 KOG1920 IkappaB kinase complex 97.8 0.0014 3E-08 75.1 20.1 197 354-561 68-324 (1265)
333 KOG3621 WD40 repeat-containing 97.8 0.0019 4.1E-08 70.0 20.1 156 206-427 38-199 (726)
334 KOG2114 Vacuolar assembly/sort 97.8 0.0017 3.6E-08 71.8 19.4 197 356-562 27-246 (933)
335 PF08596 Lgl_C: Lethal giant l 97.7 0.013 2.8E-07 62.3 23.5 204 356-563 3-294 (395)
336 KOG3617 WD40 and TPR repeat-co 97.6 0.0016 3.4E-08 71.5 15.8 268 207-549 21-375 (1416)
337 PF00780 CNH: CNH domain; Int 97.6 0.031 6.7E-07 56.8 25.2 194 356-563 37-259 (275)
338 PF03178 CPSF_A: CPSF A subuni 97.5 0.022 4.7E-07 59.5 22.4 170 375-556 62-262 (321)
339 KOG3621 WD40 repeat-containing 97.5 0.00082 1.8E-08 72.6 11.6 112 355-467 34-155 (726)
340 COG0823 TolB Periplasmic compo 97.4 0.012 2.6E-07 63.2 19.3 190 348-549 186-389 (425)
341 PF03178 CPSF_A: CPSF A subuni 97.4 0.049 1.1E-06 56.8 23.2 173 375-560 2-203 (321)
342 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.017 3.7E-07 48.5 15.1 99 357-461 2-109 (111)
343 PF04841 Vps16_N: Vps16, N-ter 97.3 0.051 1.1E-06 58.5 22.5 175 376-561 62-248 (410)
344 cd00216 PQQ_DH Dehydrogenases 97.3 0.14 3E-06 56.8 26.2 176 373-563 173-428 (488)
345 PF08553 VID27: VID27 cytoplas 97.2 0.0076 1.6E-07 68.5 15.2 148 406-559 492-647 (794)
346 COG3391 Uncharacterized conser 97.1 0.13 2.8E-06 55.0 23.7 199 358-562 77-286 (381)
347 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.022 4.7E-07 47.9 13.6 103 397-513 2-110 (111)
348 smart00320 WD40 WD40 repeats. 97.1 0.00087 1.9E-08 44.0 4.4 34 245-278 7-40 (40)
349 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.14 2.9E-06 54.3 22.7 198 354-558 42-312 (353)
350 PF06977 SdiA-regulated: SdiA- 97.0 0.25 5.4E-06 48.9 22.5 199 245-462 16-246 (248)
351 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.12 2.6E-06 49.7 18.7 139 406-554 22-160 (354)
352 KOG4640 Anaphase-promoting com 96.9 0.0035 7.7E-08 67.1 9.2 91 354-446 20-115 (665)
353 PF05694 SBP56: 56kDa selenium 96.9 0.54 1.2E-05 49.5 24.1 185 363-548 138-392 (461)
354 PRK02888 nitrous-oxide reducta 96.9 0.061 1.3E-06 59.2 18.2 135 416-560 214-405 (635)
355 COG3386 Gluconolactonase [Carb 96.9 0.37 8E-06 49.4 23.0 177 363-548 75-274 (307)
356 PF04841 Vps16_N: Vps16, N-ter 96.9 0.64 1.4E-05 50.1 25.9 81 406-496 189-269 (410)
357 PF02897 Peptidase_S9_N: Proly 96.8 1.1 2.3E-05 48.6 29.0 198 359-562 174-407 (414)
358 cd00216 PQQ_DH Dehydrogenases 96.8 0.33 7.2E-06 53.8 23.5 155 366-525 111-327 (488)
359 PF06433 Me-amine-dh_H: Methyl 96.7 0.69 1.5E-05 47.3 23.0 147 367-523 149-326 (342)
360 PF08553 VID27: VID27 cytoplas 96.7 0.075 1.6E-06 60.7 17.9 96 367-465 544-646 (794)
361 KOG4640 Anaphase-promoting com 96.7 0.0071 1.5E-07 64.9 9.2 96 393-496 19-115 (665)
362 KOG4441 Proteins containing BT 96.7 0.23 5.1E-06 55.8 21.5 194 358-561 326-548 (571)
363 COG3204 Uncharacterized protei 96.7 0.18 3.8E-06 49.8 17.6 167 351-518 82-264 (316)
364 KOG2395 Protein involved in va 96.6 0.037 8.1E-07 58.4 13.1 145 409-559 348-500 (644)
365 smart00320 WD40 WD40 repeats. 96.5 0.0047 1E-07 40.3 4.5 37 345-381 3-40 (40)
366 PF05096 Glu_cyclase_2: Glutam 96.5 0.87 1.9E-05 45.0 21.6 189 252-505 46-249 (264)
367 COG0823 TolB Periplasmic compo 96.5 0.17 3.6E-06 54.6 18.1 109 359-469 242-361 (425)
368 KOG1897 Damage-specific DNA bi 96.5 2.4 5.2E-05 48.7 29.1 277 251-562 584-901 (1096)
369 COG3391 Uncharacterized conser 96.4 1.5 3.3E-05 46.8 24.6 176 356-540 117-309 (381)
370 PF14727 PHTB1_N: PTHB1 N-term 96.3 2 4.4E-05 45.9 28.6 185 367-562 147-363 (418)
371 PF14583 Pectate_lyase22: Olig 96.3 1.8 3.9E-05 45.2 24.9 175 374-559 167-381 (386)
372 KOG2444 WD40 repeat protein [G 96.3 0.0061 1.3E-07 57.5 4.9 143 410-562 33-180 (238)
373 PF00780 CNH: CNH domain; Int 96.2 1.7 3.6E-05 44.1 26.0 234 211-521 5-259 (275)
374 PHA02713 hypothetical protein; 96.0 0.31 6.7E-06 54.9 17.7 185 365-562 303-536 (557)
375 PF04053 Coatomer_WDAD: Coatom 95.9 0.49 1.1E-05 51.2 18.2 133 366-517 117-262 (443)
376 PF15390 DUF4613: Domain of un 95.9 0.25 5.5E-06 53.2 15.3 155 394-560 19-187 (671)
377 COG3204 Uncharacterized protei 95.9 1.9 4E-05 42.9 20.0 163 244-468 79-265 (316)
378 KOG1897 Damage-specific DNA bi 95.9 4.7 0.0001 46.5 28.8 331 209-560 265-614 (1096)
379 PRK13616 lipoprotein LpqB; Pro 95.7 0.51 1.1E-05 53.1 17.7 184 355-551 350-560 (591)
380 KOG1916 Nuclear protein, conta 95.6 0.0047 1E-07 68.6 1.5 139 416-559 110-265 (1283)
381 KOG3630 Nuclear pore complex, 95.5 0.091 2E-06 60.4 10.7 125 437-561 101-230 (1405)
382 PF00930 DPPIV_N: Dipeptidyl p 95.5 4.2 9.1E-05 42.9 29.6 288 221-547 21-345 (353)
383 KOG2395 Protein involved in va 95.4 2.2 4.8E-05 45.6 19.7 95 369-466 398-500 (644)
384 COG3490 Uncharacterized protei 95.4 0.37 8.1E-06 47.2 12.9 211 243-464 112-346 (366)
385 PF10168 Nup88: Nuclear pore c 95.3 2.4 5.2E-05 48.8 21.6 34 352-385 144-181 (717)
386 PF05096 Glu_cyclase_2: Glutam 95.3 3.5 7.5E-05 40.9 23.3 185 355-548 45-249 (264)
387 PF12894 Apc4_WD40: Anaphase-p 95.2 0.059 1.3E-06 37.9 5.3 33 250-283 11-43 (47)
388 KOG2079 Vacuolar assembly/sort 95.1 0.26 5.6E-06 56.6 12.5 79 207-291 93-171 (1206)
389 PF14583 Pectate_lyase22: Olig 95.0 2.6 5.6E-05 44.1 18.8 183 361-550 87-303 (386)
390 TIGR02604 Piru_Ver_Nterm putat 94.9 5.9 0.00013 42.1 22.4 98 356-455 73-202 (367)
391 PRK13616 lipoprotein LpqB; Pro 94.9 1 2.2E-05 50.8 17.0 158 395-558 350-524 (591)
392 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.8 8.6 0.00019 43.0 28.7 97 374-471 180-338 (527)
393 PF05694 SBP56: 56kDa selenium 94.7 3 6.6E-05 44.1 18.3 95 374-469 221-345 (461)
394 KOG2079 Vacuolar assembly/sort 94.7 0.52 1.1E-05 54.3 13.6 96 367-465 101-202 (1206)
395 PF15390 DUF4613: Domain of un 94.6 1.4 3.1E-05 47.7 15.9 115 352-467 54-187 (671)
396 KOG3630 Nuclear pore complex, 94.5 0.15 3.2E-06 58.7 9.1 143 356-504 102-260 (1405)
397 PHA03098 kelch-like protein; P 94.5 1.8 3.9E-05 48.7 18.2 181 367-561 297-513 (534)
398 PF07995 GSDH: Glucose / Sorbo 94.5 7.1 0.00015 40.8 23.1 68 487-554 253-330 (331)
399 KOG4441 Proteins containing BT 94.5 1.6 3.5E-05 49.1 17.4 184 367-562 287-502 (571)
400 PF12894 Apc4_WD40: Anaphase-p 94.5 0.12 2.6E-06 36.3 5.3 32 528-559 10-41 (47)
401 PF14727 PHTB1_N: PTHB1 N-term 94.4 2.4 5.2E-05 45.3 17.4 147 406-559 36-204 (418)
402 PF02897 Peptidase_S9_N: Proly 94.4 9 0.0002 41.4 25.1 194 357-559 126-357 (414)
403 PF14655 RAB3GAP2_N: Rab3 GTPa 94.3 8.8 0.00019 41.1 21.8 88 359-446 6-118 (415)
404 COG3490 Uncharacterized protei 94.3 6.1 0.00013 39.1 20.1 196 348-557 113-346 (366)
405 TIGR03074 PQQ_membr_DH membran 94.3 11 0.00024 44.0 23.6 198 365-563 194-481 (764)
406 PF14655 RAB3GAP2_N: Rab3 GTPa 94.1 9.6 0.00021 40.8 21.8 75 487-562 308-401 (415)
407 PHA02790 Kelch-like protein; P 93.4 4.7 0.0001 44.6 18.3 180 367-562 274-473 (480)
408 COG5276 Uncharacterized conser 93.4 9.1 0.0002 38.1 23.0 200 349-563 36-245 (370)
409 PF14781 BBS2_N: Ciliary BBSom 93.3 4.3 9.4E-05 35.5 13.7 107 361-469 5-128 (136)
410 KOG2377 Uncharacterized conser 93.3 3.7 8E-05 43.2 15.5 72 207-282 26-98 (657)
411 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.3 14 0.00029 41.4 21.6 194 365-563 69-337 (527)
412 PHA02713 hypothetical protein; 93.2 4.2 9.1E-05 45.9 17.6 94 376-471 273-380 (557)
413 KOG2444 WD40 repeat protein [G 92.9 0.31 6.7E-06 46.3 6.7 101 367-467 72-178 (238)
414 PF14761 HPS3_N: Hermansky-Pud 92.4 5.8 0.00013 37.9 14.4 146 408-558 29-213 (215)
415 KOG1916 Nuclear protein, conta 92.3 0.016 3.5E-07 64.5 -2.9 61 222-282 152-215 (1283)
416 PF10647 Gmad1: Lipoprotein Lp 92.3 9.8 0.00021 38.0 17.2 147 396-551 25-187 (253)
417 COG3386 Gluconolactonase [Carb 92.2 15 0.00033 37.7 20.1 188 361-562 31-245 (307)
418 PF10647 Gmad1: Lipoprotein Lp 92.2 13 0.00029 37.0 20.5 150 356-507 25-185 (253)
419 TIGR03074 PQQ_membr_DH membran 91.7 32 0.00069 40.3 23.4 159 366-524 261-484 (764)
420 TIGR02604 Piru_Ver_Nterm putat 91.6 7 0.00015 41.5 16.2 151 395-550 14-204 (367)
421 PF10313 DUF2415: Uncharacteri 91.2 0.75 1.6E-05 31.4 5.2 32 251-282 1-35 (43)
422 PF12234 Rav1p_C: RAVE protein 91.1 9 0.0002 43.1 16.6 112 438-558 31-155 (631)
423 PF12234 Rav1p_C: RAVE protein 90.6 9.6 0.00021 42.9 16.1 113 397-516 32-155 (631)
424 PF03022 MRJP: Major royal jel 90.2 24 0.00051 36.0 18.8 167 376-547 35-253 (287)
425 PHA03098 kelch-like protein; P 90.0 11 0.00024 42.3 16.9 103 367-471 345-469 (534)
426 KOG4499 Ca2+-binding protein R 89.6 20 0.00044 34.5 15.1 141 356-506 110-273 (310)
427 TIGR03118 PEPCTERM_chp_1 conse 89.6 25 0.00054 35.5 19.4 204 356-562 24-282 (336)
428 KOG4499 Ca2+-binding protein R 89.2 22 0.00048 34.3 19.1 143 394-539 108-263 (310)
429 PHA02790 Kelch-like protein; P 88.9 29 0.00062 38.4 18.6 102 365-471 318-428 (480)
430 PF14781 BBS2_N: Ciliary BBSom 88.5 14 0.0003 32.5 12.1 107 399-516 3-124 (136)
431 PF08728 CRT10: CRT10; InterP 88.4 20 0.00044 40.8 16.7 109 356-465 102-245 (717)
432 COG5167 VID27 Protein involved 88.3 7.8 0.00017 41.4 12.4 148 406-561 478-634 (776)
433 PF10313 DUF2415: Uncharacteri 87.6 1.7 3.8E-05 29.6 4.8 32 395-426 1-34 (43)
434 PF14870 PSII_BNR: Photosynthe 87.6 36 0.00078 34.8 21.3 189 357-562 64-263 (302)
435 PF14761 HPS3_N: Hermansky-Pud 87.5 15 0.00033 35.1 12.9 110 358-469 21-166 (215)
436 COG3823 Glutamine cyclotransfe 87.3 15 0.00032 34.8 12.2 86 367-454 142-246 (262)
437 PF10168 Nup88: Nuclear pore c 87.0 14 0.00029 42.8 14.7 82 437-518 85-180 (717)
438 PF07569 Hira: TUP1-like enhan 86.7 4.1 8.9E-05 39.6 9.1 63 498-561 21-97 (219)
439 PF11635 Med16: Mediator compl 86.6 72 0.0016 37.5 20.8 68 393-461 258-345 (753)
440 PF07569 Hira: TUP1-like enhan 86.5 4.8 0.0001 39.2 9.4 72 394-469 12-98 (219)
441 PRK13684 Ycf48-like protein; P 86.1 25 0.00055 36.7 15.3 107 354-464 214-329 (334)
442 TIGR03548 mutarot_permut cycli 86.0 46 0.00099 34.5 17.4 103 367-471 75-199 (323)
443 PF13449 Phytase-like: Esteras 85.8 48 0.001 34.5 17.5 162 395-559 20-249 (326)
444 COG5167 VID27 Protein involved 84.7 17 0.00036 39.1 12.6 139 367-517 482-632 (776)
445 KOG2377 Uncharacterized conser 84.2 62 0.0013 34.5 17.1 115 351-468 63-187 (657)
446 KOG2280 Vacuolar assembly/sort 84.0 28 0.00062 39.3 14.5 194 356-562 45-249 (829)
447 KOG2280 Vacuolar assembly/sort 83.9 84 0.0018 35.8 19.7 39 435-473 215-253 (829)
448 PF07995 GSDH: Glucose / Sorbo 83.5 21 0.00045 37.3 13.3 112 438-552 3-136 (331)
449 PRK10115 protease 2; Provision 83.5 96 0.0021 36.1 29.3 194 358-562 175-397 (686)
450 COG3823 Glutamine cyclotransfe 83.5 42 0.00091 31.9 14.0 174 367-547 58-247 (262)
451 KOG1898 Splicing factor 3b, su 81.6 79 0.0017 37.4 17.2 172 377-561 855-1050(1205)
452 PLN02193 nitrile-specifier pro 80.3 99 0.0021 34.1 22.4 145 367-519 178-353 (470)
453 PF14870 PSII_BNR: Photosynthe 80.2 74 0.0016 32.6 28.9 156 393-556 143-301 (302)
454 PLN02153 epithiospecifier prot 79.1 87 0.0019 32.7 21.8 102 367-471 35-172 (341)
455 KOG2247 WD40 repeat-containing 78.2 0.32 6.9E-06 51.2 -2.4 97 354-453 74-176 (615)
456 TIGR03606 non_repeat_PQQ dehyd 78.2 1.1E+02 0.0024 33.4 18.4 113 394-508 29-166 (454)
457 PF10214 Rrn6: RNA polymerase 77.9 1.5E+02 0.0033 34.9 27.1 158 353-518 78-277 (765)
458 TIGR03547 muta_rot_YjhT mutatr 77.8 95 0.0021 32.5 19.0 40 417-456 168-209 (346)
459 KOG1983 Tomosyn and related SN 77.4 47 0.001 40.2 14.8 26 538-563 243-268 (993)
460 PF12657 TFIIIC_delta: Transcr 76.8 15 0.00033 34.2 8.7 30 355-384 86-122 (173)
461 PF08728 CRT10: CRT10; InterP 76.7 22 0.00048 40.6 11.1 106 406-516 113-245 (717)
462 KOG1900 Nuclear pore complex, 76.2 23 0.0005 42.6 11.4 142 415-560 97-273 (1311)
463 KOG4460 Nuclear pore complex, 76.2 42 0.00091 36.3 12.2 86 438-523 105-204 (741)
464 PF11635 Med16: Mediator compl 74.6 1.8E+02 0.004 34.2 19.3 67 487-554 260-345 (753)
465 KOG2247 WD40 repeat-containing 74.1 0.7 1.5E-05 48.8 -1.2 146 397-554 37-183 (615)
466 COG4590 ABC-type uncharacteriz 73.9 13 0.00028 39.2 7.7 102 367-470 282-390 (733)
467 PRK13684 Ycf48-like protein; P 72.2 1.3E+02 0.0028 31.4 17.6 151 354-516 172-330 (334)
468 PF10214 Rrn6: RNA polymerase 71.9 2.1E+02 0.0046 33.8 23.5 110 355-468 146-278 (765)
469 PF12768 Rax2: Cortical protei 71.5 99 0.0022 31.3 13.4 91 374-465 15-122 (281)
470 PLN00033 photosystem II stabil 70.8 1.5E+02 0.0034 31.7 16.2 151 354-514 238-396 (398)
471 COG5276 Uncharacterized conser 70.6 1.2E+02 0.0027 30.5 27.4 278 203-559 86-369 (370)
472 KOG1983 Tomosyn and related SN 70.4 1.5E+02 0.0032 36.1 16.6 77 348-429 192-268 (993)
473 smart00036 CNH Domain found in 70.2 1.3E+02 0.0029 30.8 24.8 202 353-563 41-274 (302)
474 PRK14131 N-acetylneuraminic ac 69.8 1.6E+02 0.0034 31.3 20.1 38 418-456 190-230 (376)
475 PF12768 Rax2: Cortical protei 69.7 1.1E+02 0.0025 30.9 13.4 116 417-537 16-144 (281)
476 PF07250 Glyoxal_oxid_N: Glyox 68.8 52 0.0011 32.5 10.5 133 378-512 49-194 (243)
477 KOG1900 Nuclear pore complex, 68.7 44 0.00094 40.4 11.3 145 371-518 95-273 (1311)
478 TIGR03606 non_repeat_PQQ dehyd 68.2 1.5E+02 0.0032 32.4 14.6 114 435-550 28-166 (454)
479 PF11715 Nup160: Nucleoporin N 68.0 15 0.00033 41.4 7.7 80 212-291 157-259 (547)
480 PF15477 SMAP: Small acidic pr 65.3 4 8.6E-05 31.4 1.6 16 51-66 10-25 (69)
481 KOG3616 Selective LIM binding 64.9 12 0.00027 41.7 5.7 78 385-465 5-82 (1636)
482 COG4257 Vgb Streptogramin lyas 64.6 1.6E+02 0.0034 29.5 16.9 185 356-561 63-264 (353)
483 KOG4460 Nuclear pore complex, 64.0 2.3E+02 0.0049 31.1 19.1 37 355-391 166-206 (741)
484 COG4590 ABC-type uncharacteriz 61.1 45 0.00096 35.4 8.6 163 393-563 219-390 (733)
485 COG5290 IkappaB kinase complex 61.0 1.6E+02 0.0034 33.9 13.0 103 395-507 247-357 (1243)
486 PF12657 TFIIIC_delta: Transcr 60.5 36 0.00078 31.6 7.5 32 437-468 86-123 (173)
487 COG5290 IkappaB kinase complex 60.1 3E+02 0.0065 31.8 14.9 95 439-541 249-348 (1243)
488 KOG1896 mRNA cleavage and poly 60.1 3.9E+02 0.0085 32.6 17.6 174 332-514 1006-1210(1366)
489 PF10395 Utp8: Utp8 family; I 60.1 3.1E+02 0.0067 31.4 16.4 166 250-424 129-304 (670)
490 PF11715 Nup160: Nucleoporin N 59.6 27 0.00058 39.4 7.6 66 498-563 157-252 (547)
491 TIGR03118 PEPCTERM_chp_1 conse 59.5 2.1E+02 0.0046 29.2 22.3 147 367-520 102-282 (336)
492 PF13449 Phytase-like: Esteras 59.1 2.3E+02 0.0049 29.5 18.2 101 354-456 19-166 (326)
493 PF08801 Nucleoporin_N: Nup133 58.1 2.5E+02 0.0055 30.3 14.7 192 203-477 26-230 (422)
494 TIGR02276 beta_rpt_yvtn 40-res 57.9 39 0.00084 22.4 5.4 39 364-402 1-41 (42)
495 PF07676 PD40: WD40-like Beta 57.8 35 0.00077 22.3 5.1 34 244-277 2-38 (39)
496 PLN02153 epithiospecifier prot 57.2 2.5E+02 0.0053 29.3 20.9 101 367-471 88-230 (341)
497 TIGR02276 beta_rpt_yvtn 40-res 57.1 35 0.00077 22.6 5.1 39 406-444 2-41 (42)
498 TIGR03547 muta_rot_YjhT mutatr 56.7 2.5E+02 0.0054 29.2 18.3 52 406-457 63-128 (346)
499 PRK14131 N-acetylneuraminic ac 56.1 2.7E+02 0.0059 29.5 18.7 90 367-457 42-149 (376)
500 smart00036 CNH Domain found in 51.7 2.8E+02 0.0062 28.4 17.5 149 408-559 14-183 (302)
No 1
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-74 Score=611.94 Aligned_cols=649 Identities=43% Similarity=0.725 Sum_probs=471.4
Q ss_pred CCCcccccccccccccCCCCCCCCCCcCCCCCCccccccccCCCcHHHHHHHHHhhhcCCC-CCCCCCCCCCC-CCCCCc
Q 005352 6 EDEECPFFDASEDIASISGATSDSNDMFDSYYGFNSEVWVRTPKSVKERRSKFLDWMEAGL-DGLSGNKPVDM-GSFGGE 83 (701)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~ 83 (701)
+||||+||||.|++++ . |+||+..|+||.|||+|||++|||+. +.+.+..+... .....+
T Consensus 6 ~ee~~~f~~~~~~~~~----------------~--~~~w~~~p~sv~err~~~l~~mgls~~~~~~~~~~~~~~~~~~~~ 67 (712)
T KOG0283|consen 6 EEEEDRFFDASERVSP----------------D--YDLWTSSPGSVSERRRKFLNGMGLSSKKTLSRSETVDRLSSSSVE 67 (712)
T ss_pred ccccccccccccccCc----------------c--hhhhhcCccchhHHHHHHhhhhccccccccccccccccccccccc
Confidence 3555999999999972 1 99999999999999999999999996 34444333211 000001
Q ss_pred cccccccccccccccccccccccccccccccCCCCCCCCCCCCCcccCcCCCcceEEeccCCC-Cc-----cccccceE-
Q 005352 84 DDGLCKSSGAVLRIAGIEEEFRSIRSVRSGRSNDNVELPEENFPCKDGNYDREMACDVDQMGP-DG-----QISNCREI- 156 (701)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~- 156 (701)
+... .++-.+.++...+ ++..++.++ ..+- ..-..+.. .+.+.+++|++..+ ++ +++++..+
T Consensus 68 ~~~~------~~~~~~v~~~~~~-~~~~~~~~s-~~~~-~~~~~~~~--~~~~~e~~v~e~~~~~~~~~~sd~~~~~~~~ 136 (712)
T KOG0283|consen 68 SNVD------ESNHNSVEDTDSE-QCRPSSSSS-KSRV-SQSSSSIE--LDTGDEFSVSENPEDGSVNRLSDVGTGASST 136 (712)
T ss_pred cccc------ccccccccccccc-cCCcccccc-cccc-ccccccee--ecccceeeEeeccCccccccccCCCcccccc
Confidence 1000 0000011111111 111110000 0000 00000111 35555666677644 22 45554444
Q ss_pred --EEEEecccchhhHHHHHhhccc-----------------hhhHHHHHHhHHhhhccceeeecccCcce--eeecCcc-
Q 005352 157 --YLENTSELLPLMDEIVEKESSA-----------------AGKAERVKKRWFSRLRSLACVVDKQGEGE--RVRLNEE- 214 (701)
Q Consensus 157 --~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~- 214 (701)
+++...+..+.++++++++... ..+-+|..+.|++.++.+++......+.. ....+..
T Consensus 137 ~e~~e~~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~~~r~~~~~l~~~k~~~~~~s~~~~~~~~~~~~d~~~ 216 (712)
T KOG0283|consen 137 LEELESSPGESSRVKELGDRENADLDEMLTKYNDDVSGSVLLRKSKRYGKRWLKSLKVVAHSLSSLSENRRSRFDSDSSS 216 (712)
T ss_pred cccccCCcCcccchhhhhhhcccccchhhcccccccccccccchhhhhhhhhhhhccccccccccccccccccccccchh
Confidence 6777777788888887755432 12245556668899888777665331111 1000000
Q ss_pred ----cc--ccc--------cccceEEEEEccCccchhhhcccCceec-cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 005352 215 ----DA--MFC--------SKVQRVKVYHCKKRSKELSALYKGQEIQ-AHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 215 ----~~--~~~--------~~d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 279 (701)
++ ..+ .....+++....+..+++..++..|+++ +|++.|++|+||+||+|||+||+||.|+||.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkV 296 (712)
T KOG0283|consen 217 QFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKV 296 (712)
T ss_pred cccccccccccccccccccCCcceEEecccCCCcccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEE
Confidence 00 111 1126789999999999999999999999 99999999999999999999999999999999
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeecc-ccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK-EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
...+. .........++++..+....+.++.... .........+......++.++.+.+.+.++|++.|.||.+.|+
T Consensus 297 ie~e~---~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DIL 373 (712)
T KOG0283|consen 297 IESER---MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADIL 373 (712)
T ss_pred eccch---hcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhhe
Confidence 88654 3344455566666655555555554444 2222333344455555589999999999999999999999999
Q ss_pred EEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc
Q 005352 359 DLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (701)
Q Consensus 359 ~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 438 (701)
+|.|+.+++|+++|+|+||+||++...+|++.|.|.+.|+|++|+|.|++||++|+.||+||||++...+++.|.+.+..
T Consensus 374 DlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~l 453 (712)
T KOG0283|consen 374 DLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDL 453 (712)
T ss_pred ecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC--
Q 005352 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG-- 516 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~-- 516 (701)
|+++||.|+|++.++|+.+|.|++|++...++.....+..+..++....+|++++|.|.+...+++.+.|.+|||||+
T Consensus 454 ITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 454 ITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred heeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 999999999999999999999999999999999999999988887777799999999988888999999999999999
Q ss_pred CccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC-CCccccccccccccccC-CceEEecCCCCCCC
Q 005352 517 PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE-PAHDQAKTIRSLERFTT-NASIAIPWCGLKCG 594 (701)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~-~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~ 594 (701)
..+..+|++..........+|+.||++|++|++|..||||++..... ......+.+++++.|.+ ..+++++|.|....
T Consensus 534 ~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~~~~~~~~~~~~~s~e~f~s~~vs~a~~w~g~~~~ 613 (712)
T KOG0283|consen 534 KDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFNSEASHKKTKSIRSYEHFSSVDVSVAIPWPGFHAH 613 (712)
T ss_pred hhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCccccccccccccccccccccccccccccccccccc
Confidence 78899999988888899999999999999999999999999876543 23455778999999999 99999999998765
Q ss_pred CCCCCCccccCCCCCCCccccCCCccccCccccccC-----CCCcccCCCCccCCCCccccccccchhhhhhhhhccccc
Q 005352 595 NAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFES-----FPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLC 669 (701)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s-----~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (701)
+............ ..| ...+...+ .++...+|+++++...... ......++++..+.+..
T Consensus 614 n~ss~~p~~~~~~-------~~~-----~~~~~~s~~~~~~~~~~s~t~~e~~~~~s~~~---~~~~~~~~~~~~S~~~~ 678 (712)
T KOG0283|consen 614 NPSSNLPPLIKAA-------LRP-----VNEFKLSSPMRSLNSRGSATWPEEKLLDSPGA---SASSRSSIKFLMSGCQR 678 (712)
T ss_pred cccccCCCCcccc-------cCc-----ccccccCCccccccccccccCcccccccccCc---ccccccccccccCCCcc
Confidence 4211111110000 111 11122111 2367789999988754321 12233334455555543
Q ss_pred cc--ccCCCccEEEEecCCCeEeEEeecCCCcCC
Q 005352 670 TT--SSHAWGLVIVTAGWDGRIRSFLNYGLPIPV 701 (701)
Q Consensus 670 ~~--~~~~~g~~ivTgg~DG~Irvw~~~g~p~~~ 701 (701)
.. .+++||++|+||+++|.||+|+|||||+++
T Consensus 679 ~~~~~~~~wg~vivTs~~~g~Ir~~~n~glp~~~ 712 (712)
T KOG0283|consen 679 SSSSSPHAWGMVIVTSTLDGQIRCFQNYGLPRRV 712 (712)
T ss_pred ccccccCCCcceeeeccccceEEEEEecCCCCCC
Confidence 32 257899999999999999999999999985
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-44 Score=349.71 Aligned_cols=351 Identities=20% Similarity=0.282 Sum_probs=288.2
Q ss_pred cccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeE
Q 005352 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (701)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 299 (701)
..+....||.-..-.+......+...+.||.++|.|++|+|+|.+||||+.|.++|+||+.+.
T Consensus 85 te~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te----------------- 147 (480)
T KOG0271|consen 85 TEDVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE----------------- 147 (480)
T ss_pred hhheeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-----------------
Confidence 334445666543322223334556678999999999999999999999999999999999875
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEE
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVR 378 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~ 378 (701)
.|+++.++|...|.|++|+||+ .|++|+.||+|+
T Consensus 148 ---------------------------------------------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 148 ---------------------------------------------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred ---------------------------------------------CcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 5778889999999999999999 999999999999
Q ss_pred EEECCCCeeeee-ec-CCCCeEEEEEeeC----CCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeE
Q 005352 379 LWRVGNDHCLRV-FP-HSNYVTCVHFNPV----DDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGG 451 (701)
Q Consensus 379 iWd~~~~~~~~~-~~-h~~~V~~l~f~p~----~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l 451 (701)
+||..+++++.. +. |...|++++|.|. ...+|++++.||.|+|||+..++++ ...+|..+|+|++|--+| +|
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-li 261 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LI 261 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eE
Confidence 999999987654 33 9999999999873 4568999999999999999998877 566899999999998655 89
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe-----------------------------------c
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL-----------------------------------P 496 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-----------------------------------p 496 (701)
++|+.|++|++|+...+.+.. ....|...|+.++++ +
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r--------~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~ 333 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCR--------ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLK 333 (480)
T ss_pred EecCCCceEEEEEccchhHHH--------hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhc
Confidence 999999999999998865432 234566667776665 1
Q ss_pred CCCCEEEEEECCCcEEEEeCCccc-eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcccccccccc
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVI-GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSL 575 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~ 575 (701)
+.+..+++|+.|.++.+|+..... ..-+..+|..-|+.+.||||++|||+++-|..|++|+-.+++.... +
T Consensus 334 ~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~las--------f 405 (480)
T KOG0271|consen 334 DSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLAS--------F 405 (480)
T ss_pred cCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhh--------h
Confidence 234569999999999999976544 3334456999999999999999999999999999999999883211 1
Q ss_pred ccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccc
Q 005352 576 ERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASAL 655 (701)
Q Consensus 576 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~ 655 (701)
..+-..+..++|+.+ .+.++++|.|.++++|+..+......+++|
T Consensus 406 ----------------------------RGHv~~VYqvawsaD----sRLlVS~SkDsTLKvw~V~tkKl~~DLpGh--- 450 (480)
T KOG0271|consen 406 ----------------------------RGHVAAVYQVAWSAD----SRLLVSGSKDSTLKVWDVRTKKLKQDLPGH--- 450 (480)
T ss_pred ----------------------------hhccceeEEEEeccC----ccEEEEcCCCceEEEEEeeeeeecccCCCC---
Confidence 001224555667776 678899999999999999999988999988
Q ss_pred hhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 656 HKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
..+|+++.++++ |..+++||.|..+|+|.
T Consensus 451 --------~DEVf~vDwspD-G~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 451 --------ADEVFAVDWSPD-GQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------CceEEEEEecCC-CceeecCCCceEEEeec
Confidence 579999999999 99999999999999996
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-41 Score=324.61 Aligned_cols=322 Identities=20% Similarity=0.315 Sum_probs=268.5
Q ss_pred ecccCcceeeec--CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 200 VDKQGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 200 ~~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
..|.+.+.++++ .+..+++|+.|.++|+||+..... ..+.++|...|.|++|+|||+.||+|+.||.|++|
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-------~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-------LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-------ceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 356666666554 557899999999999999765432 23578899999999999999999999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
|..+++. ....|.+|+..|
T Consensus 185 dpktg~~-------------------------------------------------------------~g~~l~gH~K~I 203 (480)
T KOG0271|consen 185 DPKTGQQ-------------------------------------------------------------IGRALRGHKKWI 203 (480)
T ss_pred cCCCCCc-------------------------------------------------------------ccccccCcccce
Confidence 9988862 234578999999
Q ss_pred EEEEEecC-----C-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 358 LDLSWSKN-----N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 358 ~~l~~s~~-----~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
++|+|.|- . +|++++.||+|+|||+..+.++..+. |+.+|+|+.|- ...+|++|+.|++|++|+...+.+.
T Consensus 204 t~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~ 281 (480)
T KOG0271|consen 204 TALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLC 281 (480)
T ss_pred eEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHH
Confidence 99999873 2 89999999999999999999998876 99999999996 4679999999999999999998877
Q ss_pred -EEecCCCcEEEEEEe-----------eCCC-------------------------eEEEEecCCcEEEEECCCCeeeee
Q 005352 431 -DWVDIRQIVTAVCYR-----------PDGQ-------------------------GGIVGSMMGDCRFYNVSDNHLELD 473 (701)
Q Consensus 431 -~~~~~~~~i~~i~~s-----------p~g~-------------------------~l~~gs~dg~v~i~d~~~~~~~~~ 473 (701)
.+.+|...|+.++.+ |.++ .|++|+.|.++.+|+....+.
T Consensus 282 r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk--- 358 (480)
T KOG0271|consen 282 RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK--- 358 (480)
T ss_pred HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc---
Confidence 566788888888776 3333 499999999999999865542
Q ss_pred eeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcE
Q 005352 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNV 553 (701)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I 553 (701)
.......|..-|+.+.|+| ++.++++++.|..|++||.++........+|-..|+.++|+.|.++|++|+.|.++
T Consensus 359 ----pi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTL 433 (480)
T KOG0271|consen 359 ----PITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTL 433 (480)
T ss_pred ----chhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceE
Confidence 2233566778899999999 89999999999999999999887776666699999999999999999999999999
Q ss_pred EEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCC
Q 005352 554 YMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPK 633 (701)
Q Consensus 554 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~ 633 (701)
++|++.+.+... .. ..+.+.+..+-|+|+ ++..++++.|+
T Consensus 434 Kvw~V~tkKl~~---------------------------------DL---pGh~DEVf~vDwspD----G~rV~sggkdk 473 (480)
T KOG0271|consen 434 KVWDVRTKKLKQ---------------------------------DL---PGHADEVFAVDWSPD----GQRVASGGKDK 473 (480)
T ss_pred EEEEeeeeeecc---------------------------------cC---CCCCceEEEEEecCC----CceeecCCCce
Confidence 999999887321 00 112445566667887 78889999999
Q ss_pred cccCCC
Q 005352 634 GCATWP 639 (701)
Q Consensus 634 ~~~~W~ 639 (701)
.+++|.
T Consensus 474 v~~lw~ 479 (480)
T KOG0271|consen 474 VLRLWR 479 (480)
T ss_pred EEEeec
Confidence 999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.5e-40 Score=320.52 Aligned_cols=278 Identities=21% Similarity=0.349 Sum_probs=248.2
Q ss_pred ccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC--CCEEEEEeCCCcEEEEEe
Q 005352 202 KQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD--GQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~I~iWd~ 279 (701)
++-..+.++.++..+++|+-+|.++||.... ....+.|.+|.+.|.++.|+|. +..||||+.||++++|++
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~-------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQ-------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCC-------cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 3334567888889999999999999997543 2344679999999999999996 668999999999999998
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
.+. .++..+.+|...|..
T Consensus 249 ~~e--------------------------------------------------------------~~l~~l~gH~~RVs~ 266 (459)
T KOG0272|consen 249 SQE--------------------------------------------------------------TPLQDLEGHLARVSR 266 (459)
T ss_pred CCC--------------------------------------------------------------cchhhhhcchhhhee
Confidence 765 456778899999999
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCC
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIR 436 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~ 436 (701)
++|+|+| +|+|++.|.+-++||++++..+.... |...|.+++|+| +|.++++|+.|..-+|||+++++++ .+.+|.
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~ 345 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI 345 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccc
Confidence 9999999 99999999999999999987665554 999999999999 9999999999999999999999887 455789
Q ss_pred CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
.+|.+|.|+|+|..|++|+.|++++|||++...... ....|..-|+.+.|.|..+.+|++++.|++++||..
T Consensus 346 k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly--------~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 346 KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY--------TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred cceeeEeECCCceEEeecCCCCcEEEeeecccccce--------ecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 999999999999999999999999999999876532 245577889999999988999999999999999999
Q ss_pred CccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 517 PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
.+....-...+|.+.|.++.+++|+++|+|++.|.++++|.
T Consensus 418 ~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 418 RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 98887777778999999999999999999999999999996
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.6e-39 Score=313.91 Aligned_cols=242 Identities=21% Similarity=0.336 Sum_probs=221.3
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
|-+.+|..+.|++|+..||||+.+|.++||+..+.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--------------------------------------------- 207 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--------------------------------------------- 207 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc---------------------------------------------
Confidence 46789999999999999999999999999998765
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC--C-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEe
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFN 403 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~ 403 (701)
..+++|.||...|.++.|+|. + .++||+.||++++|++.+..++..+. |...|..++|+
T Consensus 208 -----------------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafH 270 (459)
T KOG0272|consen 208 -----------------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFH 270 (459)
T ss_pred -----------------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeec
Confidence 346788999999999999997 4 99999999999999999998888886 89999999999
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc
Q 005352 404 PVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482 (701)
Q Consensus 404 p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~ 482 (701)
| +|++|++++.|.+-++||++++..+ ...+|...|.+++|.|||..+++|+.|..-+|||++++..++. .
T Consensus 271 P-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~--------L 341 (459)
T KOG0272|consen 271 P-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF--------L 341 (459)
T ss_pred C-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE--------e
Confidence 9 9999999999999999999998755 6678999999999999999999999999999999999987643 2
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCC
Q 005352 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTS-DGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 483 ~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
..|...|.++.|+| ++..|++|+.|++++|||++.....+....|..-|+.++|+| .|.+|+|++.|++++||.-.+.
T Consensus 342 ~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 342 AGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW 420 (459)
T ss_pred cccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence 34778899999999 899999999999999999998888888888999999999998 7899999999999999985443
No 6
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-36 Score=314.88 Aligned_cols=294 Identities=20% Similarity=0.329 Sum_probs=251.6
Q ss_pred EEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC
Q 005352 348 HEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~ 427 (701)
..+.||...|..++++.+..++..+..+.|++|+..+.+|++++... ++.+..|.| .++++++|...|.+.+||+.+.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVP-GDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecC-CCceEEEeccCCceEEEEeehh
Confidence 45679999999999999996666666789999999999999999855 899999999 9999999999999999999998
Q ss_pred cEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee---eeeeEEeec-ccCCCCCCeeEEEEecCCCCEE
Q 005352 428 HVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE---LDAEICVHS-KKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 428 ~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~---~~~~~~~~~-~~~~~~~~i~~l~~~p~~~~~l 502 (701)
..+. ...|.+.|+.++.+||+..+++|+.|.+|++||+.--.-. ....+.+.. ..-.....|.++.++| ++.+|
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~L 523 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLL 523 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEE
Confidence 8774 4468999999999999999999999999999997421110 000011111 1122346799999999 89999
Q ss_pred EEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCc
Q 005352 503 MVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNA 582 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (701)
+++--|++|+||-+.+........+|.-+|.++.++||+++|+|||.|.+|+||-++=|.
T Consensus 524 aVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD-------------------- 583 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD-------------------- 583 (888)
T ss_pred EEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch--------------------
Confidence 999999999999999988888888899999999999999999999999999999876554
Q ss_pred eEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhh
Q 005352 583 SIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKF 662 (701)
Q Consensus 583 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 662 (701)
++++...| +++++.+.|.|. .+.|++++.|+.++.|+.++..+++.+.+|
T Consensus 584 -------------CHKS~fAH---dDSvm~V~F~P~----~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H---------- 633 (888)
T KOG0306|consen 584 -------------CHKSFFAH---DDSVMSVQFLPK----THLFFTCGKDGKVKQWDGEKFEEIQKLDGH---------- 633 (888)
T ss_pred -------------hhhhhhcc---cCceeEEEEccc----ceeEEEecCcceEEeechhhhhhheeeccc----------
Confidence 55554444 678899999996 889999999999999999999999999888
Q ss_pred hhcccccccccCCCccEEEEecCCCeEeEEeecC
Q 005352 663 LKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYG 696 (701)
Q Consensus 663 ~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~~g 696 (701)
..++||++.+++ |.++||++.|..||+|-...
T Consensus 634 -~~ev~cLav~~~-G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 634 -HSEVWCLAVSPN-GSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred -hheeeeeEEcCC-CCeEEeccCCceeEeeeccC
Confidence 579999999999 99999999999999997544
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=284.64 Aligned_cols=291 Identities=19% Similarity=0.309 Sum_probs=246.7
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.|+||.+.|.+|.|++|.++|++++.||.+.|||.-+..+.+.++++..-+....+.+.... .
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~----------------V 112 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNF----------------V 112 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCe----------------E
Confidence 568999999999999999999999999999999999998888877766544433344333221 1
Q ss_pred eeecCCccEEEcCCccc--cccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEE
Q 005352 324 LRRTSESACVVFPPKVF--RILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l 400 (701)
..+..+..+.+|+.+.- +..-+....+.+|++-+.|+.|-++++|+|+|.|.+..+||+++++.+..|. |.+.|.++
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sl 192 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSL 192 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEE
Confidence 12334455555555533 2222455678999999999999998899999999999999999999999997 99999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
.+.|.+++.|++|+-|++.++||++.+.++ .+.+|...|++++|.|+|..|++|+.|+++++||++..+......
T Consensus 193 sl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys---- 268 (343)
T KOG0286|consen 193 SLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS---- 268 (343)
T ss_pred ecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec----
Confidence 999989999999999999999999999888 456789999999999999999999999999999999876543322
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
......+|++++|+. .+.+|++|..|..+.+||.-.....-...+|...|.++..+|||..++||+.|..++||.
T Consensus 269 --~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 269 --HDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --cCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 334457899999999 899999999999999999887777777778999999999999999999999999999994
No 8
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-36 Score=313.85 Aligned_cols=410 Identities=18% Similarity=0.211 Sum_probs=308.8
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceecc-CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQA-HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~ 285 (701)
.++.+++..+++++..+.+++|++... . ..+..++ |++||..|+|+|.|.+|++||.|+.|+|||+..+.+.
T Consensus 68 ~~l~~d~~~L~~a~rs~llrv~~L~tg--k-----~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 68 LALTPDEEVLVTASRSQLLRVWSLPTG--K-----LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred eeecCCccEEEEeeccceEEEEEcccc--h-----HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 456677888899999999999988654 2 2234555 9999999999999999999999999999999999999
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
+.+..+...+..+.|.++....+... +..+....+|+...-. ..++.+..|...|++++++++
T Consensus 141 h~fkG~gGvVssl~F~~~~~~~lL~s--------------g~~D~~v~vwnl~~~~---tcl~~~~~H~S~vtsL~~~~d 203 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHPHWNRWLLAS--------------GATDGTVRVWNLNDKR---TCLHTMILHKSAVTSLAFSED 203 (775)
T ss_pred EEecCCCceEEEEEeCCccchhheee--------------cCCCceEEEEEcccCc---hHHHHHHhhhhheeeeeeccC
Confidence 99998888777777766654422111 1122222222221111 135566778888888888887
Q ss_pred C-eEEEEECCCcEEEEECC-------------------------------------------------------------
Q 005352 366 N-YLLSASIDKTVRLWRVG------------------------------------------------------------- 383 (701)
Q Consensus 366 ~-~l~s~s~dg~I~iWd~~------------------------------------------------------------- 383 (701)
+ .+++++.|..+.|||+.
T Consensus 204 ~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e 283 (775)
T KOG0319|consen 204 SLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEE 283 (775)
T ss_pred CceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchh
Confidence 7 77788888888888761
Q ss_pred -----------------------------------------------------------------------CCeeeeeec
Q 005352 384 -----------------------------------------------------------------------NDHCLRVFP 392 (701)
Q Consensus 384 -----------------------------------------------------------------------~~~~~~~~~ 392 (701)
+..|.-.-.
T Consensus 284 ~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~G 363 (775)
T KOG0319|consen 284 IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPG 363 (775)
T ss_pred hhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeC
Confidence 001110112
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-----EEecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECC
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-----DWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVS 466 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-----~~~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~ 466 (701)
|...|.++.... .+.+|++|+.|.++++|.++++... ...+|...|.+++++..+ .+|++++.|+++++|++.
T Consensus 364 H~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 364 HTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred chhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
Confidence 556666666333 5679999999999999988544322 456789999999997754 588999999999999998
Q ss_pred CCeeeee-eeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEE
Q 005352 467 DNHLELD-AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIV 545 (701)
Q Consensus 467 ~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 545 (701)
..+.... ..+........|...|++++++| +..++++||.|.+.+||++.+....-...+|...|.++.|+|..+.++
T Consensus 443 ~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~la 521 (775)
T KOG0319|consen 443 KSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLA 521 (775)
T ss_pred CcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeE
Confidence 7332211 11222334567889999999999 789999999999999999997776666677999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcc
Q 005352 546 SAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQE 625 (701)
Q Consensus 546 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~ 625 (701)
|+|.|++|+||.+.+.. .++.++.+.+ .+....|-. .+..
T Consensus 522 T~SgD~TvKIW~is~fS--------ClkT~eGH~~----------------------------aVlra~F~~----~~~q 561 (775)
T KOG0319|consen 522 TCSGDKTVKIWSISTFS--------CLKTFEGHTS----------------------------AVLRASFIR----NGKQ 561 (775)
T ss_pred eccCCceEEEEEeccce--------eeeeecCccc----------------------------eeEeeeeee----CCcE
Confidence 99999999999999886 2222222211 122223333 3678
Q ss_pred ccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 626 YVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 626 ~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
+++++.||.+++|+..+.+++.++.+| .+.+|+++.++. +.+++|||.||.|-+|.-
T Consensus 562 liS~~adGliKlWnikt~eC~~tlD~H-----------~DrvWaL~~~~~-~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 562 LISAGADGLIKLWNIKTNECEMTLDAH-----------NDRVWALSVSPL-LDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred EEeccCCCcEEEEeccchhhhhhhhhc-----------cceeEEEeecCc-cceeEecCCCeEEEEeec
Confidence 899999999999999999999999888 689999999999 889999999999999963
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=271.42 Aligned_cols=278 Identities=20% Similarity=0.358 Sum_probs=240.8
Q ss_pred ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCC
Q 005352 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 294 (701)
.|++++.|.+||+|+.. .-.+..+++...+.|+.+...|++++||+|+. ..||+||+.++..
T Consensus 12 iLvsA~YDhTIRfWqa~-------tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np---------- 73 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQAL-------TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP---------- 73 (311)
T ss_pred EEEeccCcceeeeeehh-------cCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC----------
Confidence 56779999999999643 33445678878899999999999999999997 5799999988741
Q ss_pred CceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC
Q 005352 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI 373 (701)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~ 373 (701)
.|+.+|.+|+..|+.+.|..+| .++||+.
T Consensus 74 --------------------------------------------------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse 103 (311)
T KOG0315|consen 74 --------------------------------------------------NPVATFEGHTKNVTAVGFQCDGRWMYTGSE 103 (311)
T ss_pred --------------------------------------------------CceeEEeccCCceEEEEEeecCeEEEecCC
Confidence 5788999999999999999999 9999999
Q ss_pred CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE--ecCCCcEEEEEEeeCCCeE
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW--VDIRQIVTAVCYRPDGQGG 451 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~--~~~~~~i~~i~~sp~g~~l 451 (701)
||+++|||++...+.+.|.|..+|+++..+| +...|++|..+|.|++||+....+... ......|.++...|+|.++
T Consensus 104 Dgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml 182 (311)
T KOG0315|consen 104 DGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSML 182 (311)
T ss_pred CceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEE
Confidence 9999999999999999999999999999999 888999999999999999988755532 2345689999999999999
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc-ceeeecccCCC
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-IGKYKGLRRSG 530 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~ 530 (701)
+.+...|++++|++-.... ..++....+...|...|..+.++| +.++|++++.|.+++||+..+. ........|..
T Consensus 183 ~a~nnkG~cyvW~l~~~~~--~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r 259 (311)
T KOG0315|consen 183 AAANNKGNCYVWRLLNHQT--ASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR 259 (311)
T ss_pred EEecCCccEEEEEccCCCc--cccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCc
Confidence 9999999999999987432 223344455677888999999999 8999999999999999999877 33344455889
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCC
Q 005352 531 NQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEP 564 (701)
Q Consensus 531 ~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~ 564 (701)
.+..++||.||.||+||+.|+.+++|++..+++.
T Consensus 260 WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 260 WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred eEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 9999999999999999999999999999998853
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-34 Score=265.72 Aligned_cols=250 Identities=21% Similarity=0.343 Sum_probs=217.0
Q ss_pred ceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
..+.+|++.|+.++..+. ...|++++.|.++.+|++.....
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~-------------------------------------- 50 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI-------------------------------------- 50 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc--------------------------------------
Confidence 468899999999999886 56899999999999999876420
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l 400 (701)
..+.+++.|.||...|..+..++++ +.++++.|+++++||+.+++..+.|. |...|.++
T Consensus 51 -------------------~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsv 111 (315)
T KOG0279|consen 51 -------------------KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSV 111 (315)
T ss_pred -------------------ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEE
Confidence 1126788899999999999999999 99999999999999999998888876 99999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC--CCcEEEEEEeeC--CCeEEEEecCCcEEEEECCCCeeeeeeeE
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI--RQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~i~~i~~sp~--g~~l~~gs~dg~v~i~d~~~~~~~~~~~~ 476 (701)
+|+| ++..+++|+.|.+|++|++........... ++.|++++|+|+ ..+|+.++.|++|++||+++.++..
T Consensus 112 a~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~---- 186 (315)
T KOG0279|consen 112 AFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT---- 186 (315)
T ss_pred EecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh----
Confidence 9999 999999999999999999988776665554 789999999998 6799999999999999999866432
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
....|...++.++++| |+.+.++|+.||.+.+||++.....+.. .+...|.+++|+|+.-.|+.+. +..|+||
T Consensus 187 ----~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIw 259 (315)
T KOG0279|consen 187 ----TFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIW 259 (315)
T ss_pred ----ccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeecc-CCceEEE
Confidence 3456778899999999 8999999999999999999988775554 4889999999999976666554 5569999
Q ss_pred eCCCCC
Q 005352 557 NCIGHE 562 (701)
Q Consensus 557 d~~~~~ 562 (701)
|+.++.
T Consensus 260 dl~~~~ 265 (315)
T KOG0279|consen 260 DLESKA 265 (315)
T ss_pred eccchh
Confidence 998876
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-34 Score=266.99 Aligned_cols=284 Identities=20% Similarity=0.391 Sum_probs=230.8
Q ss_pred cccCcceeeec---CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 201 DKQGEGERVRL---NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 201 ~~~~~~~~~~~---~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
.|.+++..++. +.+.++.+++|..+.+|++......+- ...+.+.||.-.|..+..++||++.++++.|+++++|
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--ceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence 45666655433 345667799999999999977644332 3335688999999999999999999999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
|+.+++ +.+.|.||...|
T Consensus 91 Dl~~g~--------------------------------------------------------------~t~~f~GH~~dV 108 (315)
T KOG0279|consen 91 DLATGE--------------------------------------------------------------STRRFVGHTKDV 108 (315)
T ss_pred EecCCc--------------------------------------------------------------EEEEEEecCCce
Confidence 999874 456778999999
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCC-CCEEEEEEcCCcEEEEeCCCCcEE-EE
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVD-DNYFISGSIDGKVRIWAVLSCHVV-DW 432 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~-~~~l~sgs~dg~v~iwd~~~~~~~-~~ 432 (701)
++++|++++ ++++|+.|++|++||+.......... +.+.|+|+.|+|.. +.+|++++.|++|++||+++.+.. ..
T Consensus 109 lsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~ 188 (315)
T KOG0279|consen 109 LSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF 188 (315)
T ss_pred EEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc
Confidence 999999999 99999999999999987665544444 37899999999932 789999999999999999999877 56
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
.+|.+.++.++++|||...++|+.||.+.+||++.++..+ ...+...|.+++|+| + .+.++...+..|+
T Consensus 189 ~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly---------sl~a~~~v~sl~fsp-n-rywL~~at~~sIk 257 (315)
T KOG0279|consen 189 IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY---------SLEAFDIVNSLCFSP-N-RYWLCAATATSIK 257 (315)
T ss_pred ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE---------eccCCCeEeeEEecC-C-ceeEeeccCCceE
Confidence 7899999999999999999999999999999999887643 234557899999999 3 5555556666799
Q ss_pred EEeCCccceee------ecc---cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 513 ILQGPNVIGKY------KGL---RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 513 iwd~~~~~~~~------~~~---~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
|||+....... .+. .......+++|++||..|++|-.|+.|++|.+.
T Consensus 258 Iwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 258 IWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99987433222 111 123345788999999999999999999999874
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-33 Score=282.58 Aligned_cols=412 Identities=16% Similarity=0.216 Sum_probs=294.2
Q ss_pred cCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC--C--CcEEEEE
Q 005352 203 QGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD--D--GVVRLWQ 278 (701)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~--D--g~I~iWd 278 (701)
+..+.++++++.+++.|...|.||||+....... ...+++.-.++|..|+|++++++|+..|+ + |.+.+||
T Consensus 61 ~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hi-----LKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D 135 (603)
T KOG0318|consen 61 QVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHI-----LKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD 135 (603)
T ss_pred eeEEEEeCCCceEEeecCCcCcEEEEeccCccee-----eeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec
Confidence 3345678889899999999999999997543322 23567778999999999999999988876 3 3455555
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
++..+-++..+... +....+.+.....+ ...+.+..+..|...-| +...++..|...|.
T Consensus 136 --SG~SvGei~GhSr~-------------ins~~~KpsRPfRi--~T~sdDn~v~ffeGPPF----KFk~s~r~HskFV~ 194 (603)
T KOG0318|consen 136 --SGNSVGEITGHSRR-------------INSVDFKPSRPFRI--ATGSDDNTVAFFEGPPF----KFKSSFREHSKFVN 194 (603)
T ss_pred --CCCccceeecccee-------------EeeeeccCCCceEE--EeccCCCeEEEeeCCCe----eeeeccccccccee
Confidence 45444444433322 12222222222211 12222333333333222 33456678999999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE---
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--- 430 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--- 430 (701)
|+.|+|+| ++++++.||+|.+||-.+++.+..+. |.+.|.+++|+| |...|++++.|.+++|||+.+.+++
T Consensus 195 ~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 195 CVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred eEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEe
Confidence 99999999 99999999999999999999999986 999999999999 9999999999999999998664322
Q ss_pred -----------------------------------------EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCe
Q 005352 431 -----------------------------------------DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (701)
Q Consensus 431 -----------------------------------------~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~ 469 (701)
...+|...|++++.+|++++|++|+.||.|.-|+...+.
T Consensus 274 ~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 274 PMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred ecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence 123467789999999999999999999999999986543
Q ss_pred eeee------e--------------------eEEe-------------------------------------------ec
Q 005352 470 LELD------A--------------------EICV-------------------------------------------HS 480 (701)
Q Consensus 470 ~~~~------~--------------------~~~~-------------------------------------------~~ 480 (701)
.-.. . .+.. +.
T Consensus 354 ~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~ 433 (603)
T KOG0318|consen 354 SDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQD 433 (603)
T ss_pred ccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEec
Confidence 2100 0 0000 00
Q ss_pred c----cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc--cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 481 K----KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 481 ~----~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
. .........+++++| ++..+++|+.|+.|+||.+.. .........|.+.|+++++|||+.|||++...+.|.
T Consensus 434 ~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv 512 (603)
T KOG0318|consen 434 QTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVV 512 (603)
T ss_pred CCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEE
Confidence 0 001112446778888 789999999999999999874 334445566999999999999999999999999999
Q ss_pred EEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCc
Q 005352 555 MWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKG 634 (701)
Q Consensus 555 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~ 634 (701)
+|++.+.+.. ...-.| +...+..++|+|+ ...++++|.|..
T Consensus 513 ~yd~~s~~~~--------~~~w~F---------------------------HtakI~~~aWsP~----n~~vATGSlDt~ 553 (603)
T KOG0318|consen 513 LYDVASREVK--------TNRWAF---------------------------HTAKINCVAWSPN----NKLVATGSLDTN 553 (603)
T ss_pred EEEcccCcee--------cceeee---------------------------eeeeEEEEEeCCC----ceEEEeccccce
Confidence 9999988731 111122 2334555666776 678899999999
Q ss_pred ccCCCCccCCCCcc-ccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 635 CATWPEEKLPALSQ-LSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 635 ~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
+-+|+.+++...-. ..+| ...++.+.+- + ...||++|.|..||+|+.
T Consensus 554 Viiysv~kP~~~i~iknAH-----------~~gVn~v~wl-d-e~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 554 VIIYSVKKPAKHIIIKNAH-----------LGGVNSVAWL-D-ESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EEEEEccChhhheEecccc-----------ccCceeEEEe-c-CceEEeccCcceeEEecc
Confidence 99999887765321 1223 2336655433 3 578999999999999974
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.1e-34 Score=266.80 Aligned_cols=289 Identities=17% Similarity=0.296 Sum_probs=252.1
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
+...+++||.+.|.++.|+++. +++++|.||.+.|||.-+...+..++ ....|..++|+| .++++++|+.|+...||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEE
Confidence 4557899999999999999999 99999999999999999988888887 567899999999 99999999999999999
Q ss_pred eCCCC--c----EE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 423 AVLSC--H----VV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 423 d~~~~--~----~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
++.+. + +. .+.+|.+-+.++.|.+| ..|++++.|.++.+||+++++.... ...|...|.++.+.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~--------f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQV--------FHGHTGDVMSLSLS 195 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEE--------ecCCcccEEEEecC
Confidence 99865 2 22 46678999999999885 5789999999999999999876543 34688999999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcccccccccc
Q 005352 496 PQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSL 575 (701)
Q Consensus 496 p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~ 575 (701)
|.+++.+++|+.|+..++||++.........+|...|++++|.|+|.-++||++|++.++||++...+... +
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~--------y 267 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV--------Y 267 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee--------e
Confidence 98899999999999999999998877777777999999999999999999999999999999998764211 0
Q ss_pred ccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccc
Q 005352 576 ERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASAL 655 (701)
Q Consensus 576 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~ 655 (701)
.+.....+++.+.||-. ++.++++..|.++.+|+.-+.+.+..+.+|
T Consensus 268 --------------------------s~~~~~~gitSv~FS~S----GRlLfagy~d~~c~vWDtlk~e~vg~L~GH--- 314 (343)
T KOG0286|consen 268 --------------------------SHDSIICGITSVAFSKS----GRLLFAGYDDFTCNVWDTLKGERVGVLAGH--- 314 (343)
T ss_pred --------------------------ccCcccCCceeEEEccc----ccEEEeeecCCceeEeeccccceEEEeecc---
Confidence 12223445777788775 788899999999999999999988888888
Q ss_pred hhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 656 HKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
.+.|.++..+++ |..++||+||-++|||.
T Consensus 315 --------eNRvScl~~s~D-G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 315 --------ENRVSCLGVSPD-GMAVATGSWDSTLRIWA 343 (343)
T ss_pred --------CCeeEEEEECCC-CcEEEecchhHheeecC
Confidence 578999999999 99999999999999994
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.7e-32 Score=281.52 Aligned_cols=406 Identities=16% Similarity=0.239 Sum_probs=313.9
Q ss_pred cccCcceeeecCcc-ccccccccceEEEEEccCccc-hhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRLNEE-DAMFCSKVQRVKVYHCKKRSK-ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~~~~-~~~~~~~d~~v~vw~~~~~~~-~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.-+..+.++.++++ .+++.+..+.+.||...+..+ ++......+++.+|-..|.++.|+.|.++|++|+.|.+++||.
T Consensus 94 ~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~ 173 (893)
T KOG0291|consen 94 NFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFG 173 (893)
T ss_pred eecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEE
Confidence 33444555555554 334456678999999876655 5666677788999999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+...+.+ ..+.+.+|++.|.
T Consensus 174 v~~~k~~------------------------------------------------------------~~~~l~gHkd~Vv 193 (893)
T KOG0291|consen 174 VDGNKNL------------------------------------------------------------FTYALNGHKDYVV 193 (893)
T ss_pred ecccccc------------------------------------------------------------ceEeccCCCcceE
Confidence 9765421 2345689999999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECC------------------------CCeee------e--e--ec-CCCCeEEEEE
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVG------------------------NDHCL------R--V--FP-HSNYVTCVHF 402 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~------------------------~~~~~------~--~--~~-h~~~V~~l~f 402 (701)
.+-|..+. .+++.+.||.+.+|... ..+.. . . +. ....|++.+|
T Consensus 194 acfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f 273 (893)
T KOG0291|consen 194 ACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF 273 (893)
T ss_pred EEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeec
Confidence 99999988 99999999999999775 11100 0 0 11 3378999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC-CcEEEEEEeeCCCeEEEEecC-CcEEEEECCCCeeeeeeeEEeec
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-QIVTAVCYRPDGQGGIVGSMM-GDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~i~~i~~sp~g~~l~~gs~d-g~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
++ ..+.|++|-..|...+|.+....++...... .+|..++|+..|.+|+.|+.. |.+-+|+.......+.
T Consensus 274 H~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK------- 345 (893)
T KOG0291|consen 274 HK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK------- 345 (893)
T ss_pred cC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee-------
Confidence 99 8899999999999999999999988766654 789999999999999998774 8999999987765432
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
...|...+++++++| |++++++|+.||+|+|||.....+......|...|+.+.|+..|+.|++++.||+|+.||+..
T Consensus 346 -QQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 346 -QQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred -ccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 455778899999999 899999999999999999999888777777999999999999999999999999999999987
Q ss_pred CCCCCccccc---cccccccccC-CceEEecCCC--CCCCCCCCCCccccCCC--CCCCccccCCCccccCccccccCCC
Q 005352 561 HEEPAHDQAK---TIRSLERFTT-NASIAIPWCG--LKCGNAEKEPQLHVSDD--DSPENLAFAPARFSLGQEYVFESFP 632 (701)
Q Consensus 561 ~~~~~~~~~~---~~~~~~~~~~-~~~~a~~~~~--~~~~~~~~~~~~~~~~~--~~~~~l~~sp~~~~~~~~~~~~s~d 632 (701)
...-...... ....+..-++ ..+.|-+.+. +..|..+.+..+..+.+ .++..++|+|+ +..++++|+|
T Consensus 424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~----~~~LaS~SWD 499 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD----GSLLASGSWD 499 (893)
T ss_pred cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc----cCeEEecccc
Confidence 6643322211 1222233333 2223333322 24566666655555544 45666789997 7788999999
Q ss_pred CcccCCCCccCC-CCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 633 KGCATWPEEKLP-ALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 633 ~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
++|++|+.-... .+-+++. ...+..++++++ |.-|+.+..||.|.+|+
T Consensus 500 kTVRiW~if~s~~~vEtl~i------------~sdvl~vsfrPd-G~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 500 KTVRIWDIFSSSGTVETLEI------------RSDVLAVSFRPD-GKELAVATLDGQITFFD 548 (893)
T ss_pred ceEEEEEeeccCceeeeEee------------ccceeEEEEcCC-CCeEEEEEecceEEEEE
Confidence 999999965442 1222221 246778899999 99999999999999997
No 15
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.2e-34 Score=285.75 Aligned_cols=289 Identities=22% Similarity=0.403 Sum_probs=242.3
Q ss_pred CceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 243 GQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 243 ~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
...+.+|+..|.++.|.| .+.+|++||.|+.|+||++....
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-------------------------------------- 248 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-------------------------------------- 248 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--------------------------------------
Confidence 346889999999999999 89999999999999999997643
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEE
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCV 400 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l 400 (701)
+.+++|.||..+|.+++|+++| .|++++.|++|++||+++|+++..|.....++|+
T Consensus 249 -----------------------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cv 305 (503)
T KOG0282|consen 249 -----------------------RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCV 305 (503)
T ss_pred -----------------------ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceee
Confidence 5677889999999999999999 9999999999999999999999999999999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
.|+|.+.+.|++|+.|+.|+.||++++++++.+ .|-+.|..+.|-++|+.+++.+.|+.++||+.+..-...
T Consensus 306 kf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik------- 378 (503)
T KOG0282|consen 306 KFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK------- 378 (503)
T ss_pred ecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch-------
Confidence 999955599999999999999999999988555 466899999999999999999999999999998754321
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC-----ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-----NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~-----~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
...........++..+| ++.++++-+.|+.|.++.+. +....|.++.-.+.-..+.|||||.+|++|+.||.++
T Consensus 379 ~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 379 NIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVN 457 (503)
T ss_pred hhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEE
Confidence 11222334577889999 78999999999999999865 4556677777778889999999999999999999999
Q ss_pred EEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCc
Q 005352 555 MWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKG 634 (701)
Q Consensus 555 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~ 634 (701)
+||.++-+.... + ..+....+.+ .|.|. ....+++++++|.
T Consensus 458 ~wdwkt~kl~~~--------l-kah~~~ci~v---------------------------~wHP~---e~Skvat~~w~G~ 498 (503)
T KOG0282|consen 458 FWDWKTTKLVSK--------L-KAHDQPCIGV---------------------------DWHPV---EPSKVATCGWDGL 498 (503)
T ss_pred Eeechhhhhhhc--------c-ccCCcceEEE---------------------------EecCC---CcceeEecccCce
Confidence 999988763211 1 0112333334 44554 3567889999999
Q ss_pred ccCCC
Q 005352 635 CATWP 639 (701)
Q Consensus 635 ~~~W~ 639 (701)
|++|+
T Consensus 499 Ikiwd 503 (503)
T KOG0282|consen 499 IKIWD 503 (503)
T ss_pred eEecC
Confidence 99996
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-31 Score=266.42 Aligned_cols=423 Identities=17% Similarity=0.251 Sum_probs=299.8
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeee--eeecCCCCCCceeE
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL--TEVDIPEIDPSCIY 299 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~--~~~~~~~~~~~~~~ 299 (701)
.+.|.+.+++... ....+..|..+++-.+|+|.|-|+|+|...|+|||||....+.+ .+++....+
T Consensus 38 Gksv~ir~i~~~~-------~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~----- 105 (603)
T KOG0318|consen 38 GKSVIIRNIDNPA-------SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGP----- 105 (603)
T ss_pred CCEEEEEECCCcc-------ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccc-----
Confidence 4556677655432 23456679999999999999999999999999999998764432 233333322
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecC-CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCc
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTS-ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKT 376 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~ 376 (701)
+..+.|+.+...+.....+.. -+....++. +..+-++.||...|.++.|-|.. +++||+.|++
T Consensus 106 --------I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS------G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~ 171 (603)
T KOG0318|consen 106 --------IKDISWDFDSKRIAAVGEGRERFGHVFLWDS------GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNT 171 (603)
T ss_pred --------cccceeCCCCcEEEEEecCccceeEEEEecC------CCccceeeccceeEeeeeccCCCceEEEeccCCCe
Confidence 333444444444333322211 112222222 25577889999999999999988 9999999999
Q ss_pred EEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe----cCCCcEEEEEEeeCCCeE
Q 005352 377 VRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----DIRQIVTAVCYRPDGQGG 451 (701)
Q Consensus 377 I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~----~~~~~i~~i~~sp~g~~l 451 (701)
|.+|+-.-.+....+. |...|+|+.|+| |+.+|++++.||++.+||=.+++.+..+ .|.+.|.+++|+||++.+
T Consensus 172 v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~ 250 (603)
T KOG0318|consen 172 VAFFEGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF 250 (603)
T ss_pred EEEeeCCCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE
Confidence 9999876666666665 899999999999 9999999999999999999999888544 588999999999999999
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCC
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGN 531 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~ 531 (701)
++++.|.+++|||+.+.++..+..+... -...-.++.|- ...|++.+.+|.|.+++...........+|...
T Consensus 251 ~T~SaDkt~KIWdVs~~slv~t~~~~~~-----v~dqqvG~lWq---kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ 322 (603)
T KOG0318|consen 251 LTVSADKTIKIWDVSTNSLVSTWPMGST-----VEDQQVGCLWQ---KDHLITVSLSGTINYLNPSDPSVLKVISGHNKS 322 (603)
T ss_pred EEecCCceEEEEEeeccceEEEeecCCc-----hhceEEEEEEe---CCeEEEEEcCcEEEEecccCCChhheecccccc
Confidence 9999999999999999876554332111 12233445553 578999999999999998877655566669999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcc---ccccccccccccCCceEEecCCCCC----------------
Q 005352 532 QLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHD---QAKTIRSLERFTTNASIAIPWCGLK---------------- 592 (701)
Q Consensus 532 v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~---------------- 592 (701)
|+++..+|++++|++|+.||.|.-|+..++...... +...+..+........+.+.|..+-
T Consensus 323 ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~ 402 (603)
T KOG0318|consen 323 ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVV 402 (603)
T ss_pred eeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccccccee
Confidence 999999999999999999999999999877643211 1111222111111122222221110
Q ss_pred -CCC--------------------------------------------------------CCCCCccc------------
Q 005352 593 -CGN--------------------------------------------------------AEKEPQLH------------ 603 (701)
Q Consensus 593 -~~~--------------------------------------------------------~~~~~~~~------------ 603 (701)
... ......+.
T Consensus 403 ~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~ 482 (603)
T KOG0318|consen 403 KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK 482 (603)
T ss_pred ecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee
Confidence 000 00000000
Q ss_pred -cCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEE
Q 005352 604 -VSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVT 682 (701)
Q Consensus 604 -~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT 682 (701)
......++.+++||+ +.+|+++-..|.+.+|+.+...... ..+.||.+.+.+++++++ +.+++|
T Consensus 483 ~~~h~a~iT~vaySpd----~~yla~~Da~rkvv~yd~~s~~~~~----------~~w~FHtakI~~~aWsP~-n~~vAT 547 (603)
T KOG0318|consen 483 LLEHRAAITDVAYSPD----GAYLAAGDASRKVVLYDVASREVKT----------NRWAFHTAKINCVAWSPN-NKLVAT 547 (603)
T ss_pred eecccCCceEEEECCC----CcEEEEeccCCcEEEEEcccCceec----------ceeeeeeeeEEEEEeCCC-ceEEEe
Confidence 011223567778897 7788888888999999987766411 124455788999999999 999999
Q ss_pred ecCCCeEeEEee
Q 005352 683 AGWDGRIRSFLN 694 (701)
Q Consensus 683 gg~DG~Irvw~~ 694 (701)
|+-|-.|.||..
T Consensus 548 GSlDt~Viiysv 559 (603)
T KOG0318|consen 548 GSLDTNVIIYSV 559 (603)
T ss_pred ccccceEEEEEc
Confidence 999999999963
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=259.51 Aligned_cols=283 Identities=24% Similarity=0.416 Sum_probs=237.6
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
..+.+|++.|+.++|+|+|.+|||||.|..|.+|++....
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc---------------------------------------- 80 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC---------------------------------------- 80 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc----------------------------------------
Confidence 3478999999999999999999999999999999976543
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
+...++++|++.|..+.|.+++ .+++++.|++|+.||++++++++.++ |...|+.+.
T Consensus 81 ---------------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~ 139 (338)
T KOG0265|consen 81 ---------------------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD 139 (338)
T ss_pred ---------------------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC
Confidence 2344567999999999999999 99999999999999999999999988 999999998
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
-+.....++.+++.|+++++||+++...++.+..+..+++++|...+..+++|+-|+.|++||++.+.....
T Consensus 140 p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~-------- 211 (338)
T KOG0265|consen 140 PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT-------- 211 (338)
T ss_pred ccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEE--------
Confidence 665556678889999999999999999999998899999999999999999999999999999988775432
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc------ceeeecccCC--CCeEEEEEecCCCEEEEEeCCCcE
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------IGKYKGLRRS--GNQLSACFTSDGKHIVSAGEDSNV 553 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~------~~~~~~~~~~--~~v~~l~~s~dg~~l~sgs~Dg~I 553 (701)
...|...|+++..+| ++.++++-+.|.++++||++.. ...+.++.|. .....++|+|++.++..|+.|..+
T Consensus 212 lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~v 290 (338)
T KOG0265|consen 212 LSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFV 290 (338)
T ss_pred eecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceE
Confidence 456778999999999 8999999999999999998732 4455554443 345678999999999999999999
Q ss_pred EEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCC
Q 005352 554 YMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPK 633 (701)
Q Consensus 554 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~ 633 (701)
++||..... +..-|+| ....+..+.|.|. ...+.+++.|+
T Consensus 291 yvwd~~~r~---------------------~lyklpG---------------h~gsvn~~~Fhp~----e~iils~~sdk 330 (338)
T KOG0265|consen 291 YVWDTTSRR---------------------ILYKLPG---------------HYGSVNEVDFHPT----EPIILSCSSDK 330 (338)
T ss_pred EEeeccccc---------------------EEEEcCC---------------cceeEEEeeecCC----CcEEEEeccCc
Confidence 999976543 1112222 2345667788886 55667788888
Q ss_pred ccc
Q 005352 634 GCA 636 (701)
Q Consensus 634 ~~~ 636 (701)
++.
T Consensus 331 ~i~ 333 (338)
T KOG0265|consen 331 TIY 333 (338)
T ss_pred eeE
Confidence 775
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=275.97 Aligned_cols=276 Identities=21% Similarity=0.322 Sum_probs=233.6
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.+..+.+..+++|+..|.+.+|+...- .-...+++|..+|.+|.|+++|.+++||+.+|.|++|+..-+.
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~f-------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--- 171 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTSF-------NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--- 171 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCcee-------eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh---
Confidence 344567789999999999999974221 1122478899999999999999999999999999999975432
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCC-ccCeEEEEEecC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH-SGEILDLSWSKN 365 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~l~~s~~ 365 (701)
++.+++| ...|++++|+|+
T Consensus 172 ------------------------------------------------------------Vk~~~ahh~eaIRdlafSpn 191 (464)
T KOG0284|consen 172 ------------------------------------------------------------VKIIQAHHAEAIRDLAFSPN 191 (464)
T ss_pred ------------------------------------------------------------hHHhhHhhhhhhheeccCCC
Confidence 2223444 489999999998
Q ss_pred C-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEE
Q 005352 366 N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAV 442 (701)
Q Consensus 366 ~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i 442 (701)
+ .|++++.||+|+|||....+....+. |.-.|.+++|+| ...++++|+.|..|++||.+++.++ ....|+..|+.+
T Consensus 192 DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~ 270 (464)
T KOG0284|consen 192 DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAV 270 (464)
T ss_pred CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEE
Confidence 8 99999999999999998887766665 888999999999 8889999999999999999999988 566789999999
Q ss_pred EEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC-ccce
Q 005352 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-NVIG 521 (701)
Q Consensus 443 ~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~-~~~~ 521 (701)
.|+|++++|++++.|..+++||+++.+... ....|...++++.|+|-...+|.+|+.||.|..|.+. +...
T Consensus 271 ~f~~n~N~Llt~skD~~~kv~DiR~mkEl~--------~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 271 KFNPNGNWLLTGSKDQSCKVFDIRTMKELF--------TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred EEcCCCCeeEEccCCceEEEEehhHhHHHH--------HhhcchhhheeeccccccccceeeccCCCceEEEeccccccc
Confidence 999999999999999999999999543221 2455778899999999999999999999999999987 3233
Q ss_pred eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 522 KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 522 ~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
......|...|.+++|+|-|..|++|+.|.++++|.-.-+
T Consensus 343 ~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 343 GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred cCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 3344569999999999999999999999999999975443
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.1e-32 Score=256.44 Aligned_cols=287 Identities=18% Similarity=0.277 Sum_probs=243.5
Q ss_pred cccCccee--eecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGER--VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~--~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|.+++.. +.+++..+++|+.|..|.+|+.....+.+ ..+++|.++|..+.|.+|+..|+++|.|.+|+.||
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~------~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF------WVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce------eeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 57778765 55666788999999999999965444333 34678999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
++++++ +..+++|..-|.
T Consensus 119 ~~tG~~--------------------------------------------------------------~rk~k~h~~~vN 136 (338)
T KOG0265|consen 119 AETGKR--------------------------------------------------------------IRKHKGHTSFVN 136 (338)
T ss_pred ccccee--------------------------------------------------------------eehhccccceee
Confidence 999864 345578999999
Q ss_pred EEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecC
Q 005352 359 DLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDI 435 (701)
Q Consensus 359 ~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~ 435 (701)
.+.-+.-| ++.+++.|++++|||+++..+++++.....++++.|.. ....+++|+.|+.|++||++..... ...+|
T Consensus 137 s~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh 215 (338)
T KOG0265|consen 137 SLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGH 215 (338)
T ss_pred ecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecc
Confidence 98855556 78899999999999999999999999899999999998 8899999999999999999988776 56689
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
.++|+.+..+|+|.++++-+.|.++++||++.........................+.|+| ++..+.+|+.|..+++||
T Consensus 216 ~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 216 ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFVYVWD 294 (338)
T ss_pred cCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-CCCccccccccceEEEee
Confidence 9999999999999999999999999999998654332211112222233344566788999 789999999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
.......++..+|.+.|+++.|+|...+|.+++.|.+|++=.
T Consensus 295 ~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 295 TTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 998888899999999999999999999999999999998744
No 20
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=268.99 Aligned_cols=252 Identities=27% Similarity=0.472 Sum_probs=216.2
Q ss_pred ccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccccee
Q 005352 241 YKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (701)
Q Consensus 241 ~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (701)
+..+.++.|+..|+-+.||++|+|||||+.|.+..||++.....+
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~----------------------------------- 259 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF----------------------------------- 259 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce-----------------------------------
Confidence 344678899999999999999999999999999999998664311
Q ss_pred eEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCC--CCe
Q 005352 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHS--NYV 397 (701)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~--~~V 397 (701)
+..+++.+|..+|..|.|||+. +|++|+.|..+++||+.++.+...+.+. ..+
T Consensus 260 ------------------------kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~ 315 (519)
T KOG0293|consen 260 ------------------------KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSV 315 (519)
T ss_pred ------------------------eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCc
Confidence 4567889999999999999999 9999999999999999999999999855 889
Q ss_pred EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC-CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeE
Q 005352 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~ 476 (701)
.+++|.| |+..|++|+.|+.+..||+.....-.|.+.+ ..|.++++++||+++++.+.|..+++|+..+....
T Consensus 316 ~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr----- 389 (519)
T KOG0293|consen 316 SSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR----- 389 (519)
T ss_pred ceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh-----
Confidence 9999999 9999999999999999999877766666654 45999999999999999999999999998764321
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc--ceeeecccCCCCeEEEEEec-CCCEEEEEeCCCcE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--IGKYKGLRRSGNQLSACFTS-DGKHIVSAGEDSNV 553 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~l~~s~-dg~~l~sgs~Dg~I 553 (701)
.......+|++++++. ++.++++.-.+..|++||+... ..+|.++.....+..-||-- +..++++||+|+.|
T Consensus 390 ----~lise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv 464 (519)
T KOG0293|consen 390 ----GLISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV 464 (519)
T ss_pred ----ccccccCceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence 1333457899999999 7999999999999999999854 45566666666777778865 45899999999999
Q ss_pred EEEeCCCCC
Q 005352 554 YMWNCIGHE 562 (701)
Q Consensus 554 ~iWd~~~~~ 562 (701)
|||+..+++
T Consensus 465 yIWhr~sgk 473 (519)
T KOG0293|consen 465 YIWHRISGK 473 (519)
T ss_pred EEEEccCCc
Confidence 999988776
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6e-31 Score=274.46 Aligned_cols=427 Identities=15% Similarity=0.210 Sum_probs=298.8
Q ss_pred ccCcceeeecCc--cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 005352 202 KQGEGERVRLNE--EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 202 ~~~~~~~~~~~~--~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 279 (701)
+-.++.++...+ ..+++|+.|-.++||..+.... .....+.+|++.|.++-|..+..-|.|.+.||.+.+|..
T Consensus 144 ~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~-----~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~ 218 (893)
T KOG0291|consen 144 HFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN-----LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTC 218 (893)
T ss_pred CccceeEEEeccCCceEEeccccceEEEEEeccccc-----cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEe
Confidence 344555555544 4677799999999999875443 223457789999999999999999999999999999998
Q ss_pred ecCee--eee---ecC---------CCCCCcee-------EEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCc
Q 005352 280 VEDER--LTE---VDI---------PEIDPSCI-------YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPK 338 (701)
Q Consensus 280 ~~~~~--~~~---~~~---------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (701)
..... ... ... .+...... .+.......+.+..+.+ ......+.|...
T Consensus 219 ~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-----------~t~~lvvgFssG 287 (893)
T KOG0291|consen 219 DLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-----------GTNLLVVGFSSG 287 (893)
T ss_pred cCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-----------CceEEEEEecCC
Confidence 73210 000 000 00000000 00000101111111111 112222334444
Q ss_pred cccccC----CCeEEEcCCccCeEEEEEecCC-eEEEEEC-CCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEE
Q 005352 339 VFRILE----KPLHEFHGHSGEILDLSWSKNN-YLLSASI-DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFI 411 (701)
Q Consensus 339 ~~~~~~----~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~-dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~ 411 (701)
.|.+.+ ..++.+.-....|..++|+..| .|+.|+. -|.+-||+..+...+...+ |...+++++++| |+.+++
T Consensus 288 ~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSp-Dgq~ia 366 (893)
T KOG0291|consen 288 EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSP-DGQLIA 366 (893)
T ss_pred eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECC-CCcEEE
Confidence 443332 3466666667889999999888 7766654 5899999999887766555 999999999999 999999
Q ss_pred EEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCee
Q 005352 412 SGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 412 sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
+|+.||+|+|||..++-+. .+..|...|+.++|+..|+.+++.+.||+|+.||+........ ...+......
T Consensus 367 TG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRT-------ft~P~p~Qfs 439 (893)
T KOG0291|consen 367 TGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRT-------FTSPEPIQFS 439 (893)
T ss_pred eccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeee-------ecCCCceeee
Confidence 9999999999999999877 5667999999999999999999999999999999986543221 1222334567
Q ss_pred EEEEecCCCCEEEEEECCC-cEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcccc
Q 005352 491 GFQFLPQDSSKVMVSCADS-QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQA 569 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg-~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~ 569 (701)
+++..| .+.++.+|+.|. .|.+|++.+....-...+|.++|.+++|+|++..|+++|.|.+|++||+-.....
T Consensus 440 cvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~----- 513 (893)
T KOG0291|consen 440 CVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT----- 513 (893)
T ss_pred EEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-----
Confidence 888888 688888888875 5999999988777667779999999999999999999999999999998765310
Q ss_pred ccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccc
Q 005352 570 KTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQL 649 (701)
Q Consensus 570 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~ 649 (701)
...+ ...+.+..+.|.|+ +..++....||.+.+|+.+....+..+
T Consensus 514 --vEtl-----------------------------~i~sdvl~vsfrPd----G~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 514 --VETL-----------------------------EIRSDVLAVSFRPD----GKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred --eeeE-----------------------------eeccceeEEEEcCC----CCeEEEEEecceEEEEEhhhceeeccc
Confidence 0011 11234566788998 677778889999999998877655444
Q ss_pred cccccc---hhhhhhhh-----hcc-cccccccCCCccEEEEecCCCeEeEEee
Q 005352 650 SSASAL---HKSQYKFL-----KSS-CLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 650 ~~~~~~---~~~~~~~~-----~~~-~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
.+-..+ +.....+. ++. ..+++.+.| |..|++||....|++|+.
T Consensus 559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD-G~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSAD-GKCILAGGESNSICIYDV 611 (893)
T ss_pred cchhhccccccccceeehhhcccCCceEEEEEcCC-CCEEEecCCcccEEEEEC
Confidence 321100 11000000 111 224566777 999999999999999873
No 22
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.8e-32 Score=260.13 Aligned_cols=294 Identities=18% Similarity=0.314 Sum_probs=241.3
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+++|.+.|.|+++.|.+++++||+.|++|+|||+.+++.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--------------------------------------- 185 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--------------------------------------- 185 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE---------------------------------------
Confidence 45788999999999999999999999999999999999863
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
..++.||...|..+++|+-. ||++++.|+.|+.||++..+.++.+. |-..|.|++
T Consensus 186 -----------------------kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~ 242 (460)
T KOG0285|consen 186 -----------------------KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLD 242 (460)
T ss_pred -----------------------EEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEe
Confidence 34567899999999999998 99999999999999999999988875 999999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
.+| .-+.|++|+.|.++||||+++...+ .+.+|..+|..+.+.|-...+++|+.|++|++||++.++-...
T Consensus 243 lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t------- 314 (460)
T KOG0285|consen 243 LHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT------- 314 (460)
T ss_pred ccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe-------
Confidence 999 8899999999999999999998777 4557999999999999888999999999999999998875432
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
...|...+.+++.+| ....+++++.| .|+-|++...........|...|++++...|| ++++|+++|.+.+||.++
T Consensus 315 -lt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 315 -LTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred -eecccceeeEEecCC-chhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCc
Confidence 234557799999999 55666666655 78999998766655566688999999998775 789999999999999998
Q ss_pred CCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCC
Q 005352 561 HEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPE 640 (701)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~ 640 (701)
+..-...+.. .-. ........+...||.-. +..++++..|++|++|.+
T Consensus 391 g~nyQ~~~t~----------------vqp------------GSl~sEagI~as~fDkt----g~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 391 GHNYQRGQTI----------------VQP------------GSLESEAGIFASCFDKT----GSRLITGEADKTIKMYKE 438 (460)
T ss_pred Cccccccccc----------------ccC------------CccccccceeEEeeccc----CceEEeccCCcceEEEec
Confidence 8632211100 000 00112334455566553 778999999999999987
Q ss_pred ccC
Q 005352 641 EKL 643 (701)
Q Consensus 641 ~~~ 643 (701)
+.-
T Consensus 439 De~ 441 (460)
T KOG0285|consen 439 DEH 441 (460)
T ss_pred ccc
Confidence 654
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.9e-32 Score=284.68 Aligned_cols=240 Identities=27% Similarity=0.461 Sum_probs=206.3
Q ss_pred eecCccccccccccceEEEEEccCcc-------chh-----------------hhcccCceeccCCCcEEEEEEccCCCE
Q 005352 209 VRLNEEDAMFCSKVQRVKVYHCKKRS-------KEL-----------------SALYKGQEIQAHDGSILTMKFSPDGQY 264 (701)
Q Consensus 209 ~~~~~~~~~~~~~d~~v~vw~~~~~~-------~~~-----------------~~~~~~~~l~~H~~~I~~l~fspdg~~ 264 (701)
++.+...++.|-.|..|++|.+.... ..+ .......++.||.++|..+.|+|+.++
T Consensus 386 fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rf 465 (707)
T KOG0263|consen 386 FSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRF 465 (707)
T ss_pred ecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccc
Confidence 44444567778899999999987311 011 111223458899999999999999999
Q ss_pred EEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccC
Q 005352 265 LASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILE 344 (701)
Q Consensus 265 Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (701)
|+++++|++||+|.+.+..
T Consensus 466 LlScSED~svRLWsl~t~s------------------------------------------------------------- 484 (707)
T KOG0263|consen 466 LLSCSEDSSVRLWSLDTWS------------------------------------------------------------- 484 (707)
T ss_pred eeeccCCcceeeeecccce-------------------------------------------------------------
Confidence 9999999999999998864
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
.+-.++||..+|.++.|+|.| ||+|+|.|++.++|.....++++.|. |-+.|.|++|+| +.+|+++|+.|.+||+|
T Consensus 485 -~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlW 562 (707)
T KOG0263|consen 485 -CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLW 562 (707)
T ss_pred -eEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCCCCceEEEE
Confidence 234567999999999999999 99999999999999999999999987 999999999999 99999999999999999
Q ss_pred eCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCE
Q 005352 423 AVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (701)
Q Consensus 423 d~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~ 501 (701)
|+.++..+. +.+|.++|++++|+|+|++|++|+.||.|.+||+.++.+.. ....|...|.++.|+. ++..
T Consensus 563 Dv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~--------~l~~Ht~ti~SlsFS~-dg~v 633 (707)
T KOG0263|consen 563 DVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK--------QLKGHTGTIYSLSFSR-DGNV 633 (707)
T ss_pred EcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh--------hhhcccCceeEEEEec-CCCE
Confidence 999998885 45799999999999999999999999999999999876543 2345578899999999 8999
Q ss_pred EEEEECCCcEEEEeCCccc
Q 005352 502 VMVSCADSQVRILQGPNVI 520 (701)
Q Consensus 502 l~~~s~dg~I~iwd~~~~~ 520 (701)
|++|+.|++|++||+....
T Consensus 634 Lasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 634 LASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEecCCCCeEEEEEchhhc
Confidence 9999999999999976433
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.1e-31 Score=262.46 Aligned_cols=289 Identities=19% Similarity=0.297 Sum_probs=235.2
Q ss_pred cccCcceeeecCc--c-ccccccccceEEEEEccCccch--hhh-cccCceecc----CCCcEEEEEEccCCCEEEEEeC
Q 005352 201 DKQGEGERVRLNE--E-DAMFCSKVQRVKVYHCKKRSKE--LSA-LYKGQEIQA----HDGSILTMKFSPDGQYLASAGD 270 (701)
Q Consensus 201 ~~~~~~~~~~~~~--~-~~~~~~~d~~v~vw~~~~~~~~--~~~-~~~~~~l~~----H~~~I~~l~fspdg~~Lasgs~ 270 (701)
.|..++.....++ + .++.++.+-..++|++...... ... +.....+-+ .+..|++++|+.+|..||+|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 4556665544444 4 5677899999999998641111 100 111101111 2357999999999999999999
Q ss_pred CCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEE
Q 005352 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (701)
Q Consensus 271 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (701)
||.++||+.... .+.+|
T Consensus 256 ~G~~riw~~~G~---------------------------------------------------------------l~~tl 272 (524)
T KOG0273|consen 256 DGEARIWNKDGN---------------------------------------------------------------LISTL 272 (524)
T ss_pred CcEEEEEecCch---------------------------------------------------------------hhhhh
Confidence 999999997543 24456
Q ss_pred cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc
Q 005352 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~ 428 (701)
..|+++|.+|+|+..| ||++++.|+++.+||..++...+.|. |..+-..+.|- +...|++.+.|+.|+|+.+....
T Consensus 273 ~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~ 350 (524)
T KOG0273|consen 273 GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDR 350 (524)
T ss_pred hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCC
Confidence 7799999999999999 99999999999999999999999998 66665788996 57789999999999999997665
Q ss_pred EE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC--------CC
Q 005352 429 VV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ--------DS 499 (701)
Q Consensus 429 ~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~--------~~ 499 (701)
++ .+.+|.+.|.++.|+|.|..|++++.|++++||.+....... ....|...|..+.|+|. .+
T Consensus 351 P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~--------~l~~Hskei~t~~wsp~g~v~~n~~~~ 422 (524)
T KOG0273|consen 351 PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH--------DLQAHSKEIYTIKWSPTGPVTSNPNMN 422 (524)
T ss_pred cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh--------hhhhhccceeeEeecCCCCccCCCcCC
Confidence 55 777899999999999999999999999999999987654321 13445567777888774 45
Q ss_pred CEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 500 SKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
..+++++.|++|++||+....+.+....|..+|++++|+|+|+|+|+|+.||.|.||+..+++
T Consensus 423 ~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 423 LMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred ceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 689999999999999999999999998999999999999999999999999999999999887
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.1e-31 Score=253.37 Aligned_cols=324 Identities=14% Similarity=0.163 Sum_probs=260.9
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.|..|+++|++++.+|+.+++||||.|....||++.++.
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge----------------------------------------- 97 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE----------------------------------------- 97 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-----------------------------------------
Confidence 466799999999999999999999999999999998874
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f 402 (701)
....+.+|++.|+++.|+.++ +|+||..+|.|+||...++.....+. .-..+.=+.|
T Consensus 98 ---------------------~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~W 156 (399)
T KOG0296|consen 98 ---------------------FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKW 156 (399)
T ss_pred ---------------------ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEe
Confidence 235668999999999999999 99999999999999999998888775 5566788999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCC-cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSC-HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
+| ...+|++|+.||.+-+|.+.++ .+..+.+|..++++=.|.|+|+.++++..||+|++|++.+++.....
T Consensus 157 Hp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~------- 228 (399)
T KOG0296|consen 157 HP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKI------- 228 (399)
T ss_pred cc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEe-------
Confidence 99 9999999999999999999995 44466789999999999999999999999999999999998764322
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc--------cCCC---CeEEEEEecCCCEEEEEeCC
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL--------RRSG---NQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~--------~~~~---~v~~l~~s~dg~~l~sgs~D 550 (701)
........+++.++. .+..++.|+.++.+++.+....+...-.. .+.. .|-++.|+..-.+.|+|+-|
T Consensus 229 ~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vd 307 (399)
T KOG0296|consen 229 TQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVD 307 (399)
T ss_pred cccccCcCCcccccc-ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccccc
Confidence 111234456677766 67888888888888888765433322221 1333 34445555566788999999
Q ss_pred CcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccC
Q 005352 551 SNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFES 630 (701)
Q Consensus 551 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s 630 (701)
|+|.|||+...... ....+..++..+.|.+ ...++++.
T Consensus 308 G~i~iyD~a~~~~R-------------------------------------~~c~he~~V~~l~w~~-----t~~l~t~c 345 (399)
T KOG0296|consen 308 GTIAIYDLAASTLR-------------------------------------HICEHEDGVTKLKWLN-----TDYLLTAC 345 (399)
T ss_pred ceEEEEecccchhh-------------------------------------eeccCCCceEEEEEcC-----cchheeec
Confidence 99999998766521 1111233455556655 35678889
Q ss_pred CCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 631 FPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 631 ~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
.++.++.|+.+.+.+.....+| +..|++++++++ .+.|||++.|++-+||.
T Consensus 346 ~~g~v~~wDaRtG~l~~~y~GH-----------~~~Il~f~ls~~-~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 346 ANGKVRQWDARTGQLKFTYTGH-----------QMGILDFALSPQ-KRLVVTVSDDNTALVFE 396 (399)
T ss_pred cCceEEeeeccccceEEEEecC-----------chheeEEEEcCC-CcEEEEecCCCeEEEEe
Confidence 9999999999999998888888 568899999999 99999999999999996
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-31 Score=257.26 Aligned_cols=298 Identities=21% Similarity=0.366 Sum_probs=253.3
Q ss_pred HHHHHhHHhhhccceeeecccCcceeeecCccc--cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc
Q 005352 183 ERVKKRWFSRLRSLACVVDKQGEGERVRLNEED--AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP 260 (701)
Q Consensus 183 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp 260 (701)
++....|..+.....++..+...+..+-+.+.. .++++.|.+|++||+..... ...++||+..|..|.|+.
T Consensus 88 ~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-------e~~LrGHt~sv~di~~~a 160 (406)
T KOG0295|consen 88 KRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-------ERSLRGHTDSVFDISFDA 160 (406)
T ss_pred ccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-------hhhhhccccceeEEEEec
Confidence 444455666655455555566666665555544 44567799999999765433 245889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccc
Q 005352 261 DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVF 340 (701)
Q Consensus 261 dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (701)
.|++||+++.|=.+++||..+..
T Consensus 161 ~Gk~l~tcSsDl~~~LWd~~~~~--------------------------------------------------------- 183 (406)
T KOG0295|consen 161 SGKYLATCSSDLSAKLWDFDTFF--------------------------------------------------------- 183 (406)
T ss_pred CccEEEecCCccchhheeHHHHH---------------------------------------------------------
Confidence 99999999999999999987632
Q ss_pred cccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCc
Q 005352 341 RILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGK 418 (701)
Q Consensus 341 ~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~ 418 (701)
..+..+.+|...|.+++|-|.| ++++++.|.+|+.|++.++.|+.+|. |...|..++.+. |+.++++++.|.+
T Consensus 184 ----~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqt 258 (406)
T KOG0295|consen 184 ----RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQT 258 (406)
T ss_pred ----HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCce
Confidence 2344567899999999999999 99999999999999999999999998 889999999998 9999999999999
Q ss_pred EEEEeCCCCcEE-EEecCCCcEEEEEEeeC---------------CCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc
Q 005352 419 VRIWAVLSCHVV-DWVDIRQIVTAVCYRPD---------------GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482 (701)
Q Consensus 419 v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~---------------g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~ 482 (701)
|++|-+.++++. ....|+.+|.+++|.|. ++++.+++.|++|++||+.++.+.+. .
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t--------L 330 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT--------L 330 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE--------E
Confidence 999999998766 45678889999999773 35899999999999999999977653 4
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 483 ~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.+|...|.+++|+| .|++|+++..|+++++||+++..+......|..-++++.|+.+..|++||+-|..+++|..
T Consensus 331 ~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 56779999999999 8999999999999999999988887777789999999999999999999999999999974
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1e-30 Score=239.83 Aligned_cols=280 Identities=21% Similarity=0.295 Sum_probs=226.0
Q ss_pred CEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccc
Q 005352 263 QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRI 342 (701)
Q Consensus 263 ~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (701)
-+|+|+|.|.+||+|...+|.+..++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi------------------------------------------------------ 36 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI------------------------------------------------------ 36 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE------------------------------------------------------
Confidence 48999999999999999999765544
Q ss_pred cCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCe--eeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcE
Q 005352 343 LEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKV 419 (701)
Q Consensus 343 ~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~--~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v 419 (701)
+...+.|..|...|++..+++.....||+||+++++ ++.+|. |...|+.+.|.. +++.+++|+.||++
T Consensus 37 --------qh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 37 --------QHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTV 107 (311)
T ss_pred --------ecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCceE
Confidence 334567999999999944444445689999999875 466666 889999999999 99999999999999
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 420 RIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 420 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
+|||++...+...+.+..+|+++..+|+...|++|..+|.|++||+....+... ........|.++...| ++
T Consensus 108 kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~-------liPe~~~~i~sl~v~~-dg 179 (311)
T KOG0315|consen 108 KIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE-------LIPEDDTSIQSLTVMP-DG 179 (311)
T ss_pred EEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc-------cCCCCCcceeeEEEcC-CC
Confidence 999999988888889999999999999999999999999999999998754322 2233346799999999 89
Q ss_pred CEEEEEECCCcEEEEeCCc------cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcccccccc
Q 005352 500 SKVMVSCADSQVRILQGPN------VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIR 573 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~~------~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 573 (701)
.+++++...|..++|++-. .....+...|.+.+..+.+|||++||+++|.|.+++||+.++.- . ....+.
T Consensus 180 sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~-k---le~~l~ 255 (311)
T KOG0315|consen 180 SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF-K---LELVLT 255 (311)
T ss_pred cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce-e---eEEEee
Confidence 9999999999999999753 22333344589999999999999999999999999999988761 1 111111
Q ss_pred ccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCcccccc
Q 005352 574 SLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSA 652 (701)
Q Consensus 574 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~ 652 (701)
..+. =+-..+||.+ +.++++++.|..+++|+.+....+.+.++|
T Consensus 256 gh~r-------------------------------WvWdc~FS~d----g~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 256 GHQR-------------------------------WVWDCAFSAD----GEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred cCCc-------------------------------eEEeeeeccC----ccEEEecCCCCceeecccccCceeeecCCc
Confidence 1100 0112356665 889999999999999999999988888777
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=3.9e-30 Score=268.42 Aligned_cols=444 Identities=18% Similarity=0.250 Sum_probs=319.1
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
..++.+++.+++... ..|.+-+.......+.. .-..-...|++++.+||+.+|++++..+.+++|++.+++.+.
T Consensus 25 ~~~s~nG~~L~t~~~-d~Vi~idv~t~~~~l~s-----~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~ir 98 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACG-DRVIIIDVATGSIALPS-----GSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIR 98 (775)
T ss_pred eeECCCCCEEEEecC-ceEEEEEccCCceeccc-----CCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhH
Confidence 556667776665443 44556555443321111 122356689999999999999999999999999999999888
Q ss_pred eecC-CCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 287 EVDI-PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 287 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
.++. ++.|...+.+.+.. . .+ ..++.++...+++... +...+.|+||.+.|..+.|+|+
T Consensus 99 swKa~He~Pvi~ma~~~~g--~------------Ll--AtggaD~~v~VWdi~~----~~~th~fkG~gGvVssl~F~~~ 158 (775)
T KOG0319|consen 99 SWKAIHEAPVITMAFDPTG--T------------LL--ATGGADGRVKVWDIKN----GYCTHSFKGHGGVVSSLLFHPH 158 (775)
T ss_pred hHhhccCCCeEEEEEcCCC--c------------eE--EeccccceEEEEEeeC----CEEEEEecCCCceEEEEEeCCc
Confidence 8876 44444333333322 1 11 1122223333332221 2567899999999999999998
Q ss_pred C---eEEEEECCCcEEEEECCCCee-eeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEE
Q 005352 366 N---YLLSASIDKTVRLWRVGNDHC-LRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT 440 (701)
Q Consensus 366 ~---~l~s~s~dg~I~iWd~~~~~~-~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~ 440 (701)
- .|++|..|++|++||+++... +.+.. |.+.|++++|.+ ++..+++++.|..+.|||+.+.+..........+-
T Consensus 159 ~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E 237 (775)
T KOG0319|consen 159 WNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLE 237 (775)
T ss_pred cchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhheechhhhee
Confidence 6 789999999999999986544 55554 999999999999 89999999999999999998888888888888899
Q ss_pred EEEEeeC-----CCeEEEEecCCcEEEEECCCCeeeeee-----------------------------------eEEeec
Q 005352 441 AVCYRPD-----GQGGIVGSMMGDCRFYNVSDNHLELDA-----------------------------------EICVHS 480 (701)
Q Consensus 441 ~i~~sp~-----g~~l~~gs~dg~v~i~d~~~~~~~~~~-----------------------------------~~~~~~ 480 (701)
++.+-++ +.++++++.+|.+++||..+.+..... .+.+..
T Consensus 238 ~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k 317 (775)
T KOG0319|consen 238 SVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVK 317 (775)
T ss_pred eEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEeh
Confidence 9999887 779999999999999998765432211 111222
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
...+....|..++|.-.+.+++++++..+.+++|+..+.... -..+|...|.++....+|.+|+||+.|.++++|.+++
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence 233455678888887668899999999999999998876655 3445999999999777889999999999999999955
Q ss_pred CCCCCc------cccccccccccccCCceE--EecCCCC-CCCCCCCC------Cc-----cccCCCCCCCccccCCCcc
Q 005352 561 HEEPAH------DQAKTIRSLERFTTNASI--AIPWCGL-KCGNAEKE------PQ-----LHVSDDDSPENLAFAPARF 620 (701)
Q Consensus 561 ~~~~~~------~~~~~~~~~~~~~~~~~~--a~~~~~~-~~~~~~~~------~~-----~~~~~~~~~~~l~~sp~~~ 620 (701)
+..... ....++..+....-.... .++-.++ +.|....+ .. ....+...++.++.+|.
T Consensus 397 ~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n-- 474 (775)
T KOG0319|consen 397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN-- 474 (775)
T ss_pred CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC--
Confidence 442111 111222222221112211 1222221 45554431 10 11234556888899995
Q ss_pred ccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 621 SLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 621 ~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
...++++|.|++.++|+.+.+.....+.+| +..+|++.|++. .++++|++.|++||||..
T Consensus 475 --dkLiAT~SqDktaKiW~le~~~l~~vLsGH-----------~RGvw~V~Fs~~-dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 475 --DKLIATGSQDKTAKIWDLEQLRLLGVLSGH-----------TRGVWCVSFSKN-DQLLATCSGDKTVKIWSI 534 (775)
T ss_pred --CceEEecccccceeeecccCceEEEEeeCC-----------ccceEEEEeccc-cceeEeccCCceEEEEEe
Confidence 677889999999999999988878888888 568999999999 999999999999999974
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=1.6e-31 Score=255.41 Aligned_cols=272 Identities=19% Similarity=0.394 Sum_probs=225.9
Q ss_pred ccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec
Q 005352 202 KQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281 (701)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 281 (701)
....+-++.++++.++.|..|++|+|||.+. ......+.||+|.|.|+.|. .+.|++|+.|.+|+|||+++
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~-------~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNS-------LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEecccc-------HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC
Confidence 3345678999999999999999999998543 22334578999999999994 56999999999999999999
Q ss_pred CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE
Q 005352 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (701)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 361 (701)
++ ++.++-+|...|..+.
T Consensus 267 ge--------------------------------------------------------------~l~tlihHceaVLhlr 284 (499)
T KOG0281|consen 267 GE--------------------------------------------------------------PLNTLIHHCEAVLHLR 284 (499)
T ss_pred Cc--------------------------------------------------------------hhhHHhhhcceeEEEE
Confidence 85 4556678999999999
Q ss_pred EecCCeEEEEECCCcEEEEECCCCeeeeee----cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE-ecCC
Q 005352 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-VDIR 436 (701)
Q Consensus 362 ~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~----~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~-~~~~ 436 (701)
|+ +|++++++.|.+|.+||+.+...+... .|...|+.+.|+ .+++++++.|.+|++|++.+++.+.. .+|.
T Consensus 285 f~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHk 360 (499)
T KOG0281|consen 285 FS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHK 360 (499)
T ss_pred Ee-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhccc
Confidence 96 569999999999999999877533222 399999999994 57999999999999999999998854 4678
Q ss_pred CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
..|.|+.| .++++++|+.|.+|++||+..+.+.. ...+|..-|.++.| +.+.+++|+.||+|++||+
T Consensus 361 RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR--------vLeGHEeLvRciRF---d~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 361 RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR--------VLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred ccceehhc--cCeEEEecCCCceEEEEeccccHHHH--------HHhchHHhhhheee---cCceeeeccccceEEEEec
Confidence 88888877 58899999999999999999886532 24556677899999 5689999999999999998
Q ss_pred Cccce---------eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 517 PNVIG---------KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 517 ~~~~~---------~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
..... ......|.+.|..+.| |...|++++.|.+|.|||+.++..
T Consensus 428 ~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 428 QAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 74332 2334458889999999 566899999999999999988763
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.3e-29 Score=235.56 Aligned_cols=265 Identities=20% Similarity=0.350 Sum_probs=214.3
Q ss_pred ccccccccceEEEEEccC-ccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 215 DAMFCSKVQRVKVYHCKK-RSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~-~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
-+++|+.|+.|+||+... ........ .-.+|+..|.+++|+|.|+|||+|+.|.++.||.-..++.
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~ck~v----ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef--------- 95 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTCKTV----LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF--------- 95 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEEEEe----ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce---------
Confidence 578899999999998763 11111111 1137999999999999999999999999999998654431
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s 372 (701)
+.+..+.||..+|.+++|+++| +|++++
T Consensus 96 ---------------------------------------------------ecv~~lEGHEnEVK~Vaws~sG~~LATCS 124 (312)
T KOG0645|consen 96 ---------------------------------------------------ECVATLEGHENEVKCVAWSASGNYLATCS 124 (312)
T ss_pred ---------------------------------------------------eEEeeeeccccceeEEEEcCCCCEEEEee
Confidence 4466789999999999999999 999999
Q ss_pred CCCcEEEEECCCC---eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC---cEE-EEecCCCcEEEEEE
Q 005352 373 IDKTVRLWRVGND---HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC---HVV-DWVDIRQIVTAVCY 444 (701)
Q Consensus 373 ~dg~I~iWd~~~~---~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~---~~~-~~~~~~~~i~~i~~ 444 (701)
.|+.|-||.+..+ +|...++ |...|..+.|+| ...+|++++.|++|++|+-... .++ .+.+|...|.+++|
T Consensus 125 RDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F 203 (312)
T KOG0645|consen 125 RDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAF 203 (312)
T ss_pred CCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEe
Confidence 9999999998754 5666666 999999999999 8999999999999999987632 334 45567779999999
Q ss_pred eeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc-----
Q 005352 445 RPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV----- 519 (701)
Q Consensus 445 sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~----- 519 (701)
+|.|..|++++.|++++||-.... ....|...+..+.|. ...|++++.|+.|++|.....
T Consensus 204 ~~~G~rl~s~sdD~tv~Iw~~~~~------------~~~~~sr~~Y~v~W~---~~~IaS~ggD~~i~lf~~s~~~d~p~ 268 (312)
T KOG0645|consen 204 DNIGSRLVSCSDDGTVSIWRLYTD------------LSGMHSRALYDVPWD---NGVIASGGGDDAIRLFKESDSPDEPS 268 (312)
T ss_pred cCCCceEEEecCCcceEeeeeccC------------cchhcccceEeeeec---ccceEeccCCCEEEEEEecCCCCCch
Confidence 999999999999999999986532 123344678888886 478999999999999975421
Q ss_pred -ceee-ecccCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCC
Q 005352 520 -IGKY-KGLRRSGNQLSACFTSD-GKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 520 -~~~~-~~~~~~~~v~~l~~s~d-g~~l~sgs~Dg~I~iWd~~ 559 (701)
.... ....|...|+++.|.|. ..+|++|+.||.|++|.+.
T Consensus 269 ~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 269 WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 1111 22348889999999995 6899999999999999874
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.8e-30 Score=278.74 Aligned_cols=280 Identities=20% Similarity=0.335 Sum_probs=233.3
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
..+++++..++.++.++.+++|+...... ...+++.+|...|.+++|+|+|++|++|+.|++|+|||+....
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--- 236 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--- 236 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC---
Confidence 56788888988899999999998733221 1224457899999999999999999999999999999994432
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
..++++.+|...|++++|+|++
T Consensus 237 ----------------------------------------------------------~~~~~l~gH~~~v~~~~f~p~g 258 (456)
T KOG0266|consen 237 ----------------------------------------------------------RNLKTLKGHSTYVTSVAFSPDG 258 (456)
T ss_pred ----------------------------------------------------------eEEEEecCCCCceEEEEecCCC
Confidence 3467788999999999999999
Q ss_pred -eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc--EE-EEecCCC--cE
Q 005352 367 -YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VV-DWVDIRQ--IV 439 (701)
Q Consensus 367 -~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~--~~-~~~~~~~--~i 439 (701)
++++|+.|++|+|||+++++++..+. |.+.|++++|++ ++++|++++.|+.|+|||+.++. ++ ....+.. ++
T Consensus 259 ~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 337 (456)
T KOG0266|consen 259 NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPV 337 (456)
T ss_pred CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCce
Confidence 99999999999999999999999998 999999999999 99999999999999999999998 33 3333333 58
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
+.++|+|++.++++++.|+.+++||+............ ... ...+.+....+ .+.++++|+.|+.|++||..+.
T Consensus 338 ~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~----~~~-~~~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 338 TSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH----SNL-VRCIFSPTLST-GGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred eEEEECCCCcEEEEecCCCeEEEEEccCCcceeeeccc----CCc-ceeEecccccC-CCCeEEEEeCCceEEEEeCCcc
Confidence 99999999999999999999999999987654322111 111 12344444455 7899999999999999999876
Q ss_pred ceeeecccC-CCCeEEEEEecCCCEEEEEe--CCCcEEEEeCC
Q 005352 520 IGKYKGLRR-SGNQLSACFTSDGKHIVSAG--EDSNVYMWNCI 559 (701)
Q Consensus 520 ~~~~~~~~~-~~~v~~l~~s~dg~~l~sgs--~Dg~I~iWd~~ 559 (701)
........| ...+..++++|...++++++ .|+.|++|..+
T Consensus 412 ~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 412 GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 666666667 88999999999999999998 78999999864
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-30 Score=251.75 Aligned_cols=248 Identities=19% Similarity=0.344 Sum_probs=219.7
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+|..+|+.+.|+|+-..++++++|++|++||..+++.
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--------------------------------------- 142 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--------------------------------------- 142 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh---------------------------------------
Confidence 45678999999999999999999999999999999998853
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCC-Ceeeeee-cCCCCeEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN-DHCLRVF-PHSNYVTCV 400 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~-~~~~~~~-~h~~~V~~l 400 (701)
...++||.+.|.+|+|+..| +|++++.|-.+++||..+ .+|++.. .|...|.++
T Consensus 143 -----------------------e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V 199 (406)
T KOG0295|consen 143 -----------------------ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSV 199 (406)
T ss_pred -----------------------hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeE
Confidence 34568999999999999999 999999999999999987 4555544 489999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
+|-| .++++++++.|.+|+.|++.++-++ .+.+|...|..+..+.||..+++++.|.++++|-+.+.+....
T Consensus 200 ~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~------ 272 (406)
T KOG0295|consen 200 FFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE------ 272 (406)
T ss_pred EEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh------
Confidence 9999 8899999999999999999999888 4567889999999999999999999999999999998754322
Q ss_pred cccCCCCCCeeEEEEecC--------------CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEE
Q 005352 480 SKKKAPCKRITGFQFLPQ--------------DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIV 545 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~--------------~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 545 (701)
...|..+|.+++|.|. .++++.+++.|++|++||+.+....+...+|...|..++|+|.|+||+
T Consensus 273 --lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ 350 (406)
T KOG0295|consen 273 --LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL 350 (406)
T ss_pred --hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEE
Confidence 2345566778887652 346899999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCC
Q 005352 546 SAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 546 sgs~Dg~I~iWd~~~~~ 562 (701)
++.+|+++++||+++..
T Consensus 351 ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 351 SCADDKTLRVWDLKNLQ 367 (406)
T ss_pred EEecCCcEEEEEeccce
Confidence 99999999999999886
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.7e-30 Score=274.27 Aligned_cols=271 Identities=23% Similarity=0.332 Sum_probs=221.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
...++|..|++|+..||.|-.|..|++|.+...+ +..++....-. +... ...+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~~l~-------~~d~-------------------~sad 430 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDASDLS-------NIDT-------------------ESAD 430 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchhhhc-------cccc-------------------cccc
Confidence 4569999999999999999999999999987542 11111100000 0000 0000
Q ss_pred ccEEEcCCccccc-cCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCC
Q 005352 330 SACVVFPPKVFRI-LEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVD 406 (701)
Q Consensus 330 ~~~~~~~~~~~~~-~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~ 406 (701)
. .....+. ......++.||.++|..+.|+|+. +|+++|.|++||+|.+.+..++..++ |..+|.+++|+| .
T Consensus 431 ~-----~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~ 504 (707)
T KOG0263|consen 431 V-----DVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-R 504 (707)
T ss_pred h-----hhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-C
Confidence 0 0000111 113345689999999999999999 99999999999999999999998887 999999999999 9
Q ss_pred CCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 407 DNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
+-+|||++.|++.++|.....+... +.+|-..|.|+.|+|+..++++|+.|.+|++||+.++.... ...+|
T Consensus 505 GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR--------iF~GH 576 (707)
T KOG0263|consen 505 GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR--------IFTGH 576 (707)
T ss_pred ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEE--------EecCC
Confidence 9999999999999999998776664 55788999999999999999999999999999999987532 13558
Q ss_pred CCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
..+|++++|+| .+.+|++|+.|+.|.+||+..........+|.+.|.++.|+.+|..||+|+.|.+|++||+....
T Consensus 577 ~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 577 KGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CCceEEEEEcC-CCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 89999999999 89999999999999999999877777777789999999999999999999999999999987655
No 34
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.7e-30 Score=232.10 Aligned_cols=243 Identities=27% Similarity=0.516 Sum_probs=212.9
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
..+..|+++|.++.|+-||+|.+|||.|.+|++|+...+.
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~---------------------------------------- 50 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA---------------------------------------- 50 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc----------------------------------------
Confidence 4577899999999999999999999999999999987763
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
.++++.+|..+|.+++.+.++ .|++|+.|+.|.+||+.+++.++.|. |...|+.++
T Consensus 51 ----------------------liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~ 108 (307)
T KOG0316|consen 51 ----------------------LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVR 108 (307)
T ss_pred ----------------------eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEE
Confidence 456778999999999999988 99999999999999999999999997 999999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCc--EEEEe-cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEe
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~-~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~ 478 (701)
|+. +...+++|+.|.++++||.++.. +++.+ .....|.+|... +..|++|+.||+++.||++.+.+..
T Consensus 109 fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~s------ 179 (307)
T KOG0316|consen 109 FNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS------ 179 (307)
T ss_pred ecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeeh------
Confidence 998 89999999999999999998764 34433 345678888775 5689999999999999999987642
Q ss_pred ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc--cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
.....+|+++.|++ +++..++++.|+++++.|-.+ ....++++.....-..++++....++++|++||.|++|
T Consensus 180 ----Dy~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 180 ----DYFGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred ----hhcCCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEE
Confidence 23447899999999 899999999999999999764 45667777666777788899999999999999999999
Q ss_pred eCCCCC
Q 005352 557 NCIGHE 562 (701)
Q Consensus 557 d~~~~~ 562 (701)
|+.+..
T Consensus 255 dLvd~~ 260 (307)
T KOG0316|consen 255 DLVDET 260 (307)
T ss_pred Eeccce
Confidence 998876
No 35
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=4.7e-31 Score=257.71 Aligned_cols=283 Identities=16% Similarity=0.281 Sum_probs=232.0
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
-+-+|..|.|.|+|+.|++|+..|.+.+|+...-.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--------------------------------------------- 129 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--------------------------------------------- 129 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceee---------------------------------------------
Confidence 34589999999999999999999999999963211
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCC
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVD 406 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~ 406 (701)
.-..++.|...|+++.|++++ ++++|+.+|.|++|+..-........ |...|++++|+| +
T Consensus 130 -----------------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSp-n 191 (464)
T KOG0284|consen 130 -----------------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSP-N 191 (464)
T ss_pred -----------------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCC-C
Confidence 011246799999999999999 99999999999999986554443344 558999999999 8
Q ss_pred CCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 407 DNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
+..|++++.||+|+|||....+.- .+.+|.-.|.++.|+|....+++|+.|..|++||.+++.+... ...|
T Consensus 192 DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t--------lh~H 263 (464)
T KOG0284|consen 192 DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT--------LHGH 263 (464)
T ss_pred CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh--------hhhc
Confidence 899999999999999999876543 4567888999999999999999999999999999999887543 3446
Q ss_pred CCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCCCC
Q 005352 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSD-GKHIVSAGEDSNVYMWNCIGHEEP 564 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~sgs~Dg~I~iWd~~~~~~~ 564 (701)
...|..+.|+| ++++|++++.|..++++|++.....+....|...|+++.|+|- ..+|.+|+.||.|..|.+...++
T Consensus 264 KntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p- 341 (464)
T KOG0284|consen 264 KNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP- 341 (464)
T ss_pred cceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccc-
Confidence 68899999999 6799999999999999999977777777779999999999994 56888999999999999874331
Q ss_pred CccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCcc
Q 005352 565 AHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEK 642 (701)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~ 642 (701)
+..++. .+...+..++|.| +|+.|.+++.|+++++|....
T Consensus 342 -------~~~i~~---------------------------AHd~~iwsl~~hP----lGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 342 -------LGEIPP---------------------------AHDGEIWSLAYHP----LGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred -------ccCCCc---------------------------ccccceeeeeccc----cceeEeecCCCcceeeeccCC
Confidence 111111 1234456677777 488888889999999987543
No 36
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.3e-29 Score=271.31 Aligned_cols=248 Identities=30% Similarity=0.514 Sum_probs=207.8
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
|...|.++.|+++|++|++++.|+.+++|+......
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------------------------- 193 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------------------------- 193 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------------------------------
Confidence 478999999999999999999999999999855431
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEEC-CCCeeeeeec-CCCCeEEEEEeeC
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRV-GNDHCLRVFP-HSNYVTCVHFNPV 405 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~-~~~~~~~~~~-h~~~V~~l~f~p~ 405 (701)
...+.+.+|...|.+++|+|++ ++++++.|++|+|||+ ..+.+++++. |...|++++|+|
T Consensus 194 ----------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p- 256 (456)
T KOG0266|consen 194 ----------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP- 256 (456)
T ss_pred ----------------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-
Confidence 1233447899999999999999 9999999999999999 5558888886 999999999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
.++++++|+.|++|+|||+++++++ .+..|.+.|++++|+++++.|++++.|+.|++||+.++.... .........
T Consensus 257 ~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~~~~~~ 333 (456)
T KOG0266|consen 257 DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLC---LKLLSGAEN 333 (456)
T ss_pred CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceee---eecccCCCC
Confidence 7799999999999999999998887 556788999999999999999999999999999999987430 011111222
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCC---CeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSG---NQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~---~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.. .++.++|+| ++.++++++.|+.+++||+...........|.. .+.+...++.+.++++|+.|+.|++|++.++
T Consensus 334 ~~-~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 334 SA-PVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred CC-ceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 22 799999999 899999999999999999986554444333444 4445556789999999999999999999986
Q ss_pred C
Q 005352 562 E 562 (701)
Q Consensus 562 ~ 562 (701)
.
T Consensus 412 ~ 412 (456)
T KOG0266|consen 412 G 412 (456)
T ss_pred c
Confidence 5
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=4.3e-30 Score=246.77 Aligned_cols=280 Identities=19% Similarity=0.318 Sum_probs=233.5
Q ss_pred cccCcce--eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~--~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|.+-+. ++.+.++.+++|+.|++++|||+...... ..+.||...|..+++|+-..||++++.|+.|+.||
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk-------ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK-------LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE-------EeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 3444443 45566788999999999999987654332 35788999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
++.++ .++.+.||-..|.
T Consensus 222 Le~nk--------------------------------------------------------------vIR~YhGHlS~V~ 239 (460)
T KOG0285|consen 222 LEYNK--------------------------------------------------------------VIRHYHGHLSGVY 239 (460)
T ss_pred chhhh--------------------------------------------------------------hHHHhccccceeE
Confidence 98874 4556789999999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecC
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDI 435 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~ 435 (701)
|++.+|.- .|++|+.|.+++|||+++...+..+. |..+|..+.+.| .+..+++|+.|++|++||++.++.. ....|
T Consensus 240 ~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 240 CLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHH 318 (460)
T ss_pred EEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecc
Confidence 99999987 99999999999999999999999987 999999999999 6678999999999999999998766 66678
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...+.+++.+|....+++++.| .++-|++..+.+... ...|...|+.+..+. ..++++|+.+|.+.+||
T Consensus 319 kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n--------lsgh~~iintl~~ns--D~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN--------LSGHNAIINTLSVNS--DGVLVSGGDNGSIMFWD 387 (460)
T ss_pred cceeeEEecCCchhhhhccCCc-cceeccCCccchhhc--------cccccceeeeeeecc--CceEEEcCCceEEEEEe
Confidence 8999999999999888888875 589999988765432 344556788888876 57899999999999999
Q ss_pred CCccceeeec--------ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 516 GPNVIGKYKG--------LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 516 ~~~~~~~~~~--------~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.+....-..+ ......|.+.+|...|..|+||..|.+|++|.-+..
T Consensus 388 wksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 388 WKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred cCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 8753322111 124567899999999999999999999999985543
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.2e-29 Score=256.40 Aligned_cols=385 Identities=18% Similarity=0.225 Sum_probs=279.5
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.++++.+..++++-.+|.|.||++.+... .+.+.-..-+|.+.+|-+..+++++|+.|..|+||+..+.++
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnyetqtm-------VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek-- 89 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYETQTM-------VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK-- 89 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEeccccee-------eeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee--
Confidence 34566677888899999999999875432 234555788999999999999999999999999999998853
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
++.|..|.+-|.+|+.+|..
T Consensus 90 ------------------------------------------------------------V~~FeAH~DyIR~iavHPt~ 109 (794)
T KOG0276|consen 90 ------------------------------------------------------------VKTFEAHSDYIRSIAVHPTL 109 (794)
T ss_pred ------------------------------------------------------------eEEeeccccceeeeeecCCC
Confidence 56678899999999999999
Q ss_pred -eEEEEECCCcEEEEECCCC-eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEE
Q 005352 367 -YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAV 442 (701)
Q Consensus 367 -~l~s~s~dg~I~iWd~~~~-~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i 442 (701)
+++|+|.|-+|++||.+.. .|.++|. |..+|.+++|+|.|.+.|++++.|++|+||.+.+..+. .+.+|...|+++
T Consensus 110 P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~V 189 (794)
T KOG0276|consen 110 PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCV 189 (794)
T ss_pred CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceE
Confidence 9999999999999999865 6778886 99999999999999999999999999999999877655 666899999999
Q ss_pred EEeeCC--CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc
Q 005352 443 CYRPDG--QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI 520 (701)
Q Consensus 443 ~~sp~g--~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~ 520 (701)
+|-+-| .+|++|+.|..+++||..+..+... ...|...|..+.|+| .-.++++|+.||+++||+..+..
T Consensus 190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T--------LeGHt~Nvs~v~fhp-~lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT--------LEGHTNNVSFVFFHP-ELPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred EeccCCCcceEEecCCCceEEEeecchHHHHHH--------hhcccccceEEEecC-CCcEEEEecCCccEEEecCccee
Confidence 998854 6999999999999999998765432 456778899999999 78899999999999999988766
Q ss_pred eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccc--cccccccccccCCceEEecCCCCCCC-CCC
Q 005352 521 GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQ--AKTIRSLERFTTNASIAIPWCGLKCG-NAE 597 (701)
Q Consensus 521 ~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~ 597 (701)
..-...-....+.+++-.+.++.++.|...|.|.+ ++...++..... .+.+.+. .+.+.++........ ...
T Consensus 261 lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~----~~ei~~~~~ks~~~~~ev~ 335 (794)
T KOG0276|consen 261 LEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAV----HSEIQAVNLKSVGAQKEVT 335 (794)
T ss_pred hhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEc----CceeeeeeceeccCccccc
Confidence 55555446788999999998888898887776544 444444221111 1111111 111111111111000 001
Q ss_pred CC--Ccccc----CCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhccccccc
Q 005352 598 KE--PQLHV----SDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTT 671 (701)
Q Consensus 598 ~~--~~~~~----~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (701)
.+ ..+.. ...-.+..|+.+| +.+|++...||...++..-... .+. .+..+...
T Consensus 336 DgErL~LsvKeLgs~eiyPq~L~hsP-----NGrfV~VcgdGEyiIyTala~R-nK~---------------fG~~~eFv 394 (794)
T KOG0276|consen 336 DGERLPLSVKELGSVEIYPQTLAHSP-----NGRFVVVCGDGEYIIYTALALR-NKA---------------FGSGLEFV 394 (794)
T ss_pred CCccccchhhhccccccchHHhccCC-----CCcEEEEecCccEEEEEeeehh-hcc---------------cccceeEE
Confidence 01 11111 1122244566677 4567777788887665521111 011 12344445
Q ss_pred ccCCCccEEEEecCCCeEeEEeecC
Q 005352 672 SSHAWGLVIVTAGWDGRIRSFLNYG 696 (701)
Q Consensus 672 ~~~~~g~~ivTgg~DG~Irvw~~~g 696 (701)
+.++ ....+.--.+|.|++|+||-
T Consensus 395 w~~d-sne~avRes~~~vki~knfk 418 (794)
T KOG0276|consen 395 WAAD-SNEFAVRESNGNVKIFKNFK 418 (794)
T ss_pred EcCC-CCeEEEEecCCceEEEecce
Confidence 5555 66677777788888888874
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.2e-28 Score=251.43 Aligned_cols=284 Identities=26% Similarity=0.485 Sum_probs=230.5
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+++|.++|++++|+|++++|++++.||.|++|++.+++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~---------------------------------------- 42 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---------------------------------------- 42 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----------------------------------------
Confidence 3567899999999999999999999999999999987653
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
....+..|...+..+.|++++ ++++++.++.|++||+.+++.+..+. |...+.++.
T Consensus 43 ----------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~ 100 (289)
T cd00200 43 ----------------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA 100 (289)
T ss_pred ----------------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEE
Confidence 233456788889999999998 99999999999999999887777665 777999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
|+| ++.++++++.++.|++||+.+++..... .+...+.+++|+|++.++++++.++.+++||++..+.....
T Consensus 101 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~------ 173 (289)
T cd00200 101 FSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL------ 173 (289)
T ss_pred EcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeE------
Confidence 999 7888888888999999999977766444 47788999999999999988888999999999866543221
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
..+...+.++.|+| ++..+++++.++.|++||............+...+.+++|+|++.++++++.||.|++|++.+
T Consensus 174 --~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 174 --TGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred --ecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 13446799999999 677888888899999999986554444435778999999999999999998899999999886
Q ss_pred CCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCC
Q 005352 561 HEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWP 639 (701)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~ 639 (701)
++... .+. .....+..++++|+ +..+++++.|+.+++|+
T Consensus 251 ~~~~~--------~~~----------------------------~~~~~i~~~~~~~~----~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 251 GECVQ--------TLS----------------------------GHTNSVTSLAWSPD----GKRLASGSADGTIRIWD 289 (289)
T ss_pred ceeEE--------Ecc----------------------------ccCCcEEEEEECCC----CCEEEEecCCCeEEecC
Confidence 54210 000 11223555677775 56788889999999995
No 40
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=6.8e-29 Score=289.78 Aligned_cols=326 Identities=16% Similarity=0.246 Sum_probs=240.3
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEe
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFT 301 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~ 301 (701)
+|.+++|+...... ........+.+|.+.|.+++|+|+|++||||+.|+.|+||++....... ..
T Consensus 457 ~gl~~~~~~~~~~~--~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~-~~------------ 521 (793)
T PLN00181 457 EGLCKYLSFSKLRV--KADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG-RD------------ 521 (793)
T ss_pred hhhhhhhcccceEE--EEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc-cc------------
Confidence 56677777653322 2222334567799999999999999999999999999999975421000 00
Q ss_pred eccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC-C-eEEEEECCCcEEE
Q 005352 302 VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN-N-YLLSASIDKTVRL 379 (701)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~-~l~s~s~dg~I~i 379 (701)
...+...+. +...|.+++|++. + +|++++.||+|++
T Consensus 522 -----------------------------------------~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 522 -----------------------------------------IHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred -----------------------------------------cccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 001122223 3457899999885 4 9999999999999
Q ss_pred EECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEe-eCCCeEEEEecC
Q 005352 380 WRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYR-PDGQGGIVGSMM 457 (701)
Q Consensus 380 Wd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~s-p~g~~l~~gs~d 457 (701)
||+.+++.+..+. |...|++++|+|.++.+|++|+.|++|++||++++..+....+...+.++.|. +++..|++|+.|
T Consensus 560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCC
Confidence 9999998888875 99999999999757889999999999999999998888766667789999995 579999999999
Q ss_pred CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc------ceeeecccCCCC
Q 005352 458 GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------IGKYKGLRRSGN 531 (701)
Q Consensus 458 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~------~~~~~~~~~~~~ 531 (701)
|.|++||++...... .....|...|.++.|. ++.++++++.|+.|++||+... ........|...
T Consensus 640 g~I~iwD~~~~~~~~-------~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 640 HKVYYYDLRNPKLPL-------CTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV 710 (793)
T ss_pred CeEEEEECCCCCccc-------eEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC
Confidence 999999998754211 0123466789999996 4678999999999999998632 122233347888
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCC
Q 005352 532 QLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPE 611 (701)
Q Consensus 532 v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (701)
+..++|+|++.+|++|+.|+.|++|+........ ++...... .+.+. ........+.
T Consensus 711 i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~--------s~~~~~~~-----~~~~~----------~~~~~~~~V~ 767 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVL--------SYKFKTID-----PVSGL----------EVDDASQFIS 767 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceE--------EEecccCC-----ccccc----------ccCCCCcEEE
Confidence 9999999999999999999999999976553110 00000000 00000 0001123466
Q ss_pred ccccCCCccccCccccccCCCCcccCCCC
Q 005352 612 NLAFAPARFSLGQEYVFESFPKGCATWPE 640 (701)
Q Consensus 612 ~l~~sp~~~~~~~~~~~~s~d~~~~~W~~ 640 (701)
.++|+|+ +..+++++.+|.+++|+.
T Consensus 768 ~v~ws~~----~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 768 SVCWRGQ----SSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEcCC----CCeEEEecCCCcEEEEec
Confidence 7888886 678899999999999973
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.5e-28 Score=228.56 Aligned_cols=292 Identities=16% Similarity=0.246 Sum_probs=225.5
Q ss_pred CeEEEcCCccCeEEEEEecC-C-eEEEEECCCcEEEEECCC---Ceeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCc
Q 005352 346 PLHEFHGHSGEILDLSWSKN-N-YLLSASIDKTVRLWRVGN---DHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGK 418 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~s~~-~-~l~s~s~dg~I~iWd~~~---~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~ 418 (701)
.++.+.+|++.+..++|+|- | .|++++.|+.|++|+... -.|...+. |+..|+.++|+| .+++|++++.|.+
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t 84 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDAT 84 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccce
Confidence 45678899999999999998 6 899999999999999985 34554453 999999999999 9999999999999
Q ss_pred EEEEeCCCCc--EE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 419 VRIWAVLSCH--VV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 419 v~iwd~~~~~--~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
+.||.-..+. ++ .+.+|...|.+++|+++|++||+++.|..|-||.+..... +........|...|..+.|+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-----fec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-----FECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-----EEEEeeeccccccccEEEEc
Confidence 9999776553 34 5668999999999999999999999999999999984332 23344456677899999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCC---ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccc
Q 005352 496 PQDSSKVMVSCADSQVRILQGP---NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTI 572 (701)
Q Consensus 496 p~~~~~l~~~s~dg~I~iwd~~---~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~ 572 (701)
| ...+|++++.|++|++|+-. ..........|...|.+++|++.|..|++++.|++|+||...+.
T Consensus 160 P-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----------- 227 (312)
T KOG0645|consen 160 P-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----------- 227 (312)
T ss_pred C-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----------
Confidence 9 78999999999999999754 33445555558889999999999999999999999999986532
Q ss_pred cccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCcccccc
Q 005352 573 RSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSA 652 (701)
Q Consensus 573 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~ 652 (701)
+...++.....++|+ ...+++++.|..++++.....+.-..+
T Consensus 228 --~~~~~sr~~Y~v~W~---------------------------------~~~IaS~ggD~~i~lf~~s~~~d~p~~--- 269 (312)
T KOG0645|consen 228 --LSGMHSRALYDVPWD---------------------------------NGVIASGGGDDAIRLFKESDSPDEPSW--- 269 (312)
T ss_pred --cchhcccceEeeeec---------------------------------ccceEeccCCCEEEEEEecCCCCCchH---
Confidence 233344445555555 123445677888887776644321111
Q ss_pred ccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 653 SALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
.......+.|...|+++...+.-...|++||.||.|++|..
T Consensus 270 -~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 270 -NLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred -HHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 01111223345577777777744678999999999999975
No 42
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.2e-30 Score=250.39 Aligned_cols=288 Identities=17% Similarity=0.215 Sum_probs=234.6
Q ss_pred cccCcc--eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~--~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
+|..|+ ..++.++.+++++++|.+..||+...... +....++.+|..+|..+.||||.+||++|+.|..+++||
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 344454 46788999999999999999999754332 223356889999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.++.....+. .+|...+.
T Consensus 298 v~tgd~~~~y~-------------------------------------------------------------~~~~~S~~ 316 (519)
T KOG0293|consen 298 VDTGDLRHLYP-------------------------------------------------------------SGLGFSVS 316 (519)
T ss_pred CCcchhhhhcc-------------------------------------------------------------cCcCCCcc
Confidence 99987443321 23567899
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 435 (701)
+++|.|++ .+++|+.|++|..||+.... +.... ....|.+++..+ |++++++.+.|..|++|+..+.........
T Consensus 317 sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise 394 (519)
T KOG0293|consen 317 SCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISE 394 (519)
T ss_pred eeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccccc
Confidence 99999999 99999999999999986553 22222 335699999999 999999999999999999988777767788
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
..+|++++++.+++++++.-.+..+++||+..+.+..... +++ ....+..-+|--.+..++++|+.|++|+||+
T Consensus 395 ~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~----Ghk--q~~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 395 EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF----GHK--QGHFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh----ccc--ccceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 8999999999999999999999999999999765432211 111 1233455566555678999999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCC
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDG-KHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~~~ 561 (701)
..+........+|...|++++|+|.. .++|+||.||+|+||.....
T Consensus 469 r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99888877777899999999999965 67899999999999987654
No 43
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=6e-31 Score=262.51 Aligned_cols=295 Identities=20% Similarity=0.333 Sum_probs=243.0
Q ss_pred cCCCeEEEcCCccCeEEEEEec-CC-eEEEEECCCcEEEEECCC-Ceeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCc
Q 005352 343 LEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGN-DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGK 418 (701)
Q Consensus 343 ~~~~~~~~~~h~~~I~~l~~s~-~~-~l~s~s~dg~I~iWd~~~-~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~ 418 (701)
..+.++.+.||+..|+++.|.| .+ +|++++.|+.|+||++.. +.|+++|. |..+|..++|++ ++..|++++.|+.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRF 281 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeeccee
Confidence 3467889999999999999999 55 999999999999999987 89999987 999999999999 9999999999999
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 419 VRIWAVLSCHVVDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 419 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
|++||+.+|+++..+.....++++.|+|++ +.+++|+.|+.|+.||+++++...+ ...|...|..+.|.+
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe--------Yd~hLg~i~~i~F~~- 352 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE--------YDRHLGAILDITFVD- 352 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH--------HHhhhhheeeeEEcc-
Confidence 999999999999999999999999999998 8899999999999999999875432 345667899999999
Q ss_pred CCCEEEEEECCCcEEEEeCCcccee-eecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccc
Q 005352 498 DSSKVMVSCADSQVRILQGPNVIGK-YKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE 576 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 576 (701)
++..+++++.|+.++||+....... +....+.....++..+|++.+++.-+.|+.|.++.+...-... ..+....+
T Consensus 353 ~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n--kkK~feGh- 429 (503)
T KOG0282|consen 353 EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN--KKKRFEGH- 429 (503)
T ss_pred CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC--Hhhhhcce-
Confidence 7999999999999999998754332 2223345567789999999999999999999999965543111 00000000
Q ss_pred cccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccch
Q 005352 577 RFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALH 656 (701)
Q Consensus 577 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~ 656 (701)
....-...+.|||+ +..++++..+|.+.+|+-.+-..+..+.+|
T Consensus 430 ----------------------------~vaGys~~v~fSpD----G~~l~SGdsdG~v~~wdwkt~kl~~~lkah---- 473 (503)
T KOG0282|consen 430 ----------------------------SVAGYSCQVDFSPD----GRTLCSGDSDGKVNFWDWKTTKLVSKLKAH---- 473 (503)
T ss_pred ----------------------------eccCceeeEEEcCC----CCeEEeecCCccEEEeechhhhhhhccccC----
Confidence 00112334678998 788899999999999999988888888777
Q ss_pred hhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 657 KSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
...|..+.+.+--...++|+||||.|++|.
T Consensus 474 -------~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 474 -------DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -------CcceEEEEecCCCcceeEecccCceeEecC
Confidence 456777766555567899999999999995
No 44
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.7e-29 Score=244.85 Aligned_cols=285 Identities=18% Similarity=0.248 Sum_probs=237.5
Q ss_pred cccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCC---CEEEEEeCCCcEEEE
Q 005352 201 DKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG---QYLASAGDDGVVRLW 277 (701)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~Lasgs~Dg~I~iW 277 (701)
-|+.-+.++...+..+++|+.||.++||+...+.. ..+.||.++|.+++|.-.. ..+++||.|.++++|
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~--------~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSI--------KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecCCceE--------EEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 45666667777788999999999999999754332 3577899999988885433 359999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
.++.+.... +.++...||...|
T Consensus 175 ~~~~~~~~~----------------------------------------------------------~~~~~~~GHk~~V 196 (423)
T KOG0313|consen 175 KWNVGENKV----------------------------------------------------------KALKVCRGHKRSV 196 (423)
T ss_pred EecCchhhh----------------------------------------------------------hHHhHhcccccce
Confidence 998765221 2233345999999
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCC-------------------------Ceeeeee-cCCCCeEEEEEeeCCCCEE
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGN-------------------------DHCLRVF-PHSNYVTCVHFNPVDDNYF 410 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~-------------------------~~~~~~~-~h~~~V~~l~f~p~~~~~l 410 (701)
-+++..+++ .+++|+.|.+|+||+..+ +.++.++ .|..+|.++.|++ ...+
T Consensus 197 ~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~ 274 (423)
T KOG0313|consen 197 DSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVI 274 (423)
T ss_pred eEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCce
Confidence 999999999 999999999999999321 1123333 3999999999985 6789
Q ss_pred EEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCee
Q 005352 411 ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 411 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
++++.|.+|+.||+.++..+........++++.++|..++|++|+.|..+++||.+++.-.. +......|.+.|.
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~-----v~~s~~gH~nwVs 349 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV-----VSQSLIGHKNWVS 349 (423)
T ss_pred EeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCce-----eEEeeecchhhhh
Confidence 99999999999999999999888889999999999999999999999999999999875332 2222456778999
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEeCCccc-eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 491 GFQFLPQDSSKVMVSCADSQVRILQGPNVI-GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
++.|+|.+...|++++.|+++++||++... ..|...+|...|.++.|. ++.+|++|+.|.+|+|+.-.
T Consensus 350 svkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 350 SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred heecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999999999999999999999999999777 778888899999999996 56799999999999999743
No 45
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1e-28 Score=245.52 Aligned_cols=275 Identities=20% Similarity=0.348 Sum_probs=233.6
Q ss_pred CcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec
Q 005352 204 GEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281 (701)
Q Consensus 204 ~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 281 (701)
..++++..+ +..+++|..+|.++||+... .+. ..|..|+++|.+++|+..|.||++++.|+++.+||..+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G---~l~-----~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG---NLI-----STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCc---hhh-----hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence 456667666 77899999999999998543 222 23556999999999999999999999999999999988
Q ss_pred CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE
Q 005352 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (701)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 361 (701)
+...+. +.-|..+-.++.
T Consensus 308 g~~~q~--------------------------------------------------------------f~~~s~~~lDVd 325 (524)
T KOG0273|consen 308 GTVKQQ--------------------------------------------------------------FEFHSAPALDVD 325 (524)
T ss_pred ceEEEe--------------------------------------------------------------eeeccCCccceE
Confidence 864433 334666667899
Q ss_pred EecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcE
Q 005352 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIV 439 (701)
Q Consensus 362 ~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i 439 (701)
|..+..|++++.|+.|+|+.+....++.++. |.+.|.++.|+| .+.+|++++.|++++||++...... .+..|...|
T Consensus 326 W~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei 404 (524)
T KOG0273|consen 326 WQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEI 404 (524)
T ss_pred EecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhccce
Confidence 9888899999999999999999999998887 999999999999 9999999999999999998766655 567788899
Q ss_pred EEEEEeeCC---------CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc
Q 005352 440 TAVCYRPDG---------QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (701)
Q Consensus 440 ~~i~~sp~g---------~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~ 510 (701)
..+.|+|.| ..+++++.|++|++||+..+.+... ...|..+|.+++|+| ++.++++|+.||.
T Consensus 405 ~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~--------f~kH~~pVysvafS~-~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 405 YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT--------LMKHQEPVYSVAFSP-NGRYLASGSLDGC 475 (524)
T ss_pred eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe--------eccCCCceEEEEecC-CCcEEEecCCCCe
Confidence 999999964 4689999999999999998876532 345778999999999 8999999999999
Q ss_pred EEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 511 VRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 511 I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
|.||+.+.... ++.....+.|..++|+.+|.+|..+-.|+.+++-|+.
T Consensus 476 V~iws~~~~~l-~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 476 VHIWSTKTGKL-VKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEeccccchhe-eEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999886443 3334466779999999999999999999999998874
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=5.9e-28 Score=246.36 Aligned_cols=278 Identities=23% Similarity=0.420 Sum_probs=229.4
Q ss_pred cccCcceeeecCc--cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRLNE--EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~~~--~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|...+.++.+++ +.+++++.++.+++|+..... ....+.+|...+..+.|+|++++|++++.||.|++|+
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 3555666655544 677788889999999986443 2235677999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+++ .+..+..|...|.
T Consensus 80 ~~~~~--------------------------------------------------------------~~~~~~~~~~~i~ 97 (289)
T cd00200 80 LETGE--------------------------------------------------------------CVRTLTGHTSYVS 97 (289)
T ss_pred cCccc--------------------------------------------------------------ceEEEeccCCcEE
Confidence 97652 2344567888999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecC
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDI 435 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~ 435 (701)
++.|++++ ++++++.++.|++||+.+++....+. |...+.+++|+| ++.++++++.++.|++||+++++.+. ...+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 176 (289)
T cd00200 98 SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176 (289)
T ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEecC
Confidence 99999998 77777779999999999888888877 888999999999 78888888889999999999777664 4456
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...+.+++|+|+++.+++++.++.+++||++..+.... ...+...+.++.|+| ++.++++++.++.|++|+
T Consensus 177 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--------~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~ 247 (289)
T cd00200 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT--------LRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWD 247 (289)
T ss_pred ccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc--------hhhcCCceEEEEEcC-CCcEEEEEcCCCcEEEEE
Confidence 67899999999999999999999999999987554321 123456899999999 477888887799999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
............|...+.+++|+|++.+|++++.||.|++|+
T Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 248 LRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 986555555446788999999999999999999999999996
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=6.9e-28 Score=281.34 Aligned_cols=290 Identities=16% Similarity=0.231 Sum_probs=223.4
Q ss_pred ccCcceeee--cCccccccccccceEEEEEccCccchhhhc-ccCceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 005352 202 KQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSAL-YKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLW 277 (701)
Q Consensus 202 ~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iW 277 (701)
|...+.++. ++++.+++++.|+.|+||+........... .....+. +...|.+++|++ ++.+||+++.||+|+||
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 444455544 456678899999999999975321111100 1111233 456899999987 47899999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
|+.+++ .+..+.+|.+.|
T Consensus 561 d~~~~~--------------------------------------------------------------~~~~~~~H~~~V 578 (793)
T PLN00181 561 DVARSQ--------------------------------------------------------------LVTEMKEHEKRV 578 (793)
T ss_pred ECCCCe--------------------------------------------------------------EEEEecCCCCCE
Confidence 997764 234567899999
Q ss_pred EEEEEec-CC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc--EEEEe
Q 005352 358 LDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWV 433 (701)
Q Consensus 358 ~~l~~s~-~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~ 433 (701)
++++|+| ++ +|++|+.|++|++||+.++.++..+.+...|.++.|++.++.+|++|+.||.|++||+++.+ .....
T Consensus 579 ~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~ 658 (793)
T PLN00181 579 WSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658 (793)
T ss_pred EEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec
Confidence 9999997 55 99999999999999999999998888778899999976579999999999999999998765 33566
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
.|...|.++.|. ++..|++++.|+.|++||++........ ........|...+..+.|+| ++.+|++|+.|+.|++
T Consensus 659 ~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~--~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~i 734 (793)
T PLN00181 659 GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINE--TPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFV 734 (793)
T ss_pred CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCC--cceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEE
Confidence 788999999997 7889999999999999999753210000 00111334567788999999 6789999999999999
Q ss_pred EeCCcccee--ee-----------cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 514 LQGPNVIGK--YK-----------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 514 wd~~~~~~~--~~-----------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
|+....... +. ...+...|.+++|+|++.+|++|+.||.|+||++
T Consensus 735 w~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 735 YHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 997543211 11 1224456999999999999999999999999986
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.8e-28 Score=248.56 Aligned_cols=274 Identities=14% Similarity=0.268 Sum_probs=225.4
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.++.|...|.++.|+|....++++-..|.|.|||.++...+..+.
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe----------------------------------- 52 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE----------------------------------- 52 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee-----------------------------------
Confidence 456699999999999999999999999999999999886554443
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f 402 (701)
-..-+|.+..|-... .+++|+.|..|+||+.++++.+..|. |.++|+|++.
T Consensus 53 ---------------------------V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iav 105 (794)
T KOG0276|consen 53 ---------------------------VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAV 105 (794)
T ss_pred ---------------------------ecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeee
Confidence 234467777777665 99999999999999999999999998 9999999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcE--EEEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
+| ...++++++.|-+|++||....=. ..+.+|..-|++++|+| |.+.+++++-|++|++|.+........
T Consensus 106 HP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT------ 178 (794)
T KOG0276|consen 106 HP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT------ 178 (794)
T ss_pred cC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee------
Confidence 99 888999999999999999987632 25668999999999999 678999999999999999987654332
Q ss_pred cccCCCCCCeeEEEEecC-CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 480 SKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~-~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
...|...|+++.+-+. +..+|++|+.|..|+|||..+..+.....+|...|..++|+|.-..|+||++||+++||+-
T Consensus 179 --l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 179 --LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred --eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecC
Confidence 3357788999999883 3469999999999999999987777766779999999999999999999999999999998
Q ss_pred CCCCCCCc--cccccccccccccCCceEEecCC
Q 005352 559 IGHEEPAH--DQAKTIRSLERFTTNASIAIPWC 589 (701)
Q Consensus 559 ~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~ 589 (701)
.+-+.... .....++.+.....+..+++...
T Consensus 257 ~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 257 KTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred cceehhhhhhcCCceEEEEeecCCCCeEEEecc
Confidence 87653221 12334444544444444554444
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.4e-28 Score=258.61 Aligned_cols=278 Identities=17% Similarity=0.329 Sum_probs=233.5
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.++++....++++-..|.|++||++-... ...+..|.|+|..+.|+|.+.+++|||.|-.|+||+..+.+
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~tl-------i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr--- 84 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGTL-------IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR--- 84 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhhH-------HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce---
Confidence 45666667888899999999999865321 23467799999999999999999999999999999998764
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
.+.++.||-+-|..+.|++.-
T Consensus 85 -----------------------------------------------------------clftL~GHlDYVRt~~FHhey 105 (1202)
T KOG0292|consen 85 -----------------------------------------------------------CLFTLLGHLDYVRTVFFHHEY 105 (1202)
T ss_pred -----------------------------------------------------------ehhhhccccceeEEeeccCCC
Confidence 455678999999999999998
Q ss_pred -eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc----------------
Q 005352 367 -YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH---------------- 428 (701)
Q Consensus 367 -~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~---------------- 428 (701)
.++++|.|.+|+||+..+++|+..+. |+.+|.|.+|+| ...++++++.|.+|||||+..-+
T Consensus 106 PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~ 184 (1202)
T KOG0292|consen 106 PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ 184 (1202)
T ss_pred ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence 99999999999999999999999987 999999999999 89999999999999999984310
Q ss_pred ------------EE--EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 429 ------------VV--DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 429 ------------~~--~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
++ ...+|...|+.++|+|.-..+++|+.|..|++|.++..+.- .. .....|.+.|+++-|
T Consensus 185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW-----Ev-DtcrgH~nnVssvlf 258 (1202)
T KOG0292|consen 185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-----EV-DTCRGHYNNVSSVLF 258 (1202)
T ss_pred ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce-----ee-hhhhcccCCcceEEe
Confidence 11 13357788999999999999999999999999999765421 11 124678899999999
Q ss_pred ecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 495 LPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+| ..+++++.+.|+.|+|||+..........+.......++-+|..++++.| .|+-+.+|.++...
T Consensus 259 hp-~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleREr 324 (1202)
T KOG0292|consen 259 HP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERER 324 (1202)
T ss_pred cC-ccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcccC
Confidence 99 78999999999999999998766665555577889999999999877766 46667888887443
No 50
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.2e-27 Score=249.91 Aligned_cols=424 Identities=16% Similarity=0.242 Sum_probs=297.9
Q ss_pred cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 214 ~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
.+.++++....|.+||++....+..-.. ..-+..|+|+.-+|+..+||.|-.||.|+||+..+...+..+..+..
T Consensus 34 Gr~va~~a~E~vn~WdlRtge~~~~l~~-----~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~ 108 (888)
T KOG0306|consen 34 GRAVAVSALEQVNIWDLRTGEIEKKLIL-----LKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKA 108 (888)
T ss_pred CcEEEEeccccEeEEeeecchhhhhhhh-----hcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeeccccc
Confidence 5566677888999999987743322111 12346899999999999999999999999999988766666655554
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s 372 (701)
.+.++.| +..+..+. .++.+..+++++.- .+.-+..+.||++.|+..-|..+. .+++.+
T Consensus 109 AVt~l~f-------------d~~G~rla---SGskDt~IIvwDlV----~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~s 168 (888)
T KOG0306|consen 109 AVTTLKF-------------DKIGTRLA---SGSKDTDIIVWDLV----GEEGLFRLRGHKDSITQALFLNGDSFLVSVS 168 (888)
T ss_pred ceEEEEE-------------cccCceEe---ecCCCccEEEEEec----cceeeEEeecchHHHhHHhccCCCeEEEEec
Confidence 4444333 33322222 23334444444321 234567889999999999998855 999999
Q ss_pred CCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-------------------------
Q 005352 373 IDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS------------------------- 426 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~------------------------- 426 (701)
.|+.|++||+.+..|..+.- |.+.|..+++.+ +.+++++.|+.+++|++..
T Consensus 169 KDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~ 245 (888)
T KOG0306|consen 169 KDSMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKG 245 (888)
T ss_pred cCceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCC
Confidence 99999999999999998764 999999999975 7899999999999998700
Q ss_pred --------------------------------------------------------------------------------
Q 005352 427 -------------------------------------------------------------------------------- 426 (701)
Q Consensus 427 -------------------------------------------------------------------------------- 426 (701)
T Consensus 246 R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks 325 (888)
T KOG0306|consen 246 REINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKS 325 (888)
T ss_pred ceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeE
Confidence
Q ss_pred -------CcE-------------------------------EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC
Q 005352 427 -------CHV-------------------------------VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 427 -------~~~-------------------------------~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
+.. +...+|+..|.+++++.+...+++|+ .+.+++|+..+.
T Consensus 326 ~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~ 404 (888)
T KOG0306|consen 326 FDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL 404 (888)
T ss_pred EEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc
Confidence 000 11223455577788887765555554 578999999987
Q ss_pred eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe
Q 005352 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs 548 (701)
++... -.+..+.+..|.| ++.++++|...|.+.+||+......-....|.+.|.+++.+||+..++|||
T Consensus 405 kciRT----------i~~~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~s 473 (888)
T KOG0306|consen 405 KCIRT----------ITCGYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGS 473 (888)
T ss_pred ceeEE----------eccccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEec
Confidence 76532 2234688899999 789999999999999999876554444446999999999999999999999
Q ss_pred CCCcEEEEeCCCCCC-CCcc----ccccccccc---------cccCCceEEecCCCCC----CCCCCCCCccccCCCCCC
Q 005352 549 EDSNVYMWNCIGHEE-PAHD----QAKTIRSLE---------RFTTNASIAIPWCGLK----CGNAEKEPQLHVSDDDSP 610 (701)
Q Consensus 549 ~Dg~I~iWd~~~~~~-~~~~----~~~~~~~~~---------~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~ 610 (701)
.|.+|++|++.--.. +... ..+..+.++ ..+....+|+..-..+ +-+..+-....+.+.-++
T Consensus 474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV 553 (888)
T KOG0306|consen 474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPV 553 (888)
T ss_pred CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccce
Confidence 999999999753221 1111 111112222 2222222222211110 001000000112233345
Q ss_pred CccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEe
Q 005352 611 ENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIR 690 (701)
Q Consensus 611 ~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Ir 690 (701)
.++..+|+ +..++++|.|+.+++|-.+-+.+-+.+-+| ...|-++.|-+. .+++.|+|.||.||
T Consensus 554 ~smDIS~D----SklivTgSADKnVKiWGLdFGDCHKS~fAH-----------dDSvm~V~F~P~-~~~FFt~gKD~kvK 617 (888)
T KOG0306|consen 554 LSMDISPD----SKLIVTGSADKNVKIWGLDFGDCHKSFFAH-----------DDSVMSVQFLPK-THLFFTCGKDGKVK 617 (888)
T ss_pred eEEeccCC----cCeEEeccCCCceEEeccccchhhhhhhcc-----------cCceeEEEEccc-ceeEEEecCcceEE
Confidence 56667997 788999999999999999999999988777 466777777787 89999999999999
Q ss_pred EEe
Q 005352 691 SFL 693 (701)
Q Consensus 691 vw~ 693 (701)
-|+
T Consensus 618 qWD 620 (888)
T KOG0306|consen 618 QWD 620 (888)
T ss_pred eec
Confidence 994
No 51
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=230.66 Aligned_cols=319 Identities=15% Similarity=0.191 Sum_probs=247.3
Q ss_pred cccCcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|...+-+++.+ ...+++|+.|..-.||+..... . .-++.+|+..|+++.|+.+|.|||||+.+|.|+||+
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--~-----~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--F-----AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--c-----eeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 466666655544 4567789999999999876554 1 236788999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccC-CCeEEEcCCccCe
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILE-KPLHEFHGHSGEI 357 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~I 357 (701)
..++.....+...-..... +.+.+....+ +.+..++.+..| ++.+ ...+.+.||..++
T Consensus 135 ~stg~~~~~~~~e~~dieW-------------l~WHp~a~il---lAG~~DGsvWmw-----~ip~~~~~kv~~Gh~~~c 193 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEW-------------LKWHPRAHIL---LAGSTDGSVWMW-----QIPSQALCKVMSGHNSPC 193 (399)
T ss_pred cccCceEEEeecccCceEE-------------EEecccccEE---EeecCCCcEEEE-----ECCCcceeeEecCCCCCc
Confidence 9998765555322222222 2222211111 112222222222 2222 5567889999999
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD 434 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 434 (701)
++=.|.|+| .++++..||+|++||..+++++..+. ......++.++. .+..++.|..++.+++-+..+++++....
T Consensus 194 t~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 194 TCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred ccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccCCccEEEEccccceEEEecC
Confidence 999999999 99999999999999999999998886 345678899988 88999999999999999999998875544
Q ss_pred ---------CCCcEEEE---EEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 435 ---------IRQIVTAV---CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 435 ---------~~~~i~~i---~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
+...+.++ .++..-...++|+.||+|.|||+....+.. .-.|...|+.+.|.+ ..+|
T Consensus 273 ~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~---------~c~he~~V~~l~w~~--t~~l 341 (399)
T KOG0296|consen 273 GTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH---------ICEHEDGVTKLKWLN--TDYL 341 (399)
T ss_pred CCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe---------eccCCCceEEEEEcC--cchh
Confidence 22334444 444455688999999999999998765432 334557799999988 6899
Q ss_pred EEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 503 MVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
++++.+|.|+.||.++...++...+|...|.+++++|++++++|+|.|++.+|+++.
T Consensus 342 ~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 342 LTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999999888899999999999999999999999999999864
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=3.3e-29 Score=237.36 Aligned_cols=255 Identities=24% Similarity=0.447 Sum_probs=218.5
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
+.+.-+-|..|||||+||++|+.||.|.+||..+++....++..
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ------------------------------------ 254 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ------------------------------------ 254 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhh------------------------------------
Confidence 45677889999999999999999999999999998754433211
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEee
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNP 404 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p 404 (701)
....|.-|...|.|+.|+.+. .|++|+.||.|++|.+.+|.|++.|. |...|+|+.|+.
T Consensus 255 ------------------Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr 316 (508)
T KOG0275|consen 255 ------------------AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR 316 (508)
T ss_pred ------------------hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc
Confidence 112344578899999999998 99999999999999999999999997 999999999999
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC
Q 005352 405 VDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (701)
Q Consensus 405 ~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 483 (701)
++..+++++.|.+++|.-+.+++++ .+.+|..-|+...|.++|..+++++.||+|++|+..+..+..... ..
T Consensus 317 -D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk------~~ 389 (508)
T KOG0275|consen 317 -DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFK------PL 389 (508)
T ss_pred -CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhcc------CC
Confidence 9999999999999999999999987 567899999999999999999999999999999999887654332 23
Q ss_pred CCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc-ceeee-cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-IGKYK-GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 484 ~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~-~~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
....+|..+...|.++..++++...++|+|.++... ...+. +.+..+...+++.+|.|.++.+.++|+.+|.+.+.++
T Consensus 390 ~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 390 GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 355788999999989999999999999999998743 33332 3445677888999999999999999999999999988
Q ss_pred CC
Q 005352 562 EE 563 (701)
Q Consensus 562 ~~ 563 (701)
+.
T Consensus 470 ~L 471 (508)
T KOG0275|consen 470 KL 471 (508)
T ss_pred ce
Confidence 73
No 53
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=9e-28 Score=222.69 Aligned_cols=233 Identities=18% Similarity=0.317 Sum_probs=200.6
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.++||+.+++.|+|+.+|.+|.||+.|.++.||--.++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer---------------------------------------- 44 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER---------------------------------------- 44 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce----------------------------------------
Confidence 4789999999999999999999999999999998877754
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEe
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~ 403 (701)
+-++.||++.|+|+....+. +++||+.|.++++||+.+|+++..++...+|..+.|+
T Consensus 45 ----------------------lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~ 102 (327)
T KOG0643|consen 45 ----------------------LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFS 102 (327)
T ss_pred ----------------------eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeec
Confidence 45668999999999998888 9999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEEc-----CCcEEEEeCCC-------Cc-EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCee
Q 005352 404 PVDDNYFISGSI-----DGKVRIWAVLS-------CH-VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (701)
Q Consensus 404 p~~~~~l~sgs~-----dg~v~iwd~~~-------~~-~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~ 470 (701)
+ ++++++.... .+.|.++|++. .. ...+..+...++.+-|.|-+++|++|..+|.|.+||+++++.
T Consensus 103 ~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~ 181 (327)
T KOG0643|consen 103 F-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE 181 (327)
T ss_pred c-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce
Confidence 9 8888777653 36799999983 33 445666778999999999999999999999999999999865
Q ss_pred eeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeC
Q 005352 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
... ....|...|+.+++++ +..++++++.|.+-++||..+....- ......+|++.+++|...+++.|+.
T Consensus 182 ~v~-------s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~K-ty~te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 182 LVD-------SDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVLK-TYTTERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred eee-------chhhhccccccccccC-CcceEEecccCccceeeeccceeeEE-EeeecccccceecccccceEEecCC
Confidence 432 2344667899999999 79999999999999999998654332 2336789999999999888888764
No 54
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=241.68 Aligned_cols=281 Identities=21% Similarity=0.283 Sum_probs=238.2
Q ss_pred ccCcceeeecCc--cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 005352 202 KQGEGERVRLNE--EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 202 ~~~~~~~~~~~~--~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 279 (701)
|.++++.+.+.. +.+++|+.|..|++|+......++ ...|.|-.++|+.+.|.++++++++++.|+.+++|++
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~-----~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSEL-----ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhh-----hhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 566777766544 578899999999999875543333 3457778899999999999999999999999999999
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
...+ ..+++.||++.|++
T Consensus 249 d~~r--------------------------------------------------------------~~~TLsGHtdkVt~ 266 (459)
T KOG0288|consen 249 DSLR--------------------------------------------------------------LRHTLSGHTDKVTA 266 (459)
T ss_pred cchh--------------------------------------------------------------hhhhhcccccceee
Confidence 8763 45677899999999
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 438 (701)
+.|.... .+++|+.|.+|++||+....|.+++-....+..|..+ ...+++|..|++|++||+++..........+.
T Consensus 267 ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~ 343 (459)
T KOG0288|consen 267 AKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGR 343 (459)
T ss_pred ehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcc
Confidence 9998877 6999999999999999999999998877888888775 46799999999999999999999988888899
Q ss_pred EEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
|+++..++++..+++.+.|.++.+.|+++........ ....+ -....+.+.|+| ++.|+++|+.||.|+||++.+
T Consensus 344 vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s--A~g~k--~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 344 VTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS--AEGFK--CASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred eeeEeeccCCeEEeeecCCCceeeeecccccEEEEee--ccccc--cccccceeEECC-CCceeeeccCCCcEEEEEccC
Confidence 9999999999999999999999999999887654322 11212 223488999999 899999999999999999987
Q ss_pred cceeeecccCCC--CeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 519 VIGKYKGLRRSG--NQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 519 ~~~~~~~~~~~~--~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
.+..+.+..... .|++++|+|.|.+|++++.++.+.+|.
T Consensus 419 gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 419 GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 766665544333 599999999999999999999999993
No 55
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=8.4e-29 Score=234.62 Aligned_cols=285 Identities=22% Similarity=0.302 Sum_probs=237.6
Q ss_pred cCcceeeecCccccccccccceEEEEEccCc--cchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEee
Q 005352 203 QGEGERVRLNEEDAMFCSKVQRVKVYHCKKR--SKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (701)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 280 (701)
..+...++++++++++|+.||.|.||++-.. .+++.- .....+--|..+|.||.||.|...||+|+.||.|+||.+.
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkY-QAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKY-QAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhh-hhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 4466778999999999999999999998533 223221 1112455589999999999999999999999999999999
Q ss_pred cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEE
Q 005352 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (701)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 360 (701)
++.++..+. +.|+..|+|+
T Consensus 294 tG~ClRrFd-------------------------------------------------------------rAHtkGvt~l 312 (508)
T KOG0275|consen 294 TGQCLRRFD-------------------------------------------------------------RAHTKGVTCL 312 (508)
T ss_pred cchHHHHhh-------------------------------------------------------------hhhccCeeEE
Confidence 998776553 3699999999
Q ss_pred EEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---C
Q 005352 361 SWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---I 435 (701)
Q Consensus 361 ~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---~ 435 (701)
.|+.++ .+++++.|.++++.-+.+|++++.|. |.++|+...|.+ +++.+++++.||+|++|+..+.+++..+. .
T Consensus 313 ~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~ 391 (508)
T KOG0275|consen 313 SFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGT 391 (508)
T ss_pred EEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCC
Confidence 999999 99999999999999999999999997 999999999999 99999999999999999999998875443 4
Q ss_pred CCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 436 RQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 436 ~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
..+|+++-.-| +...++++...+++.+.++...-.. .....+...+...+...+| .+.++.+.+.|+.++.|
T Consensus 392 d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr------sfsSGkREgGdFi~~~lSp-kGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 392 DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR------SFSSGKREGGDFINAILSP-KGEWIYCIGEDGVLYCF 464 (508)
T ss_pred cccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe------eeccCCccCCceEEEEecC-CCcEEEEEccCcEEEEE
Confidence 56788888877 4468889999999999998753221 1122233445667778899 79999999999999999
Q ss_pred eCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 515 QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
.............|...+..++-+|..+.|++-++||.+++|.
T Consensus 465 ~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 465 SVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9876666555566889999999999999999999999999996
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.4e-28 Score=218.55 Aligned_cols=276 Identities=18% Similarity=0.271 Sum_probs=222.4
Q ss_pred cccCcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.+++.+.+++++ +++.++++.|.+|++|+..+. ...+++.+|...|..++.+.|+..+++||.|..|.+||
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeeccccc-------ceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 356777777776 568889999999999974332 23356888999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+++ .++.|.+|.+.|.
T Consensus 88 V~TGk--------------------------------------------------------------v~Rr~rgH~aqVN 105 (307)
T KOG0316|consen 88 VNTGK--------------------------------------------------------------VDRRFRGHLAQVN 105 (307)
T ss_pred cccCe--------------------------------------------------------------eeeecccccceee
Confidence 99985 4556789999999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCC--eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD 434 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~--~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 434 (701)
.++|+.+. .+++|+.|.++++||-++. ++++.+. ..+.|.++..+ +..|++|+.||++|.||++.++...- .
T Consensus 106 tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sD-y 181 (307)
T KOG0316|consen 106 TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSD-Y 181 (307)
T ss_pred EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehh-h
Confidence 99999888 9999999999999998764 6777776 67889999884 57899999999999999999976632 2
Q ss_pred CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 435 ~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
...+|++++|+++++..++++.++++++.|-.++++..... ..+.... -...+++. ...++++|+.||.|++|
T Consensus 182 ~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-----Ghkn~ey-kldc~l~q-sdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 182 FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-----GHKNMEY-KLDCCLNQ-SDTHVFSGSEDGKVYFW 254 (307)
T ss_pred cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-----cccccee-eeeeeecc-cceeEEeccCCceEEEE
Confidence 35789999999999999999999999999999988653321 1111111 12344554 56899999999999999
Q ss_pred eCCccceeeecccCCCC-eEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 515 QGPNVIGKYKGLRRSGN-QLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~-v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
|+.+.....+...+... +.+++++|.-..++++. ++.+..|-
T Consensus 255 dLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 255 DLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred EeccceeeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence 99877766666556665 89999999888788876 45566665
No 57
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.7e-27 Score=218.96 Aligned_cols=267 Identities=19% Similarity=0.297 Sum_probs=230.4
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+++++|.+.|.+++|+.+|..|++|+.|+++++|+++......
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~------------------------------------- 56 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK------------------------------------- 56 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-------------------------------------
Confidence 6788999999999999999999999999999999997653211
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~ 401 (701)
-....+|.+.|-.++|+|.. .|++++.|++|++||++++++.........=.-+.
T Consensus 57 -----------------------~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~ 113 (313)
T KOG1407|consen 57 -----------------------ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINIT 113 (313)
T ss_pred -----------------------hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEE
Confidence 12347899999999999976 99999999999999999999999998777667789
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
|+| ++.+++.+..|..|.+.|.++.+.+........+.-++|+-++.+++.....|.|.|.....-+.. ..
T Consensus 114 wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv--------~s 184 (313)
T KOG1407|consen 114 WSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPV--------QS 184 (313)
T ss_pred EcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccc--------cc
Confidence 999 999999999999999999999999988888888999999988888888888899999988754432 23
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.+.|.....||.|.| +++++++|+.|-.+.+||+..+...-...++.-+|..++|+.||++||+||+|-.|-|=++++|
T Consensus 185 i~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 185 IKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccC
Confidence 456667888999999 8999999999999999999998888777779999999999999999999999999999998888
Q ss_pred CCCCccccccccccccccC-CceEEecCCCC
Q 005352 562 EEPAHDQAKTIRSLERFTT-NASIAIPWCGL 591 (701)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~ 591 (701)
.. +...++ .....++|++.
T Consensus 264 d~-----------~~eI~~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 264 DR-----------VWEIPCEGPTFTVAWHPK 283 (313)
T ss_pred Ce-----------EEEeeccCCceeEEecCC
Confidence 72 223334 66666777765
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.4e-28 Score=235.19 Aligned_cols=233 Identities=21% Similarity=0.326 Sum_probs=197.4
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
....|.|+.+ |...+++|..|++|+|||..+..
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~--------------------------------------------- 228 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLE--------------------------------------------- 228 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHH---------------------------------------------
Confidence 4567999999 45679999999999999987653
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCC
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDD 407 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~ 407 (701)
.+..+.||++.|.|+.|... .+++|+.|.+|++||+++++++.++- |...|..+.|+ +
T Consensus 229 -----------------c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~---n 287 (499)
T KOG0281|consen 229 -----------------CLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS---N 287 (499)
T ss_pred -----------------HHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe---C
Confidence 34456899999999998533 89999999999999999999998875 88999999996 4
Q ss_pred CEEEEEEcCCcEEEEeCCCCcEE----EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC
Q 005352 408 NYFISGSIDGKVRIWAVLSCHVV----DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (701)
Q Consensus 408 ~~l~sgs~dg~v~iwd~~~~~~~----~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 483 (701)
.++++++.|.++.+||+....-+ .+.+|...|+.+.|+ .+++++++.|.+|++|++.+.++.. ...
T Consensus 288 g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvR--------tl~ 357 (499)
T KOG0281|consen 288 GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVR--------TLN 357 (499)
T ss_pred CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeeh--------hhh
Confidence 79999999999999999876533 345789999999996 4599999999999999999887542 244
Q ss_pred CCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 484 ~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.|...|.|+++ .+.++++|+.|.+|++||+......-...+|..-|.++.| |.+.|++|+.||+|++||+..+..
T Consensus 358 gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 358 GHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred cccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccC
Confidence 56677888887 6789999999999999999876655555568999999999 567899999999999999998875
Q ss_pred C
Q 005352 564 P 564 (701)
Q Consensus 564 ~ 564 (701)
+
T Consensus 433 p 433 (499)
T KOG0281|consen 433 P 433 (499)
T ss_pred C
Confidence 4
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.4e-27 Score=218.42 Aligned_cols=265 Identities=20% Similarity=0.329 Sum_probs=214.1
Q ss_pred ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeE
Q 005352 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (701)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 299 (701)
..|++.|-+.... ..+...+.+. -...+..++|+++ ...+++++.||.++|||+....
T Consensus 36 G~G~L~ile~~~~----~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s---------------- 94 (311)
T KOG0277|consen 36 GNGRLFILEVTDP----KGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS---------------- 94 (311)
T ss_pred cCceEEEEecCCC----CCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCC----------------
Confidence 4677778776411 1111111121 3567999999996 5578899999999999954322
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcE
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTV 377 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I 377 (701)
+|++.++.|+.+|.++.|++-. .++++|.|++|
T Consensus 95 ---------------------------------------------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~Ti 129 (311)
T KOG0277|consen 95 ---------------------------------------------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTI 129 (311)
T ss_pred ---------------------------------------------cchhHHHhhhhheEEeccccccceeEEeeccCCce
Confidence 6888999999999999999865 88889999999
Q ss_pred EEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-CcEEEEecCCCcEEEEEEee-CCCeEEEE
Q 005352 378 RLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVVDWVDIRQIVTAVCYRP-DGQGGIVG 454 (701)
Q Consensus 378 ~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-~~~~~~~~~~~~i~~i~~sp-~g~~l~~g 454 (701)
++|+...++.+.+|. |...|...+|+|..+++|++++.|+++++||++. ++.+.+..|...|.++.|+. +...+++|
T Consensus 130 KLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 130 KLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred EeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec
Confidence 999999999999997 9999999999999999999999999999999985 45556777888999999997 56788999
Q ss_pred ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceee-ecccCCCCeE
Q 005352 455 SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY-KGLRRSGNQL 533 (701)
Q Consensus 455 s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~ 533 (701)
+.|+.|+.||+++-+..+ .....|...|..+.|+|....+|++++.|-+++|||........ +...|..-+.
T Consensus 210 ~vd~~vr~wDir~~r~pl-------~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~ 282 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPL-------FELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVC 282 (311)
T ss_pred CCCceEEEEehhhccccc-------eeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEe
Confidence 999999999999765321 12356778999999999888999999999999999976322221 2223778889
Q ss_pred EEEEec-CCCEEEEEeCCCcEEEEeC
Q 005352 534 SACFTS-DGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 534 ~l~~s~-dg~~l~sgs~Dg~I~iWd~ 558 (701)
.+.|++ +..++|+++.|+.++||+.
T Consensus 283 g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 283 GLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccccccCceeeecccccceeeecc
Confidence 999987 5679999999999999983
No 60
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-26 Score=230.26 Aligned_cols=283 Identities=20% Similarity=0.327 Sum_probs=228.3
Q ss_pred ccCcceeeecCcc--ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 005352 202 KQGEGERVRLNEE--DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 202 ~~~~~~~~~~~~~--~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 279 (701)
....+..+++++. +..+.+..-++.||+..... .. +.+.-.+..|.++.|-.||++||.|+..|.|+|+|.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~--~~-----k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~ 97 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS--VR-----KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDM 97 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhh--hh-----hhHHhhccceeEEEeecCCeEEEccCCcCcEEEecc
Confidence 3445566666653 34445556678888754322 11 123335678999999999999999999999999995
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
.+. ..+..+.+|..+|..
T Consensus 98 k~r--------------------------------------------------------------~iLR~~~ah~apv~~ 115 (487)
T KOG0310|consen 98 KSR--------------------------------------------------------------VILRQLYAHQAPVHV 115 (487)
T ss_pred ccH--------------------------------------------------------------HHHHHHhhccCceeE
Confidence 442 234567889999999
Q ss_pred EEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC-cEEEEecC
Q 005352 360 LSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWVDI 435 (701)
Q Consensus 360 l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~ 435 (701)
+.|+|.+ .|++|+.|+.+++||+.+......+. |+++|.|.+|+|.++.++++|+.||+|++||++.. ..+..++|
T Consensus 116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh 195 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH 195 (487)
T ss_pred EEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC
Confidence 9999987 89999999999999999988643443 99999999999988889999999999999999987 67788899
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
..+|..+.+-|.|..+++++. ..+++||+.++.... .....|...|+|+.+.. ++..|++++-|+.|++||
T Consensus 196 g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll-------~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 196 GCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLL-------TSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred CCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceeh-------hhhhcccceEEEEEeec-CCceEeecccccceEEEE
Confidence 999999999999999998875 679999999665432 12344778999999998 779999999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
..+.+..+. ....++|.+++.+|+++.++.|..||.+.+=+...+++
T Consensus 267 ~t~~Kvv~s-~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k 313 (487)
T KOG0310|consen 267 TTNYKVVHS-WKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKK 313 (487)
T ss_pred ccceEEEEe-eecccceeeEEecCCCceEEEecccceeeeehhhcccC
Confidence 776555444 34779999999999999999999999998886655554
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.2e-27 Score=219.57 Aligned_cols=245 Identities=22% Similarity=0.320 Sum_probs=208.7
Q ss_pred ceeccCCCcEEEEEEcc---CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccccee
Q 005352 244 QEIQAHDGSILTMKFSP---DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fsp---dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (701)
..-.||+.+|..++||| +|-+|++++.|+.-.+-+=+++
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg-------------------------------------- 49 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG-------------------------------------- 49 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC--------------------------------------
Confidence 35678999999999986 7989999999998776665554
Q ss_pred eEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEE
Q 005352 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTC 399 (701)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~ 399 (701)
.-+-+|.||++.|...+...+- ..++++.|-+-++||.-++..+..|.|...|..
T Consensus 50 ------------------------dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~ 105 (334)
T KOG0278|consen 50 ------------------------DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKA 105 (334)
T ss_pred ------------------------CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeee
Confidence 2356788999999999998887 888999999999999999999999999999999
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCCCc--EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
++|+. +.++|++|+.+..+||||++..+ ...+.+|.+.|..+.|....+.|++.+.|++||+||.+++.......+
T Consensus 106 ~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~- 183 (334)
T KOG0278|consen 106 VAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF- 183 (334)
T ss_pred EEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-
Confidence 99998 99999999999999999998754 457778999999999999999999999999999999999876654332
Q ss_pred eecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 478 ~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
...++++.+++ ++ .+++....+.|.+||.+.... ++.......|.+.+++|+...+++|++|..++.||
T Consensus 184 --------~s~VtSlEvs~-dG-~ilTia~gssV~Fwdaksf~~-lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfD 252 (334)
T KOG0278|consen 184 --------NSPVTSLEVSQ-DG-RILTIAYGSSVKFWDAKSFGL-LKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFD 252 (334)
T ss_pred --------CCCCcceeecc-CC-CEEEEecCceeEEeccccccc-eeeccCccccccccccCCCceEEecCcceEEEEEe
Confidence 25688999998 44 456667788999999886433 22233557899999999999999999999999999
Q ss_pred CCCCCC
Q 005352 558 CIGHEE 563 (701)
Q Consensus 558 ~~~~~~ 563 (701)
+.++++
T Consensus 253 y~TgeE 258 (334)
T KOG0278|consen 253 YNTGEE 258 (334)
T ss_pred ccCCce
Confidence 999874
No 62
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.3e-27 Score=249.98 Aligned_cols=250 Identities=18% Similarity=0.338 Sum_probs=215.3
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
-...|..++|+|...+++++-..|.|++||..-+.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t--------------------------------------------- 42 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT--------------------------------------------- 42 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhh---------------------------------------------
Confidence 46678999999999999999999999999987763
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCC
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVD 406 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~ 406 (701)
.+..|..|.++|..++|+|.+ +|++|+.|-.|++|+..+.+|+.++. |-++|..+.|++ .
T Consensus 43 -----------------li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh-e 104 (1202)
T KOG0292|consen 43 -----------------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-E 104 (1202)
T ss_pred -----------------HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC-C
Confidence 456678899999999999999 99999999999999999999998875 999999999999 8
Q ss_pred CCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeee-----------
Q 005352 407 DNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA----------- 474 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~----------- 474 (701)
-.++++++.|.+|+||+..+++++ ...+|..-|+|..|+|....+++++-|.+|++||+..-+.....
T Consensus 105 yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~ 184 (1202)
T KOG0292|consen 105 YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ 184 (1202)
T ss_pred CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence 899999999999999999999988 56689999999999999999999999999999999743221110
Q ss_pred ----------eEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce--eeecccCCCCeEEEEEecCCC
Q 005352 475 ----------EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG--KYKGLRRSGNQLSACFTSDGK 542 (701)
Q Consensus 475 ----------~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~ 542 (701)
...+.....+|...|+-++|+| .-.++++|+.|..|++|.+..... .-...+|...|.++-|+|...
T Consensus 185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~ 263 (1202)
T KOG0292|consen 185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD 263 (1202)
T ss_pred ccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc
Confidence 1112223456888999999999 678999999999999999874332 223345999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCC
Q 005352 543 HIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 543 ~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+|++.|+|++|+|||+....
T Consensus 264 lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 264 LILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred eeEecCCCccEEEEeccccc
Confidence 99999999999999998765
No 63
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.3e-26 Score=228.54 Aligned_cols=281 Identities=22% Similarity=0.305 Sum_probs=222.3
Q ss_pred ccCcceee--ecCccccccccccceEEEEEccCccch---------hhhccc-Ccee-ccCCCcEEEEEEccCCCEEEEE
Q 005352 202 KQGEGERV--RLNEEDAMFCSKVQRVKVYHCKKRSKE---------LSALYK-GQEI-QAHDGSILTMKFSPDGQYLASA 268 (701)
Q Consensus 202 ~~~~~~~~--~~~~~~~~~~~~d~~v~vw~~~~~~~~---------~~~~~~-~~~l-~~H~~~I~~l~fspdg~~Lasg 268 (701)
|+-.+.++ ++++.+.+.++.+++|.-|+....... +...+. .+.- ++|...|.+++.|+||+|||||
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence 34444443 455568888999999999987433211 110111 1111 4899999999999999999999
Q ss_pred eCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeE
Q 005352 269 GDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLH 348 (701)
Q Consensus 269 s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (701)
+.|..|.||+..+.+ +++
T Consensus 221 g~d~~v~Iw~~~t~e--------------------------------------------------------------hv~ 238 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLE--------------------------------------------------------------HVK 238 (479)
T ss_pred CCCceEEEecCcccc--------------------------------------------------------------hhh
Confidence 999999999998873 566
Q ss_pred EEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 349 EFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 349 ~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
.+.+|.+.|.+++|-... .|++++.|++|++|++.....+.++ .|++.|..|.... .++.+-+|+.|+++++|++..
T Consensus 239 ~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e 317 (479)
T KOG0299|consen 239 VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE 317 (479)
T ss_pred cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccc
Confidence 688999999999998776 9999999999999999988777665 5999999999886 777777788999999999987
Q ss_pred CcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc----CCCCCCeeEEEEecCCCCEE
Q 005352 427 CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK----KAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 427 ~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~~p~~~~~l 502 (701)
...+.+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++...+............. ..+...|++++..| ..+++
T Consensus 318 esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~ 395 (479)
T KOG0299|consen 318 ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLL 395 (479)
T ss_pred cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-cCceE
Confidence 777788888889999999754 5889999999999999998887665443322211 11224899999999 78999
Q ss_pred EEEECCCcEEEEeCCcc---ceeeecccCCCCeEEEEEecCCCEEEEE
Q 005352 503 MVSCADSQVRILQGPNV---IGKYKGLRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~v~~l~~s~dg~~l~sg 547 (701)
++|+.+|.|++|-+... ...+....-.+.|++++|+++|+.|++|
T Consensus 396 asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 396 ASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred EecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 99999999999998765 3333334467889999999999977776
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.7e-26 Score=222.77 Aligned_cols=237 Identities=21% Similarity=0.340 Sum_probs=197.1
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
|...|.++... ++.++||+.||.++|||...
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G----------------------------------------------- 134 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG----------------------------------------------- 134 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCC-----------------------------------------------
Confidence 89999999887 77999999999999999743
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC----eEEEEECCCcEEEEECCCCeeeeee-----cCCCCeEE
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN----YLLSASIDKTVRLWRVGNDHCLRVF-----PHSNYVTC 399 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~----~l~s~s~dg~I~iWd~~~~~~~~~~-----~h~~~V~~ 399 (701)
+..+.+.||.++|.+++|...+ .|++++.|.++++|.++.+...... .|...|.+
T Consensus 135 ----------------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~s 198 (423)
T KOG0313|consen 135 ----------------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDS 198 (423)
T ss_pred ----------------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeE
Confidence 3456678999999988886543 6999999999999998877543222 49999999
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCC-------------------------C-cEEEEecCCCcEEEEEEeeCCCeEEE
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLS-------------------------C-HVVDWVDIRQIVTAVCYRPDGQGGIV 453 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~-------------------------~-~~~~~~~~~~~i~~i~~sp~g~~l~~ 453 (701)
+...+ ++..|++|+.|..|.||+..+ + .++...+|..+|.++.|++ ...+++
T Consensus 199 Vsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS 276 (423)
T KOG0313|consen 199 VSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYS 276 (423)
T ss_pred EEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEe
Confidence 99999 999999999999999999321 0 1345678999999999998 678999
Q ss_pred EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc---ceeeecccCCC
Q 005352 454 GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV---IGKYKGLRRSG 530 (701)
Q Consensus 454 gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~ 530 (701)
++.|.+|+.||+.++...... .....++++.++| ...+|++|+.|..|++||.++. ...+...+|..
T Consensus 277 ~SwDHTIk~WDletg~~~~~~---------~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n 346 (423)
T KOG0313|consen 277 VSWDHTIKVWDLETGGLKSTL---------TTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN 346 (423)
T ss_pred ecccceEEEEEeecccceeee---------ecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchh
Confidence 999999999999988765321 2236789999999 7899999999999999998753 23344556899
Q ss_pred CeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCC
Q 005352 531 NQLSACFTSDG-KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 531 ~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.|.++.|+|.. .+|++|+.|+++++||+++.+
T Consensus 347 wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 347 WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred hhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 99999999965 567899999999999988765
No 65
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=232.17 Aligned_cols=293 Identities=16% Similarity=0.188 Sum_probs=225.2
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.++.+++..+++|+-|.+|+.||+..-...+......+ ......|.++.|++.|..|+..+....++|+|-...+.+.
T Consensus 173 l~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~--P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e 250 (641)
T KOG0772|consen 173 LAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ--PCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVE 250 (641)
T ss_pred eeecCCCceeeeccccceEEEEecccccccchhhhccC--cccccccceeeecCCCCeEEEEecCcceeEEccCCceeee
Confidence 45667788999999999999999977655544433222 2344569999999999988888777899999965544332
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
..+... .+ .-+..-+||...++|.+|+|..
T Consensus 251 ~~KGDQ--------------------------------------YI------------~Dm~nTKGHia~lt~g~whP~~ 280 (641)
T KOG0772|consen 251 FSKGDQ--------------------------------------YI------------RDMYNTKGHIAELTCGCWHPDN 280 (641)
T ss_pred eeccch--------------------------------------hh------------hhhhccCCceeeeeccccccCc
Confidence 221110 00 1233457999999999999987
Q ss_pred --eEEEEECCCcEEEEECCCCe-eeeeec------CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE----EEe
Q 005352 367 --YLLSASIDKTVRLWRVGNDH-CLRVFP------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV----DWV 433 (701)
Q Consensus 367 --~l~s~s~dg~I~iWd~~~~~-~~~~~~------h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~----~~~ 433 (701)
.|+|++.||+++|||+...+ .+..+. ..-+++.++|+| ++++||+|+.||.|.+|+..+..+. ...
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~ 359 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD 359 (641)
T ss_pred ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeee
Confidence 99999999999999997653 444454 345799999999 9999999999999999998654322 122
Q ss_pred cCCC--cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC----
Q 005352 434 DIRQ--IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA---- 507 (701)
Q Consensus 434 ~~~~--~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~---- 507 (701)
.|.. .|++|.|+++|++|++-+.|+++++||++..+..+..... .....+-+.++|+| +..+|++|..
T Consensus 360 AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg-----L~t~~~~tdc~FSP-d~kli~TGtS~~~~ 433 (641)
T KOG0772|consen 360 AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG-----LPTPFPGTDCCFSP-DDKLILTGTSAPNG 433 (641)
T ss_pred ccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC-----CCccCCCCccccCC-CceEEEecccccCC
Confidence 3444 7999999999999999999999999999986644322111 12234567899999 7788888865
Q ss_pred --CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 508 --DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 508 --dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.+.+.+||..+...+++..-....|..+.|+|.-+.|+.|+.||.+++|==
T Consensus 434 ~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 434 MTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 578999999988888887767889999999999999999999999999843
No 66
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.1e-26 Score=217.51 Aligned_cols=295 Identities=19% Similarity=0.278 Sum_probs=218.8
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC------------------eeeeee-cCCCCeEEEEEeeCC
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND------------------HCLRVF-PHSNYVTCVHFNPVD 406 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~------------------~~~~~~-~h~~~V~~l~f~p~~ 406 (701)
...+..|+.++.+.+|+++| ++++|+.|..|+|.|++.. -.++++ .|...|+++.|+| .
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-r 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-R 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-h
Confidence 44567899999999999999 9999999999999998611 123333 3999999999999 9
Q ss_pred CCEEEEEEcCCcEEEEeCCCCcEE---EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC
Q 005352 407 DNYFISGSIDGKVRIWAVLSCHVV---DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~~~---~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 483 (701)
..+|++|+.|++|++||+...... +.+....+|.+++|+|.|.+|++|+.-..+++||+++.++.... ....
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa-----nPd~ 258 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA-----NPDD 258 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-----Cccc
Confidence 999999999999999999765433 45566789999999999999999999999999999988765432 2345
Q ss_pred CCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce--eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG--KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 484 ~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.|...|+++.+++ .+.+.++++.||.|+|||.-...+ .+........|.++.|+.+|+||++.+.|..+++|.+.++
T Consensus 259 qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 259 QHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred ccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 6778999999999 799999999999999999864333 3333324567999999999999999999999999999998
Q ss_pred CCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCc
Q 005352 562 EEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEE 641 (701)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~ 641 (701)
.... .+... |..- .........+.+ .....+.|+. ....+..|+..
T Consensus 338 R~l~--------~YtGA-----------g~tg--rq~~rtqAvFNh--tEdyVl~pDE-----------as~slcsWdaR 383 (430)
T KOG0640|consen 338 RMLK--------EYTGA-----------GTTG--RQKHRTQAVFNH--TEDYVLFPDE-----------ASNSLCSWDAR 383 (430)
T ss_pred ceEE--------EEecC-----------Cccc--chhhhhhhhhcC--ccceEEcccc-----------ccCceeecccc
Confidence 7321 11100 0000 000000001111 1222334541 23445678887
Q ss_pred cCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 642 KLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
....+.-+... |++.|..+..++. +..++|++.|-++|.|-
T Consensus 384 tadr~~l~slg----------Hn~a~R~i~HSP~-~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 384 TADRVALLSLG----------HNGAVRWIVHSPV-EPAFMTCSDDFRARFWY 424 (430)
T ss_pred chhhhhhcccC----------CCCCceEEEeCCC-CCceeeecccceeeeee
Confidence 76654333222 1567887777777 99999999999999994
No 67
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=6.3e-26 Score=247.68 Aligned_cols=303 Identities=19% Similarity=0.303 Sum_probs=226.8
Q ss_pred eeeecCcccccccc--ccceEEEEEccCccchhhh-----cccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 005352 207 ERVRLNEEDAMFCS--KVQRVKVYHCKKRSKELSA-----LYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 207 ~~~~~~~~~~~~~~--~d~~v~vw~~~~~~~~~~~-----~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 279 (701)
.++++++..+++|+ .|+.++||..+.-..+... .........|.+.|.|+.|+|||+|||+|+.|+.|.||..
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 35566777788888 8888999987532211111 1112245679999999999999999999999999999997
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
.... .... ..+.++...+. .-+.+..+.+|...|.+
T Consensus 99 ~~~~-~~~~-----------------------fgs~g~~~~vE--------------------~wk~~~~l~~H~~DV~D 134 (942)
T KOG0973|consen 99 AEIG-SGTV-----------------------FGSTGGAKNVE--------------------SWKVVSILRGHDSDVLD 134 (942)
T ss_pred cccC-Cccc-----------------------ccccccccccc--------------------eeeEEEEEecCCCccce
Confidence 6410 0000 00000000000 01556788999999999
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD--- 434 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~--- 434 (701)
++|+|++ +|++++.|++|.|||..+.+++..+. |.+.|-.+.|.| -++||++-+.|++|+||++.+-.+.+.+.
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence 9999999 99999999999999999999999887 999999999999 99999999999999999987755554332
Q ss_pred ----CCCcEEEEEEeeCCCeEEEEec----CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC----C----
Q 005352 435 ----IRQIVTAVCYRPDGQGGIVGSM----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ----D---- 498 (701)
Q Consensus 435 ----~~~~i~~i~~sp~g~~l~~gs~----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~----~---- 498 (701)
....+..+.|+|||++|++... -..+.|.+-.+.+. .....+|..++.++.|+|. .
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~--------~~~LvGH~~p~evvrFnP~lfe~~~~ng 285 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV--------DKDLVGHSAPVEVVRFNPKLFERNNKNG 285 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee--------eeeeecCCCceEEEEeChHHhccccccC
Confidence 2335788999999999998643 23355655443322 1124456789999999982 1
Q ss_pred ----CC----EEEEEECCCcEEEEeCCccceeeeccc-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 499 ----SS----KVMVSCADSQVRILQGPNVIGKYKGLR-RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 499 ----~~----~l~~~s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+. .+++|+.|+.|.||........+..+. ....|..++|+|||..|+.+|.||+|.+..++..+
T Consensus 286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 11 678899999999999876665555433 56789999999999999999999999999987644
No 68
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.7e-25 Score=211.21 Aligned_cols=271 Identities=14% Similarity=0.227 Sum_probs=217.4
Q ss_pred cceeeecCc--cccc-cccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec
Q 005352 205 EGERVRLNE--EDAM-FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281 (701)
Q Consensus 205 ~~~~~~~~~--~~~~-~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 281 (701)
.+.++.+++ ..++ .++-|++||+|++..... +.....+.|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCc-----ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 344444443 4444 689999999999865422 22234566999999999999999999999999999999998
Q ss_pred CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE
Q 005352 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (701)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 361 (701)
++ +..+..|.++|..+.
T Consensus 104 ~Q---------------------------------------------------------------~~~v~~Hd~pvkt~~ 120 (347)
T KOG0647|consen 104 GQ---------------------------------------------------------------VSQVAAHDAPVKTCH 120 (347)
T ss_pred CC---------------------------------------------------------------eeeeeecccceeEEE
Confidence 75 234456999999999
Q ss_pred EecCC---eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE---EecC
Q 005352 362 WSKNN---YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD---WVDI 435 (701)
Q Consensus 362 ~s~~~---~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~---~~~~ 435 (701)
|-+.. .|+|||.|++|+.||.+...++.++..+..|+++.. ...+++.+..+..|.+|+++++.... ....
T Consensus 121 wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv---~~pm~vVata~r~i~vynL~n~~te~k~~~SpL 197 (347)
T KOG0647|consen 121 WVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV---LYPMAVVATAERHIAVYNLENPPTEFKRIESPL 197 (347)
T ss_pred EecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc---cCceeEEEecCCcEEEEEcCCCcchhhhhcCcc
Confidence 98764 899999999999999999999999999999999886 34688888899999999998765431 2234
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC---CCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK---APCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~---~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
+-.+.+|+..++....+.|+.+|.+.+..+..........+..+.... .....|++++|+| ....|++.+.||+..
T Consensus 198 k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~ 276 (347)
T KOG0647|consen 198 KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFS 276 (347)
T ss_pred cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEE
Confidence 567899999999999999999999999999886444444455544322 1246789999999 688999999999999
Q ss_pred EEeCCccceeeecccCCCCeEEEEEecCCCEEEEE
Q 005352 513 ILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sg 547 (701)
+||.....+......+..+|++++|+.+|.+++-+
T Consensus 277 FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 277 FWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 99987665555556689999999999999988765
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-25 Score=212.86 Aligned_cols=269 Identities=21% Similarity=0.305 Sum_probs=216.2
Q ss_pred ccccccceEEEEEccCccch-----hhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 217 MFCSKVQRVKVYHCKKRSKE-----LSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 217 ~~~~~d~~v~vw~~~~~~~~-----~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
++|+....|.=+.++...+. ...+...-.+++|.++|++++. +|.|+||||.|-+|+|||+....
T Consensus 5 IvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~-------- 74 (362)
T KOG0294|consen 5 IVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK-------- 74 (362)
T ss_pred EEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh--------
Confidence 44555555555555433211 1111222346889999999999 58999999999999999997753
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC---eE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YL 368 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~---~l 368 (701)
.+..+..|.+.|+++.|.+.- .|
T Consensus 75 ------------------------------------------------------qlg~ll~HagsitaL~F~~~~S~shL 100 (362)
T KOG0294|consen 75 ------------------------------------------------------QLGILLSHAGSITALKFYPPLSKSHL 100 (362)
T ss_pred ------------------------------------------------------hhcceeccccceEEEEecCCcchhhe
Confidence 234456699999999999875 99
Q ss_pred EEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeC
Q 005352 369 LSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD 447 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~ 447 (701)
++|+.||.|.+|+.....++..++ |.+.|+.++.+| .+++-++.+.|+.++.||+-.++.-.........+.+.|+|.
T Consensus 101 lS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~ 179 (362)
T KOG0294|consen 101 LSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQ 179 (362)
T ss_pred eeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCC
Confidence 999999999999999999999998 999999999999 999999999999999999999988777777777788999999
Q ss_pred CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeeccc
Q 005352 448 GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLR 527 (701)
Q Consensus 448 g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~ 527 (701)
|.+++++.. ..|-+|.+.+.++..... ...++.++.|. ++..+++|..|+.|.+||............
T Consensus 180 Gd~F~v~~~-~~i~i~q~d~A~v~~~i~---------~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A 247 (362)
T KOG0294|consen 180 GDHFVVSGR-NKIDIYQLDNASVFREIE---------NPKRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEFLA 247 (362)
T ss_pred CCEEEEEec-cEEEEEecccHhHhhhhh---------ccccceeeeec--CCceEEEecCCceEEEeccCCCccceeeec
Confidence 999988876 458899988765432211 11446666665 578999999999999999987777777777
Q ss_pred CCCCeEEEEE--ecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 528 RSGNQLSACF--TSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 528 ~~~~v~~l~~--s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|...|-++.+ .|++.||+|+|.||.|+|||++...
T Consensus 248 H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 248 HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred chhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 9999999884 4678999999999999999998774
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=3.9e-27 Score=216.23 Aligned_cols=280 Identities=16% Similarity=0.217 Sum_probs=226.2
Q ss_pred cccCcceeeec-----CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEE
Q 005352 201 DKQGEGERVRL-----NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR 275 (701)
Q Consensus 201 ~~~~~~~~~~~-----~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 275 (701)
.|...+..+.+ .+-.++.++.|+.-.+.+-+.... . -++.||++.|++.....+....|+++.|-+.+
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw--i-----gtfeghkgavw~~~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW--I-----GTFEGHKGAVWSATLNKNATRAASAAADFTAK 84 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc--E-----EeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence 34444544443 344566677777766664332211 1 25778999999999999999999999999999
Q ss_pred EEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCcc
Q 005352 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (701)
Q Consensus 276 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 355 (701)
|||..++..+..+ .|+.
T Consensus 85 vw~a~tgdelhsf---------------------------------------------------------------~hkh 101 (334)
T KOG0278|consen 85 VWDAVTGDELHSF---------------------------------------------------------------EHKH 101 (334)
T ss_pred hhhhhhhhhhhhh---------------------------------------------------------------hhhh
Confidence 9999887544333 2778
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCe-eeeee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-CLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~-~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
-|..++|+.+. +|++|+.++.++|+|++..+ +...+ .|.+.|..+.|.. .++.|++...|++||+||.+++..++.
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~s 180 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQS 180 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEE
Confidence 89999999998 99999999999999998754 23333 4999999999998 888999999999999999999999999
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
+..+.+|+++.++++|++|.++. .+.|.+||..+-.+.... .....|.+..++| +...+++|+.|..++
T Consensus 181 L~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~---------k~P~nV~SASL~P-~k~~fVaGged~~~~ 249 (334)
T KOG0278|consen 181 LEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSY---------KMPCNVESASLHP-KKEFFVAGGEDFKVY 249 (334)
T ss_pred EecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeec---------cCccccccccccC-CCceEEecCcceEEE
Confidence 99999999999999998776654 578999999876554322 1235688889999 569999999999999
Q ss_pred EEeCCccceeee-cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 513 ILQGPNVIGKYK-GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 513 iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.||..+....-. ..+|.++|.++.|+|+|...++||+||+|+||....++
T Consensus 250 kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 250 KFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 999886655444 25589999999999999999999999999999987766
No 71
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-24 Score=207.40 Aligned_cols=292 Identities=20% Similarity=0.269 Sum_probs=222.7
Q ss_pred CceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+.++.-.+.|.+|.|+++|.+|++++.|.+|+|||..+++++..+..+.-.+.++.|.......+..-.-....+..+.
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 34455567899999999999999999999999999999999998888776666666665544332221111111111111
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~ 401 (701)
.. .++.++.|.||...|..|+.+|-+ .+++++.|++|++||++..+|...+..... ..++
T Consensus 87 l~------------------dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~A 147 (311)
T KOG1446|consen 87 LH------------------DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAA 147 (311)
T ss_pred ee------------------cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-ccee
Confidence 10 126788999999999999999988 999999999999999999998887764443 4578
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCc---EEEE--e-cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeee
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCH---VVDW--V-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~---~~~~--~-~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~ 475 (701)
|.| .|-+||++...+.|++||++.-. ...+ . ......+.+.|+|||+.++.++..+.+++.|.-++..+....
T Consensus 148 fDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs 226 (311)
T KOG1446|consen 148 FDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS 226 (311)
T ss_pred ECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence 999 99999999888899999998642 1111 1 235678999999999999999999999999999888654433
Q ss_pred EEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeeccc-CCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLR-RSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 476 ~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
..... . .--....|.| +++++++|+.||+|.+|++.+........+ +..++.++.|+|...+++|++ ..+.
T Consensus 227 ~~~~~----~-~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~ 298 (311)
T KOG1446|consen 227 GYPNA----G-NLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLV 298 (311)
T ss_pred eccCC----C-CcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEE
Confidence 22211 1 1125678889 899999999999999999998777766655 688999999999987777764 5788
Q ss_pred EEeCCCCC
Q 005352 555 MWNCIGHE 562 (701)
Q Consensus 555 iWd~~~~~ 562 (701)
+|=....+
T Consensus 299 fw~p~~~~ 306 (311)
T KOG1446|consen 299 FWLPDEDA 306 (311)
T ss_pred EEeccccc
Confidence 88766444
No 72
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=5.4e-25 Score=238.19 Aligned_cols=251 Identities=16% Similarity=0.213 Sum_probs=187.5
Q ss_pred eeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 245 EIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 245 ~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
.+.+|.+.|++++|+| ++++||+|+.|++|+|||+.++.....
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~------------------------------------ 113 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN------------------------------------ 113 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc------------------------------------
Confidence 5789999999999999 889999999999999999976431100
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l 400 (701)
...++..+.+|...|.+++|+|++ +|++++.|++|+|||+.+++.+..+. |...|.++
T Consensus 114 -------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 114 -------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred -------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 014567788999999999999975 89999999999999999999888886 88999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCc-EEEEEEeeCCCeEEEEe----cCCcEEEEECCCCeeeeee
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQI-VTAVCYRPDGQGGIVGS----MMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~-i~~i~~sp~g~~l~~gs----~dg~v~i~d~~~~~~~~~~ 474 (701)
+|+| ++.+|++++.|++|+|||+++++.+. ...|.+. +..+.|.+++..+++++ .|+.|++||+++......
T Consensus 175 a~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~- 252 (493)
T PTZ00421 175 EWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS- 252 (493)
T ss_pred EEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee-
Confidence 9999 99999999999999999999988764 3445543 45678899888777654 478999999986543211
Q ss_pred eEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 475 EICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 475 ~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
.. .......+....|++ ++.+|++++ .|+.|++||+.+....+.. ..+..++..++|.|.-..=+- .--.
T Consensus 253 ---~~--~~d~~~~~~~~~~d~-d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~--~~Ei 324 (493)
T PTZ00421 253 ---TV--DLDQSSALFIPFFDE-DTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTR--KCEI 324 (493)
T ss_pred ---Ee--ccCCCCceEEEEEcC-CCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccccccc--ceee
Confidence 10 111223455556777 677787777 5999999999865544332 224556788888885321111 1123
Q ss_pred EEEEeCCC
Q 005352 553 VYMWNCIG 560 (701)
Q Consensus 553 I~iWd~~~ 560 (701)
.++|.+..
T Consensus 325 ~r~~~l~~ 332 (493)
T PTZ00421 325 ARFYALTY 332 (493)
T ss_pred eEEEEecC
Confidence 46666643
No 73
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.9e-26 Score=222.33 Aligned_cols=284 Identities=17% Similarity=0.302 Sum_probs=226.5
Q ss_pred ceeeecccCcceeeecCccc---cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCC
Q 005352 196 LACVVDKQGEGERVRLNEED---AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG 272 (701)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 272 (701)
++.+..|...+.++.-.+.. +++|+.||.|+||++..+ .....+++|.|.|..|++.. ..++|+|.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR-------~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDK 129 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR-------ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDK 129 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh-------hhhheeecccCceeeEEecc--cceEEecCCc
Confidence 33444677777777766654 567999999999976533 23356889999999999987 6799999999
Q ss_pred cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcC
Q 005352 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (701)
Q Consensus 273 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (701)
+|+.|.+... +.+++.+
T Consensus 130 tvK~wk~~~~---------------------------------------------------------------p~~tilg 146 (433)
T KOG0268|consen 130 TVKQWKIDGP---------------------------------------------------------------PLHTILG 146 (433)
T ss_pred ceeeeeccCC---------------------------------------------------------------cceeeec
Confidence 9999997542 2222322
Q ss_pred CccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 353 HSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 353 h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
...++.|.-+..+ .++|++.+ |-|||.....++..+. ....|.++.|+|....+|++++.|+.|.+||++...++
T Consensus 147 -~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl 223 (433)
T KOG0268|consen 147 -KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPL 223 (433)
T ss_pred -cccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcc
Confidence 2345566655555 78888764 9999999999999988 66789999999988888999999999999999999988
Q ss_pred EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc
Q 005352 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (701)
Q Consensus 431 ~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~ 510 (701)
......-..+.|+|+|.+-.+++|+.|..++.||++..+.. ......|...|.++.|+| .|+-+++|+.|.+
T Consensus 224 ~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p-------~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDks 295 (433)
T KOG0268|consen 224 KKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP-------LNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKS 295 (433)
T ss_pred ceeeeeccccceecCccccceeeccccccceehhhhhhccc-------chhhcccceeEEEeccCC-Ccchhccccccce
Confidence 77777777889999999889999999999999999875432 223567888999999999 7999999999999
Q ss_pred EEEEeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 511 VRILQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 511 I~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|+||..+.....-.- ..-...|.++.||.|.+||++||.|+.|++|.-...+
T Consensus 296 IRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 296 IRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 999998754322111 1134679999999999999999999999999876544
No 74
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=4.1e-27 Score=230.64 Aligned_cols=245 Identities=20% Similarity=0.424 Sum_probs=207.8
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.+.+|.+.|..+.|-++...|+|||.|..|++|++...+.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------------------------- 209 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------------------------- 209 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh----------------------------------------
Confidence 4678999999999999988999999999999999866531
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f 402 (701)
..+.++.|..+.|+.+.|.+++ ++++++.|+.+++|++.+.+...++. |.+.|+++.|
T Consensus 210 --------------------~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~ 269 (459)
T KOG0288|consen 210 --------------------ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKF 269 (459)
T ss_pred --------------------hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehh
Confidence 2345667788899999999999 99999999999999999999988887 9999999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~ 482 (701)
.. ....+++|+.|.+|++||+....+....-....+..|+.+ ...+++|..|++|++||++........
T Consensus 270 ~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv-------- 338 (459)
T KOG0288|consen 270 KL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSV-------- 338 (459)
T ss_pred hc-cccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEe--------
Confidence 87 5556999999999999999998888776666777777776 557889999999999999988765432
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc--eeeec--ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI--GKYKG--LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 483 ~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~--~~~~~--~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
...+.|+++..++ ++..+++++.|.++.+.|+++.. ..|.. .......+.+.|||++.|+++||.||.|+||++
T Consensus 339 -~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 339 -PLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred -ecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 2235799999999 78888888999999999998543 33322 224455899999999999999999999999999
Q ss_pred CCCC
Q 005352 559 IGHE 562 (701)
Q Consensus 559 ~~~~ 562 (701)
.+++
T Consensus 417 ~tgK 420 (459)
T KOG0288|consen 417 FTGK 420 (459)
T ss_pred cCce
Confidence 9987
No 75
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.1e-25 Score=241.45 Aligned_cols=275 Identities=18% Similarity=0.306 Sum_probs=228.1
Q ss_pred cCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC
Q 005352 203 QGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (701)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~ 282 (701)
...+.+..+.++.+++++.++++++|+..... .....+.||.+.|++++|..-+.+|++|+.|.+++|||..++
T Consensus 208 ~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~------~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 208 DHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGY------LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cchhhhheeecCeEEecCCCceeEEeecccce------EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 44556667778899999999999999854332 222347899999999999877889999999999999999888
Q ss_pred eeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEE
Q 005352 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (701)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 362 (701)
++ .+.+.+|...|.++..
T Consensus 282 ~C--------------------------------------------------------------~~~l~gh~stv~~~~~ 299 (537)
T KOG0274|consen 282 EC--------------------------------------------------------------THSLQGHTSSVRCLTI 299 (537)
T ss_pred cE--------------------------------------------------------------EEEecCCCceEEEEEc
Confidence 53 4667899999999875
Q ss_pred ecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEE
Q 005352 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVT 440 (701)
Q Consensus 363 s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~ 440 (701)
.+. ++++|+.|.+|++|++.++.++.++. |..+|+++..+ +.++++|+.|++|++||+.+++++ ...+|...|.
T Consensus 300 ~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~ 375 (537)
T KOG0274|consen 300 DPF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY 375 (537)
T ss_pred cCc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEE
Confidence 422 78889999999999999999999999 99999999984 789999999999999999999988 4567999999
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEECCCC-eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
++.+.+. ..++.|+.|+.|++||+++. ++... ...|..-+.++.+ .+++|++++.|+.|++||..+.
T Consensus 376 sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t--------l~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 376 SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT--------LQGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred EEEecCc-ceEEeeeeccceEeecCCchhhhhhh--------hcCCccccccccc---ccceeEeccccccEEEeecccC
Confidence 9988765 89999999999999999987 43321 2334455555555 4689999999999999999877
Q ss_pred ceeeeccc-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 520 IGKYKGLR-RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 520 ~~~~~~~~-~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
........ |...|..+++. ...+++++.||.+++||+.+++.
T Consensus 444 ~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 444 ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred ceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 66665554 56888888876 56799999999999999999884
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=3.3e-25 Score=205.71 Aligned_cols=279 Identities=16% Similarity=0.208 Sum_probs=210.5
Q ss_pred cccCcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|......+.++ ++.+.++++|..+.||-.... +. .-++.||++.|+|+....+.++|+||+.|.++++||
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--er-----lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--ER-----LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCC--ce-----eeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 355555555554 566777999999999964222 11 135778999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+++.+..++ -..+|.
T Consensus 81 v~tGk~la~~k---------------------------------------------------------------~~~~Vk 97 (327)
T KOG0643|consen 81 VETGKQLATWK---------------------------------------------------------------TNSPVK 97 (327)
T ss_pred cCCCcEEEEee---------------------------------------------------------------cCCeeE
Confidence 99998765543 235788
Q ss_pred EEEEecCC-eEEEEEC-----CCcEEEEECC-------CCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 359 DLSWSKNN-YLLSASI-----DKTVRLWRVG-------NDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~-----dg~I~iWd~~-------~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
.+.|+.+| +++.+.. .+.|.++|++ ..++...+. +.+.++.+-|.| -+.+|++|..||.|.+||+
T Consensus 98 ~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da 176 (327)
T KOG0643|consen 98 RVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDA 176 (327)
T ss_pred EEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEc
Confidence 89999999 4444433 3579999998 445455444 778999999999 9999999999999999999
Q ss_pred CCCcEE-E-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 425 LSCHVV-D-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 425 ~~~~~~-~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
++++.. . ...|...|+.++++|+..++++++.|.+-++||+.+-..+.... ...++++.+++|. ..++
T Consensus 177 ~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~---------te~PvN~aaisP~-~d~V 246 (327)
T KOG0643|consen 177 RTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT---------TERPVNTAAISPL-LDHV 246 (327)
T ss_pred ccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee---------ecccccceecccc-cceE
Confidence 998544 3 34678899999999999999999999999999999866543322 2357889999994 4555
Q ss_pred EEEECCCcEEEEeCCc--------------cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 503 MVSCADSQVRILQGPN--------------VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~--------------~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
+.|+.....-+=-... ....-...+|-++|++++|+|+|+..++|++||.|++.-++.
T Consensus 247 ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 247 ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred EecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 5554432222211111 111112234899999999999999999999999999987654
No 77
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=3e-26 Score=216.40 Aligned_cols=309 Identities=17% Similarity=0.286 Sum_probs=230.3
Q ss_pred ccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccccee
Q 005352 241 YKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (701)
Q Consensus 241 ~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (701)
+....+..|++++.+.+|+|||.++|||+.|..|+|.|++..-..... . .+..+..
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~--~-------em~~~~~--------------- 158 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKP--K-------EMISGDT--------------- 158 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcch--h-------hhccCCc---------------
Confidence 334467789999999999999999999999999999998742100000 0 0000000
Q ss_pred eEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCee---eeeecCCCC
Q 005352 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHC---LRVFPHSNY 396 (701)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~---~~~~~h~~~ 396 (701)
+.....++++..|.++|+++.|+|.. .|++++.|++|+++|+..... .+.|+...+
T Consensus 159 --------------------qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~ 218 (430)
T KOG0640|consen 159 --------------------QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEP 218 (430)
T ss_pred --------------------ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccce
Confidence 00013467889999999999999988 999999999999999976543 344557789
Q ss_pred eEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE----EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeee
Q 005352 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD----WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL 472 (701)
Q Consensus 397 V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~----~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~ 472 (701)
|.++.|+| .+.+|+.|....++++||+.+-++.. ...|.+.|+++.|++.++..++|+.||.|++||--.+++..
T Consensus 219 vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~ 297 (430)
T KOG0640|consen 219 VRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR 297 (430)
T ss_pred eeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHH
Confidence 99999999 99999999999999999999988763 33578899999999999999999999999999987766532
Q ss_pred eeeEEeecccCC-CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc--ceeeecccCC---CCeEEEEEecCCCEEEE
Q 005352 473 DAEICVHSKKKA-PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--IGKYKGLRRS---GNQLSACFTSDGKHIVS 546 (701)
Q Consensus 473 ~~~~~~~~~~~~-~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~---~~v~~l~~s~dg~~l~s 546 (701)
. .... ....|.+..|.. +++++++.+.|..+++|.+.+. ...+.+.+.. ..-+...|.....|++.
T Consensus 298 t-------~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~ 369 (430)
T KOG0640|consen 298 T-------IGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLF 369 (430)
T ss_pred H-------HHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEc
Confidence 2 1222 335688888888 8999999999999999998754 4455554322 23355678888888887
Q ss_pred EeC-CCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcc
Q 005352 547 AGE-DSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQE 625 (701)
Q Consensus 547 gs~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~ 625 (701)
-.+ .+.+.-||-++..... +. ..-+...++.+..+|. ...
T Consensus 370 pDEas~slcsWdaRtadr~~------l~-----------------------------slgHn~a~R~i~HSP~----~p~ 410 (430)
T KOG0640|consen 370 PDEASNSLCSWDARTADRVA------LL-----------------------------SLGHNGAVRWIVHSPV----EPA 410 (430)
T ss_pred cccccCceeeccccchhhhh------hc-----------------------------ccCCCCCceEEEeCCC----CCc
Confidence 653 4678999988765211 00 0111233455556775 678
Q ss_pred ccccCCCCcccCCCCc
Q 005352 626 YVFESFPKGCATWPEE 641 (701)
Q Consensus 626 ~~~~s~d~~~~~W~~~ 641 (701)
|++|+.|...++|-..
T Consensus 411 FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 411 FMTCSDDFRARFWYRR 426 (430)
T ss_pred eeeecccceeeeeeec
Confidence 9999999999999753
No 78
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.4e-24 Score=235.72 Aligned_cols=254 Identities=14% Similarity=0.232 Sum_probs=189.8
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCee-eeeecCCCCCCc
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDER-LTEVDIPEIDPS 296 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~-~~~~~~~~~~~~ 296 (701)
|+.++.|++|+..+.. ....+.+|.+.|.+++|+|+ +.+||||+.||+|+|||+.++.. ...
T Consensus 50 GG~~gvI~L~~~~r~~-------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~--------- 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE--------- 113 (568)
T ss_pred CCceeEEEeeecCCCc-------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc---------
Confidence 5667889999865421 22457899999999999997 78999999999999999976421 000
Q ss_pred eeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECC
Q 005352 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASID 374 (701)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~d 374 (701)
...++..+.+|...|.+++|+|++ .|++++.|
T Consensus 114 ----------------------------------------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 114 ----------------------------------------------IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred ----------------------------------------------cccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 003455678899999999999988 56799999
Q ss_pred CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEE-----EEEeeCC
Q 005352 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTA-----VCYRPDG 448 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~-----i~~sp~g 448 (701)
++|+|||+++++.+..+.|...|.+++|+| ++.+|++++.|+.|+|||+++++.+. +..|.+.+.+ ..|++++
T Consensus 148 gtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred CeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence 999999999998888887888999999999 99999999999999999999998774 4456655433 2345888
Q ss_pred CeEEEEecCC----cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc-eee
Q 005352 449 QGGIVGSMMG----DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI-GKY 523 (701)
Q Consensus 449 ~~l~~gs~dg----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~-~~~ 523 (701)
.+|++++.++ .|+|||++....... ... .......+. ..+.++++.++++|+.|+.|++|++.... ..+
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~----~~~-ld~~~~~L~-p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKNTTSALV----TMS-IDNASAPLI-PHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCCCCCceE----EEE-ecCCccceE-EeeeCCCCCEEEEEECCCeEEEEEccCCcEEee
Confidence 9999987764 799999986322111 101 111112222 23445578899999999999999986432 223
Q ss_pred ecccCCCCeEEEEEecCC
Q 005352 524 KGLRRSGNQLSACFTSDG 541 (701)
Q Consensus 524 ~~~~~~~~v~~l~~s~dg 541 (701)
....+..++.+++|.|..
T Consensus 301 ~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 301 NEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred cccccCCCccceEEcccc
Confidence 333466788899999974
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.9e-25 Score=231.37 Aligned_cols=273 Identities=21% Similarity=0.330 Sum_probs=221.8
Q ss_pred ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005352 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (701)
Q Consensus 210 ~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~ 289 (701)
..+....+..+-...|.+|+..... ...+ ..-+...|+++.|+++|.+||.|..+|.|.|||..+.+.
T Consensus 184 dWss~n~laValg~~vylW~~~s~~--v~~l-----~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~----- 251 (484)
T KOG0305|consen 184 DWSSANVLAVALGQSVYLWSASSGS--VTEL-----CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK----- 251 (484)
T ss_pred hcccCCeEEEEecceEEEEecCCCc--eEEe-----EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-----
Confidence 3444556666777889999864432 1111 122488999999999999999999999999999987643
Q ss_pred CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcC-CccCeEEEEEecCCeE
Q 005352 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG-HSGEILDLSWSKNNYL 368 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~l~~s~~~~l 368 (701)
+..+.+ |...|-+++|. ...+
T Consensus 252 ---------------------------------------------------------~~~~~~~h~~rvg~laW~-~~~l 273 (484)
T KOG0305|consen 252 ---------------------------------------------------------TRTLRGSHASRVGSLAWN-SSVL 273 (484)
T ss_pred ---------------------------------------------------------cccccCCcCceeEEEecc-CceE
Confidence 334455 89999999998 4489
Q ss_pred EEEECCCcEEEEECCCCeeeee-ec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc-EEEEecCCCcEEEEEEe
Q 005352 369 LSASIDKTVRLWRVGNDHCLRV-FP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVDWVDIRQIVTAVCYR 445 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~~~~~~-~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~i~~i~~s 445 (701)
.+|+.|+.|..+|++..+.... +. |...|..++|++ ++++|++|+.|+.+.|||..... ...+..|...|.+++|+
T Consensus 274 ssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awc 352 (484)
T KOG0305|consen 274 SSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWC 352 (484)
T ss_pred EEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeC
Confidence 9999999999999998876555 44 999999999999 99999999999999999996554 44778899999999999
Q ss_pred e-CCCeEEEE--ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCccce
Q 005352 446 P-DGQGGIVG--SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVIG 521 (701)
Q Consensus 446 p-~g~~l~~g--s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~~~ 521 (701)
| ....||+| +.|+.|++||..++.... .......|..+.|++....++.+.+ .++.|.||+..+...
T Consensus 353 P~q~~lLAsGGGs~D~~i~fwn~~~g~~i~---------~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 353 PWQSGLLATGGGSADRCIKFWNTNTGARID---------SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred CCccCceEEcCCCcccEEEEEEcCCCcEec---------ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 9 45577775 459999999999887643 2234478999999995444544433 378999999998888
Q ss_pred eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 522 KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 522 ~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.....+|...|..++++|||..|++|+.|.++++|++-+..
T Consensus 424 ~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 424 VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence 77788899999999999999999999999999999998854
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9e-24 Score=191.22 Aligned_cols=285 Identities=17% Similarity=0.243 Sum_probs=224.1
Q ss_pred eeeecCccccccccccceEEEEEccCccch----hhh----cccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKE----LSA----LYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~----~~~----~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.++.+.+...++|+...+.+|-.+..-... ... ......-+.|++.|.|.+|+|+|++||||+.|.+|++.-
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~ 117 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLP 117 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEe
Confidence 456777788888999999999887532211 111 111223467999999999999999999999999999987
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
++...+... .+-.+|.-|.+.|.
T Consensus 118 fn~dt~~~~---------------------------------------------------------g~dle~nmhdgtir 140 (350)
T KOG0641|consen 118 FNADTCNAT---------------------------------------------------------GHDLEFNMHDGTIR 140 (350)
T ss_pred ccccccccc---------------------------------------------------------CcceeeeecCCcee
Confidence 755431100 23345667999999
Q ss_pred EEEEecC---C--eEEEEE-CCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 359 DLSWSKN---N--YLLSAS-IDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 359 ~l~~s~~---~--~l~s~s-~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
+++|..+ + .|++++ .|..|++-|...++....+. |.+.|.++-- - ++-.|++|+.|.+|++||++-..++.
T Consensus 141 dl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys-w-n~~m~~sgsqdktirfwdlrv~~~v~ 218 (350)
T KOG0641|consen 141 DLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS-W-NGAMFASGSQDKTIRFWDLRVNSCVN 218 (350)
T ss_pred eeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE-e-cCcEEEccCCCceEEEEeeeccceee
Confidence 9999754 2 566554 46778888988998888776 8998888743 2 78899999999999999999888776
Q ss_pred EecC--------CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 432 WVDI--------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 432 ~~~~--------~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
..+. ...|.+++..|.|+.|++|..|..+.+||++.+.+.+. ...|...|.++.|+| ...+++
T Consensus 219 ~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~--------f~phsadir~vrfsp-~a~yll 289 (350)
T KOG0641|consen 219 TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR--------FHPHSADIRCVRFSP-GAHYLL 289 (350)
T ss_pred eccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee--------eCCCccceeEEEeCC-CceEEE
Confidence 5542 25699999999999999999999999999999886543 345668899999999 789999
Q ss_pred EEECCCcEEEEeCCc----cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 504 VSCADSQVRILQGPN----VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~----~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
+++.|..|++-|+.. .........|...+..+.|+|..--+++.+.|.++.+|-++
T Consensus 290 t~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 290 TCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999999999862 22233334588899999999999999999999999999864
No 81
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=4.9e-24 Score=230.77 Aligned_cols=256 Identities=15% Similarity=0.198 Sum_probs=190.3
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
|-..|.....++++..+++++.+..+..|+...+..+....
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~--------------------------------------- 59 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHT--------------------------------------- 59 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeecc---------------------------------------
Confidence 33456667778888888999999999999865543111100
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEec-CC-eEEEEECCCcEEEEECCCCe-------eeeeec-CCCCeE
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDH-------CLRVFP-HSNYVT 398 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~-~l~s~s~dg~I~iWd~~~~~-------~~~~~~-h~~~V~ 398 (701)
...++. .....+.+|.+.|++++|+| ++ +|++|+.|++|++||+.++. ++..+. |...|.
T Consensus 60 ---------~~G~~~-~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~ 129 (493)
T PTZ00421 60 ---------DYGKLA-SNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG 129 (493)
T ss_pred ---------ccccCC-CCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE
Confidence 000000 11234679999999999999 66 99999999999999997652 344444 899999
Q ss_pred EEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE-ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
+++|+|..+++|++++.|++|+|||+.+++.+.. ..|...|.+++|+|+|..|++++.|+.|++||+++++.....
T Consensus 130 ~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl--- 206 (493)
T PTZ00421 130 IVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV--- 206 (493)
T ss_pred EEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE---
Confidence 9999994457999999999999999999887644 457889999999999999999999999999999987654321
Q ss_pred eecccCCCC-CCeeEEEEecCCCCEEEEEE----CCCcEEEEeCCccceeeecc--cCCCCeEEEEEecCCCEEEEEe-C
Q 005352 478 VHSKKKAPC-KRITGFQFLPQDSSKVMVSC----ADSQVRILQGPNVIGKYKGL--RRSGNQLSACFTSDGKHIVSAG-E 549 (701)
Q Consensus 478 ~~~~~~~~~-~~i~~l~~~p~~~~~l~~~s----~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~s~dg~~l~sgs-~ 549 (701)
..|. ..+..+.|.++ ...+++++ .|+.|++||+++....+... .....+....|++++++|++++ .
T Consensus 207 -----~~H~~~~~~~~~w~~~-~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkg 280 (493)
T PTZ00421 207 -----EAHASAKSQRCLWAKR-KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKG 280 (493)
T ss_pred -----ecCCCCcceEEEEcCC-CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeC
Confidence 1122 23456778884 45555543 47999999998655443322 2334566677999999999887 5
Q ss_pred CCcEEEEeCCCCC
Q 005352 550 DSNVYMWNCIGHE 562 (701)
Q Consensus 550 Dg~I~iWd~~~~~ 562 (701)
|+.|++|++.+++
T Consensus 281 Dg~Iriwdl~~~~ 293 (493)
T PTZ00421 281 EGNIRCFELMNER 293 (493)
T ss_pred CCeEEEEEeeCCc
Confidence 9999999998876
No 82
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=8.6e-26 Score=224.80 Aligned_cols=265 Identities=18% Similarity=0.295 Sum_probs=211.0
Q ss_pred eecccCcceeeecCccc---cccccccceEEEEEccCccchhh---hcccCceeccCCCcEEEEEEccC-CCEEEEEeCC
Q 005352 199 VVDKQGEGERVRLNEED---AMFCSKVQRVKVYHCKKRSKELS---ALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDD 271 (701)
Q Consensus 199 ~~~~~~~~~~~~~~~~~---~~~~~~d~~v~vw~~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~D 271 (701)
.+.|+++++++++.++. +++.+..+.|.|||+.+...... .....-.|.+|++.-++|+|++. .-+|++|+.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 46799999999987753 44568889999999976543332 23444578999998899999985 3479999999
Q ss_pred CcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEc
Q 005352 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (701)
Q Consensus 272 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (701)
++|++||+........ ...+...+.
T Consensus 200 ~~i~lwdi~~~~~~~~-------------------------------------------------------~~~p~~~~~ 224 (422)
T KOG0264|consen 200 HTICLWDINAESKEDK-------------------------------------------------------VVDPKTIFS 224 (422)
T ss_pred CcEEEEeccccccCCc-------------------------------------------------------cccceEEee
Confidence 9999999976532100 014667889
Q ss_pred CCccCeEEEEEecCC--eEEEEECCCcEEEEECCC--Ceeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 352 GHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGN--DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~--~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
+|...|.+++|++.. .|++++.|+.+.|||+++ .++..... |...|.|++|+|.++.+||+|+.|++|.+||+|+
T Consensus 225 ~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 225 GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN 304 (422)
T ss_pred cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence 999999999999976 999999999999999995 33433333 9999999999999999999999999999999997
Q ss_pred Cc--EEEEecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCeeee------eeeEEeecccCCCCCCeeEEEEecC
Q 005352 427 CH--VVDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLEL------DAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 427 ~~--~~~~~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
-. +..+..|...|..|.|+|.. ..|++++.|+.+.+||+..-.... ..+..+.-...+|...|..+.|+|.
T Consensus 305 L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ 384 (422)
T KOG0264|consen 305 LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN 384 (422)
T ss_pred cccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCC
Confidence 54 44677899999999999964 577888899999999997532221 1122333345678889999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCc
Q 005352 498 DSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~ 518 (701)
.+..|++.+.|+.+.||....
T Consensus 385 ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 385 EPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCeEEEEecCCceEEEeeccc
Confidence 899999999999999999764
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.8e-25 Score=224.47 Aligned_cols=255 Identities=18% Similarity=0.308 Sum_probs=196.3
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.+++|+..|.++++.|.|-.|+|||.|..|++||+.........
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~------------------------------------ 205 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS------------------------------------ 205 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh------------------------------------
Confidence 46789999999999999999999999999999999764311000
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee------------
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF------------ 391 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~------------ 391 (701)
| +.+.- .....|.++.|++.+ .|+..+.....+|+|-...+.+...
T Consensus 206 ---------------f----r~l~P--~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nT 264 (641)
T KOG0772|consen 206 ---------------F----RQLQP--CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNT 264 (641)
T ss_pred ---------------h----hccCc--ccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhcc
Confidence 0 11111 233478999999998 8888888889999997655544333
Q ss_pred -cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc-EEEEe------cCCCcEEEEEEeeCCCeEEEEecCCcEEEE
Q 005352 392 -PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVDWV------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463 (701)
Q Consensus 392 -~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-~~~~~------~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~ 463 (701)
.|...++|.+|+|.+...|++++.||++||||+...+ ....+ +.+-+++.++|+|+|+.||+|..||.|.+|
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 2888899999999888899999999999999997643 22222 234568999999999999999999999999
Q ss_pred ECCCCeeeeeeeEEeecccCCCCC--CeeEEEEecCCCCEEEEEECCCcEEEEeCCccceee---ecccCCCCeEEEEEe
Q 005352 464 NVSDNHLELDAEICVHSKKKAPCK--RITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY---KGLRRSGNQLSACFT 538 (701)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~--~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~---~~~~~~~~v~~l~~s 538 (701)
+........ .+. .+..|.. .|+++.|++ ++++|++-+.|+++++||+++....+ .+.....+-+.++||
T Consensus 345 ~~~~~~v~p--~~~---vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 345 DKGSRTVRP--VMK---VKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred ecCCccccc--ceE---eeeccCCCCceeEEEecc-ccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC
Confidence 985433221 111 1334444 899999999 89999999999999999998655443 344455677899999
Q ss_pred cCCCEEEEEe------CCCcEEEEeCCCCC
Q 005352 539 SDGKHIVSAG------EDSNVYMWNCIGHE 562 (701)
Q Consensus 539 ~dg~~l~sgs------~Dg~I~iWd~~~~~ 562 (701)
|+.++|+||+ ..|.+++||-.+-+
T Consensus 419 Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 419 PDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred CCceEEEecccccCCCCCceEEEEecccee
Confidence 9999999985 34678999876655
No 84
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=2e-24 Score=212.93 Aligned_cols=275 Identities=19% Similarity=0.234 Sum_probs=226.6
Q ss_pred ceeeecCc--cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCe
Q 005352 206 GERVRLNE--EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (701)
Q Consensus 206 ~~~~~~~~--~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~ 283 (701)
+.++...+ ...++|+.|..+.++|..... +. ..++||...|+.+.|+|+...+++++.|-.|+||.+....
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q--~l-----~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQ--IL-----ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhh--hh-----hhccCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence 34454444 678889999999999865432 11 3578899999999999999999999999999999986543
Q ss_pred eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe
Q 005352 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (701)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 363 (701)
.......|..+|+.+..+
T Consensus 295 --------------------------------------------------------------~~~~~~~h~~~V~~ls~h 312 (506)
T KOG0289|consen 295 --------------------------------------------------------------EPTSSRPHEEPVTGLSLH 312 (506)
T ss_pred --------------------------------------------------------------Cccccccccccceeeeec
Confidence 122345699999999999
Q ss_pred cCC-eEEEEECCCcEEEEECCCCeeeeeecCC---CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCc
Q 005352 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFPHS---NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQI 438 (701)
Q Consensus 364 ~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~---~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~ 438 (701)
|+| ||++++.|++..+.|++++.++....+. -.+++.+|+| |+.+|.+|..||.|+|||+.++..+ .+.+|.++
T Consensus 313 ~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~ 391 (506)
T KOG0289|consen 313 PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGP 391 (506)
T ss_pred cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCc
Confidence 999 9999999999999999999999888764 3589999999 9999999999999999999988766 56679999
Q ss_pred EEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC-
Q 005352 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP- 517 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~- 517 (701)
|..|+|+.+|-+|++++.|+.|++||++..+...... ......+..+.|.+ .+.+|++++.+=+|++++..
T Consensus 392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~-------l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ-------LDEKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred eeEEEeccCceEEEEEecCCeEEEEEehhhcccceee-------ccccccceeEEEcC-CCCeEEeecceeEEEEEeccc
Confidence 9999999999999999999999999999765332211 11223688999998 78999999888888888743
Q ss_pred -ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 518 -NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 518 -~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
..........|.+..+.+.|....++++++|.|..++++.+
T Consensus 464 k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 464 KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 33444444557788999999999999999999999998864
No 85
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=5.3e-25 Score=203.82 Aligned_cols=276 Identities=18% Similarity=0.247 Sum_probs=225.5
Q ss_pred EEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe
Q 005352 348 HEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd 423 (701)
..+++|...|.+++|+-+| .|++|+.|+++.+|++.......... |.+.|-.++|+|...+.|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4567899999999999999 99999999999999998875554443 8889999999998999999999999999999
Q ss_pred CCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 424 VLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 424 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
++.++++........-..++|+|+|++++++..|..|.+.|.++.+.....+ ....+.-+.|+. ++.+++
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~---------~~~e~ne~~w~~-~nd~Ff 163 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ---------FKFEVNEISWNN-SNDLFF 163 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc---------ccceeeeeeecC-CCCEEE
Confidence 9999999888877777889999999999999999999999999877654322 224466788884 678888
Q ss_pred EEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCce
Q 005352 504 VSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNAS 583 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (701)
.....|.|.|.....++.......|.....|+.|+|+|+|+|+|+.|..+.+||++.-- ..+.+
T Consensus 164 lt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi--------C~R~i-------- 227 (313)
T KOG1407|consen 164 LTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI--------CERCI-------- 227 (313)
T ss_pred EecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh--------hheee--------
Confidence 88888999999999888888888899999999999999999999999999999987543 11111
Q ss_pred EEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhh
Q 005352 584 IAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFL 663 (701)
Q Consensus 584 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (701)
....-+++.+.|+-+ +++++++|.|.-|-|=..+++..+..++..
T Consensus 228 --------------------sRldwpVRTlSFS~d----g~~lASaSEDh~IDIA~vetGd~~~eI~~~----------- 272 (313)
T KOG1407|consen 228 --------------------SRLDWPVRTLSFSHD----GRMLASASEDHFIDIAEVETGDRVWEIPCE----------- 272 (313)
T ss_pred --------------------ccccCceEEEEeccC----cceeeccCccceEEeEecccCCeEEEeecc-----------
Confidence 001235667788886 788899999999988777888777766333
Q ss_pred hcccccccccCCCccEEEEecCC
Q 005352 664 KSSCLCTTSSHAWGLVIVTAGWD 686 (701)
Q Consensus 664 ~~~~~~~~~~~~~g~~ivTgg~D 686 (701)
++-+.+++.+. -.+|+=|+.|
T Consensus 273 -~~t~tVAWHPk-~~LLAyA~dd 293 (313)
T KOG1407|consen 273 -GPTFTVAWHPK-RPLLAYACDD 293 (313)
T ss_pred -CCceeEEecCC-CceeeEEecC
Confidence 45566677777 6677766655
No 86
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.3e-25 Score=217.75 Aligned_cols=381 Identities=15% Similarity=0.211 Sum_probs=258.4
Q ss_pred EEEEecccchhhHHHHHhhccchhhHHHHHHhHHhhhccceeeecccC--cceeeecCc-cccccccccceEE--EEEcc
Q 005352 157 YLENTSELLPLMDEIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQG--EGERVRLNE-EDAMFCSKVQRVK--VYHCK 231 (701)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~d~~v~--vw~~~ 231 (701)
...+..+++++++.+.+......++..||+.++.+.++...|+....+ +.++-...+ +.++ -+.-+.|- --.+.
T Consensus 116 ~~~~~nr~rk~r~~e~e~~~~~~~Y~~RLr~~F~k~~~~PkWA~~~~~~~~~DDe~e~s~d~lL-~tt~~yi~s~s~~Lp 194 (514)
T KOG2055|consen 116 ADKMTNRLRKLRTTENEGLLSGKEYKGRLREQFQKRYPVPKWAKKASGKDSEDDEEEGSLDDLL-KTTVGYIDSRSKLLP 194 (514)
T ss_pred hhhhhhhhhhccccccccccchHHHHHHHHHHHHHhcCCCcccccccccccccccccccHHHHH-HhhhcccccccccCC
Confidence 346667788888887777788889999999999999987777654333 111111111 0011 11111111 00000
Q ss_pred CccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec--CeeeeeecCCCCCCceeEEeeccCCCcc
Q 005352 232 KRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE--DERLTEVDIPEIDPSCIYFTVNHLSELK 309 (701)
Q Consensus 232 ~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (701)
.....+..+.....-..-.+.|++|.|+|..+.|++||.||+++||.+.. +..++.+.+...+..+..|.+++...+.
T Consensus 195 ~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 195 PGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred CceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEE
Confidence 00111111111111122357899999999999999999999999999864 4567777777777777777775542221
Q ss_pred eeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc-cCeEEEEEecCC-eEEEEECCCcEEEEECCCCee
Q 005352 310 PLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS-GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHC 387 (701)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~ 387 (701)
....+ ..+ ..|+..... ...+....|+. ..+....+++++ +|+..+..|.|.|....+++.
T Consensus 275 ---~s~rr-ky~-----------ysyDle~ak--~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el 337 (514)
T KOG2055|consen 275 ---TSGRR-KYL-----------YSYDLETAK--VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL 337 (514)
T ss_pred ---ecccc-eEE-----------EEeeccccc--cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh
Confidence 11111 111 111111110 02233334444 456777889998 999999999999999999999
Q ss_pred eeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcE--EEEEEeeCCCeEEEEecCCcEEEEEC
Q 005352 388 LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV--TAVCYRPDGQGGIVGSMMGDCRFYNV 465 (701)
Q Consensus 388 ~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i--~~i~~sp~g~~l~~gs~dg~v~i~d~ 465 (701)
+..++..+.|..++|+. +++.|++.+.+|.|.+||++...++......+.| +++|.++++.+||+|+..|.|.|||.
T Consensus 338 i~s~KieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 338 ITSFKIEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred hheeeeccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 99999999999999997 8999999999999999999999888666555554 56778899999999999999999997
Q ss_pred CCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC--CCcEEEEeCCccc--eeeec-ccCCCCeEEEEEecC
Q 005352 466 SDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA--DSQVRILQGPNVI--GKYKG-LRRSGNQLSACFTSD 540 (701)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~--dg~I~iwd~~~~~--~~~~~-~~~~~~v~~l~~s~d 540 (701)
.+.... ....+..........|++++|+| +.++|+.++. +..+++..+.... ..+.. ...-+.|+|++|+|.
T Consensus 417 ~s~~~s--~~PkPik~~dNLtt~Itsl~Fn~-d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~ 493 (514)
T KOG2055|consen 417 NSCFAS--TNPKPIKTVDNLTTAITSLQFNH-DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN 493 (514)
T ss_pred chhhcc--CCCCchhhhhhhheeeeeeeeCc-chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC
Confidence 653211 11111111223446799999999 7888888776 7889998876432 22221 224568999999999
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 005352 541 GKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 541 g~~l~sgs~Dg~I~iWd~~ 559 (701)
+.+|+.|.++|.+.+|.+.
T Consensus 494 sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 494 SGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CceEEeecCCCceeeEeec
Confidence 9999999999999999875
No 87
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3e-24 Score=202.85 Aligned_cols=244 Identities=23% Similarity=0.366 Sum_probs=195.6
Q ss_pred CCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 249 HDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 249 H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
-...|.+|+|||. ..+|+.++.||+||+|+++.....
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~------------------------------------------ 63 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL------------------------------------------ 63 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcc------------------------------------------
Confidence 5678999999994 556668999999999999874210
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCC
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVD 406 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~ 406 (701)
.+ .....|.++|.+++|+.+| .+++|+.|+.+++||+.+++....-.|..+|.++.|-+ .
T Consensus 64 -----------------~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~-~ 124 (347)
T KOG0647|consen 64 -----------------VP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP-G 124 (347)
T ss_pred -----------------cc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-C
Confidence 00 2235689999999999999 99999999999999999998887777999999999987 5
Q ss_pred CC--EEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 407 DN--YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 407 ~~--~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
.. .|++|+.|.+|+.||++....+..+...+.+.++..-. ..++++..+..|.+|++++....... ....
T Consensus 125 ~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~vynL~n~~te~k~------~~Sp 196 (347)
T KOG0647|consen 125 MNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIAVYNLENPPTEFKR------IESP 196 (347)
T ss_pred CCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEEEEEcCCCcchhhh------hcCc
Confidence 55 89999999999999999999998888889888886643 48899999999999999876433211 1122
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc--c--eeeecccC-------CCCeEEEEEecCCCEEEEEeCCCcE
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--I--GKYKGLRR-------SGNQLSACFTSDGKHIVSAGEDSNV 553 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~--~--~~~~~~~~-------~~~v~~l~~s~dg~~l~sgs~Dg~I 553 (701)
....+.+++..+ +....+.|+-+|.+-|..+... . ..|+.|+. --.|++++|+|....|+|++.||++
T Consensus 197 Lk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 197 LKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF 275 (347)
T ss_pred ccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceE
Confidence 335678888888 5666699999999999877643 3 34444442 1257889999999999999999999
Q ss_pred EEEeCCCCC
Q 005352 554 YMWNCIGHE 562 (701)
Q Consensus 554 ~iWd~~~~~ 562 (701)
.+||-+...
T Consensus 276 ~FWDkdar~ 284 (347)
T KOG0647|consen 276 SFWDKDART 284 (347)
T ss_pred EEecchhhh
Confidence 999976554
No 88
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=8.1e-26 Score=218.01 Aligned_cols=287 Identities=13% Similarity=0.204 Sum_probs=228.9
Q ss_pred eeccCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 245 EIQAHDGSILTMKFSPDG-QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
.|.||...|.|++=+|.. ..+|||+.||.|+|||+.+..
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~---------------------------------------- 100 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE---------------------------------------- 100 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhh----------------------------------------
Confidence 357899999999999976 679999999999999997753
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEe
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~ 403 (701)
.+..|..|.+.|..|++.. +.+++++.|++|+.|-+.- .++.++.....+..|.-+
T Consensus 101 ----------------------~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~ 156 (433)
T KOG0268|consen 101 ----------------------CIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHH 156 (433)
T ss_pred ----------------------hhheeecccCceeeEEecc-cceEEecCCcceeeeeccC-Ccceeeeccccccccccc
Confidence 3456778999999999976 6899999999999999866 477777778888888887
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-cCCCcEEEEEEeeCCC-eEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 404 p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
. .++.|+|++.+ |.|||..-...+..+ -....|.++.|+|... .|+++..|+.|.+||+++........+.
T Consensus 157 ~-~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~---- 229 (433)
T KOG0268|consen 157 R-KNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT---- 229 (433)
T ss_pred c-ccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee----
Confidence 7 78889998754 999999766665433 3456799999999665 5566669999999999998765443332
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc-cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL-RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
..-+.|+|+| ..-.++++..|..++.||++.+......+ .|.+.|.++.|+|.|+-+++||.|.+|+||.++.
T Consensus 230 -----mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 230 -----MRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred -----ccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCC
Confidence 3346799999 88899999999999999998665554432 3888999999999999999999999999999887
Q ss_pred CCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCC
Q 005352 561 HEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPE 640 (701)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~ 640 (701)
+.... ..+......+..+.||-+ ++.++++|.|+.+++|..
T Consensus 304 ~~SRd-----------------------------------iYhtkRMq~V~~Vk~S~D----skyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 304 GHSRD-----------------------------------IYHTKRMQHVFCVKYSMD----SKYIISGSDDGNVRLWKA 344 (433)
T ss_pred Ccchh-----------------------------------hhhHhhhheeeEEEEecc----ccEEEecCCCcceeeeec
Confidence 76211 122223344566677776 788899999999999997
Q ss_pred ccCCCCc
Q 005352 641 EKLPALS 647 (701)
Q Consensus 641 ~~~~~~~ 647 (701)
...+.+.
T Consensus 345 ~Aseklg 351 (433)
T KOG0268|consen 345 KASEKLG 351 (433)
T ss_pred chhhhcC
Confidence 6554443
No 89
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=1.5e-24 Score=236.92 Aligned_cols=300 Identities=21% Similarity=0.274 Sum_probs=231.3
Q ss_pred cCCCcEEEEEEccCCCEEEEEe--CCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEee
Q 005352 248 AHDGSILTMKFSPDGQYLASAG--DDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs--~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (701)
.++..|.++..+|||..+|||| .||.++||+.+.--. +..
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~--~~~------------------------------------ 52 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD--EKE------------------------------------ 52 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccc--hhh------------------------------------
Confidence 3566799999999999999999 899999999754210 000
Q ss_pred ecCCccEEEcCCccccc-cCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCC------------------C
Q 005352 326 RTSESACVVFPPKVFRI-LEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN------------------D 385 (701)
Q Consensus 326 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~------------------~ 385 (701)
.... ..+.+.....|.+.|.|+.|+||| +||+|+.|+.|.||.... .
T Consensus 53 -------------~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~w 119 (942)
T KOG0973|consen 53 -------------EKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESW 119 (942)
T ss_pred -------------hhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccccccccccee
Confidence 0000 126778888999999999999999 999999999999998762 0
Q ss_pred eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEE
Q 005352 386 HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463 (701)
Q Consensus 386 ~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~ 463 (701)
+++..+. |...|..++|+| ++.+|++++.|++|.|||..+.+.+ .+.+|.+.|..+.|.|-|++|++-+.|++|++|
T Consensus 120 k~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvw 198 (942)
T KOG0973|consen 120 KVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVW 198 (942)
T ss_pred eEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEE
Confidence 2333333 999999999999 9999999999999999999998766 566799999999999999999999999999999
Q ss_pred ECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC----CCcEEEEeCCccceeeecccCCCCeEEEEEec
Q 005352 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA----DSQVRILQGPNVIGKYKGLRRSGNQLSACFTS 539 (701)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~----dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 539 (701)
.+.+.... ..+.-..........+..+.|+| ++++|++... -..+.|.+-.+........+|..++.++.|+|
T Consensus 199 rt~dw~i~--k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 199 RTSDWGIE--KSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred Ecccceee--EeeccchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeCh
Confidence 97764332 22222222233445678899999 7899988654 45688888877777777778999999999998
Q ss_pred C-----CC------------EEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCcc
Q 005352 540 D-----GK------------HIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQL 602 (701)
Q Consensus 540 d-----g~------------~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 602 (701)
. .+ .+|+|+.|++|.||.....++. ...
T Consensus 276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl-----------------------------------~vi 320 (942)
T KOG0973|consen 276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL-----------------------------------FVI 320 (942)
T ss_pred HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch-----------------------------------hhh
Confidence 2 11 5789999999999997555421 112
Q ss_pred ccCCCCCCCccccCCCccccCccccccCCCCcccCCCCc
Q 005352 603 HVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEE 641 (701)
Q Consensus 603 ~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~ 641 (701)
+..-..++..++|+|+ |-.++.+|.||++.+..++
T Consensus 321 ~~lf~~SI~DmsWspd----G~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 321 HNLFNKSIVDMSWSPD----GFSLFACSLDGTVALIHFE 355 (942)
T ss_pred hhhhcCceeeeeEcCC----CCeEEEEecCCeEEEEEcc
Confidence 3334556777888887 6667889999998764443
No 90
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=8.2e-24 Score=200.86 Aligned_cols=241 Identities=18% Similarity=0.291 Sum_probs=199.9
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
-+..|..|.|+|.+..|+.++.||.+++|++........
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~----------------------------------------- 50 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK----------------------------------------- 50 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh-----------------------------------------
Confidence 467899999999999999999999999999987642211
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCC
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDN 408 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~ 408 (701)
..|..++++++|.++..+++|+.||.|+.+|+.+++....-.|..+|+||.+++ ..+
T Consensus 51 ----------------------~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~ 107 (323)
T KOG1036|consen 51 ----------------------FKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVG 107 (323)
T ss_pred ----------------------eecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec-cCC
Confidence 237889999999998899999999999999999999988888999999999999 788
Q ss_pred EEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCC
Q 005352 409 YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (701)
Q Consensus 409 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 488 (701)
.+++|+.|++|++||.+....+........|.++.. .|+.|++|+.+..+.+||+++..... +.........
T Consensus 108 ~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~------q~reS~lkyq 179 (323)
T KOG1036|consen 108 CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF------QRRESSLKYQ 179 (323)
T ss_pred eEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchh------hhccccceeE
Confidence 999999999999999998777766666778887766 46799999999999999999876432 2223334467
Q ss_pred eeEEEEecCCCCEEEEEECCCcEEEEeCC------ccceeeecccC-------CCCeEEEEEecCCCEEEEEeCCCcEEE
Q 005352 489 ITGFQFLPQDSSKVMVSCADSQVRILQGP------NVIGKYKGLRR-------SGNQLSACFTSDGKHIVSAGEDSNVYM 555 (701)
Q Consensus 489 i~~l~~~p~~~~~l~~~s~dg~I~iwd~~------~~~~~~~~~~~-------~~~v~~l~~s~dg~~l~sgs~Dg~I~i 555 (701)
+.++++.| ++.-+++++-||.|.+=... .....|+.|+. .-+|++++|+|-.+.|+||+.||.|.+
T Consensus 180 tR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~ 258 (323)
T KOG1036|consen 180 TRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI 258 (323)
T ss_pred EEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE
Confidence 89999999 78888999999999884433 22334444332 237899999999999999999999999
Q ss_pred EeCCCCC
Q 005352 556 WNCIGHE 562 (701)
Q Consensus 556 Wd~~~~~ 562 (701)
||+.+.+
T Consensus 259 Wd~~~rK 265 (323)
T KOG1036|consen 259 WDLFNRK 265 (323)
T ss_pred ccCcchh
Confidence 9998876
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.2e-23 Score=199.77 Aligned_cols=266 Identities=20% Similarity=0.263 Sum_probs=213.4
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeee
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE 287 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~ 287 (701)
++++..+.|++++.||.+++|+..... +.. .-.|..++.+++|.++ ..+++|+.||.|+.+|+.++.
T Consensus 20 ~f~~~~~~LLvssWDgslrlYdv~~~~--l~~------~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~---- 86 (323)
T KOG1036|consen 20 KFSPSSSDLLVSSWDGSLRLYDVPANS--LKL------KFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN---- 86 (323)
T ss_pred EEcCcCCcEEEEeccCcEEEEeccchh--hhh------heecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc----
Confidence 344556788999999999999987652 211 1238999999999874 578999999999999998864
Q ss_pred ecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-
Q 005352 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN- 366 (701)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~- 366 (701)
...+..|...|.||.+++..
T Consensus 87 -----------------------------------------------------------~~~igth~~~i~ci~~~~~~~ 107 (323)
T KOG1036|consen 87 -----------------------------------------------------------EDQIGTHDEGIRCIEYSYEVG 107 (323)
T ss_pred -----------------------------------------------------------ceeeccCCCceEEEEeeccCC
Confidence 12345699999999999865
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE---EecCCCcEEEEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD---WVDIRQIVTAVC 443 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~---~~~~~~~i~~i~ 443 (701)
.+++||.|++|++||.+...+...+.....|.|+.. .++.|+.|+.+..|.+||+++..... ....+..+.+|+
T Consensus 108 ~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~ 184 (323)
T KOG1036|consen 108 CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVA 184 (323)
T ss_pred eEEEcccCccEEEEeccccccccccccCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEE
Confidence 999999999999999999888888887889999987 56889999999999999999875443 334567799999
Q ss_pred EeeCCCeEEEEecCCcEEEEECCCCeeeeeeeE--Eeeccc---CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI--CVHSKK---KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 444 ~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~--~~~~~~---~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
+-|++..+++++-+|.|.+=.++........+. ..|... .....+|++++|+| -.+.|++|+.||.|.+||+.+
T Consensus 185 ~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 185 LVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred EecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCcc
Confidence 999999999999999998866665522222222 222221 12336899999999 588999999999999999998
Q ss_pred cceeeecccCCCCeEEEEEecCCCEEEEEeC
Q 005352 519 VIGKYKGLRRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 519 ~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
.+.....++....|.+++|+.+|..||+|+.
T Consensus 264 rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 264 RKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred hhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 7777777767788999999999999999973
No 92
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=3.4e-23 Score=225.04 Aligned_cols=207 Identities=14% Similarity=0.181 Sum_probs=157.3
Q ss_pred CeEEEcCCccCeEEEEEecC-C-eEEEEECCCcEEEEECCCCe--------eeeee-cCCCCeEEEEEeeCCCC-EEEEE
Q 005352 346 PLHEFHGHSGEILDLSWSKN-N-YLLSASIDKTVRLWRVGNDH--------CLRVF-PHSNYVTCVHFNPVDDN-YFISG 413 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~s~~-~-~l~s~s~dg~I~iWd~~~~~--------~~~~~-~h~~~V~~l~f~p~~~~-~l~sg 413 (701)
++..+.+|.+.|.+++|+|+ + +|++|+.|++|+|||+.++. ++..+ .|...|.+++|+| ++. +|+++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaSg 144 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCSS 144 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEEE
Confidence 45677899999999999997 4 99999999999999997642 22333 3889999999999 655 56789
Q ss_pred EcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCee---
Q 005352 414 SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT--- 490 (701)
Q Consensus 414 s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~--- 490 (701)
+.|++|+|||+++++.+....+...|.+++|+|+|..|++++.|+.|++||++++...... ..|...+.
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl--------~gH~g~~~s~~ 216 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF--------HIHDGGKNTKN 216 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE--------ecccCCceeEE
Confidence 9999999999999987766667788999999999999999999999999999987654321 12222222
Q ss_pred --EEEEecCCCCEEEEEECCC----cEEEEeCCccceee---ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 491 --GFQFLPQDSSKVMVSCADS----QVRILQGPNVIGKY---KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 491 --~l~~~p~~~~~l~~~s~dg----~I~iwd~~~~~~~~---~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
...|++ ++.+|++++.++ +|+|||+++..... ....+.+.+......++|.++++|+.|+.|++|++..+
T Consensus 217 v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 217 IWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 223446 677888877764 79999998533322 22223333333434556899999999999999999765
Q ss_pred C
Q 005352 562 E 562 (701)
Q Consensus 562 ~ 562 (701)
.
T Consensus 296 ~ 296 (568)
T PTZ00420 296 S 296 (568)
T ss_pred c
Confidence 4
No 93
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=5.8e-24 Score=225.06 Aligned_cols=394 Identities=15% Similarity=0.188 Sum_probs=290.8
Q ss_pred cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 214 ~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
+.++.|+..|.+++|+++.+.. ..+++++...|+++.=+|--..+|.|..+|+|.|+++..++.+.++
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~-------v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF----- 240 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKV-------VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF----- 240 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcE-------EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE-----
Confidence 3467799999999999865432 2467889999999999998889999999999999999988655444
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~ 371 (701)
+...+.|+.++|..|| .+++|
T Consensus 241 ---------------------------------------------------------k~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 241 ---------------------------------------------------------KQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred ---------------------------------------------------------EccccceeEEEeccCCCeeEEec
Confidence 3234899999999999 88888
Q ss_pred ECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC----cEE-EEecCCCcEEEEEE
Q 005352 372 SIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC----HVV-DWVDIRQIVTAVCY 444 (701)
Q Consensus 372 s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~----~~~-~~~~~~~~i~~i~~ 444 (701)
+..|.+.+||++..+.+.... |.+.|+.+.|.| ....+++++.|+.+++|=..++ +.+ ...+|..+..+|.|
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irf 342 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRF 342 (910)
T ss_pred cCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheee
Confidence 899999999999998887776 889999999999 8899999999999988855433 233 34578899999998
Q ss_pred e-eCCCeEEEEecCCcEEEEECCCCeee----e------------e----------e--------------eEE------
Q 005352 445 R-PDGQGGIVGSMMGDCRFYNVSDNHLE----L------------D----------A--------------EIC------ 477 (701)
Q Consensus 445 s-p~g~~l~~gs~dg~v~i~d~~~~~~~----~------------~----------~--------------~~~------ 477 (701)
. .+|..+.+++.|++++.|++....+. . . . .+.
T Consensus 343 y~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~ 422 (910)
T KOG1539|consen 343 YGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKR 422 (910)
T ss_pred eccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence 8 68889999999998888876421100 0 0 0 000
Q ss_pred ------eec-----------ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec---ccCCCCeEEEEE
Q 005352 478 ------VHS-----------KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG---LRRSGNQLSACF 537 (701)
Q Consensus 478 ------~~~-----------~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~---~~~~~~v~~l~~ 537 (701)
... ..+.....+++++.++ -|++.+.|...|.|-+|++......-.. ..|..+|+.++.
T Consensus 423 ~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~ 501 (910)
T KOG1539|consen 423 SAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAV 501 (910)
T ss_pred eEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEe
Confidence 000 0011224677888888 6899999999999999999877665544 459999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCCCCccccc-cccccccccCCceEEecCCCC--CCCC--CCCCCccccCCCCCCCc
Q 005352 538 TSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAK-TIRSLERFTTNASIAIPWCGL--KCGN--AEKEPQLHVSDDDSPEN 612 (701)
Q Consensus 538 s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~--~~~~--~~~~~~~~~~~~~~~~~ 612 (701)
...++.+++++.+|.+++|+++........... .+...-.......+++..... ...+ .++-......+...++.
T Consensus 502 D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 502 DGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD 581 (910)
T ss_pred cCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence 999999999999999999999887632111111 111111111122222222211 1111 11122222335667899
Q ss_pred cccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCC-CeEeE
Q 005352 613 LAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWD-GRIRS 691 (701)
Q Consensus 613 l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~D-G~Irv 691 (701)
++|||+ +.++++.+.|+++++||.-.+.++-.+... ..|.++.++++ |.+|+|+..| --|.+
T Consensus 582 ~~FS~D----grWlisasmD~tIr~wDlpt~~lID~~~vd------------~~~~sls~SPn-gD~LAT~Hvd~~gIyl 644 (910)
T KOG1539|consen 582 MTFSPD----GRWLISASMDSTIRTWDLPTGTLIDGLLVD------------SPCTSLSFSPN-GDFLATVHVDQNGIYL 644 (910)
T ss_pred eEeCCC----CcEEEEeecCCcEEEEeccCcceeeeEecC------------CcceeeEECCC-CCEEEEEEecCceEEE
Confidence 999998 899999999999999998888876655333 57888999999 9999999999 68999
Q ss_pred Eeec
Q 005352 692 FLNY 695 (701)
Q Consensus 692 w~~~ 695 (701)
|-|-
T Consensus 645 WsNk 648 (910)
T KOG1539|consen 645 WSNK 648 (910)
T ss_pred EEch
Confidence 9873
No 94
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.3e-25 Score=202.97 Aligned_cols=229 Identities=17% Similarity=0.308 Sum_probs=191.1
Q ss_pred ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 213 EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 213 ~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
++.+++++.||.+++||.....+ +.+.++.|+..|.++.|++ +++.+++++.|++|++|+..-.
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~s~------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--------- 137 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMPSK------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--------- 137 (311)
T ss_pred cceEEEEecCceEEEeccCCCCc------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC---------
Confidence 35667799999999999654433 3456788999999999998 4667888999999999997654
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLL 369 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~ 369 (701)
+.+++|.||...|...+|+|.. .++
T Consensus 138 -----------------------------------------------------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfa 164 (311)
T KOG0277|consen 138 -----------------------------------------------------NSVQTFNGHNSCIYQAAFSPHIPNLFA 164 (311)
T ss_pred -----------------------------------------------------cceEeecCCccEEEEEecCCCCCCeEE
Confidence 4567789999999999999975 999
Q ss_pred EEECCCcEEEEECCCC-eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE--EEEecCCCcEEEEEEee
Q 005352 370 SASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRP 446 (701)
Q Consensus 370 s~s~dg~I~iWd~~~~-~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~i~~i~~sp 446 (701)
++|.|+++++||++.. +.+....|...+.|+.|+..+.+.+++|+.|+.|++||+++-+. ..+.+|.-.|..+.|+|
T Consensus 165 s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP 244 (311)
T ss_pred EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence 9999999999999864 44444448899999999998999999999999999999997653 35678889999999999
Q ss_pred C-CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 447 D-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 447 ~-g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
. ...|++++.|-+++|||...+.-. ......|..-+.++.|++.++..++.++.|+.++||+.
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds~-------~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDSA-------IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred chhhHhhhccccceEEecccccchhh-------hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 5 467889999999999999855432 22234566778999999999999999999999999983
No 95
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.3e-23 Score=199.61 Aligned_cols=305 Identities=19% Similarity=0.287 Sum_probs=208.2
Q ss_pred ccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCee----eeeecCCCCCCceeEEeeccCCCcceeeeccc
Q 005352 241 YKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER----LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKE 316 (701)
Q Consensus 241 ~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (701)
.....|++|.+.|++|+|+.||++|||++.|++|+||++..-.. ......+...+..+.|.++-...+..+. ...
T Consensus 77 l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~-~g~ 155 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK-RGN 155 (420)
T ss_pred hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc-cCC
Confidence 33456889999999999999999999999999999999976321 1233445557777777776555444443 223
Q ss_pred cceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CC
Q 005352 317 KISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HS 394 (701)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~ 394 (701)
....+.............+ +....++.-..|.-.|..+-...++ +|++++.|.+|.+|++. |+.+..+. ..
T Consensus 156 ~l~vyk~~K~~dG~~~~~~------v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq 228 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHF------VHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ 228 (420)
T ss_pred EEEEEEeeecccCCCCccc------ccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence 3333333222211100000 0001111223466677777777667 99999999999999998 88887776 44
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC---CC------cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEEC
Q 005352 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVL---SC------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~---~~------~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~ 465 (701)
..-+..+.+| +++++++++.---|++|.+- .+ ++..+.+|...|+.++|+++...+++.+.||++++||+
T Consensus 229 ~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 229 SSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 4566788999 99999999999999999873 22 24467789999999999999999999999999999998
Q ss_pred CCCeeeeeeeEEeec---ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec-ccCCCCeEEEEEecCC
Q 005352 466 SDNHLELDAEICVHS---KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG-LRRSGNQLSACFTSDG 541 (701)
Q Consensus 466 ~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg 541 (701)
+-....-+....+.. ...........+.++| +++.|++ +....+++|..++....-.. ..|...|.+++|+++|
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g 385 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDG 385 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCC
Confidence 643211100000000 0111223334799999 5665554 45568899887653322211 2288999999999999
Q ss_pred CEEEEEeCCCcEEEEe
Q 005352 542 KHIVSAGEDSNVYMWN 557 (701)
Q Consensus 542 ~~l~sgs~Dg~I~iWd 557 (701)
++++|++ |..+++..
T Consensus 386 ~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 386 KYIATCG-DRYVRVIR 400 (420)
T ss_pred cEEeeec-ceeeeeec
Confidence 9999997 67888876
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.1e-24 Score=222.61 Aligned_cols=249 Identities=20% Similarity=0.382 Sum_probs=206.9
Q ss_pred CCCcEE---EEEEc-cCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 249 HDGSIL---TMKFS-PDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 249 H~~~I~---~l~fs-pdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
|...|. .+..+ |.++||+|||.||.|++|++.......
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~-------------------------------------- 61 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP-------------------------------------- 61 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc--------------------------------------
Confidence 444444 44444 467899999999999999986643100
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC--eeeeeec-CCCCeEEE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFP-HSNYVTCV 400 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~--~~~~~~~-h~~~V~~l 400 (701)
.......+..|.+.|.++....++ .|+++|.|-+|++|+...+ -|+.++. |.++|.|+
T Consensus 62 ------------------s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcl 123 (735)
T KOG0308|consen 62 ------------------STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCL 123 (735)
T ss_pred ------------------ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheee
Confidence 001245567899999999998888 9999999999999999887 5666666 99999999
Q ss_pred EE-eeCCCCEEEEEEcCCcEEEEeCCCCcE--E---------EEe-cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC
Q 005352 401 HF-NPVDDNYFISGSIDGKVRIWAVLSCHV--V---------DWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (701)
Q Consensus 401 ~f-~p~~~~~l~sgs~dg~v~iwd~~~~~~--~---------~~~-~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~ 467 (701)
++ .+ +..++|+|+.|+.|.+||+.++.. + ... ++...|.+++.++.|..|+.|+..+.+++||.++
T Consensus 124 a~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt 202 (735)
T KOG0308|consen 124 AYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT 202 (735)
T ss_pred eeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc
Confidence 99 55 888999999999999999997722 1 122 5678899999999999999999999999999998
Q ss_pred CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEE
Q 005352 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sg 547 (701)
.+.... ..+|...|..+..++ ++..+++++.||+|++||+...........|...|.++..+|+-.++++|
T Consensus 203 ~~kimk--------LrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG 273 (735)
T KOG0308|consen 203 CKKIMK--------LRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSG 273 (735)
T ss_pred ccceee--------eeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEec
Confidence 775432 236778899999998 89999999999999999999888877777799999999999999999999
Q ss_pred eCCCcEEEEeCCCCCC
Q 005352 548 GEDSNVYMWNCIGHEE 563 (701)
Q Consensus 548 s~Dg~I~iWd~~~~~~ 563 (701)
+.||.|+.=|+.+...
T Consensus 274 ~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 274 GRDGNIYRTDLRNPAK 289 (735)
T ss_pred CCCCcEEecccCCchh
Confidence 9999999999998643
No 97
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=4.5e-24 Score=212.62 Aligned_cols=254 Identities=19% Similarity=0.317 Sum_probs=204.4
Q ss_pred cCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 248 AHDGSILTMKFSPDG-QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 248 ~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
-|.+.|+.+.+.|.. .++||++..+.|.|||..+.........
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~------------------------------------ 165 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG------------------------------------ 165 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc------------------------------------
Confidence 399999999999965 5677888899999999876431111000
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCee-------eeeec-CCCC
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHC-------LRVFP-HSNY 396 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~-------~~~~~-h~~~ 396 (701)
.-.|-..+.||.+.-.+|+|++.. +|++++.|++|++||+..... ...+. |...
T Consensus 166 ----------------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~ 229 (422)
T KOG0264|consen 166 ----------------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDV 229 (422)
T ss_pred ----------------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcc
Confidence 015566789999988999999976 999999999999999975433 22233 9999
Q ss_pred eEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC--cEE-EEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeee
Q 005352 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSC--HVV-DWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLEL 472 (701)
Q Consensus 397 V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~--~~~-~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~ 472 (701)
|..++|+|.+..+|++++.|+.+.|||+++. +.. ....|...|++++|+| ++..||+|+.|++|++||+++....
T Consensus 230 VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~- 308 (422)
T KOG0264|consen 230 VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP- 308 (422)
T ss_pred eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC-
Confidence 9999999999999999999999999999953 222 4557889999999999 5667888999999999999986542
Q ss_pred eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc--------------eeeecccCCCCeEEEEEe
Q 005352 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI--------------GKYKGLRRSGNQLSACFT 538 (701)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~--------------~~~~~~~~~~~v~~l~~s 538 (701)
++ ....|...|..+.|+|.....|++++.|+.+.|||+.... ..|...+|...|..++|+
T Consensus 309 -----lh-~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn 382 (422)
T KOG0264|consen 309 -----LH-TFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN 382 (422)
T ss_pred -----ce-eccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCC
Confidence 22 2566788999999999999999999999999999986322 235555689999999999
Q ss_pred cCCC-EEEEEeCCCcEEEEeCCC
Q 005352 539 SDGK-HIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 539 ~dg~-~l~sgs~Dg~I~iWd~~~ 560 (701)
|+.. .|++.++|+.+.||.+..
T Consensus 383 p~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 383 PNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCCeEEEEecCCceEEEeeccc
Confidence 9886 457889999999999873
No 98
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.7e-24 Score=202.76 Aligned_cols=295 Identities=16% Similarity=0.240 Sum_probs=236.3
Q ss_pred CceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+++.||+..|+.++-......+.+++.|.+.+||.++++.+
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-------------------------------------- 182 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-------------------------------------- 182 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc--------------------------------------
Confidence 356788999999999988778999999999999999999854
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEEC------CC-----------
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRV------GN----------- 384 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~------~~----------- 384 (701)
+..+.||.+.|.+|+|++.+ ++++++.|++-.||.. ..
T Consensus 183 ------------------------L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 183 ------------------------LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred ------------------------eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 45568999999999999999 9999999999999972 11
Q ss_pred -------------------C----eeeeee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcE
Q 005352 385 -------------------D----HCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIV 439 (701)
Q Consensus 385 -------------------~----~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i 439 (701)
+ .++..+ .|...|.+..|.. .++.+++++.|.+..+||+.++.++. +.+|....
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~EL 317 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSEL 317 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhc
Confidence 0 012222 2888899999998 89999999999999999999999885 55788899
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
+.++-+|..+++++.+.|.+.++||++..- ........|...|++..|.. +..+++|+.|.+|++||++++
T Consensus 318 tHcstHptQrLVvTsSrDtTFRLWDFReaI-------~sV~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 318 THCSTHPTQRLVVTSSRDTTFRLWDFREAI-------QSVAVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred cccccCCcceEEEEeccCceeEeccchhhc-------ceeeeecccccceeEEEEec--CCceeecCCCceEEEeeeccc
Confidence 999999999999999999999999998432 12233566788999999987 578999999999999999998
Q ss_pred ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCC
Q 005352 520 IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKE 599 (701)
Q Consensus 520 ~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 599 (701)
...+...+...+++.++.+..+..|+.--.+..|++||++....+.. .++.
T Consensus 389 RsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl-----Prts------------------------ 439 (481)
T KOG0300|consen 389 RSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL-----PRTS------------------------ 439 (481)
T ss_pred cCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccC-----Cccc------------------------
Confidence 88887777889999999999988999999999999999988764221 0000
Q ss_pred CccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccC
Q 005352 600 PQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKL 643 (701)
Q Consensus 600 ~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~ 643 (701)
.+. +...+.+.+|..+. ....+++++.|+.+.-|.....
T Consensus 440 Rqg---HrRMV~c~AW~eeh--p~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 440 RQG---HRRMVTCCAWLEEH--PACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccc---cceeeeeeeccccC--cccccccccccceeeeeEeccc
Confidence 000 11123333443321 2467889999999999987654
No 99
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=227.06 Aligned_cols=280 Identities=19% Similarity=0.310 Sum_probs=227.2
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
|...|.+..|. ..++++++.|++|++|+..++..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i------------------------------------------- 241 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLI------------------------------------------- 241 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEE-------------------------------------------
Confidence 67788999998 558999999999999999877522
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCC
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVD 406 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~ 406 (701)
...+.||.+.|.++++..-+ +|++|+.|.++++||..+++|...+. |.+.|.++...
T Consensus 242 ------------------~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--- 300 (537)
T KOG0274|consen 242 ------------------LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--- 300 (537)
T ss_pred ------------------EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc---
Confidence 23378999999999998744 99999999999999999999999998 99999999874
Q ss_pred CCEEEEEEcCCcEEEEeCCCCcEEEEec-CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 407 DNYFISGSIDGKVRIWAVLSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
+.++++|+.|.+|++|++.+++.+.... |..+|.++.++ +.++++|+.|++|++||+.+.++... ...|
T Consensus 301 ~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s--------l~gH 370 (537)
T KOG0274|consen 301 PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS--------LSGH 370 (537)
T ss_pred CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeee--------ecCC
Confidence 4788899999999999999999998887 99999999998 78999999999999999997765432 3458
Q ss_pred CCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc-ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCC
Q 005352 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEP 564 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~ 564 (701)
...|.++.+.+ . ..+++|+.|+.|++||+.+. ........|..-+..+.+ .+++|++++.|+.|++||..+++..
T Consensus 371 ~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 371 TGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECL 446 (537)
T ss_pred cceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCcee
Confidence 89999998865 2 89999999999999999988 666666667777755544 6789999999999999999888732
Q ss_pred CccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCC
Q 005352 565 AHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLP 644 (701)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~ 644 (701)
.. ++.- ....+..+++. ...+++.+.++.+++|+.+.+.
T Consensus 447 ~~--------~~~~---------------------------~~~~v~~l~~~------~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 447 RT--------LEGR---------------------------HVGGVSALALG------KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred ee--------eccC---------------------------CcccEEEeecC------cceEEEEecCCeeEEEecccCc
Confidence 11 1000 11122222222 2456777899999999998888
Q ss_pred CCccc
Q 005352 645 ALSQL 649 (701)
Q Consensus 645 ~~~~~ 649 (701)
++..+
T Consensus 486 ~~~~l 490 (537)
T KOG0274|consen 486 LIRTL 490 (537)
T ss_pred hhhhh
Confidence 77665
No 100
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=1.4e-23 Score=217.99 Aligned_cols=392 Identities=17% Similarity=0.199 Sum_probs=266.9
Q ss_pred ccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCC---EEEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ---YLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 217 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~---~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
+.|+.+..|.++.-.. .......++.||.+.|.+|+|...+. +|||+|.|..||||.+.-+.......-...
T Consensus 163 a~Ggs~~~v~~~s~~~-----d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~ 237 (764)
T KOG1063|consen 163 ACGGSKFVVDLYSSSA-----DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDS 237 (764)
T ss_pred EecCcceEEEEeccCC-----cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccc
Confidence 3467777788875431 13334468899999999999987544 899999999999999865432111000000
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s 372 (701)
. ....+ ... +... ..-.+++ ..-..+.||.+.|.++.|+|.+ .|+++|
T Consensus 238 ~----t~~~~-------------~~~-f~~l-----------~~i~~~i--s~eall~GHeDWV~sv~W~p~~~~LLSAS 286 (764)
T KOG1063|consen 238 L----TTLSN-------------LPV-FMIL-----------EEIQYRI--SFEALLMGHEDWVYSVWWHPEGLDLLSAS 286 (764)
T ss_pred c----ccccC-------------Cce-eeee-----------eeEEEEE--ehhhhhcCcccceEEEEEccchhhheecc
Confidence 0 00000 000 0000 0000000 0112346999999999999999 999999
Q ss_pred CCCcEEEEECCCCe--eeeee--c----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc----EEEEecCCCcEE
Q 005352 373 IDKTVRLWRVGNDH--CLRVF--P----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVDIRQIVT 440 (701)
Q Consensus 373 ~dg~I~iWd~~~~~--~~~~~--~----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~----~~~~~~~~~~i~ 440 (701)
.|+++.+|...+.. -+... . .........|+| +++.+++-+.-|..++|...... .....+|-..|+
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~ 365 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVK 365 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccce
Confidence 99999999876552 22222 2 244578899999 99999999999999999843322 223457888999
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc--
Q 005352 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-- 518 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~-- 518 (701)
.++|+|.|.+|++.+.|.+-|+|---..+.. ..-......|...++|+++.+ ....+++|.....+|+|+...
T Consensus 366 dv~W~psGeflLsvs~DQTTRlFa~wg~q~~----wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~f 440 (764)
T KOG1063|consen 366 DVDWDPSGEFLLSVSLDQTTRLFARWGRQQE----WHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSF 440 (764)
T ss_pred eeeecCCCCEEEEeccccceeeecccccccc----eeeecccccccccceeeehcc-CCceeeecccceeeeeecCcHHH
Confidence 9999999999999999999999876533322 222234566788999999998 467788888888999997321
Q ss_pred --------------------------------------------------------------------------cceeee
Q 005352 519 --------------------------------------------------------------------------VIGKYK 524 (701)
Q Consensus 519 --------------------------------------------------------------------------~~~~~~ 524 (701)
.....+
T Consensus 441 v~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~K 520 (764)
T KOG1063|consen 441 VKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHK 520 (764)
T ss_pred HHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHH
Confidence 000112
Q ss_pred cccCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCC
Q 005352 525 GLRRSGNQLSACFTSDGKHIVSAGEDS-----NVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKE 599 (701)
Q Consensus 525 ~~~~~~~v~~l~~s~dg~~l~sgs~Dg-----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 599 (701)
..+|...|++++.+|+|++|||++... .|++|+..+-.+.
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~----------------------------------- 565 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV----------------------------------- 565 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh-----------------------------------
Confidence 345788899999999999999997543 4889987664421
Q ss_pred CccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccE
Q 005352 600 PQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLV 679 (701)
Q Consensus 600 ~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 679 (701)
+....+.-.++.++|||+ +..+.+.+.|+++.+|...+... ..+. -.-.+.|..-||...++++ ++.
T Consensus 566 -~~L~~HsLTVT~l~FSpd----g~~LLsvsRDRt~sl~~~~~~~~-~e~~------fa~~k~HtRIIWdcsW~pd-e~~ 632 (764)
T KOG1063|consen 566 -QELEGHSLTVTRLAFSPD----GRYLLSVSRDRTVSLYEVQEDIK-DEFR------FACLKAHTRIIWDCSWSPD-EKY 632 (764)
T ss_pred -heecccceEEEEEEECCC----CcEEEEeecCceEEeeeeecccc-hhhh------hccccccceEEEEcccCcc-cce
Confidence 111122335778999998 88899999999999998633221 1111 0012333567888889999 999
Q ss_pred EEEecCCCeEeEEeecCCC
Q 005352 680 IVTAGWDGRIRSFLNYGLP 698 (701)
Q Consensus 680 ivTgg~DG~Irvw~~~g~p 698 (701)
+|||+.|..+++|..-..|
T Consensus 633 FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLR 651 (764)
T ss_pred eEEecCCceEEEEeccCch
Confidence 9999999999999754443
No 101
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=1.6e-22 Score=202.87 Aligned_cols=376 Identities=16% Similarity=0.227 Sum_probs=261.5
Q ss_pred eeeecCccccccccccceEEEEEccCccchh-hhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKEL-SALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~ 285 (701)
..+.+.+..++.....+.+..|+..+..... ..++.. ..+.-|.||+|.++|+ ++||..+|.|.||+..+.+..
T Consensus 206 a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek----~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~ 280 (626)
T KOG2106|consen 206 ATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEK----REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRIS 280 (626)
T ss_pred EEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccc----ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEE
Confidence 4677888888887788999999876543211 112211 1236799999999995 689999999999998655322
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
+....|.+.|.+++...+
T Consensus 281 --------------------------------------------------------------k~~~aH~ggv~~L~~lr~ 298 (626)
T KOG2106|consen 281 --------------------------------------------------------------KQVHAHDGGVFSLCMLRD 298 (626)
T ss_pred --------------------------------------------------------------eEeeecCCceEEEEEecC
Confidence 122268888888888888
Q ss_pred CeEEEEECCCcEEEEEC-----------------------------------------CCCeeeeeecCCCCeEEEEEee
Q 005352 366 NYLLSASIDKTVRLWRV-----------------------------------------GNDHCLRVFPHSNYVTCVHFNP 404 (701)
Q Consensus 366 ~~l~s~s~dg~I~iWd~-----------------------------------------~~~~~~~~~~h~~~V~~l~f~p 404 (701)
|.|++|+.|..|..||- +++-.+..+.|......++.+|
T Consensus 299 GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp 378 (626)
T KOG2106|consen 299 GTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP 378 (626)
T ss_pred ccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC
Confidence 87777888888888873 1111222233777788899999
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 405 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
+.+.|++++.|+.+++|+ ..++.-......+..++.|+|.| .+++|+..|...+.|.++..+... +..
T Consensus 379 -s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~--------~~d 446 (626)
T KOG2106|consen 379 -SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI--------HTD 446 (626)
T ss_pred -ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE--------Eec
Confidence 889999999999999999 55566555667899999999999 999999999999999988554321 111
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc--cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL--RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
..+++.+.|+| ++.+|++|+.|+.|+||.+......+... -+..+|+.+.|++|+++|.+-+.|-.|..|....-
T Consensus 447 -~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~- 523 (626)
T KOG2106|consen 447 -NEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSEC- 523 (626)
T ss_pred -CCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccC-
Confidence 57899999999 89999999999999999887554444332 24489999999999999999999999999943222
Q ss_pred CCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCcc
Q 005352 563 EPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEK 642 (701)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~ 642 (701)
++....+.+++....+.+.+---|. .+...+..++.+.. ...++++-..+.++++.
T Consensus 524 ----~~~ts~kDvkW~t~~c~lGF~v~g~-------------s~~t~i~a~~rs~~----~~~lA~gdd~g~v~lf~--- 579 (626)
T KOG2106|consen 524 ----KQITSVKDVKWATYTCTLGFEVFGG-------------SDGTDINAVARSHC----EKLLASGDDFGKVHLFS--- 579 (626)
T ss_pred ----cccceecceeeeeeEEEEEEEEecc-------------cCCchHHHhhhhhh----hhhhhccccCceEEEEc---
Confidence 2223366666666666665443331 11222333333332 23334444455566543
Q ss_pred CCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 643 LPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
.|+.+.- + ....|.-+.+.+.+++|... ..++.|.|.|-.|-.|+.
T Consensus 580 yPc~s~r-A----~~he~~ghs~~vt~V~Fl~~-d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 580 YPCSSPR-A----PSHEYGGHSSHVTNVAFLCK-DSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cccCCCc-c----cceeeccccceeEEEEEeeC-CceEEecCCCceEEEEEe
Confidence 2322211 0 11133444667888899988 555556669999999974
No 102
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.9e-23 Score=209.52 Aligned_cols=228 Identities=21% Similarity=0.317 Sum_probs=191.2
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERL 285 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~ 285 (701)
.+++.++..+++|...|.|+|+|.+.+ ... +.+++|+.+|..+.|+|+ ++.|++|+.|+.+++||+.+..
T Consensus 74 ~~fR~DG~LlaaGD~sG~V~vfD~k~r--~iL-----R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-- 144 (487)
T KOG0310|consen 74 VDFRSDGRLLAAGDESGHVKVFDMKSR--VIL-----RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-- 144 (487)
T ss_pred EEeecCCeEEEccCCcCcEEEeccccH--HHH-----HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--
Confidence 456677888888999999999995431 111 347789999999999995 6678899999999999998753
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
....+.+|++.|.|.+|+|.
T Consensus 145 ------------------------------------------------------------v~~~l~~htDYVR~g~~~~~ 164 (487)
T KOG0310|consen 145 ------------------------------------------------------------VQAELSGHTDYVRCGDISPA 164 (487)
T ss_pred ------------------------------------------------------------EEEEecCCcceeEeeccccC
Confidence 13356899999999999997
Q ss_pred C--eEEEEECCCcEEEEECCCC-eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC-cEE-EEecCCCcEE
Q 005352 366 N--YLLSASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVV-DWVDIRQIVT 440 (701)
Q Consensus 366 ~--~l~s~s~dg~I~iWd~~~~-~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~-~~~-~~~~~~~~i~ 440 (701)
+ .++|||.||+|++||++.. ..+..+.|..+|..+.+-| .+..|++++ ...|++||+.++ +.+ ....|...|+
T Consensus 165 ~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVT 242 (487)
T KOG0310|consen 165 NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVT 242 (487)
T ss_pred CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEE
Confidence 6 8999999999999999987 7888899999999999999 889999987 568999999955 444 3445999999
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
|+++..+++.|++|+-|+.+++||+.+.+...... ..++|.+++.+| +++.+++|..+|.+.+-+
T Consensus 243 cL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~---------~~~pvLsiavs~-dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 243 CLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK---------YPGPVLSIAVSP-DDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred EEEeecCCceEeecccccceEEEEccceEEEEeee---------cccceeeEEecC-CCceEEEecccceeeeeh
Confidence 99999999999999999999999987766543222 237899999999 789999999999988874
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.3e-23 Score=207.28 Aligned_cols=328 Identities=18% Similarity=0.239 Sum_probs=241.1
Q ss_pred HHHhhccchhhHHHHHHhHHhhhccceeeecccCcceeeecCcccccc------ccccceEEEEEccCccchhhhcccCc
Q 005352 171 IVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMF------CSKVQRVKVYHCKKRSKELSALYKGQ 244 (701)
Q Consensus 171 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~d~~v~vw~~~~~~~~~~~~~~~~ 244 (701)
.....+++.+|++|+++.|+.+++...- ....+-.+.++.++. .-..|+++-.-..+-. .......+
T Consensus 64 ~e~~~Eta~ekr~RlA~e~L~~i~e~~E-----~~~d~~~~~~e~va~rLked~le~~Gr~~r~~a~~v~--~~~s~~~~ 136 (479)
T KOG0299|consen 64 DEFEEETAGEKRLRLAEEYLDEIREIEE-----DNFDADDLDDELVASRLKEDVLEQSGRVRRLVADKVQ--APESSDFR 136 (479)
T ss_pred ccchhcchhHHHHHHHHHHHHHHHhhhh-----cccccchhhHHHHHHHHHHHHHHhcceeehhhhhhcc--ccccccce
Confidence 3445678889999999999999962111 001111111111111 1122333332222111 11111135
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.+..|.-+|.+|+++|++.+.++++.||+|.-|++.+++...-+-... .+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--------------ev---------------- 186 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD--------------EV---------------- 186 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc--------------hh----------------
Confidence 677899999999999999999999999999999999886432111000 00
Q ss_pred eecCCccEEEcCCccccccCCCeEEE-cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEF-HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
......+...- .+|...|.+++.++++ +|++|+.|..|.||+.++.+.++.+. |.+.|.+++
T Consensus 187 ---------------~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~ 251 (479)
T KOG0299|consen 187 ---------------LKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLA 251 (479)
T ss_pred ---------------hhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeee
Confidence 00000111111 4899999999999999 99999999999999999999999987 999999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
|-. ..+.+++++.|++|++|++.....+ ..++|+..|..|....-++.+-+|+.|.++++|++......
T Consensus 252 fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql--------- 321 (479)
T KOG0299|consen 252 FRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL--------- 321 (479)
T ss_pred eec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee---------
Confidence 997 7788999999999999999877666 67899999999999888888889999999999999654322
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc------------cCCCCeEEEEEecCCCEEEEEe
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL------------RRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~------------~~~~~v~~l~~s~dg~~l~sgs 548 (701)
....+...+.|++|.. ..++++|+.+|.|.+|++.+....|... .+...|++++..|...++++|+
T Consensus 322 ifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS 399 (479)
T KOG0299|consen 322 IFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS 399 (479)
T ss_pred eeeCCCCCeeeEEEec--ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC
Confidence 1334567899999986 6899999999999999987655544321 1223799999999999999999
Q ss_pred CCCcEEEEeCCCCC
Q 005352 549 EDSNVYMWNCIGHE 562 (701)
Q Consensus 549 ~Dg~I~iWd~~~~~ 562 (701)
.+|.|++|.+..+-
T Consensus 400 ~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 400 WSGCVRLWKIEDGL 413 (479)
T ss_pred CCCceEEEEecCCc
Confidence 99999999998874
No 104
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.3e-23 Score=224.20 Aligned_cols=245 Identities=20% Similarity=0.291 Sum_probs=193.8
Q ss_pred cccCcc--eeeecCccccccccccceEEEEEccCc----------------------------cc--------------h
Q 005352 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKR----------------------------SK--------------E 236 (701)
Q Consensus 201 ~~~~~~--~~~~~~~~~~~~~~~d~~v~vw~~~~~----------------------------~~--------------~ 236 (701)
.|++.+ ..|+.++.++|+|+.|+.|+||.+... .. +
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 455555 567888999999999999999998540 00 0
Q ss_pred hhh-----------cccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccC
Q 005352 237 LSA-----------LYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305 (701)
Q Consensus 237 ~~~-----------~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (701)
... -.+.+++.||.+.|..|.||.++ +|+|++.|.+||+|++...+++..|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F----------------- 406 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF----------------- 406 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-----------------
Confidence 000 01234678999999999999875 9999999999999999877655433
Q ss_pred CCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECC
Q 005352 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVG 383 (701)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~ 383 (701)
.|.+-|+|++|+|-+ ||++|+-|+.||||++.
T Consensus 407 ----------------------------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 407 ----------------------------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred ----------------------------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence 399999999999965 99999999999999999
Q ss_pred CCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---C------CCcEEEEEEeeC-CCeEEE
Q 005352 384 NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---I------RQIVTAVCYRPD-GQGGIV 453 (701)
Q Consensus 384 ~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---~------~~~i~~i~~sp~-g~~l~~ 453 (701)
..+.+.-.....-|++++|.| +|++.+.|+.+|.+++|++...+...... + ...|+.+.|.|. ...+++
T Consensus 441 d~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 441 DKKVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred cCeeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 998887777779999999999 99999999999999999998877653221 1 236999999984 346999
Q ss_pred EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 454 GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 454 gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
.+.|..|+|||.++..+....+- ......-....|.. ++++|++++.|..|+||+..
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG------~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKG------FRNTSSQISASFSS-DGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcc------cccCCcceeeeEcc-CCCEEEEeecCceEEEEeCC
Confidence 99999999999987665432211 11122334567888 89999999999999999975
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=7.8e-24 Score=211.76 Aligned_cols=282 Identities=17% Similarity=0.265 Sum_probs=225.2
Q ss_pred cCcceeeecCc-cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec
Q 005352 203 QGEGERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281 (701)
Q Consensus 203 ~~~~~~~~~~~-~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 281 (701)
..-++++..+. ...+..+..|-|||||+........... -....-..-|.+++..|||+.|++||+-.++.|||+..
T Consensus 419 GEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~Pvsq--Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQ--LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred CcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCcccc--ccccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence 33344444332 3445555678899999965432211110 01223467899999999999999999999999999977
Q ss_pred CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE
Q 005352 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (701)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 361 (701)
....- ...+..-.....+++
T Consensus 497 pTpri------------------------------------------------------------kaeltssapaCyALa 516 (705)
T KOG0639|consen 497 PTPRI------------------------------------------------------------KAELTSSAPACYALA 516 (705)
T ss_pred CCcch------------------------------------------------------------hhhcCCcchhhhhhh
Confidence 53211 011222234567889
Q ss_pred EecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcE
Q 005352 362 WSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV 439 (701)
Q Consensus 362 ~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i 439 (701)
.+||. ..+++..||.|.|||+.+...++.|+ |.+.+.||.+++ ++..|.+|+.|++||.||++.++.+...+....|
T Consensus 517 ~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 517 ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred cCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhh
Confidence 99998 88899999999999999999999998 999999999999 9999999999999999999999988888888999
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
.++.++|++.++++|-.++.+.+......+... ...|..-|.++.|.+ -++++++.+.|+.+..|...-.
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~skp~kyq---------lhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ---------LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCCcccee---------ecccccEEEEEEecc-cCceeeecCchhhhhhccCccc
Confidence 999999999999999999999998877543221 233557799999999 7999999999999999998877
Q ss_pred ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 520 IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 520 ~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
...|... ...+|.++.++.|.+||+||+.|....+|.+
T Consensus 666 asiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 666 ASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 7777764 5688999999999999999999999888875
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9.4e-24 Score=193.73 Aligned_cols=249 Identities=21% Similarity=0.327 Sum_probs=200.4
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
..|+..|..+...-.|+.||||+.|++|+|+.+..+...
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s----------------------------------------- 46 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS----------------------------------------- 46 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc-----------------------------------------
Confidence 469999999988888999999999999999999876411
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec--CC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEE
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK--NN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCV 400 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~--~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l 400 (701)
+++.++.||.++|..++|.. -| +|++++.||.|.||.-.+++-.+... |...|+++
T Consensus 47 ------------------~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV 108 (299)
T KOG1332|consen 47 ------------------KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSV 108 (299)
T ss_pred ------------------eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceee
Confidence 45678899999999999976 45 99999999999999988885444433 89999999
Q ss_pred EEeeCC-CCEEEEEEcCCcEEEEeCCCC-c---EEEEecCCCcEEEEEEeeC---C-----------CeEEEEecCCcEE
Q 005352 401 HFNPVD-DNYFISGSIDGKVRIWAVLSC-H---VVDWVDIRQIVTAVCYRPD---G-----------QGGIVGSMMGDCR 461 (701)
Q Consensus 401 ~f~p~~-~~~l~sgs~dg~v~iwd~~~~-~---~~~~~~~~~~i~~i~~sp~---g-----------~~l~~gs~dg~v~ 461 (701)
+|.|.. +-.|++++.||.|.|.+.+.. . ......|.-.+++++|.|. | +.|++|+.|..|+
T Consensus 109 ~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vk 188 (299)
T KOG1332|consen 109 AWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVK 188 (299)
T ss_pred cccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcccee
Confidence 999933 456889999999999988765 2 1234567888999999995 4 5699999999999
Q ss_pred EEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC---CCEEEEEECCCcEEEEeCCccceeee---cccCCCCeEEE
Q 005352 462 FYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD---SSKVMVSCADSQVRILQGPNVIGKYK---GLRRSGNQLSA 535 (701)
Q Consensus 462 i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~---~~~l~~~s~dg~I~iwd~~~~~~~~~---~~~~~~~v~~l 535 (701)
||+........+. ....|...+..++|+|.. ...|++++.||+|.||.........+ .......+..+
T Consensus 189 iW~~~~~~w~~e~------~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~v 262 (299)
T KOG1332|consen 189 IWKFDSDSWKLER------TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRV 262 (299)
T ss_pred eeecCCcchhhhh------hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEE
Confidence 9999987543322 245677889999999954 35899999999999998763222211 12245679999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 536 CFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 536 ~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
+||..|+.|+.++.|+.|.+|.-+.
T Consensus 263 SWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 263 SWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEeccccEEEEecCCcEEEEEEeCC
Confidence 9999999999999999999997543
No 107
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.8e-24 Score=224.12 Aligned_cols=299 Identities=16% Similarity=0.223 Sum_probs=224.8
Q ss_pred cccCcceeeecCccc-cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRLNEED-AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~~~~~-~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd 278 (701)
+.+..+++++.+.+. -+........+||..........-......-+.-.-.+..++|.. +.++|||++..|.|.+||
T Consensus 37 ~~k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 37 KLKAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred ecccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence 344555666655442 233444566788877554433221111000011112455677864 467999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.... .++.+..|..|...|.
T Consensus 117 lnk~~-----------------------------------------------------------rnk~l~~f~EH~Rs~~ 137 (839)
T KOG0269|consen 117 LNKSI-----------------------------------------------------------RNKLLTVFNEHERSAN 137 (839)
T ss_pred cCccc-----------------------------------------------------------cchhhhHhhhhcccee
Confidence 96521 0145667788999999
Q ss_pred EEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--EEe
Q 005352 359 DLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWV 433 (701)
Q Consensus 359 ~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~ 433 (701)
++.|++.. +|++||.||+|++||++..+...++. ....|..++|+|..+++|+++...|.+++||++..... ++.
T Consensus 138 ~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~ 217 (839)
T KOG0269|consen 138 KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT 217 (839)
T ss_pred eeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh
Confidence 99999976 99999999999999999988887776 66789999999988999999999999999999976533 677
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC--CCcE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA--DSQV 511 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~--dg~I 511 (701)
.|.++|.++.|+|++.+||+|+.|+.|+|||+.+........+ ....++..+.|-|....+|++++. |-.|
T Consensus 218 AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-------nTiapv~rVkWRP~~~~hLAtcsmv~dtsV 290 (839)
T KOG0269|consen 218 AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-------NTIAPVGRVKWRPARSYHLATCSMVVDTSV 290 (839)
T ss_pred cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-------eecceeeeeeeccCccchhhhhhccccceE
Confidence 8999999999999999999999999999999987654322211 123678999999987778888775 8899
Q ss_pred EEEeCCcccee-eecccCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCCCCC
Q 005352 512 RILQGPNVIGK-YKGLRRSGNQLSACFTS-DGKHIVSAGEDSNVYMWNCIGHEEPA 565 (701)
Q Consensus 512 ~iwd~~~~~~~-~~~~~~~~~v~~l~~s~-dg~~l~sgs~Dg~I~iWd~~~~~~~~ 565 (701)
+|||++...-. .....|...++.++|.. |-..|.+++.||.|..-.+++...+.
T Consensus 291 ~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~pi 346 (839)
T KOG0269|consen 291 HVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTPI 346 (839)
T ss_pred EEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccChh
Confidence 99999854433 34455899999999965 45678999999999888777765443
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.6e-24 Score=220.13 Aligned_cols=280 Identities=16% Similarity=0.258 Sum_probs=227.6
Q ss_pred cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecC
Q 005352 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (701)
Q Consensus 211 ~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~ 290 (701)
+++.++.+|++|+.|++|+......++...+ ...++.|...|..|....+|+.|++++.|-+|++|+...+..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~-~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~------ 107 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPY-IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT------ 107 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccch-hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc------
Confidence 3455689999999999999876554433332 346788999999999999999999999999999999876520
Q ss_pred CCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEE-ecCC-eE
Q 005352 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW-SKNN-YL 368 (701)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~-s~~~-~l 368 (701)
-.+.++..|++-|.|+++ .++. .+
T Consensus 108 ------------------------------------------------------~c~stir~H~DYVkcla~~ak~~~lv 133 (735)
T KOG0308|consen 108 ------------------------------------------------------FCMSTIRTHKDYVKCLAYIAKNNELV 133 (735)
T ss_pred ------------------------------------------------------hhHhhhhcccchheeeeecccCceeE
Confidence 123455679999999999 6666 99
Q ss_pred EEEECCCcEEEEECCCC--eeeeee----------cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc-EEEEecC
Q 005352 369 LSASIDKTVRLWRVGND--HCLRVF----------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVDWVDI 435 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~--~~~~~~----------~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-~~~~~~~ 435 (701)
++|+-|+.|.+||++++ +.+..+ .+...|++++.++ ++..|++|+..+.+++||.++++ ++++.+|
T Consensus 134 aSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGH 212 (735)
T KOG0308|consen 134 ASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH 212 (735)
T ss_pred EecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeecc
Confidence 99999999999999987 333333 2677899999999 88999999999999999999886 4578899
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...|..+..++||+.+++++.||+|++||+...++... ...|...+.+++.+| +-.++++|+.|+.|..=|
T Consensus 213 TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T--------~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 213 TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT--------YIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee--------EEeccCceEEEeeCC-CcceEEecCCCCcEEecc
Confidence 99999999999999999999999999999988776544 223446699999998 789999999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
+++............+|..+..+...+-+-+++.|+.|+-|...-.
T Consensus 284 l~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 284 LRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred cCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 9875444444446677888877765555677788999999986543
No 109
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1e-22 Score=211.66 Aligned_cols=323 Identities=18% Similarity=0.254 Sum_probs=221.3
Q ss_pred cccccccccceEEEEEccCccch--------------hhhcccC----------ceeccCCCcEEEEEEccCCCEEEEEe
Q 005352 214 EDAMFCSKVQRVKVYHCKKRSKE--------------LSALYKG----------QEIQAHDGSILTMKFSPDGQYLASAG 269 (701)
Q Consensus 214 ~~~~~~~~d~~v~vw~~~~~~~~--------------~~~~~~~----------~~l~~H~~~I~~l~fspdg~~Lasgs 269 (701)
-.+++++.|..||||.+.....+ ....... ..+.||++.|.++.|+|.+..|++++
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS 286 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS 286 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence 35677999999999997432200 0000011 13459999999999999999999999
Q ss_pred CCCcEEEEEeecCee--eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcC---CccccccC
Q 005352 270 DDGVVRLWQVVEDER--LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFP---PKVFRILE 344 (701)
Q Consensus 270 ~Dg~I~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 344 (701)
.|.++.+|...+..- +....+.+... .........+.+....++...+ .+..-.+. ...|
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg--------~a~GF~g~lw~~n~~~ii~~g~---~Gg~hlWkt~d~~~w---- 351 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGG--------SAGGFWGGLWSPNSNVIIAHGR---TGGFHLWKTKDKTFW---- 351 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeecccc--------cccceeeEEEcCCCCEEEEecc---cCcEEEEeccCccce----
Confidence 999999998766522 22222211110 0001111122222211111111 11111111 1111
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECC-CCeeeeeec----CCCCeEEEEEeeCCCCEEEEEEcCCc
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG-NDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGK 418 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~-~~~~~~~~~----h~~~V~~l~f~p~~~~~l~sgs~dg~ 418 (701)
.+...+.||.+.|++++|.|.| +|++.|.|.+-|++-.- ....-..+. |....+|++|-+ ....|++|.....
T Consensus 352 ~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 352 TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKV 430 (764)
T ss_pred eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeeccccee
Confidence 2344568999999999999999 99999999999998654 222222332 888999999987 5788999998899
Q ss_pred EEEEeCCC-------------------------------------------C----------------------------
Q 005352 419 VRIWAVLS-------------------------------------------C---------------------------- 427 (701)
Q Consensus 419 v~iwd~~~-------------------------------------------~---------------------------- 427 (701)
+|+|+... +
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 99996521 0
Q ss_pred ------cEEEEecCCCcEEEEEEeeCCCeEEEEecCC-----cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 428 ------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG-----DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 428 ------~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
++.++++|...|++++.+|+++.+++++... .|++|+..+..... ....|...|+.++|+|
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~--------~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ--------ELEGHSLTVTRLAFSP 582 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh--------eecccceEEEEEEECC
Confidence 0112445677799999999999999987644 38899987654322 2445668899999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCccc-eeee---cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVI-GKYK---GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~-~~~~---~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
++.+|++.+.|.++.+|...+.. ..+. ...|..-|.+++|+|++.+++|+|.|.+|++|.....
T Consensus 583 -dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 583 -DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred -CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 89999999999999999875322 1111 3458889999999999999999999999999998776
No 110
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.5e-22 Score=179.21 Aligned_cols=263 Identities=17% Similarity=0.163 Sum_probs=198.4
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeec-CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD-IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
....|.+++|+|.|.+.|.|+...+++|-.......+..-. ....++.
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~------------------------------- 79 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPS------------------------------- 79 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCe-------------------------------
Confidence 56679999999999999999999999998764432111100 0000000
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeee-----ec-CCCCeEEE
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRV-----FP-HSNYVTCV 400 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~-----~~-h~~~V~~l 400 (701)
.....-+.|++.|.|.+|+|.| ++++|+.|++|++.-.+...+..+ |. |.+.|..+
T Consensus 80 -----------------v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl 142 (350)
T KOG0641|consen 80 -----------------VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDL 142 (350)
T ss_pred -----------------EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeee
Confidence 0112335689999999999999 999999999999987765544322 33 89999999
Q ss_pred EEee---CCCCEEEEEE-cCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeee
Q 005352 401 HFNP---VDDNYFISGS-IDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (701)
Q Consensus 401 ~f~p---~~~~~l~sgs-~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~ 475 (701)
+|.. ..+.+|++++ .|..|++-|...++.. ...+|.+.|.++ |+-+|-.+++|+.|.+|++||++-+.......
T Consensus 143 ~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~ 221 (350)
T KOG0641|consen 143 AFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD 221 (350)
T ss_pred EEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeecc
Confidence 9974 1245666654 4677888888888766 456788888776 44578899999999999999998765543221
Q ss_pred EEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 005352 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYM 555 (701)
Q Consensus 476 ~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i 555 (701)
...+. .......|..++..| .+.+|++|-.|....+||++........+.|...|.++.|+|...|+++++.|..|++
T Consensus 222 ~~~~~-~glessavaav~vdp-sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 222 NDFHD-GGLESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred CcccC-CCcccceeEEEEECC-CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEE
Confidence 11111 112336789999999 7999999999999999999987777777789999999999999999999999999999
Q ss_pred EeCCCCC
Q 005352 556 WNCIGHE 562 (701)
Q Consensus 556 Wd~~~~~ 562 (701)
-|+...-
T Consensus 300 tdlqgdl 306 (350)
T KOG0641|consen 300 TDLQGDL 306 (350)
T ss_pred eecccch
Confidence 9988754
No 111
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.6e-21 Score=195.72 Aligned_cols=312 Identities=21% Similarity=0.303 Sum_probs=231.8
Q ss_pred ceeeecCc-cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCee
Q 005352 206 GERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (701)
Q Consensus 206 ~~~~~~~~-~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~ 284 (701)
+.++.+.+ +..++|..+|.|.||+.... +..+...+|.+.|.+++...+|.+| +|+.|..|..|| ..-+.
T Consensus 249 Vl~v~F~engdviTgDS~G~i~Iw~~~~~-------~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd-~~y~k 319 (626)
T KOG2106|consen 249 VLCVTFLENGDVITGDSGGNILIWSKGTN-------RISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWD-DNYRK 319 (626)
T ss_pred EEEEEEcCCCCEEeecCCceEEEEeCCCc-------eEEeEeeecCCceEEEEEecCccEe-ecCccceEEecc-ccccc
Confidence 45666655 46778999999999975321 1122344899999999999999654 599999999999 55556
Q ss_pred eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
+++.++++..........+... +........++.. .+.........+|......++.+|
T Consensus 320 ~r~~elPe~~G~iRtv~e~~~d----i~vGTtrN~iL~G-----------------t~~~~f~~~v~gh~delwgla~hp 378 (626)
T KOG2106|consen 320 LRETELPEQFGPIRTVAEGKGD----ILVGTTRNFILQG-----------------TLENGFTLTVQGHGDELWGLATHP 378 (626)
T ss_pred cccccCchhcCCeeEEecCCCc----EEEeeccceEEEe-----------------eecCCceEEEEecccceeeEEcCC
Confidence 6666666544333333333222 1111010000000 111233456678999999999999
Q ss_pred CC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEE
Q 005352 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVC 443 (701)
Q Consensus 365 ~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~ 443 (701)
+. +++|++.|+.+++|+ ..+.+.......++.|+.|+| .+ .++.|...|...+.|+.+...+.......+++++.
T Consensus 379 s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ 454 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVR 454 (626)
T ss_pred ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEecCCceEEEE
Confidence 98 999999999999999 667777777789999999999 77 99999999999999999988887776799999999
Q ss_pred EeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc-----
Q 005352 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN----- 518 (701)
Q Consensus 444 ~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~----- 518 (701)
|+|+|.+||+|+.|+.|++|-+..+...+...- +.+..+|+.+.|++ +++++.+-+.|-.|..|....
T Consensus 455 ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~------k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~~~~~~t 527 (626)
T KOG2106|consen 455 YSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG------KCSGSPITHLDWSS-DSQFLVSNSGDYEILYWKPSECKQIT 527 (626)
T ss_pred EcCCCCEEEEecCCCeEEEEEECCCCcEEEEee------eecCceeEEeeecC-CCceEEeccCceEEEEEccccCcccc
Confidence 999999999999999999999988766543221 22227899999999 789999999999999985210
Q ss_pred ----------------------------------------------cceee------------ecccCCCCeEEEEEecC
Q 005352 519 ----------------------------------------------VIGKY------------KGLRRSGNQLSACFTSD 540 (701)
Q Consensus 519 ----------------------------------------------~~~~~------------~~~~~~~~v~~l~~s~d 540 (701)
....| +...|.+.|++++|..+
T Consensus 528 s~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~ 607 (626)
T KOG2106|consen 528 SVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCK 607 (626)
T ss_pred eecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeC
Confidence 00011 11237788999999998
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 005352 541 GKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 541 g~~l~sgs~Dg~I~iWd~ 558 (701)
..+|++.+.|..|..|++
T Consensus 608 d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 608 DSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CceEEecCCCceEEEEEe
Confidence 888888889999999986
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=199.35 Aligned_cols=238 Identities=19% Similarity=0.264 Sum_probs=201.2
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
...|.++...|....++|||.|..+.++|...++
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q---------------------------------------------- 252 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ---------------------------------------------- 252 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhh----------------------------------------------
Confidence 4568888888887889999999999999987764
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCC
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDD 407 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~ 407 (701)
.+..|.||...|+.+.++|+. .+++++.|..|+||......+..... |..+|+.+..+| ++
T Consensus 253 ----------------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tg 315 (506)
T KOG0289|consen 253 ----------------ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TG 315 (506)
T ss_pred ----------------hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc-CC
Confidence 455678999999999999998 99999999999999987766555444 999999999999 99
Q ss_pred CEEEEEEcCCcEEEEeCCCCcEEEEecCC---CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 408 NYFISGSIDGKVRIWAVLSCHVVDWVDIR---QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 408 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~---~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
.||++++.|++..+.|++++..+....+. -.+++.+|+|||..|.+|+.||.++|||+...... .....
T Consensus 316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~--------a~Fpg 387 (506)
T KOG0289|consen 316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV--------AKFPG 387 (506)
T ss_pred cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc--------ccCCC
Confidence 99999999999999999999888665553 35999999999999999999999999999876522 23455
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce--eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG--KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
|..+|..++|+. +|.+|++++.|+.|++||+++... .+... ....+.+++|.+.|.||+.++.|=.|++++-.+
T Consensus 388 ht~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 388 HTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred CCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeecc-ccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 889999999999 899999999999999999986542 23322 233799999999999999998887777776433
No 113
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1e-22 Score=211.50 Aligned_cols=371 Identities=12% Similarity=0.111 Sum_probs=263.5
Q ss_pred cceeeecCccccccccccceEEEEEccCccchhhhccc--------------C-cee----ccCCCcEEEEEEccCCCEE
Q 005352 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYK--------------G-QEI----QAHDGSILTMKFSPDGQYL 265 (701)
Q Consensus 205 ~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~--------------~-~~l----~~H~~~I~~l~fspdg~~L 265 (701)
..+++..+...++.|..++.|++++-.... +..... . ... ++---...++.|++....|
T Consensus 262 nAnCIcVs~r~I~cgCa~g~vrlFnp~tL~--y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~kl 339 (1080)
T KOG1408|consen 262 NANCICVSSRLIACGCAKGMVRLFNPETLD--YAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKL 339 (1080)
T ss_pred ccceeeeecceEEEeeccceeeecCcchhh--hccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceE
Confidence 456778888889999999999999753211 111000 0 000 1111234578899999999
Q ss_pred EEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCC
Q 005352 266 ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345 (701)
Q Consensus 266 asgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (701)
...-.|..+.|||+..-.++...
T Consensus 340 scVYndhSlYvWDvrD~~kvgk~--------------------------------------------------------- 362 (1080)
T KOG1408|consen 340 SCVYNDHSLYVWDVRDVNKVGKC--------------------------------------------------------- 362 (1080)
T ss_pred EEEEcCceEEEEeccccccccce---------------------------------------------------------
Confidence 99999999999999876533211
Q ss_pred CeEEEcCCccCeEEEEE------------ecCCeEEEEECCCcEEEEECCCCeeeee-----------------------
Q 005352 346 PLHEFHGHSGEILDLSW------------SKNNYLLSASIDKTVRLWRVGNDHCLRV----------------------- 390 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~------------s~~~~l~s~s~dg~I~iWd~~~~~~~~~----------------------- 390 (701)
+.+..|...|+++.- -|.+.|+|++.|++|++||+.....-.+
T Consensus 363 --~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~ 440 (1080)
T KOG1408|consen 363 --SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM 440 (1080)
T ss_pred --eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence 111123333333322 2455799999999999999865211000
Q ss_pred ---------------ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEee---CCCeE
Q 005352 391 ---------------FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRP---DGQGG 451 (701)
Q Consensus 391 ---------------~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp---~g~~l 451 (701)
+.....+.+++++| ++++|++|..-|.++||++..-+.. ....|...|.++.|+- ..++|
T Consensus 441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLL 519 (1080)
T KOG1408|consen 441 HDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLL 519 (1080)
T ss_pred hhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhh
Confidence 01344689999999 9999999999999999999887655 5667899999999985 45789
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC-CEEEEEECCCcEEEEeCCc--cceeeeccc-
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS-SKVMVSCADSQVRILQGPN--VIGKYKGLR- 527 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~-~~l~~~s~dg~I~iwd~~~--~~~~~~~~~- 527 (701)
++++.|.-|++||+..+.. +......|...|+++.|.-.+. ..+++++.|..|.+--..+ ....|..+.
T Consensus 520 ASasrdRlIHV~Dv~rny~-------l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~ 592 (1080)
T KOG1408|consen 520 ASASRDRLIHVYDVKRNYD-------LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQ 592 (1080)
T ss_pred hhccCCceEEEEecccccc-------hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccc
Confidence 9999999999999976543 2333556778999999987443 5677888888876543221 122222221
Q ss_pred --CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccC
Q 005352 528 --RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVS 605 (701)
Q Consensus 528 --~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 605 (701)
....++.++..|..+++++++.|..|+||++.+++.... .+ ....
T Consensus 593 t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~-----FK----------------------------gs~~ 639 (1080)
T KOG1408|consen 593 TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS-----FK----------------------------GSRD 639 (1080)
T ss_pred ccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee-----ec----------------------------cccc
Confidence 346789999999999999999999999999999984221 11 1111
Q ss_pred CCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecC
Q 005352 606 DDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGW 685 (701)
Q Consensus 606 ~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~ 685 (701)
+....-.+...|. +-++++...|+++.+++.-..+++.++.+| ...|..+-|.+| =+.|++++-
T Consensus 640 ~eG~lIKv~lDPS----giY~atScsdktl~~~Df~sgEcvA~m~GH-----------sE~VTG~kF~nD-CkHlISvsg 703 (1080)
T KOG1408|consen 640 HEGDLIKVILDPS----GIYLATSCSDKTLCFVDFVSGECVAQMTGH-----------SEAVTGVKFLND-CKHLISVSG 703 (1080)
T ss_pred CCCceEEEEECCC----ccEEEEeecCCceEEEEeccchhhhhhcCc-----------chheeeeeeccc-chhheeecC
Confidence 1223334455775 677788889999999999999999999888 346778888888 778889999
Q ss_pred CCeEeEEe
Q 005352 686 DGRIRSFL 693 (701)
Q Consensus 686 DG~Irvw~ 693 (701)
||.|.||+
T Consensus 704 DgCIFvW~ 711 (1080)
T KOG1408|consen 704 DGCIFVWK 711 (1080)
T ss_pred CceEEEEE
Confidence 99999998
No 114
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.2e-22 Score=211.36 Aligned_cols=273 Identities=19% Similarity=0.321 Sum_probs=216.7
Q ss_pred cccCcceeeecCc-cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEE-EEEcc-CCCEEEEEeCCCcEEEE
Q 005352 201 DKQGEGERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILT-MKFSP-DGQYLASAGDDGVVRLW 277 (701)
Q Consensus 201 ~~~~~~~~~~~~~-~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~-l~fsp-dg~~Lasgs~Dg~I~iW 277 (701)
.|+..+..+...+ ..++.+++|++++||.-... + ......+++|.+-|.+ ++|-+ ++-.|++|+.|.+|.+|
T Consensus 12 gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~--~---~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGK--Q---YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred cCccchheeEecCCeEEeecCCCCceeeeeccCc--c---cccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 4555565544444 45777999999999974322 1 1222457779998888 88876 55579999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
...+. .|+..++||...|
T Consensus 87 ~~~~~--------------------------------------------------------------~P~~~LkgH~snV 104 (745)
T KOG0301|consen 87 KLSQA--------------------------------------------------------------EPLYTLKGHKSNV 104 (745)
T ss_pred ecCCC--------------------------------------------------------------Cchhhhhccccce
Confidence 98665 5677889999999
Q ss_pred EEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecC
Q 005352 358 LDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDI 435 (701)
Q Consensus 358 ~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~ 435 (701)
.+++...++.+++||.|.++++|-.. ++...+. |+..|.++++-| .+ .++||+.|.+|++|.- ++.+ .+.+|
T Consensus 105 C~ls~~~~~~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gH 178 (745)
T KOG0301|consen 105 CSLSIGEDGTLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGH 178 (745)
T ss_pred eeeecCCcCceEecccccceEEecch--hhhcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC--Cchhhhhccc
Confidence 99998878899999999999999754 4444454 999999999998 44 8999999999999976 4444 56679
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
.+.|..+++-+++ .|++++.||.|++|++....+ . ....|...+.++...+ ++..+++++.|++++||+
T Consensus 179 tD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l-~--------~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 179 TDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVL-L--------EMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred hhheeeeEEecCC-CeEeecCCceEEEEeccCcee-e--------eeeccceEEEEEEecC-CCCeEEEecCCceEEEee
Confidence 9999999999875 678999999999999954432 2 1445667888888666 688999999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
.....+.... ....|.++.+-++|. |++|+.||.||||....
T Consensus 248 ~~e~~q~I~l--PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 248 KDECVQVITL--PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred cCceEEEEec--CccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 9866666665 556899999988887 78888999999998763
No 115
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=6.8e-23 Score=194.21 Aligned_cols=307 Identities=16% Similarity=0.262 Sum_probs=221.9
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDP 295 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~ 295 (701)
+.+++.|.+.+||.+... .+...+.||.+.|++|+|++.+.+++|++.|++.+||...-+-.+..-..+....
T Consensus 163 ~gtASADhTA~iWs~Esg-------~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hS 235 (481)
T KOG0300|consen 163 CGTASADHTARIWSLESG-------ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHS 235 (481)
T ss_pred eeecccccceeEEeeccc-------cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCC
Confidence 345788999999976533 2334688999999999999999999999999999999843211100000000000
Q ss_pred ceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECC
Q 005352 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID 374 (701)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~d 374 (701)
.- .+.. ..+.. ..........++.. .-.|+..|.+|.+.|.+..|-..+ ++++++.|
T Consensus 236 sE--------eE~e--~sDe~--~~d~d~~~~sD~~t----------iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 236 SE--------EEEE--HSDEH--NRDTDSSEKSDGHT----------IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred ch--------hhhh--ccccc--ccccccccccCCce----------eeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 00 0000 00000 00000000011111 115788999999999999999888 99999999
Q ss_pred CcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC--cEEEEecCCCcEEEEEEeeCCCeE
Q 005352 375 KTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC--HVVDWVDIRQIVTAVCYRPDGQGG 451 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~--~~~~~~~~~~~i~~i~~sp~g~~l 451 (701)
.+..+||+++++.+..+. |....+.++-+| +.+++++.+.|-+.++||.+.. .+-.+.+|...|+++.|..+. .+
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~v 371 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RV 371 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ce
Confidence 999999999999999887 999999999999 8999999999999999999843 233567899999999998764 68
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc-eee---eccc
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI-GKY---KGLR 527 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~-~~~---~~~~ 527 (701)
++|+.|.+|++||+++....+. ......+++.++.+. +..+|+.--.+.+|++||+.... ..+ ....
T Consensus 372 VSgSDDrTvKvWdLrNMRsplA--------TIRtdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqg 442 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSPLA--------TIRTDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQG 442 (481)
T ss_pred eecCCCceEEEeeeccccCcce--------eeecCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccc
Confidence 8999999999999987653321 112235678888887 66788888889999999987321 111 2234
Q ss_pred CCCCeEEEEEecCC--CEEEEEeCCCcEEEEeCCCCC
Q 005352 528 RSGNQLSACFTSDG--KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 528 ~~~~v~~l~~s~dg--~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|...|+|++|..+. .-|++++.|..+.=|+++.+.
T Consensus 443 HrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 443 HRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 88899999997543 458899999999999998764
No 116
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=208.08 Aligned_cols=406 Identities=13% Similarity=0.112 Sum_probs=287.8
Q ss_pred ccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC--CCEEEEEeCCCcEEEEEe
Q 005352 202 KQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD--GQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~I~iWd~ 279 (701)
|..++.-+.+-+++++.+..++.+.||+......+. .+. ..-++.-.+.|+++ ++|. =+.++.|+.+|.++||++
T Consensus 113 ~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~-~l~-~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nv 189 (910)
T KOG1539|consen 113 HGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEEL-YLQ-STFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNV 189 (910)
T ss_pred ccceEEEEeeecceEEEEEccCcEEEEEeccccccc-ccc-ceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEe
Confidence 344677778889999999999999999976532221 111 11112222237776 4664 345889999999999999
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
.+++ .+++++++...|++
T Consensus 190 rt~K--------------------------------------------------------------~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 190 RTGK--------------------------------------------------------------VVYTFQEFFSRITA 207 (910)
T ss_pred ccCc--------------------------------------------------------------EEEEecccccceeE
Confidence 9874 56677888899999
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCC-CCeEEEEEeeCCCC-EEEEEEcCCcEEEEeCCCCcEEEEe--c
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHS-NYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLSCHVVDWV--D 434 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~-~~V~~l~f~p~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~--~ 434 (701)
+.-+|-= .++.|..+|+|.+++++.++.+..|+|. +.|+.+.|.. ||+ .+++|+..|.+.+||+...+.+... .
T Consensus 208 ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrt-DG~p~las~~~~G~m~~wDLe~kkl~~v~~na 286 (910)
T KOG1539|consen 208 IEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRT-DGNPLLASGRSNGDMAFWDLEKKKLINVTRNA 286 (910)
T ss_pred eccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEecc-CCCeeEEeccCCceEEEEEcCCCeeeeeeecc
Confidence 9888865 8999999999999999999999999986 9999999998 555 5677777899999999998877433 4
Q ss_pred CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 435 ~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
|.+.|+...|.|....+++++.|+.+++|-.+++.-. ........+|..+..++.|.-..+..+++++.|++.+.+
T Consensus 287 h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~----pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 287 HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV----PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred ccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc----chheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 6789999999999999999999999988866644321 112223455666777777765566777777777766655
Q ss_pred e-----------------------------------------------------------------CCccce-eeecc--
Q 005352 515 Q-----------------------------------------------------------------GPNVIG-KYKGL-- 526 (701)
Q Consensus 515 d-----------------------------------------------------------------~~~~~~-~~~~~-- 526 (701)
+ .++... .+...
T Consensus 363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~ 442 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK 442 (910)
T ss_pred hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc
Confidence 4 221100 01000
Q ss_pred ---cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcc-----ccccccccccccC-CceEEecCCCC-CCCCC
Q 005352 527 ---RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHD-----QAKTIRSLERFTT-NASIAIPWCGL-KCGNA 596 (701)
Q Consensus 527 ---~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~a~~~~~~-~~~~~ 596 (701)
.....+++++.++.|++.+.|...|.|-+||++++-..... ....+..+..-.. ...++..-.|. .+|+.
T Consensus 443 ~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 443 RFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDF 522 (910)
T ss_pred cccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEec
Confidence 12367899999999999999999999999999988642211 1222333322222 22233333343 56776
Q ss_pred CCCCccccCC-CCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCC
Q 005352 597 EKEPQLHVSD-DDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHA 675 (701)
Q Consensus 597 ~~~~~~~~~~-~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (701)
.+........ .+++..+.++-. ...++....|-.|.+.|......+..+.+| .+.+..++||++
T Consensus 523 ~~k~l~~~l~l~~~~~~iv~hr~----s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-----------~nritd~~FS~D 587 (910)
T KOG1539|consen 523 KKKVLKKSLRLGSSITGIVYHRV----SDLLAIALDDFSIRVVDVVTRKVVREFWGH-----------GNRITDMTFSPD 587 (910)
T ss_pred CCcceeeeeccCCCcceeeeeeh----hhhhhhhcCceeEEEEEchhhhhhHHhhcc-----------ccceeeeEeCCC
Confidence 6655444332 333444443332 445666777888889998888878888777 578999999999
Q ss_pred CccEEEEecCCCeEeEEe
Q 005352 676 WGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 676 ~g~~ivTgg~DG~Irvw~ 693 (701)
|+.|++|+-|++||+|+
T Consensus 588 -grWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 588 -GRWLISASMDSTIRTWD 604 (910)
T ss_pred -CcEEEEeecCCcEEEEe
Confidence 99999999999999997
No 117
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3.9e-22 Score=203.95 Aligned_cols=302 Identities=18% Similarity=0.331 Sum_probs=225.3
Q ss_pred CceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
...++||++.|.+|...|.|.+||+|+.||+|+||.+.++.++..+.+.. .+.|+.|.+.....+.++..... ..++.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~-~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGEC-VLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCc-eEEeC
Confidence 34678999999999999999999999999999999999999999887765 46666776666655555544433 11111
Q ss_pred Eeee-------------------cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECC---CcEEE
Q 005352 323 SLRR-------------------TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID---KTVRL 379 (701)
Q Consensus 323 ~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~d---g~I~i 379 (701)
..-+ ..+.+.+.|.....+-.++-++..-.|...|..+.|+..| ||++..-+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 1100 0111222222222222334456667799999999999999 98887654 56999
Q ss_pred EECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecC
Q 005352 380 WRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMM 457 (701)
Q Consensus 380 Wd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~d 457 (701)
.++........|. ..+.|.++.|+| ...+|++++ ...|+|||+..+.++ ........|..++++|.|..|++|+.|
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred EecccccccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 9998887777774 678899999999 677777776 568999999887766 445556789999999999999999999
Q ss_pred CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc-----------cceeeecc
Q 005352 458 GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-----------VIGKYKGL 526 (701)
Q Consensus 458 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~-----------~~~~~~~~ 526 (701)
+.+..||+.-.... ......|...++.++|++ .-.++++|+.||.+.|+...- ....+.++
T Consensus 629 ~k~~WfDldlsskP-------yk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKP-------YKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred CeeEEEEcccCcch-------hHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence 99999999765322 223455678899999999 678999999999999986431 11222232
Q ss_pred c--CCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 527 R--RSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 527 ~--~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
. ....|..+.|+|...+|++++.||+|++|
T Consensus 701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeecccceEeecccCCCceEEecCCCceEEee
Confidence 1 23458999999999999999999999998
No 118
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.3e-21 Score=209.88 Aligned_cols=252 Identities=19% Similarity=0.283 Sum_probs=201.5
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
.+|+..-+.|+|.|+|.+|.+++.||.|++|+......
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------------------------------ 47 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------------------------------ 47 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------------------------------
Confidence 36999999999999999999999999999999765420
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeC
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV 405 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~ 405 (701)
.| ..+..+...|.+++.. .++|++|+.+++|.+|.+.+++.-..+. ..-++++++|+-
T Consensus 48 ------------------~P-~ti~~~g~~v~~ia~~-s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g- 106 (933)
T KOG1274|consen 48 ------------------EP-ETIDISGELVSSIACY-SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG- 106 (933)
T ss_pred ------------------CC-chhhccCceeEEEeec-ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-
Confidence 00 0111256677777653 2399999999999999998887654443 577899999998
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCc-EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCH-VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
++++++.|+.|-.|++-++.+.. .....+|..+|.++.|+|++++|++.+.||.|++|++.++.+..............
T Consensus 107 ~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 107 SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence 99999999999999999998765 44777899999999999999999999999999999999876543322111111112
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeeccc--CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLR--RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~--~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
....++.++|+| ++..+++.+.|+.|++|+.......+.... +...+..+.|+|+|+|||+++.||.|.|||+++.+
T Consensus 187 ~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 187 LSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred ccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch
Confidence 245567899999 677888888999999999988777665533 44559999999999999999999999999999743
No 119
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=2.9e-22 Score=188.48 Aligned_cols=231 Identities=21% Similarity=0.342 Sum_probs=176.8
Q ss_pred ccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEee
Q 005352 247 QAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (701)
Q Consensus 247 ~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (701)
+.|.+.|+++...+ .|+|+++|+.||.|.+||+++......-..- .
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li-----------------------------~---- 86 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI-----------------------------A---- 86 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce-----------------------------e----
Confidence 34999999999988 5999999999999999999875311100000 0
Q ss_pred ecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEe
Q 005352 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403 (701)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~ 403 (701)
+..++ -....-.+|+-.|..+.|-|-. .|.+++.|.++++||..+.+....|+.++.|..-+++
T Consensus 87 ---k~~c~-----------v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamS 152 (397)
T KOG4283|consen 87 ---KHKCI-----------VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMS 152 (397)
T ss_pred ---heeee-----------ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcC
Confidence 00000 0011225789999999999954 9999999999999999999999999999999999999
Q ss_pred eCC--CCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCe-EEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 404 PVD--DNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQG-GIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 404 p~~--~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~-l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
|.. ..++++|..+-.|++.|+.++... .+.+|.+.|.++.|+|...+ |++|+.||.|++||++...-
T Consensus 153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg--------- 223 (397)
T KOG4283|consen 153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG--------- 223 (397)
T ss_pred hhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccc---------
Confidence 843 346778888889999999999877 56689999999999998775 67789999999999975311
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc--cceee-ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--VIGKY-KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~--~~~~~-~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
..++.|..+ ..+.. ....|.+.+..++|+.++.++++.+.|..+++|
T Consensus 224 ------------------------------cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 224 ------------------------------CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred ------------------------------eeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence 111111111 01111 123488999999999999999999999999999
Q ss_pred eCCCCCC
Q 005352 557 NCIGHEE 563 (701)
Q Consensus 557 d~~~~~~ 563 (701)
+..++..
T Consensus 274 n~~~G~n 280 (397)
T KOG4283|consen 274 NMESGRN 280 (397)
T ss_pred ecccCcc
Confidence 9998874
No 120
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=7.8e-22 Score=187.61 Aligned_cols=239 Identities=19% Similarity=0.283 Sum_probs=195.7
Q ss_pred cccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCC--EEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ--YLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Lasgs~Dg~I~iWd 278 (701)
-|.+.+.++..++.++++|+.|.+|+|||..++.. ...+..|.+.|+++.|.++-. .|++|+.||.|.+|+
T Consensus 41 aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q-------lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 41 AHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ-------LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccceeEEEecceeEeccCCCCcEEEEeccchhh-------hcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 36677889999999999999999999999865432 134566999999999998765 899999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+..- ..+..+++|.+.|+
T Consensus 114 ~~~W--------------------------------------------------------------~~~~slK~H~~~Vt 131 (362)
T KOG0294|consen 114 VGSW--------------------------------------------------------------ELLKSLKAHKGQVT 131 (362)
T ss_pred cCCe--------------------------------------------------------------EEeeeecccccccc
Confidence 8654 34567789999999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCC
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ 437 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~ 437 (701)
.|+.+|.+ +-++.+.|+.+++||+-+++.-...+-....+.+.|+| .+.+|+.+..+ .|-||.+.+..+......+.
T Consensus 132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~ 209 (362)
T KOG0294|consen 132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDNASVFREIENPK 209 (362)
T ss_pred eeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC-CCCEEEEEecc-EEEEEecccHhHhhhhhccc
Confidence 99999999 77899999999999999998777777666666799999 88888888865 59999999887776666566
Q ss_pred cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe-cCCCCEEEEEECCCcEEEEeC
Q 005352 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL-PQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 438 ~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-p~~~~~l~~~s~dg~I~iwd~ 516 (701)
.+.++.|. ++..|++|..++.|.+||....... .....|..+|.++.+. ...+.+|++++.||.|+|||+
T Consensus 210 r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~--------~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 210 RILCATFL-DGSELLVGGDNEWISLKDTDSDTPL--------TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred cceeeeec-CCceEEEecCCceEEEeccCCCccc--------eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 67777765 5678999999999999999874332 2245677889998843 336789999999999999998
Q ss_pred Ccc
Q 005352 517 PNV 519 (701)
Q Consensus 517 ~~~ 519 (701)
...
T Consensus 281 ~~~ 283 (362)
T KOG0294|consen 281 DME 283 (362)
T ss_pred ccc
Confidence 743
No 121
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.7e-22 Score=184.22 Aligned_cols=239 Identities=19% Similarity=0.264 Sum_probs=189.4
Q ss_pred eecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 209 ~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
+.+.+..+++++.|++|||+....... .....+|.||.++|+.++|.. .|.+||+++.||.|.||.-+++.-
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w-- 92 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW-- 92 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch--
Confidence 457788999999999999999876543 233457999999999999965 699999999999999999777631
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
...+.+..|...|++++|.|.+
T Consensus 93 ----------------------------------------------------------~k~~e~~~h~~SVNsV~waphe 114 (299)
T KOG1332|consen 93 ----------------------------------------------------------TKAYEHAAHSASVNSVAWAPHE 114 (299)
T ss_pred ----------------------------------------------------------hhhhhhhhhcccceeecccccc
Confidence 2234557799999999999986
Q ss_pred ---eEEEEECCCcEEEEECCCC-e-ee--eeecCCCCeEEEEEeeCC--C-----------CEEEEEEcCCcEEEEeCCC
Q 005352 367 ---YLLSASIDKTVRLWRVGND-H-CL--RVFPHSNYVTCVHFNPVD--D-----------NYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 367 ---~l~s~s~dg~I~iWd~~~~-~-~~--~~~~h~~~V~~l~f~p~~--~-----------~~l~sgs~dg~v~iwd~~~ 426 (701)
.|++++.||.|.|.+.++. . .. ..+.|.-.|+++.|.|.. + +.|++|+.|..|+||+..+
T Consensus 115 ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~ 194 (299)
T KOG1332|consen 115 YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS 194 (299)
T ss_pred cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC
Confidence 8899999999999988765 1 11 123399999999999831 2 5699999999999999988
Q ss_pred CcEE---EEecCCCcEEEEEEeeCC----CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 427 CHVV---DWVDIRQIVTAVCYRPDG----QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 427 ~~~~---~~~~~~~~i~~i~~sp~g----~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
++-+ .+.+|.+.|..++|.|.- .+|++++.||+|.||..+.........+ .......+..+.|+. .+
T Consensus 195 ~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl-----l~~f~~~~w~vSWS~-sG 268 (299)
T KOG1332|consen 195 DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL-----LEEFPDVVWRVSWSL-SG 268 (299)
T ss_pred cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc-----cccCCcceEEEEEec-cc
Confidence 6432 366799999999999954 5799999999999999874322211111 122446688999999 79
Q ss_pred CEEEEEECCCcEEEEeCC
Q 005352 500 SKVMVSCADSQVRILQGP 517 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~ 517 (701)
+.|++++.|+.|.+|.-.
T Consensus 269 n~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 269 NILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cEEEEecCCcEEEEEEeC
Confidence 999999999999999643
No 122
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.3e-20 Score=195.03 Aligned_cols=272 Identities=14% Similarity=0.140 Sum_probs=194.4
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEeecCeeeeeecCCCCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 294 (701)
+++++.|+.+++|+..... ..+.+..|.. +.+++|+|+|++| ++++.++.|++||+.+++.+..
T Consensus 4 ~~s~~~d~~v~~~d~~t~~-------~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------- 68 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLE-------VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT------- 68 (300)
T ss_pred EEEecCCCEEEEEECCCCc-------eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe-------
Confidence 4567889999999975432 1123444443 6789999999976 5677899999999887653221
Q ss_pred CceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE-EEE
Q 005352 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SAS 372 (701)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s 372 (701)
+..+. .+..++|+|++ .++ +++
T Consensus 69 -------------------------------------------------------~~~~~-~~~~~~~~~~g~~l~~~~~ 92 (300)
T TIGR03866 69 -------------------------------------------------------LPSGP-DPELFALHPNGKILYIANE 92 (300)
T ss_pred -------------------------------------------------------ccCCC-CccEEEECCCCCEEEEEcC
Confidence 11222 24567899998 554 456
Q ss_pred CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCC-cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeE
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG-KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGG 451 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg-~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l 451 (701)
.++.|++||+.+.+.+..+.+...+.+++|+| ++.+++++..++ .+.+||..+++..........+..++|+|+++.+
T Consensus 93 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 93 DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKEL 171 (300)
T ss_pred CCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEE
Confidence 68999999999998888887666678999999 999999888765 4677899888776554455567889999999988
Q ss_pred EEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE-EEEECCCcEEEEeCCccceeeecccCC
Q 005352 452 IVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV-MVSCADSQVRILQGPNVIGKYKGLRRS 529 (701)
Q Consensus 452 ~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l-~~~s~dg~I~iwd~~~~~~~~~~~~~~ 529 (701)
++++ .++.|++||+.+.+............ .........+.|+| ++.++ ++.+.++.|.+||..+....... .+.
T Consensus 172 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~ 248 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATRKVIKKITFEIPGV-HPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVLDYL-LVG 248 (300)
T ss_pred EEEcCCCCEEEEEEcCcceeeeeeeeccccc-ccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeC
Confidence 6654 58999999999876543222111110 01112345688999 55654 44456778999999765443222 244
Q ss_pred CCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCC
Q 005352 530 GNQLSACFTSDGKHIVSA-GEDSNVYMWNCIGHE 562 (701)
Q Consensus 530 ~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~~~ 562 (701)
..+.+++|+|+|++|+++ +.+|.|++||+.+++
T Consensus 249 ~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 249 QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 578999999999999886 468999999999876
No 123
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=3.6e-22 Score=205.85 Aligned_cols=254 Identities=21% Similarity=0.350 Sum_probs=186.4
Q ss_pred EEEEEccC---CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCc
Q 005352 254 LTMKFSPD---GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (701)
Q Consensus 254 ~~l~fspd---g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (701)
.+..|++. ...||.+.+||.|.++|.....
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~----------------------------------------------- 85 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIV----------------------------------------------- 85 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhh-----------------------------------------------
Confidence 44677653 4579999999999999976532
Q ss_pred cEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeee---ecCCCCeEEEEEeeCC
Q 005352 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRV---FPHSNYVTCVHFNPVD 406 (701)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~---~~h~~~V~~l~f~p~~ 406 (701)
|++.+..+.....|.+.|.++.|.|.. .|++++.|.++++||+.+..++.. +.|...|.+++|.|.+
T Consensus 86 ---------fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n 156 (720)
T KOG0321|consen 86 ---------FRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN 156 (720)
T ss_pred ---------cchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCC
Confidence 111123345567899999999999954 999999999999999999988876 4599999999999988
Q ss_pred CCEEEEEEcCCcEEEEeCCCCcE----------------------------EEEecCCCcEEE---EEEeeCCCeEEEEe
Q 005352 407 DNYFISGSIDGKVRIWAVLSCHV----------------------------VDWVDIRQIVTA---VCYRPDGQGGIVGS 455 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~~----------------------------~~~~~~~~~i~~---i~~sp~g~~l~~gs 455 (701)
...|++|+.||.|.|||++-... ..+..+...|.+ +.+..|...|++++
T Consensus 157 ~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSag 236 (720)
T KOG0321|consen 157 PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAG 236 (720)
T ss_pred CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeecc
Confidence 99999999999999999864320 011223333554 55666888888887
Q ss_pred c-CCcEEEEECCCCeeeeeeeEEeecccCCC---CCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc----eeeeccc
Q 005352 456 M-MGDCRFYNVSDNHLELDAEICVHSKKKAP---CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI----GKYKGLR 527 (701)
Q Consensus 456 ~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~---~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~ 527 (701)
. |+.|++||++.+................+ ...++++.... .|.+|++.+.|+.|++|++.... ..+.+..
T Consensus 237 a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~ 315 (720)
T KOG0321|consen 237 AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL 315 (720)
T ss_pred CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcc
Confidence 7 99999999998766544332222112222 34566666665 57888888889999999987433 3333332
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCC
Q 005352 528 RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEP 564 (701)
Q Consensus 528 ~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~ 564 (701)
....-..-..+|++.+|++|+.|...++|.+.+.+.+
T Consensus 316 ~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 316 NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred cceeeeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 2223334457899999999999999999999998754
No 124
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8e-21 Score=181.62 Aligned_cols=294 Identities=15% Similarity=0.217 Sum_probs=218.8
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEc--CCcEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI--DGKVR 420 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~--dg~v~ 420 (701)
++-+.|..-...|.++.|+++| +|++++.|.+++|||..++++++++. +.-.|..++|.. ..+.++.++. |.+||
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceE
Confidence 3444555567889999999999 99999999999999999999999998 455688888887 6667776666 88999
Q ss_pred EEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 421 IWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 421 iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
..++.+.+.++ +.+|...|++++.+|-+..+++++.|++|++||++..+++-... ...-..++|.| .+
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~----------~~~~pi~AfDp-~G 152 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN----------LSGRPIAAFDP-EG 152 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe----------cCCCcceeECC-CC
Confidence 99999999885 55789999999999999999999999999999999765432111 12234578888 78
Q ss_pred CEEEEEECCCcEEEEeCCcc----ceeeecc-cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccc
Q 005352 500 SKVMVSCADSQVRILQGPNV----IGKYKGL-RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRS 574 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~~~----~~~~~~~-~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~ 574 (701)
-++|++.....|++||++.. ...+... ......+.+.|+|||++|+.++..+.+++.|--+|.... +
T Consensus 153 LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~--------t 224 (311)
T KOG1446|consen 153 LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS--------T 224 (311)
T ss_pred cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee--------e
Confidence 88888888889999999853 3333332 345678999999999999999999999999987776211 1
Q ss_pred cccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCcccccccc
Q 005352 575 LERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASA 654 (701)
Q Consensus 575 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~ 654 (701)
++... ....-.-..+|.|+ ++-+++++.||++.+|+.+....+..+.+.
T Consensus 225 fs~~~-------------------------~~~~~~~~a~ftPd----s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-- 273 (311)
T KOG1446|consen 225 FSGYP-------------------------NAGNLPLSATFTPD----SKFVLSGSDDGTIHVWNLETGKKVAVLRGP-- 273 (311)
T ss_pred Eeecc-------------------------CCCCcceeEEECCC----CcEEEEecCCCcEEEEEcCCCcEeeEecCC--
Confidence 10000 00001123467897 777788888999999999888876665442
Q ss_pred chhhhhhhhhcccccccccCCCccEEEEecCCCeEeEE--eecCCCcC
Q 005352 655 LHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSF--LNYGLPIP 700 (701)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw--~~~g~p~~ 700 (701)
+ .+.+.++.+.+- -.++|||+. .+-.| ...++|.+
T Consensus 274 -~-------~~~~~~~~fnP~-~~mf~sa~s--~l~fw~p~~~~~~~~ 310 (311)
T KOG1446|consen 274 -N-------GGPVSCVRFNPR-YAMFVSASS--NLVFWLPDEDALPAH 310 (311)
T ss_pred -C-------CCCccccccCCc-eeeeeecCc--eEEEEeccccccCCC
Confidence 1 346667766666 566777765 55555 34566543
No 125
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=1.1e-21 Score=203.74 Aligned_cols=280 Identities=18% Similarity=0.216 Sum_probs=218.6
Q ss_pred CccccccccccceEEEEEccCcc-----------chhhhc-cc------------------CceeccCCCcEEEEEEccC
Q 005352 212 NEEDAMFCSKVQRVKVYHCKKRS-----------KELSAL-YK------------------GQEIQAHDGSILTMKFSPD 261 (701)
Q Consensus 212 ~~~~~~~~~~d~~v~vw~~~~~~-----------~~~~~~-~~------------------~~~l~~H~~~I~~l~fspd 261 (701)
-..-+++|+.|++|++|++.... .++... +. ....-...-.|.+++.+|+
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD 470 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence 34457889999999999986411 011100 00 0011223457999999999
Q ss_pred CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCcccc
Q 005352 262 GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFR 341 (701)
Q Consensus 262 g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (701)
|++||+|..-|+++||++.+.+
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~---------------------------------------------------------- 492 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELE---------------------------------------------------------- 492 (1080)
T ss_pred cceecccCccCceEEEEehhhh----------------------------------------------------------
Confidence 9999999999999999998753
Q ss_pred ccCCCeEEEcCCccCeEEEEEecCC----eEEEEECCCcEEEEECCCC-eeeeeec-CCCCeEEEEEeeCCC--CEEEEE
Q 005352 342 ILEKPLHEFHGHSGEILDLSWSKNN----YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDD--NYFISG 413 (701)
Q Consensus 342 ~~~~~~~~~~~h~~~I~~l~~s~~~----~l~s~s~dg~I~iWd~~~~-~~~~~~~-h~~~V~~l~f~p~~~--~~l~sg 413 (701)
.+..+..|..+|.|+.|+... +|++++.|..|.|+|+... .+++++. |...|+++.|.. ++ ..++++
T Consensus 493 ----~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~Misc 567 (1080)
T KOG1408|consen 493 ----YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISC 567 (1080)
T ss_pred ----hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEec
Confidence 234456799999999998743 8999999999999999765 3445554 899999999988 55 678999
Q ss_pred EcCCcEEEEeCCC---CcEEE---EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCC
Q 005352 414 SIDGKVRIWAVLS---CHVVD---WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 414 s~dg~v~iwd~~~---~~~~~---~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 487 (701)
+.|..|.+--.+. +.+.. ..-.+..+..++..|..+++++++.|..|+||++..++.... ......+.+
T Consensus 568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~-----FKgs~~~eG 642 (1080)
T KOG1408|consen 568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS-----FKGSRDHEG 642 (1080)
T ss_pred cCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee-----ecccccCCC
Confidence 9998776433221 22111 111245689999999999999999999999999999886532 223445667
Q ss_pred CeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 488 RITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
....+...| .+.++++.+.|.++.++|...........+|...|+.+.|.+|.++|++.+.||.|.||.+..
T Consensus 643 ~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 643 DLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 788899999 799999999999999999998888888888999999999999999999999999999999854
No 126
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.2e-21 Score=204.58 Aligned_cols=237 Identities=16% Similarity=0.276 Sum_probs=199.0
Q ss_pred cCcceeeec--CccccccccccceEEEEEccCccchhhhcccCceecc-CCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 005352 203 QGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQA-HDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 203 ~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 279 (701)
...+.++.+ ++.++++|..+|.|.|||.... .....+.+ |.+.|-+++|. +..|.+|+.|+.|..+|+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~-------k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ-------KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhc-------cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence 344555554 4788999999999999986432 22234556 99999999997 668999999999999999
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
...+.. ...+.+|...|..
T Consensus 288 R~~~~~-------------------------------------------------------------~~~~~~H~qeVCg 306 (484)
T KOG0305|consen 288 RISQHV-------------------------------------------------------------VSTLQGHRQEVCG 306 (484)
T ss_pred ecchhh-------------------------------------------------------------hhhhhcccceeee
Confidence 876521 1136789999999
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEE--cCCcEEEEeCCCCcEEEEecC
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs--~dg~v~iwd~~~~~~~~~~~~ 435 (701)
++|++++ +|++|+.|+.+.|||....+++..+. |...|.+++|+|....+||+|+ .|+.|++||..++..+.....
T Consensus 307 Lkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 307 LKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred eEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc
Confidence 9999999 99999999999999997777666665 9999999999998899999976 689999999999999999999
Q ss_pred CCcEEEEEEeeCCCeEEEE--ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 436 RQIVTAVCYRPDGQGGIVG--SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~g--s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
...|.++.|++..+.|+++ ..++.|.||+..+.+.. .....|..+|..++++| ++..+++|+.|.++++
T Consensus 387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~--------~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV--------AELLGHTSRVLYLALSP-DGETIVTGAADETLRF 457 (484)
T ss_pred CCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee--------eeecCCcceeEEEEECC-CCCEEEEecccCcEEe
Confidence 9999999999999888774 45778999999874432 23566788999999999 7999999999999999
Q ss_pred EeCCc
Q 005352 514 LQGPN 518 (701)
Q Consensus 514 wd~~~ 518 (701)
|++-.
T Consensus 458 w~~f~ 462 (484)
T KOG0305|consen 458 WNLFD 462 (484)
T ss_pred ccccC
Confidence 99764
No 127
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.7e-21 Score=185.24 Aligned_cols=297 Identities=19% Similarity=0.250 Sum_probs=203.1
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe-----eeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEE
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-----CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~-----~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~ 420 (701)
+..+++|.+.|++++|+.+| +|+|++.|++|+||+++... +++.--.-+..+.+.|.|....++++.-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45678999999999999999 99999999999999987642 2222223346788999994445555666667899
Q ss_pred EEeCCCCc-------EEEE------ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCC
Q 005352 421 IWAVLSCH-------VVDW------VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 421 iwd~~~~~-------~~~~------~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 487 (701)
+|.+...+ .+.+ ..|.-.+..+-...++.+|++++.|..|.+|++. ++.... ......
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~--------idtnq~ 229 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS--------IDTNQS 229 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee--------eccccc
Confidence 99775432 1111 1234456666677788999999999999999998 443221 111223
Q ss_pred CeeEEEEecCCCCEEEEEECCCcEEEEeC--------CccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 488 RITGFQFLPQDSSKVMVSCADSQVRILQG--------PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~dg~I~iwd~--------~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
.-+..+.+| ++.++++++..-.|++|.. ......|...+|...|..++|+++...++|.+.||+++|||.+
T Consensus 230 ~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 230 SNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred cccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 345678899 8999999999999999984 2455667777899999999999999999999999999999976
Q ss_pred CCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCC
Q 005352 560 GHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWP 639 (701)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~ 639 (701)
-..+.. ..++.++.. +.+++ .....+..|.++|.+.. |+ .+....++.+.
T Consensus 309 VrY~~~-qDpk~Lk~g-----------------------~~pl~-aag~~p~RL~lsP~g~~----lA-~s~gs~l~~~~ 358 (420)
T KOG2096|consen 309 VRYEAG-QDPKILKEG-----------------------SAPLH-AAGSEPVRLELSPSGDS----LA-VSFGSDLKVFA 358 (420)
T ss_pred ceEecC-CCchHhhcC-----------------------Ccchh-hcCCCceEEEeCCCCcE----EE-eecCCceEEEE
Confidence 433210 011111111 01111 11222335677886333 22 23444566666
Q ss_pred CccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEeec
Q 005352 640 EEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNY 695 (701)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~~ 695 (701)
.+.....-.+ .+.+...+.+++++++ |++|+|+| |..+|+++|.
T Consensus 359 se~g~~~~~~----------e~~h~~~Is~is~~~~-g~~~atcG-dr~vrv~~nt 402 (420)
T KOG2096|consen 359 SEDGKDYPEL----------EDIHSTTISSISYSSD-GKYIATCG-DRYVRVIRNT 402 (420)
T ss_pred cccCccchhH----------HHhhcCceeeEEecCC-CcEEeeec-ceeeeeecCC
Confidence 5554432221 2233567888899999 99999999 6899999975
No 128
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=7.4e-22 Score=205.47 Aligned_cols=238 Identities=18% Similarity=0.306 Sum_probs=197.7
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+++.||+..|..+++.+.. .++++|.||++++|+-...+.
T Consensus 8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~--------------------------------------- 47 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY--------------------------------------- 47 (745)
T ss_pred EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCccc---------------------------------------
Confidence 5788999999999987554 899999999999999655432
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEE-EEEec-CC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD-LSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~-l~~s~-~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~ 399 (701)
...+.+.+|.+.|.. +++-+ ++ .+++|++|++|.+|.+.+..++.++. |...|.|
T Consensus 48 ---------------------l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ 106 (745)
T KOG0301|consen 48 ---------------------LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCS 106 (745)
T ss_pred ---------------------ccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceee
Confidence 223456778777777 77765 33 89999999999999999999999887 9999999
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
+.... ++. +++|+.|.++++|-+.... ..+.+|...|+++..-|.+ .+++|+.|.+|++|.-.+. .
T Consensus 107 ls~~~-~~~-~iSgSWD~TakvW~~~~l~-~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~----------l 172 (745)
T KOG0301|consen 107 LSIGE-DGT-LISGSWDSTAKVWRIGELV-YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTL----------L 172 (745)
T ss_pred eecCC-cCc-eEecccccceEEecchhhh-cccCCcchheeeeeecCCC-cEEeccCcceeeeccCCch----------h
Confidence 99775 554 9999999999999764322 2477899999999999988 8899999999999987432 1
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
.....|..-|.++++.+ ...+++++.||.|++|++ +....+..++|...|++++..+++..|+|+++|++++||+..
T Consensus 173 ~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 173 KTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred hhhccchhheeeeEEec--CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 12456888999999998 468999999999999999 455566667799999999988889999999999999999966
No 129
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.5e-21 Score=183.87 Aligned_cols=242 Identities=17% Similarity=0.243 Sum_probs=188.8
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccE
Q 005352 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (701)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (701)
-.|+.|++.|.+||+|..||.|.|||+.+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~------------------------------------------------- 56 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR------------------------------------------------- 56 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-------------------------------------------------
Confidence 6899999999999999999999999997752
Q ss_pred EEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE
Q 005352 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI 411 (701)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~ 411 (701)
+-..+.+|..+|++++||++| .|+|+|.|..|++||+..+.+++.+....+|+.+.|+|.+.+.++
T Consensus 57 -------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~v 123 (405)
T KOG1273|consen 57 -------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCV 123 (405)
T ss_pred -------------hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEE
Confidence 223457899999999999999 999999999999999999999999999999999999997777777
Q ss_pred EEEcCCcEEEEeCCCCcEEEEe--c---CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCC
Q 005352 412 SGSIDGKVRIWAVLSCHVVDWV--D---IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486 (701)
Q Consensus 412 sgs~dg~v~iwd~~~~~~~~~~--~---~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 486 (701)
+.-.+..-.+-++..+....+. . ......+..|.+.|+++++|+..|.+.+|+..+.++.....+.. .
T Consensus 124 a~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-------~ 196 (405)
T KOG1273|consen 124 ATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-------V 196 (405)
T ss_pred EEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-------h
Confidence 7766666666666543222111 1 11223344689999999999999999999999887654433322 3
Q ss_pred CCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce-----------eeecccCCCCeEEEEEecCCCEEEEEeC-CCcEE
Q 005352 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG-----------KYKGLRRSGNQLSACFTSDGKHIVSAGE-DSNVY 554 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~-----------~~~~~~~~~~v~~l~~s~dg~~l~sgs~-Dg~I~ 554 (701)
..|..+.++. .+..|++.+.|..||.|++..... +++-..+...=.+++|+.+|.|++.++. -..+|
T Consensus 197 ~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLY 275 (405)
T KOG1273|consen 197 QAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALY 275 (405)
T ss_pred eeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEE
Confidence 5577888887 789999999999999999763221 2222223444568899999999988863 35699
Q ss_pred EEeCCCCCCC
Q 005352 555 MWNCIGHEEP 564 (701)
Q Consensus 555 iWd~~~~~~~ 564 (701)
||.-..|...
T Consensus 276 IWE~~~GsLV 285 (405)
T KOG1273|consen 276 IWEKSIGSLV 285 (405)
T ss_pred EEecCCccee
Confidence 9998887743
No 130
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.7e-20 Score=190.77 Aligned_cols=249 Identities=16% Similarity=0.240 Sum_probs=204.8
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
..+|.+|+|+...+.||.+-.||.|.||++..+=..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~-------------------------------------------- 60 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL-------------------------------------------- 60 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCcee--------------------------------------------
Confidence 467999999999999999999999999999774211
Q ss_pred ccEEEcCCccccccCCCeEEEcCC-ccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCC
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGH-SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDD 407 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~ 407 (701)
...+.++ ...|.+|+|++.+.|++.+.+|.|.-||+.+.+.+..+. ..+.|.+++.+| .+
T Consensus 61 -----------------~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~ 122 (691)
T KOG2048|consen 61 -----------------EPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-EN 122 (691)
T ss_pred -----------------eEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-cc
Confidence 1223333 457999999988899999999999999999999988887 678999999999 88
Q ss_pred CEEEEEEcCCcEEEEeCCCCcEEEE---ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 408 NYFISGSIDGKVRIWAVLSCHVVDW---VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 408 ~~l~sgs~dg~v~iwd~~~~~~~~~---~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
..++.|+.||.+..+++..+.+... ....+.+.+++|+|++..++.|+.||.|++||...+.-.......+....+.
T Consensus 123 ~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~ 202 (691)
T KOG2048|consen 123 TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR 202 (691)
T ss_pred ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccC
Confidence 9999999999888888887766532 2335789999999999999999999999999999887655333333333333
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
...-|.++.|.. ...|++|..-|+|.+||.......-....|...|.+++.++++.++++++.|+.|..|...+.+
T Consensus 203 ~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 203 EPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred CceEEEEEEEee--cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence 455678888885 5789999999999999987655544444489999999999999999999999999999987764
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3e-21 Score=192.72 Aligned_cols=254 Identities=15% Similarity=0.167 Sum_probs=199.0
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEe
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFT 301 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~ 301 (701)
-..+.+|.+.+......... -.++|.|++-+|+|.+|+.|+..|.|.+|.+.+|..
T Consensus 60 rp~l~vw~i~k~~~~~q~~v-------~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L----------------- 115 (476)
T KOG0646|consen 60 RPLLHVWEILKKDQVVQYIV-------LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL----------------- 115 (476)
T ss_pred CccccccccCchhhhhhhcc-------cccceeeeecCCCceEEEeecccCcEEEEEeccccH-----------------
Confidence 34788998876554432111 357899999999999999999999999999999853
Q ss_pred eccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEE
Q 005352 302 VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLW 380 (701)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iW 380 (701)
+..+.+|-..|+||.|+.|+ +|+|||.||.|.+|
T Consensus 116 ---------------------------------------------L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 116 ---------------------------------------------LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred ---------------------------------------------HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEE
Confidence 34457799999999999999 99999999999999
Q ss_pred ECC---------CCeeeeeec-CCCCeEEEEEeeC-CCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCC
Q 005352 381 RVG---------NDHCLRVFP-HSNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ 449 (701)
Q Consensus 381 d~~---------~~~~~~~~~-h~~~V~~l~f~p~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~ 449 (701)
.+. +-+++..|. |.-+|+.+...+. ...++++++.|.++++||+..+.++.....+..+++++.+|-++
T Consensus 151 ~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~ 230 (476)
T KOG0646|consen 151 LLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAER 230 (476)
T ss_pred EEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEccccc
Confidence 863 234566665 8999999998762 35689999999999999999999999889999999999999999
Q ss_pred eEEEEecCCcEEEEECCCCeeeee--------eeEEeecccCCCCC--CeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 450 GGIVGSMMGDCRFYNVSDNHLELD--------AEICVHSKKKAPCK--RITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 450 ~l~~gs~dg~v~i~d~~~~~~~~~--------~~~~~~~~~~~~~~--~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
.+++|+.+|.|.+.++........ ...........|.+ .|+|++++- ++.+|++|+.||+|+|||+...
T Consensus 231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchH
Confidence 999999999999988765431100 00001111233444 899999999 8999999999999999998765
Q ss_pred ceeeecccCCCCeEEEEEecCCCEEE
Q 005352 520 IGKYKGLRRSGNQLSACFTSDGKHIV 545 (701)
Q Consensus 520 ~~~~~~~~~~~~v~~l~~s~dg~~l~ 545 (701)
...-......++|+.+.+.|-.+-++
T Consensus 310 Q~iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 310 QCIRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred HHHHHHhhhccccceeEeecccccee
Confidence 44433333678899999876543333
No 132
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.4e-20 Score=178.60 Aligned_cols=252 Identities=20% Similarity=0.280 Sum_probs=188.0
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
.+|+.-|.++.|.+.|+.+|||+.|++|+|||.......-
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W---------------------------------------- 49 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW---------------------------------------- 49 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce----------------------------------------
Confidence 4699999999999999999999999999999975442100
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC--C-eEEEEECCCcEEEEECCCC-------e--eeeee-cC
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGND-------H--CLRVF-PH 393 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~-------~--~~~~~-~h 393 (701)
......+.|.+.|..+.|.+. | .+++++.|+++.||.-... + ...++ ..
T Consensus 50 ------------------~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds 111 (361)
T KOG2445|consen 50 ------------------SCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS 111 (361)
T ss_pred ------------------EEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC
Confidence 122345779999999999775 3 8999999999999965211 1 11222 26
Q ss_pred CCCeEEEEEeeC-CCCEEEEEEcCCcEEEEeCCCCcEE------EE--------ecCCCcEEEEEEeeC---CCeEEEEe
Q 005352 394 SNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVV------DW--------VDIRQIVTAVCYRPD---GQGGIVGS 455 (701)
Q Consensus 394 ~~~V~~l~f~p~-~~~~l~sgs~dg~v~iwd~~~~~~~------~~--------~~~~~~i~~i~~sp~---g~~l~~gs 455 (701)
...|+.++|.|. -+-.|++++.||.||||+....--+ .- -.+..+..|+.|+|. ...|++|+
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs 191 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS 191 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEc
Confidence 788999999993 3567899999999999987543211 11 124566889999983 46788888
Q ss_pred cC-----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC---CEEEEEECCCcEEEEeCCcc--------
Q 005352 456 MM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS---SKVMVSCADSQVRILQGPNV-------- 519 (701)
Q Consensus 456 ~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~---~~l~~~s~dg~I~iwd~~~~-------- 519 (701)
.+ +.+.||....+........ ....+..+|+.++|.|+-+ .+|++++.|| |+||.++..
T Consensus 192 ~e~a~~~~~~~Iye~~e~~rKw~kva----~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee 266 (361)
T KOG2445|consen 192 DEDAPHLNKVKIYEYNENGRKWLKVA----ELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEE 266 (361)
T ss_pred ccCCccccceEEEEecCCcceeeeeh----hcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhc
Confidence 76 5788998876653332211 2336778999999999643 5789999999 999997621
Q ss_pred ------------ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 520 ------------IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 520 ------------~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
...-....|.+.|..+.|+-.|..|++.|.||.|++|..+-.
T Consensus 267 ~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 267 VLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred ccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 111123348899999999999999999999999999985543
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=1.2e-20 Score=194.69 Aligned_cols=280 Identities=17% Similarity=0.223 Sum_probs=201.9
Q ss_pred ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCC
Q 005352 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 294 (701)
.|+.+..+|.|.+++.......+... ......+|.+.|..++|.|....|++++.|.++++||+.+.....
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~-~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G-------- 136 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEER-QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG-------- 136 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhh-hhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec--------
Confidence 35558889999999976544332111 113467899999999999966789999999999999998875321
Q ss_pred CceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEE
Q 005352 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSAS 372 (701)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s 372 (701)
...+.||...|.+++|++.+ .|++|+
T Consensus 137 ----------------------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGg 164 (720)
T KOG0321|consen 137 ----------------------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGG 164 (720)
T ss_pred ----------------------------------------------------ceeecccccccchhhhccCCCcceeecc
Confidence 12467899999999999988 999999
Q ss_pred CCCcEEEEECCCCe--------------------eeeee--------cCCC----CeEEEEEeeCCCCEEEEEEc-CCcE
Q 005352 373 IDKTVRLWRVGNDH--------------------CLRVF--------PHSN----YVTCVHFNPVDDNYFISGSI-DGKV 419 (701)
Q Consensus 373 ~dg~I~iWd~~~~~--------------------~~~~~--------~h~~----~V~~l~f~p~~~~~l~sgs~-dg~v 419 (701)
.||.|.|||++... ..+.. .+.. .|+.+.|- |+..||+++. |+.|
T Consensus 165 RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~i 242 (720)
T KOG0321|consen 165 RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTI 242 (720)
T ss_pred CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcce
Confidence 99999999986432 00000 0222 35555554 8889999887 9999
Q ss_pred EEEeCCCCcEEE---------EecC---CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCC
Q 005352 420 RIWAVLSCHVVD---------WVDI---RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 420 ~iwd~~~~~~~~---------~~~~---~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 487 (701)
+|||+++..... +..+ ...+.+++....|.+|++.+.|+.|++|++..........+. .....
T Consensus 243 KVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s-----g~~~~ 317 (720)
T KOG0321|consen 243 KVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS-----GKLNS 317 (720)
T ss_pred EEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc-----Ccccc
Confidence 999998764331 1112 234778888888999999999999999999875432211110 00011
Q ss_pred C-eeEEEEecCCCCEEEEEECCCcEEEEeCCccceee-ecccCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCCC
Q 005352 488 R-ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY-KGLRRSGNQLSACFTSDG-KHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 488 ~-i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
. ...-..+| ++.++++|+.|...++|.+....... ...+|...|++++|.|.. .-++|+++|..++||++.++-+
T Consensus 318 sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 318 SFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred eeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 1 12223466 78999999999999999998655433 234588999999998743 3577779999999999977654
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.9e-19 Score=187.34 Aligned_cols=279 Identities=16% Similarity=0.246 Sum_probs=216.8
Q ss_pred ccCcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccC-CCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 202 KQGEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAH-DGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 202 ~~~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
...++.+++++ ...++++..+|.|.||+... ..+....+.+| .+.|-+++|+ ++..|++.+.+|.|.-||
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~------~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN------NWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWD 96 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCC------CceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEe
Confidence 44566665554 45788899999999998654 23334456666 4689999999 455889999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+.+. ...+....+.|.
T Consensus 97 l~~lk~--------------------------------------------------------------~~~~d~~gg~IW 114 (691)
T KOG2048|consen 97 LHTLKQ--------------------------------------------------------------KYNIDSNGGAIW 114 (691)
T ss_pred cccCce--------------------------------------------------------------eEEecCCCccee
Confidence 988753 334455668999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV- 433 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~- 433 (701)
+++.+|.+ .++.|+.||.+...+...++...... .++.|.++.|+| ++..+++|+.||.|++||..+++.+...
T Consensus 115 siai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~ 193 (691)
T KOG2048|consen 115 SIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIIT 193 (691)
T ss_pred EEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEee
Confidence 99999998 99999999988888887776654432 668999999999 9999999999999999999998766522
Q ss_pred ----cC----CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE
Q 005352 434 ----DI----RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 434 ----~~----~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
.. ...|+++.|-.+ ..|++|...|+|.+||...+.+.. ....|...|.+++..+ +++.++++
T Consensus 194 ~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiq--------S~~~h~adVl~Lav~~-~~d~vfsa 263 (691)
T KOG2048|consen 194 MQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQ--------SHSCHDADVLALAVAD-NEDRVFSA 263 (691)
T ss_pred ecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhh--------hhhhhhcceeEEEEcC-CCCeEEEc
Confidence 21 234778887755 478999999999999998876543 2445667899999998 78899999
Q ss_pred ECCCcEEEEeCCccce----eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 506 CADSQVRILQGPNVIG----KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 506 s~dg~I~iwd~~~~~~----~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+.|+.|.-|....... ......|...|.+++..++ .|++|+.|..+.+=.....+
T Consensus 264 Gvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~ 322 (691)
T KOG2048|consen 264 GVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK 322 (691)
T ss_pred cCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccC
Confidence 9999998887664433 2222337788999998877 89999999999987766533
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=1.1e-21 Score=196.55 Aligned_cols=244 Identities=17% Similarity=0.280 Sum_probs=201.4
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
-+|..-|.++..|...+++.|||. |.|+|||+......
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k----------------------------------------- 453 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK----------------------------------------- 453 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC-----------------------------------------
Confidence 468899999999999999999997 78999999764210
Q ss_pred cCCccEEEcCCccccccCCCeEEEc--CCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEE
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFH--GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCV 400 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l 400 (701)
.|+..+. ....-|.++...|++ .|++|+.-.++.|||+.......... ..-.++++
T Consensus 454 ------------------~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyAL 515 (705)
T KOG0639|consen 454 ------------------SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 515 (705)
T ss_pred ------------------CccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhh
Confidence 1111111 234578899999999 99999999999999998765433332 23457889
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
+.+| |.++.++++.||.|.|||+.+..++ .+.+|.+.+.||.++++|..|.+|+-|.+|+.||++++...+...
T Consensus 516 a~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd---- 590 (705)
T KOG0639|consen 516 AISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD---- 590 (705)
T ss_pred hcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh----
Confidence 9999 9999999999999999999998877 567899999999999999999999999999999999887554332
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
....|.++.++| .+.++++|-.++.+.|..... ..++..+.|..-|.++.|.+.|+++++.+.|..+..|..-
T Consensus 591 -----F~SQIfSLg~cP-~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 591 -----FSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred -----hhhhheecccCC-CccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhhccCc
Confidence 235689999999 789999999999999988754 4456666799999999999999999999999999999866
Q ss_pred CCC
Q 005352 560 GHE 562 (701)
Q Consensus 560 ~~~ 562 (701)
-+.
T Consensus 664 yGa 666 (705)
T KOG0639|consen 664 YGA 666 (705)
T ss_pred ccc
Confidence 554
No 136
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=3.8e-21 Score=186.91 Aligned_cols=259 Identities=22% Similarity=0.275 Sum_probs=198.2
Q ss_pred eccCCCcEEEEEEccCC--CEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 246 IQAHDGSILTMKFSPDG--QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg--~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
..+|.+.|..+.-++-| .+.|+-+..|.|+||++...-. .+.-+.. .
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~--~l~~~~~--------------------------~--- 195 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN--ALSEPGL--------------------------E--- 195 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhh--hhcCccc--------------------------c---
Confidence 45688888888887754 5677778899999999865311 0000000 0
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC--CeEEEEECCCcEEEEECCCCeeee----eecCCCCe
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--NYLLSASIDKTVRLWRVGNDHCLR----VFPHSNYV 397 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~~l~s~s~dg~I~iWd~~~~~~~~----~~~h~~~V 397 (701)
+-....+|+.++.+|...=+.|+|||- |.|++|..-+.|++|...++.-.. ...|+..|
T Consensus 196 ---------------~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SV 260 (440)
T KOG0302|consen 196 ---------------VKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSV 260 (440)
T ss_pred ---------------ccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccch
Confidence 000112789999999999999999994 489999999999999998875432 22399999
Q ss_pred EEEEEeeCCCCEEEEEEcCCcEEEEeCCCC---cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeee
Q 005352 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSC---HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~ 474 (701)
-.++|+|.....|++|+.||+|+|||++.+ .++....|.+.|+.|.|+..-.+|++|+.||+++|||++.-+..
T Consensus 261 EDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~--- 337 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG--- 337 (440)
T ss_pred hhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC---
Confidence 999999988899999999999999999988 56667789999999999998889999999999999999975543
Q ss_pred eEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc------------------ceeeecccCCCCeEEEE
Q 005352 475 EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------------------IGKYKGLRRSGNQLSAC 536 (701)
Q Consensus 475 ~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~------------------~~~~~~~~~~~~v~~l~ 536 (701)
......+.|..+|+++.|+|.+...|++++.|.+|.|||+.-. .+.+..+.....+..+.
T Consensus 338 --~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~Kevh 415 (440)
T KOG0302|consen 338 --QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVH 415 (440)
T ss_pred --CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhhe
Confidence 1112245577899999999999999999999999999997411 11222222455677888
Q ss_pred EecCC-CEEEEEeCCCcEEEE
Q 005352 537 FTSDG-KHIVSAGEDSNVYMW 556 (701)
Q Consensus 537 ~s~dg-~~l~sgs~Dg~I~iW 556 (701)
|++.- .+|++.+.|| +.||
T Consensus 416 WH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 416 WHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred eccCCCCeEEEecccc-eeEE
Confidence 98854 5788888888 4444
No 137
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4.6e-21 Score=190.27 Aligned_cols=205 Identities=21% Similarity=0.297 Sum_probs=166.0
Q ss_pred EcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 350 FHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
-.+|++.|.+|+|+..- .|++||.|.+|++||+.++++..++. |.+.|.+++|+|....+|++|+.|++|.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 35799999999998875 99999999999999999999999998 8899999999998899999999999999999995
Q ss_pred Cc-EEEEecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCe-eeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 427 CH-VVDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNH-LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 427 ~~-~~~~~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
.. .-......+.|-.++|.|.. ..+++++.||+|+-+|++... ... ..+.|...|.++++++..+.+++
T Consensus 319 ~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw--------t~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 319 PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW--------TLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee--------EEEeccCCcceEEecCCCCccee
Confidence 32 22344567789999999954 578888999999999999864 221 24557789999999998999999
Q ss_pred EEECCCcEEEEeCCccceeeec--ccCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCC
Q 005352 504 VSCADSQVRILQGPNVIGKYKG--LRRSGNQLSACFTSDG-KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~~~~~--~~~~~~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+++.|+.|++|++......... ...-+...|.++.|+- -+++.|+..+.++|||+.+..
T Consensus 391 t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred eccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 9999999999998643322211 1122345666777765 456778888899999998876
No 138
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.4e-20 Score=177.10 Aligned_cols=292 Identities=15% Similarity=0.211 Sum_probs=211.3
Q ss_pred ecccCcceeeecC---ccccccccccceEEEEEccCcc-chhhhcc-------cCceeccCCCcEEEEEEcc-CCCEEEE
Q 005352 200 VDKQGEGERVRLN---EEDAMFCSKVQRVKVYHCKKRS-KELSALY-------KGQEIQAHDGSILTMKFSP-DGQYLAS 267 (701)
Q Consensus 200 ~~~~~~~~~~~~~---~~~~~~~~~d~~v~vw~~~~~~-~~~~~~~-------~~~~l~~H~~~I~~l~fsp-dg~~Las 267 (701)
-.|.+.+++++.+ +.+++.|+.|+.|.|||++... .+...+. ..+.-.+|+-.|.++.|-| |.-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 3567788877654 4678889999999999996543 1211111 1223357888999999999 5557888
Q ss_pred EeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCe
Q 005352 268 AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPL 347 (701)
Q Consensus 268 gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (701)
++-|.+++|||..+.+....|+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~---------------------------------------------------------- 141 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK---------------------------------------------------------- 141 (397)
T ss_pred ccccceEEEeecccceeeEEee----------------------------------------------------------
Confidence 9999999999998876433332
Q ss_pred EEEcCCccCeEEEEEecC---C-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 348 HEFHGHSGEILDLSWSKN---N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~---~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
-.+.|..-+|+|- . ++++|..+-.|++-|+.+|.+..++. |.+.|.++.|+|..+-.|++|+.||.|++|
T Consensus 142 -----me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlW 216 (397)
T KOG4283|consen 142 -----MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLW 216 (397)
T ss_pred -----cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEE
Confidence 2234555566663 2 78888899999999999999999987 999999999999777789999999999999
Q ss_pred eCCCCc-EE--------------E-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCC
Q 005352 423 AVLSCH-VV--------------D-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486 (701)
Q Consensus 423 d~~~~~-~~--------------~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 486 (701)
|++... +. + -..|.+.+..++|..++.++++.+.|..+++|+...+...+............+
T Consensus 217 DiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~- 295 (397)
T KOG4283|consen 217 DIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTS- 295 (397)
T ss_pred EeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccccccc-
Confidence 997531 11 1 234667899999999999999999999999999988765432211111111111
Q ss_pred CCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
..+. +. +- +...++---.++.+.++.+-.....-....|...+.+..+.|+-+...+|..|+.|+.|-.
T Consensus 296 ~~~~-~~-~~-~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 296 FAVH-IQ-SM-DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ceEE-Ee-ec-ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 1111 22 11 2334444444577777777655554444457788999999999999999999999999987
No 139
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.5e-21 Score=205.54 Aligned_cols=234 Identities=18% Similarity=0.297 Sum_probs=185.2
Q ss_pred ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeee
Q 005352 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEV 288 (701)
Q Consensus 210 ~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~ 288 (701)
....+.+++++..|.|.+||+.+...+.. .+.+..|+..|.++.|++. ..+|+|||.||+|++||+...+
T Consensus 97 ~~~~NlIAT~s~nG~i~vWdlnk~~rnk~----l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~----- 167 (839)
T KOG0269|consen 97 QLYSNLIATCSTNGVISVWDLNKSIRNKL----LTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK----- 167 (839)
T ss_pred cchhhhheeecCCCcEEEEecCccccchh----hhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-----
Confidence 34567788899999999999987322111 1245669999999999985 5689999999999999998753
Q ss_pred cCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--
Q 005352 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-- 366 (701)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-- 366 (701)
...++.+....|.+++|+|..
T Consensus 168 ---------------------------------------------------------S~~t~~~nSESiRDV~fsp~~~~ 190 (839)
T KOG0269|consen 168 ---------------------------------------------------------SKSTFRSNSESIRDVKFSPGYGN 190 (839)
T ss_pred ---------------------------------------------------------ccccccccchhhhceeeccCCCc
Confidence 234455677889999999965
Q ss_pred eEEEEECCCcEEEEECCCC-eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE--EEEecCCCcEEEE
Q 005352 367 YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAV 442 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~-~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~i~~i 442 (701)
+|+++...|.+++||++.. ++...+. |.++|.|+.|+| +..+||+|+.|+.|+|||+.+.+. +..+....++..+
T Consensus 191 ~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rV 269 (839)
T KOG0269|consen 191 KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRV 269 (839)
T ss_pred eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeee
Confidence 9999999999999999875 4555554 999999999999 999999999999999999986653 3556667899999
Q ss_pred EEeeCCCe-EEEEe--cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 443 CYRPDGQG-GIVGS--MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 443 ~~sp~g~~-l~~gs--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
.|-|..++ |++++ .|-.|++||++...... .....|...++.++|-..+...+++++.|+.|..-..+
T Consensus 270 kWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~-------~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 270 KWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY-------ATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred eeccCccchhhhhhccccceEEEEeeccccccc-------eeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 99997765 44443 37789999998765432 12345667889999988778899999999998765444
No 140
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=9.2e-21 Score=188.16 Aligned_cols=243 Identities=16% Similarity=0.200 Sum_probs=191.3
Q ss_pred CccccccccccceEEEEEccCccchhhhccc--------------CceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEE
Q 005352 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYK--------------GQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRL 276 (701)
Q Consensus 212 ~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~--------------~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~i 276 (701)
.++++++|+.+..|.|||++-...-+..+.. ...-++|+..|.+|.|+.+ ...|||||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3467888999999999998754433222221 1223579999999999876 457999999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
||+.+++ +...+..|.+.
T Consensus 271 WD~~~g~--------------------------------------------------------------p~~s~~~~~k~ 288 (463)
T KOG0270|consen 271 WDVDTGK--------------------------------------------------------------PKSSITHHGKK 288 (463)
T ss_pred EEcCCCC--------------------------------------------------------------cceehhhcCCc
Confidence 9999985 44455678999
Q ss_pred eEEEEEecCC--eEEEEECCCcEEEEECCCC-eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC-cEE-E
Q 005352 357 ILDLSWSKNN--YLLSASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVV-D 431 (701)
Q Consensus 357 I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~-~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~-~~~-~ 431 (701)
|.++.|+|.. .|++|+.|++|.+.|.+.. ..-..++..+.|-.++|+|.....|+++..||+|+-+|+|.. +.+ .
T Consensus 289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt 368 (463)
T KOG0270|consen 289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT 368 (463)
T ss_pred eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE
Confidence 9999999987 9999999999999999843 333445678899999999988899999999999999999976 444 6
Q ss_pred EecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc
Q 005352 432 WVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (701)
Q Consensus 432 ~~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~ 510 (701)
...|.+.|.++++++.- .++++++.++.|++|++.......... +.....+..|++++|.....++.|+..+.
T Consensus 369 ~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~------~~~~~~rl~c~~~~~~~a~~la~GG~k~~ 442 (463)
T KOG0270|consen 369 LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE------HSFKLGRLHCFALDPDVAFTLAFGGEKAV 442 (463)
T ss_pred EEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc------ccccccceeecccCCCcceEEEecCccce
Confidence 67899999999999854 468889999999999998655432111 11122447888999988888999999999
Q ss_pred EEEEeCCcccee
Q 005352 511 VRILQGPNVIGK 522 (701)
Q Consensus 511 I~iwd~~~~~~~ 522 (701)
++|||+.+....
T Consensus 443 ~~vwd~~~~~~V 454 (463)
T KOG0270|consen 443 LRVWDIFTNSPV 454 (463)
T ss_pred EEEeecccChhH
Confidence 999998754433
No 141
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.4e-19 Score=194.42 Aligned_cols=268 Identities=15% Similarity=0.208 Sum_probs=208.7
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.++..+++.+++++.|+.|++|+......+.. .+.-|...|.+++- ++.+|++|+.+++|.+|.+.+++.-
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~------ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~- 89 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE------TIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEED- 89 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCc------hhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCcc-
Confidence 35566677888999999999998654422221 22237778888876 4559999999999999999876411
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
..+.-.+-++.+++++-+|
T Consensus 90 -------------------------------------------------------------~iL~Rftlp~r~~~v~g~g 108 (933)
T KOG1274|consen 90 -------------------------------------------------------------TILARFTLPIRDLAVSGSG 108 (933)
T ss_pred -------------------------------------------------------------ceeeeeeccceEEEEecCC
Confidence 0112234578999999999
Q ss_pred -eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---------C
Q 005352 367 -YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---------I 435 (701)
Q Consensus 367 -~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---------~ 435 (701)
+++.||.|-.|++-++........+. |..+|.++.|+| .+++||+.+.||.|+|||+.++.+..... .
T Consensus 109 ~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~ 187 (933)
T KOG1274|consen 109 KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFIL 187 (933)
T ss_pred cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccc
Confidence 99999999999999998887777765 999999999999 99999999999999999999887653322 1
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...+..++|+|+|..+++...|+.|++|+..+......... ..+...+..++|+| .|.+|++++.||.|.|||
T Consensus 188 s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~------~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 188 SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD------KLSSSKFSDLQWSP-NGKYIAASTLDGQILVWN 260 (933)
T ss_pred cceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc------cccccceEEEEEcC-CCcEEeeeccCCcEEEEe
Confidence 34578899999999999999999999999988776543221 22224499999999 699999999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
..+... +.....|.+++|.|++.-|-.-...|...+|
T Consensus 261 v~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 261 VDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 987222 4456789999999998866555555555554
No 142
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=4.4e-19 Score=183.62 Aligned_cols=244 Identities=15% Similarity=0.130 Sum_probs=171.5
Q ss_pred eEEEEEecCC-eE-EEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEE-EEcCCcEEEEeCCCCcEEEEe
Q 005352 357 ILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS-GSIDGKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 357 I~~l~~s~~~-~l-~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~s-gs~dg~v~iwd~~~~~~~~~~ 433 (701)
+.+++|+|++ .+ ++++.++.|++||+.+++.+..+.....+..++|+| +++.+++ +..++.|++||+.+.+.+...
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~ 111 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEI 111 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence 5679999998 55 567789999999999998887776444567889999 7776654 456899999999998877666
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCC-cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE-ECCCcE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMG-DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQV 511 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~-s~dg~I 511 (701)
.....+..++|+|+|+.++++..++ .+.+||..+....... . ....+..+.|+| ++..++++ ..++.|
T Consensus 112 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~--~-------~~~~~~~~~~s~-dg~~l~~~~~~~~~v 181 (300)
T TIGR03866 112 PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV--L-------VDQRPRFAEFTA-DGKELWVSSEIGGTV 181 (300)
T ss_pred eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE--E-------cCCCccEEEECC-CCCEEEEEcCCCCEE
Confidence 6556678999999999999988765 4677898776543211 0 112356789999 56666544 469999
Q ss_pred EEEeCCccceee--eccc-----CCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCCCCCccccccccccccccCCce
Q 005352 512 RILQGPNVIGKY--KGLR-----RSGNQLSACFTSDGKHIVSA-GEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNAS 583 (701)
Q Consensus 512 ~iwd~~~~~~~~--~~~~-----~~~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (701)
++||..+..... .... .......++|+|++++++.+ +.++.|.+||+.+++... ..
T Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~--------~~-------- 245 (300)
T TIGR03866 182 SVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD--------YL-------- 245 (300)
T ss_pred EEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE--------EE--------
Confidence 999998653322 1110 11124568899999986554 556789999987665210 00
Q ss_pred EEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccc-cCCCCcccCCCCccCCCCcccccc
Q 005352 584 IAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVF-ESFPKGCATWPEEKLPALSQLSSA 652 (701)
Q Consensus 584 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~-~s~d~~~~~W~~~~~~~~~~~~~~ 652 (701)
.....+..+.|+|+ +..+++ .+.++.+++|+.+....+.++...
T Consensus 246 ---------------------~~~~~~~~~~~~~~----g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 246 ---------------------LVGQRVWQLAFTPD----EKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred ---------------------EeCCCcceEEECCC----CCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 00123445678887 555555 456899999999998887776444
No 143
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.4e-19 Score=171.75 Aligned_cols=259 Identities=19% Similarity=0.235 Sum_probs=189.0
Q ss_pred cccCcceee--ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc--CCCEEEEEeCCCcEEE
Q 005352 201 DKQGEGERV--RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRL 276 (701)
Q Consensus 201 ~~~~~~~~~--~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~i 276 (701)
+|+.-++++ .+.+.++++|+.|++|+||+.++... ........++|.+.|+.+.|.+ -|+.+|+++.|+++.|
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~---~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG---TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC---ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 344445555 45678999999999999999754333 3334456789999999999965 4999999999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
|.-.... ...+.. . -....++......
T Consensus 88 WEE~~~~----~~~~~~---------------------------------------------~----Wv~~ttl~Dsrss 114 (361)
T KOG2445|consen 88 WEEQEKS----EEAHGR---------------------------------------------R----WVRRTTLVDSRSS 114 (361)
T ss_pred eeecccc----cccccc---------------------------------------------e----eEEEEEeecCCcc
Confidence 9853211 000000 0 0234556667889
Q ss_pred eEEEEEecCC---eEEEEECCCcEEEEECCCCe------eeeeec--------CCCCeEEEEEeeC--CCCEEEEEEcC-
Q 005352 357 ILDLSWSKNN---YLLSASIDKTVRLWRVGNDH------CLRVFP--------HSNYVTCVHFNPV--DDNYFISGSID- 416 (701)
Q Consensus 357 I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~~------~~~~~~--------h~~~V~~l~f~p~--~~~~l~sgs~d- 416 (701)
|++++|.|.. .|++++.||+||||+.-.-- ....++ +..+..|+.|+|. ...+|+.|+.+
T Consensus 115 V~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~ 194 (361)
T KOG2445|consen 115 VTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDED 194 (361)
T ss_pred eeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccC
Confidence 9999999975 89999999999999865432 222222 5677889999982 24678888755
Q ss_pred ----CcEEEEeCCCCc-----EEEEecCCCcEEEEEEeeC----CCeEEEEecCCcEEEEECCCCe------------ee
Q 005352 417 ----GKVRIWAVLSCH-----VVDWVDIRQIVTAVCYRPD----GQGGIVGSMMGDCRFYNVSDNH------------LE 471 (701)
Q Consensus 417 ----g~v~iwd~~~~~-----~~~~~~~~~~i~~i~~sp~----g~~l~~gs~dg~v~i~d~~~~~------------~~ 471 (701)
+.++||...... +-.+.++..+|+.|+|.|+ -..|++++.|| |+||.+.... ..
T Consensus 195 a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~ 273 (361)
T KOG2445|consen 195 APHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLM 273 (361)
T ss_pred CccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCc
Confidence 478898765432 2245688999999999995 35799999999 9999997421 22
Q ss_pred eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
...++........|...+..+.|+- .+..|.+.+.||.||+|...
T Consensus 274 ~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 274 TDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhhh
Confidence 2333444445667888999999998 78999999999999999753
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.8e-21 Score=203.35 Aligned_cols=235 Identities=22% Similarity=0.397 Sum_probs=202.2
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
++.+|...|.++..-..++.+++||.|..+-+|.+....
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~----------------------------------------- 61 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN----------------------------------------- 61 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-----------------------------------------
Confidence 455699999999987788999999999999999986542
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f 402 (701)
.+..|.+|..+|.+|.|++.. +|++|+.+|+|++||++..+.++++. |...+..++|
T Consensus 62 ---------------------~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f 120 (825)
T KOG0267|consen 62 ---------------------AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDF 120 (825)
T ss_pred ---------------------hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeee
Confidence 233478999999999999988 99999999999999999999888775 9999999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
+| -+.++++|+.|+.+++||++..-+. ....|...+..+.|+|+|++++.|+.|..+++||+..+++..+
T Consensus 121 ~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e-------- 191 (825)
T KOG0267|consen 121 HP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE-------- 191 (825)
T ss_pred cc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc--------
Confidence 99 8899999999999999999965555 4445778899999999999999999999999999988876432
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCC
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDS 551 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg 551 (701)
...|...+..+.|+| ..-+++.|+.|.+|++||+++....-.+......|.+.+|+|++..+++|....
T Consensus 192 f~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 192 FKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred cccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 345667888899999 678889999999999999998776666666678999999999999998886554
No 145
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=5e-20 Score=179.15 Aligned_cols=237 Identities=18% Similarity=0.244 Sum_probs=176.2
Q ss_pred cccccccceEEEEEccCccch---------hhhcccCceeccCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecCeee
Q 005352 216 AMFCSKVQRVKVYHCKKRSKE---------LSALYKGQEIQAHDGSILTMKFSPDG-QYLASAGDDGVVRLWQVVEDERL 285 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~---------~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iWd~~~~~~~ 285 (701)
.++-+..|.|+||++...-.. .........+.+|.+.=++|+|||-. ..|+||..-+.|++|...++.-.
T Consensus 168 ~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~ 247 (440)
T KOG0302|consen 168 CASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK 247 (440)
T ss_pred eeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCcee
Confidence 344677899999997532211 12223334678999999999999932 25889888889999998876421
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
. -...|.+|+..|-+|+|||.
T Consensus 248 v-----------------------------------------------------------d~~Pf~gH~~SVEDLqWSpt 268 (440)
T KOG0302|consen 248 V-----------------------------------------------------------DQRPFTGHTKSVEDLQWSPT 268 (440)
T ss_pred e-----------------------------------------------------------cCccccccccchhhhccCCc
Confidence 0 11234679999999999997
Q ss_pred C--eEEEEECCCcEEEEECCCC---eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc---EE-EEecCC
Q 005352 366 N--YLLSASIDKTVRLWRVGND---HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH---VV-DWVDIR 436 (701)
Q Consensus 366 ~--~l~s~s~dg~I~iWd~~~~---~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~---~~-~~~~~~ 436 (701)
. .|++||.||+|+|||++.+ .++.+-.|.+.|+.|.|+. ...+|++|+.||+++|||++.-+ .+ .+..|.
T Consensus 269 E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk 347 (440)
T KOG0302|consen 269 EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK 347 (440)
T ss_pred cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEecc
Confidence 5 9999999999999999998 5666656999999999998 77799999999999999998643 33 667799
Q ss_pred CcEEEEEEeeC-CCeEEEEecCCcEEEEECCCCee-----------eeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 437 QIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHL-----------ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 437 ~~i~~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
.+|++|.|+|. ...|++++.|..|.+||+....- ....+..+.- .......+..+.|+++.+.++++
T Consensus 348 ~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF-VHqGQke~KevhWH~QiPG~lvs 426 (440)
T KOG0302|consen 348 APITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF-VHQGQKEVKEVHWHRQIPGLLVS 426 (440)
T ss_pred CCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEE-EecchhHhhhheeccCCCCeEEE
Confidence 99999999994 56788889999999999964321 0000000100 01123457788999988899999
Q ss_pred EECCCcEEE
Q 005352 505 SCADSQVRI 513 (701)
Q Consensus 505 ~s~dg~I~i 513 (701)
.+.||.-.+
T Consensus 427 Ta~dGfnVf 435 (440)
T KOG0302|consen 427 TAIDGFNVF 435 (440)
T ss_pred ecccceeEE
Confidence 988875433
No 146
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5e-20 Score=184.11 Aligned_cols=246 Identities=18% Similarity=0.246 Sum_probs=187.3
Q ss_pred cCcceeee--cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEee
Q 005352 203 QGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (701)
Q Consensus 203 ~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 280 (701)
++.+.++. +.+.+++.|+..+.+.+|.+.... ....+.+|=..|+|+.|+-||.+|+|||.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~-------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGI-------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEecccc-------HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 44455544 344455556699999999765442 223467799999999999999999999999999999985
Q ss_pred cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEE
Q 005352 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (701)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 360 (701)
..-. .+. +..-+|++.|..|+-+|+++
T Consensus 154 ~lv~-----------------a~~------------------------------------~~~~~p~~~f~~HtlsITDl 180 (476)
T KOG0646|consen 154 DLVS-----------------ADN------------------------------------DHSVKPLHIFSDHTLSITDL 180 (476)
T ss_pred eecc-----------------ccc------------------------------------CCCccceeeeccCcceeEEE
Confidence 4210 000 00127899999999999999
Q ss_pred EEecCC---eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc---------
Q 005352 361 SWSKNN---YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--------- 428 (701)
Q Consensus 361 ~~s~~~---~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~--------- 428 (701)
...+.+ +|+|+|.|.++++||+..+..+..+..+..+.+++..| .+..++.|+.+|.|.+.++..-.
T Consensus 181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k 259 (476)
T KOG0646|consen 181 QIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQK 259 (476)
T ss_pred EecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCccccccccc
Confidence 988765 99999999999999999999999999999999999999 89999999999999988774321
Q ss_pred --------EEEEecCCC--cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC
Q 005352 429 --------VVDWVDIRQ--IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (701)
Q Consensus 429 --------~~~~~~~~~--~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~ 498 (701)
.....+|.. .|+|++++-||..|++|+.||.|++||+...++.... ....++|+.+++.|-.
T Consensus 260 ~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl--------~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 260 GRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL--------QTSKGPVTNLQINPLE 331 (476)
T ss_pred ccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH--------hhhccccceeEeeccc
Confidence 223456666 8999999999999999999999999999877654221 1144778889887743
Q ss_pred CCEEEEEECCCcEEEEeCC
Q 005352 499 SSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 499 ~~~l~~~s~dg~I~iwd~~ 517 (701)
...++.-.....+..|+.+
T Consensus 332 ~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 332 RGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred cceecccccCccCCchHhh
Confidence 3344333334444444443
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2e-19 Score=170.98 Aligned_cols=286 Identities=16% Similarity=0.192 Sum_probs=203.6
Q ss_pred CcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCe
Q 005352 204 GEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (701)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~ 283 (701)
.+...++..+.++++|..+|.|.|||+.... ..+.+.+|..+|++++||+||+.|+|++.|..|.+||+..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-------hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 4456778888999999999999999876443 345678899999999999999999999999999999999887
Q ss_pred eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe
Q 005352 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (701)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 363 (701)
.++++. ...+|+.+.|+
T Consensus 99 ~l~rir---------------------------------------------------------------f~spv~~~q~h 115 (405)
T KOG1273|consen 99 PLKRIR---------------------------------------------------------------FDSPVWGAQWH 115 (405)
T ss_pred ceeEEE---------------------------------------------------------------ccCccceeeec
Confidence 555443 23567777888
Q ss_pred cCC--eEEEEECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC
Q 005352 364 KNN--YLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR 436 (701)
Q Consensus 364 ~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 436 (701)
|.. .+++.-.+..-.+-++...+....-. .+....+..|.+ .++++++|...|.+.++|..+.+++......
T Consensus 116 p~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rit 194 (405)
T KOG1273|consen 116 PRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRIT 194 (405)
T ss_pred cccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecchheeeeeeeec
Confidence 755 44444455545555554422111111 112233346787 8999999999999999999999888655433
Q ss_pred --CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee-eeeeEEeecc--cCCCCCCeeEEEEecCCCCEEEEEEC-CCc
Q 005352 437 --QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE-LDAEICVHSK--KKAPCKRITGFQFLPQDSSKVMVSCA-DSQ 510 (701)
Q Consensus 437 --~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~-~~~~~~~~~~--~~~~~~~i~~l~~~p~~~~~l~~~s~-dg~ 510 (701)
..|..+.++-.|+.|++.+.|..|+.|+++.-... .........+ ..-....-.+++|+. ++.++++++. ...
T Consensus 195 s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHa 273 (405)
T KOG1273|consen 195 SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHA 273 (405)
T ss_pred hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEecccccee
Confidence 57899999999999999999999999998732110 0000000000 001123456788888 6777777664 678
Q ss_pred EEEEeCCccceeeecccCC-CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 511 VRILQGPNVIGKYKGLRRS-GNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 511 I~iwd~~~~~~~~~~~~~~-~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++||........-..++.. .....+.|+|-...|++- ..|.|+||.....+
T Consensus 274 LYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 274 LYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred EEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 9999976544443343344 567889999998888887 68999999987665
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.5e-19 Score=182.54 Aligned_cols=289 Identities=18% Similarity=0.197 Sum_probs=204.0
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~ 425 (701)
-..+.||++.|.+|...|.| .|++|+.||+|+||.+.++.|++++...+.|.||+|+|.....++++..+..+.|-+..
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 45678999999999999999 99999999999999999999999999999999999999444444444444445444321
Q ss_pred CC--------------------------------------cEEEEecCCCcEEEEEEeeCCCeEEEEecC---CcEEEEE
Q 005352 426 SC--------------------------------------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---GDCRFYN 464 (701)
Q Consensus 426 ~~--------------------------------------~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d---g~v~i~d 464 (701)
-| .+...+.|...|..+.|+..|.+|++...+ ..|.|++
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 10 122345677889999999999999997653 4588888
Q ss_pred CCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEE
Q 005352 465 VSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHI 544 (701)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 544 (701)
+.....+. ......+.+.++.|+|. ..+|++++ ...|+|||+......-+.......|..++++|.|..|
T Consensus 553 LSK~~sQ~--------PF~kskG~vq~v~FHPs-~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 553 LSKRKSQS--------PFRKSKGLVQRVKFHPS-KPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred cccccccC--------chhhcCCceeEEEecCC-CceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 87654321 12223466899999994 44554444 4689999998766555666677889999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCc
Q 005352 545 VSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQ 624 (701)
Q Consensus 545 ~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~ 624 (701)
+.|+.|+.+..+|++-...+.. ....+...++.++|.+. -.
T Consensus 623 i~gs~d~k~~WfDldlsskPyk-----------------------------------~lr~H~~avr~Va~H~r----yP 663 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYK-----------------------------------TLRLHEKAVRSVAFHKR----YP 663 (733)
T ss_pred EEecCCCeeEEEEcccCcchhH-----------------------------------Hhhhhhhhhhhhhhccc----cc
Confidence 9999999999999876643210 11112334555666664 34
Q ss_pred cccccCCCCcccCCCCc------cCC---CCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEE
Q 005352 625 EYVFESFPKGCATWPEE------KLP---ALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSF 692 (701)
Q Consensus 625 ~~~~~s~d~~~~~W~~~------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw 692 (701)
.|.+++.|+++.++-.. +.+ +++.+.+|...+ ...|..+.+.+. -..|+|||.||+||+|
T Consensus 664 Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~-------~~gVLd~~wHP~-qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 664 LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN-------DLGVLDTIWHPR-QPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec-------ccceEeecccCC-CceEEecCCCceEEee
Confidence 56677777887543321 111 245565662211 112444446666 7889999999999998
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=1.9e-19 Score=179.42 Aligned_cols=299 Identities=17% Similarity=0.253 Sum_probs=213.2
Q ss_pred CeEEEcCCccCeEEEEEecCC---eEEEEECCCcEEEEECCCCe----eeeee-cCCCCeEEEEEeeCCCCEEEEEEcCC
Q 005352 346 PLHEFHGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVGNDH----CLRVF-PHSNYVTCVHFNPVDDNYFISGSIDG 417 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~~----~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg 417 (701)
+..+.+-|...|++++|+|.. .+++|..-|.|-+||+.+.+ -+..+ .|..+|.+|.|+|.+...+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 445667789999999999975 88899999999999996332 22233 39999999999999999999999999
Q ss_pred cEEEEeCCCCcEEEEe---cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 418 KVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 418 ~v~iwd~~~~~~~~~~---~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
+|++-|+.+...-.+. .....+..+.|+.+...++.+..=|...+||++++.-... ....|...|+++++
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~-------~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE-------NLRLHKKKITSVAL 330 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch-------hhhhhhcccceeec
Confidence 9999999876533222 3345677888888888888888888999999998764322 12334568999999
Q ss_pred ecCCCCEEEEEECCCcEEEEeCCcccee----eecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC---CCCCCCcc
Q 005352 495 LPQDSSKVMVSCADSQVRILQGPNVIGK----YKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI---GHEEPAHD 567 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg~I~iwd~~~~~~~----~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~---~~~~~~~~ 567 (701)
+|..+.+|++++.|++.+|||++....+ +....|...|.++.|||.+..|+|.+.|..|+|||.. ..-++.
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~-- 408 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL-- 408 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc--
Confidence 9999999999999999999999854433 3445699999999999998889999999999999974 111111
Q ss_pred ccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCc
Q 005352 568 QAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALS 647 (701)
Q Consensus 568 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~ 647 (701)
..+.+- +.. ...-.+....|.|+ -..++.+...+.|-+++.+....+.
T Consensus 409 -----~~I~Hn----------~~t-------------~RwlT~fKA~W~P~----~~li~vg~~~r~IDv~~~~~~q~v~ 456 (498)
T KOG4328|consen 409 -----GTIPHN----------NRT-------------GRWLTPFKAAWDPD----YNLIVVGRYPRPIDVFDGNGGQMVC 456 (498)
T ss_pred -----ceeecc----------Ccc-------------cccccchhheeCCC----ccEEEEeccCcceeEEcCCCCEEee
Confidence 000000 000 01112334467775 4566677777778888888777555
Q ss_pred cccccccchhhhhhhhhcccccccccCCCcc-EEEEecCCCeEeEEeec
Q 005352 648 QLSSASALHKSQYKFLKSSCLCTTSSHAWGL-VIVTAGWDGRIRSFLNY 695 (701)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ivTgg~DG~Irvw~~~ 695 (701)
.+.... ...|.++-.-|..+. +++-++..|.|.||-+-
T Consensus 457 el~~P~----------~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 457 ELHDPE----------SSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred eccCcc----------ccccccceeecccccceeccCCccceEEEEecC
Confidence 542220 112333322233366 44445677999999764
No 150
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=1.7e-19 Score=177.27 Aligned_cols=302 Identities=20% Similarity=0.283 Sum_probs=206.7
Q ss_pred eeecCcc-ccccccccceEEEEEccCccchh--hhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCee
Q 005352 208 RVRLNEE-DAMFCSKVQRVKVYHCKKRSKEL--SALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (701)
Q Consensus 208 ~~~~~~~-~~~~~~~d~~v~vw~~~~~~~~~--~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~ 284 (701)
.++.+.. .+++|+.|..|+||.+......- ..+.-...|..|...|+++.|+|+|.+||||+.+|.|.+|....-.
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~- 98 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVR- 98 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcC-
Confidence 3444444 77889999999999986544332 1233334678899999999999999999999999999999876411
Q ss_pred eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
+. .... + . .... .. -.....+.+|...|..++|+|
T Consensus 99 ~~-----~~d~-e-------------~---~~~k-------------------e~----w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 99 IF-----DADT-E-------------A---DLNK-------------------EK----WVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred Cc-----cccc-h-------------h---hhCc-------------------cc----eEEEEEecccccchhhhhccC
Confidence 00 0000 0 0 0000 00 023456778999999999999
Q ss_pred CC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec--------
Q 005352 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-------- 434 (701)
Q Consensus 365 ~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-------- 434 (701)
++ ++++++.|..+++||+..++.+..+. |..+|+.++|.| .++++++-+.|...+++.+...+.+....
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~ 212 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKA 212 (434)
T ss_pred CCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecc
Confidence 99 99999999999999999999998887 999999999999 89999999999888888776544332111
Q ss_pred ------------CC----CcEEEEEEeeCCCeEEEEec----CCcE-----EEEECCCCeeeeeeeEEeecccCCCCCCe
Q 005352 435 ------------IR----QIVTAVCYRPDGQGGIVGSM----MGDC-----RFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (701)
Q Consensus 435 ------------~~----~~i~~i~~sp~g~~l~~gs~----dg~v-----~i~d~~~~~~~~~~~~~~~~~~~~~~~~i 489 (701)
|. .-...++|+|+|..+++... .+.+ ++|+-...+.. ... ........
T Consensus 213 ~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP---~~~----lp~~~k~~ 285 (434)
T KOG1009|consen 213 FNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRP---AAR----LPSPKKPA 285 (434)
T ss_pred cCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCc---eee----cCCCCcce
Confidence 11 11456789999999988643 2222 33332211110 001 11112223
Q ss_pred eEEEEec-------CC---------CCEEEEEECCCcEEEEeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 490 TGFQFLP-------QD---------SSKVMVSCADSQVRILQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 490 ~~l~~~p-------~~---------~~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
..+.++| -+ ..++++....+.|+|||.......+.. .-|-..++.++|++||.+|+..|.||.
T Consensus 286 lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGy 365 (434)
T KOG1009|consen 286 LAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGF 365 (434)
T ss_pred EEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCc
Confidence 3333332 00 234445555678999999875554433 237889999999999999999999999
Q ss_pred EEEEeCCCCCC
Q 005352 553 VYMWNCIGHEE 563 (701)
Q Consensus 553 I~iWd~~~~~~ 563 (701)
..+-.++..+.
T Consensus 366 CS~vtfe~~el 376 (434)
T KOG1009|consen 366 CSLVTFEPWEL 376 (434)
T ss_pred eEEEEEcchhc
Confidence 99988887764
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.6e-19 Score=180.95 Aligned_cols=276 Identities=17% Similarity=0.228 Sum_probs=203.2
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCeeeeeecCCCCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 294 (701)
+.+++....+++||+....... .+..+. ..-.|.+++|+.... .+|+.+.|..|++|.-... +.++
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~--~~~~~t---~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~V------ 71 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKS--EYVHQT---AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPEV------ 71 (673)
T ss_pred eeeeccCCceEEeecccccCcc--ccccCC---CCCcceeeeccccceEEEeecCCceeEEEecccCC--CCcc------
Confidence 5567778899999986433221 111110 122489999987663 2445566889999974321 1111
Q ss_pred CceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC
Q 005352 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI 373 (701)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~ 373 (701)
..+....|. .-.|++..... |+++|+.
T Consensus 72 --------------------------------------------------p~~~k~~gd--~~~Cv~~~s~S~y~~sgG~ 99 (673)
T KOG4378|consen 72 --------------------------------------------------PRVRKLTGD--NAFCVACASQSLYEISGGQ 99 (673)
T ss_pred --------------------------------------------------ceeeccccc--hHHHHhhhhcceeeeccCc
Confidence 011111222 23344444445 9999999
Q ss_pred CCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC--CcEEEEEEeeCCCe
Q 005352 374 DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR--QIVTAVCYRPDGQG 450 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~i~~i~~sp~g~~ 450 (701)
.++|+|||++...+.+.++ |...|+++.++- .+.+|++++..|.|.|..+.+++....+.+. ..|.-+.|+|..+.
T Consensus 100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF 178 (673)
T ss_pred CceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccce
Confidence 9999999999777777666 999999999998 8899999999999999999998877655554 45668999997664
Q ss_pred -EEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCC
Q 005352 451 -GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRS 529 (701)
Q Consensus 451 -l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 529 (701)
|.+++.+|.|.+||+...... ......|..+..+++|+|.+..+|++.+.|..|.+||.......- .....
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~-------~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~-~l~y~ 250 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPI-------FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD-RLTYS 250 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcc-------cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc-eeeec
Confidence 556889999999999876543 223456778889999999999999999999999999998433222 22356
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 005352 530 GNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPA 565 (701)
Q Consensus 530 ~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~ 565 (701)
.+...++|.++|.+|+.|+..|.|+.||++..+.|.
T Consensus 251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred CCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 788999999999999999999999999999887654
No 152
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=6.6e-21 Score=199.11 Aligned_cols=219 Identities=19% Similarity=0.375 Sum_probs=189.4
Q ss_pred cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecC
Q 005352 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (701)
Q Consensus 211 ~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~ 290 (701)
-....++.|+.+..+.+|.+.+..... .|.+|..+|.+|.|+++..+|++|+.+|+|++||+++.
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~-------S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA-------- 102 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAIT-------SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA-------- 102 (825)
T ss_pred ccceeeccCCCceeeccccccCCchhh-------eeeccCCcceeeecCcchhhhcccccCCceeeeehhhh--------
Confidence 344567778999999999877655443 37889999999999999999999999999999999876
Q ss_pred CCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE
Q 005352 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL 369 (701)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~ 369 (701)
+.++++.||...+..+.|+|-+ +++
T Consensus 103 ------------------------------------------------------k~vrtLtgh~~~~~sv~f~P~~~~~a 128 (825)
T KOG0267|consen 103 ------------------------------------------------------KIVRTLTGHLLNITSVDFHPYGEFFA 128 (825)
T ss_pred ------------------------------------------------------hhhhhhhccccCcceeeeccceEEec
Confidence 4456788999999999999999 899
Q ss_pred EEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-cCCCcEEEEEEeeC
Q 005352 370 SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPD 447 (701)
Q Consensus 370 s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~ 447 (701)
+|+.|+.+++||++...|...++ |...|.++.|+| ++.++++|+.|.+++|||+..+++...+ .|.+.+.++.|+|.
T Consensus 129 ~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 129 SGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL 207 (825)
T ss_pred cccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCch
Confidence 99999999999999999999998 889999999999 9999999999999999999999988555 48999999999999
Q ss_pred CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 448 GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 448 g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
.-.++.|+.|+++++||+++-..+ .........|.+..|+| ++..+++|...
T Consensus 208 e~Lla~Gs~d~tv~f~dletfe~I--------~s~~~~~~~v~~~~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 208 EVLLAPGSSDRTVRFWDLETFEVI--------SSGKPETDGVRSLAFNP-DGKIVLSGEQI 259 (825)
T ss_pred hhhhccCCCCceeeeeccceeEEe--------eccCCccCCceeeeecC-CceeeecCchh
Confidence 999999999999999999875433 22333467899999999 67777776554
No 153
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.7e-19 Score=176.67 Aligned_cols=275 Identities=15% Similarity=0.215 Sum_probs=199.9
Q ss_pred ccCeEEEEEecCC-eEEEEECCCcEEEEECCCC--eeeeeec-CCCCeEEEEEeeCCCC-EEEEEEcCCcEEEEeCCCCc
Q 005352 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFP-HSNYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLSCH 428 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~--~~~~~~~-h~~~V~~l~f~p~~~~-~l~sgs~dg~v~iwd~~~~~ 428 (701)
.+.|+++.|+|.. .|++++.|++++||.+... ..++.+. ...+|.+.+|.| ++. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccceEEEEeeccccc
Confidence 4689999999998 9999999999999988644 3344443 578999999999 777 89999999999999999987
Q ss_pred EEEEec---C-CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 429 VVDWVD---I-RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 429 ~~~~~~---~-~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
+..+.. + ...+....++|++++|+..+..|.|.+....++.+.....+ .+.|..++|+. ++..|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki---------eG~v~~~~fsS-dsk~l~~ 361 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI---------EGVVSDFTFSS-DSKELLA 361 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee---------ccEEeeEEEec-CCcEEEE
Confidence 764432 2 23577888999999999999999999999988876544332 26689999998 7899999
Q ss_pred EECCCcEEEEeCCccceeeecccCCCC--eEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCc
Q 005352 505 SCADSQVRILQGPNVIGKYKGLRRSGN--QLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNA 582 (701)
Q Consensus 505 ~s~dg~I~iwd~~~~~~~~~~~~~~~~--v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (701)
++.+|.|.+||++......... ..+. -+++|.+++|.|||+|+..|.|.|||.++--. ...++++..+..+.
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~-D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~--s~~PkPik~~dNLt--- 435 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFV-DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA--STNPKPIKTVDNLT--- 435 (514)
T ss_pred EcCCceEEEEecCCcceEEEEe-ecCccceeeeeecCCCceEEeccCcceEEEeccchhhc--cCCCCchhhhhhhh---
Confidence 9999999999999765554443 2233 36788889999999999999999999765431 11222222221111
Q ss_pred eEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccC-------------CCCcccCCCCccCCCCccc
Q 005352 583 SIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFES-------------FPKGCATWPEEKLPALSQL 649 (701)
Q Consensus 583 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s-------------~d~~~~~W~~~~~~~~~~~ 649 (701)
..+..+.|+|+ ++.++.+| .....+-||....+.
T Consensus 436 -------------------------t~Itsl~Fn~d----~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~v---- 482 (514)
T KOG2055|consen 436 -------------------------TAITSLQFNHD----AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKV---- 482 (514)
T ss_pred -------------------------eeeeeeeeCcc----hhhhhhhhhccccceEEEeccceeeeccCCCCCCcc----
Confidence 12333444443 22222222 122233455432221
Q ss_pred cccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 650 SSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
+.+.|++|++. |-+++-|..+|++++|..
T Consensus 483 ---------------g~vtc~aFSP~-sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 483 ---------------GHVTCMAFSPN-SGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ---------------cceEEEEecCC-CceEEeecCCCceeeEee
Confidence 35789999999 999999999999999974
No 154
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.2e-19 Score=172.95 Aligned_cols=261 Identities=18% Similarity=0.172 Sum_probs=191.0
Q ss_pred cCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 242 KGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 242 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
..+.+.+|.+.|.+|.|+.++++||+||.|..+++|++...-...
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k----------------------------------- 92 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK----------------------------------- 92 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc-----------------------------------
Confidence 335678999999999999999999999999999999987531000
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEc-CCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCC---C
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSN---Y 396 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~---~ 396 (701)
..||+.... .|...|.|++|...+ .+++|..+++|.+.|+++.+.+..+.|.. .
T Consensus 93 ---------------------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~ 151 (609)
T KOG4227|consen 93 ---------------------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGD 151 (609)
T ss_pred ---------------------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccc
Confidence 013443332 466899999998877 99999999999999999999999998765 9
Q ss_pred eEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc----EEEEecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCeee
Q 005352 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 397 V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
|+.+..+| ..+.|++.+.++.|.+||++..+ .+-..........+.|+|.. .+|++.+..+-+.+||.+.....
T Consensus 152 VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~ 230 (609)
T KOG4227|consen 152 VYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP 230 (609)
T ss_pred eeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch
Confidence 99999999 68899999999999999998765 23333456678889999954 57788888899999999876533
Q ss_pred eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc-cceeeecc------cCCCCeEEEEEecCCCEE
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-VIGKYKGL------RRSGNQLSACFTSDGKHI 544 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~-~~~~~~~~------~~~~~v~~l~~s~dg~~l 544 (701)
+...-... ..........+..|+| ++..+++--....-.+||+.. ....++.- -....+.+++|.-|. .+
T Consensus 231 ~~~~~~~~-~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v 307 (609)
T KOG4227|consen 231 VYQRSMFK-GLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TV 307 (609)
T ss_pred HHhhhccc-cCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-ee
Confidence 21110000 0111123346788999 566666655555556677654 23333322 123456788887664 49
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 005352 545 VSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 545 ~sgs~Dg~I~iWd~~~~~ 562 (701)
++|+.+-.|+||.+....
T Consensus 308 ~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 308 ATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred eccCcccceEEEecCCCc
Confidence 999999999999976543
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=5.7e-19 Score=175.96 Aligned_cols=287 Identities=16% Similarity=0.220 Sum_probs=206.6
Q ss_pred eeeecCcc--ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCe
Q 005352 207 ERVRLNEE--DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDE 283 (701)
Q Consensus 207 ~~~~~~~~--~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~ 283 (701)
..+.+... .+++|...|+|-+|+++...++....+ .+..|.++|.+|.|+|. -..+++.+.||+|++-|++.+.
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~---~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i 268 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY---LFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI 268 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceE---EeccCCccccceEecCCChhheeeeccCceeeeeeecchh
Confidence 34444443 456689999999999975555444443 35679999999999995 4578999999999999998763
Q ss_pred eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe
Q 005352 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (701)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 363 (701)
.- .+..+......+..+.|+
T Consensus 269 ~e------------------------------------------------------------~v~s~~~d~~~fs~~d~~ 288 (498)
T KOG4328|consen 269 SE------------------------------------------------------------EVLSLDTDNIWFSSLDFS 288 (498)
T ss_pred hH------------------------------------------------------------HHhhcCccceeeeecccc
Confidence 11 111112233456677787
Q ss_pred cCC-eEEEEECCCcEEEEECCCCee-eeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc-----EEEEecC
Q 005352 364 KNN-YLLSASIDKTVRLWRVGNDHC-LRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-----VVDWVDI 435 (701)
Q Consensus 364 ~~~-~l~s~s~dg~I~iWd~~~~~~-~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-----~~~~~~~ 435 (701)
.+. .++.+..=|...+||++++.. ...+. |...|+.++++|....+|++++.|++++|||++.-. .+....|
T Consensus 289 ~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~H 368 (498)
T KOG4328|consen 289 AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPH 368 (498)
T ss_pred CCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccc
Confidence 776 777788778999999998765 33333 788999999999999999999999999999997532 4677889
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECC---CCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS---DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~---~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
...|.++.|+|.+-.|++.+.|..|+|||.. ...... . ...+......--......|.| +..++++|-.-..|-
T Consensus 369 rrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~-~-~I~Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~ID 445 (498)
T KOG4328|consen 369 RRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL-G-TIPHNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPID 445 (498)
T ss_pred cceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc-c-eeeccCcccccccchhheeCC-CccEEEEeccCccee
Confidence 9999999999988889999999999999984 111110 0 111222222222344567999 789999999999999
Q ss_pred EEeCCccceeeecccCC-CCeEE-EEEecCCCEEEEE-eCCCcEEEEeCC
Q 005352 513 ILQGPNVIGKYKGLRRS-GNQLS-ACFTSDGKHIVSA-GEDSNVYMWNCI 559 (701)
Q Consensus 513 iwd~~~~~~~~~~~~~~-~~v~~-l~~s~dg~~l~sg-s~Dg~I~iWd~~ 559 (701)
|+|..........+... ..|.+ ..|+|-+..+++| +.-|.|+||--+
T Consensus 446 v~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 446 VFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred EEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 99988766555543222 23433 4699988855554 567889998643
No 156
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.3e-17 Score=179.15 Aligned_cols=456 Identities=15% Similarity=0.167 Sum_probs=272.4
Q ss_pred CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCC---CEEEEEeCCCcEEEEEeecCeeeeee
Q 005352 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG---QYLASAGDDGVVRLWQVVEDERLTEV 288 (701)
Q Consensus 212 ~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~Lasgs~Dg~I~iWd~~~~~~~~~~ 288 (701)
++...+++..++.|+||..... .+...+.+|..+++.+.+.|.. .++.+++.||.|++||...+..+..+
T Consensus 26 nD~k~l~~~~~~~V~VyS~~Tg-------~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~ 98 (792)
T KOG1963|consen 26 NDAKFLFLCTGNFVKVYSTATG-------ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF 98 (792)
T ss_pred cCCcEEEEeeCCEEEEEecchH-------hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence 3455566778899999964332 2334678899999999998854 47889999999999999999988887
Q ss_pred cCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeE
Q 005352 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYL 368 (701)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l 368 (701)
..........+. +.....-..+.........+.............+.... ........+..|.. -.+|.+++.+.+
T Consensus 99 ~~~~~v~~~~~~-~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t--~~~~~~d~~~~~~~-~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 99 DNNLPVHALVYK-PAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLAT--FDSAKGDFLKEHQE-PKSIVDNNSGEF 174 (792)
T ss_pred ecCCceeEEEec-hhHhCccceeEeecccceeeeecccccccceeeeEeee--ccccchhhhhhhcC-CccEEEcCCceE
Confidence 655433222221 11111001111111111111111111110000000000 00111222233322 356777888866
Q ss_pred EEEECCCcEEEEECCCCeeeee-----ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-----CcEEEEecCCCc
Q 005352 369 LSASIDKTVRLWRVGNDHCLRV-----FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-----CHVVDWVDIRQI 438 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~~~~~~-----~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-----~~~~~~~~~~~~ 438 (701)
...-.+..+.+|+..++..... ..|...++|.+++| +++++++|..||.|.+|.--. .....+.-|...
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~ 253 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE 253 (792)
T ss_pred EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence 6666677899999887651111 12777799999999 999999999999999995332 123334457889
Q ss_pred EEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
|++++|+++|.+|++|+..|.+.+|.+.+++.++ ......+|..+.++| ++.+.+....|++|.+....+
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf---------LPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF---------LPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCCccc---------ccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccc
Confidence 9999999999999999999999999999987443 222347899999999 788899999999999998754
Q ss_pred cceeeec-----------ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcccccccccccc--ccCCceEE
Q 005352 519 VIGKYKG-----------LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLER--FTTNASIA 585 (701)
Q Consensus 519 ~~~~~~~-----------~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~a 585 (701)
....... .+..+-.+.++++|.-+.++-.+..|.|.+||+-+.......+.-....... .....+++
T Consensus 324 l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ita 403 (792)
T KOG1963|consen 324 LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITA 403 (792)
T ss_pred hhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeee
Confidence 3221111 1134556788999977778888899999999998766422111000000000 00001111
Q ss_pred ecCC--C---------------------CCCCCCCCCCcc-------ccCCCCCCCccccCCCccccCccccccCCCCcc
Q 005352 586 IPWC--G---------------------LKCGNAEKEPQL-------HVSDDDSPENLAFAPARFSLGQEYVFESFPKGC 635 (701)
Q Consensus 586 ~~~~--~---------------------~~~~~~~~~~~~-------~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~ 635 (701)
+... | .++|......+. ...+.......++.+...+ .++++.+.++.+
T Consensus 404 v~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs--~~~vta~~dg~~ 481 (792)
T KOG1963|consen 404 VARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS--VRCVTASVDGDF 481 (792)
T ss_pred ehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc--ceeEEeccCCeE
Confidence 1111 1 012211111110 0112222233344332112 278889999999
Q ss_pred cCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 636 ATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 636 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
++|-+.....+.+.... -.......+++..+..++|+.+ |. +++.+.|+.|-+|+-
T Consensus 482 KiW~~~~~~n~~k~~s~-W~c~~i~sy~k~~i~a~~fs~d-Gs-lla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 482 KIWVFTDDSNIYKKSSN-WTCKAIGSYHKTPITALCFSQD-GS-LLAVSFDDTITIWDY 537 (792)
T ss_pred EEEEEecccccCcCccc-eEEeeeeccccCcccchhhcCC-Cc-EEEEecCCEEEEecC
Confidence 99998554444332110 0011111135667788888888 84 557788899999974
No 157
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.5e-18 Score=169.85 Aligned_cols=266 Identities=20% Similarity=0.257 Sum_probs=188.8
Q ss_pred cCcccccc---ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 211 LNEEDAMF---CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 211 ~~~~~~~~---~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.++.++++ ++..|-..|--+.+..+-- ..+ ..+.||+++|..++|+| +...|||||+|.+|.||++..+....
T Consensus 42 vNPkfiAvi~easgGgaf~ViPl~k~Gr~d-~~~--P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~ 118 (472)
T KOG0303|consen 42 VNPKFVAVIIEASGGGAFLVIPLVKTGRMD-ASY--PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR 118 (472)
T ss_pred cCCceEEEEEecCCCcceeecccccccccC-CCC--CCccCccccccccccCccCCceeecCCCCceEEEEECCCccccc
Confidence 34455444 3444455555444333211 111 23678999999999999 45689999999999999997764322
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
.+ ..|+..+.||...|--++|+|.-
T Consensus 119 ~l-------------------------------------------------------tepvv~L~gH~rrVg~V~wHPtA 143 (472)
T KOG0303|consen 119 DL-------------------------------------------------------TEPVVELYGHQRRVGLVQWHPTA 143 (472)
T ss_pred Cc-------------------------------------------------------ccceEEEeecceeEEEEeecccc
Confidence 21 16788999999999999999976
Q ss_pred --eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-cCCC-cEEEE
Q 005352 367 --YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQ-IVTAV 442 (701)
Q Consensus 367 --~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~-~i~~i 442 (701)
.|++++.|.+|.+||+.+++.+..+.|.+.|+++.|+. ++.+|++.+.|.+|||||.++++++... .|.+ ....+
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA 222 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence 89999999999999999999999999999999999998 9999999999999999999999988544 4543 35566
Q ss_pred EEeeCCCeEEEEe---cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 443 CYRPDGQGGIVGS---MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 443 ~~sp~g~~l~~gs---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
.|-.+|..+-+|. .+..+-+||..+-.... ..+.. ...+.|.---|.++..-..++|-.|+.||.|.+.+.
T Consensus 223 ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~----~~~el--DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 223 IFLASGKIFTTGFSRMSERQIALWDPNNLEEPI----ALQEL--DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred EEeccCceeeeccccccccceeccCcccccCcc----eeEEe--ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 7778888555553 36778999976543221 11111 111334434456644445566667999999998753
Q ss_pred c---eeeecccCCCCeEEEEEecCC
Q 005352 520 I---GKYKGLRRSGNQLSACFTSDG 541 (701)
Q Consensus 520 ~---~~~~~~~~~~~v~~l~~s~dg 541 (701)
. .-+..+....+...+.|-|..
T Consensus 297 ~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 297 PPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred CceeEEecccccCCccccccccccc
Confidence 3 222333345566667776653
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=1.3e-18 Score=166.67 Aligned_cols=275 Identities=23% Similarity=0.334 Sum_probs=198.1
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC----CCEEEEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD----GQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
+++....+++.+|.+..... ...+... .=..|...-..++|+-+ ..+||.||.-|.|+|.|+.+++
T Consensus 57 vfatvG~~rvtiy~c~~d~~-ir~lq~y-~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~-------- 126 (385)
T KOG1034|consen 57 VFATVGGNRVTIYECPGDGG-IRLLQSY-ADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ-------- 126 (385)
T ss_pred eEEEeCCcEEEEEEECCccc-eeeeeec-cCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh--------
Confidence 34445567888998765431 1111100 00147888899999764 4589999999999999998874
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLL 369 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~ 369 (701)
....+.+|...|..|.++|.. +++
T Consensus 127 ------------------------------------------------------~~~~~~ghG~sINeik~~p~~~qlvl 152 (385)
T KOG1034|consen 127 ------------------------------------------------------CSKNYRGHGGSINEIKFHPDRPQLVL 152 (385)
T ss_pred ------------------------------------------------------hccceeccCccchhhhcCCCCCcEEE
Confidence 234567899999999999988 999
Q ss_pred EEECCCcEEEEECCCCeeeeeec----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE-------------
Q 005352 370 SASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW------------- 432 (701)
Q Consensus 370 s~s~dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~------------- 432 (701)
++|.|.+|++|++++..|+..|. |.+.|.++.|++ ++.+|++++.|.+|++|++...+....
T Consensus 153 s~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~ 231 (385)
T KOG1034|consen 153 SASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTT 231 (385)
T ss_pred EecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCcc
Confidence 99999999999999999999997 999999999999 999999999999999999985432110
Q ss_pred ----------------ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee------eeeeEEeecccCCCCCCee
Q 005352 433 ----------------VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE------LDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 433 ----------------~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~------~~~~~~~~~~~~~~~~~i~ 490 (701)
-.|...|-|+.|- |.++++-+-++.|..|....-+.. .+...............|.
T Consensus 232 ~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iW 309 (385)
T KOG1034|consen 232 RPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIW 309 (385)
T ss_pred CcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceE
Confidence 0122333344443 568888888899999987321110 0111111112223334455
Q ss_pred EEE--EecCCCCEEEEEECCCcEEEEeCCccce----eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 491 GFQ--FLPQDSSKVMVSCADSQVRILQGPNVIG----KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 491 ~l~--~~p~~~~~l~~~s~dg~I~iwd~~~~~~----~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
-+. |.| -...|+.|...|.|++||+..... ++........|...+|+.||.+|+...+|++|.-||.
T Consensus 310 firf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 310 FIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EEEEeecH-HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 444 455 467899999999999999985433 2222334567899999999999999999999999985
No 159
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=3.5e-18 Score=175.78 Aligned_cols=144 Identities=15% Similarity=0.209 Sum_probs=109.2
Q ss_pred ECCCcEEEEeCCcccee----eecccCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccC
Q 005352 506 CADSQVRILQGPNVIGK----YKGLRRSGNQLSACFTS-DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTT 580 (701)
Q Consensus 506 s~dg~I~iwd~~~~~~~----~~~~~~~~~v~~l~~s~-dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~ 580 (701)
+..|.|-||+++..-.. +.+..+...|+.+.|.| |...|+.+++||.|++|.+..+..+..
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~-------------- 665 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN-------------- 665 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc--------------
Confidence 44678888888754332 23344667899999999 678999999999999999987653221
Q ss_pred CceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhh
Q 005352 581 NASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQY 660 (701)
Q Consensus 581 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 660 (701)
..........+...+..+.|.|- .+..+++.+.|-+|++|+...+..-.++.+|
T Consensus 666 ---------------~~tPe~~lt~h~eKI~slRfHPL---AadvLa~asyd~Ti~lWDl~~~~~~~~l~gH-------- 719 (1012)
T KOG1445|consen 666 ---------------EMTPEKILTIHGEKITSLRFHPL---AADVLAVASYDSTIELWDLANAKLYSRLVGH-------- 719 (1012)
T ss_pred ---------------cCCcceeeecccceEEEEEecch---hhhHhhhhhccceeeeeehhhhhhhheeccC--------
Confidence 00111122223445777788885 3566788899999999999999888888888
Q ss_pred hhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 661 KFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 661 ~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
.+.++.++++++ |+.|+|-+.||+||||.
T Consensus 720 ---tdqIf~~AWSpd-Gr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 720 ---TDQIFGIAWSPD-GRRIATVCKDGTLRVYE 748 (1012)
T ss_pred ---cCceeEEEECCC-CcceeeeecCceEEEeC
Confidence 578999999999 99999999999999996
No 160
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1e-18 Score=168.27 Aligned_cols=281 Identities=17% Similarity=0.253 Sum_probs=195.9
Q ss_pred cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 214 ~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
..++++-..|.|++|+.... ...+++++|.+.+..|+|.. .+..+.+|+.||+|++||+........
T Consensus 41 ~~vav~lSngsv~lyd~~tg-------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~---- 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG-------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR---- 109 (376)
T ss_pred eeEEEEecCCeEEEEeccch-------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh----
Confidence 34667888999999986541 12256888999999999976 466799999999999999988653322
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc-cCeEEEEEecCC-eEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS-GEILDLSWSKNN-YLL 369 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~l~~s~~~-~l~ 369 (701)
..+..|. .+..+++..-.+ .++
T Consensus 110 --------------------------------------------------------~~~~~~~~~~f~~ld~nck~~ii~ 133 (376)
T KOG1188|consen 110 --------------------------------------------------------ISWTQQSGTPFICLDLNCKKNIIA 133 (376)
T ss_pred --------------------------------------------------------eeccCCCCCcceEeeccCcCCeEE
Confidence 2223333 345566655444 555
Q ss_pred EEE----CCCcEEEEECCCCee-eeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC----cEEEEecCCCc
Q 005352 370 SAS----IDKTVRLWRVGNDHC-LRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC----HVVDWVDIRQI 438 (701)
Q Consensus 370 s~s----~dg~I~iWd~~~~~~-~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~----~~~~~~~~~~~ 438 (701)
+|. .+-.|.+||++..+. +..+. |.+.|+++.|+|.+.++|++|+.||.|.+||+... .++..+.+...
T Consensus 134 ~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sS 213 (376)
T KOG1188|consen 134 CGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSS 213 (376)
T ss_pred eccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccce
Confidence 554 356799999998876 66664 99999999999999999999999999999999764 24467778888
Q ss_pred EEEEEEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEee----cccCCCCCCeeEEEEecCCCCEEEEEEC-CCcEE
Q 005352 439 VTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVH----SKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVR 512 (701)
Q Consensus 439 i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~----~~~~~~~~~i~~l~~~p~~~~~l~~~s~-dg~I~ 512 (701)
|..+.|..++ +.|.+-+......+|+++.+........... .........+.. ..+|.+....+.++. -+...
T Consensus 214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~ 292 (376)
T KOG1188|consen 214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGT 292 (376)
T ss_pred eeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCcee
Confidence 9999999877 4688889999999999998764322211100 001111111111 234545566666555 56666
Q ss_pred EEeCCc------cceeeeccc-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 513 ILQGPN------VIGKYKGLR-RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 513 iwd~~~------~~~~~~~~~-~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++-+.. ........+ |..-|.++.|...+.++.||++||.+.+|......
T Consensus 293 ~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da~ 349 (376)
T KOG1188|consen 293 IFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDAT 349 (376)
T ss_pred EEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCCcc
Confidence 654331 111122222 56677888898899999999999999999975443
No 161
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=4.4e-19 Score=181.26 Aligned_cols=260 Identities=18% Similarity=0.272 Sum_probs=191.1
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
++..|...|+.++|.|....|++|+.||+|++|+++......
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~-------------------------------------- 330 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSA-------------------------------------- 330 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCcc--------------------------------------
Confidence 567799999999999999999999999999999994311000
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC------e----eee-eec
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND------H----CLR-VFP 392 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~------~----~~~-~~~ 392 (701)
...-+++.+|.+|.++|.|+++.+++ ++++|+.||+|+.|++... . ... ...
T Consensus 331 ----------------~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~G 394 (577)
T KOG0642|consen 331 ----------------EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLG 394 (577)
T ss_pred ----------------ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceec
Confidence 00117889999999999999999999 9999999999999976421 1 111 224
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE--ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCee
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW--VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~--~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~ 470 (701)
|.+.|+.+++++ ....|++++.||++++|+........+ ....+..+++.+.... ++....+.....+++.+...
T Consensus 395 htdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~ev 471 (577)
T KOG0642|consen 395 HTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDMEV 471 (577)
T ss_pred cccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch--hHhhhhhcccccccchhhhh
Confidence 999999999999 788899999999999999877666322 2223345555554332 12222233444444443322
Q ss_pred eeeeeEEeec--ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe
Q 005352 471 ELDAEICVHS--KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 471 ~~~~~~~~~~--~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs 548 (701)
.....+.... ........+..+.++| ...+.+++..|+.|+++|..+....+....|...++++++.|+|-+|++++
T Consensus 472 ~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s 550 (577)
T KOG0642|consen 472 VSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS 550 (577)
T ss_pred hhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeec
Confidence 2221111111 0112235677788888 678999999999999999998888877777999999999999999999999
Q ss_pred CCCcEEEEeCCCCC
Q 005352 549 EDSNVYMWNCIGHE 562 (701)
Q Consensus 549 ~Dg~I~iWd~~~~~ 562 (701)
.|+.+++|++....
T Consensus 551 ~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 551 HDGSVRLWKLDVKT 564 (577)
T ss_pred CCceeehhhccchh
Confidence 99999999987654
No 162
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5e-18 Score=163.61 Aligned_cols=192 Identities=16% Similarity=0.205 Sum_probs=153.3
Q ss_pred CeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeC-CCCEEEEEEcCCcEEEEeCCCCcEE---EEecCC-CcE
Q 005352 366 NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVV---DWVDIR-QIV 439 (701)
Q Consensus 366 ~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~-~~~~l~sgs~dg~v~iwd~~~~~~~---~~~~~~-~~i 439 (701)
..++++-..|.|++||..+++.+..|+ ++..++.+.|... ....+.+++.||+|++||++..... .+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 368888889999999999999999998 7788888888763 3678999999999999999987544 333333 456
Q ss_pred EEEEEeeCCCeEEEEec----CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 440 TAVCYRPDGQGGIVGSM----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
.+++..-.++.+++|+. +-.|.+||++..+.. +......|...|++++|+|.++++|++|+.||.|.+||
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccch------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 67776667788888765 567999999987653 23345678899999999999999999999999999999
Q ss_pred CCccc---eeeecccCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCCC
Q 005352 516 GPNVI---GKYKGLRRSGNQLSACFTSDG-KHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 516 ~~~~~---~~~~~~~~~~~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
++... .......+...|..+.|..++ +.|.+-+.....++|+++.+.+
T Consensus 195 ~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 195 TKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred cCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 87432 222233467789999999877 5688889999999999998874
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=3e-18 Score=171.94 Aligned_cols=208 Identities=19% Similarity=0.269 Sum_probs=175.3
Q ss_pred cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 214 ~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
-+++.|+..+.|+|||++ .....+.+++|+..|++|.+.....|||+++..|-|.|..+.++....++..
T Consensus 92 ~y~~sgG~~~~Vkiwdl~-------~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~--- 161 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLR-------AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI--- 161 (673)
T ss_pred eeeeccCcCceeeehhhH-------HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec---
Confidence 466779999999999765 2233456788999999999999999999999999999999988764433321
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~ 371 (701)
+....|.-+.|++.. +|.++
T Consensus 162 ----------------------------------------------------------~sgqsvRll~ys~skr~lL~~a 183 (673)
T KOG4378|consen 162 ----------------------------------------------------------DSGQSVRLLRYSPSKRFLLSIA 183 (673)
T ss_pred ----------------------------------------------------------CCCCeEEEeecccccceeeEee
Confidence 123456688999987 88899
Q ss_pred ECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCC
Q 005352 372 SIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ 449 (701)
Q Consensus 372 s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~ 449 (701)
+.+|.|.+||+....++..+. |..+...|+|+|.+..+|++.+.|..|.+||++..+....+....+.+.++|.++|.
T Consensus 184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 184 SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGT 263 (673)
T ss_pred ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCce
Confidence 999999999999888877665 999999999999999999999999999999999988888888889999999999999
Q ss_pred eEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 450 GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 450 ~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
+|++|+..|.|..||++..+.... ....|...|++++|-|
T Consensus 264 ~L~aG~s~G~~i~YD~R~~k~Pv~-------v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRSTKAPVA-------VRSAHDASVTRVAFQP 303 (673)
T ss_pred EEEeecCCceEEEEecccCCCCce-------EeeecccceeEEEeee
Confidence 999999999999999998764432 1334556799999988
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=9.2e-19 Score=192.81 Aligned_cols=276 Identities=14% Similarity=0.201 Sum_probs=209.8
Q ss_pred cccceEEEEEccCccchh--hhcccCceeccCCCcEEEEEEccCCCE----EEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 220 SKVQRVKVYHCKKRSKEL--SALYKGQEIQAHDGSILTMKFSPDGQY----LASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~--~~~~~~~~l~~H~~~I~~l~fspdg~~----Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
+.+.++-||.+.....+. .... .++ -...-+.++|.+.|.. ||.|.+||.|.+||...-..-
T Consensus 36 st~~slEifeld~~~~~~dlk~~~---s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~-------- 103 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVG---SLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN-------- 103 (1049)
T ss_pred ccccccceeeecccCccccccccc---ccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccC--------
Confidence 556667777665443321 1111 111 2345778999987765 899999999999997652100
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~ 371 (701)
.....+..+..|++.|..|.|++.. .|++|
T Consensus 104 ------------------------------------------------~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG 135 (1049)
T KOG0307|consen 104 ------------------------------------------------ASEEVLATKSKHTGPVLGLDFNPFQGNLLASG 135 (1049)
T ss_pred ------------------------------------------------cchHHHhhhcccCCceeeeeccccCCceeecc
Confidence 0013445667899999999999976 99999
Q ss_pred ECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCC--CcEEEEEEe
Q 005352 372 SIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIR--QIVTAVCYR 445 (701)
Q Consensus 372 s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~--~~i~~i~~s 445 (701)
+.||.|.|||+.+-+.-..+. ....|.+++|+......|++++.+|.+.|||++..+.+ .+..+. ..+..++|+
T Consensus 136 a~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~Wh 215 (1049)
T KOG0307|consen 136 ADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWH 215 (1049)
T ss_pred CCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeC
Confidence 999999999998865444442 56789999999877888999999999999999987655 433332 458899999
Q ss_pred eCC-CeEEEEecCC---cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce
Q 005352 446 PDG-QGGIVGSMMG---DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG 521 (701)
Q Consensus 446 p~g-~~l~~gs~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~ 521 (701)
|+. ..+++++.|. .|.+||++...-.. .....|...|.++.|++.|..++++++.|++|.+|+..+...
T Consensus 216 P~~aTql~~As~dd~~PviqlWDlR~assP~-------k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 216 PDHATQLLVASGDDSAPVIQLWDLRFASSPL-------KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV 288 (1049)
T ss_pred CCCceeeeeecCCCCCceeEeecccccCCch-------hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE
Confidence 976 4666776654 48999988643221 123567789999999999889999999999999999998777
Q ss_pred eeecccCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCC
Q 005352 522 KYKGLRRSGNQLSACFTSDGK-HIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 522 ~~~~~~~~~~v~~l~~s~dg~-~l~sgs~Dg~I~iWd~~~~~ 562 (701)
..........+..+.|.|... .++.++-||.|-||.+.+..
T Consensus 289 l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 289 LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 777766788999999999775 78889999999999998765
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=5.7e-18 Score=162.27 Aligned_cols=295 Identities=16% Similarity=0.270 Sum_probs=208.5
Q ss_pred eccCCCcEEEEEEcc-----CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccccee
Q 005352 246 IQAHDGSILTMKFSP-----DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (701)
Q Consensus 246 l~~H~~~I~~l~fsp-----dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (701)
...|+.+|..++|.+ .-+.+||+|. ..+.+|.......+..+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~l-------------------------------- 80 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLL-------------------------------- 80 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeee--------------------------------
Confidence 346889999999985 2457888887 46889987553211111
Q ss_pred eEEeeecCCccEEEcCCccccccCCCeEEE--cCCccCeEEEEEecC----C-eEEEEECCCcEEEEECCCCeeeeeec-
Q 005352 321 LKSLRRTSESACVVFPPKVFRILEKPLHEF--HGHSGEILDLSWSKN----N-YLLSASIDKTVRLWRVGNDHCLRVFP- 392 (701)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~l~~s~~----~-~l~s~s~dg~I~iWd~~~~~~~~~~~- 392 (701)
+.+ ..|......++|+-+ + +++.++.-|.|+|.|+.++++...+.
T Consensus 81 ---------------------------q~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~g 133 (385)
T KOG1034|consen 81 ---------------------------QSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRG 133 (385)
T ss_pred ---------------------------eeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceec
Confidence 111 125566677777653 2 89999999999999999999988876
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe----cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~----~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
|...|+.|.|+|.+.+++++++.|..||+|++++..++..+ +|++.|.++.|+++|.+|++++.|..+++|++...
T Consensus 134 hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 134 HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 99999999999988899999999999999999999988655 58899999999999999999999999999999844
Q ss_pred eeeeeee--------------------EEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcccee---ee-
Q 005352 469 HLELDAE--------------------ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK---YK- 524 (701)
Q Consensus 469 ~~~~~~~--------------------~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~---~~- 524 (701)
+.....+ +........|...|.|+.|. ++++++-+-++.|..|...+.... .+
T Consensus 214 ~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp 290 (385)
T KOG1034|consen 214 EFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKP 290 (385)
T ss_pred HHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCC
Confidence 3211110 00111223344555666663 478999999999999986322111 10
Q ss_pred ----------cccCCCCeEE--EEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCC
Q 005352 525 ----------GLRRSGNQLS--ACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLK 592 (701)
Q Consensus 525 ----------~~~~~~~v~~--l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 592 (701)
..-....|.- .+|.|-++.||.|...|.|++||+++.+++..
T Consensus 291 ~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~-------------------------- 344 (385)
T KOG1034|consen 291 PESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC-------------------------- 344 (385)
T ss_pred CccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC--------------------------
Confidence 0012333444 45567789999999999999999998874310
Q ss_pred CCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCC
Q 005352 593 CGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWP 639 (701)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~ 639 (701)
....+......+++.+|+.+ +..++....|+.+--|+
T Consensus 345 ------ttl~~s~~~~tVRQ~sfS~d----gs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 345 ------TTLTHSKSGSTVRQTSFSRD----GSILVLVCDDGTVWRWD 381 (385)
T ss_pred ------ceEEeccccceeeeeeeccc----CcEEEEEeCCCcEEEEE
Confidence 11122223344566677776 56666777777776665
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=4.7e-17 Score=155.58 Aligned_cols=248 Identities=18% Similarity=0.276 Sum_probs=178.0
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEE
Q 005352 254 LTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACV 333 (701)
Q Consensus 254 ~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (701)
..+.|+|||..|++-+.|..+++|++...-....... . +.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~------~-------------~~~-------------------- 93 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADG------P-------------LNF-------------------- 93 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCC------c-------------ccc--------------------
Confidence 4689999999999999999999999854321000000 0 000
Q ss_pred EcCCccccccCCCeEEE-cCCccCeEEEEEe-------cCC-eEEEEECCCcEEEEECCCCeeeeeec---CCC---CeE
Q 005352 334 VFPPKVFRILEKPLHEF-HGHSGEILDLSWS-------KNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSN---YVT 398 (701)
Q Consensus 334 ~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s-------~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~---~V~ 398 (701)
+...++ ......|.+.+|- |+. ++++.+.+.-|++||.-+++....+. |.. ...
T Consensus 94 -----------~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh 162 (406)
T KOG2919|consen 94 -----------SKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH 162 (406)
T ss_pred -----------ccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe
Confidence 000011 1123457777775 344 89999999999999999999887775 433 456
Q ss_pred EEEEeeCCCCEEEEEEcCCcEEEEeC-CCCcEE---EE-----ecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCC
Q 005352 399 CVHFNPVDDNYFISGSIDGKVRIWAV-LSCHVV---DW-----VDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~dg~v~iwd~-~~~~~~---~~-----~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
+++|+| |+.+|++|. ...|++||+ +.++-. .. .+..+.|.+++|+| +...+++|+...++-||.-...
T Consensus 163 sL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 163 SLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred eEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 899999 999999876 678999999 555322 22 23367799999999 4558999999999999987766
Q ss_pred eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-CCcEEEEeCCcccee-eecccCCC-CeE--EEEEecCCCE
Q 005352 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPNVIGK-YKGLRRSG-NQL--SACFTSDGKH 543 (701)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-dg~I~iwd~~~~~~~-~~~~~~~~-~v~--~l~~s~dg~~ 543 (701)
.... ....|.+.|+.++|++ +++.|++|+. +..|..||++..... +...+|.. .-. -....|++++
T Consensus 241 ~pl~--------llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~ 311 (406)
T KOG2919|consen 241 RPLQ--------LLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEI 311 (406)
T ss_pred Ccee--------eecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCce
Confidence 5432 1336778999999999 6788888876 889999999854433 33333433 222 3445689999
Q ss_pred EEEEeCCCcEEEEeCCCCC
Q 005352 544 IVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 544 l~sgs~Dg~I~iWd~~~~~ 562 (701)
|++|+.||.|++||+++.-
T Consensus 312 LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 312 LASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred eeccCCCccEEEEecCCCC
Confidence 9999999999999998843
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=1.9e-17 Score=171.40 Aligned_cols=268 Identities=16% Similarity=0.253 Sum_probs=204.7
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.++.+++..++.+ .+.++.|||.+.... .+.++||+..|.|++|+.||+.+|+|+.|..|.+|+-.-...+
T Consensus 18 ~afkPDGsqL~lA-Ag~rlliyD~ndG~l-------lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 18 IAFKPDGTQLILA-AGSRLLVYDTSDGTL-------LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred eEECCCCceEEEe-cCCEEEEEeCCCccc-------ccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-
Confidence 3556677676654 456788998654432 2578999999999999999999999999999999985432110
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
-..|.+.|.|+.|+|-.
T Consensus 89 ---------------------------------------------------------------kYSH~D~IQCMsFNP~~ 105 (1081)
T KOG1538|consen 89 ---------------------------------------------------------------KYSHNDAIQCMSFNPIT 105 (1081)
T ss_pred ---------------------------------------------------------------eeccCCeeeEeecCchH
Confidence 13599999999999988
Q ss_pred -eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---CCCcEEEE
Q 005352 367 -YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---IRQIVTAV 442 (701)
Q Consensus 367 -~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---~~~~i~~i 442 (701)
.|++++-. ..-+|..... .+...+....|.+++|.. |+.+|+.|-.+|+|.|-+-...+.+.... ..++|.++
T Consensus 106 h~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi 182 (1081)
T KOG1538|consen 106 HQLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSI 182 (1081)
T ss_pred HHhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEE
Confidence 88887754 4678876543 333444567889999998 99999999999999998765554444433 56889999
Q ss_pred EEeeCC-----CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 443 CYRPDG-----QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 443 ~~sp~g-----~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
+|+|.. ..+++.....++.+|.+....... .....-...|+++.+ ++.+++.|+.|+.+.+|.-.
T Consensus 183 ~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk---------~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 183 CWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK---------DRALNFDPCCISYFT-NGEYILLGGSDKQLSLFTRD 252 (1081)
T ss_pred EecCCCCCCccceEEEEeccceeEEEEecceeecc---------cccCCCCchhheecc-CCcEEEEccCCCceEEEeec
Confidence 999953 478888899999999987643321 222334457889999 89999999999999999754
Q ss_pred ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 518 NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 518 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
. ...-........|..++..|++++++.|+.||+|-.|++-.
T Consensus 253 G-vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 253 G-VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred C-eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 3 22222223678999999999999999999999999998743
No 168
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=8.6e-18 Score=156.41 Aligned_cols=245 Identities=18% Similarity=0.298 Sum_probs=177.4
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.+++|.+.|+++.|-.++ +|.+|..-|.|++|.+++...+..+..
T Consensus 9 vLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~---------------------------------- 53 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRL---------------------------------- 53 (323)
T ss_pred Eeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhh----------------------------------
Confidence 467899999999998877 599999999999999988754333321
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCe------------------
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH------------------ 386 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~------------------ 386 (701)
.|...|+.+..-|++.|.+-+.|..+.+|++.-..
T Consensus 54 ---------------------------~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfS 106 (323)
T KOG0322|consen 54 ---------------------------FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFS 106 (323)
T ss_pred ---------------------------hccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccce
Confidence 23445555555555555555555555555553311
Q ss_pred -------------------------------eeeeec-----CCCCeEEEEEeeCCCC--EEEEEEcCCcEEEEeCCCCc
Q 005352 387 -------------------------------CLRVFP-----HSNYVTCVHFNPVDDN--YFISGSIDGKVRIWAVLSCH 428 (701)
Q Consensus 387 -------------------------------~~~~~~-----h~~~V~~l~f~p~~~~--~l~sgs~dg~v~iwd~~~~~ 428 (701)
.+.... ..+.++|..+....+. ++++|..+|.|.+||+.++.
T Consensus 107 l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~ 186 (323)
T KOG0322|consen 107 LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGD 186 (323)
T ss_pred eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCc
Confidence 111110 2345666664332333 46788899999999999863
Q ss_pred EE-----------EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC--eeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 429 VV-----------DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN--HLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 429 ~~-----------~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
.+ ....|..+|.++.|.+.-..=++|+.+..+..|.+... .++....+++ ....+..+.+-
T Consensus 187 ~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l------knpGv~gvrIR 260 (323)
T KOG0322|consen 187 KIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL------KNPGVSGVRIR 260 (323)
T ss_pred eeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe------cCCCccceEEc
Confidence 22 33457889999999987777788999999999998754 2322222222 23567888888
Q ss_pred cCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 496 PQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 496 p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
| |++.+++++.|+.||||..++........-|...|++++|+|+...+|.|+.|++|.+|++
T Consensus 261 p-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 261 P-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred c-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9 8999999999999999999877666555558899999999999999999999999999986
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=3.3e-17 Score=160.55 Aligned_cols=225 Identities=18% Similarity=0.262 Sum_probs=171.0
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCee-------eeee-cCCCCeEE
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHC-------LRVF-PHSNYVTC 399 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~-------~~~~-~h~~~V~~ 399 (701)
+..++.+.....-..+..-.+.||+++|.+++|+|-+ .+++||.|.+|.||++..+.. +..+ .|...|.-
T Consensus 57 gaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~ 136 (472)
T KOG0303|consen 57 GAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGL 136 (472)
T ss_pred cceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEE
Confidence 3444444433332334555678999999999999966 899999999999999876533 2333 49999999
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
++|+|.-.+.|++++.|.+|.+||+.+++.+..+.|...|.+++|+.+|.+|++++.|..|++||.++++...+.
T Consensus 137 V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~----- 211 (472)
T KOG0303|consen 137 VQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG----- 211 (472)
T ss_pred EeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-----
Confidence 999998899999999999999999999998877889999999999999999999999999999999998875432
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEEC---CCcEEEEeCCccceee--ecccCCCCeEEEEEecCCCEEEE-EeCCCcE
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCA---DSQVRILQGPNVIGKY--KGLRRSGNQLSACFTSDGKHIVS-AGEDSNV 553 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~---dg~I~iwd~~~~~~~~--~~~~~~~~v~~l~~s~dg~~l~s-gs~Dg~I 553 (701)
......+-....|.. ++.++.+|.. +.++-+||..+..... ........|.---|.+|...|.. |-.|+.|
T Consensus 212 --~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~I 288 (472)
T KOG0303|consen 212 --VAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSI 288 (472)
T ss_pred --ccccCCCcceeEEec-cCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcce
Confidence 111223344555666 5665544433 7889999977554332 22234556666667888887754 5579999
Q ss_pred EEEeCCCCC
Q 005352 554 YMWNCIGHE 562 (701)
Q Consensus 554 ~iWd~~~~~ 562 (701)
+.|.+.+..
T Consensus 289 RYyEit~d~ 297 (472)
T KOG0303|consen 289 RYFEITNEP 297 (472)
T ss_pred EEEEecCCC
Confidence 999998766
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=3.2e-17 Score=156.68 Aligned_cols=276 Identities=19% Similarity=0.262 Sum_probs=197.8
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCC--------------eeeeeecCCCCeEEEEEe-------eCCCCEEEEE
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGND--------------HCLRVFPHSNYVTCVHFN-------PVDDNYFISG 413 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~--------------~~~~~~~h~~~V~~l~f~-------p~~~~~l~sg 413 (701)
-...+.|+|+| .|++-+.|..+.+|++... .....+.....|...+|- | +.+++++.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeeec
Confidence 34567999999 9999999999999998432 111222245667777775 5 67899999
Q ss_pred EcCCcEEEEeCCCCcEEEE---ecCCC---cEEEEEEeeCCCeEEEEecCCcEEEEECC-CCeeeeeeeEEeecccCCCC
Q 005352 414 SIDGKVRIWAVLSCHVVDW---VDIRQ---IVTAVCYRPDGQGGIVGSMMGDCRFYNVS-DNHLELDAEICVHSKKKAPC 486 (701)
Q Consensus 414 s~dg~v~iwd~~~~~~~~~---~~~~~---~i~~i~~sp~g~~l~~gs~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~ 486 (701)
+.+.-|++||.-+++.... .+|.. ...+++|+|||..|++|. ...|++||+. .+.. ..........+....
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~-c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRD-CPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCC-Ccchhhhhccccccc
Confidence 9999999999999986632 33333 356899999999998875 5889999994 3332 111112222244556
Q ss_pred CCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCCCCC
Q 005352 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGHEEPA 565 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~~~~~ 565 (701)
+-|.+++|+|.+...+++++....+-||.-......+...+|.+.|+.++|.++|+.|++|+ .|-.|..||++.-..+.
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 78899999998888999999999999988777677777778999999999999999999987 47789999998766432
Q ss_pred ccccccccccccccC--CceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccC
Q 005352 566 HDQAKTIRSLERFTT--NASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKL 643 (701)
Q Consensus 566 ~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~ 643 (701)
..++.... +..+ ..-..|. +..+++++.+|.|++|+..++
T Consensus 288 -------~~L~rhv~~TNQRI---------------------------~FDld~~----~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 288 -------YALERHVGDTNQRI---------------------------LFDLDPK----GEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred -------hhhhhhccCccceE---------------------------EEecCCC----CceeeccCCCccEEEEecCCC
Confidence 22211111 0000 0122443 778888899999999998884
Q ss_pred CC-CccccccccchhhhhhhhhcccccccccCCCccEEEEec
Q 005352 644 PA-LSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAG 684 (701)
Q Consensus 644 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg 684 (701)
-. +..+..+ ...|+.+++.+. ..+++|++
T Consensus 330 gn~~sv~~~~-----------sd~vNgvslnP~-mpilatss 359 (406)
T KOG2919|consen 330 GNEVSVTGNY-----------SDTVNGVSLNPI-MPILATSS 359 (406)
T ss_pred CCcccccccc-----------cccccceecCcc-cceeeecc
Confidence 43 4444333 356777777777 77777765
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=5.4e-15 Score=159.50 Aligned_cols=372 Identities=22% Similarity=0.342 Sum_probs=249.0
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCe-eeeeecCCCC-CCceeEEeeccCCCcceeeeccccceeeE
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE-RLTEVDIPEI-DPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+..|...|.++.|.+.+..++.++.|+.+.+|+..... .+..+..... ....+... ..... ...
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~ 126 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGN------------SIL 126 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcc------------eEE
Confidence 456799999999999999999999999999999998876 4444433221 11111111 11000 000
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC-CCcEEEEECCCCeeeeeec-CCCCeEE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-DKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~-dg~I~iWd~~~~~~~~~~~-h~~~V~~ 399 (701)
......+..+..+.... .......+..|...|..++|+|++ .+++++. |+.+++|++..+..+..+. |...|.+
T Consensus 127 ~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 127 LASSSLDGTVKLWDLST---PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203 (466)
T ss_pred eccCCCCccEEEEEecC---CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEE
Confidence 00011111121111111 125567788999999999999999 7888875 9999999999988877776 8999999
Q ss_pred EEEeeCCCC-EEEEEEcCCcEEEEeCCCCcEEE--EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeE
Q 005352 400 VHFNPVDDN-YFISGSIDGKVRIWAVLSCHVVD--WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 400 l~f~p~~~~-~l~sgs~dg~v~iwd~~~~~~~~--~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~ 476 (701)
++|+| ++. ++++++.|+.|++||...+.... ...|.... ...|+|++..+++++.++.+++|++.......
T Consensus 204 ~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---- 277 (466)
T COG2319 204 LAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL---- 277 (466)
T ss_pred EEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEE----
Confidence 99998 776 55555899999999998777765 44455554 33899999899999999999999998765411
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc--cCCCCeEEEEEecCCCEEEEE-eCCCcE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL--RRSGNQLSACFTSDGKHIVSA-GEDSNV 553 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~s~dg~~l~sg-s~Dg~I 553 (701)
... ..+...+.++.|.| ++..+++++.|+.+.+|+........... .|...+..+.|.+++..++.+ ..|+.+
T Consensus 278 ~~~---~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 278 RTL---SGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred EEE---ecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence 111 33467899999999 67777778889899999887554443332 466678999994333566665 688999
Q ss_pred EEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcccc-ccCCC
Q 005352 554 YMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYV-FESFP 632 (701)
Q Consensus 554 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~-~~s~d 632 (701)
.+|++....... . .... . ....+.+.+ . . .++ .+..+
T Consensus 354 ~~~~~~~~~~~~--~------~~~~--~---------------------------~~~~~~~~~-~-~---~~~~~~~~~ 391 (466)
T COG2319 354 RLWDLRTGKPLK--T------LEGH--S---------------------------NVLSVSFSP-D-G---RVVSSGSTD 391 (466)
T ss_pred EeeecCCCceeE--E------ecCC--c---------------------------eEEEEEECC-C-C---CEEEEecCC
Confidence 999987764100 0 0000 0 011122222 1 0 111 24677
Q ss_pred CcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEeecC
Q 005352 633 KGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYG 696 (701)
Q Consensus 633 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~~g 696 (701)
+.+.+|+.............. ..+....++.. +..+++++.++.+++|....
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 392 GTVRLWDLSTGSLLRNLDGHT-----------SRVTSLDFSPD-GKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CceEEEecccCeeeeeccCCC-----------CcEEEEEECCC-CcEEEEecCCCcEEEEeccC
Confidence 888899988777655443220 23444456666 88899999999999998654
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=6.3e-16 Score=168.11 Aligned_cols=297 Identities=19% Similarity=0.311 Sum_probs=202.6
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEeecCee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRLWQVVEDER 284 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~iWd~~~~~~ 284 (701)
..+++-...++++.....|+|||+.+... +.....+ ..-...|+.|++-. |..+|++|+.||.||||+-.....
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-l~~F~n~---~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRL-LNGFDNG---AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccCce-eccccCC---CCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 34555566677777778999999976543 2222111 02345789999865 456899999999999998533210
Q ss_pred eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
.+..++..+..-. . .+.+..+.=.-+.|..
T Consensus 1146 -------------------------------~~~eLVTaw~~Ls----------------~---~~~~~r~~~~v~dWqQ 1175 (1387)
T KOG1517|consen 1146 -------------------------------KKPELVTAWSSLS----------------D---QLPGARGTGLVVDWQQ 1175 (1387)
T ss_pred -------------------------------CCceeEEeecccc----------------c---cCccCCCCCeeeehhh
Confidence 0000111100000 0 0011112224457877
Q ss_pred CC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE----EEEecCCC
Q 005352 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV----VDWVDIRQ 437 (701)
Q Consensus 365 ~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~----~~~~~~~~ 437 (701)
.. +|++++.-..|+|||.....++..+. ....|+++.-+-..++.|++|..||.|++||.+.... ..+..|..
T Consensus 1176 ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~ 1255 (1387)
T KOG1517|consen 1176 QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND 1255 (1387)
T ss_pred hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCC
Confidence 65 88888889999999999998888776 5567888877665689999999999999999986532 35556666
Q ss_pred c--EEEEEEeeCCCe-EEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 438 I--VTAVCYRPDGQG-GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 438 ~--i~~i~~sp~g~~-l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
. |..+.+.+.|-. |++|+.+|.|++||++.........+.. ........+++..++ ....+++|+. +.|.||
T Consensus 1256 ~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~---~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1256 VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA---HWEYGSALTALTVHE-HAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred cccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee---ccccCccceeeeecc-CCCeeeecCc-ceEEEE
Confidence 5 999999997755 9999999999999999852211111111 111123589999998 6888999888 999999
Q ss_pred eCCc-cceeeec-----ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 515 QGPN-VIGKYKG-----LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 515 d~~~-~~~~~~~-----~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++.. ....++. ....+.+.+++|+|..-+||+|+.|..|.||....+.
T Consensus 1331 ~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1331 SLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 9762 1111111 1144678999999999999999999999999987654
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=3.4e-16 Score=168.60 Aligned_cols=269 Identities=17% Similarity=0.166 Sum_probs=195.1
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEE
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYF 300 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~ 300 (701)
++.+.||+++... .....+ .-...|+|++|+| +..+||.|..+|.|.+||+..+.... +.
T Consensus 221 ~~~~~vW~~~~p~-~Pe~~~------~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------~s---- 281 (555)
T KOG1587|consen 221 DGVLLVWSLKNPN-TPELVL------ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------PS---- 281 (555)
T ss_pred CceEEEEecCCCC-CceEEE------ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC--------Cc----
Confidence 3479999987552 221111 2367899999999 46778888999999999998765211 00
Q ss_pred eeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC---eEEEEECCCcE
Q 005352 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YLLSASIDKTV 377 (701)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~---~l~s~s~dg~I 377 (701)
..-.....|..+++.+.|..+- -|++++.||.|
T Consensus 282 --------------------------------------------~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i 317 (555)
T KOG1587|consen 282 --------------------------------------------GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSI 317 (555)
T ss_pred --------------------------------------------ccccccccCCcCeEEEEEeccCCCCceEEEecCCcE
Confidence 0111224699999999998764 59999999999
Q ss_pred EEEECCCCeee------ee-------ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC---CCCc------EEEEecC
Q 005352 378 RLWRVGNDHCL------RV-------FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV---LSCH------VVDWVDI 435 (701)
Q Consensus 378 ~iWd~~~~~~~------~~-------~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~---~~~~------~~~~~~~ 435 (701)
..|+++.-... .. +.....+++++|.+.+.+.|+.|+.+|.|.--+- .... ......|
T Consensus 318 ~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h 397 (555)
T KOG1587|consen 318 CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH 397 (555)
T ss_pred eeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccccc
Confidence 99987644321 11 1134568999999989999999999999877332 2222 1244567
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECC-CCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS-DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
.++|+++.++|-+..++..+.|.+++||... ...... ....+...+++++|+|..+..++++..||.|.||
T Consensus 398 ~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~--------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iW 469 (555)
T KOG1587|consen 398 IGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL--------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIW 469 (555)
T ss_pred CcceEeeecCCCccceeeeeccceeEeccccCCCCcch--------hhhhccceeeeeEEcCcCceEEEEEcCCCceehh
Confidence 8999999999987766666669999999987 333221 1233445599999999989999999999999999
Q ss_pred eCCcc--ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 515 QGPNV--IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 515 d~~~~--~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
|+... .............+.+.|+++|+.|++|...|.+++|++...
T Consensus 470 DLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 470 DLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred hhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 98632 222222223556677888999999999999999999999654
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=3.2e-16 Score=147.69 Aligned_cols=274 Identities=16% Similarity=0.237 Sum_probs=194.9
Q ss_pred ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC-CCEEEEEeCC-------CcEEEEEeecCeeeeeecCCC
Q 005352 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDD-------GVVRLWQVVEDERLTEVDIPE 292 (701)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~D-------g~I~iWd~~~~~~~~~~~~~~ 292 (701)
.++.|.+-+++.....+. ...|..|.+.|+.|+-+|- .++|+|+-.+ -.+-||.+..........
T Consensus 38 ~dNqVhll~~d~e~s~l~----skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~--- 110 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELL----SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSS--- 110 (370)
T ss_pred CcceeEEEEecCccchhh----hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccc---
Confidence 357888888765544333 2346669999999999995 5567776442 236788876543110000
Q ss_pred CCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEc-CCccCeEEEEEecCC-eEEE
Q 005352 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSWSKNN-YLLS 370 (701)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~s~~~-~l~s 370 (701)
. -..+..+. .+-+.|.|+.|.|++ .+++
T Consensus 111 --------------t------------------------------------lE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 111 --------------T------------------------------------LECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred --------------h------------------------------------hhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 0 01122222 345689999999998 6655
Q ss_pred EECCCcEEEEECCCCee-eeeec------CCCCeEEEEEee-CCCCEEEEEEcCCcEEEEeCCCCcEEEEe--cCCCcEE
Q 005352 371 ASIDKTVRLWRVGNDHC-LRVFP------HSNYVTCVHFNP-VDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVT 440 (701)
Q Consensus 371 ~s~dg~I~iWd~~~~~~-~~~~~------h~~~V~~l~f~p-~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~i~ 440 (701)
-. |..|.+|++..... +..+. +....++-+|+| .+++.+++.+ |+++..||+++......+ .|...+.
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vr 218 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVR 218 (370)
T ss_pred ec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceee
Confidence 44 88999999988765 33332 566788889999 5677777665 899999999987665433 4677899
Q ss_pred EEEEeeCCC-eEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 441 AVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 441 ~i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
.+.|+|+.+ +|++++.||.|+|||.+..+... .....|...+.++.|+|...+++++|+.|..|.+|.....
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv-------~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV-------QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCccc-------cccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 999999876 56778899999999999876432 1245677899999999988999999999999999964210
Q ss_pred c--------------------ee---------eecccCCCCeEEEEEecCCCE-EEEEeCCCcEEEEeCCC
Q 005352 520 I--------------------GK---------YKGLRRSGNQLSACFTSDGKH-IVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 520 ~--------------------~~---------~~~~~~~~~v~~l~~s~dg~~-l~sgs~Dg~I~iWd~~~ 560 (701)
. .. .....|...|++++|+.-..+ +|+-+.||++.|=++..
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0 00 011237889999999986655 56779999999877643
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.74 E-value=1e-16 Score=166.00 Aligned_cols=232 Identities=19% Similarity=0.308 Sum_probs=177.2
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
.|..++|.|||..|+.+.. ..+.+||...+.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~------------------------------------------------ 44 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGT------------------------------------------------ 44 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcc------------------------------------------------
Confidence 7999999999998887764 468999998874
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEE
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF 410 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l 410 (701)
.++++++|++.|.+++|+.+| .+++|+.|+.|.+|+-.- +-+-.+.|.+.|.|+.|+| -...|
T Consensus 45 --------------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkYSH~D~IQCMsFNP-~~h~L 108 (1081)
T KOG1538|consen 45 --------------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKYSHNDAIQCMSFNP-ITHQL 108 (1081)
T ss_pred --------------cccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeeeccCCeeeEeecCc-hHHHh
Confidence 456778999999999999999 999999999999998533 3344567999999999999 77888
Q ss_pred EEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCee
Q 005352 411 ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 411 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
++++.. ..-+|......+.+ ......+.+++|..||++++.|..+|+|.+-+-...... ..........+|.
T Consensus 109 asCsLs-dFglWS~~qK~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~------~I~Rpgg~Nspiw 180 (1081)
T KOG1538|consen 109 ASCSLS-DFGLWSPEQKSVSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV------KIERPGGSNSPIW 180 (1081)
T ss_pred hhcchh-hccccChhhhhHHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce------EEeCCCCCCCCce
Confidence 888754 47789876544332 233456889999999999999999999998765432211 1223456778999
Q ss_pred EEEEecCCC----CEEEEEECCCcEEEEeCCc-cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 491 GFQFLPQDS----SKVMVSCADSQVRILQGPN-VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 491 ~l~~~p~~~----~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
+++|+|..+ ..+++.....++.+|.+.. .+.+-+ ...-...|+++.++|.|++.|+.|+.+++|.-
T Consensus 181 si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r--~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDR--ALNFDPCCISYFTNGEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred EEEecCCCCCCccceEEEEeccceeEEEEecceeecccc--cCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence 999999543 4667777777777776542 111111 12334578889999999999999999999963
No 176
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.6e-17 Score=167.39 Aligned_cols=254 Identities=19% Similarity=0.212 Sum_probs=184.1
Q ss_pred eeecCccccccccccceEEEEEccCccc-hhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSK-ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~-~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.+.+....+++++.++.+++|.+.+..+ ........-++++|.++|.|+++.+++.++.+||.||+|+.|++..+.-
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d-- 378 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD-- 378 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC--
Confidence 4556677889999999999999944221 1223344567899999999999999999999999999999999863220
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
.+... ++ ......+.||.+.|+.+++|+..
T Consensus 379 p~ds~--------------------------------------------dp------~vl~~~l~Ghtdavw~l~~s~~~ 408 (577)
T KOG0642|consen 379 PDDSY--------------------------------------------DP------SVLSGTLLGHTDAVWLLALSSTK 408 (577)
T ss_pred ccccc--------------------------------------------Cc------chhccceeccccceeeeeecccc
Confidence 00000 00 02345678999999999999987
Q ss_pred -eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-------
Q 005352 367 -YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI------- 435 (701)
Q Consensus 367 -~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~------- 435 (701)
.|++++.||+|++|+...... .+|. ..+..+.+.+-.......++...-+.--++++...+.+.++..
T Consensus 409 ~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~ 487 (577)
T KOG0642|consen 409 DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPR 487 (577)
T ss_pred cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccc
Confidence 999999999999999877766 4454 4456677777542223333333333334444444443333321
Q ss_pred -CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 436 -RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 436 -~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
...+..+.++|.+...+++..|+.|+++|..++.+... ...|...++++++.| ++.+|++++.|+.+++|
T Consensus 488 ~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s--------~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~ 558 (577)
T KOG0642|consen 488 RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS--------MVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLW 558 (577)
T ss_pred ccCccceEEecCCCCeeEecccCCceecccccccccchh--------eeeccceecceeecC-CCceEEeecCCceeehh
Confidence 13477889999999999999999999999998876543 344557799999999 89999999999999999
Q ss_pred eCCccceee
Q 005352 515 QGPNVIGKY 523 (701)
Q Consensus 515 d~~~~~~~~ 523 (701)
.+.......
T Consensus 559 kld~k~~~~ 567 (577)
T KOG0642|consen 559 KLDVKTCVL 567 (577)
T ss_pred hccchheee
Confidence 876544443
No 177
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.7e-17 Score=181.31 Aligned_cols=233 Identities=15% Similarity=0.203 Sum_probs=182.1
Q ss_pred ccccccccceEEEEEccCc--cchhhhcccCceeccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 215 DAMFCSKVQRVKVYHCKKR--SKELSALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~~--~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
.++.|..||.|.+|+..+. ..+.. .......|++.|..+.|++... +||+|+.||.|.|||+.+.+......
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~---~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-- 156 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEE---VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-- 156 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchH---HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--
Confidence 3555889999999998653 22211 1234567999999999999755 99999999999999998754211110
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLL 369 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~ 369 (701)
-....+.|.+|+|+..- .|+
T Consensus 157 ----------------------------------------------------------~~~~~~eI~~lsWNrkvqhILA 178 (1049)
T KOG0307|consen 157 ----------------------------------------------------------SQAPPSEIKCLSWNRKVSHILA 178 (1049)
T ss_pred ----------------------------------------------------------CCCCcccceEeccchhhhHHhh
Confidence 01245789999999865 889
Q ss_pred EEECCCcEEEEECCCCeeeeeecCC---CCeEEEEEeeCCCCEEEEEEcCC---cEEEEeCCCCc--EEEEecCCCcEEE
Q 005352 370 SASIDKTVRLWRVGNDHCLRVFPHS---NYVTCVHFNPVDDNYFISGSIDG---KVRIWAVLSCH--VVDWVDIRQIVTA 441 (701)
Q Consensus 370 s~s~dg~I~iWd~~~~~~~~~~~h~---~~V~~l~f~p~~~~~l~sgs~dg---~v~iwd~~~~~--~~~~~~~~~~i~~ 441 (701)
+++.+|.+.|||++..+.+..+... ..+..++|+|.+...+++++.|. .|.+||+|... ......|...|.+
T Consensus 179 S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gils 258 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILS 258 (1049)
T ss_pred ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceee
Confidence 9999999999999999888777622 34889999997777888887664 59999998543 2234588999999
Q ss_pred EEEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 442 VCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 442 i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
+.|++.+ .++++++.|+.|.+|+.++++.... .......+..+.|+|.+...+++++.||.|.||.+..
T Consensus 259 lsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~--------~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 259 LSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE--------LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred eccCCCCchhhhcccCCCCeeEecCCCceEeee--------cCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 9999966 8999999999999999999875432 2234578999999999889999999999999998763
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=4.5e-15 Score=155.98 Aligned_cols=275 Identities=14% Similarity=0.194 Sum_probs=175.3
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEeecCeeeeeecCCCCCCce
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQVVEDERLTEVDIPEIDPSC 297 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 297 (701)
...++.|.+|++... ..+. ..+.+. +.+....|.++|++++|+.++ .++.|.+|++.....+...
T Consensus 8 ~~~~~~I~~~~~~~~-g~l~---~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~--------- 73 (330)
T PRK11028 8 SPESQQIHVWNLNHE-GALT---LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA--------- 73 (330)
T ss_pred cCCCCCEEEEEECCC-Ccee---eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe---------
Confidence 456899999998532 1111 112232 345677899999999987664 4788999998632111100
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE-CCC
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS-IDK 375 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s-~dg 375 (701)
.... .......++++|++ +|++++ .++
T Consensus 74 --------------------------------------------------~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~ 102 (330)
T PRK11028 74 --------------------------------------------------AESP-LPGSPTHISTDHQGRFLFSASYNAN 102 (330)
T ss_pred --------------------------------------------------eeec-CCCCceEEEECCCCCEEEEEEcCCC
Confidence 0000 11235679999999 666655 488
Q ss_pred cEEEEECCCC----eeeeeecCCCCeEEEEEeeCCCCEEEEE-EcCCcEEEEeCCCCcEEE-------EecCCCcEEEEE
Q 005352 376 TVRLWRVGND----HCLRVFPHSNYVTCVHFNPVDDNYFISG-SIDGKVRIWAVLSCHVVD-------WVDIRQIVTAVC 443 (701)
Q Consensus 376 ~I~iWd~~~~----~~~~~~~h~~~V~~l~f~p~~~~~l~sg-s~dg~v~iwd~~~~~~~~-------~~~~~~~i~~i~ 443 (701)
.|.+|++.+. +.+..+.+...+.+++++| ++++++++ ..++.|.+||+.+...+. ..........+.
T Consensus 103 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 103 CVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred eEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence 9999999743 2333333445577889999 88777554 456999999997632221 112234567899
Q ss_pred EeeCCCeEEEEec-CCcEEEEECCC--CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCcc
Q 005352 444 YRPDGQGGIVGSM-MGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNV 519 (701)
Q Consensus 444 ~sp~g~~l~~gs~-dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~ 519 (701)
|+|+|++++++.. ++.|.+|++.. +.......+...............+.++| ++++++++. .++.|.+|++...
T Consensus 182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCC
Confidence 9999999988876 89999999974 33322222211111111122334688999 677777775 4789999997532
Q ss_pred ce--eeecc-cCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCCC
Q 005352 520 IG--KYKGL-RRSGNQLSACFTSDGKHIVSAGE-DSNVYMWNCIG 560 (701)
Q Consensus 520 ~~--~~~~~-~~~~~v~~l~~s~dg~~l~sgs~-Dg~I~iWd~~~ 560 (701)
.. .+... ........+.|+|+|++|++++. ++.|.+|+++.
T Consensus 261 ~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 261 GSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 21 11111 11124557899999999998775 89999998864
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=1.6e-17 Score=176.12 Aligned_cols=247 Identities=22% Similarity=0.312 Sum_probs=192.3
Q ss_pred hhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecc
Q 005352 236 ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315 (701)
Q Consensus 236 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (701)
-.+.......|.+|..+|+|+.|...|.|++||+.|..++||..++..+
T Consensus 176 mvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~------------------------------- 224 (1113)
T KOG0644|consen 176 MVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC------------------------------- 224 (1113)
T ss_pred HHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh-------------------------------
Confidence 3344455567889999999999999999999999999999999877643
Q ss_pred ccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-C
Q 005352 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-H 393 (701)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h 393 (701)
+....||.+.|++++.+.++ +++++|.|..|++|.+.++.++..+. |
T Consensus 225 -------------------------------lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrgh 273 (1113)
T KOG0644|consen 225 -------------------------------LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGH 273 (1113)
T ss_pred -------------------------------hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcc
Confidence 34557999999999999988 99999999999999999999998875 9
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-----EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC
Q 005352 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-----WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-----~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
++.|++|+|+| +.+.+.||++++||.+-...+. .......+-++.|..++..+++|+.++.-..|.+...
T Consensus 274 tgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l 348 (1113)
T KOG0644|consen 274 TGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL 348 (1113)
T ss_pred ccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHh
Confidence 99999999999 3377889999999998221111 1223455777888888999999999999988887543
Q ss_pred eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCC-EEEEE
Q 005352 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK-HIVSA 547 (701)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~sg 547 (701)
.... ..+.-+..+.+-..+.+++-.+-.+++|++.+.........|...+..+.++|-.. ...++
T Consensus 349 ~~~~--------------~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 349 AWRS--------------NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred hhhc--------------cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence 2111 11122222222335666677788899999987765555566889999999999654 45689
Q ss_pred eCCCcEEEEeCCCCCC
Q 005352 548 GEDSNVYMWNCIGHEE 563 (701)
Q Consensus 548 s~Dg~I~iWd~~~~~~ 563 (701)
+.||.+.|||+-.+..
T Consensus 415 g~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEGIP 430 (1113)
T ss_pred cCCCceEeeecccCCc
Confidence 9999999999988764
No 180
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.3e-16 Score=160.49 Aligned_cols=257 Identities=21% Similarity=0.293 Sum_probs=197.7
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
..|..|.|.|..|.|...|..|++|+.|..|.+||+..+.....+
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f----------------------------------- 180 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF----------------------------------- 180 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc-----------------------------------
Confidence 457789999999999999999999999999999999887533222
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC---eEEEEECCCcEEEEECCCC-eee---eeecCCCC
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVGND-HCL---RVFPHSNY 396 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~-~~~---~~~~h~~~ 396 (701)
..||...|..-+|.|.. .+++++.||.|++=.+... .+. ...+|.++
T Consensus 181 --------------------------~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~ 234 (559)
T KOG1334|consen 181 --------------------------ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGP 234 (559)
T ss_pred --------------------------ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCc
Confidence 25788888888888864 8999999999999876543 332 22349999
Q ss_pred eEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe----cCCC---cEEEEEEeeCCC-eEEEEecCCcEEEEECCCC
Q 005352 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----DIRQ---IVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 397 V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~----~~~~---~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~ 468 (701)
|.-++.-|.....|.+++.|+.+.-+|++........ .... ....|+..|... .+++|+.|..+++||.+.-
T Consensus 235 vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~ 314 (559)
T KOG1334|consen 235 VHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRI 314 (559)
T ss_pred cceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccch
Confidence 9999999978888999999999999999876533211 1222 467889999654 8999999999999998754
Q ss_pred eee----eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC--------------c-cceeeecccCC
Q 005352 469 HLE----LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--------------N-VIGKYKGLRRS 529 (701)
Q Consensus 469 ~~~----~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~--------------~-~~~~~~~~~~~ 529 (701)
... ....++.+.........|++++|+. ++.-++++-.|-.|+++... . ..+.|+++...
T Consensus 315 ~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh-~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~ 393 (559)
T KOG1334|consen 315 DKEENNGVLDKFCPHHLVEDDPVNITGLVYSH-DGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS 393 (559)
T ss_pred hhccccchhhhcCCccccccCcccceeEEecC-CccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccc
Confidence 322 1122333333334556799999998 67778888889999999532 1 12347888877
Q ss_pred CCeEEEEE-ecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 530 GNQLSACF-TSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 530 ~~v~~l~~-s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
..|..+-| -|...|+++|+.=|.|.||+-.+++
T Consensus 394 ~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 394 RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred cccceeeeccCccceEEecCccceEEEEecchhH
Confidence 78888875 5788999999999999999988776
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=6.4e-15 Score=135.79 Aligned_cols=281 Identities=19% Similarity=0.243 Sum_probs=189.5
Q ss_pred eeecCccccccccccceEEEEEccCcc---chhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCee
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRS---KELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~---~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~ 284 (701)
++++..+.+++|..+|+|.|..++... .+.......-..++|.++|+.|+|. ..+|++|+. |.|+-|...+...
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~e 93 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEE 93 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhh
Confidence 566777888999999999999875322 1222222223458999999999998 347888875 9999998876432
Q ss_pred eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
....+ ..|.+. .|.++-.-.-..|+++...|
T Consensus 94 s~~~K------------------------------------------------~lwe~~-~P~~~~~~evPeINam~ldP 124 (325)
T KOG0649|consen 94 SLATK------------------------------------------------RLWEVK-IPMQVDAVEVPEINAMWLDP 124 (325)
T ss_pred hccch------------------------------------------------hhhhhc-CccccCcccCCccceeEecc
Confidence 10000 000000 11111111234688888888
Q ss_pred CC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC------
Q 005352 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR------ 436 (701)
Q Consensus 365 ~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~------ 436 (701)
.. -++.++.|+.++-||+++++....+. |+++|.++.--. ....+++|+.||++|+||+++++.+..+...
T Consensus 125 ~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~l 203 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLL 203 (325)
T ss_pred CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhc
Confidence 66 66777799999999999999999997 999999998854 5668999999999999999999888665421
Q ss_pred -----CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 437 -----QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 437 -----~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
..|.+++. +..++++|+. ..+.+|.++.........+. .++..+.|. ...+++++..+.|
T Consensus 204 Rp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfpip---------a~v~~v~F~---~d~vl~~G~g~~v 268 (325)
T KOG0649|consen 204 RPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPIP---------ARVHLVDFV---DDCVLIGGEGNHV 268 (325)
T ss_pred CcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEecc---------cceeEeeee---cceEEEeccccce
Confidence 23555554 4558877764 67999999987765544332 345566664 4688888888899
Q ss_pred EEEeCCccceeeecccCCCCeEEEEEecC-CCEEEEEeCCCcEEEEe
Q 005352 512 RILQGPNVIGKYKGLRRSGNQLSACFTSD-GKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~sgs~Dg~I~iWd 557 (701)
.-|.+.......... .....++.+|+.. -++|-.++....+.|+.
T Consensus 269 ~~~~l~Gvl~a~ip~-~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 269 QSYTLNGVLQANIPV-ESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred eeeeeccEEEEeccC-CccceeeecccCCceEEEEecccceeeeeee
Confidence 999876544333222 2233455555433 34565667777777764
No 182
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.1e-14 Score=157.09 Aligned_cols=333 Identities=16% Similarity=0.243 Sum_probs=230.1
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCcee
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCI 298 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~ 298 (701)
...+..+.+|...+..+..... ..-..|.-.++|.++||+++++|+|..||.|.+|.--..+.
T Consensus 177 i~~~~~~~~~~v~~~~~~~~~~---~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-------------- 239 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPKHTKHTSSR---DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-------------- 239 (792)
T ss_pred EEEeeeEEEEEecccceeeccc---hhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc--------------
Confidence 4456667888876644221111 11234777899999999999999999999999997432110
Q ss_pred EEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcE
Q 005352 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTV 377 (701)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I 377 (701)
.....+.++-|...|.+++|+++| +|++|+..+.+
T Consensus 240 --------------------------------------------~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VL 275 (792)
T KOG1963|consen 240 --------------------------------------------DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVL 275 (792)
T ss_pred --------------------------------------------ccccceEEEecccccceeEEecCCceEeecccceEE
Confidence 002345567799999999999999 99999999999
Q ss_pred EEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe------------cCCCcEEEEEEe
Q 005352 378 RLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV------------DIRQIVTAVCYR 445 (701)
Q Consensus 378 ~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~------------~~~~~i~~i~~s 445 (701)
.+|.+.+++....-...++|..+.++| ++++.+....|+.|.+....+......+ ...+-.+.++++
T Consensus 276 v~Wq~~T~~kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 276 VLWQLETGKKQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred EEEeecCCCcccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence 999999998433334789999999999 9999999999999999877554332211 123457789999
Q ss_pred eCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC---CCCCeeEEEEecCCCCEEEEEEC--------C--CcEE
Q 005352 446 PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA---PCKRITGFQFLPQDSSKVMVSCA--------D--SQVR 512 (701)
Q Consensus 446 p~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---~~~~i~~l~~~p~~~~~l~~~s~--------d--g~I~ 512 (701)
|.-+.++..+..|.|.+||+-+................. ..-.++.++.+- .+.++++.-. | -.++
T Consensus 355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LK 433 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLK 433 (792)
T ss_pred CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEE
Confidence 977788888999999999999888776665554443322 233456666666 3777777532 3 3467
Q ss_pred EEeCCccceeeec-----ccCCCCeEEEEEecC-C-CEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEE
Q 005352 513 ILQGPNVIGKYKG-----LRRSGNQLSACFTSD-G-KHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIA 585 (701)
Q Consensus 513 iwd~~~~~~~~~~-----~~~~~~v~~l~~s~d-g-~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a 585 (701)
+|-.......+.. ..|...+...++.+. . ...+|++.||.++||-+.+.++..... .
T Consensus 434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~--s-------------- 497 (792)
T KOG1963|consen 434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS--S-------------- 497 (792)
T ss_pred EEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc--c--------------
Confidence 7876543333332 336666666666542 2 379999999999999997766422110 0
Q ss_pred ecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCC
Q 005352 586 IPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPA 645 (701)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~ 645 (701)
.|. +.. ....+..++..++|+-++ .+++.+.+..+.+|+..+...
T Consensus 498 -~W~------c~~---i~sy~k~~i~a~~fs~dG-----slla~s~~~~Itiwd~~~~~~ 542 (792)
T KOG1963|consen 498 -NWT------CKA---IGSYHKTPITALCFSQDG-----SLLAVSFDDTITIWDYDTKNE 542 (792)
T ss_pred -ceE------Eee---eeccccCcccchhhcCCC-----cEEEEecCCEEEEecCCChhh
Confidence 111 110 011235567778888873 456678999999999887433
No 183
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=2.3e-15 Score=142.17 Aligned_cols=204 Identities=18% Similarity=0.301 Sum_probs=158.3
Q ss_pred CCccCeEEEEEecCC------eEEEEECCCcEEEEECCCCe--e--eeee------cCCCCeEEEEEeeCCCCEEEEEEc
Q 005352 352 GHSGEILDLSWSKNN------YLLSASIDKTVRLWRVGNDH--C--LRVF------PHSNYVTCVHFNPVDDNYFISGSI 415 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~------~l~s~s~dg~I~iWd~~~~~--~--~~~~------~h~~~V~~l~f~p~~~~~l~sgs~ 415 (701)
.|.-+++.+.|.|+. +|+|++ -.+|+|.+.... . ...+ .+..++++..|+..+.+++.+.+.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 478899999999975 344433 479999987421 1 1111 267899999999999999999999
Q ss_pred CCcEEEEeCCCCcE----EEEecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCee
Q 005352 416 DGKVRIWAVLSCHV----VDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 416 dg~v~iwd~~~~~~----~~~~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
|-+..|||+.++.. .+++.|...|..|+|...+ +.|++.+.||.+++||++...... .+.. ......+..
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST----IIYE-~p~~~~pLl 246 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST----IIYE-DPSPSTPLL 246 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce----EEec-CCCCCCcce
Confidence 99999999998733 3678899999999999855 478889999999999998754321 1111 122256788
Q ss_pred EEEEecCCCCEEEEEECC-CcEEEEeCCccc-eeeecccCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCC
Q 005352 491 GFQFLPQDSSKVMVSCAD-SQVRILQGPNVI-GKYKGLRRSGNQLSACFTSD-GKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~d-g~I~iwd~~~~~-~~~~~~~~~~~v~~l~~s~d-g~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.++|++++.+++++-..| ..|.|.|++... .......|.+.|+.++|.|. ..+|+|++.|..+.|||+...-
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 899999999999887664 579999998543 34455569999999999995 4799999999999999998754
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.70 E-value=4.6e-16 Score=160.34 Aligned_cols=253 Identities=17% Similarity=0.254 Sum_probs=181.7
Q ss_pred ccCcceeeecCcccccc--ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 005352 202 KQGEGERVRLNEEDAMF--CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 202 ~~~~~~~~~~~~~~~~~--~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd 278 (701)
..++.+.+..+....++ .+..|.|-||++++..+-......+ | -....|+.+.|.| |...||.|+.||.|++|.
T Consensus 580 ~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~--l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr 656 (1012)
T KOG1445|consen 580 LPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPG--L-FNGTLVTDLHWDPFDDERLAVATDDGQINLWR 656 (1012)
T ss_pred CCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccc--c-ccCceeeecccCCCChHHeeecccCceEEEEE
Confidence 34667777778777765 6778999999998765443332222 1 1456799999999 678999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+..+..... ...|-..+.+|...|+
T Consensus 657 ~~a~gl~e~-------------------------------------------------------~~tPe~~lt~h~eKI~ 681 (1012)
T KOG1445|consen 657 LTANGLPEN-------------------------------------------------------EMTPEKILTIHGEKIT 681 (1012)
T ss_pred eccCCCCcc-------------------------------------------------------cCCcceeeecccceEE
Confidence 987642110 1145567889999999
Q ss_pred EEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec-
Q 005352 359 DLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD- 434 (701)
Q Consensus 359 ~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~- 434 (701)
.|.|+|-- .|++++.|-+|++||+.+.+....+. |.+.|..++|+| +++.+++.+.||+|++|..++++.-...+
T Consensus 682 slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~ 760 (1012)
T KOG1445|consen 682 SLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGK 760 (1012)
T ss_pred EEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCC
Confidence 99999965 99999999999999999988766665 999999999999 99999999999999999998875432211
Q ss_pred --CCCcEEEEEEeeCCCeEEEEecC----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 435 --IRQIVTAVCYRPDGQGGIVGSMM----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 435 --~~~~i~~i~~sp~g~~l~~gs~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
....-..|.|.-+|+++++.+.| ..|.+||..+-.... +......... .+.--.+.++.+-++++|-.|
T Consensus 761 gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~p---l~t~~lDvap--s~LvP~YD~Ds~~lfltGKGD 835 (1012)
T KOG1445|consen 761 GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRP---LYTQVLDVAP--SPLVPHYDYDSNVLFLTGKGD 835 (1012)
T ss_pred CCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCc---ceeeeecccC--ccccccccCCCceEEEecCCC
Confidence 11233457788899999987765 458888876543211 0111100000 011112344456677888889
Q ss_pred CcEEEEeCCc
Q 005352 509 SQVRILQGPN 518 (701)
Q Consensus 509 g~I~iwd~~~ 518 (701)
..|++|.+-.
T Consensus 836 ~~v~~yEv~~ 845 (1012)
T KOG1445|consen 836 RFVNMYEVIY 845 (1012)
T ss_pred ceEEEEEecC
Confidence 9999998753
No 185
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.70 E-value=4.1e-14 Score=152.58 Aligned_cols=266 Identities=28% Similarity=0.476 Sum_probs=199.8
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEeecCeeeeeecCCCCCCce
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDERLTEVDIPEIDPSC 297 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 297 (701)
...++.+++|+... .......+..|...|..++|+|++.++++++. |+.+++|++...
T Consensus 130 ~~~d~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 188 (466)
T COG2319 130 SSLDGTVKLWDLST------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--------------- 188 (466)
T ss_pred CCCCccEEEEEecC------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC---------------
Confidence 34488999998764 11222457789999999999999999999986 999999998763
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCC
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDK 375 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg 375 (701)
+.+..+.+|...|.+++|+|++ .+++++.|+
T Consensus 189 -----------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 189 -----------------------------------------------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221 (466)
T ss_pred -----------------------------------------------ceEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence 3445566799999999999988 444449999
Q ss_pred cEEEEECCCCeeee-eec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE-E-EEecCCCcEEEEEEeeCCCeE
Q 005352 376 TVRLWRVGNDHCLR-VFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-V-DWVDIRQIVTAVCYRPDGQGG 451 (701)
Q Consensus 376 ~I~iWd~~~~~~~~-~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~-~-~~~~~~~~i~~i~~sp~g~~l 451 (701)
.|++||...+..+. .+. |...+ ...|+| ++.++++++.|+.+++|++..... . ....|...+.++.|.|++..+
T Consensus 222 ~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 222 TIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred cEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 99999998777777 344 66664 338998 778899999999999999987664 3 334678899999999988888
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE-ECCCcEEEEeCCccceeeecccCCC
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQVRILQGPNVIGKYKGLRRSG 530 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~ 530 (701)
++++.++.+.+|++.......... ...+...+..+.+ +.++..++.+ ..|+.+.+|+..... .........
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~ 371 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLSSLT------LKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLEGHS 371 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEEEee------ecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc-eeEEecCCc
Confidence 889999889999888766543222 2234446888888 5333555555 678999999988666 222222222
Q ss_pred CeEEEEEecCCCEEEE-EeCCCcEEEEeCCCCCC
Q 005352 531 NQLSACFTSDGKHIVS-AGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 531 ~v~~l~~s~dg~~l~s-gs~Dg~I~iWd~~~~~~ 563 (701)
.+..+.+.+ ...++. +..++.+.+|+......
T Consensus 372 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 372 NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred eEEEEEECC-CCCEEEEecCCCceEEEecccCee
Confidence 388899988 544444 68899999999887763
No 186
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=7.6e-15 Score=162.34 Aligned_cols=256 Identities=14% Similarity=0.206 Sum_probs=176.7
Q ss_pred eeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 245 EIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
.++.|...|..++.++. +.+++|||.||+|++||......-...
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s----------------------------------- 1087 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGS----------------------------------- 1087 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcce-----------------------------------
Confidence 46679999999998775 599999999999999998764311000
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe-------eeeeec--C
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-------CLRVFP--H 393 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~-------~~~~~~--h 393 (701)
-+...++......+.++...+++ .++.++.||.|++.++...+ +..... .
T Consensus 1088 --------------------~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~ 1147 (1431)
T KOG1240|consen 1088 --------------------ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKK 1147 (1431)
T ss_pred --------------------eeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccC
Confidence 01122333356788999999988 99999999999999987621 111111 2
Q ss_pred CCC-eEEEEEeeCCCC-EEEEEEcCCcEEEEeCCCCcEE---EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC
Q 005352 394 SNY-VTCVHFNPVDDN-YFISGSIDGKVRIWAVLSCHVV---DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 394 ~~~-V~~l~f~p~~~~-~l~sgs~dg~v~iwd~~~~~~~---~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
.+. |..-+|...... .++.+...+.|..||+++.... +.....+.|++++.+|.++++++|+..|.+.+||++=+
T Consensus 1148 ~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1148 DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred CCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 233 334445443344 6778888899999999987644 23334578999999999999999999999999999865
Q ss_pred eeeeeeeEEeecccCCCCCCeeEEEEecCCC--CEEEEEE--CCCcEEEEeCCccceeeeccc-----------------
Q 005352 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDS--SKVMVSC--ADSQVRILQGPNVIGKYKGLR----------------- 527 (701)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~--~~l~~~s--~dg~I~iwd~~~~~~~~~~~~----------------- 527 (701)
.... .....+..+|..+..+|..+ ...++++ ..+.|.+|++.+.........
T Consensus 1228 ~~i~-------sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~ 1300 (1431)
T KOG1240|consen 1228 VPIL-------SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDAR 1300 (1431)
T ss_pred ceee-------cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCC
Confidence 4432 23344456788888877544 4444444 478899999875443332211
Q ss_pred --CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 528 --RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 528 --~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+.-....+++..-+.++++|+.|..|+.||...++
T Consensus 1301 kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1301 KPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred CCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 11122334444456789999999999999988876
No 187
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.4e-15 Score=148.60 Aligned_cols=293 Identities=11% Similarity=0.123 Sum_probs=205.7
Q ss_pred cccCcceeee--cCccccccccccceEEEEEccCccchhhhcccCcee--ccCCCcEEEEEEccCCCEEEEEeCCCcEEE
Q 005352 201 DKQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI--QAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (701)
Q Consensus 201 ~~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l--~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 276 (701)
.|-+.++++. -++..++.|+.|..++||+..... .....+.-.+ ..|...|.|++|....+.|.+|+.+++|.+
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~--~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELM--VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHH--hhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 4566666654 456788999999999999875321 1111111112 347789999999999999999999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
.|+++.+.+..+. -....+.
T Consensus 132 HDiEt~qsi~V~~------------------------------------------------------------~~~~~~~ 151 (609)
T KOG4227|consen 132 HDIETKQSIYVAN------------------------------------------------------------ENNNRGD 151 (609)
T ss_pred eecccceeeeeec------------------------------------------------------------ccCcccc
Confidence 9998876332111 0123458
Q ss_pred eEEEEEecCC-eEEEEECCCcEEEEECCCCe-e---eeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-
Q 005352 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-C---LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV- 430 (701)
Q Consensus 357 I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~-~---~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~- 430 (701)
|+.+..+|.. .|++.+.++.|.+||++..+ . +..-........+.|+|....+|++.+..+-+.+||++..+..
T Consensus 152 VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~ 231 (609)
T KOG4227|consen 152 VYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV 231 (609)
T ss_pred eeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchH
Confidence 9999999976 99999999999999998765 2 2222355677889999988999999999999999999876432
Q ss_pred -E---EecCCC---cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 431 -D---WVDIRQ---IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 431 -~---~~~~~~---~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
. ...... .-..+.|+|+|+.|++--....-.+||+-...+..-.. ............|.+++|.. ...++
T Consensus 232 ~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~--D~~v~ 308 (609)
T KOG4227|consen 232 YQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFID--DYTVA 308 (609)
T ss_pred HhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeec--ceeee
Confidence 1 112222 23678899999988877665556678887654432110 00000111234567778875 35599
Q ss_pred EEECCCcEEEEeCCccc-----------------------eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 504 VSCADSQVRILQGPNVI-----------------------GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~-----------------------~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
+|+.+-.|++|.+.... ......+|..-++.+.|+|...+|++.+-...++||.-
T Consensus 309 tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 309 TGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 99999999999864210 01112347888899999999999999999999999963
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.68 E-value=3.4e-15 Score=147.26 Aligned_cols=293 Identities=18% Similarity=0.261 Sum_probs=196.0
Q ss_pred CCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 250 DGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 250 ~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
..+|..+.|.++.. .|||||.|..|+||.+..+..-. +...+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~------------------------------~~~~V------- 55 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG------------------------------GDMKV------- 55 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC------------------------------CceeE-------
Confidence 35899999999766 99999999999999998764110 00000
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECC--------C-----C---eeeeee
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG--------N-----D---HCLRVF 391 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~--------~-----~---~~~~~~ 391 (701)
+.+..+..|...|+++.|+|+| .|++|+.+|.|.+|... + . ...+.+
T Consensus 56 ----------------~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~l 119 (434)
T KOG1009|consen 56 ----------------EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVL 119 (434)
T ss_pred ----------------EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEe
Confidence 2345677899999999999999 99999999999999765 2 1 111122
Q ss_pred -cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE-ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCe
Q 005352 392 -PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (701)
Q Consensus 392 -~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~ 469 (701)
.|...|..++|+| +++++++++.|+.+++||+..+++... .+|...+..++|.|-++++++-+.|...+.+.+...+
T Consensus 120 r~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 120 RGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred cccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeee
Confidence 2889999999999 999999999999999999999998854 4688899999999999999999999988888877655
Q ss_pred eeeeeeEE-eeccc--------------CCCCCCeeEEEEecCCCCEEEEEEC----CC-----cEEEEeCCcccee-ee
Q 005352 470 LELDAEIC-VHSKK--------------KAPCKRITGFQFLPQDSSKVMVSCA----DS-----QVRILQGPNVIGK-YK 524 (701)
Q Consensus 470 ~~~~~~~~-~~~~~--------------~~~~~~i~~l~~~p~~~~~l~~~s~----dg-----~I~iwd~~~~~~~-~~ 524 (701)
........ ..... .....-...++|.| ++.++++... .+ ..++|+.+..... ..
T Consensus 199 ~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~ 277 (434)
T KOG1009|consen 199 VIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR 277 (434)
T ss_pred eeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceee
Confidence 44332211 11100 00112234567888 6777776543 22 3455654432221 12
Q ss_pred cccCCCCeEEEEEec------------------CCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEe
Q 005352 525 GLRRSGNQLSACFTS------------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAI 586 (701)
Q Consensus 525 ~~~~~~~v~~l~~s~------------------dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 586 (701)
......+...+.|+| -+..++.++. ..|+|||.++.... ..+
T Consensus 278 lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~--------~~v----------- 337 (434)
T KOG1009|consen 278 LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPL--------AVV----------- 337 (434)
T ss_pred cCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccce--------EEE-----------
Confidence 222334444444443 2234455554 47999997765421 001
Q ss_pred cCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccC
Q 005352 587 PWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCAT 637 (701)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~ 637 (701)
...+...++.++|+++ +..++..|.||-..+
T Consensus 338 ----------------~nihy~~iTDiaws~d----g~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 338 ----------------DNIHYSAITDIAWSDD----GSVLLVSSTDGFCSL 368 (434)
T ss_pred ----------------eeeeeeeecceeecCC----CcEEEEeccCCceEE
Confidence 1122445667788886 566666777777653
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=9.1e-15 Score=159.25 Aligned_cols=295 Identities=17% Similarity=0.188 Sum_probs=200.2
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
..+-..+.|+|-...++++...-.|+|||.+.++.+..|....
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~------------------------------------- 1106 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA------------------------------------- 1106 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC-------------------------------------
Confidence 3356779999999999999877899999999887654443211
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC---eEEEEECCCcEEEEECC-C----Ceeeeeec--------C
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVG-N----DHCLRVFP--------H 393 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~---~l~s~s~dg~I~iWd~~-~----~~~~~~~~--------h 393 (701)
.....|+.+.+-... ++++|+.||.|+||+-- . .+.+..+. .
T Consensus 1107 ----------------------~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~ 1164 (1387)
T KOG1517|consen 1107 ----------------------FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGA 1164 (1387)
T ss_pred ----------------------CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccC
Confidence 123567888876543 99999999999999642 2 23333221 1
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec--CCCcEEEEEEe-eCCCeEEEEecCCcEEEEECCCCee
Q 005352 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD--IRQIVTAVCYR-PDGQGGIVGSMMGDCRFYNVSDNHL 470 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~i~~i~~s-p~g~~l~~gs~dg~v~i~d~~~~~~ 470 (701)
.+.-.-+.|....+ +|++++.-..|+|||....+++.-+. ....|+++.-+ +.|+.+++|..||.|++||.+....
T Consensus 1165 r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1165 RGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP 1243 (1387)
T ss_pred CCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc
Confidence 11123456777444 55555557889999999888775443 34557777544 3579999999999999999987543
Q ss_pred eeeeeEEeecccCCCCCC--eeEEEEecCCCCEEEEEECCCcEEEEeCCc-cceee-ecccC---CCCeEEEEEecCCCE
Q 005352 471 ELDAEICVHSKKKAPCKR--ITGFQFLPQDSSKVMVSCADSQVRILQGPN-VIGKY-KGLRR---SGNQLSACFTSDGKH 543 (701)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~--i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~-~~~~~-~~~~~---~~~v~~l~~s~dg~~ 543 (701)
.. .......|... |..+.+.+++-..|++|+.+|.|++||++. ....+ ....| .+..+++..+++...
T Consensus 1244 ds-----~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1244 DS-----LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred cc-----cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCe
Confidence 21 11112223333 999999885556799999999999999986 22222 22112 235899999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccC
Q 005352 544 IVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLG 623 (701)
Q Consensus 544 l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~ 623 (701)
||+|+. +.|+||++...+... ++....| ......++..++|+|. .
T Consensus 1319 iAsGs~-q~ikIy~~~G~~l~~------~k~n~~F------------------------~~q~~gs~scL~FHP~----~ 1363 (1387)
T KOG1517|consen 1319 IASGSA-QLIKIYSLSGEQLNI------IKYNPGF------------------------MGQRIGSVSCLAFHPH----R 1363 (1387)
T ss_pred eeecCc-ceEEEEecChhhhcc------cccCccc------------------------ccCcCCCcceeeecch----h
Confidence 999998 999999998766321 1111111 1111234577889997 4
Q ss_pred ccccccCCCCcccCCCCccCC
Q 005352 624 QEYVFESFPKGCATWPEEKLP 644 (701)
Q Consensus 624 ~~~~~~s~d~~~~~W~~~~~~ 644 (701)
-.++.++.|..|.++..++..
T Consensus 1364 ~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred HhhhhccCCceEEEeecCCcC
Confidence 456677889999998877654
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=6.7e-15 Score=141.07 Aligned_cols=241 Identities=18% Similarity=0.290 Sum_probs=179.8
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
-..+|+|.+|++|++.+|.+-....|.||.....+.-
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w------------------------------------------- 45 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLW------------------------------------------- 45 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCc-------------------------------------------
Confidence 4578999999999999999999999999997665311
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCC-Cee---eeeecCCCCeEEEEEe
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN-DHC---LRVFPHSNYVTCVHFN 403 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~-~~~---~~~~~h~~~V~~l~f~ 403 (701)
++.+++..|...|+.|+|+|.. .|++++.|..-++|.... ++- +..+.++..++++.|+
T Consensus 46 ----------------~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws 109 (361)
T KOG1523|consen 46 ----------------EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWS 109 (361)
T ss_pred ----------------eeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeec
Confidence 5678889999999999999998 999999999999999843 332 3334589999999999
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCCCcEE-----EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee-----
Q 005352 404 PVDDNYFISGSIDGKVRIWAVLSCHVV-----DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD----- 473 (701)
Q Consensus 404 p~~~~~l~sgs~dg~v~iwd~~~~~~~-----~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~----- 473 (701)
| .++.|++|+....|.||-.....-- ....++..|+++.|+|++-+|++|+.|+.+++|..--......
T Consensus 110 P-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~p 188 (361)
T KOG1523|consen 110 P-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTP 188 (361)
T ss_pred C-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCC
Confidence 9 9999999999999999977654322 2234578899999999999999999999999997532111000
Q ss_pred --eeEEe---ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeee-cccCCCCeEEEEEecCCCEEEEE
Q 005352 474 --AEICV---HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK-GLRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 474 --~~~~~---~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~sg 547 (701)
.++.. ........+.+..+.|+| ++..|+-.+.|+.+.+-|.....+... .....-+..++.|-.+. .++.+
T Consensus 189 Wgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~a 266 (361)
T KOG1523|consen 189 WGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAA 266 (361)
T ss_pred CccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeec
Confidence 00000 001114567899999999 799999999999999999765432221 11133566777775443 34555
Q ss_pred eCCC
Q 005352 548 GEDS 551 (701)
Q Consensus 548 s~Dg 551 (701)
+.|.
T Consensus 267 g~~c 270 (361)
T KOG1523|consen 267 GYDC 270 (361)
T ss_pred CCCC
Confidence 5553
No 191
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=9.4e-15 Score=138.09 Aligned_cols=262 Identities=16% Similarity=0.238 Sum_probs=186.1
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCC-----CEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCc
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG-----QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPS 296 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-----~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~ 296 (701)
.+.|.|-.++....++.... . -.|.-+++.+-|.|+. .+|||.+. .+|+|.+...+.......
T Consensus 72 ~Nkvqiv~ld~~s~e~~~~a---~-fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~------ 139 (364)
T KOG0290|consen 72 NNKVQIVQLDEDSGELVEDA---N-FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQS------ 139 (364)
T ss_pred CCeeEEEEEccCCCceeccC---C-CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhh------
Confidence 46777777764443332211 1 2488899999999975 35777764 799999875321111000
Q ss_pred eeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECC
Q 005352 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASID 374 (701)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~d 374 (701)
. + ...+-..+..+++++.|+.-. ++.++|-|
T Consensus 140 ---~----------L----------------------------------~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 140 ---V----------L----------------------------------NNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred ---h----------h----------------------------------ccCcccccCCcccccccccCCcceeEeeccc
Confidence 0 0 000113366789999998865 89999999
Q ss_pred CcEEEEECCCCe----eeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe---c-CCCcEEEEEEee
Q 005352 375 KTVRLWRVGNDH----CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---D-IRQIVTAVCYRP 446 (701)
Q Consensus 375 g~I~iWd~~~~~----~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~---~-~~~~i~~i~~sp 446 (701)
-+..|||++++. ..+.+.|...|..|+|.....+.|++.+.||.||+||++...--.++ . ...+...++|++
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence 999999999973 34456699999999999755678999999999999999976533322 1 246788899988
Q ss_pred C-CCeEEEEec-CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce---
Q 005352 447 D-GQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG--- 521 (701)
Q Consensus 447 ~-g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~--- 521 (701)
. -+++++-.. ...|.+.|++..... ......|...|++++|.|....+|++++.|.++.|||+.....
T Consensus 253 qDpnymATf~~dS~~V~iLDiR~P~tp-------va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 253 QDPNYMATFAMDSNKVVILDIRVPCTP-------VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG 325 (364)
T ss_pred CCchHHhhhhcCCceEEEEEecCCCcc-------eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence 4 456666444 456999999875432 1234567889999999999999999999999999999875443
Q ss_pred --eeecccCCCCeEEEEEec-CCCEEEEEeC
Q 005352 522 --KYKGLRRSGNQLSACFTS-DGKHIVSAGE 549 (701)
Q Consensus 522 --~~~~~~~~~~v~~l~~s~-dg~~l~sgs~ 549 (701)
........+.|+.+.|++ ...+|+.+..
T Consensus 326 ~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 326 EDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred CCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 111223567899999996 5567777754
No 192
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.66 E-value=5.2e-15 Score=139.64 Aligned_cols=236 Identities=19% Similarity=0.243 Sum_probs=171.2
Q ss_pred eEEEEEccCccch--hhhcccCceec-cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeee-eeecCCCCCCceeE
Q 005352 224 RVKVYHCKKRSKE--LSALYKGQEIQ-AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL-TEVDIPEIDPSCIY 299 (701)
Q Consensus 224 ~v~vw~~~~~~~~--~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~-~~~~~~~~~~~~~~ 299 (701)
.+.||.+.+.... ...+.....|. .|-+.|.|+.|.|++..||+-. |..|.+|++.++..+ ..+..+.
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~------- 165 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE------- 165 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccc-------
Confidence 4689998653322 11122222232 4667999999999999999887 789999999887531 1111100
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC--CeEEEEECCCcE
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--NYLLSASIDKTV 377 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~~l~s~s~dg~I 377 (701)
-.+|....++-+|+|. +.-+....|+++
T Consensus 166 --------------------------------------------------s~e~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 166 --------------------------------------------------SAEMRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred --------------------------------------------------cccccceecccccCCCCccceEEEeCCCcE
Confidence 0125566778899983 455555678999
Q ss_pred EEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc--EEEEecCCCcEEEEEEeeC-CCeEE
Q 005352 378 RLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVTAVCYRPD-GQGGI 452 (701)
Q Consensus 378 ~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~i~~i~~sp~-g~~l~ 452 (701)
..||+++.++...+. |...|..+.|+|....+|++|+.||.|+|||.++.+ +....+|...|.++.|+|. .+.++
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEE
Confidence 999999998887776 888999999999666789999999999999998754 3366788999999999994 56888
Q ss_pred EEecCCcEEEEECCCCeeeeee---------------------eEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 453 VGSMMGDCRFYNVSDNHLELDA---------------------EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 453 ~gs~dg~v~i~d~~~~~~~~~~---------------------~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
+|+.|..|.+|....-.-.... +-........|...|.+++|+..++-++++-+.||.+
T Consensus 276 s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 276 SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceE
Confidence 9999999999976432110000 0001112345678899999999899999999999999
Q ss_pred EEEeCC
Q 005352 512 RILQGP 517 (701)
Q Consensus 512 ~iwd~~ 517 (701)
.|=.+.
T Consensus 356 iIs~V~ 361 (370)
T KOG1007|consen 356 IISSVP 361 (370)
T ss_pred EeecCC
Confidence 886654
No 193
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=9.1e-16 Score=156.08 Aligned_cols=242 Identities=21% Similarity=0.352 Sum_probs=164.2
Q ss_pred hcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccc
Q 005352 239 ALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKI 318 (701)
Q Consensus 239 ~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (701)
.+-..++|.||+|.|.|++|+.+|.+||+|+.|-.+.|||...-+.
T Consensus 39 rL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl---------------------------------- 84 (758)
T KOG1310|consen 39 RLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL---------------------------------- 84 (758)
T ss_pred hcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------------------------
Confidence 3444578999999999999999999999999999999999875433
Q ss_pred eeeEEeeecCCccEEEcCCccccccCCCeEEE-cCCccCeEEEEEecCC---eEEEEECCCcEEEEECCCC---------
Q 005352 319 SILKSLRRTSESACVVFPPKVFRILEKPLHEF-HGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVGND--------- 385 (701)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~--------- 385 (701)
++.+ .||...|.+++|-|.. ++++|+.|..|+++|+...
T Consensus 85 ----------------------------lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~ 136 (758)
T KOG1310|consen 85 ----------------------------LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM 136 (758)
T ss_pred ----------------------------eeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc
Confidence 2222 5899999999999953 9999999999999999752
Q ss_pred -eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-----------EecCCCcEEEEEEeeC-CCeE
Q 005352 386 -HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-----------WVDIRQIVTAVCYRPD-GQGG 451 (701)
Q Consensus 386 -~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-----------~~~~~~~i~~i~~sp~-g~~l 451 (701)
.....+. |...|..|+..|...+.|.+++.||+|+-||++...... .....-...++.++|. ..+|
T Consensus 137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~l 216 (758)
T KOG1310|consen 137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYL 216 (758)
T ss_pred cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceE
Confidence 2223333 888999999999556999999999999999998743221 1111234678889984 4688
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEeecc-cCCCCCCeeEEE-EecCCCCEEEEEECCCcEEEEeCCccceeeecccCC
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSK-KKAPCKRITGFQ-FLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRS 529 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~-~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 529 (701)
++|+.+-..++||.+........ ... .........++. |+|. .+ ...+|.+. ...
T Consensus 217 aVGgsdpfarLYD~Rr~lks~~s----~~~~~~~pp~~~~cv~yf~p~---hl--kn~~gn~~--------------~~~ 273 (758)
T KOG1310|consen 217 AVGGSDPFARLYDRRRVLKSFRS----DGTMNTCPPKDCRCVRYFSPG---HL--KNSQGNLD--------------RYI 273 (758)
T ss_pred EecCCCchhhhhhhhhhccCCCC----CccccCCCCcccchhheecCc---cc--cCcccccc--------------cce
Confidence 99999999999997543211100 000 000111111221 2231 00 00011000 011
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 005352 530 GNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPA 565 (701)
Q Consensus 530 ~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~ 565 (701)
..++-+.|+|+|.-|+..-.--.||++|++.++.+.
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 235778899999766655445589999998877543
No 194
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=1.4e-14 Score=160.41 Aligned_cols=306 Identities=12% Similarity=0.143 Sum_probs=201.2
Q ss_pred ceeeecccCcceeeecCc---cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCC
Q 005352 196 LACVVDKQGEGERVRLNE---EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG 272 (701)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 272 (701)
++++..|...+.++..+. ..+++|+.||+||||+..+...+........++..-.+.+.++.+.+.++.+|.++.||
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 566667777666554433 56888999999999999876665444444444555678899999999999999999999
Q ss_pred cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcC
Q 005352 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (701)
Q Consensus 273 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (701)
.|++.+++........ ..+ . .+.....
T Consensus 1121 ~v~~~~id~~~~~~~~------~~~--------------------------~---------------------ri~n~~~ 1147 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRV------ATQ--------------------------V---------------------RIPNLKK 1147 (1431)
T ss_pred eEEEEEccccccccce------eee--------------------------e---------------------ecccccC
Confidence 9999998763100000 000 0 0000011
Q ss_pred CccCeEEE-EEec--CC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC
Q 005352 353 HSGEILDL-SWSK--NN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (701)
Q Consensus 353 h~~~I~~l-~~s~--~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~ 425 (701)
.+.+.++ ++.. .. .|+.+...+.|..||++........+ ..+.|++++.+| .++++++|...|.+.+||++
T Consensus 1148 -~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1148 -DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred -CCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEee
Confidence 1112222 2222 12 67788888999999999887777665 458899999999 89999999999999999999
Q ss_pred CCcEEEEe--cCCCcEEEEEEeeCC---CeEEEE-e-cCCcEEEEECCCCeeeeeeeEE-----eecccCC----CCCCe
Q 005352 426 SCHVVDWV--DIRQIVTAVCYRPDG---QGGIVG-S-MMGDCRFYNVSDNHLELDAEIC-----VHSKKKA----PCKRI 489 (701)
Q Consensus 426 ~~~~~~~~--~~~~~i~~i~~sp~g---~~l~~g-s-~dg~v~i~d~~~~~~~~~~~~~-----~~~~~~~----~~~~i 489 (701)
=+..+... .+..+|+.++.+|-. ...+++ . ..+.|.+|++.++......-.. +...... ....+
T Consensus 1226 F~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~ 1305 (1431)
T KOG1240|consen 1226 FRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSL 1305 (1431)
T ss_pred cCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcc
Confidence 88777433 345678888887733 344444 3 4788999999988654332221 0000000 01111
Q ss_pred --eEEEEecCCCCEEEEEECCCcEEEEeCCcccee---------------------------------------------
Q 005352 490 --TGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK--------------------------------------------- 522 (701)
Q Consensus 490 --~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~--------------------------------------------- 522 (701)
....+. ..+..+++|+.|..|+.||.......
T Consensus 1306 ~~~~~~~~-~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~ 1384 (1431)
T KOG1240|consen 1306 AGISCGVC-EKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEAL 1384 (1431)
T ss_pred cceeeecc-cCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhc
Confidence 112222 25688999999999999994310000
Q ss_pred -----------eecccCCCCeEEEEEecC-CCEEEEEeCCCcEEEEe
Q 005352 523 -----------YKGLRRSGNQLSACFTSD-GKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 523 -----------~~~~~~~~~v~~l~~s~d-g~~l~sgs~Dg~I~iWd 557 (701)
.....|..+|+++++... ..+|++++.||.|+||.
T Consensus 1385 ~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1385 RENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 001126677888877543 45889999999999994
No 195
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=5.6e-15 Score=150.42 Aligned_cols=225 Identities=20% Similarity=0.299 Sum_probs=164.8
Q ss_pred HHhHHhhhccceeeecccCcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc--C
Q 005352 186 KKRWFSRLRSLACVVDKQGEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--D 261 (701)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--d 261 (701)
...|++++..-+.+..|.+-++++..+ +..++.|+.|.++.|||.-.. +.+ ...-.||.+.|.+++|-| +
T Consensus 33 ~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~-Kll-----hsI~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 33 NSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY-KLL-----HSISTGHTANIFSVKFVPYTN 106 (758)
T ss_pred ccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhc-cee-----eeeecccccceeEEeeeccCC
Confidence 356888888888888899999988765 457788999999999996521 111 112357999999999998 4
Q ss_pred CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCcccc
Q 005352 262 GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFR 341 (701)
Q Consensus 262 g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (701)
.++++||..|..|+++|+...+.-..- .
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d----------------------------------------------------~ 134 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMD----------------------------------------------------H 134 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccc----------------------------------------------------c
Confidence 678999999999999999764310000 0
Q ss_pred ccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCee-------eeee----cCCCCeEEEEEeeCCCC
Q 005352 342 ILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHC-------LRVF----PHSNYVTCVHFNPVDDN 408 (701)
Q Consensus 342 ~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~-------~~~~----~h~~~V~~l~f~p~~~~ 408 (701)
-.+.+.+.+..|...|.-|+..|++ .+.+++.||+|+-+|++.... ...+ ..--...|+.++|.+..
T Consensus 135 ~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~ 214 (758)
T KOG1310|consen 135 GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPY 214 (758)
T ss_pred CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCc
Confidence 0114456667899999999999998 899999999999999986321 1111 12235679999998999
Q ss_pred EEEEEEcCCcEEEEeCCCC------------------cEEEEec--C----C-------CcEEEEEEeeCCCeEEEEecC
Q 005352 409 YFISGSIDGKVRIWAVLSC------------------HVVDWVD--I----R-------QIVTAVCYRPDGQGGIVGSMM 457 (701)
Q Consensus 409 ~l~sgs~dg~v~iwd~~~~------------------~~~~~~~--~----~-------~~i~~i~~sp~g~~l~~gs~d 457 (701)
+|++|+.|-..++||.+.. .++..+. | . ..++-++|+|+|..|++.-..
T Consensus 215 ~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~g 294 (758)
T KOG1310|consen 215 YLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGG 294 (758)
T ss_pred eEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCC
Confidence 9999999999999995321 1121111 1 0 125678899999999988777
Q ss_pred CcEEEEECCCC
Q 005352 458 GDCRFYNVSDN 468 (701)
Q Consensus 458 g~v~i~d~~~~ 468 (701)
-.|+++|+...
T Consensus 295 EhVYlfdvn~~ 305 (758)
T KOG1310|consen 295 EHVYLFDVNED 305 (758)
T ss_pred eEEEEEeecCC
Confidence 78999998643
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=2.6e-14 Score=154.13 Aligned_cols=268 Identities=18% Similarity=0.202 Sum_probs=188.4
Q ss_pred cEEEEECCCC-eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE--E-----EEecCCCcEEEEEEeeC
Q 005352 376 TVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--V-----DWVDIRQIVTAVCYRPD 447 (701)
Q Consensus 376 ~I~iWd~~~~-~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~--~-----~~~~~~~~i~~i~~sp~ 447 (701)
.+.+|++... .+...+.-...|+|+.|+|.+.++++.|+.+|.|.+||++.+.. . ....|..+++.+.|..+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 7899999877 66667778899999999999999999999999999999987654 2 34468889999999875
Q ss_pred CCe--EEEEecCCcEEEEECCCCeeeeeeeEEeec----ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc-
Q 005352 448 GQG--GIVGSMMGDCRFYNVSDNHLELDAEICVHS----KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI- 520 (701)
Q Consensus 448 g~~--l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~----~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~- 520 (701)
..- +++++.||.|..|+++.-....+....-.. ........++++.|.+.+...+++|+.+|.|.--.-....
T Consensus 303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence 544 999999999999998865543322111111 1123456789999999999999999999999884433221
Q ss_pred ---eeeec----ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCC
Q 005352 521 ---GKYKG----LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKC 593 (701)
Q Consensus 521 ---~~~~~----~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 593 (701)
..+++ ..|.++|.++.++|=+..++..+.|-+|+||.-.....|.. .+ .
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~-------~~--~--------------- 438 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL-------SL--D--------------- 438 (555)
T ss_pred cccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcch-------hh--h---------------
Confidence 11222 34889999999999876666555599999998663321110 00 0
Q ss_pred CCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCC--Cccccccccchhhhhhhhhcccc-cc
Q 005352 594 GNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPA--LSQLSSASALHKSQYKFLKSSCL-CT 670 (701)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~ 670 (701)
.....+..++|||.+ ...|++...+|.+.+||...-.. +...... ..+. .+
T Consensus 439 -----------~~~~~v~~vaWSptr---pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~------------~~~l~~~ 492 (555)
T KOG1587|consen 439 -----------SSPDYVTDVAWSPTR---PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC------------SPALTRV 492 (555)
T ss_pred -----------hccceeeeeEEcCcC---ceEEEEEcCCCceehhhhhccccCCccccccc------------cccccee
Confidence 011124445666642 45788888999999999754432 2221111 1222 33
Q ss_pred cccCCCccEEEEecCCCeEeEEee
Q 005352 671 TSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 671 ~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
.+++. |++|+.|+..|.|.+|..
T Consensus 493 ~~s~~-g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 493 RWSPN-GKLLAVGDANGTTHILKL 515 (555)
T ss_pred ecCCC-CcEEEEecCCCcEEEEEc
Confidence 45566 999999999999999974
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.64 E-value=7e-15 Score=149.29 Aligned_cols=183 Identities=15% Similarity=0.314 Sum_probs=141.8
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
-..+..|.+.|.+-.|+|+| -|++++.||.|++|.- +|-.-.++ +...+|.|++|.|...+.+++. .+.+.|=-+
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL 173 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPL 173 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeec
Confidence 34567899999999999999 9999999999999984 44333333 3678899999999444445443 355666666
Q ss_pred CC-CcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 425 LS-CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 425 ~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
.. .++++|..|.+-|.++.|+|..+.+++|+.|-..++||-....+. ....|..+|++++|.| + ..++
T Consensus 174 ~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf---------~S~~~ey~ITSva~np-d-~~~~ 242 (737)
T KOG1524|consen 174 AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLF---------TSAAEEYAITSVAFNP-E-KDYL 242 (737)
T ss_pred ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccc---------cCChhccceeeeeecc-c-ccee
Confidence 53 467799999999999999999999999999999999998754331 2455778999999999 4 6666
Q ss_pred EEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 005352 504 VSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYM 555 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i 555 (701)
.++.+ ++| +. ....+.|..++||+||..++.|...|.+.+
T Consensus 243 v~S~n-t~R----------~~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 243 LWSYN-TAR----------FS-SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeee-eee----------ec-CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 66543 333 21 125689999999999999999999998755
No 198
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.9e-15 Score=150.85 Aligned_cols=308 Identities=19% Similarity=0.175 Sum_probs=223.3
Q ss_pred HhhhccceeeecccCcceeeecCc--cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC--CCEE
Q 005352 190 FSRLRSLACVVDKQGEGERVRLNE--EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD--GQYL 265 (701)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~L 265 (701)
.++++...-+..|.+.++.+.++. +.+++++.|..|.+|+|......+. -..||...|...+|-|. .+.+
T Consensus 129 vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~------f~SGH~~NvfQaKFiP~s~d~ti 202 (559)
T KOG1334|consen 129 VQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS------FESGHCNNVFQAKFIPFSGDRTI 202 (559)
T ss_pred HHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc------cccccccchhhhhccCCCCCcCc
Confidence 333433333456888888888875 5778899999999999976543332 24579999999999884 5679
Q ss_pred EEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCC
Q 005352 266 ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345 (701)
Q Consensus 266 asgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (701)
++++.||.|++=.+...... .
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~-----------------------------------------------------------e 223 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYV-----------------------------------------------------------E 223 (559)
T ss_pred eeccccCceeeeeeccccce-----------------------------------------------------------e
Confidence 99999999998776543211 1
Q ss_pred CeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec----CCC---CeEEEEEeeCCCCEEEEEEcC
Q 005352 346 PLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP----HSN---YVTCVHFNPVDDNYFISGSID 416 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~----h~~---~V~~l~f~p~~~~~l~sgs~d 416 (701)
....+..|.+.|..++.-|.. .|++++.|+.+.-.|++++.+...+. +.. ....++.+|.+.+.|++|+.|
T Consensus 224 ~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~d 303 (559)
T KOG1334|consen 224 NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSD 303 (559)
T ss_pred cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChh
Confidence 123445699999999999987 89999999999999999876554442 333 678899999788899999999
Q ss_pred CcEEEEeCCCCcEE-------EEe------cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee--eeee---EEe
Q 005352 417 GKVRIWAVLSCHVV-------DWV------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE--LDAE---ICV 478 (701)
Q Consensus 417 g~v~iwd~~~~~~~-------~~~------~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~--~~~~---~~~ 478 (701)
-.+++||.+.-... .+. ...-.|++++|+.++.-|++...|-.|+++.-..+... .... ...
T Consensus 304 qf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~ 383 (559)
T KOG1334|consen 304 QFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYV 383 (559)
T ss_pred hhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhcc
Confidence 99999998753211 111 22346999999999999999999999999954433220 0000 001
Q ss_pred ecccCC--CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 479 HSKKKA--PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 479 ~~~~~~--~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
....+. ....|.++.|--....++++|+.-|.|.||+.++........+...-|+|+.=+|--..||+.+-|.-|+||
T Consensus 384 k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 384 KRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIW 463 (559)
T ss_pred chhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeee
Confidence 111122 223477888764478999999999999999988654433333334488999999999999999999999999
Q ss_pred eCCCCC
Q 005352 557 NCIGHE 562 (701)
Q Consensus 557 d~~~~~ 562 (701)
...+.+
T Consensus 464 TP~~~e 469 (559)
T KOG1334|consen 464 TPLTAE 469 (559)
T ss_pred cCCccc
Confidence 875544
No 199
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=3.9e-15 Score=138.88 Aligned_cols=294 Identities=12% Similarity=0.134 Sum_probs=200.9
Q ss_pred CCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
.|...+++|.+.|+++.|..+++|++|..-|.|++|++.+...+..+. +...|+.+..-| + ..+.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEE
Confidence 567788899999999999988899999999999999999988777776 788999999888 4 678888999999999
Q ss_pred eCCCCcEEEEecCCCcEEEEEEee-----CCC----eEEEEecCC-cEEEEECCCCeeeeeeeEEee-cccCCCCCCeeE
Q 005352 423 AVLSCHVVDWVDIRQIVTAVCYRP-----DGQ----GGIVGSMMG-DCRFYNVSDNHLELDAEICVH-SKKKAPCKRITG 491 (701)
Q Consensus 423 d~~~~~~~~~~~~~~~i~~i~~sp-----~g~----~l~~gs~dg-~v~i~d~~~~~~~~~~~~~~~-~~~~~~~~~i~~ 491 (701)
++.-...+.... -.++++-|.+ +++ .++.-+..- .+++-|..... +.... .......+.+++
T Consensus 83 ~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-----qv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 83 TIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-----QVQIADDSERSKLGSVMC 155 (323)
T ss_pred EccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-----eeEccCchhccccCceee
Confidence 998765543321 2334444433 211 111111000 01122221111 11111 112234455666
Q ss_pred EEEecCCC--CEEEEEECCCcEEEEeCCccce----------eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 492 FQFLPQDS--SKVMVSCADSQVRILQGPNVIG----------KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 492 l~~~p~~~--~~l~~~s~dg~I~iwd~~~~~~----------~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
..+-...+ -++++|-.+|.+.+||+..... .+....|..+|.++.+.+.-..=++|+.+-.+..|+++
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeec
Confidence 66433222 3566677799999999886422 22334488999999999877777888889999999987
Q ss_pred CCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCC
Q 005352 560 GHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWP 639 (701)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~ 639 (701)
....... ....+.+.+-.+..+..-|+ +..++++++|+.+++++
T Consensus 236 ~s~gslq--------------------------------~~~e~~lknpGv~gvrIRpD----~KIlATAGWD~RiRVys 279 (323)
T KOG0322|consen 236 HSTGSLQ--------------------------------IRKEITLKNPGVSGVRIRPD----GKILATAGWDHRIRVYS 279 (323)
T ss_pred cccCccc--------------------------------ccceEEecCCCccceEEccC----CcEEeecccCCcEEEEE
Confidence 6531110 01111222333444556676 77888999999999999
Q ss_pred CccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEeec
Q 005352 640 EEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNY 695 (701)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~~ 695 (701)
..++.++.-+.-| ++.|++++|+++ -.++++|+.|++|-+|..|
T Consensus 280 wrtl~pLAVLkyH-----------sagvn~vAfspd-~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 280 WRTLNPLAVLKYH-----------SAGVNAVAFSPD-CELMAAASKDARISLWKLY 323 (323)
T ss_pred eccCCchhhhhhh-----------hcceeEEEeCCC-CchhhhccCCceEEeeecC
Confidence 9988876554334 678999999999 8999999999999999876
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.4e-13 Score=127.04 Aligned_cols=198 Identities=16% Similarity=0.280 Sum_probs=153.0
Q ss_pred cccCcceeeecCccccccccccceEEEEEccCccc-----hhhhcccCcee-ccCCCcEEEEEEccCCCEEEEEeCCCcE
Q 005352 201 DKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSK-----ELSALYKGQEI-QAHDGSILTMKFSPDGQYLASAGDDGVV 274 (701)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~-----~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (701)
-|++.+..+.+.++.+++|+. |.|+=|.+....+ .+-.....+.. .-.--.|++|-..|...-+++++.|+.+
T Consensus 60 ahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~ 138 (325)
T KOG0649|consen 60 AHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVI 138 (325)
T ss_pred ccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEE
Confidence 577888888888887777664 9999999864332 22222111111 1112468999999987788888899999
Q ss_pred EEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc
Q 005352 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (701)
Q Consensus 275 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 354 (701)
.-||+++++ ...+++||+
T Consensus 139 y~~dlE~G~--------------------------------------------------------------i~r~~rGHt 156 (325)
T KOG0649|consen 139 YQVDLEDGR--------------------------------------------------------------IQREYRGHT 156 (325)
T ss_pred EEEEecCCE--------------------------------------------------------------EEEEEcCCc
Confidence 999999985 346778999
Q ss_pred cCeEEEEE-ecCCeEEEEECCCcEEEEECCCCeeeeeec---C--------CCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 355 GEILDLSW-SKNNYLLSASIDKTVRLWRVGNDHCLRVFP---H--------SNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 355 ~~I~~l~~-s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~---h--------~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
+-|.++.- +.++.+++|+.||++|+||.++++++..+. | ...|.+++. +..+|++|+ ...+.+|
T Consensus 157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~lslw 232 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPKLSLW 232 (325)
T ss_pred ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCceeEE
Confidence 99999987 444599999999999999999999998875 1 234667765 567888776 5679999
Q ss_pred eCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC
Q 005352 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (701)
Q Consensus 423 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~ 467 (701)
.++..+....+..+..+..+.|..+ .+++++..+.|.-|.+..
T Consensus 233 hLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 233 HLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 9999999999999999999999755 677788778899998864
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=8.5e-15 Score=145.69 Aligned_cols=192 Identities=22% Similarity=0.358 Sum_probs=147.9
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEE
Q 005352 254 LTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACV 333 (701)
Q Consensus 254 ~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (701)
.+++|+.+|..|++|+.||++|||++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-------------------------------------------------- 177 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-------------------------------------------------- 177 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch--------------------------------------------------
Confidence 789999999999999999999999986653
Q ss_pred EcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCC--
Q 005352 334 VFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDD-- 407 (701)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~-- 407 (701)
.+.....|...|.+|.|+|++ .|++-+.| ..+||+.+++.++.... .......+.|.. ++
T Consensus 178 ------------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~ 243 (398)
T KOG0771|consen 178 ------------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQ 243 (398)
T ss_pred ------------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCC
Confidence 222345688999999999999 99999999 99999999997776654 334466677776 55
Q ss_pred -CEEEE--EEcCCcEEEEeCCCCc------EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEe
Q 005352 408 -NYFIS--GSIDGKVRIWAVLSCH------VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (701)
Q Consensus 408 -~~l~s--gs~dg~v~iwd~~~~~------~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~ 478 (701)
.+++. ...-+.|+.|++.... ..+.......|++++.+++|+++++|+.+|.|.+|+..+.+..
T Consensus 244 ~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~------- 316 (398)
T KOG0771|consen 244 ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL------- 316 (398)
T ss_pred ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee-------
Confidence 33333 3334567777664321 1123334568999999999999999999999999999876543
Q ss_pred ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
+..+..|...|+.+.|+| +.++++..+.+....+..+.
T Consensus 317 ~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 317 QYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEe
Confidence 334667778999999999 78888888888888876543
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.9e-12 Score=126.79 Aligned_cols=198 Identities=15% Similarity=0.230 Sum_probs=144.2
Q ss_pred ccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec----CCCCeEEEEEeeCCCCEEEEEE--cCCcEEEEeCCCC
Q 005352 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSC 427 (701)
Q Consensus 354 ~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~~~~~l~sgs--~dg~v~iwd~~~~ 427 (701)
..+|.++.++.+. |+.+-.+ .|+|||+++.+.+.++. +...+.++.+++ .+.+++.-+ ..|.|.+||..+-
T Consensus 87 pt~IL~VrmNr~R-LvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 87 PTSILAVRMNRKR-LVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred CCceEEEEEccce-EEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEcccc
Confidence 4578888887665 4444443 39999999999999886 344466666665 556776432 3588999999988
Q ss_pred cEE-EEecCCCcEEEEEEeeCCCeEEEEecCCc-EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE
Q 005352 428 HVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGD-CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 428 ~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
+.+ .+..|++.+.+++|+++|.+||+++..|+ ||+|.+.+++...+.. +......|.+++|+| +.++|++.
T Consensus 164 ~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR------RG~~~~~IySL~Fs~-ds~~L~~s 236 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR------RGTYPVSIYSLSFSP-DSQFLAAS 236 (391)
T ss_pred eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee------CCceeeEEEEEEECC-CCCeEEEe
Confidence 777 45579999999999999999999999998 6899999988765432 233357799999999 78999999
Q ss_pred ECCCcEEEEeCCccce------------------------------------eeec-ccCCCCe-EEEEEe--cCCCEEE
Q 005352 506 CADSQVRILQGPNVIG------------------------------------KYKG-LRRSGNQ-LSACFT--SDGKHIV 545 (701)
Q Consensus 506 s~dg~I~iwd~~~~~~------------------------------------~~~~-~~~~~~v-~~l~~s--~dg~~l~ 545 (701)
+..++|+||.+..... .|.. ....... ..+.+. +...++.
T Consensus 237 S~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~ 316 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVL 316 (391)
T ss_pred cCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEE
Confidence 9999999997642110 0000 0011111 223333 4678999
Q ss_pred EEeCCCcEEEEeCCCC
Q 005352 546 SAGEDSNVYMWNCIGH 561 (701)
Q Consensus 546 sgs~Dg~I~iWd~~~~ 561 (701)
.++.||.++.|.+.-.
T Consensus 317 vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 317 VASYDGHLYSYRLPPK 332 (391)
T ss_pred EEEcCCeEEEEEcCCC
Confidence 9999999999998764
No 203
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1e-13 Score=142.25 Aligned_cols=281 Identities=19% Similarity=0.192 Sum_probs=193.9
Q ss_pred cCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 248 AHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
.|...-+.|..+|||+|| |||-.--.|++||+.+.....+..+....+....+..+. .+..++..-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~-----------SK~v~L~~D-- 115 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDY-----------SKSVFLQND-- 115 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccch-----------hhheEeecC--
Confidence 377788999999999985 667778899999998876554444333322221111111 000000000
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEee
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNP 404 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p 404 (701)
..+.|..+. .....+. -...-.+++++.-. -|+.++....|+-++++.|..+..|. ..+.++++..++
T Consensus 116 ----R~IefHak~-----G~hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~ 185 (703)
T KOG2321|consen 116 ----RTIEFHAKY-----GRHYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE 185 (703)
T ss_pred ----ceeeehhhc-----Ceeeeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC
Confidence 000000000 0000000 01223456666544 55666666679999999999999998 458999999999
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC-------C-----cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeee
Q 005352 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-------Q-----IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL 472 (701)
Q Consensus 405 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-------~-----~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~ 472 (701)
...+|++|+.+|.|-.||.++...+..+... + .|+++.|+.+|-.+++|+.+|.+.|||++..+..+
T Consensus 186 -~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~ 264 (703)
T KOG2321|consen 186 -EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL 264 (703)
T ss_pred -ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee
Confidence 7789999999999999999988766444322 2 39999999999999999999999999999877543
Q ss_pred eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
. .......+|..+.|.+.+.+..+++.....++|||-.+....... .....++.+|+-|++.++++|-+++.
T Consensus 265 ~-------kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asi-Ept~~lND~C~~p~sGm~f~Ane~~~ 336 (703)
T KOG2321|consen 265 V-------KDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASI-EPTSDLNDFCFVPGSGMFFTANESSK 336 (703)
T ss_pred e-------cccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeec-cccCCcCceeeecCCceEEEecCCCc
Confidence 2 233345678999998876677777778889999997765544333 35566999999999999999999998
Q ss_pred EEEEeCCC
Q 005352 553 VYMWNCIG 560 (701)
Q Consensus 553 I~iWd~~~ 560 (701)
+..|=+..
T Consensus 337 m~~yyiP~ 344 (703)
T KOG2321|consen 337 MHTYYIPS 344 (703)
T ss_pred ceeEEccc
Confidence 88876654
No 204
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.58 E-value=4.3e-15 Score=157.95 Aligned_cols=267 Identities=18% Similarity=0.256 Sum_probs=198.2
Q ss_pred eecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeee
Q 005352 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEV 288 (701)
Q Consensus 209 ~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~ 288 (701)
+.-.+.++++|+.|..||||.... ..+....+||.+.|+.++.+.+..++|+++.|..|++|.+..+
T Consensus 198 fDrtg~~Iitgsdd~lvKiwS~et-------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~------ 264 (1113)
T KOG0644|consen 198 FDRTGRYIITGSDDRLVKIWSMET-------ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG------ 264 (1113)
T ss_pred eccccceEeecCccceeeeeeccc-------hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC------
Confidence 344567889999999999997432 2233467899999999999999999999999999999999876
Q ss_pred cCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeE
Q 005352 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYL 368 (701)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l 368 (701)
.++..+.||++.|++|+|+|-.
T Consensus 265 --------------------------------------------------------~pvsvLrghtgavtaiafsP~~-- 286 (1113)
T KOG0644|consen 265 --------------------------------------------------------APVSVLRGHTGAVTAIAFSPRA-- 286 (1113)
T ss_pred --------------------------------------------------------chHHHHhccccceeeeccCccc--
Confidence 4667788999999999999964
Q ss_pred EEEECCCcEEEEECCCCeeeee------ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEE
Q 005352 369 LSASIDKTVRLWRVGNDHCLRV------FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAV 442 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~~~~~~------~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i 442 (701)
+.+.||++++||.+- ..... +....-+-.+.|.. ++.-+++++.|+.-+.|.+...... ...+.-+
T Consensus 287 -sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~~~-----~~~lif~ 358 (1113)
T KOG0644|consen 287 -SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLAWR-----SNLLIFV 358 (1113)
T ss_pred -cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccc-cccccccccCCcccccchhhHhhhh-----ccceEEE
Confidence 888999999999872 11111 12345577777776 8888999999999999876532211 0001111
Q ss_pred EEeeC-CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce
Q 005352 443 CYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG 521 (701)
Q Consensus 443 ~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~ 521 (701)
..+.+ ..+.+++-.+-.+++|++.++.+.. ....|...+..+.++|.+....++++.||.+.|||+.....
T Consensus 359 t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H--------~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 359 TRSSDLSSIVVTARNDHRLCVWNLYTGQLLH--------NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred eccccccccceeeeeeeEeeeeecccchhhh--------hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 11111 1345556667778899998875432 24456677889999999999999999999999999875443
Q ss_pred eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 522 KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 522 ~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.-........+...+||++|..++....-|.++|.....++
T Consensus 431 ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 431 IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 32222246778889999999999998888999998865544
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.57 E-value=8.7e-13 Score=126.75 Aligned_cols=232 Identities=17% Similarity=0.231 Sum_probs=174.6
Q ss_pred EEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe---eeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe
Q 005352 349 EFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH---CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (701)
Q Consensus 349 ~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~---~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd 423 (701)
.+.--..+|+|.+|+++. .++.+-....|.||...... ...++. |...|++|+|+| ..+.|++++.|..-++|.
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence 344456789999999999 89999999999999887665 445555 999999999999 889999999999999999
Q ss_pred CCCC----cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 424 VLSC----HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 424 ~~~~----~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
...+ +.+.+..++...+++.|+|.++.|++|+....|.+|-++...--. .....++.....|+++.|+| ++
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW----VsKhikkPirStv~sldWhp-nn 158 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW----VSKHIKKPIRSTVTSLDWHP-NN 158 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee----hhhhhCCccccceeeeeccC-Cc
Confidence 8543 234567788999999999999999999999999999887543210 01112455567899999999 78
Q ss_pred CEEEEEECCCcEEEEeCC-----cc-------------ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 500 SKVMVSCADSQVRILQGP-----NV-------------IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~-----~~-------------~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
-++++|+.|+..|++..- .. ..........+.+..+.|+|+|..|+-.+.|+.+.+=|...+
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 899999999999998631 00 000111135678999999999999999999999999998877
Q ss_pred CCCCc--cc-cccccccccccCCceEEe
Q 005352 562 EEPAH--DQ-AKTIRSLERFTTNASIAI 586 (701)
Q Consensus 562 ~~~~~--~~-~~~~~~~~~~~~~~~~a~ 586 (701)
.+... .. .-+..++.+...+.+++.
T Consensus 239 ~~~v~~~~~~~lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 239 SERVQSVATAQLPLLSVSWISENSVVAA 266 (361)
T ss_pred chhccchhhccCCceeeEeecCCceeec
Confidence 53111 11 134445555544444443
No 206
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.57 E-value=1.1e-12 Score=137.89 Aligned_cols=202 Identities=13% Similarity=0.137 Sum_probs=133.4
Q ss_pred cCeEEEEEecCC-eEEEE-ECCCcEEEEECCC-Cee--eeeecCCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCCC-C
Q 005352 355 GEILDLSWSKNN-YLLSA-SIDKTVRLWRVGN-DHC--LRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLS-C 427 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~-s~dg~I~iWd~~~-~~~--~~~~~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~~-~ 427 (701)
+....++++|++ +|+++ ..++.|.+|++.. +.. +...........++|+| ++++|++++ .++.|.+|++.+ +
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCC
Confidence 446678999998 66555 4588999999973 332 33333445677899999 888877766 478999999964 2
Q ss_pred c---EEEEecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeeee-eeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 428 H---VVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELD-AEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 428 ~---~~~~~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
. .+...........++++|+++++++++ .++.|.+||+.+...... ..... ..........+.|+| +++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~---~~~~g~~p~~~~~~p-dg~~l 189 (330)
T PRK11028 114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV---TTVEGAGPRHMVFHP-NQQYA 189 (330)
T ss_pred CCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCce---ecCCCCCCceEEECC-CCCEE
Confidence 2 223233334567889999999886655 569999999976332110 00000 011123456789999 67777
Q ss_pred EEEEC-CCcEEEEeCCcc------ceeeeccc----CCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCCCC
Q 005352 503 MVSCA-DSQVRILQGPNV------IGKYKGLR----RSGNQLSACFTSDGKHIVSAGE-DSNVYMWNCIGH 561 (701)
Q Consensus 503 ~~~s~-dg~I~iwd~~~~------~~~~~~~~----~~~~v~~l~~s~dg~~l~sgs~-Dg~I~iWd~~~~ 561 (701)
+++.. ++.|.+|++... ...+.... +......+.++|+|++|+++.. ++.|.+|+++..
T Consensus 190 yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 190 YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 77665 999999998631 11111111 1123346889999999999854 789999998654
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.57 E-value=3.9e-14 Score=144.00 Aligned_cols=205 Identities=20% Similarity=0.369 Sum_probs=155.5
Q ss_pred cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 214 ~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
+.++.++.||.+.|-.-..+ ..+.+.+|.+.|.+-.|+|||.-|+|+|+||.|++|.-...-
T Consensus 76 d~~~i~s~DGkf~il~k~~r--------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML---------- 137 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR--------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML---------- 137 (737)
T ss_pred ceEEEEcCCceEEEecccch--------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH----------
Confidence 45677889999888753221 113467899999999999999999999999999999843221
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~ 371 (701)
..++.....+|.|++|.|+. .+++.
T Consensus 138 -----------------------------------------------------RStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 138 -----------------------------------------------------RSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred -----------------------------------------------------HHHHhhcCceeEEEEECCCCCceEEec
Confidence 11122245689999999987 44444
Q ss_pred ECCCcEEEEECCCC-eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCe
Q 005352 372 SIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (701)
Q Consensus 372 s~dg~I~iWd~~~~-~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~ 450 (701)
+ +.+.|=-+.-. +.++--.|.+-|.++.|+| ..+++++|+.|-..+|||-....+.....|..+|++++|.|+ +.
T Consensus 165 g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~ 240 (737)
T KOG1524|consen 165 G--GHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KD 240 (737)
T ss_pred C--CeEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cc
Confidence 3 34555444433 3444445999999999999 889999999999999999987777788889999999999999 67
Q ss_pred EEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 451 GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 451 l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
+++++. .++++ .....+.|..++|++ ++..+++|+..|.+.+-
T Consensus 241 ~~v~S~-nt~R~-------------------~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 241 YLLWSY-NTARF-------------------SSPRVGSIFNLSWSA-DGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeee-eeeee-------------------cCCCccceEEEEEcC-CCceeeccccCceEEEe
Confidence 777765 33442 223346799999999 79999999999988763
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=3.7e-13 Score=146.16 Aligned_cols=233 Identities=15% Similarity=0.119 Sum_probs=157.2
Q ss_pred ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecCeeeeeecCCCCCCce
Q 005352 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSC 297 (701)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~ 297 (701)
.+..|.|||++.... +.+..|...|.+.+|+|||++|+.++.+ ..|.+||+.+++..
T Consensus 182 ~~~~i~i~d~dg~~~--------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~------------ 241 (429)
T PRK01742 182 QPYEVRVADYDGFNQ--------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK------------ 241 (429)
T ss_pred ceEEEEEECCCCCCc--------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE------------
Confidence 357899998764331 3455688899999999999999988754 36999998776421
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEE-ECCC
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA-SIDK 375 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~-s~dg 375 (701)
.+..+.+| ...++|+|+| .|+.+ +.+|
T Consensus 242 ------------------------------------------------~l~~~~g~---~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 242 ------------------------------------------------VVASFRGH---NGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred ------------------------------------------------EEecCCCc---cCceeECCCCCEEEEEEecCC
Confidence 11112233 2357999999 66655 4688
Q ss_pred cEEEE--ECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCCC--CcEEEEecCCCcEEEEEEeeCCCe
Q 005352 376 TVRLW--RVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLS--CHVVDWVDIRQIVTAVCYRPDGQG 450 (701)
Q Consensus 376 ~I~iW--d~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~~--~~~~~~~~~~~~i~~i~~sp~g~~ 450 (701)
.+.|| |+.+++......+...+....|+| +++.|+.++ .+|...||++.. +.. ....+.. ....|+|+|+.
T Consensus 271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~~~~--~~~~~SpDG~~ 346 (429)
T PRK01742 271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGA-SLVGGRG--YSAQISADGKT 346 (429)
T ss_pred cEEEEEEECCCCCeEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCe-EEecCCC--CCccCCCCCCE
Confidence 76555 676776655555667788999999 888777555 568888887643 322 2233333 45789999999
Q ss_pred EEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC--ccceeeecccC
Q 005352 451 GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--NVIGKYKGLRR 528 (701)
Q Consensus 451 l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~ 528 (701)
|+..+.++ +.+||+.++..... ... .......|+| ++.+|+.++.++.+.+|++. +.........+
T Consensus 347 ia~~~~~~-i~~~Dl~~g~~~~l-----t~~-----~~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~ 414 (429)
T PRK01742 347 LVMINGDN-VVKQDLTSGSTEVL-----SST-----FLDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS 414 (429)
T ss_pred EEEEcCCC-EEEEECCCCCeEEe-----cCC-----CCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCC
Confidence 98887755 56699987754321 000 1124577999 78899999999988887753 22233333346
Q ss_pred CCCeEEEEEecC
Q 005352 529 SGNQLSACFTSD 540 (701)
Q Consensus 529 ~~~v~~l~~s~d 540 (701)
.+.+...+|+|-
T Consensus 415 ~g~~~~p~wsp~ 426 (429)
T PRK01742 415 DGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCcccCCC
Confidence 677888899874
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.1e-13 Score=137.89 Aligned_cols=199 Identities=16% Similarity=0.184 Sum_probs=154.3
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec-
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD- 434 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~- 434 (701)
..++|+.+| .|++++.||++|||+..+...+... .|...|.++.|+| |+++|++-+.| ..+||+.+++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 788999998 9999999999999997776655554 4999999999999 99999999999 89999999996664443
Q ss_pred --CCCcEEEEEEeeCC---Ce--EEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 435 --IRQIVTAVCYRPDG---QG--GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 435 --~~~~i~~i~~sp~g---~~--l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
.+.....+.|+.++ .+ ++....-+.|+.|++...+.- .+............|++++.++ ++++++.|+.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~---~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS---NFLRLRKKIKRFKSISSLAVSD-DGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc---cccchhhhhhccCcceeEEEcC-CCcEEEEecc
Confidence 34557778888776 22 233334566777777543321 0001111223345799999999 8999999999
Q ss_pred CCcEEEEeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 508 DSQVRILQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 508 dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
||.|-|++..+....+.. ..|...|+.+.|+|+.+++++.+.|..+.+..+.-.+
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 999999999876655433 4488999999999999999999999999999876643
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=2.7e-12 Score=125.09 Aligned_cols=284 Identities=13% Similarity=0.237 Sum_probs=183.4
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 294 (701)
++++..|..|+||+-+. .....+.. ..+..|+||+|-|. +.-|+.|+.. -|.||............
T Consensus 113 fava~nddvVriy~kss--t~pt~Lks-----~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~----- 179 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSS--TCPTKLKS-----VSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNI----- 179 (445)
T ss_pred hhhhccCcEEEEeccCC--CCCceecc-----hhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccc-----
Confidence 45678888999997433 22222211 14567999999996 4567778775 49999875421110000
Q ss_pred CceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC
Q 005352 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI 373 (701)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~ 373 (701)
+..+. ....+....|| ..|+++.|.++| .+++++.
T Consensus 180 ------------------------------~~~s~-------------~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 180 ------------------------------RMMST-------------HHLQVLQDPGH-NPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred ------------------------------ccccc-------------cchhheeCCCC-ceeeEEEEcCCCCEEeeccc
Confidence 00000 00122333566 789999999999 8888775
Q ss_pred -CCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC-CCcEEEEecCCCcEEEEEEeeCCCe
Q 005352 374 -DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-SCHVVDWVDIRQIVTAVCYRPDGQG 450 (701)
Q Consensus 374 -dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~-~~~~~~~~~~~~~i~~i~~sp~g~~ 450 (701)
|..|.|||..++.++.... ..+.++-+.|+| ++.+|+++.-|+..++|+.. +.....+....+.|...+|+|+|++
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf 294 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF 294 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCE
Confidence 6789999999998877663 567789999999 99999999999999999554 4445567777779999999999998
Q ss_pred EEEEecCCcEEEEECCCCe--eeee---------eeEE-----eecccCCCCCCeeEEEEecCCCCEEEEEECCCc----
Q 005352 451 GIVGSMMGDCRFYNVSDNH--LELD---------AEIC-----VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ---- 510 (701)
Q Consensus 451 l~~gs~dg~v~i~d~~~~~--~~~~---------~~~~-----~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~---- 510 (701)
|+.... |.-++|.+.-.. .... .... .......-+..+.+++|.| .+.++++.-..+.
T Consensus 295 LLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp-sGeyLav~fKg~~~v~~ 372 (445)
T KOG2139|consen 295 LLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP-SGEYLAVIFKGQSFVLL 372 (445)
T ss_pred EEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC-CCCEEEEEEcCCchhhh
Confidence 776654 445555543211 0000 0000 1111222357789999999 7888888766433
Q ss_pred ----EEEEeCCcccee-ee--cccCCCCeEEEEEec---CCCEEEEEeCCCcEEEEeCC
Q 005352 511 ----VRILQGPNVIGK-YK--GLRRSGNQLSACFTS---DGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 511 ----I~iwd~~~~~~~-~~--~~~~~~~v~~l~~s~---dg~~l~sgs~Dg~I~iWd~~ 559 (701)
|.+||.+..... +. +.........++|+| +|.+|..+=..|.+.-|.+.
T Consensus 373 ~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 373 CKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred hhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 566776642221 11 222233355667766 56777777777888877754
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=7.6e-13 Score=135.04 Aligned_cols=191 Identities=18% Similarity=0.237 Sum_probs=153.5
Q ss_pred cCC-eEEEEECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-----------
Q 005352 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS----------- 426 (701)
Q Consensus 364 ~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~----------- 426 (701)
+.+ -|+.|-.-|.|.+.|....+..+.|. ....|+|+.|-|.+...|+.+..+|.+++||..-
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 445 78888888999999887754444443 4578999999998888999999999999997621
Q ss_pred ---C---------------cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCC
Q 005352 427 ---C---------------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (701)
Q Consensus 427 ---~---------------~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 488 (701)
+ .+..|.-..+.|..++|+|||++||+.+.||.++|||..+.++ ....+.....
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL--------lg~mkSYFGG 334 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL--------LGVMKSYFGG 334 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH--------HHHHHhhccc
Confidence 0 0112333445789999999999999999999999999987653 2334555678
Q ss_pred eeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEec-----------------------------
Q 005352 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTS----------------------------- 539 (701)
Q Consensus 489 i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~----------------------------- 539 (701)
..|++|+| |+++|++|+.|.-|.||.+.....+..+++|...|..++|.|
T Consensus 335 LLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~ 413 (636)
T KOG2394|consen 335 LLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRA 413 (636)
T ss_pred eEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhccccccc
Confidence 99999999 899999999999999999999888999999999999999983
Q ss_pred --C----C-------------CEEEEEeCCCcEEEEeCCCCCC
Q 005352 540 --D----G-------------KHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 540 --d----g-------------~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+ + -.|.+.+.|-.+.+||+.....
T Consensus 414 ~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 414 NGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred CCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 0 1 1467888999999999987653
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=8.2e-14 Score=139.68 Aligned_cols=275 Identities=14% Similarity=0.117 Sum_probs=204.0
Q ss_pred eEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC
Q 005352 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 357 I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 435 (701)
-..+.++.+| +|+.|+.-|.|..+|..+++....+.-...|.++.|.. +.++||++ ....++|||-. |.-+..+..
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD~~-GtElHClk~ 208 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH-NEQFFAVA-QKKYVYVYDNN-GTELHCLKR 208 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhc-chHHHHhh-hhceEEEecCC-CcEEeehhh
Confidence 4578899999 99999999999999999999999999888999999997 77777665 57789999964 555555556
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...|..+.|-|.--+|++++..|.++.-|+.++++... .....+.+..+.-+| -...+-+|...|+|.+|.
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~--------~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS--------IRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhhhhHH--------HHccCCccchhhcCC-ccceEEEcCCCceEEecC
Confidence 67899999999988999999999999999999886532 222335677777788 567888899999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCC-CCC
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGL-KCG 594 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~ 594 (701)
........+...|.++|.++++.++|+|++|++.|..++|||+.+-.++.........+--.+.....+|+.|... ..|
T Consensus 280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw 359 (545)
T KOG1272|consen 280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIW 359 (545)
T ss_pred CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeee
Confidence 8877777777789999999999999999999999999999999988765544444444444444555566665432 222
Q ss_pred C-------CCCCCccccCCCCCCCccccCCCcccc--------CccccccCCCCcccCCCCccC
Q 005352 595 N-------AEKEPQLHVSDDDSPENLAFAPARFSL--------GQEYVFESFPKGCATWPEEKL 643 (701)
Q Consensus 595 ~-------~~~~~~~~~~~~~~~~~l~~sp~~~~~--------~~~~~~~s~d~~~~~W~~~~~ 643 (701)
. ..+.+.+.......+..|.|.|-...+ ...++-++.+-..-.|..+..
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPf 423 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPF 423 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcc
Confidence 1 222233333334477778887753322 233455555555544544433
No 213
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.50 E-value=6.8e-12 Score=120.79 Aligned_cols=282 Identities=17% Similarity=0.156 Sum_probs=190.5
Q ss_pred ceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEE-EEeCCCcEEEEEeecCee
Q 005352 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLA-SAGDDGVVRLWQVVEDER 284 (701)
Q Consensus 206 ~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~I~iWd~~~~~~ 284 (701)
-.+++++++++++++.- ++.|.|...- ++..++.. -..|.-+.|..|..+++ .+..|+.|.+|++...+-
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tl--q~~qlf~c------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETL--QLHQLFLC------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchh--hHHHHHHH------HHHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence 46788999998887766 7778874422 22222211 34577899998877655 456788999999987653
Q ss_pred eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
. ..+......+..++|+|
T Consensus 84 ~--------------------------------------------------------------ckIdeg~agls~~~WSP 101 (447)
T KOG4497|consen 84 Y--------------------------------------------------------------CKIDEGQAGLSSISWSP 101 (447)
T ss_pred E--------------------------------------------------------------EEeccCCCcceeeeECC
Confidence 2 22334557889999999
Q ss_pred CC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC--------------------------
Q 005352 365 NN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-------------------------- 416 (701)
Q Consensus 365 ~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d-------------------------- 416 (701)
+| .|.+...+-.|.+|.+.+.++...-.....+..++|+| ++++.+.++.-
T Consensus 102 dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~D 180 (447)
T KOG4497|consen 102 DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTID 180 (447)
T ss_pred CcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccc
Confidence 99 67788889999999999988765554455678899999 88887766532
Q ss_pred ----------CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee-------------
Q 005352 417 ----------GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD------------- 473 (701)
Q Consensus 417 ----------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~------------- 473 (701)
..+.+||..-.-.+......-.+..++|+|.+++|++|+.|+.+++.+--+-+...+
T Consensus 181 ltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~ 260 (447)
T KOG4497|consen 181 LTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLH 260 (447)
T ss_pred ccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhh
Confidence 123333322111222223335688999999999999999999988765322110000
Q ss_pred ----------------------------------------eeEEeec-----ccCCCCCCeeEEEEecCCCCEEEEEEC-
Q 005352 474 ----------------------------------------AEICVHS-----KKKAPCKRITGFQFLPQDSSKVMVSCA- 507 (701)
Q Consensus 474 ----------------------------------------~~~~~~~-----~~~~~~~~i~~l~~~p~~~~~l~~~s~- 507 (701)
....++. ....+...+..++|++ |..++++-..
T Consensus 261 ~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~ 339 (447)
T KOG4497|consen 261 LLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDK 339 (447)
T ss_pred hhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCC
Confidence 0001111 1122345677899999 6777776554
Q ss_pred -CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 508 -DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 508 -dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
-+.+-+||+++..... ......+|....|+|....|+.+.....+++|.....
T Consensus 340 ~PnalW~Wdlq~l~l~a-vLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 340 YPNALWLWDLQNLKLHA-VLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred CCceEEEEechhhhhhh-hhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence 4779999998644322 2236678999999999988888888889999987664
No 214
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.2e-12 Score=140.07 Aligned_cols=196 Identities=15% Similarity=0.104 Sum_probs=135.7
Q ss_pred EEcCCccCeEEEEEecCC-eEEEEECC---CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE-cCCcEEE--
Q 005352 349 EFHGHSGEILDLSWSKNN-YLLSASID---KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRI-- 421 (701)
Q Consensus 349 ~~~~h~~~I~~l~~s~~~-~l~s~s~d---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~i-- 421 (701)
.+..|...+...+|+|+| +|+.++.+ ..|++||+.+++........+....++|+| +++.|+.+. .+|.+.|
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEEecCCcEEEEE
Confidence 345577789999999999 77776643 369999998876543333334455789999 998888764 6776555
Q ss_pred EeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCC
Q 005352 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (701)
Q Consensus 422 wd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~ 500 (701)
||+.++....+..+...+...+|+|||+.|+..+ .+|...+|++........ ... +.. ....|+| +++
T Consensus 277 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~----~l~----~~~--~~~~~Sp-DG~ 345 (429)
T PRK01742 277 MGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS----LVG----GRG--YSAQISA-DGK 345 (429)
T ss_pred EECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE----Eec----CCC--CCccCCC-CCC
Confidence 4777777777666777788999999999877655 578888888754321111 111 111 3467899 677
Q ss_pred EEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 501 KVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 501 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
.|+.++.+ .+.+||+.+........ . .....++|+|+|++|+.++.++.+.+|.+.
T Consensus 346 ~ia~~~~~-~i~~~Dl~~g~~~~lt~-~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 346 TLVMINGD-NVVKQDLTSGSTEVLSS-T-FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEEEEcCC-CEEEEECCCCCeEEecC-C-CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 78777765 46668987544322111 1 123567899999999999999998888764
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.48 E-value=1.2e-13 Score=138.53 Aligned_cols=231 Identities=13% Similarity=0.157 Sum_probs=185.7
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
.-.-..+.++.+|++|+.||.-|.|-.+|..+.....++..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v--------------------------------------- 169 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV--------------------------------------- 169 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh---------------------------------------
Confidence 34457899999999999999999999999999876554432
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCE
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~ 409 (701)
...|.++.|-.+..+++....+.+.||| ..|..+..+.....|..+.|.| ..-+
T Consensus 170 ------------------------~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtElHClk~~~~v~rLeFLP-yHfL 223 (545)
T KOG1272|consen 170 ------------------------METVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTELHCLKRHIRVARLEFLP-YHFL 223 (545)
T ss_pred ------------------------hhhhhhhhhhcchHHHHhhhhceEEEec-CCCcEEeehhhcCchhhhcccc-hhhe
Confidence 2467788888777666677788999999 4666677777778899999999 7788
Q ss_pred EEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCC
Q 005352 410 FISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 488 (701)
|++++..|.++.-|+.+|+++. +....+.+..++-+|-+..+-+|...|+|.+|......... ....|.++
T Consensus 224 L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv--------KiLcH~g~ 295 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV--------KILCHRGP 295 (545)
T ss_pred eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH--------HHHhcCCC
Confidence 8999999999999999999884 44456788889999998899999999999999988765432 23456789
Q ss_pred eeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 489 i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
|.++++.+ ++.++++++.|..++|||++...+...... ..+...++||..|. || ++....|.||.
T Consensus 296 V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl-LA-~~~G~~v~iw~ 360 (545)
T KOG1272|consen 296 VSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL-LA-LSYGDHVQIWK 360 (545)
T ss_pred cceEEECC-CCcEEeecccccceeEeeeccccccceeec-CCCccccccccccc-ee-eecCCeeeeeh
Confidence 99999999 899999999999999999998775544432 45677888987763 33 33445799995
No 216
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.3e-11 Score=133.81 Aligned_cols=233 Identities=12% Similarity=0.065 Sum_probs=153.1
Q ss_pred ceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC---CCcEEEEEeecCeeeeeecCCCCCCceeE
Q 005352 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD---DGVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (701)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 299 (701)
..|.++|++.... +.+..+...+.+.+|||||+.||..+. +..|.+|++.+++..
T Consensus 179 ~~l~~~d~dg~~~--------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-------------- 236 (429)
T PRK03629 179 YELRVSDYDGYNQ--------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-------------- 236 (429)
T ss_pred eeEEEEcCCCCCC--------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE--------------
Confidence 3677777654322 234446778999999999999987543 356888888765421
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEE-EECCC--
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS-ASIDK-- 375 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s-~s~dg-- 375 (701)
.+..+.+| +..++|+|+| .|+. .+.+|
T Consensus 237 ----------------------------------------------~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~ 267 (429)
T PRK03629 237 ----------------------------------------------QVASFPRH---NGAPAFSPDGSKLAFALSKTGSL 267 (429)
T ss_pred ----------------------------------------------EccCCCCC---cCCeEECCCCCEEEEEEcCCCCc
Confidence 01111222 3457999999 5554 34455
Q ss_pred cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC-Cc--EEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEE
Q 005352 376 TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-GK--VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d-g~--v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 452 (701)
.|.+||+.+++......+...+....|+| +++.|+..+.+ +. |.++|+.++...............+|+|+|+.|+
T Consensus 268 ~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred EEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 48899999887766665666788999999 99988777654 44 5555777776655544445567789999999988
Q ss_pred EEecC---CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc---EEEEeCCccceeeecc
Q 005352 453 VGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ---VRILQGPNVIGKYKGL 526 (701)
Q Consensus 453 ~gs~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~---I~iwd~~~~~~~~~~~ 526 (701)
..+.+ ..|.+||+.++.... +.. . .......|+| ++..|+.++.++. +.++++.... .....
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~~-----Lt~---~--~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~G~~-~~~l~ 414 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQV-----LTD---T--FLDETPSIAP-NGTMVIYSSSQGMGSVLNLVSTDGRF-KARLP 414 (429)
T ss_pred EEEccCCCceEEEEECCCCCeEE-----eCC---C--CCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCC-eEECc
Confidence 76543 358889988775431 111 0 1123567999 7888888887654 6667764322 22222
Q ss_pred cCCCCeEEEEEec
Q 005352 527 RRSGNQLSACFTS 539 (701)
Q Consensus 527 ~~~~~v~~l~~s~ 539 (701)
.+.+.+...+|+|
T Consensus 415 ~~~~~~~~p~Wsp 427 (429)
T PRK03629 415 ATDGQVKFPAWSP 427 (429)
T ss_pred cCCCCcCCcccCC
Confidence 3667788888887
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=8.7e-12 Score=121.64 Aligned_cols=311 Identities=14% Similarity=0.196 Sum_probs=192.3
Q ss_pred ccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC---
Q 005352 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC--- 427 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~--- 427 (701)
...+..++|++.- .++.+..|-.|++||-.. ++...++ ....|+|++|-|.....|+.|+..| |.||.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 3567889999865 889999999999999776 5555555 4567999999997788888888654 899965321
Q ss_pred -cE--------EEEe--cCCCcEEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 428 -HV--------VDWV--DIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 428 -~~--------~~~~--~~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
+. .... ....+|+++.|.+||..+++++. +..|.|||..++..... .......++-+.|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL--------~~~glgg~slLkwS 247 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL--------IPKGLGGFSLLKWS 247 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc--------cccCCCceeeEEEc
Confidence 11 0111 12367999999999999999876 56799999998765321 12234668899999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCc-cccccccc
Q 005352 496 PQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAH-DQAKTIRS 574 (701)
Q Consensus 496 p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~-~~~~~~~~ 574 (701)
| ++.+|+++.-|+..++|+........+..-..+.|...+|+|+|++|+-+.. |.-.+|.+.-..+... .....++.
T Consensus 248 P-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~ 325 (445)
T KOG2139|consen 248 P-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKR 325 (445)
T ss_pred C-CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCccccee
Confidence 9 7999999999999999976544333333335569999999999988765542 4455666554433221 11111111
Q ss_pred cccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcccccc--------CCCCcccCCCCccCCCC
Q 005352 575 LERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFE--------SFPKGCATWPEEKLPAL 646 (701)
Q Consensus 575 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~--------s~d~~~~~W~~~~~~~~ 646 (701)
...... ..... ..-...+....+..+++.|.+ .+++.. -....+..|+..+.+.+
T Consensus 326 ~lliaD-------L~e~t------i~ag~~l~cgeaq~lawDpsG----eyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 326 VLLIAD-------LQEVT------ICAGQRLCCGEAQCLAWDPSG----EYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred eeeecc-------chhhh------hhcCcccccCccceeeECCCC----CEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 111100 00000 000123445667788888863 333221 11233456777766643
Q ss_pred ccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeE----EeecCCCc
Q 005352 647 SQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRS----FLNYGLPI 699 (701)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irv----w~~~g~p~ 699 (701)
.-.... -+...+.+++ ++. ...+.|.+|..|-..|+|-- |++|-+|.
T Consensus 389 els~cg-~i~ge~P~~I---sF~--pl~n~g~lLsiaWsTGriq~ypl~f~~~~~p~ 439 (445)
T KOG2139|consen 389 ELSYCG-MIGGEYPAYI---SFG--PLKNEGRLLSIAWSTGRIQRYPLTFQCFRDPQ 439 (445)
T ss_pred EEEecc-cccCCCCceE---Eee--ecccCCcEEEEEeccCceEeeeeEEEeecccc
Confidence 221111 0011111111 112 22234888888888899864 57787773
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.45 E-value=2.7e-12 Score=131.11 Aligned_cols=198 Identities=22% Similarity=0.361 Sum_probs=137.8
Q ss_pred cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCeeeeeec
Q 005352 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVD 289 (701)
Q Consensus 211 ~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~ 289 (701)
..+-.+++|-..|.|.+.+... .+...++.... .-.+..|+|++|-|.+. .++.+-.+|.+.++|..-..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~--~~~sklfne~r-~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------ 253 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPIN--FEVSKLFNEER-LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------ 253 (636)
T ss_pred CCCcceEEeeccCceEEecchh--hHHHHhhhhcc-cccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------
Confidence 3445667777788888887543 45555444322 22457899999999543 55666778999999873211
Q ss_pred CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eE
Q 005352 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL 368 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l 368 (701)
....+... ..-......+....... ...|+..+.--.+.|..++|+|+| +|
T Consensus 254 -~~t~p~~~------------~~k~~~~f~i~t~ksk~---------------~rNPv~~w~~~~g~in~f~FS~DG~~L 305 (636)
T KOG2394|consen 254 -GATAPSYQ------------ALKDGDQFAILTSKSKK---------------TRNPVARWHIGEGSINEFAFSPDGKYL 305 (636)
T ss_pred -cCCCCccc------------ccCCCCeeEEeeeeccc---------------cCCccceeEeccccccceeEcCCCceE
Confidence 00000000 00000000011000000 014555555566789999999999 99
Q ss_pred EEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEee
Q 005352 369 LSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRP 446 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp 446 (701)
++.+.||.+||+|..+.+.+..++ --+...|++|+| |+++|++|+.|--|.||.+..++++. -.+|+..|+.|+|.|
T Consensus 306 A~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 306 ATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999998887776 457799999999 99999999999999999999999884 468999999999998
No 219
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.7e-11 Score=133.52 Aligned_cols=233 Identities=17% Similarity=0.167 Sum_probs=151.3
Q ss_pred ceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecCeeeeeecCCCCCCceeE
Q 005352 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (701)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~ 299 (701)
..|.+||..... .+.+..|...+.+.+|+|||++|+..+.+ ..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~--------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-------------- 241 (433)
T PRK04922 184 YALQVADSDGYN--------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-------------- 241 (433)
T ss_pred EEEEEECCCCCC--------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--------------
Confidence 467788764321 13355677889999999999999987743 46889998765421
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eE-EEEECCC--
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDK-- 375 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l-~s~s~dg-- 375 (701)
.+..+.+....++|+|+| .| ++.+.++
T Consensus 242 -------------------------------------------------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~ 272 (433)
T PRK04922 242 -------------------------------------------------LVASFRGINGAPSFSPDGRRLALTLSRDGNP 272 (433)
T ss_pred -------------------------------------------------EeccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence 111122334567999999 44 4556665
Q ss_pred cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEc-CCc--EEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEE
Q 005352 376 TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DGK--VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~-dg~--v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 452 (701)
.|++||+.+++......+.......+|+| +++.|+..+. +|. |.++|+.+++.............++|+|+|+.|+
T Consensus 273 ~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 273 EIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred eEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 59999999887665555555567889999 8988887763 444 7777877776554443444455789999999998
Q ss_pred EEecCC---cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC---CCcEEEEeCCccceeeecc
Q 005352 453 VGSMMG---DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA---DSQVRILQGPNVIGKYKGL 526 (701)
Q Consensus 453 ~gs~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~---dg~I~iwd~~~~~~~~~~~ 526 (701)
..+.++ .|.+||+.++.... +. +........|+| ++..++..+. .+.|.+++..... .....
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~~-----Lt-----~~~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~g~~-~~~l~ 419 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVRT-----LT-----PGSLDESPSFAP-NGSMVLYATREGGRGVLAAVSTDGRV-RQRLV 419 (433)
T ss_pred EEECCCCceeEEEEECCCCCeEE-----CC-----CCCCCCCceECC-CCCEEEEEEecCCceEEEEEECCCCc-eEEcc
Confidence 875543 58999998765431 11 111234568999 6676666554 3457777775322 22222
Q ss_pred cCCCCeEEEEEec
Q 005352 527 RRSGNQLSACFTS 539 (701)
Q Consensus 527 ~~~~~v~~l~~s~ 539 (701)
.+.+.+...+|+|
T Consensus 420 ~~~g~~~~p~wsp 432 (433)
T PRK04922 420 SADGEVREPAWSP 432 (433)
T ss_pred cCCCCCCCCccCC
Confidence 2345566667765
No 220
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.45 E-value=4.6e-13 Score=128.71 Aligned_cols=223 Identities=15% Similarity=0.202 Sum_probs=158.0
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEE
Q 005352 255 TMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVV 334 (701)
Q Consensus 255 ~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (701)
-++|||+|+|+|+++.- .+.|-|.++-+..+-+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf---------------------------------------------- 45 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF---------------------------------------------- 45 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----------------------------------------------
Confidence 46899999999999875 6778887765432211
Q ss_pred cCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCC-CEE
Q 005352 335 FPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDD-NYF 410 (701)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~-~~l 410 (701)
..-+.|..|.|..+. .|.....++.|.+|++...+-...+. ....+..+.|+| ++ .+|
T Consensus 46 -----------------~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL 107 (447)
T KOG4497|consen 46 -----------------LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHIL 107 (447)
T ss_pred -----------------HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEe
Confidence 113457778888887 56667889999999999988877776 667899999999 77 556
Q ss_pred EEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCee
Q 005352 411 ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 411 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
.+...+-.|.+|.+.+.+.......+..+..++|+|+|++.+..+.-.....+++...+- ..+...........+
T Consensus 108 ~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~-----W~ll~~f~~dT~Dlt 182 (447)
T KOG4497|consen 108 LTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA-----WILLKEFKLDTIDLT 182 (447)
T ss_pred eeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH-----HHHHHhcCCCccccc
Confidence 677789999999999988877666667789999999999999887643322222221110 001111223345678
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 491 GFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
++.|+| ++..++ +||..-....+. ..-.-.+..++|+|.+++|+.|+.|+.++|-|-
T Consensus 183 gieWsP-dg~~la---------Vwd~~Leykv~a-Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 183 GIEWSP-DGNWLA---------VWDNVLEYKVYA-YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred CceECC-CCcEEE---------Eecchhhheeee-eeeccceeEEEeccccceEEeeccchhhhhhce
Confidence 999999 555554 565432112111 113356888999999999999999999988654
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=4.1e-11 Score=130.57 Aligned_cols=232 Identities=11% Similarity=0.098 Sum_probs=153.8
Q ss_pred ceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC---CCcEEEEEeecCeeeeeecCCCCCCceeE
Q 005352 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD---DGVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (701)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 299 (701)
..|.++|.+... .+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.
T Consensus 182 ~~l~~~d~dg~~--------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--------------- 238 (435)
T PRK05137 182 KRLAIMDQDGAN--------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--------------- 238 (435)
T ss_pred eEEEEECCCCCC--------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---------------
Confidence 356677654321 1345568889999999999999988764 46899999877642
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eE-EEEECCCc-
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDKT- 376 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l-~s~s~dg~- 376 (701)
..+..+.+.+...+|+|+| .| ++.+.++.
T Consensus 239 ------------------------------------------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 239 ------------------------------------------------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred ------------------------------------------------EEeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 1122344556788999999 54 46666665
Q ss_pred -EEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEc-CC--cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEE
Q 005352 377 -VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (701)
Q Consensus 377 -I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~-dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 452 (701)
|.+||+.+++......+........|+| +++.|+..+. +| .|+++|+.++....+......+....|+|+|+.|+
T Consensus 271 ~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred eEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEE
Confidence 7777998887766555666677899999 9998887763 33 58888988877666555556677789999999998
Q ss_pred EEecC---CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-C-----CcEEEEeCCccceee
Q 005352 453 VGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-D-----SQVRILQGPNVIGKY 523 (701)
Q Consensus 453 ~gs~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-d-----g~I~iwd~~~~~~~~ 523 (701)
....+ ..|.+||+.++.... +. ....+....|+| +++.|+..+. . ..++++|+......
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~~~-----lt-----~~~~~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~- 417 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGERI-----LT-----SGFLVEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGRNER- 417 (435)
T ss_pred EEEcCCCceEEEEEECCCCceEe-----cc-----CCCCCCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCCCceE-
Confidence 87653 357788876543221 10 112356788999 5666665544 2 25777787543322
Q ss_pred ecccCCCCeEEEEEec
Q 005352 524 KGLRRSGNQLSACFTS 539 (701)
Q Consensus 524 ~~~~~~~~v~~l~~s~ 539 (701)
... ....+...+|+|
T Consensus 418 ~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 418 EVP-TPGDASDPAWSP 432 (435)
T ss_pred Ecc-CCCCccCcccCC
Confidence 111 233455666665
No 222
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.43 E-value=8.8e-11 Score=115.31 Aligned_cols=236 Identities=12% Similarity=0.180 Sum_probs=173.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
...|..+.|..+...|..|+.|| .++|+........
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~------------------------------------------- 40 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF------------------------------------------- 40 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh-------------------------------------------
Confidence 34577788999999999999998 6777765432100
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECC--CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCC
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASID--KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDD 407 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~d--g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~ 407 (701)
......-.|--+-|+.+ +++..+.+ +.+++.++..+..+..+.....|.++.++.
T Consensus 41 -------------------~~~~~~~~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--- 97 (391)
T KOG2110|consen 41 -------------------SKDTEGVSIVEMLFSSS-LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR--- 97 (391)
T ss_pred -------------------cccCCCeEEEEeecccc-eeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc---
Confidence 00001123444445433 44444433 459999999999998888899999999964
Q ss_pred CEEEEEEcCCcEEEEeCCCCcEEEEec----CCCcEEEEEEeeCCCeEEEE--ecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 408 NYFISGSIDGKVRIWAVLSCHVVDWVD----IRQIVTAVCYRPDGQGGIVG--SMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 408 ~~l~sgs~dg~v~iwd~~~~~~~~~~~----~~~~i~~i~~sp~g~~l~~g--s~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
+.|+++-.+ .|+|||+++.+++..+. +...+.++++++.+.+++.- ...|.|.+||+.+-+... .
T Consensus 98 ~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~--------~ 168 (391)
T KOG2110|consen 98 KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN--------T 168 (391)
T ss_pred ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee--------E
Confidence 556665544 59999999998885543 34456677777777788764 347899999998754332 2
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCc-EEEEeCCccceeeecccC--CCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQ-VRILQGPNVIGKYKGLRR--SGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~-I~iwd~~~~~~~~~~~~~--~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
...|...+.+++|++ +|.+|++++..|+ |||+.+.+....+...+. ...|.+++|+|++++|++.|..++|+|+.+
T Consensus 169 I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 169 INAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred EEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 346778999999999 8999999999887 699999887777765443 456889999999999999999999999999
Q ss_pred CCCC
Q 005352 559 IGHE 562 (701)
Q Consensus 559 ~~~~ 562 (701)
+...
T Consensus 248 ~~~~ 251 (391)
T KOG2110|consen 248 EKVS 251 (391)
T ss_pred cccc
Confidence 8755
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.42 E-value=1.9e-11 Score=116.84 Aligned_cols=111 Identities=19% Similarity=0.381 Sum_probs=90.6
Q ss_pred ccCeEEEEEecCC-eE--EEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC---CcEEEEeCCCC
Q 005352 354 SGEILDLSWSKNN-YL--LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---GKVRIWAVLSC 427 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l--~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d---g~v~iwd~~~~ 427 (701)
.++|.+++|+|++ .| ++|..++.|.+||++ .+.+..+. ...++.+.|+| ++++|++++.+ |.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 4579999999998 54 345577899999996 66666664 56788999999 99999998754 66999999988
Q ss_pred cEEEEecCCCcEEEEEEeeCCCeEEEEec------CCcEEEEECCCC
Q 005352 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDN 468 (701)
Q Consensus 428 ~~~~~~~~~~~i~~i~~sp~g~~l~~gs~------dg~v~i~d~~~~ 468 (701)
+.+....+. .++.++|+|+|++|++++. |+.++||+....
T Consensus 136 ~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 136 KKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 888776655 4789999999999999875 677899998654
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.41 E-value=7.5e-11 Score=113.61 Aligned_cols=177 Identities=9% Similarity=0.168 Sum_probs=132.7
Q ss_pred CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC-CCcEEEEec---CCCcEEEEEEeeCCCe
Q 005352 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-SCHVVDWVD---IRQIVTAVCYRPDGQG 450 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~-~~~~~~~~~---~~~~i~~i~~sp~g~~ 450 (701)
..|.|||=....++..+....+|.++.+.+ ..|++.- .+.|.||... +.+.+..+. .+..+.+++-..+...
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 469999988889999999999999999975 4555554 6789999987 334443332 2333333333333344
Q ss_pred EEE-EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc-EEEEeCCccceeeecc--
Q 005352 451 GIV-GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ-VRILQGPNVIGKYKGL-- 526 (701)
Q Consensus 451 l~~-gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~-I~iwd~~~~~~~~~~~-- 526 (701)
|+. |-.-|.|.+-|+...+.. .......|...|.+++++. +|.+++++|..|+ |||||..+........
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~------~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG 223 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPN------APSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRG 223 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcC------CceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecC
Confidence 444 556799999999876542 1122456789999999998 7999999999887 7999998766555443
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 527 RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 527 ~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.....|.+++|||+..+|+++|+.|+|+|+.+....
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 356789999999999999999999999999998765
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=2.8e-11 Score=119.50 Aligned_cols=203 Identities=10% Similarity=0.056 Sum_probs=156.1
Q ss_pred cCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCe----eeeeecCCCCeEEEEEeeCCCCEEEEEEcC--CcEEEEeC
Q 005352 351 HGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH----CLRVFPHSNYVTCVHFNPVDDNYFISGSID--GKVRIWAV 424 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~----~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d--g~v~iwd~ 424 (701)
....+.|..++.. ++.|++|-.+|.+.+|....+- .+..+.....+..+.-++....++++|+.. ..+.|||+
T Consensus 102 ~l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred ccccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeec
Confidence 3445667777653 5689999999999999987432 333344446677777777677788889988 88999999
Q ss_pred CCCcEEEE--------ec--CCCcEEEEEEeeC--CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEE
Q 005352 425 LSCHVVDW--------VD--IRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (701)
Q Consensus 425 ~~~~~~~~--------~~--~~~~i~~i~~sp~--g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l 492 (701)
...+.+-. .+ .+-.++.+.|-+. ...|++++.-+.+++||.+.+..... . ......+|+++
T Consensus 181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~-~------fd~~E~~is~~ 253 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA-Q------FDFLENPISST 253 (412)
T ss_pred ccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee-E------eccccCcceee
Confidence 98754421 11 1234788999987 88999999999999999996654321 1 12234779999
Q ss_pred EEecCCCCEEEEEECCCcEEEEeCCccceeee-cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 493 QFLPQDSSKVMVSCADSQVRILQGPNVIGKYK-GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
...| +++.+++|..-+.+..||++.....-. ..+..+.|.++..+|.+++|+++|-|..|+|+|+++.+
T Consensus 254 ~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 254 GLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred eecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 9999 799999999999999999986554433 23367899999999999999999999999999999855
No 226
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=6.5e-11 Score=116.96 Aligned_cols=222 Identities=13% Similarity=0.139 Sum_probs=161.1
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
....++|..++.. || .|++|-.+|.+.+|....+...
T Consensus 102 ~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~h----------------------------------------- 138 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLH----------------------------------------- 138 (412)
T ss_pred ccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccc-----------------------------------------
Confidence 3456777777765 34 6888889999999998755311
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECC--CcEEEEECCCCeeeeeec----------
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASID--KTVRLWRVGNDHCLRVFP---------- 392 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~d--g~I~iWd~~~~~~~~~~~---------- 392 (701)
..++..+..+ ..+..+.-++.. .+++|+.. ..+.|||+.+.+.+..-+
T Consensus 139 -----------------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~Lr 200 (412)
T KOG3881|consen 139 -----------------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLR 200 (412)
T ss_pred -----------------cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccce
Confidence 0222223323 344555555544 67779988 889999999886655433
Q ss_pred CCCCeEEEEEeeCC--CCEEEEEEcCCcEEEEeCCCCc-EE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC
Q 005352 393 HSNYVTCVHFNPVD--DNYFISGSIDGKVRIWAVLSCH-VV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 393 h~~~V~~l~f~p~~--~~~l~sgs~dg~v~iwd~~~~~-~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
-+-.++++.|.+ . ...|++++.-+.|++||.+.++ .+ .+--...+++++...|.++.+++|..-|.+..||++.+
T Consensus 201 VPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 201 VPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred eeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence 234577889988 6 7889999999999999998764 33 33345788999999999999999999999999999988
Q ss_pred eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEec
Q 005352 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTS 539 (701)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 539 (701)
++.. .......+.|.++..+| ...++++++-|..|||+|+.+.....+.. -...++++-+.+
T Consensus 280 kl~g-------~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~ 341 (412)
T KOG3881|consen 280 KLLG-------CGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD 341 (412)
T ss_pred eeec-------cccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence 7532 12445567899999999 67899999999999999998744333322 234455555544
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.8e-10 Score=125.54 Aligned_cols=202 Identities=16% Similarity=0.143 Sum_probs=140.0
Q ss_pred EEEcCCccCeEEEEEecCC-eEEEEEC---CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE-EEEcCCc--EE
Q 005352 348 HEFHGHSGEILDLSWSKNN-YLLSASI---DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGK--VR 420 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~-~l~s~s~---dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~dg~--v~ 420 (701)
+.+..|...+...+|+|+| .|+..+. +..|.+||+.+++......+.+.+...+|+| +++.|+ +.+.++. |.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecCCCceEE
Confidence 3345677889999999999 6766653 4689999999887765555677788999999 888765 5555554 77
Q ss_pred EEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEec-CC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 421 IWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 421 iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
+||+.+++...+..+.......+|+|||+.|+..+. +| .|+++|+.++.... +.. ....+....|+|
T Consensus 274 ~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~---lt~------~~~~~~~~~~Sp- 343 (435)
T PRK05137 274 TMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR---ISF------GGGRYSTPVWSP- 343 (435)
T ss_pred EEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE---eec------CCCcccCeEECC-
Confidence 789998887777666666778999999998887764 33 57788877654321 110 123456678999
Q ss_pred CCCEEEEEECC---CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCC------CcEEEEeCCCCC
Q 005352 498 DSSKVMVSCAD---SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGED------SNVYMWNCIGHE 562 (701)
Q Consensus 498 ~~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D------g~I~iWd~~~~~ 562 (701)
+++.|+....+ ..|.+||.......... ....+..+.|+|||++|+..+.+ ..++++++.++.
T Consensus 344 dG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 344 RGDLIAFTKQGGGQFSIGVMKPDGSGERILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 66777665543 36788887533222211 22346778999999998776543 257778876554
No 228
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.36 E-value=4.6e-11 Score=115.95 Aligned_cols=264 Identities=17% Similarity=0.287 Sum_probs=170.0
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
..-|.++.|...|.+||||..+|.|.++.-..... .++.... .+.. +..+
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey~~~t------~fqs-hepE---------------------- 74 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-GEYNFQT------EFQS-HEPE---------------------- 74 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccc-cceeeee------eeec-cCcc----------------------
Confidence 45689999999999999999999999997543321 0110000 0000 0000
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC---eEEEEECCCcEEEEECCCCe--------------------
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVGNDH-------------------- 386 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~~-------------------- 386 (701)
| .-+..+ .-...|..+.|.+++ .++..+.|++|++|.+....
T Consensus 75 ----------F----DYLkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~l 139 (433)
T KOG1354|consen 75 ----------F----DYLKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSL 139 (433)
T ss_pred ----------c----chhhhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCcccee
Confidence 0 000000 123468889999876 88888999999999875331
Q ss_pred ---------------eeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC----cEEEEecC-----CCcEE
Q 005352 387 ---------------CLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC----HVVDWVDI-----RQIVT 440 (701)
Q Consensus 387 ---------------~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~----~~~~~~~~-----~~~i~ 440 (701)
|.+.+. |.--|++|.++. |...++++. |-.|.+|++.-. .++....+ ..-|+
T Consensus 140 r~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVIT 217 (433)
T KOG1354|consen 140 RLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVIT 217 (433)
T ss_pred eceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHh
Confidence 111222 777799999998 888888775 788999988632 23333322 34589
Q ss_pred EEEEeeC-CCeEEEEecCCcEEEEECCCCeeeeee-----eEE---eecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 441 AVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDA-----EIC---VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 441 ~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~~~~-----~~~---~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
+..|+|. .+.++-.+..|+|++-|++...+-... ... .......-...|..+.|++ +|.++++-.. -+|
T Consensus 218 saEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDy-ltv 295 (433)
T KOG1354|consen 218 SAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDY-LTV 295 (433)
T ss_pred hhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEecc-cee
Confidence 9999994 567777888999999999954321110 000 0001111235788999999 6788776543 589
Q ss_pred EEEeCC---ccceeeeccc----------CCCCe---EEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 512 RILQGP---NVIGKYKGLR----------RSGNQ---LSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 512 ~iwd~~---~~~~~~~~~~----------~~~~v---~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++||+. .....++.+. ....| ..++|+-++.+++||+....++++++..+.
T Consensus 296 k~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 296 KLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 999985 2233333321 11222 468899999999999999999999977665
No 229
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.36 E-value=8.2e-10 Score=116.28 Aligned_cols=273 Identities=16% Similarity=0.185 Sum_probs=169.3
Q ss_pred cccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCce
Q 005352 218 FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSC 297 (701)
Q Consensus 218 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 297 (701)
+-..++.|.|.|..... . ..++..+...-..+.|+|||+++.+++.||.|.++|+.+.+.+.++..
T Consensus 11 ~~~~~~~v~viD~~t~~--~-----~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------- 76 (369)
T PF02239_consen 11 VERGSGSVAVIDGATNK--V-----VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV------- 76 (369)
T ss_dssp EEGGGTEEEEEETTT-S--E-----EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--------
T ss_pred EecCCCEEEEEECCCCe--E-----EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-------
Confidence 35567899999854321 1 123333333344578999999999999999999999999875544421
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEE-ECCC
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA-SIDK 375 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~-s~dg 375 (701)
......++++++| +++++ ...+
T Consensus 77 --------------------------------------------------------G~~~~~i~~s~DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 77 --------------------------------------------------------GGNPRGIAVSPDGKYVYVANYEPG 100 (369)
T ss_dssp --------------------------------------------------------SSEEEEEEE--TTTEEEEEEEETT
T ss_pred --------------------------------------------------------CCCcceEEEcCCCCEEEEEecCCC
Confidence 1235688999999 66655 5689
Q ss_pred cEEEEECCCCeeeeeec--------CCCCeEEEEEeeCCCCEEEEEEcC-CcEEEEeCCCCcE--EEEecCCCcEEEEEE
Q 005352 376 TVRLWRVGNDHCLRVFP--------HSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHV--VDWVDIRQIVTAVCY 444 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~--------h~~~V~~l~f~p~~~~~l~sgs~d-g~v~iwd~~~~~~--~~~~~~~~~i~~i~~ 444 (701)
.+.++|.++.+.++.+. ....+..|..+| ....++..-.| +.|.+.|...... ..............|
T Consensus 101 ~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~ 179 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGF 179 (369)
T ss_dssp EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE
T ss_pred ceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeeccccccccccc
Confidence 99999999999998875 234677888888 66656555554 7888888776543 355566777889999
Q ss_pred eeCCCeEEEE-ecCCcEEEEECCCCeeeeeeeE-------------------------------Eeecc-c---------
Q 005352 445 RPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEI-------------------------------CVHSK-K--------- 482 (701)
Q Consensus 445 sp~g~~l~~g-s~dg~v~i~d~~~~~~~~~~~~-------------------------------~~~~~-~--------- 482 (701)
+|++++++++ ...+.+-++|..+.++...... ..... .
T Consensus 180 dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 180 DPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp -TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred CcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC
Confidence 9999988775 4567888999887765432210 00000 0
Q ss_pred ------CCCCCCeeEEEEecCCCCEEEEE----ECCCcEEEEeCCccceeeeccc-CCCCeEEEEEecCCCEEEEEeC--
Q 005352 483 ------KAPCKRITGFQFLPQDSSKVMVS----CADSQVRILQGPNVIGKYKGLR-RSGNQLSACFTSDGKHIVSAGE-- 549 (701)
Q Consensus 483 ------~~~~~~i~~l~~~p~~~~~l~~~----s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~sgs~-- 549 (701)
...... ..+..+| ++.++.+. ...+.|.++|..+......... ....+..+.|+++|+++..+..
T Consensus 260 kvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 260 KVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp SEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--
T ss_pred eEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC
Confidence 000111 3455677 67777776 4468999999998754443321 2345999999999997765543
Q ss_pred CCcEEEEeCCCCCC
Q 005352 550 DSNVYMWNCIGHEE 563 (701)
Q Consensus 550 Dg~I~iWd~~~~~~ 563 (701)
++.|.+||..+.++
T Consensus 338 ~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 338 NGAIVVYDAKTLKE 351 (369)
T ss_dssp TTEEEEEETTTTEE
T ss_pred CCEEEEEECCCcEE
Confidence 34699999988764
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.36 E-value=9.5e-10 Score=106.13 Aligned_cols=197 Identities=16% Similarity=0.197 Sum_probs=135.4
Q ss_pred CccCeEEEEEecCCeEEEEECCCcEEEEECC-CCeeeeeec---CCCCeEEEEEeeCCCCEEEE-EEcCCcEEEEeCCCC
Q 005352 353 HSGEILDLSWSKNNYLLSASIDKTVRLWRVG-NDHCLRVFP---HSNYVTCVHFNPVDDNYFIS-GSIDGKVRIWAVLSC 427 (701)
Q Consensus 353 h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~-~~~~~~~~~---h~~~V~~l~f~p~~~~~l~s-gs~dg~v~iwd~~~~ 427 (701)
...+|.++.+.++..++ . ..+.|.||... +-+.+..+. .+....+++-.. +..+||. |-.-|.|+|-|+...
T Consensus 93 f~~~I~~V~l~r~riVv-v-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVV-V-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred eccceeeEEEcCCeEEE-E-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEEcCCCccceEEEEEhhhc
Confidence 34689999998775222 2 35789999987 445555554 233333333222 3333443 345689999999876
Q ss_pred cE---EEEecCCCcEEEEEEeeCCCeEEEEecCCc-EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 428 HV---VDWVDIRQIVTAVCYRPDGQGGIVGSMMGD-CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 428 ~~---~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
+. .....|...|.+++.+-+|..+|+++..|+ |||||..++....+.. .......|.+++|+| +..+|+
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d~A~iy~iaFSp-~~s~La 242 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVDRADIYCIAFSP-NSSWLA 242 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCchheEEEEEeCC-CccEEE
Confidence 65 677889999999999999999999999998 7999999998776532 344557899999999 799999
Q ss_pred EEECCCcEEEEeCCccceeee------------------------cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 504 VSCADSQVRILQGPNVIGKYK------------------------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~~~~------------------------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
++|..|+|+|+.++....... ..-..+...-++|-.+-+.++..+.||.-+=+.+.
T Consensus 243 vsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 243 VSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred EEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 999999999998764221111 01123344555666554555555667765544443
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=2.2e-10 Score=124.33 Aligned_cols=219 Identities=17% Similarity=0.171 Sum_probs=136.3
Q ss_pred eccCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 246 IQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~------------------------------------ 234 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV------------------------------------ 234 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE------------------------------------
Confidence 44577889999999999999887643 358999987764211
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE-EEECCCcEEEEE--CCCCeeeeeecCCCCeE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDKTVRLWR--VGNDHCLRVFPHSNYVT 398 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s~dg~I~iWd--~~~~~~~~~~~h~~~V~ 398 (701)
+....+.+...+|+|++ .|+ +.+.++...||. +..+.......+.....
T Consensus 235 ---------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~ 287 (427)
T PRK02889 235 ---------------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDT 287 (427)
T ss_pred ---------------------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCc
Confidence 11122345578999999 554 667788766664 55554433333555567
Q ss_pred EEEEeeCCCCEEEEEEc-CCcEEEEe--CCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCC---cEEEEECCCCeeee
Q 005352 399 CVHFNPVDDNYFISGSI-DGKVRIWA--VLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG---DCRFYNVSDNHLEL 472 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~-dg~v~iwd--~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg---~v~i~d~~~~~~~~ 472 (701)
...|+| +++.|+..+. +|...||. +.++...............+|+|+|++|+..+.++ .|.+||+.++....
T Consensus 288 ~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 288 EPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA 366 (427)
T ss_pred CeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence 789999 9988876654 45666664 45555443333333345678999999998877654 59999998765432
Q ss_pred eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-CCc--EEEEeCCccceeeecccCCCCeEEEEEecC
Q 005352 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQ--VRILQGPNVIGKYKGLRRSGNQLSACFTSD 540 (701)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-dg~--I~iwd~~~~~~~~~~~~~~~~v~~l~~s~d 540 (701)
. .. ........|+| ++..|+.++. .+. +.+.+..... ......+.+.+...+|+|-
T Consensus 367 l-----t~-----~~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~~g~~-~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 367 L-----TD-----TTRDESPSFAP-NGRYILYATQQGGRSVLAAVSSDGRI-KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred c-----cC-----CCCccCceECC-CCCEEEEEEecCCCEEEEEEECCCCc-eEEeecCCCCCCCCccCCC
Confidence 1 11 11235678999 5666666554 333 4455553221 1111224455666777763
No 232
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=6.9e-10 Score=114.72 Aligned_cols=306 Identities=16% Similarity=0.202 Sum_probs=185.7
Q ss_pred cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEE-----eC-----CCcEEEEEee
Q 005352 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASA-----GD-----DGVVRLWQVV 280 (701)
Q Consensus 211 ~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-----s~-----Dg~I~iWd~~ 280 (701)
.++..+...+.++.++|++....... +.--...++++.|+|-|.||.|- -. ...+++|++.
T Consensus 43 S~~G~lfA~~~~~~v~i~~~~~~~~~---------lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 43 SNNGRLFAYSDNQVVKVFEIATLKVV---------LCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred cCCCcEEEEEcCCeEEEEEccCCcEE---------EEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 33445555677888999986543211 11122268999999999999873 11 2357799999
Q ss_pred cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEE
Q 005352 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (701)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 360 (701)
++.....+........+..|..+...... ........+....++ .+.+ .-|...|..+
T Consensus 114 t~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-----------------lv~nev~f~~~~~f~---~~~~--kl~~~~i~~f 171 (566)
T KOG2315|consen 114 TGVQRSQIQKKMQNGWVPQFSIDESLAAR-----------------LVSNEVQFYDLGSFK---TIQH--KLSVSGITML 171 (566)
T ss_pred cceehhheehhhhcCcccccccchhhhhh-----------------hhcceEEEEecCCcc---ceee--eeeccceeeE
Confidence 86544444333222223333332211100 000111111222111 1222 2356789999
Q ss_pred EEecCC---eEEE-----EECCCcEEEEECCCCeeee-----eecCCCCeEEEEEeeCCCCEEEEEEc-----------C
Q 005352 361 SWSKNN---YLLS-----ASIDKTVRLWRVGNDHCLR-----VFPHSNYVTCVHFNPVDDNYFISGSI-----------D 416 (701)
Q Consensus 361 ~~s~~~---~l~s-----~s~dg~I~iWd~~~~~~~~-----~~~h~~~V~~l~f~p~~~~~l~sgs~-----------d 416 (701)
.++|.. .+++ .+.-+.|+||.......-. .|-..+.| .+.|++....+|+.++. .
T Consensus 172 ~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkv-qm~WN~~gt~LLvLastdVDktn~SYYGE 250 (566)
T KOG2315|consen 172 SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKV-QMKWNKLGTALLVLASTDVDKTNASYYGE 250 (566)
T ss_pred EecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccccee-EEEeccCCceEEEEEEEeecCCCcccccc
Confidence 999974 3432 3455679999876332222 22122333 46677633334443332 2
Q ss_pred CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEE--EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV--GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 417 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~--gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
.++++.++....+..-....++|.+++|+|+++.+++ |-.-..+.|||++..-. . ....++-+.+-|
T Consensus 251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-~----------df~egpRN~~~f 319 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-F----------DFPEGPRNTAFF 319 (566)
T ss_pred ceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe-E----------eCCCCCccceEE
Confidence 4688888885555555666899999999999987766 55677899999985432 1 112355677889
Q ss_pred ecCCCCEEEEEEC---CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeC------CCcEEEEeCCCCC
Q 005352 495 LPQDSSKVMVSCA---DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE------DSNVYMWNCIGHE 562 (701)
Q Consensus 495 ~p~~~~~l~~~s~---dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~------Dg~I~iWd~~~~~ 562 (701)
+| .+++++.++. .|.|-|||+.+.....+. ....-+-+.|+|||++|+|++. |+.++||++....
T Consensus 320 np-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~--~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 320 NP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKF--KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred CC-CCCEEEEeecCCCCCceEEEeccchhhcccc--ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 99 6777776665 589999999885555444 3344566889999999999864 7889999987654
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=2.7e-10 Score=123.57 Aligned_cols=203 Identities=12% Similarity=0.091 Sum_probs=137.2
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEEEE---CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEE-EcCC--cE
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLSAS---IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISG-SIDG--KV 419 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s~s---~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sg-s~dg--~v 419 (701)
.+.+..+...+...+|+|+| .|+..+ .+..|.+|++.+++........+.+...+|+| +++.|+.. ..+| .|
T Consensus 191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I 269 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNL 269 (429)
T ss_pred CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEE
Confidence 34455567789999999999 666543 24579999999887655444445566789999 88887754 4444 48
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecC-Cc--EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 420 RIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM-GD--CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 420 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d-g~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
++||+.+++..........+....|+|+|+.|+..+.. +. |.++++.++.... +. ..........|+|
T Consensus 270 ~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~---lt------~~~~~~~~~~~Sp 340 (429)
T PRK03629 270 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR---IT------WEGSQNQDADVSS 340 (429)
T ss_pred EEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE---ee------cCCCCccCEEECC
Confidence 89999998887776666678899999999988777654 44 4444665543221 11 1112345688999
Q ss_pred CCCCEEEEEECC---CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCc---EEEEeCCCCC
Q 005352 497 QDSSKVMVSCAD---SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSN---VYMWNCIGHE 562 (701)
Q Consensus 497 ~~~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~---I~iWd~~~~~ 562 (701)
++..|+..+.+ ..|.+||+.+.....-. .........|+|||++|+.++.++. +++++++...
T Consensus 341 -DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt--~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 341 -DGKFMVMVSSNGGQQHIAKQDLATGGVQVLT--DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred -CCCEEEEEEccCCCceEEEEECCCCCeEEeC--CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 66766665543 35888897654322211 1122346789999999999988765 6777875543
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.32 E-value=7.1e-09 Score=109.28 Aligned_cols=273 Identities=14% Similarity=0.174 Sum_probs=174.4
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC----CCcEEEEEeecC-eeeeeecCCCCCCc
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD----DGVVRLWQVVED-ERLTEVDIPEIDPS 296 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----Dg~I~iWd~~~~-~~~~~~~~~~~~~~ 296 (701)
.+.|.+|.++.....+..... +. -......|+++|++++|.++.+ ++.|..|.+... ..+..
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~---~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~--------- 78 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQT---VA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL--------- 78 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEE---EE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE---------
T ss_pred CCcEEEEEEcCCCCCceEeee---ec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE---------
Confidence 378999998655544443321 11 2344567899999999998877 568989988764 11111
Q ss_pred eeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE-CC
Q 005352 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS-ID 374 (701)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s-~d 374 (701)
+.........-..++++|++ +|+++. .+
T Consensus 79 --------------------------------------------------~~~~~~~g~~p~~i~~~~~g~~l~vany~~ 108 (345)
T PF10282_consen 79 --------------------------------------------------LNSVPSGGSSPCHIAVDPDGRFLYVANYGG 108 (345)
T ss_dssp --------------------------------------------------EEEEEESSSCEEEEEECTTSSEEEEEETTT
T ss_pred --------------------------------------------------eeeeccCCCCcEEEEEecCCCEEEEEEccC
Confidence 11111122345578899999 776666 58
Q ss_pred CcEEEEECCC-Ceeeee---ec-----------CCCCeEEEEEeeCCCCEEEEEEc-CCcEEEEeCCCCc--EEE----E
Q 005352 375 KTVRLWRVGN-DHCLRV---FP-----------HSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLSCH--VVD----W 432 (701)
Q Consensus 375 g~I~iWd~~~-~~~~~~---~~-----------h~~~V~~l~f~p~~~~~l~sgs~-dg~v~iwd~~~~~--~~~----~ 432 (701)
|.|.++++.. +..... +. ......++.|+| +++++++... ...|.+|++.... +.. .
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~ 187 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK 187 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc
Confidence 9999999987 333222 21 234578999999 8888877653 3579999997654 322 2
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEec-CCcEEEEECC--CCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CC
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVS--DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-AD 508 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~d 508 (701)
.........+.|+|+++++++... ++.|.+|++. ++.+.....+...............+.++| ++++|+++. ..
T Consensus 188 ~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~ 266 (345)
T PF10282_consen 188 VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGS 266 (345)
T ss_dssp CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTT
T ss_pred cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccC
Confidence 345567899999999998877654 7789999998 554443333332222222223688899999 566666655 57
Q ss_pred CcEEEEeCCcc--ce-ee-ecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 005352 509 SQVRILQGPNV--IG-KY-KGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCI 559 (701)
Q Consensus 509 g~I~iwd~~~~--~~-~~-~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~ 559 (701)
+.|.+|++... .. .. ...........++++|+|++|+++. .++.|.+|+++
T Consensus 267 ~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 267 NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 88999998421 11 11 1111344578999999999999887 55789999875
No 235
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.31 E-value=4.5e-11 Score=116.12 Aligned_cols=248 Identities=14% Similarity=0.245 Sum_probs=176.8
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec-CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE-DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+.+.||.+.|+....-|-..-+++.+.|.++|||--.+ ++.-..
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps----------------------------------- 62 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS----------------------------------- 62 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch-----------------------------------
Confidence 45778999999998888777899999999999996433 221100
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC----eeeeee-cCCCC
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND----HCLRVF-PHSNY 396 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~----~~~~~~-~h~~~ 396 (701)
+ ...-..+++++.+.+.. .|+.|-.+|++.-+.+... ..++.+ .|...
T Consensus 63 ------------------------I--~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~ 116 (404)
T KOG1409|consen 63 ------------------------I--YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQAR 116 (404)
T ss_pred ------------------------h--hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcc
Confidence 0 01234578888888888 8888889999988866432 233333 38999
Q ss_pred eEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeE
Q 005352 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 397 V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~ 476 (701)
|..+-|+- ....+++.+.|..+.---.+.+..+.-.....+.+++.+.-. +..+|...|.|..-.+....+.
T Consensus 117 v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~----- 188 (404)
T KOG1409|consen 117 VSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQ----- 188 (404)
T ss_pred eeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCc-----
Confidence 99999997 788899999888765444444443321111122222222222 5667777787777666544432
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc-cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYM 555 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i 555 (701)
+......+...++++.|.| ....+++|..|..+.+||+.- ....+...+|...|..++..+--+.|++++.||.|.+
T Consensus 189 -~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 189 -LITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred -eEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 2334566778999999999 789999999999999999873 3344555668888999988888899999999999999
Q ss_pred EeCCCCC
Q 005352 556 WNCIGHE 562 (701)
Q Consensus 556 Wd~~~~~ 562 (701)
|+++...
T Consensus 267 w~mn~~r 273 (404)
T KOG1409|consen 267 WNMNVKR 273 (404)
T ss_pred Eecccee
Confidence 9998754
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=3.1e-10 Score=123.59 Aligned_cols=204 Identities=15% Similarity=0.147 Sum_probs=139.4
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECC---CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE-EEEcCC--
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASID---KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDG-- 417 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~d---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~dg-- 417 (701)
...+.+..|...+...+|+|++ .|+..+.. ..|.+||+.+++........+...+.+|+| +++.|+ +.+.+|
T Consensus 194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~g~~ 272 (433)
T PRK04922 194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTLSRDGNP 272 (433)
T ss_pred CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEEeCCCCc
Confidence 3445566677889999999999 77776643 469999998887655544555566889999 888765 445555
Q ss_pred cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEec-CCc--EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 418 KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MGD--CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 418 ~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
.|++||+.+++......+.......+|+|||+.|+..+. +|. |.++++.+++... +.. ........+|
T Consensus 273 ~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~---lt~------~g~~~~~~~~ 343 (433)
T PRK04922 273 EIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER---LTF------QGNYNARASV 343 (433)
T ss_pred eEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE---eec------CCCCccCEEE
Confidence 599999999887766666556678899999998887764 444 6666766554321 111 1122346899
Q ss_pred ecCCCCEEEEEECCC---cEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCC
Q 005352 495 LPQDSSKVMVSCADS---QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGED---SNVYMWNCIGH 561 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D---g~I~iWd~~~~ 561 (701)
+| +++.++..+.++ .|.+||..+....... +........|+|||++|+..+.+ +.|+++++...
T Consensus 344 Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 344 SP-DGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CC-CCCEEEEEECCCCceeEEEEECCCCCeEECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 99 677776655432 6899998654433211 22244567899999988877653 45788887544
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.29 E-value=2.5e-10 Score=109.19 Aligned_cols=149 Identities=14% Similarity=0.277 Sum_probs=102.6
Q ss_pred EEEEeeCCCCEEEEEEc----------CCcEEEEeC--CCCcEEEE-ecCCCcEEEEEEeeCCCeEEEE--ecCCcEEEE
Q 005352 399 CVHFNPVDDNYFISGSI----------DGKVRIWAV--LSCHVVDW-VDIRQIVTAVCYRPDGQGGIVG--SMMGDCRFY 463 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~----------dg~v~iwd~--~~~~~~~~-~~~~~~i~~i~~sp~g~~l~~g--s~dg~v~i~ 463 (701)
.+.|+| .+++|+.-.. -+...+|.+ ........ ....++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 10 ~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467777 6666554332 123445544 33333222 2345579999999999987664 456799999
Q ss_pred ECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC---CCcEEEEeCCccceeeecccCCCCeEEEEEecC
Q 005352 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA---DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSD 540 (701)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~---dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~d 540 (701)
|++.... . .. ....+..+.|+| +++++++++. .|.|.+||..+....... ....++.++|+|+
T Consensus 89 d~~~~~i-~----~~------~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~~~~t~~~WsPd 154 (194)
T PF08662_consen 89 DVKGKKI-F----SF------GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTF--EHSDATDVEWSPD 154 (194)
T ss_pred cCcccEe-E----ee------cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeecc--ccCcEEEEEEcCC
Confidence 9973221 1 11 124577899999 7888888775 467999999976665554 3345789999999
Q ss_pred CCEEEEEeC------CCcEEEEeCCCCC
Q 005352 541 GKHIVSAGE------DSNVYMWNCIGHE 562 (701)
Q Consensus 541 g~~l~sgs~------Dg~I~iWd~~~~~ 562 (701)
|++|++++. |+.++||++....
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEecCeE
Confidence 999999864 7889999987543
No 238
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=7.9e-10 Score=121.97 Aligned_cols=144 Identities=24% Similarity=0.389 Sum_probs=117.5
Q ss_pred CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 212 ~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
++=++++|+.-+.|.+|......+. ..+.||.+.|..+.|+.||+|+++++.|.++|+|++++.+..
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~p-------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~------ 210 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNKP-------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL------ 210 (967)
T ss_pred cEEEEEeccccccEEEEeccccCCc-------ceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc------
Confidence 3445677889999999987632222 157899999999999999999999999999999999987522
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSA 371 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~ 371 (701)
....-+|+..|..+++.|+ +++|+
T Consensus 211 -------------------------------------------------------~~~~fgHsaRvw~~~~~~n-~i~t~ 234 (967)
T KOG0974|consen 211 -------------------------------------------------------GCTGFGHSARVWACCFLPN-RIITV 234 (967)
T ss_pred -------------------------------------------------------CcccccccceeEEEEeccc-eeEEe
Confidence 1233579999999999999 99999
Q ss_pred ECCCcEEEEECCCCeeeeeec-C-CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 372 SIDKTVRLWRVGNDHCLRVFP-H-SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 372 s~dg~I~iWd~~~~~~~~~~~-h-~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
+.|.+.++|+....+.. .+. | ...+..++..+ +....++++.|+.+++||+..
T Consensus 235 gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 235 GEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccceEEEEEecccceeh-hhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 99999999976544443 554 4 45789999988 888999999999999998754
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=7.1e-10 Score=120.71 Aligned_cols=197 Identities=15% Similarity=0.139 Sum_probs=133.7
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
.+..+...+...+|+|||++||.+..+ ..|.+||+.+++..
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~------------------------------------ 227 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE------------------------------------ 227 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE------------------------------------
Confidence 345577789999999999999987654 47999998765321
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE-EEECCC--cEEEEECCCCeeeeeecCCCCe
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDK--TVRLWRVGNDHCLRVFPHSNYV 397 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s~dg--~I~iWd~~~~~~~~~~~h~~~V 397 (701)
.+..+...+.+++|+|++ .|+ +.+.++ .|.+||+.+++......+....
T Consensus 228 ---------------------------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 280 (417)
T TIGR02800 228 ---------------------------KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGID 280 (417)
T ss_pred ---------------------------EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCC
Confidence 111233445668999998 554 455444 5889999888765555555556
Q ss_pred EEEEEeeCCCCEEEEEEcC-C--cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCC---cEEEEECCCCeee
Q 005352 398 TCVHFNPVDDNYFISGSID-G--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG---DCRFYNVSDNHLE 471 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~d-g--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg---~v~i~d~~~~~~~ 471 (701)
....|+| +++.|+..+.. + .|.++|+.+++...+......+..+.|+|+|++++.++.++ .|.+||+.++...
T Consensus 281 ~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 281 TEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER 359 (417)
T ss_pred CCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence 6778999 88888766543 3 58888988887666655666778889999999999988776 7889998875432
Q ss_pred eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC---cEEEEeC
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS---QVRILQG 516 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg---~I~iwd~ 516 (701)
.. .. ........|+| ++..|+..+.++ .+++.+.
T Consensus 360 ~l-----~~-----~~~~~~p~~sp-dg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 360 VL-----TD-----TGLDESPSFAP-NGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred Ec-----cC-----CCCCCCceECC-CCCEEEEEEeCCCcEEEEEEEC
Confidence 11 10 01123457899 566666655543 3444443
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.27 E-value=1.1e-09 Score=115.31 Aligned_cols=195 Identities=12% Similarity=0.159 Sum_probs=134.6
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCe-EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEe
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYV-TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYR 445 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V-~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~s 445 (701)
.+++-..++.|.+.|..+.+.+..+.....+ ..+.|+| +++++++++.||.|.++|+.+.+++...........++++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVS 86 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE-
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEc
Confidence 4456667899999999999999999854444 4577899 9999999999999999999999999888888889999999
Q ss_pred eCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcccee-e
Q 005352 446 PDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK-Y 523 (701)
Q Consensus 446 p~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~-~ 523 (701)
+||++++++. ..+.+.++|..+.+............. ....++.++..+|....++++.-..+.|.+.|..+.... .
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~-~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD-GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT-TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceeeccccccccc-ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence 9999999876 589999999998776554332222211 145678888888844344444455689999997654222 2
Q ss_pred ecccCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCCC
Q 005352 524 KGLRRSGNQLSACFTSDGKHIVSA-GEDSNVYMWNCIGHEE 563 (701)
Q Consensus 524 ~~~~~~~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~~~~ 563 (701)
.............|+|+++|++.+ .....|-++|..+++.
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred eeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence 223345667889999999987665 5567899999887654
No 241
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.9e-09 Score=117.08 Aligned_cols=196 Identities=15% Similarity=0.148 Sum_probs=128.9
Q ss_pred EcCCccCeEEEEEecCC-eEEEEECC---CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE-EEEcCCcEEEE--
Q 005352 350 FHGHSGEILDLSWSKNN-YLLSASID---KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGKVRIW-- 422 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~~-~l~s~s~d---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~dg~v~iw-- 422 (701)
+..+...+.+.+|+|++ .|+..+.+ ..|.+||+.+++........+.+.+.+|+| +++.|+ +.+.+|...||
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSP-DGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCCceEEEE
Confidence 34566788899999999 77666543 359999999987765544556677899999 888776 56677776665
Q ss_pred eCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEec-CCcEEEEEC--CCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNV--SDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 423 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
|+.++....+..+........|+|||+.|+..+. .|...+|.+ .++.... +... ........|+| ++
T Consensus 270 d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~---lt~~------g~~~~~~~~Sp-DG 339 (427)
T PRK02889 270 NADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR---VTFT------GSYNTSPRISP-DG 339 (427)
T ss_pred ECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE---EecC------CCCcCceEECC-CC
Confidence 5555555555555555677899999998886654 456666655 3332211 1111 12234578999 67
Q ss_pred CEEEEEECCC---cEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeC
Q 005352 500 SKVMVSCADS---QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDS---NVYMWNC 558 (701)
Q Consensus 500 ~~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg---~I~iWd~ 558 (701)
++|+..+.++ .|.+||+......... .........|+|||++|+.++.++ .+++.++
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt--~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTALT--DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEEcc--CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 7777766544 6999998754332221 223346789999999998877544 2445455
No 242
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=4.5e-09 Score=108.82 Aligned_cols=319 Identities=14% Similarity=0.166 Sum_probs=202.4
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCc
Q 005352 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (701)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (701)
.++...+++++|+++|.+.. ..++|++...+..+.+.
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~------------------------------------------ 71 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCV------------------------------------------ 71 (566)
T ss_pred CcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEe------------------------------------------
Confidence 34778889999988887764 68999998776311111
Q ss_pred cEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEE-----EC-----CCcEEEEECCCCeeeeeec--CCCCe
Q 005352 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA-----SI-----DKTVRLWRVGNDHCLRVFP--HSNYV 397 (701)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~-----s~-----dg~I~iWd~~~~~~~~~~~--h~~~V 397 (701)
. ...+.++.|+|-+ +|.|= .. .-.+++|++.++.....+. ....
T Consensus 72 --------------------~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~- 128 (566)
T KOG2315|consen 72 --------------------E--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG- 128 (566)
T ss_pred --------------------c--cceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-
Confidence 1 1156777788877 55431 12 2347899999965555554 2222
Q ss_pred EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCC--eEEE-----EecCCcEEEEECCCCee
Q 005352 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ--GGIV-----GSMMGDCRFYNVSDNHL 470 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~--~l~~-----gs~dg~v~i~d~~~~~~ 470 (701)
.+..|++ ++.+.+ --..+.+.+|++.+.+.....-+...|+.+.++|.+. .+++ .+.-+.|+||.......
T Consensus 129 W~~qfs~-dEsl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSI-DESLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred ccccccc-chhhhh-hhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 6899998 665433 3346789999998876665555678899999998743 3333 34556799998873221
Q ss_pred eeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-----------CCcEEEEeCCccceeeecccCCCCeEEEEEec
Q 005352 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-----------DSQVRILQGPNVIGKYKGLRRSGNQLSACFTS 539 (701)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-----------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 539 (701)
.. ....+......-..+.|++....+|+.++. ..+++++++........+ ...++|.++.|+|
T Consensus 207 ~~-----~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~ 280 (566)
T KOG2315|consen 207 HQ-----PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSP 280 (566)
T ss_pred cc-----hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECC
Confidence 10 000011111222346777754455554443 246788887744444444 3579999999999
Q ss_pred CCCEEEE--EeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCC
Q 005352 540 DGKHIVS--AGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAP 617 (701)
Q Consensus 540 dg~~l~s--gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp 617 (701)
+|+-++. |-.-..+.|+|++..- .+.+...+-+.+-|+|
T Consensus 281 s~~EF~VvyGfMPAkvtifnlr~~~---------------------------------------v~df~egpRN~~~fnp 321 (566)
T KOG2315|consen 281 SGREFAVVYGFMPAKVTIFNLRGKP---------------------------------------VFDFPEGPRNTAFFNP 321 (566)
T ss_pred CCCEEEEEEecccceEEEEcCCCCE---------------------------------------eEeCCCCCccceEECC
Confidence 9976654 4466789999876542 1112223334455677
Q ss_pred CccccCccccc---cCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecC------CCe
Q 005352 618 ARFSLGQEYVF---ESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGW------DGR 688 (701)
Q Consensus 618 ~~~~~~~~~~~---~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~------DG~ 688 (701)
. ++.++. +...|.+-+||......+..+.+. .+.-..++++ |.+|+||.. |..
T Consensus 322 ~----g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-------------~tt~~eW~Pd-Ge~flTATTaPRlrvdNg 383 (566)
T KOG2315|consen 322 H----GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-------------NTTVFEWSPD-GEYFLTATTAPRLRVDNG 383 (566)
T ss_pred C----CCEEEEeecCCCCCceEEEeccchhhccccccC-------------CceEEEEcCC-CcEEEEEeccccEEecCC
Confidence 5 444433 346677889999988888776444 2222367888 999999976 678
Q ss_pred EeEEeecCCCcC
Q 005352 689 IRSFLNYGLPIP 700 (701)
Q Consensus 689 Irvw~~~g~p~~ 700 (701)
|+|||.+|-+++
T Consensus 384 ~KiwhytG~~l~ 395 (566)
T KOG2315|consen 384 IKIWHYTGSLLH 395 (566)
T ss_pred eEEEEecCceee
Confidence 999999997654
No 243
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.23 E-value=5.5e-10 Score=108.59 Aligned_cols=276 Identities=16% Similarity=0.246 Sum_probs=168.9
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCC------------CcEEEEEEccCCC--EEEEEeCCCc
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHD------------GSILTMKFSPDGQ--YLASAGDDGV 273 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~Lasgs~Dg~ 273 (701)
.+...+++|++|..+|+|.++.-.+..+. ......+++.|. ..|..+.|.+++. .++..+.|.+
T Consensus 32 ef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdkt 109 (433)
T KOG1354|consen 32 EFDHYGERLATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKT 109 (433)
T ss_pred EeecccceEeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcc
Confidence 35567889999999999999986544331 111112345554 3688999988754 5677778999
Q ss_pred EEEEEeecCeeee-eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC-CccEEEcCCccccccCCCeEEE-
Q 005352 274 VRLWQVVEDERLT-EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS-ESACVVFPPKVFRILEKPLHEF- 350 (701)
Q Consensus 274 I~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 350 (701)
|++|.+....... .+..+... .......+....... +..+.. .|.+.+
T Consensus 110 iKlWKi~er~~k~~~~~~~~~~-------------------~~~~~~~lr~p~~~~~~~~vea----------~prRv~a 160 (433)
T KOG1354|consen 110 IKLWKIRERGSKKEGYNLPEEG-------------------PPGTITSLRLPVEGRHDLEVEA----------SPRRVYA 160 (433)
T ss_pred eeeeeeeccccccccccccccC-------------------CCCccceeeceeeccccceeee----------eeeeecc
Confidence 9999997643221 11111110 000000000000000 001111 222222
Q ss_pred cCCccCeEEEEEecCCeEEEEECCCcEEEEECCCC-eeeeee--c------CCCCeEEEEEeeCCCCEEEEEEcCCcEEE
Q 005352 351 HGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGND-HCLRVF--P------HSNYVTCVHFNPVDDNYFISGSIDGKVRI 421 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~-~~~~~~--~------h~~~V~~l~f~p~~~~~l~sgs~dg~v~i 421 (701)
.+|+-.|.+|.++.++..+.+..|=.|.+|+++-- ++.... + ...-|++..|+|...+.|+-.+..|+|++
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred ccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 46888999999999984445566788999998632 222222 1 23458899999988889999999999999
Q ss_pred EeCCCCcEEE----Ee-------------cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 422 WAVLSCHVVD----WV-------------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 422 wd~~~~~~~~----~~-------------~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
.|++...+.. ++ ..-..|..+.|+++|+++++-.. -+|++||+......... ..++.....
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t-~~vh~~lr~ 318 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVET-YPVHEYLRS 318 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceE-EeehHhHHH
Confidence 9998543321 11 11235888999999999998765 68999999654432221 111111000
Q ss_pred ---------CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 485 ---------PCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 485 ---------~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
....-..++|+- ++.++++|+..+..+++++.
T Consensus 319 kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred HHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCC
Confidence 011123456766 67899999999999999943
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.23 E-value=3.5e-09 Score=115.30 Aligned_cols=197 Identities=14% Similarity=0.164 Sum_probs=133.9
Q ss_pred EcCCccCeEEEEEecCC-eEEEEECC---CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEE-EEcCC--cEEEE
Q 005352 350 FHGHSGEILDLSWSKNN-YLLSASID---KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS-GSIDG--KVRIW 422 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~~-~l~s~s~d---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~s-gs~dg--~v~iw 422 (701)
+..+...+...+|+|++ +|+.++.. ..|++||+.+++......+...+.+++|+| +++.|+. .+.++ .|++|
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCCccEEEE
Confidence 34455678888999999 77666543 479999999887665555666777899999 8877664 44444 58999
Q ss_pred eCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEec-CC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 423 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
|+.+++...+..+........|+|+|+.|+..+. .+ .|.++++.+++... +. .....+....|+| ++
T Consensus 264 d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~---l~------~~~~~~~~~~~sp-dg 333 (417)
T TIGR02800 264 DLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR---LT------FRGGYNASPSWSP-DG 333 (417)
T ss_pred ECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---ee------cCCCCccCeEECC-CC
Confidence 9998877666655555667899999998877654 33 57777877654321 11 1123456778999 67
Q ss_pred CEEEEEECCC---cEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeCC
Q 005352 500 SKVMVSCADS---QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDS---NVYMWNCI 559 (701)
Q Consensus 500 ~~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg---~I~iWd~~ 559 (701)
.+++.++.++ .|.+||+.+....... .........|+|+|++|+.++.++ .+++.+..
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDGGGERVLT--DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCCCCeEEcc--CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 7787777765 7888888753322211 122345568999999998877654 35555543
No 245
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=2.8e-10 Score=119.89 Aligned_cols=252 Identities=16% Similarity=0.245 Sum_probs=177.2
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
......|++|+....|+|.||.||.++|-.+.+...-..... +. -..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-----------------la----------a~s------ 59 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-----------------LA----------AAS------ 59 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-----------------cc----------ccc------
Confidence 345678999999999999999999999999877531100000 00 000
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEee
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNP 404 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p 404 (701)
. -..-+++.||...|.-+.|+.+. .|-|+..+|.|.+|-+-.+....... ..+-|.+++|+.
T Consensus 60 ----------n----LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~ 125 (1189)
T KOG2041|consen 60 ----------N----LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL 125 (1189)
T ss_pred ----------c----cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC
Confidence 0 02235788999999999999888 88888899999999988776544332 567799999998
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCee---eeeeeEEeecc
Q 005352 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL---ELDAEICVHSK 481 (701)
Q Consensus 405 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~---~~~~~~~~~~~ 481 (701)
++..+.....||.|.+=.+...++....-.......+.|++|.+.++.+-.+|.+++||...+-. ...-.......
T Consensus 126 -dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~ 204 (1189)
T KOG2041|consen 126 -DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGI 204 (1189)
T ss_pred -CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeee
Confidence 99999999999999887776655442222223355789999999999999999999999875421 11111222222
Q ss_pred cCCCCCCeeEEEEe-------cCCCCEEEEEECCCcEEEEeCCc-cceeeecccCCCCeEEEEEecCCCEEEEEeCC
Q 005352 482 KKAPCKRITGFQFL-------PQDSSKVMVSCADSQVRILQGPN-VIGKYKGLRRSGNQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 482 ~~~~~~~i~~l~~~-------p~~~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D 550 (701)
......+|..+.|. |.+...++++-.+|.+.|..-.+ ....... ..-.+..+.|+++|..|+.++.|
T Consensus 205 ~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 205 FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCc
Confidence 23333456666664 23677899999999999876443 2222222 23678899999999999998865
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=4.5e-09 Score=114.54 Aligned_cols=218 Identities=16% Similarity=0.145 Sum_probs=132.8
Q ss_pred eccCCCcEEEEEEccCCCEEEEEeCC-C--cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 246 IQAHDGSILTMKFSPDGQYLASAGDD-G--VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~D-g--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+..+...+.+..|+|||++|+..+.+ + .|.+||+.+++...
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~------------------------------------ 256 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK------------------------------------ 256 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE------------------------------------
Confidence 44467789999999999998876543 3 47777876654210
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE-EEECCCc--EEEEECCCCeeeeeecCCCCeE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDKT--VRLWRVGNDHCLRVFPHSNYVT 398 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s~dg~--I~iWd~~~~~~~~~~~h~~~V~ 398 (701)
+..+. +.....+|+|++ .|+ +.+.++. |.+||+.+++......+.....
T Consensus 257 ------------------------lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~ 309 (448)
T PRK04792 257 ------------------------VTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDT 309 (448)
T ss_pred ------------------------ecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCcc
Confidence 11111 122357899999 454 5666775 7778988887655555556677
Q ss_pred EEEEeeCCCCEEEEEEc-CC--cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecC-C--cEEEEECCCCeeee
Q 005352 399 CVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM-G--DCRFYNVSDNHLEL 472 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~-dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d-g--~v~i~d~~~~~~~~ 472 (701)
..+|+| +++.|+..+. ++ .|.++|+.+++..............+|+|+|++|+..+.+ + .|.++|+.++....
T Consensus 310 ~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 310 EPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred ceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 889999 8888776553 33 4677788877765543333334557899999998876553 3 35567777665422
Q ss_pred eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCc--EEEEeCCccceeeecccCCCCeEEEEEec
Q 005352 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQ--VRILQGPNVIGKYKGLRRSGNQLSACFTS 539 (701)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~--I~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 539 (701)
. .. . .......|+| ++..|+..+ .++. +++++.... .......+.+.+...+|+|
T Consensus 389 l-----t~-~----~~d~~ps~sp-dG~~I~~~~~~~g~~~l~~~~~~G~-~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 389 L-----TS-T----RLDESPSVAP-NGTMVIYSTTYQGKQVLAAVSIDGR-FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred c-----cC-C----CCCCCceECC-CCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCCCcCCCccCC
Confidence 1 11 0 0112347999 455555444 4443 666666422 2222222345566677776
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=3.5e-09 Score=109.48 Aligned_cols=280 Identities=9% Similarity=0.025 Sum_probs=175.3
Q ss_pred CCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE
Q 005352 352 GHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~ 429 (701)
.|...-+.|..+|+| .+++|..--.|++||+.+-.....-.....+..+.....|-..++.-..|.+|-+...-..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~-- 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR-- 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe--
Confidence 467778899999999 6677788889999999876554333323333333332224445555566777766533211
Q ss_pred EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC
Q 005352 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (701)
Q Consensus 430 ~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg 509 (701)
......+..-..++++.-.--|++++....|+-+++..+...... ......++++..++ -..+|++|+.+|
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~--------~~~~~~lN~v~in~-~hgLla~Gt~~g 197 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPF--------ETDSGELNVVSINE-EHGLLACGTEDG 197 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccc--------ccccccceeeeecC-ccceEEecccCc
Confidence 111222334455666654444555555677888888888754321 22236688899998 678999999999
Q ss_pred cEEEEeCCcccee--ee---------cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccc
Q 005352 510 QVRILQGPNVIGK--YK---------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERF 578 (701)
Q Consensus 510 ~I~iwd~~~~~~~--~~---------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 578 (701)
.|-+||.+..... +. +......|+++.|+.+|-.+++|+.+|.|+|||+.+.++... -.+.
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~--------kdh~ 269 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV--------KDHG 269 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee--------cccC
Confidence 9999997642211 11 111234599999999999999999999999999998774221 1111
Q ss_pred cCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhh
Q 005352 579 TTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKS 658 (701)
Q Consensus 579 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~ 658 (701)
....+..+.| .+. ..+..+++ -..+.+++|+...+.....+...
T Consensus 270 ~e~pi~~l~~---------------------------~~~--~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt------ 313 (703)
T KOG2321|consen 270 YELPIKKLDW---------------------------QDT--DQQNKVVS-MDKRILKIWDECTGKPMASIEPT------ 313 (703)
T ss_pred Cccceeeecc---------------------------ccc--CCCceEEe-cchHHhhhcccccCCceeecccc------
Confidence 1222333333 222 01222332 24456789999888765544222
Q ss_pred hhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 659 QYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
..+..+++-++ +-++++|-.++.|-.|-
T Consensus 314 ------~~lND~C~~p~-sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 314 ------SDLNDFCFVPG-SGMFFTANESSKMHTYY 341 (703)
T ss_pred ------CCcCceeeecC-CceEEEecCCCcceeEE
Confidence 24555666677 77788999988887764
No 248
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.18 E-value=2.8e-09 Score=103.79 Aligned_cols=234 Identities=12% Similarity=0.207 Sum_probs=164.3
Q ss_pred ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005352 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (701)
Q Consensus 210 ~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~ 289 (701)
-+.++.++..+.|.++|||--.....--... ...-..+++++.+.+....|+.|-..|++.-+.+...-...
T Consensus 33 ~~~e~gv~~~s~drtvrv~lkrds~q~wpsI-----~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm--- 104 (404)
T KOG1409|consen 33 IPKEEGVISVSEDRTVRVWLKRDSGQYWPSI-----YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM--- 104 (404)
T ss_pred ccCCCCeEEccccceeeeEEeccccccCchh-----hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc---
Confidence 3455678889999999999643322211111 22245789999999999999999988988877765421000
Q ss_pred CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eE
Q 005352 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL 368 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l 368 (701)
...+.+..|...|..+-|+... .+
T Consensus 105 -------------------------------------------------------~~~r~~~~h~~~v~~~if~~~~e~V 129 (404)
T KOG1409|consen 105 -------------------------------------------------------TFLKDYLAHQARVSAIVFSLTHEWV 129 (404)
T ss_pred -------------------------------------------------------chhhhhhhhhcceeeEEecCCceeE
Confidence 2334456799999999998777 99
Q ss_pred EEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC---CCcEEEEecCCCcEEEEEEe
Q 005352 369 LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL---SCHVVDWVDIRQIVTAVCYR 445 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~---~~~~~~~~~~~~~i~~i~~s 445 (701)
++.+.|+.+.---.+.+..+..+......+++.+.- . +...|...|.|.+-.+. -+.+....+|.+.+++++|.
T Consensus 130 ~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~-~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd 206 (404)
T KOG1409|consen 130 LSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA-L--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD 206 (404)
T ss_pred EEeccccceEEEeeccCCcccceEeeccCCCCceee-E--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc
Confidence 999999888765666666666555444445555543 2 55556556665554443 23344677899999999999
Q ss_pred eCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 446 PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 446 p~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
|....+++|..|..+.+||+-..+...- ....+...+..++..+ .-..+++++.||.|.+|+++
T Consensus 207 ~~~~~LfSg~~d~~vi~wdigg~~g~~~-------el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 207 PGQRLLFSGASDHSVIMWDIGGRKGTAY-------ELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred CCCcEEEeccccCceEEEeccCCcceee-------eeccchhhhhhhhhhh-hheeeeeccCCCeEEEEecc
Confidence 9999999999999999999986654321 1233456677777766 56788999999999999843
No 249
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=5.3e-09 Score=115.63 Aligned_cols=193 Identities=20% Similarity=0.309 Sum_probs=147.0
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeee
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE 287 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~ 287 (701)
.+...+..+++.+.++.+.+|+.+....-. +.... -+.---...-+-++++.-++++|+.-+.|.+|+....+
T Consensus 94 ~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~-~i~~~--er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn---- 166 (967)
T KOG0974|consen 94 KLFEENKKIALVTSRNSLLIRDSKNSSVLS-KIQSD--ERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN---- 166 (967)
T ss_pred chhhhcceEEEEEcCceEEEEecccCceeh-hcCCC--ceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC----
Confidence 344455667788999999999876443211 11110 00001122234456777799999999999999986321
Q ss_pred ecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-
Q 005352 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN- 366 (701)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~- 366 (701)
++. .+.||.+.|.++.|+.+|
T Consensus 167 ---------------------------------------------------------~p~-~l~GHeG~iF~i~~s~dg~ 188 (967)
T KOG0974|consen 167 ---------------------------------------------------------KPI-RLKGHEGSIFSIVTSLDGR 188 (967)
T ss_pred ---------------------------------------------------------Ccc-eecccCCceEEEEEccCCc
Confidence 222 568999999999999999
Q ss_pred eEEEEECCCcEEEEECCCCeeee--eecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-CCcEEEEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLR--VFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQIVTAVC 443 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~--~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~i~~i~ 443 (701)
++++.|+|.++++|++.+.+... .|.|+..|..+.|.| + .+++++.|.+.++|+....+......| ...|..++
T Consensus 189 ~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~ 265 (967)
T KOG0974|consen 189 YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIA 265 (967)
T ss_pred EEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEecccceehhhhhhhhcceeEEE
Confidence 99999999999999999988765 567999999999998 4 999999999999997765554444444 35699999
Q ss_pred EeeCCCeEEEEecCCcEEEEECCCC
Q 005352 444 YRPDGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 444 ~sp~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
+.++...+++++.|+.+++|++...
T Consensus 266 ~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 266 VPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EcCCceEEEeeccCcchhhhhhhcc
Confidence 9999999999999999999998754
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=7.1e-09 Score=113.15 Aligned_cols=219 Identities=12% Similarity=0.108 Sum_probs=137.0
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
.+..|...+....|+|||+.|+..+.+ ..|.+|++.+++...
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----------------------------------- 237 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----------------------------------- 237 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-----------------------------------
Confidence 344577889999999999999877643 358888887654211
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE-EEECCC--cEEEEECCCCeeeeeecCCCCe
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDK--TVRLWRVGNDHCLRVFPHSNYV 397 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s~dg--~I~iWd~~~~~~~~~~~h~~~V 397 (701)
+....+.+....|+|+| .|+ +.+.++ .|.+||+.+++......+....
T Consensus 238 ----------------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~ 289 (430)
T PRK00178 238 ----------------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAID 289 (430)
T ss_pred ----------------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCc
Confidence 11112234467899999 554 555555 5888899988766555555566
Q ss_pred EEEEEeeCCCCEEEEEEc-CC--cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecC-C--cEEEEECCCCeee
Q 005352 398 TCVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM-G--DCRFYNVSDNHLE 471 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~-dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d-g--~v~i~d~~~~~~~ 471 (701)
....|+| +++.|+..+. +| .|+++|+.+++...+...........|+|+|+.++..+.. + .|.+||+.++...
T Consensus 290 ~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~ 368 (430)
T PRK00178 290 TEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR 368 (430)
T ss_pred CCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE
Confidence 7789999 8887776553 33 5777888887765444333334567899999999887653 3 4788898876543
Q ss_pred eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-CC--cEEEEeCCccceeeecccCCCCeEEEEEec
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DS--QVRILQGPNVIGKYKGLRRSGNQLSACFTS 539 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 539 (701)
.. .. . .......|+| ++..++..+. ++ .|.+++...... .....+.+.+...+|+|
T Consensus 369 ~l-----t~-~----~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~g~~~-~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 369 IL-----TD-T----SLDESPSVAP-NGTMLIYATRQQGRGVLMLVSINGRVR-LPLPTAQGEVREPSWSP 427 (430)
T ss_pred Ec-----cC-C----CCCCCceECC-CCCEEEEEEecCCceEEEEEECCCCce-EECcCCCCCcCCCccCC
Confidence 21 11 1 1112457999 5666665554 33 466666643222 11112344556666665
No 251
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=1.2e-07 Score=94.04 Aligned_cols=276 Identities=15% Similarity=0.224 Sum_probs=185.5
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecC-eeeeeecCCCCCCce
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVED-ERLTEVDIPEIDPSC 297 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~-~~~~~~~~~~~~~~~ 297 (701)
++.|.+|++.....++..+. +-++.+.++-|+|+|++++|.++-.+ |.|--|.++.. ..+..+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~----~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln-------- 82 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ----LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN-------- 82 (346)
T ss_pred CCceEEEEEeCcccccchhh----hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee--------
Confidence 67799999986665555432 34577889999999999999988664 66777776542 1111000
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC-CC
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-DK 375 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~-dg 375 (701)
...+.++ +-..+++++++ +|+++.. -|
T Consensus 83 -------------------------------------------------~~~~~g~--~p~yvsvd~~g~~vf~AnY~~g 111 (346)
T COG2706 83 -------------------------------------------------RQTLPGS--PPCYVSVDEDGRFVFVANYHSG 111 (346)
T ss_pred -------------------------------------------------ccccCCC--CCeEEEECCCCCEEEEEEccCc
Confidence 0111222 22778899999 7776664 58
Q ss_pred cEEEEECCC-Ce---eeeeecCCCC----------eEEEEEeeCCCCEEEEEEcC-CcEEEEeCCCCcEEE----EecCC
Q 005352 376 TVRLWRVGN-DH---CLRVFPHSNY----------VTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVVD----WVDIR 436 (701)
Q Consensus 376 ~I~iWd~~~-~~---~~~~~~h~~~----------V~~l~f~p~~~~~l~sgs~d-g~v~iwd~~~~~~~~----~~~~~ 436 (701)
.|.++-++. +. .+..+.|.+. +.+..|.| ++++|++.... -.|.+|++..+++.. .....
T Consensus 112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCC
Confidence 899998866 33 2344456655 88999999 99998887632 359999999876542 22445
Q ss_pred CcEEEEEEeeCCCeEEEEec-CCcEEEEECCCC--eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-CCcEE
Q 005352 437 QIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDN--HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVR 512 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-dg~I~ 512 (701)
.....|.|+|++++..+.++ +++|.+|..... ++.....+...............|.++| ++++|.++.. ...|.
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNRg~dsI~ 269 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNRGHDSIA 269 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEecCCCCeEE
Confidence 66889999999999887665 899999999874 3322222222222233456677888999 7888777654 45788
Q ss_pred EEeCCccceeeec----ccCCCCeEEEEEecCCCEEEEEeCC-CcEEEEeCCCCC
Q 005352 513 ILQGPNVIGKYKG----LRRSGNQLSACFTSDGKHIVSAGED-SNVYMWNCIGHE 562 (701)
Q Consensus 513 iwd~~~~~~~~~~----~~~~~~v~~l~~s~dg~~l~sgs~D-g~I~iWd~~~~~ 562 (701)
+|.+......+.. ..+........|++.|++|++++.+ ..|.+|.++...
T Consensus 270 ~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 270 VFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 8876643222221 1233446788999999999999866 458888776543
No 252
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.15 E-value=4.8e-09 Score=100.24 Aligned_cols=199 Identities=14% Similarity=0.159 Sum_probs=141.0
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeee--eec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc-EE
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR--VFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VV 430 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~--~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-~~ 430 (701)
...++.|++.+ .++++-.+|.+.+-+........ ..+ |.-.+....|+-.+.+++.+|+.|+.+..||++... .+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 35678899888 88888889999866655554433 444 888999999998788999999999999999999433 22
Q ss_pred --EEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 431 --DWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 431 --~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
....|...|.+|.-+| .+.++++|+.|-.|++||.++....+ ......+.|..+..+|.....+++++.
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl--------~~~~v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL--------FKAKVGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc--------ccCccccceEEEEecchhhhHHHHHHH
Confidence 2345677788887776 67899999999999999999543221 122233789999999976666666666
Q ss_pred CCcEEEEeCCccceee----e-cccCCCCeEEEEEecCCCEEEEEe-CCCcEE-EEeCCCCC
Q 005352 508 DSQVRILQGPNVIGKY----K-GLRRSGNQLSACFTSDGKHIVSAG-EDSNVY-MWNCIGHE 562 (701)
Q Consensus 508 dg~I~iwd~~~~~~~~----~-~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~-iWd~~~~~ 562 (701)
-+-.+|.+..+....+ . ...|.+-+....|.....+|+|++ .|..++ +|-.-++.
T Consensus 275 h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 275 HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred hcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 6667777665333221 1 122666666667755556788875 566655 78655544
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=1.6e-08 Score=110.42 Aligned_cols=202 Identities=13% Similarity=0.115 Sum_probs=133.4
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEEEECC---CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE-EEEcCC--cE
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLSASID---KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDG--KV 419 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s~s~d---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~dg--~v 419 (701)
.+.+..+...+....|+|+| .|+..+.+ ..|.+||+.+++........+.+....|+| +++.|+ +...+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCCCceE
Confidence 34555677789999999999 77665543 368999999887655544455566789999 888776 444455 58
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEec-CC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 420 RIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 420 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
++||+.+++...+..+........|+|+|+.|+..+. +| .|+++++.+++... +... ........|+|
T Consensus 270 y~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~---lt~~------~~~~~~~~~Sp 340 (430)
T PRK00178 270 YVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER---VTFV------GNYNARPRLSA 340 (430)
T ss_pred EEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---eecC------CCCccceEECC
Confidence 8889998887766666666777899999998877654 33 47777776665321 1110 11233567899
Q ss_pred CCCCEEEEEEC-CC--cEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCC
Q 005352 497 QDSSKVMVSCA-DS--QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGED---SNVYMWNCIGH 561 (701)
Q Consensus 497 ~~~~~l~~~s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D---g~I~iWd~~~~ 561 (701)
+++.++..+. ++ .|.++|+.+....... .........|+|||++|+..+.+ ..|++++++..
T Consensus 341 -dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt--~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 341 -DGKTLVMVHRQDGNFHVAAQDLQRGSVRILT--DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred -CCCEEEEEEccCCceEEEEEECCCCCEEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 5666666554 33 5788888754332221 11222356899999999876644 34677776543
No 254
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=5.5e-10 Score=114.36 Aligned_cols=272 Identities=17% Similarity=0.231 Sum_probs=181.7
Q ss_pred CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 212 ~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
+++.++.+++|.+|++|.++....+.....+.-++++|+.+|..+.|-.+.++++++ ||.|++||.--+..+....-
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~d- 822 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMED- 822 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhc-
Confidence 456678899999999999987666665555566889999999999999999998887 78999999766543321110
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCe-EEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNY-LLS 370 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~-l~s 370 (701)
.+ -.+..+.|.|+.--.... ++-
T Consensus 823 -----------------------------------------------------ap---k~~a~~~ikcl~nv~~~iliAg 846 (1034)
T KOG4190|consen 823 -----------------------------------------------------AP---KEGAGGNIKCLENVDRHILIAG 846 (1034)
T ss_pred -----------------------------------------------------Cc---ccCCCceeEecccCcchheeee
Confidence 00 011223344442111123 344
Q ss_pred EECCCcEEEEECCCCeeeeeec------CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEE
Q 005352 371 ASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVC 443 (701)
Q Consensus 371 ~s~dg~I~iWd~~~~~~~~~~~------h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~ 443 (701)
++...+|+++|.+..+.+..++ .+..+.+++..+ .++.++++-.+|.|.+.|.++++++. |.........++
T Consensus 847 csaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla 925 (1034)
T KOG4190|consen 847 CSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA 925 (1034)
T ss_pred ccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc
Confidence 4788999999999987766664 346689999999 99999999999999999999999874 444444444443
Q ss_pred EeeCCCeEEEEecCCcEEE-EECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC-----
Q 005352 444 YRPDGQGGIVGSMMGDCRF-YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP----- 517 (701)
Q Consensus 444 ~sp~g~~l~~gs~dg~v~i-~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~----- 517 (701)
.|..+.++....|.++.+ |-..++...+..+ .+..+. .|...-+.-+++....+.+.+|--.
T Consensus 926 -apsdq~L~~saldHslaVnWhaldgimh~q~k--------pppepa---hflqsvgpSLV~a~~Gn~lgVYad~a~~ha 993 (1034)
T KOG4190|consen 926 -APSDQALAQSALDHSLAVNWHALDGIMHLQDK--------PPPEPA---HFLQSVGPSLVTAQNGNILGVYADSAELHA 993 (1034)
T ss_pred -CchhHHHHhhcccceeEeeehhcCCeeeeccC--------CCCcch---hhhhccCceeEEeccCcEEEEEecchhhhh
Confidence 355667777777888887 8766654332211 111111 1222234567777777788888532
Q ss_pred -ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 005352 518 -NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYM 555 (701)
Q Consensus 518 -~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i 555 (701)
....+.......+..++++--|-..-++.|++.|.|.+
T Consensus 994 ~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 994 ESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11222333335567788888887777788888888765
No 255
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.10 E-value=6e-08 Score=99.44 Aligned_cols=311 Identities=13% Similarity=0.180 Sum_probs=189.6
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCC---------------
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG--------------- 272 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--------------- 272 (701)
+.++.+.+++ ......|.+|...... .+..+ -...|..+.|+|.++||.|-+..+
T Consensus 39 ~~SP~G~~l~-~~~~~~V~~~~g~~~~-~l~~~--------~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 39 SESPLGTYLF-SEHAAGVECWGGPSKA-KLVRF--------RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred eecCcchhee-hhhccceEEccccchh-heeee--------ecCCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 3445555444 3445678899754332 11111 224589999999999999976544
Q ss_pred cEEEEEeecCeeeeeecCCCCC--Cc-eeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEE
Q 005352 273 VVRLWQVVEDERLTEVDIPEID--PS-CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHE 349 (701)
Q Consensus 273 ~I~iWd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (701)
.+.+||+.++..+..+.....+ .. .+.|..+...... + ....+.++.. .-.+...+.+.
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR-v----------------v~~sl~i~e~-t~n~~~~p~~~ 170 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVAR-V----------------VGSSLYIHEI-TDNIEEHPFKN 170 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhh-h----------------ccCeEEEEec-CCccccCchhh
Confidence 4999999999988887765543 11 2222222211100 0 0011111111 11111223333
Q ss_pred EcCCccCeEEEEEecCC---eEEE-----EECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEE------
Q 005352 350 FHGHSGEILDLSWSKNN---YLLS-----ASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS------ 414 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~~---~l~s-----~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs------ 414 (701)
++ ...|+...|+|.+ .|+. .+.++++++|.+..+..+.+-. ..-.=..+.|++ .+++|+.--
T Consensus 171 lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ks 247 (561)
T COG5354 171 LR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKS 247 (561)
T ss_pred cc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeec
Confidence 32 3568888999974 4342 4667899999998776665443 122223577777 666655321
Q ss_pred -----cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEE--ecCCcEEEEECCCCeeeeeeeEEeecccCCCCC
Q 005352 415 -----IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG--SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 415 -----~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g--s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 487 (701)
....++|+++....+.......++|...+|.|.++.+++. ...-.+.++|++.+ +... .+..
T Consensus 248 nKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~----------~Pe~ 316 (561)
T COG5354 248 NKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY----------FPEQ 316 (561)
T ss_pred ccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe----------cCCc
Confidence 2356889998855444444778999999999988876664 46888999999876 2211 1112
Q ss_pred CeeEEEEecCCCCEEEEEEC---CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe------CCCcEEEEeC
Q 005352 488 RITGFQFLPQDSSKVMVSCA---DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG------EDSNVYMWNC 558 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~---dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs------~Dg~I~iWd~ 558 (701)
.=+-+.|+| ...++++++. .|.|-+||........... ......-+.|+||++++.+.. .|..|.||++
T Consensus 317 ~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~~~-~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 317 KRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAGAF-NGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred ccccccccC-cccEEEEecCCccccceEEeccCCceEEEEEe-ecCCceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 234567888 6677777665 4789999987554444221 233445678999999998773 4788999999
Q ss_pred CCCC
Q 005352 559 IGHE 562 (701)
Q Consensus 559 ~~~~ 562 (701)
....
T Consensus 395 ~g~~ 398 (561)
T COG5354 395 YGAK 398 (561)
T ss_pred cCch
Confidence 8765
No 256
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.09 E-value=1.4e-07 Score=110.22 Aligned_cols=331 Identities=14% Similarity=0.152 Sum_probs=196.1
Q ss_pred CcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceec-cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEee
Q 005352 204 GEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ-AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (701)
Q Consensus 204 ~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 280 (701)
+.+..+.+- .+.++++..+|.|.+..++...... . -++- .-...|.+++||||+..||.+..+++|.+-. .
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~----~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~ 149 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDED-E----IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-R 149 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-e----eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-c
Confidence 344455443 3456668888988888433211000 0 1111 2356899999999999999999899888774 4
Q ss_pred cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEE
Q 005352 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (701)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 360 (701)
+-..+.+..+....... .....+.|++.....-....+.. .. ..-++..- ......+. +.+.-..|
T Consensus 150 ~fd~i~E~~l~~~~~~~--------~~~VsVGWGkKeTQF~Gs~gK~a-a~-~~~~p~~~---~~d~~~~s-~dd~~~~I 215 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGE--------SKHVSVGWGKKETQFHGSAGKAA-AR-QLRDPTVP---KVDEGKLS-WDDGRVRI 215 (928)
T ss_pred cceEEEEeecCccccCC--------CceeeeccCcccCccCcchhhhh-hh-hccCCCCC---ccccCccc-cCCCceEE
Confidence 44555554443222110 11111222221111000000000 00 00000000 00112223 45566789
Q ss_pred EEecCC-eEEEEEC---C---CcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEc---CCcEEEEeCCCCcE
Q 005352 361 SWSKNN-YLLSASI---D---KTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI---DGKVRIWAVLSCHV 429 (701)
Q Consensus 361 ~~s~~~-~l~s~s~---d---g~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~---dg~v~iwd~~~~~~ 429 (701)
+|-.|| +|++.+. . ..|+||+-+ |....+.. -.+--.+++|.| .|++||+.-. ...|.+|.-+.-+.
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrh 293 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRH 293 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEe
Confidence 999999 8887764 2 579999965 55444433 334456789999 9999988764 34567776443222
Q ss_pred EE----EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE
Q 005352 430 VD----WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 430 ~~----~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
-. .......|..+.|++++..|++...+. |.+|-..+.+..++..+.... ...+..+.|+|.++..|.+.
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-----~~~~~~~~Wdpe~p~~L~v~ 367 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-----SESVNFVKWDPEKPLRLHVL 367 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-----CCCCCceEECCCCCCEEEEE
Confidence 21 113356799999999999999977655 999999998877666554332 12344499999888888888
Q ss_pred ECCCcEEEEeCC-----------------------ccce------------eeecccCCCCeEEEEEecCCCEEEEEeCC
Q 005352 506 CADSQVRILQGP-----------------------NVIG------------KYKGLRRSGNQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 506 s~dg~I~iwd~~-----------------------~~~~------------~~~~~~~~~~v~~l~~s~dg~~l~sgs~D 550 (701)
+.++.+..++.. +... .........+|.+++|++++..+++-..|
T Consensus 368 t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d 447 (928)
T PF04762_consen 368 TSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSD 447 (928)
T ss_pred ecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECC
Confidence 887777665421 0000 00011245789999999999889999999
Q ss_pred CcEEEEeCCCCC
Q 005352 551 SNVYMWNCIGHE 562 (701)
Q Consensus 551 g~I~iWd~~~~~ 562 (701)
|.|.+|......
T Consensus 448 ~~l~~~~~~~~~ 459 (928)
T PF04762_consen 448 GSLSIYEWDLKN 459 (928)
T ss_pred CCEEEEEecCCC
Confidence 999999865543
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.05 E-value=4.8e-07 Score=93.31 Aligned_cols=271 Identities=11% Similarity=0.064 Sum_probs=167.4
Q ss_pred ceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC----------CCcEEEEEeecCeeeeeecCCC
Q 005352 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD----------DGVVRLWQVVEDERLTEVDIPE 292 (701)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----------Dg~I~iWd~~~~~~~~~~~~~~ 292 (701)
++|.|.|..... ... .+..-..+- .+ +||||+.|+.+.. +..|.+||..+.+.+.++.++.
T Consensus 27 ~~v~ViD~~~~~--v~g-----~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGR--VLG-----MTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCE--EEE-----EEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 788888865432 111 122122222 24 8999998877765 7899999999998887776543
Q ss_pred CCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEE
Q 005352 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA 371 (701)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~ 371 (701)
.+.. . ....-..++++|+| +|+..
T Consensus 98 ~p~~------------------------------------------------------~-~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 98 GPRF------------------------------------------------------L-VGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred Cchh------------------------------------------------------h-ccCccceEEECCCCCEEEEe
Confidence 2110 0 01123456889999 66655
Q ss_pred E-C-CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-CcEE----EEecC-CCcE-EEE
Q 005352 372 S-I-DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVV----DWVDI-RQIV-TAV 442 (701)
Q Consensus 372 s-~-dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-~~~~----~~~~~-~~~i-~~i 442 (701)
. . +..|.+.|+.+++.+..+.-.+...-...++ .. +.+-+.||......+.+ ++.. ..+.. ..++ ..-
T Consensus 123 n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e--~~-~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP 199 (352)
T TIGR02658 123 QFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN--DT-FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP 199 (352)
T ss_pred cCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC--Cc-cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC
Confidence 5 3 7899999999999999888655444333332 22 22334566665544432 2211 11111 0010 001
Q ss_pred EEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc----CCCCCCeeEEEEecCCCCEEEEEE----------C
Q 005352 443 CYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK----KAPCKRITGFQFLPQDSSKVMVSC----------A 507 (701)
Q Consensus 443 ~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~~p~~~~~l~~~s----------~ 507 (701)
.|.+ +|+++++... |.|.+.|+..........+...... .-....+.-++++| +++.+++.. .
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCC
Confidence 4456 8888888877 9999999876554333333222211 12334455599999 455555532 1
Q ss_pred CCcEEEEeCCccceeeecccCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCCC
Q 005352 508 DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK-HIVSAG-EDSNVYMWNCIGHEE 563 (701)
Q Consensus 508 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~sgs-~Dg~I~iWd~~~~~~ 563 (701)
.+.|.++|..+........ -...+..++++||++ +|++.. .++.|.+.|..+++.
T Consensus 278 ~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 2579999998766655543 346889999999999 888776 578899999988873
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.05 E-value=4.4e-08 Score=102.42 Aligned_cols=139 Identities=15% Similarity=0.200 Sum_probs=114.2
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAV 442 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i 442 (701)
.++-|...|.|.+|++..++....+. |.+.|.++.++. +-..|.+++.|+.+..|+...++.+. +......+.++
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl 150 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL 150 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence 78888899999999999999888876 999999999998 88899999999999999999988774 55567789999
Q ss_pred EEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC----CCCEEEEE-ECCCcEEEEeC
Q 005352 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ----DSSKVMVS-CADSQVRILQG 516 (701)
Q Consensus 443 ~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~----~~~~l~~~-s~dg~I~iwd~ 516 (701)
+++|||..+++++ +.|++||+++.+... ....|...|.++.|... .+.+++++ ..+..+.+|-.
T Consensus 151 ~is~D~~~l~~as--~~ik~~~~~~kevv~--------~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 151 CISPDGKILLTAS--RQIKVLDIETKEVVI--------TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred EEcCCCCEEEecc--ceEEEEEccCceEEE--------EecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 9999999999987 689999999987643 25567788999998763 14455544 34566666654
No 259
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.02 E-value=1.1e-07 Score=97.51 Aligned_cols=235 Identities=14% Similarity=0.182 Sum_probs=151.3
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
-.-++..++|||.|.+|++....| |.+|.-.....+..+.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--------------------------------------- 70 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--------------------------------------- 70 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeee---------------------------------------
Confidence 456889999999999999998765 8899866543222221
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECC---------------CcEEEEECCCCeeeeeec
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID---------------KTVRLWRVGNDHCLRVFP 392 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~d---------------g~I~iWd~~~~~~~~~~~ 392 (701)
...|..+.|+|++ ||.+=+.. ..+.+||+.++..+..|.
T Consensus 71 -------------------------~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~ 125 (561)
T COG5354 71 -------------------------HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN 125 (561)
T ss_pred -------------------------cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeecc
Confidence 1356677777777 66665433 359999999999999887
Q ss_pred CC-CC--eE-EEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--EEecC-CCcEEEEEEeeCCC--eEEE-----EecCC
Q 005352 393 HS-NY--VT-CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDI-RQIVTAVCYRPDGQ--GGIV-----GSMMG 458 (701)
Q Consensus 393 h~-~~--V~-~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~~-~~~i~~i~~sp~g~--~l~~-----gs~dg 458 (701)
.. .+ .. -+.|+- ++++++-. ....++|+++ +.... ..... ...|....|+|.++ .|+. +...+
T Consensus 126 ~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa 202 (561)
T COG5354 126 GISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPA 202 (561)
T ss_pred ccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCc
Confidence 22 22 33 678887 77776655 3457999997 44322 22222 25688888999643 3343 45678
Q ss_pred cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-----------CCCcEEEEeCCccceeeeccc
Q 005352 459 DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-----------ADSQVRILQGPNVIGKYKGLR 527 (701)
Q Consensus 459 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-----------~dg~I~iwd~~~~~~~~~~~~ 527 (701)
.+++|.+..+.......+.-. .-..+.|.+ .+.++++-. ....++|+++......... .
T Consensus 203 ~~~i~sIp~~s~l~tk~lfk~--------~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~ 272 (561)
T COG5354 203 MVRILSIPKNSVLVTKNLFKV--------SGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-D 272 (561)
T ss_pred EEEEEEccCCCeeeeeeeEee--------cccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeecccccceec-c
Confidence 899999986655433322111 123456666 344443311 2356788887743322221 3
Q ss_pred CCCCeEEEEEecCCCEEEEE--eCCCcEEEEeCCCC
Q 005352 528 RSGNQLSACFTSDGKHIVSA--GEDSNVYMWNCIGH 561 (701)
Q Consensus 528 ~~~~v~~l~~s~dg~~l~sg--s~Dg~I~iWd~~~~ 561 (701)
..++|...+|.|.++.+++. -.+..+.++++...
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeecccccc
Confidence 57899999999988776554 47788888887754
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=5.2e-08 Score=106.23 Aligned_cols=201 Identities=13% Similarity=0.154 Sum_probs=126.1
Q ss_pred EEEcCCccCeEEEEEecCC-eEEEEEC-CC--cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEE-EEcCCc--EE
Q 005352 348 HEFHGHSGEILDLSWSKNN-YLLSASI-DK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS-GSIDGK--VR 420 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~-~l~s~s~-dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~s-gs~dg~--v~ 420 (701)
+.+..+...+....|+|+| .|+..+. ++ .|.+||+.+++........+.....+|+| +++.|+. ...+|. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEE
Confidence 3444566788899999999 6665543 33 58889998887544433344455789999 8887764 555664 78
Q ss_pred EEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEec-CC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 421 IWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 421 iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
++|+.+++......+.......+|+|||+.|+..+. ++ .|.++|+.+++... +.. .........|+|
T Consensus 290 ~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~---Lt~------~g~~~~~~~~Sp- 359 (448)
T PRK04792 290 VVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR---LTF------EGEQNLGGSITP- 359 (448)
T ss_pred EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---Eec------CCCCCcCeeECC-
Confidence 889988887766666666778899999998877654 33 46666776654321 111 111223468999
Q ss_pred CCCEEEEEEC-CC--cEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCC-Cc--EEEEeCCCC
Q 005352 498 DSSKVMVSCA-DS--QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGED-SN--VYMWNCIGH 561 (701)
Q Consensus 498 ~~~~l~~~s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D-g~--I~iWd~~~~ 561 (701)
+++.++..+. ++ .|.++|+.+....... .........|+|||++|+..+.+ +. +++++.+..
T Consensus 360 DG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt--~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 360 DGRSMIMVNRTNGKFNIARQDLETGAMQVLT--STRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CCCEEEEEEecCCceEEEEEECCCCCeEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 5566655544 44 3555676544322211 11122345799999988766543 33 677776433
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=2.3e-09 Score=123.61 Aligned_cols=191 Identities=13% Similarity=0.175 Sum_probs=153.2
Q ss_pred cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC
Q 005352 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~ 427 (701)
+.|-..|.++.-+|.. +.+||+.||.|++|....++.+..+. .+..|+.+.|+. .|+.+..+..||.+.+|.+...
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCCc
Confidence 3455677888878887 99999999999999999998888876 447899999998 8999999999999999999977
Q ss_pred cEEEEecCCCcEEEEEEeeCCCeEEEEe---cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGS---MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 428 ~~~~~~~~~~~i~~i~~sp~g~~l~~gs---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
....+..|....+.+.|-. ..+++++ .++.+.+||..-..... .+ ...|...++++++.| ..++|++
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s----~v---~~~H~~gaT~l~~~P-~~qllis 2353 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS----LV---HTCHDGGATVLAYAP-KHQLLIS 2353 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc----ee---eeecCCCceEEEEcC-cceEEEe
Confidence 7778888888888888875 5566653 47889999976443221 11 266788999999999 7899999
Q ss_pred EECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 505 SCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 505 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|+.+|.|++||++......... . ++ ...++++|+..|.|+||++....
T Consensus 2354 ggr~G~v~l~D~rqrql~h~~~-----~----~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQ-----A----LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred cCCcCcEEEeehHHHHHHHHhh-----h----hh-hhheeeccCcccceEEEEccccc
Confidence 9999999999998544332221 1 44 56799999999999999998765
No 262
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.98 E-value=3.9e-07 Score=97.65 Aligned_cols=266 Identities=13% Similarity=0.080 Sum_probs=158.3
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEE----
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT---- 440 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~---- 440 (701)
++.++.++.++.+..+|..+++.+........+.+.-.. .+..++.+..++.|..||..+++.+-......+..
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 447888889999999999999998877655544332222 34567777889999999999998764443322211
Q ss_pred --EEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec-CCCCEEEEEECCCcEEEEeCC
Q 005352 441 --AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP-QDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 441 --~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p-~~~~~l~~~s~dg~I~iwd~~ 517 (701)
+... .+..++++..+|.+..+|+.+++............. ........+.-.| -.+..+++++.++.++.||..
T Consensus 183 ~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~-~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~ 259 (377)
T TIGR03300 183 SASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR-TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLR 259 (377)
T ss_pred CCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC-CchhhhhccCCccEEECCEEEEEEcCCEEEEEECC
Confidence 1111 134778888899999999988876543322110000 0000000000001 024578888889999999998
Q ss_pred ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCC
Q 005352 518 NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAE 597 (701)
Q Consensus 518 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 597 (701)
+......... ...... ...+.+|+.++.||.|+.+|..+++.. |.-....
T Consensus 260 tG~~~W~~~~--~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~-----------------------W~~~~~~--- 309 (377)
T TIGR03300 260 SGRVLWKRDA--SSYQGP--AVDDNRLYVTDADGVVVALDRRSGSEL-----------------------WKNDELK--- 309 (377)
T ss_pred CCcEEEeecc--CCccCc--eEeCCEEEEECCCCeEEEEECCCCcEE-----------------------Ecccccc---
Confidence 7655544321 111122 235678888889999999999888621 1100000
Q ss_pred CCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCc
Q 005352 598 KEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWG 677 (701)
Q Consensus 598 ~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 677 (701)
.. ...+|. ..+..++..+.++.+..++..+.+.+.++..+. ..+....... +
T Consensus 310 ---------~~----~~ssp~--i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~-----------~~~~~sp~~~--~ 361 (377)
T TIGR03300 310 ---------YR----QLTAPA--VVGGYLVVGDFEGYLHWLSREDGSFVARLKTDG-----------SGIASPPVVV--G 361 (377)
T ss_pred ---------CC----ccccCE--EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC-----------CccccCCEEE--C
Confidence 00 001221 124466667788888888888888776664441 1222222222 3
Q ss_pred cEEEEecCCCeEeEEe
Q 005352 678 LVIVTAGWDGRIRSFL 693 (701)
Q Consensus 678 ~~ivTgg~DG~Irvw~ 693 (701)
..|+.++.||.|..|+
T Consensus 362 ~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 362 DGLLVQTRDGDLYAFR 377 (377)
T ss_pred CEEEEEeCCceEEEeC
Confidence 4578888999998875
No 263
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.97 E-value=1.7e-07 Score=88.63 Aligned_cols=190 Identities=14% Similarity=0.058 Sum_probs=130.7
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc--EE--EEecCCCcEEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VV--DWVDIRQIVTA 441 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~--~~--~~~~~~~~i~~ 441 (701)
.+..++.|.++++.++.-+....... ..-.+.++++++ ++.++++.+....|..|.+.... .+ ........-.+
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY 208 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence 57778889999988876554333222 113488999999 99999999999999999887542 22 22334455678
Q ss_pred EEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC-CEEEEEECCCcEEEEeCCccc
Q 005352 442 VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS-SKVMVSCADSQVRILQGPNVI 520 (701)
Q Consensus 442 i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~-~~l~~~s~dg~I~iwd~~~~~ 520 (701)
.+|+.....+|+++.||++.|||++....... .....+..|.+.+..+.|++.+. .+|+..-.-+.+.+.|+++..
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~---~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMA---EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchh---hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 88999999999999999999999987553322 12223455888999999998433 355555557889999998654
Q ss_pred eeeec-------ccCC-CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 521 GKYKG-------LRRS-GNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 521 ~~~~~-------~~~~-~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
..... ..|. ..|....|+.++.-+.+.+++ .++-|++...
T Consensus 286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 286 NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred eeeEEecCccccccccccccccccccCCCcccccccch-hhheeecccc
Confidence 32211 1122 347777888777767666654 4566666544
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.97 E-value=2.2e-08 Score=95.85 Aligned_cols=191 Identities=14% Similarity=0.145 Sum_probs=132.1
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCC---cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDG---SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE 292 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~ 292 (701)
++.+...|.|.++........ -. .+.+..-.- .-.++.|++.+.-++++-.+|.+.+-+......
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss--~~--L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l-------- 155 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESS--VH--LRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVL-------- 155 (339)
T ss_pred eeeccccceEEEEeeccceee--ee--ecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeee--------
Confidence 344666788888865432210 00 011111111 245778888888888888888887444322210
Q ss_pred CCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEE
Q 005352 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLS 370 (701)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s 370 (701)
+.++..+.|.-++.-.+|+... .+++
T Consensus 156 ----------------------------------------------------e~vq~wk~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 156 ----------------------------------------------------EKVQTWKVHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred ----------------------------------------------------eecccccccceeeeeeecccCCCceEEe
Confidence 3345678899999999998765 8999
Q ss_pred EECCCcEEEEECC-CCeeeeee--cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC-CCcEEEEecCCCcEEEEEEee
Q 005352 371 ASIDKTVRLWRVG-NDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-SCHVVDWVDIRQIVTAVCYRP 446 (701)
Q Consensus 371 ~s~dg~I~iWd~~-~~~~~~~~--~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~-~~~~~~~~~~~~~i~~i~~sp 446 (701)
|+.|+.+..||++ .++++..- .|...|.+|.-+|..+.++++|+.|-.|++||.+ .++.+......+.|..+..+|
T Consensus 184 GgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p 263 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHP 263 (339)
T ss_pred cCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecc
Confidence 9999999999999 34444432 2888999999998788999999999999999999 466666666678999999999
Q ss_pred CCC--eEEEEecCCcEEEEECCCCeee
Q 005352 447 DGQ--GGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 447 ~g~--~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
.-. .|+++-.+| .++.+.+.+...
T Consensus 264 ~~~~~lL~~CMh~G-~ki~~~~~~~~e 289 (339)
T KOG0280|consen 264 EIFHRLLAACMHNG-AKILDSSDKVLE 289 (339)
T ss_pred hhhhHHHHHHHhcC-ceEEEecccccc
Confidence 533 344444443 677777665543
No 265
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=4.4e-08 Score=103.67 Aligned_cols=278 Identities=14% Similarity=0.187 Sum_probs=185.5
Q ss_pred Ccceeeec--CccccccccccceEEEEEccCccc--------hhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCc
Q 005352 204 GEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSK--------ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGV 273 (701)
Q Consensus 204 ~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~--------~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 273 (701)
..-.++.. ...+++.|+.||.++|-.+..... ..+.+.+.|.+.||++.|.-+.|+.+.+.|-|...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 33344444 456788899999999998865432 23345677899999999999999999999999999999
Q ss_pred EEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCC
Q 005352 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (701)
Q Consensus 274 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 353 (701)
|.||-+-.+....+.. -.-.
T Consensus 95 IiVWmlykgsW~EEMi------------------------------------------------------------NnRn 114 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMI------------------------------------------------------------NNRN 114 (1189)
T ss_pred EEEEeeecccHHHHHh------------------------------------------------------------hCcC
Confidence 9999998775322110 0123
Q ss_pred ccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc----
Q 005352 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH---- 428 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~---- 428 (701)
++.|.+++|..+| .++..-.||.|.+=.+........--.......+.|++ |...++.+-.+|.+.+||....-
T Consensus 115 KSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl 193 (1189)
T KOG2041|consen 115 KSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKL 193 (1189)
T ss_pred ccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecc-cHHHHHhhhcCCcEEEecccccHHHhh
Confidence 4568899999999 88888889988877665443222111222345788999 88888888889999999976431
Q ss_pred ---E-EEE----ecCCCcEEEEEEe--------eCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEE
Q 005352 429 ---V-VDW----VDIRQIVTAVCYR--------PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (701)
Q Consensus 429 ---~-~~~----~~~~~~i~~i~~s--------p~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l 492 (701)
+ +.. ......|..++|. |+...|+++..+|.+.+..-.+...... ....-.+.+.
T Consensus 194 ~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv---------~dtgm~~vga 264 (1189)
T KOG2041|consen 194 EKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVV---------VDTGMKIVGA 264 (1189)
T ss_pred hhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeE---------EecccEeecc
Confidence 1 111 1122346666664 4777899999999998876554332211 1112468889
Q ss_pred EEecCCCCEEEEEECC---------CcEEEEeCC-ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 005352 493 QFLPQDSSKVMVSCAD---------SQVRILQGP-NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYM 555 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~d---------g~I~iwd~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i 555 (701)
.|++ ++..|++++.+ +.|.+|..- .....++. ....|++++|-..|-.++.+- |+.|++
T Consensus 265 kWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkv--pg~~It~lsWEg~gLriA~Av-dsfiyf 333 (1189)
T KOG2041|consen 265 KWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKV--PGSCITGLSWEGTGLRIAIAV-DSFIYF 333 (1189)
T ss_pred eecC-CCcEEEEccCcccccCccccceEEEeccchhheEEEec--CCceeeeeEEcCCceEEEEEe-cceEEE
Confidence 9999 78888888764 245555432 22222332 566788888876665555442 444443
No 266
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.95 E-value=1.7e-09 Score=124.73 Aligned_cols=216 Identities=18% Similarity=0.260 Sum_probs=151.4
Q ss_pred ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005352 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (701)
Q Consensus 210 ~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~ 289 (701)
++...+.++|+.||.|++|.+.....-. ..+ .+....|+.+.|+.+|.....+..||.+.+|.+..
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~----~~r--t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-------- 2282 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVV----CFR--TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-------- 2282 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEE----Eee--ccCcchhhhhhhcccCCceeeeccCCceeecccCC--------
Confidence 3455677889999999999886543221 111 12338899999999999999999999999999751
Q ss_pred CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEE
Q 005352 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL 369 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~ 369 (701)
++....+.|.....++.|-. ..++
T Consensus 2283 -------------------------------------------------------k~~~s~qchnk~~~Df~Fi~-s~~~ 2306 (2439)
T KOG1064|consen 2283 -------------------------------------------------------KPYTSWQCHNKALSDFRFIG-SLLA 2306 (2439)
T ss_pred -------------------------------------------------------cceeccccCCccccceeeee-hhhh
Confidence 45556677888888888876 3455
Q ss_pred EEE---CCCcEEEEECCCCe---eeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEE
Q 005352 370 SAS---IDKTVRLWRVGNDH---CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVC 443 (701)
Q Consensus 370 s~s---~dg~I~iWd~~~~~---~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~ 443 (701)
+++ .++.+.+||..-.. ++. ..|.+.++++++.| ...+|++|+.+|.|++||++..+....+..
T Consensus 2307 tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~-------- 2376 (2439)
T KOG1064|consen 2307 TAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------- 2376 (2439)
T ss_pred ccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh--------
Confidence 543 57899999964332 233 34999999999999 899999999999999999998877654432
Q ss_pred EeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC
Q 005352 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (701)
Q Consensus 444 ~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg 509 (701)
+. ...++++|+..|.++||++..-.+....+... . +. ..-...+.+..-+..+.|.+++.|+
T Consensus 2377 ~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~-a-k~-gfFr~~g~Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2377 LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH-A-KQ-GFFRNIGMQINVGQCNRIFSCGADG 2438 (2439)
T ss_pred hh-hhheeeccCcccceEEEEccccchhhcCchhh-c-cc-chhhhcCceeeeccCceEEEecCCC
Confidence 33 56689999999999999998765443322211 1 11 0112222333333356667776665
No 267
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.95 E-value=4.1e-09 Score=101.13 Aligned_cols=248 Identities=18% Similarity=0.244 Sum_probs=154.1
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
....|+++.|...|.||+||...|.|.+|.-.... -.++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~cey---------------------------------------- 63 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-GCEY---------------------------------------- 63 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeeccccc-ccch----------------------------------------
Confidence 34579999999999999999999999999754432 0001
Q ss_pred CccEEEcCCccccccCCCeEEEcCC------------ccCeEEEEEecCC---eEEEEECCCcEEEEECCCCeeeeeec-
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGH------------SGEILDLSWSKNN---YLLSASIDKTVRLWRVGNDHCLRVFP- 392 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~~~~~~~~- 392 (701)
+....|++| ...|..|.|..++ .++..+.|++|++|.+........-.
T Consensus 64 ----------------kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~n 127 (460)
T COG5170 64 ----------------KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAEN 127 (460)
T ss_pred ----------------hhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcc
Confidence 111222222 2457888888765 78888999999999987653321111
Q ss_pred ---------CCCCeEEEEEeeCCCCEEEE-EE-cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEE
Q 005352 393 ---------HSNYVTCVHFNPVDDNYFIS-GS-IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCR 461 (701)
Q Consensus 393 ---------h~~~V~~l~f~p~~~~~l~s-gs-~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~ 461 (701)
..+++++..- ++.- .+ .|..|.. ....+....|...|.++++..|.+.++++ .+-.|.
T Consensus 128 nls~~~~~~~~g~~~s~~~------l~lprls~hd~iiaa----~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrIN 196 (460)
T COG5170 128 NLSDSFHSPMGGPLTSTKE------LLLPRLSEHDEIIAA----KPCRVYANAHPYHINSISFNSDKETLLSA-DDLRIN 196 (460)
T ss_pred ccccccccccCCCcCCHHH------hhcccccccceEEEe----ccceeccccceeEeeeeeecCchheeeec-cceeee
Confidence 1222222110 0000 00 0111111 11122233577789999999988877765 467899
Q ss_pred EEECCCCeeeeeee-EEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc------ceeee----cc----
Q 005352 462 FYNVSDNHLELDAE-ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------IGKYK----GL---- 526 (701)
Q Consensus 462 i~d~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~------~~~~~----~~---- 526 (701)
+|++.-........ +.++ .......-|++..|+|.....++-++..|.|++-|++.. ...+. +.
T Consensus 197 LWnl~i~D~sFnIVDiKP~-nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~f 275 (460)
T COG5170 197 LWNLEIIDGSFNIVDIKPH-NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDF 275 (460)
T ss_pred eccccccCCceEEEeccCc-cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchh
Confidence 99987533221110 1111 011123457889999988899999999999999998721 11111 11
Q ss_pred --cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCc
Q 005352 527 --RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAH 566 (701)
Q Consensus 527 --~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~ 566 (701)
.-...|..+.|+++|+||++-+. -+|+|||++..+.+..
T Consensus 276 f~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik 316 (460)
T COG5170 276 FEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK 316 (460)
T ss_pred HHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence 12357889999999999998765 5799999998876543
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.91 E-value=1.3e-06 Score=104.26 Aligned_cols=205 Identities=12% Similarity=0.093 Sum_probs=135.8
Q ss_pred CeEEEEEecCC-eEEEE-ECCCcEEEEECCCCeeeeeecC------------------CCCeEEEEEeeCCCCEEEEEEc
Q 005352 356 EILDLSWSKNN-YLLSA-SIDKTVRLWRVGNDHCLRVFPH------------------SNYVTCVHFNPVDDNYFISGSI 415 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~-s~dg~I~iWd~~~~~~~~~~~h------------------~~~V~~l~f~p~~~~~l~sgs~ 415 (701)
....|++.+++ .|+.+ ..++.|+++|+.++... ++.. -.....++|+|.++.++++...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 35678888876 45444 45678999998776532 2210 1234689999855667777778
Q ss_pred CCcEEEEeCCCCcEEEEecC---------------CCcEEEEEEeeCCCeEE-EEecCCcEEEEECCCCeeeeeeeE---
Q 005352 416 DGKVRIWAVLSCHVVDWVDI---------------RQIVTAVCYRPDGQGGI-VGSMMGDCRFYNVSDNHLELDAEI--- 476 (701)
Q Consensus 416 dg~v~iwd~~~~~~~~~~~~---------------~~~i~~i~~sp~g~~l~-~gs~dg~v~i~d~~~~~~~~~~~~--- 476 (701)
++.|++||..++.+..+.+. -.....|+++|+++.|+ +-+.++.|++||+.++........
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 89999999988765433211 12356799999998555 455678999999987653211000
Q ss_pred ------Eeecc----cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcccee-eeccc------------CCCCeE
Q 005352 477 ------CVHSK----KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK-YKGLR------------RSGNQL 533 (701)
Q Consensus 477 ------~~~~~----~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~-~~~~~------------~~~~v~ 533 (701)
..... .........++++.+ ++.++++-..++.|++||..+.... +.+.+ ......
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 00000 001112346888988 6778888888999999998643322 11111 123567
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 534 SACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 534 ~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.++++++|+.+++-+.++.|++||+.+++
T Consensus 863 GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 863 GLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 89999999999998999999999998875
No 269
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=4.8e-09 Score=107.59 Aligned_cols=210 Identities=17% Similarity=0.261 Sum_probs=148.0
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCC-------Ceeeeeec-CCCCeEEEEEeeCCCCEEEEEEc
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN-------DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI 415 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~-------~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~ 415 (701)
-.++.|.||...|..++--.+. -+++++.|++|++|.++. ..|..++. |..+|..+.|.. +.++++++
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc-- 802 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC-- 802 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--
Confidence 4567889999999998755554 999999999999999863 24566665 999999999997 77777764
Q ss_pred CCcEEEEeCCCCcEEE---EecCCCcEEEEEEee--CCCeEEEE-ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCe
Q 005352 416 DGKVRIWAVLSCHVVD---WVDIRQIVTAVCYRP--DGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (701)
Q Consensus 416 dg~v~iwd~~~~~~~~---~~~~~~~i~~i~~sp--~g~~l~~g-s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i 489 (701)
||.|.+||.--++.+. +....+.+..+..-| +...++.| +...+|+++|.+......+.+.+.. ..+...+
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna---~~Pna~~ 879 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA---PGPNALT 879 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC---CCCchhe
Confidence 8899999987776542 222334444444444 34445554 6788999999998887666554422 2344567
Q ss_pred eEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEE-EeCCCCC
Q 005352 490 TGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYM-WNCIGHE 562 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i-Wd~~~~~ 562 (701)
.+++..+ .++.++++-.+|.|.+.|.++....-...........++ .|..+.|+....|.++.+ |..-++.
T Consensus 880 R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 880 RAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred eEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence 8888888 799999999999999999987654332222222222332 356677887778888888 8655543
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=3.9e-07 Score=94.29 Aligned_cols=319 Identities=15% Similarity=0.203 Sum_probs=181.8
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC-----------CCcEEE
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-----------DGVVRL 276 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-----------Dg~I~i 276 (701)
..++.+.++++-.. ..|.+|- ...+..+.. + .|.+ |.-+.|||+.+||+|-+. -..++|
T Consensus 217 ~wSP~GTYL~t~Hk-~GI~lWG----G~~f~r~~R---F-~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 217 RWSPKGTYLVTFHK-QGIALWG----GESFDRIQR---F-YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred EecCCceEEEEEec-cceeeec----CccHHHHHh---c-cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 34555666665443 3466773 122222211 1 2554 889999999999999764 157999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
||+.+|.....+.....+... .-.+.++-+....... ....+.++....+.+.++.-. .-..
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~----------WP~frWS~DdKy~Arm----~~~sisIyEtpsf~lld~Ksl----ki~g 348 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLK----------WPIFRWSHDDKYFARM----TGNSISIYETPSFMLLDKKSL----KISG 348 (698)
T ss_pred EEccccchhcceeccCCCccc----------cceEEeccCCceeEEe----ccceEEEEecCceeeeccccc----CCcc
Confidence 999999988877654221110 0011111111111111 112333333333333222111 2356
Q ss_pred eEEEEEecCC-eEEEEEC-----CCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEE----------cCCcE
Q 005352 357 ILDLSWSKNN-YLLSASI-----DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS----------IDGKV 419 (701)
Q Consensus 357 I~~l~~s~~~-~l~s~s~-----dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs----------~dg~v 419 (701)
|....|+|.+ .|+-=.. -..+.+-.+.+++.+++-. ++-.=..+.|-. ++.+|+.-- .-..+
T Consensus 349 Ir~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~ 427 (698)
T KOG2314|consen 349 IRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNL 427 (698)
T ss_pred ccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeE
Confidence 8888999987 4442221 1346666666666665544 211112234444 555555321 12246
Q ss_pred EEEeCCCCcE-EEEecCCCcEEEEEEeeCCCeEEEEec---CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 420 RIWAVLSCHV-VDWVDIRQIVTAVCYRPDGQGGIVGSM---MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 420 ~iwd~~~~~~-~~~~~~~~~i~~i~~sp~g~~l~~gs~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
-|+.++...+ +........|...+|-|.|+.+++-+. ..++.+|.+.++...... .+.......+.+.|+
T Consensus 428 eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l------Vk~~dk~~~N~vfws 501 (698)
T KOG2314|consen 428 EIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL------VKELDKKFANTVFWS 501 (698)
T ss_pred EEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh------hhhhcccccceEEEc
Confidence 6777776553 466778889999999999998877543 456889988753221111 111122456789999
Q ss_pred cCCCCEEEEEE---CCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeC------CCcEEEEeCCCCC
Q 005352 496 PQDSSKVMVSC---ADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE------DSNVYMWNCIGHE 562 (701)
Q Consensus 496 p~~~~~l~~~s---~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~------Dg~I~iWd~~~~~ 562 (701)
| .|++++++. ..|.+.++|......+..........+.+.|.|.|+|++|++. |.--+||++.+..
T Consensus 502 P-kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 502 P-KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred C-CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 9 677776654 4789999998742222233333345678899999999999975 4446777776543
No 271
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=7.6e-07 Score=96.36 Aligned_cols=173 Identities=14% Similarity=0.102 Sum_probs=103.3
Q ss_pred eEEEEEecCC-eEEEEE-CCC----cEEEEECCCC---eeeeeecC-CCCeEEEEEeeCCCCEEEEEE-cCCcEEEE--e
Q 005352 357 ILDLSWSKNN-YLLSAS-IDK----TVRLWRVGND---HCLRVFPH-SNYVTCVHFNPVDDNYFISGS-IDGKVRIW--A 423 (701)
Q Consensus 357 I~~l~~s~~~-~l~s~s-~dg----~I~iWd~~~~---~~~~~~~h-~~~V~~l~f~p~~~~~l~sgs-~dg~v~iw--d 423 (701)
....+|+|+| .|+..+ .+| .+.+|++..+ ........ .......+|+| +++.|+..+ .+|...+| +
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEE
Confidence 4467999999 665444 223 3455777653 33333332 23456789999 998877665 45655555 4
Q ss_pred CCC--CcEEEEecCCCcEEEEEEeeCCCeEEEEecC---CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC
Q 005352 424 VLS--CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (701)
Q Consensus 424 ~~~--~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~ 498 (701)
+.. +....+......+....|+|||+.|+..+.+ ..|.+||+.+++.... .. ....+....|+| +
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-----t~----~~~~~~~p~wSp-D 381 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-----TT----SPENKESPSWAI-D 381 (428)
T ss_pred CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-----cC----CCCCccceEECC-C
Confidence 432 2233333444567788999999988876543 4689999988765321 11 112456788999 5
Q ss_pred CCEEEEEEC---CCcEEEEeCCccceeeecccCCCCeEEEEEecCC
Q 005352 499 SSKVMVSCA---DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDG 541 (701)
Q Consensus 499 ~~~l~~~s~---dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg 541 (701)
++.|+.... ...|+++|+........ ....+.+...+|+|-.
T Consensus 382 G~~L~f~~~~~g~~~L~~vdl~~g~~~~L-t~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 382 SLHLVYSAGNSNESELYLISLITKKTRKI-VIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCcccCceecCCC
Confidence 666654433 35688888765432221 1234455667777643
No 272
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=4.3e-07 Score=98.26 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=125.2
Q ss_pred EcCCccCeEEEEEecCC-e--E-EEEECCC--cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEc-----CCc
Q 005352 350 FHGHSGEILDLSWSKNN-Y--L-LSASIDK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-----DGK 418 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~~-~--l-~s~s~dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~-----dg~ 418 (701)
+......+..-.|+|+| . + ++...++ .|.+.++..++........+.....+|+| |++.|+..+. +..
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSP-DG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSP-RKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECC-CCCEEEEEECCCCCccee
Confidence 33345566778999997 3 3 2444444 57777998887665555566667789999 9988876553 223
Q ss_pred EEEEeCCC---CcEEEEecCC-CcEEEEEEeeCCCeEEEEe-cCCcEEEEE--CCCCeeeeeeeEEeecccCCCCCCeeE
Q 005352 419 VRIWAVLS---CHVVDWVDIR-QIVTAVCYRPDGQGGIVGS-MMGDCRFYN--VSDNHLELDAEICVHSKKKAPCKRITG 491 (701)
Q Consensus 419 v~iwd~~~---~~~~~~~~~~-~~i~~i~~sp~g~~l~~gs-~dg~v~i~d--~~~~~~~~~~~~~~~~~~~~~~~~i~~ 491 (701)
+.+|++.. ++........ ......+|+|||+.|+..+ .+|...+|. +....... . .+ ......+..
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~-~--~l----t~~~~~~~~ 331 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP-R--LL----TKKYRNSSC 331 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce-E--Ee----ccCCCCccc
Confidence 45577765 2333333332 3456789999999887765 466555554 43211000 0 01 111234567
Q ss_pred EEEecCCCCEEEEEECC---CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeC---CCcEEEEeCCCCC
Q 005352 492 FQFLPQDSSKVMVSCAD---SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE---DSNVYMWNCIGHE 562 (701)
Q Consensus 492 l~~~p~~~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~---Dg~I~iWd~~~~~ 562 (701)
..|+| +++.|+..+.+ ..|.+||+......... .....+....|+|||++|+..+. ...|++|++.+++
T Consensus 332 p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 332 PAWSP-DGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred eeECC-CCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 89999 56766665542 46899998755433222 12345677899999998875433 3568889988765
No 273
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=1.7e-06 Score=83.40 Aligned_cols=188 Identities=15% Similarity=0.243 Sum_probs=119.0
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--------CCCCeEEEEEeeCC-----CCEEEEEEcCCcEEE
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--------HSNYVTCVHFNPVD-----DNYFISGSIDGKVRI 421 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--------h~~~V~~l~f~p~~-----~~~l~sgs~dg~v~i 421 (701)
.=..++|||++ .|+.+...|+|+++|+....+. .+. ....|..+.|.+.. ...|++-...|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 45678999999 8999999999999999764433 332 33567777776522 225666667888887
Q ss_pred EeCCCC-----cEEE---Ee-cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEE
Q 005352 422 WAVLSC-----HVVD---WV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (701)
Q Consensus 422 wd~~~~-----~~~~---~~-~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l 492 (701)
|-+..+ +... +. .....|+++.|+|..+.|++|+.... .++ ........+++.
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~------------~s~a~~~GLtaW 185 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG------------MSKASSCGLTAW 185 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc------------cccccccCceEE
Confidence 765322 1111 11 23678999999999999998876432 000 011223445555
Q ss_pred EEecCCCCEEEEEECCCcE-------EEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 493 QFLPQDSSKVMVSCADSQV-------RILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~dg~I-------~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.+..+.+.+..+...+..+ .+|.+.+.............|..|+.||||..||+...+|.|.+|++-+-.
T Consensus 186 RiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 186 RILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred EEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 5555444444444432222 233322211111112256789999999999999999999999999987755
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.84 E-value=3.1e-07 Score=96.15 Aligned_cols=183 Identities=14% Similarity=0.156 Sum_probs=146.2
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeec----CCCCeEEEEEee-------------------CCCCEEEEEEcCCcEEEEe
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNP-------------------VDDNYFISGSIDGKVRIWA 423 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p-------------------~~~~~l~sgs~dg~v~iwd 423 (701)
+++....||.+++|+...++....|. ..+..++..|.- .+...++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 89999999999999999998888775 345566666631 1345677888899999999
Q ss_pred CCCCcEEEEe---cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCC
Q 005352 424 VLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (701)
Q Consensus 424 ~~~~~~~~~~---~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~ 500 (701)
...+++...+ .|.+.|.++.++.+-..|.+++.|+.+..|+......... .......+.+++++| ++.
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~--------~~~~~~~~~sl~is~-D~~ 157 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI--------WKEQKPLVSSLCISP-DGK 157 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee--------eccCCCccceEEEcC-CCC
Confidence 9999887544 4788999999999999999999999999999987765432 223345688899999 588
Q ss_pred EEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecC-----CCEEEE-EeCCCcEEEEeCCC
Q 005352 501 KVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSD-----GKHIVS-AGEDSNVYMWNCIG 560 (701)
Q Consensus 501 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~d-----g~~l~s-gs~Dg~I~iWd~~~ 560 (701)
.+++++ ++|++||+.+........+|.++|.+++|..+ |.++++ +..+..|.+|-+..
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 887776 58999999987777777779999999999887 666655 45667788998765
No 275
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.80 E-value=6.9e-06 Score=86.64 Aligned_cols=270 Identities=16% Similarity=0.207 Sum_probs=156.8
Q ss_pred eecCcccccccc----ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEeecCe
Q 005352 209 VRLNEEDAMFCS----KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDE 283 (701)
Q Consensus 209 ~~~~~~~~~~~~----~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~~~ 283 (701)
+++++..+.+.. ..+.|..|.+......+..+ ............++++|++++|+++.. +|.|.++++....
T Consensus 44 ~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~---~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 44 VSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL---NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG 120 (345)
T ss_dssp E-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE---EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred EEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe---eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc
Confidence 344455444433 46788888876543222222 222223445668999999999999875 8999999998743
Q ss_pred eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe
Q 005352 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (701)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 363 (701)
.+..... .+....... .+ -........++.++
T Consensus 121 ~l~~~~~-----------------------------~~~~~g~g~----------------~~---~rq~~~h~H~v~~~ 152 (345)
T PF10282_consen 121 SLGEVVQ-----------------------------TVRHEGSGP----------------NP---DRQEGPHPHQVVFS 152 (345)
T ss_dssp EEEEEEE-----------------------------EEESEEEES----------------ST---TTTSSTCEEEEEE-
T ss_pred ccceeee-----------------------------ecccCCCCC----------------cc---cccccccceeEEEC
Confidence 2221100 000000000 00 00122446789999
Q ss_pred cCC-eEEEEE-CCCcEEEEECCCCe--eee----eecCCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCC--CCcEE--
Q 005352 364 KNN-YLLSAS-IDKTVRLWRVGNDH--CLR----VFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVL--SCHVV-- 430 (701)
Q Consensus 364 ~~~-~l~s~s-~dg~I~iWd~~~~~--~~~----~~~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~--~~~~~-- 430 (701)
|++ ++++.. ....|.+|++.... ... .+......+.+.|+| ++++++... .++.|.++++. ++...
T Consensus 153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence 998 565544 34579999997665 322 223566789999999 887776554 57889999988 44322
Q ss_pred EEec-------CCCcEEEEEEeeCCCeEEEEec-CCcEEEEECCC--CeeeeeeeEEeecccCCCCCCeeEEEEecCCCC
Q 005352 431 DWVD-------IRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (701)
Q Consensus 431 ~~~~-------~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~ 500 (701)
.... .......|.++|+|++|+++.. .+.|.+|++.. +.+.....+.. .......+.++| +++
T Consensus 232 ~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~------~G~~Pr~~~~s~-~g~ 304 (345)
T PF10282_consen 232 QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT------GGKFPRHFAFSP-DGR 304 (345)
T ss_dssp EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE------SSSSEEEEEE-T-TSS
T ss_pred EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC------CCCCccEEEEeC-CCC
Confidence 1111 1125889999999999888764 67799999943 44433222222 123478899999 677
Q ss_pred EEEEEE-CCCcEEEEeCC--ccceeeecc-cCCCCeEEEEE
Q 005352 501 KVMVSC-ADSQVRILQGP--NVIGKYKGL-RRSGNQLSACF 537 (701)
Q Consensus 501 ~l~~~s-~dg~I~iwd~~--~~~~~~~~~-~~~~~v~~l~~ 537 (701)
+|+++. .++.|.+|++. +........ .......|+.|
T Consensus 305 ~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 305 YLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 777766 57789998764 333222221 13344555554
No 276
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.78 E-value=5.5e-08 Score=103.46 Aligned_cols=286 Identities=15% Similarity=0.215 Sum_probs=171.1
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeee--cCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEV--DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
.+++.++..+|.|+-+|.++.-| +.+-|+...-....+ .+......-..+.+......-.+..+..+.. ++.+...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkai-iwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhh-hhhhhcC
Confidence 45788899999999999999877 445566543211111 1111112222333333333333333332222 2222222
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCe-eeeeec-CCCCeEEEEEe
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDH-CLRVFP-HSNYVTCVHFN 403 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~-~~~~~~-h~~~V~~l~f~ 403 (701)
++. ..-..+.||...|+++.|+++. .+++++.|-.|..||+++.. ++..+. -......++|+
T Consensus 102 s~~--------------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn 167 (1081)
T KOG0309|consen 102 SSN--------------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN 167 (1081)
T ss_pred Ccc--------------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence 221 2234578999999999999988 99999999999999998864 333333 34556789999
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCCCcEE--EEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 404 PVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 404 p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
-.+++.+++. ..+.|++||++.+... ....+-..|+.+.|.. .-..+.+.+.||+|++||........+.
T Consensus 168 yk~p~vlass-hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~------ 240 (1081)
T KOG0309|consen 168 YKDPNVLASS-HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR------ 240 (1081)
T ss_pred ccCcchhhhc-cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce------
Confidence 8677766654 4667999999977533 4445666777777765 2346788899999999998764322111
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEE-EECCCcEEEEe------------CCccceeeecccCCCCeEEEEEecCC------
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMV-SCADSQVRILQ------------GPNVIGKYKGLRRSGNQLSACFTSDG------ 541 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~-~s~dg~I~iwd------------~~~~~~~~~~~~~~~~v~~l~~s~dg------ 541 (701)
......+|..-.+.|....+.+. .-.+..+.+++ ..+....|.+ |...|...-|-..+
T Consensus 241 -~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G--H~D~V~eFlWR~r~e~~~d~ 317 (1081)
T KOG0309|consen 241 -TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG--HDDVVLEFLWRKRKECDGDY 317 (1081)
T ss_pred -eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC--cchHHHHHhhhhcccccCCC
Confidence 11222344444455532222221 11222333332 2334444444 77777665553322
Q ss_pred ----CEEEEEeCCCcEEEEeCCCC
Q 005352 542 ----KHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 542 ----~~l~sgs~Dg~I~iWd~~~~ 561 (701)
-.|+|-+.|..+++|-+.+.
T Consensus 318 d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 318 DSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred CccceeEEEeecCCceEeeeccHH
Confidence 37999999999999988754
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.77 E-value=2e-06 Score=87.59 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=87.3
Q ss_pred EEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCC----cEEE
Q 005352 348 HEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDG----KVRI 421 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg----~v~i 421 (701)
..+.+.-+.|.+++.+++| +++.+.....|.+.|+.+++....-+ ..+-|+.+.|+| +..+||-+--+| .|++
T Consensus 395 kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 395 KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEE
Confidence 4445566789999999999 78888888899999999997654433 567899999999 999999877665 5899
Q ss_pred EeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEe
Q 005352 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS 455 (701)
Q Consensus 422 wd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs 455 (701)
+|+.+++..........=.+-+|.|++++|.--+
T Consensus 474 ydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 474 YDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 9999999888777666667788999999877654
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2e-06 Score=89.25 Aligned_cols=230 Identities=14% Similarity=0.222 Sum_probs=142.7
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccE
Q 005352 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (701)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (701)
=+-+.|||-|.||+|-..-| |.+|-=.+-.+++.+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-------------------------------------------- 247 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-------------------------------------------- 247 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--------------------------------------------
Confidence 46789999999999999877 789964333222111
Q ss_pred EEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC-----------CCcEEEEECCCCeeeeeecC---CCCe
Q 005352 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-----------DKTVRLWRVGNDHCLRVFPH---SNYV 397 (701)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~-----------dg~I~iWd~~~~~~~~~~~h---~~~V 397 (701)
.| ..|.-+.|||+. ||+|=+. ...++|||+.+|...+.|.. ...+
T Consensus 248 -------------------~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~ 307 (698)
T KOG2314|consen 248 -------------------YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLK 307 (698)
T ss_pred -------------------cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccc
Confidence 13 357788999988 8887653 25799999999999888863 1222
Q ss_pred -EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec-CCCcEEEEEEeeCCCeEEEEec-----CCcEEEEECCCCee
Q 005352 398 -TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSM-----MGDCRFYNVSDNHL 470 (701)
Q Consensus 398 -~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~gs~-----dg~v~i~d~~~~~~ 470 (701)
.-+.|+. +++++|.-.. ..|.||+..+-.++.... .-..|....|+|.++.||-=+. -..+.+..+...+.
T Consensus 308 WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~ 385 (698)
T KOG2314|consen 308 WPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE 385 (698)
T ss_pred cceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce
Confidence 2467888 8999988775 569999988755543322 2356888999998777664322 12244444444332
Q ss_pred eeeeeEEeecccCCCCCCeeE--EEEecCCCCEEEEEE----------CCCcEEEEeCCccceeeecccCCCCeEEEEEe
Q 005352 471 ELDAEICVHSKKKAPCKRITG--FQFLPQDSSKVMVSC----------ADSQVRILQGPNVIGKYKGLRRSGNQLSACFT 538 (701)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~i~~--l~~~p~~~~~l~~~s----------~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s 538 (701)
+....+ ..|.. +.|-. ++.+|++-- .-..+-|+.++...-..........|...+|-
T Consensus 386 iRt~nl----------fnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWE 454 (698)
T KOG2314|consen 386 IRTKNL----------FNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWE 454 (698)
T ss_pred eeeccc----------eeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeec
Confidence 211111 11222 23333 455554421 12235555555433333333356789999999
Q ss_pred cCCCEEEEEeC---CCcEEEEeCCC
Q 005352 539 SDGKHIVSAGE---DSNVYMWNCIG 560 (701)
Q Consensus 539 ~dg~~l~sgs~---Dg~I~iWd~~~ 560 (701)
|.|..+++-+. ..++.+|.+++
T Consensus 455 P~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 455 PHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred cCCCeEEEEEccccccceeEEEeec
Confidence 99987776543 25678887774
No 279
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.76 E-value=1.5e-07 Score=88.68 Aligned_cols=196 Identities=14% Similarity=0.198 Sum_probs=118.5
Q ss_pred eEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEe---------eCCCCEEEEEEcCCcEEEEeC
Q 005352 357 ILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFN---------PVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 357 I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~---------p~~~~~l~sgs~dg~v~iwd~ 424 (701)
|+.+.++.+..|+++..++.+......++.+..... ..++..+++.+ ...++-+++++.||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 555555555577777777666665554443333222 11122222211 124677999999999999998
Q ss_pred CCCcEE-EEe-cCCCcEEEEEEeeCCCeEEEEec-----CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 425 LSCHVV-DWV-DIRQIVTAVCYRPDGQGGIVGSM-----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 425 ~~~~~~-~~~-~~~~~i~~i~~sp~g~~l~~gs~-----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
+.-..+ ..+ .......+.++...++.+.++.. -+..+.|+++..+... ........+++++-+|.
T Consensus 119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~--------~~~~~~~~v~~l~~hp~ 190 (319)
T KOG4714|consen 119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI--------PSKKALDAVTALCSHPA 190 (319)
T ss_pred hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc--------ccccccccchhhhCCcc
Confidence 762211 111 11111223344444555444321 2334555554332211 11112234899999998
Q ss_pred CCCEEEEEECCCcEEEEeCCccceeee-cccCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCC
Q 005352 498 DSSKVMVSCADSQVRILQGPNVIGKYK-GLRRSGNQLSACFTS-DGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~s~-dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
..+.+++|+.||.+-+||.++...... ...|...+..+-|+| ++..|+++++||.+..||-.+
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 788899999999999999987633322 234889999999999 568999999999999999665
No 280
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=9.1e-07 Score=95.01 Aligned_cols=283 Identities=13% Similarity=0.159 Sum_probs=185.5
Q ss_pred ceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC------------CCEEEEEeCCCc
Q 005352 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD------------GQYLASAGDDGV 273 (701)
Q Consensus 206 ~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------------g~~Lasgs~Dg~ 273 (701)
.+++..+++.+++-+....|.|-|.. .....|.+.-|+..|+.+.|.|- .-+||++...|.
T Consensus 18 ~~A~Dw~~~GLiAygshslV~VVDs~-------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSHSLVSVVDSR-------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccCccceEEEecCceEEEEehh-------hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 45677788888887777788888643 33344677889999999999873 125788888999
Q ss_pred EEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCC
Q 005352 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (701)
Q Consensus 274 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 353 (701)
|.+||+..... +..+..|
T Consensus 91 Iil~d~~~~s~--------------------------------------------------------------~~~l~~~ 108 (1062)
T KOG1912|consen 91 IILVDFVLASV--------------------------------------------------------------INWLSHS 108 (1062)
T ss_pred EEEEEehhhhh--------------------------------------------------------------hhhhcCC
Confidence 99999876532 2334567
Q ss_pred ccCeEEEEEecCC-----eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-
Q 005352 354 SGEILDLSWSKNN-----YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS- 426 (701)
Q Consensus 354 ~~~I~~l~~s~~~-----~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~- 426 (701)
.++|.+++|-+.. .|++-....+|.+|+..+|+.+..+. ......|+.+.|.+.+.|..-+..|.+.+-+.-.
T Consensus 109 ~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~ 188 (1062)
T KOG1912|consen 109 NDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGL 188 (1062)
T ss_pred CcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCC
Confidence 7888999987642 66677778899999999999988877 4456677999998888888888888887776522
Q ss_pred ------CcEEEEe-cCCC-----------------c--------EEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeee
Q 005352 427 ------CHVVDWV-DIRQ-----------------I--------VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 427 ------~~~~~~~-~~~~-----------------~--------i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~ 474 (701)
++..++. .|.+ + ...++|+|.-+.++.......+.++|++-.......
T Consensus 189 sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vv 268 (1062)
T KOG1912|consen 189 SEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVV 268 (1062)
T ss_pred CCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEE
Confidence 1222211 1111 0 123567887666666667788999998765543322
Q ss_pred eEEeecccCCCCCCeeEEEEecC-CCCEEEEEECCCcEEEEeCCccceeeeccc------CCCCe-----------EEEE
Q 005352 475 EICVHSKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQGPNVIGKYKGLR------RSGNQ-----------LSAC 536 (701)
Q Consensus 475 ~~~~~~~~~~~~~~i~~l~~~p~-~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~------~~~~v-----------~~l~ 536 (701)
.+. .+.+.-+.+.|+ ....|++...||.+.||--+.....++... ....+ ....
T Consensus 269 pie--------r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~ 340 (1062)
T KOG1912|consen 269 PIE--------RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGA 340 (1062)
T ss_pred Eec--------cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceee
Confidence 211 133445666663 456788999999999997664333333210 01111 1122
Q ss_pred EecC-CCEEEEEeCCCcEEEEeCCCCCCCC
Q 005352 537 FTSD-GKHIVSAGEDSNVYMWNCIGHEEPA 565 (701)
Q Consensus 537 ~s~d-g~~l~sgs~Dg~I~iWd~~~~~~~~ 565 (701)
..|. ...++.--.+|.+.+|.+.++....
T Consensus 341 ~cPs~~sa~avl~s~g~~~~w~l~~~ri~~ 370 (1062)
T KOG1912|consen 341 SCPSTPSALAVLYSSGDSTFWQLSNGRIHL 370 (1062)
T ss_pred cCCCChhhhhhhhhcchhHHHhhhcCCcCc
Confidence 2233 2334444457889999999776533
No 281
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.71 E-value=2.9e-05 Score=77.83 Aligned_cols=184 Identities=14% Similarity=0.127 Sum_probs=119.4
Q ss_pred eEEEEEe-cCCeEEEEECCCcEEEEECCCCeeeeeec------CCCCeEEEEEeeCCCCEEEEEEcC--------CcEEE
Q 005352 357 ILDLSWS-KNNYLLSASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFISGSID--------GKVRI 421 (701)
Q Consensus 357 I~~l~~s-~~~~l~s~s~dg~I~iWd~~~~~~~~~~~------h~~~V~~l~f~p~~~~~l~sgs~d--------g~v~i 421 (701)
...+++. +++.|+.+...+ +.++|..+++...... .....+.+++.| ++++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 5667777 667777777655 4555999886554443 235688999999 89877776543 55777
Q ss_pred EeCCCCcEEEEecCCCcEEEEEEeeCCCeEE-EEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCC
Q 005352 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI-VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (701)
Q Consensus 422 wd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~-~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~ 500 (701)
++.. ++.......-...+.|+|+|+++.|+ +-+..+.|..|++............... .........++++.. +++
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~g~pDG~~vD~-~G~ 196 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID-FPGGPGYPDGLAVDS-DGN 196 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE--SSSSCEEEEEEEBT-TS-
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE-cCCCCcCCCcceEcC-CCC
Confidence 7877 66555555566789999999999776 4567888999998643321111111111 111113478899988 678
Q ss_pred EEEEEECCCcEEEEeCCcc-ceeeecccCCCCeEEEEEe-cCCCEEEEE
Q 005352 501 KVMVSCADSQVRILQGPNV-IGKYKGLRRSGNQLSACFT-SDGKHIVSA 547 (701)
Q Consensus 501 ~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~s-~dg~~l~sg 547 (701)
+.++....+.|.+++.... ...+.. ....+++++|. ++.+.|+..
T Consensus 197 l~va~~~~~~I~~~~p~G~~~~~i~~--p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPDGKLLREIEL--PVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEEE---SSSSEEEEEEESTTSSEEEEE
T ss_pred EEEEEcCCCEEEEECCCccEEEEEcC--CCCCEEEEEEECCCCCEEEEE
Confidence 8888888999999998732 222333 34589999994 665555443
No 282
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=1.8e-05 Score=78.76 Aligned_cols=203 Identities=15% Similarity=0.244 Sum_probs=140.6
Q ss_pred CCccCeEEEEEecCC-eEEEEEC---CCcEEEEECCC--Ceeeee--ec-CCCCeEEEEEeeCCCCEEEEEEc-CCcEEE
Q 005352 352 GHSGEILDLSWSKNN-YLLSASI---DKTVRLWRVGN--DHCLRV--FP-HSNYVTCVHFNPVDDNYFISGSI-DGKVRI 421 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-~l~s~s~---dg~I~iWd~~~--~~~~~~--~~-h~~~V~~l~f~p~~~~~l~sgs~-dg~v~i 421 (701)
.+....+-|+|+|++ +|+++.. +|.|..|.+.. |..... .. ...+...+++++ ++++++++.. -|.|.+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEE
Confidence 355678899999998 7777755 47788777764 443222 22 233448899999 8888887765 578999
Q ss_pred EeCCC-Cc---EEEEecCCCc----------EEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeeeEEeecccCCCC
Q 005352 422 WAVLS-CH---VVDWVDIRQI----------VTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPC 486 (701)
Q Consensus 422 wd~~~-~~---~~~~~~~~~~----------i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 486 (701)
+-++. +. .+....|.+. +....+.|++++|++... ..+|.+|++..+++....+..+ ...
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-----~~G 190 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-----KPG 190 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-----CCC
Confidence 98865 33 3344555554 888999999999988764 4569999999887654333322 344
Q ss_pred CCeeEEEEecCCCCEEEEEEC-CCcEEEEeCCccceeeec----------ccCCCCeEEEEEecCCCEEEEEeC-CCcEE
Q 005352 487 KRITGFQFLPQDSSKVMVSCA-DSQVRILQGPNVIGKYKG----------LRRSGNQLSACFTSDGKHIVSAGE-DSNVY 554 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~s~-dg~I~iwd~~~~~~~~~~----------~~~~~~v~~l~~s~dg~~l~sgs~-Dg~I~ 554 (701)
..-..|.|+| ++++..+... +++|-+|........+.. .........+.+++||++|.++.. ...|-
T Consensus 191 ~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 191 AGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred CCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 5667899999 6777666665 999999987653322221 123456678889999999988742 33677
Q ss_pred EEeCCCC
Q 005352 555 MWNCIGH 561 (701)
Q Consensus 555 iWd~~~~ 561 (701)
++.+...
T Consensus 270 ~f~V~~~ 276 (346)
T COG2706 270 VFSVDPD 276 (346)
T ss_pred EEEEcCC
Confidence 7777654
No 283
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.69 E-value=1.2e-05 Score=83.20 Aligned_cols=231 Identities=8% Similarity=0.027 Sum_probs=133.3
Q ss_pred ccceEEEEEccCccchhhhcccCc-eeccCCCcEEEEEEccCCCEEEEEeC--CCcEEEEEeecCeeeeeecCCCCCCce
Q 005352 221 KVQRVKVYHCKKRSKELSALYKGQ-EIQAHDGSILTMKFSPDGQYLASAGD--DGVVRLWQVVEDERLTEVDIPEIDPSC 297 (701)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~-~l~~H~~~I~~l~fspdg~~Lasgs~--Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 297 (701)
.+..|.|||.........-..... +.+ .......++++|||++|+.... +..|.+.|+.+++.+.++..+. |
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~----~ 149 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFL-VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD----C 149 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhh-ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC----C
Confidence 578999999764332110000000 000 1223447899999999987763 6899999999999999887643 2
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec-CC-eEEEEECCC
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDK 375 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~-~l~s~s~dg 375 (701)
.............++.+..... ..+..... ...-...+|+....++ ...+ .+.+ ++ +++.... |
T Consensus 150 ~~vy~t~e~~~~~~~~Dg~~~~--v~~d~~g~--~~~~~~~vf~~~~~~v-----~~rP----~~~~~dg~~~~vs~e-G 215 (352)
T TIGR02658 150 YHIFPTANDTFFMHCRDGSLAK--VGYGTKGN--PKIKPTEVFHPEDEYL-----INHP----AYSNKSGRLVWPTYT-G 215 (352)
T ss_pred cEEEEecCCccEEEeecCceEE--EEecCCCc--eEEeeeeeecCCcccc-----ccCC----ceEcCCCcEEEEecC-C
Confidence 2222221111111111111111 00110000 0000000110000000 0111 3455 66 5555444 9
Q ss_pred cEEEEECCCC-----eeeeeec--------CCCCeEEEEEeeCCCCEEEEEE----------cCCcEEEEeCCCCcEEEE
Q 005352 376 TVRLWRVGND-----HCLRVFP--------HSNYVTCVHFNPVDDNYFISGS----------IDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 376 ~I~iWd~~~~-----~~~~~~~--------h~~~V~~l~f~p~~~~~l~sgs----------~dg~v~iwd~~~~~~~~~ 432 (701)
+|.+-|+... +.+..+. ..+.+.-++++| +++.++... ..+.|.++|..+++.+..
T Consensus 216 ~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~ 294 (352)
T TIGR02658 216 KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK 294 (352)
T ss_pred eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEE
Confidence 9999996443 3333332 334455699999 777777632 124799999999999988
Q ss_pred ecCCCcEEEEEEeeCCC-eEEEEe-cCCcEEEEECCCCeee
Q 005352 433 VDIRQIVTAVCYRPDGQ-GGIVGS-MMGDCRFYNVSDNHLE 471 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~-~l~~gs-~dg~v~i~d~~~~~~~ 471 (701)
+.....+..++++||++ .|++.. .++.|.++|..+.+..
T Consensus 295 i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 295 IELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred EeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 88888999999999999 888776 5788999999887654
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.65 E-value=1.1e-05 Score=96.44 Aligned_cols=259 Identities=14% Similarity=0.103 Sum_probs=158.4
Q ss_pred EEEEEecC-C-eEEEEECCCcEEEEECCCCeeeeeecC---------------CCCeEEEEEeeCCCCEEEEE-EcCCcE
Q 005352 358 LDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVFPH---------------SNYVTCVHFNPVDDNYFISG-SIDGKV 419 (701)
Q Consensus 358 ~~l~~s~~-~-~l~s~s~dg~I~iWd~~~~~~~~~~~h---------------~~~V~~l~f~p~~~~~l~sg-s~dg~v 419 (701)
..+++++. + .+++-+.++.|++||.... .+..+.. -.....+++++ +++.|+.+ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 46788764 4 6667777889999998644 3433321 12368899998 67755554 445779
Q ss_pred EEEeCCCCcEEEEecC-----------------CCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeE----E
Q 005352 420 RIWAVLSCHVVDWVDI-----------------RQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEI----C 477 (701)
Q Consensus 420 ~iwd~~~~~~~~~~~~-----------------~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~----~ 477 (701)
+++|+.++.+..+.+. -.....++++| ++..+++.+.++.|++||..++........ .
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 9999988765443221 12346799999 555666667789999999987654311000 0
Q ss_pred eec--ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec------------c---------cCCCCeEE
Q 005352 478 VHS--KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG------------L---------RRSGNQLS 534 (701)
Q Consensus 478 ~~~--~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~------------~---------~~~~~v~~ 534 (701)
... ..........+++++|++..++++-+.++.|++||..+....... . ........
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 000 001122456789999954446667777899999998643221100 0 01123468
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccc
Q 005352 535 ACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLA 614 (701)
Q Consensus 535 l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 614 (701)
++++++|+++++-+.++.|++||..++.... + .-.|.. +.. .+. ........+..++
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~t---------i-----------aG~G~~-G~~-dG~-~~~a~l~~P~GIa 865 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTT---------L-----------AGTGKA-GFK-DGK-ALKAQLSEPAGLA 865 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEE---------E-----------eccCCc-CCC-CCc-ccccccCCceEEE
Confidence 9999999988998999999999988765210 0 000000 000 000 0001112355667
Q ss_pred cCCCccccCccccccCCCCcccCCCCccCCC
Q 005352 615 FAPARFSLGQEYVFESFPKGCATWPEEKLPA 645 (701)
Q Consensus 615 ~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~ 645 (701)
++|+ ++.+++.+.+..|++|+.++...
T Consensus 866 vd~d----G~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 866 LGEN----GRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EeCC----CCEEEEECCCCEEEEEECCCCcc
Confidence 7776 66788888999999999876643
No 285
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.63 E-value=2.3e-05 Score=83.94 Aligned_cols=180 Identities=13% Similarity=0.082 Sum_probs=115.2
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEE------EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTC------VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~------l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 438 (701)
++.++.++.++.|..||..+++.+..+........ ... .+..++.+..++.+..+|..+++.+-......+
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~ 221 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALP 221 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccC
Confidence 34677777899999999999998887764332211 112 224677888889999999999876532211100
Q ss_pred --------EEEEEEee--CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 439 --------VTAVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 439 --------i~~i~~sp--~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
...+.-+| .+..+++++.+|.+..||..+++....... ........ .+..+++++.+
T Consensus 222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~----------~~~~~p~~---~~~~vyv~~~~ 288 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA----------SSYQGPAV---DDNRLYVTDAD 288 (377)
T ss_pred CCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc----------CCccCceE---eCCEEEEECCC
Confidence 00011111 356788888999999999998876543221 01111222 35678888899
Q ss_pred CcEEEEeCCccceeeeccc-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 509 SQVRILQGPNVIGKYKGLR-RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|.|+.+|..+......... ......+... .+.+|++++.+|.|+++|..+++
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 9999999876655443311 1111222222 46789999999999999988887
No 286
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.63 E-value=3.7e-07 Score=87.97 Aligned_cols=242 Identities=17% Similarity=0.249 Sum_probs=141.1
Q ss_pred cceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCC------------cEEEEEEccCCC--EEEEE
Q 005352 205 EGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDG------------SILTMKFSPDGQ--YLASA 268 (701)
Q Consensus 205 ~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~------------~I~~l~fspdg~--~Lasg 268 (701)
.+.++.++ +.++++|...|+|.+|.-.+...--.. -..++|+|.. .|..+.|..++. .++..
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceyk--f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYK--FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchh--hhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 34555555 456777777799999975443210011 1124566653 588899977643 46666
Q ss_pred eCCCcEEEEEeecCee--eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCC
Q 005352 269 GDDGVVRLWQVVEDER--LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346 (701)
Q Consensus 269 s~Dg~I~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (701)
+.|.+|++|.+..... +.+-.+.+. ..+...+ .+. ....+...+-+....++.. +|
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~----~~~~~~g--~~~-------s~~~l~lprls~hd~iiaa---------~p 163 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDS----FHSPMGG--PLT-------STKELLLPRLSEHDEIIAA---------KP 163 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccc----cccccCC--CcC-------CHHHhhcccccccceEEEe---------cc
Confidence 7899999999876421 111111000 0000000 000 0000000011111111111 33
Q ss_pred eEEE-cCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCe-eeee--e-cC-----CCCeEEEEEeeCCCCEEEEEEcC
Q 005352 347 LHEF-HGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH-CLRV--F-PH-----SNYVTCVHFNPVDDNYFISGSID 416 (701)
Q Consensus 347 ~~~~-~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~-~~~~--~-~h-----~~~V~~l~f~p~~~~~l~sgs~d 416 (701)
.+.+ ..|.-.|.+|.+..+...+.++.|=.|.+|++.--. +... + +| ..-|++..|+|...+.|.-.+..
T Consensus 164 ~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk 243 (460)
T COG5170 164 CRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK 243 (460)
T ss_pred ceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence 3333 578889999999988855555667889999986432 1111 1 22 24588999999777888888889
Q ss_pred CcEEEEeCCCCcEEE-----------------EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee
Q 005352 417 GKVRIWAVLSCHVVD-----------------WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 417 g~v~iwd~~~~~~~~-----------------~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
|.|++-|++...+.. +...-..|..+.|+++|+++++-.. -+|++||++..+..
T Consensus 244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence 999999998533210 0112245888999999999988765 68999999876543
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.61 E-value=3.9e-07 Score=85.92 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=72.4
Q ss_pred CcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--EEecCCCcEEEEEEee-CCCe
Q 005352 375 KTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDIRQIVTAVCYRP-DGQG 450 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~~~~~i~~i~~sp-~g~~ 450 (701)
+..++|+++..+.+..-. .-..|++++-+|...+++++|+.||.+.+||.+..... .+..|+.+++.+-|+| ++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 345667665443332222 33459999999977788899999999999999987543 3456889999999999 6789
Q ss_pred EEEEecCCcEEEEECCC
Q 005352 451 GIVGSMMGDCRFYNVSD 467 (701)
Q Consensus 451 l~~gs~dg~v~i~d~~~ 467 (701)
|++++.||.+..||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999876
No 288
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=4.6e-06 Score=89.77 Aligned_cols=243 Identities=11% Similarity=0.085 Sum_probs=160.5
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccE
Q 005352 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (701)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (701)
-.++.|+|.| ++|-|+. ..|.+-|..+-+.+
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~i----------------------------------------------- 48 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLI----------------------------------------------- 48 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhh-----------------------------------------------
Confidence 5678999988 6676665 57888887765543
Q ss_pred EEcCCccccccCCCeEEEcCCccCeEEEEEecC-----------C--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeE
Q 005352 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN-----------N--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVT 398 (701)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-----------~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~ 398 (701)
+.+.-|...|+.+.|.|- . .|+++...|.|.+||...+..+..+. +.+++.
T Consensus 49 ---------------qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~q 113 (1062)
T KOG1912|consen 49 ---------------QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQ 113 (1062)
T ss_pred ---------------hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchh
Confidence 344456677777777651 1 57777888999999999988887777 678899
Q ss_pred EEEEeeCC--C-CEEEEEEcCCcEEEEeCCCCcEEEEec-CCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCee---
Q 005352 399 CVHFNPVD--D-NYFISGSIDGKVRIWAVLSCHVVDWVD-IRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHL--- 470 (701)
Q Consensus 399 ~l~f~p~~--~-~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~--- 470 (701)
.++|-|.. . .+|++-....+|.+|+..+|+..-... ......++.+.| |.+.+.+-+..|.+.+-+.-....
T Consensus 114 dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~ 193 (1062)
T KOG1912|consen 114 DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV 193 (1062)
T ss_pred heeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC
Confidence 99998732 2 467777778899999999998774433 445566789998 667777777778877776542211
Q ss_pred -eeeeeEEeeccc-----------------CCCCC---CeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCC
Q 005352 471 -ELDAEICVHSKK-----------------KAPCK---RITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRS 529 (701)
Q Consensus 471 -~~~~~~~~~~~~-----------------~~~~~---~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 529 (701)
..+.++...... ..... ....++|+| .-+.++.......+.++|+.-........-..
T Consensus 194 pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p-~~rn~lfi~~prellv~dle~~~~l~vvpier 272 (1062)
T KOG1912|consen 194 PGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP-HWRNILFITFPRELLVFDLEYECCLAVVPIER 272 (1062)
T ss_pred CceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh-hhhceEEEEeccceEEEcchhhceeEEEEecc
Confidence 111111111000 00000 112356788 44555666677889999987443333332244
Q ss_pred CCeEEEEEecCC--CEEEEEeCCCcEEEEeCCC
Q 005352 530 GNQLSACFTSDG--KHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 530 ~~v~~l~~s~dg--~~l~sgs~Dg~I~iWd~~~ 560 (701)
+.+.-+.+-|++ ..|++...||.+.||--+.
T Consensus 273 ~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 273 GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred CCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 445556666654 6899999999999997654
No 289
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.61 E-value=0.00012 Score=86.12 Aligned_cols=297 Identities=18% Similarity=0.232 Sum_probs=174.5
Q ss_pred CCCcEEEEEEccCCCEEEEEeC---C---CcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 249 HDGSILTMKFSPDGQYLASAGD---D---GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~---D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+...-..|+|-.||.|+|+.+. . ..||||+-+ |.....-.... ..-..+.|.+.+..+..
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~-------------gLe~~l~WrPsG~lIA~ 273 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD-------------GLEGALSWRPSGNLIAS 273 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC-------------CccCCccCCCCCCEEEE
Confidence 4445678999999999998765 2 578999864 43222111100 11224455555555555
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeee--e--eecCCCCe
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCL--R--VFPHSNYV 397 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~--~--~~~h~~~V 397 (701)
..+......++.|...-.+-.+ ....+......|..|.|++++ .|+..-.|. |.+|-..+-... + .+.....+
T Consensus 274 ~q~~~~~~~VvFfErNGLrhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~ 351 (928)
T PF04762_consen 274 SQRLPDRHDVVFFERNGLRHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESV 351 (928)
T ss_pred EEEcCCCcEEEEEecCCcEeee-EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCC
Confidence 5544444444444443322211 111112345679999999999 666655544 999998776422 2 22344556
Q ss_pred EEEEEeeCCCCEEEEEEcCCcEEEEeC----CC----------------CcEE----------------EEecCCCcEEE
Q 005352 398 TCVHFNPVDDNYFISGSIDGKVRIWAV----LS----------------CHVV----------------DWVDIRQIVTA 441 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~dg~v~iwd~----~~----------------~~~~----------------~~~~~~~~i~~ 441 (701)
..+.|+|.+...|...+.+|.+..++. .. |..+ ..+....+|..
T Consensus 352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~ 431 (928)
T PF04762_consen 352 NFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVND 431 (928)
T ss_pred CceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEE
Confidence 669999977888888887777766543 11 1111 12234567999
Q ss_pred EEEeeCCCeEEEEecCCcEEEEECCCCeeee------eeeEEe----ecccCCCCCCeeEEEEecCCCCEEEEEECC---
Q 005352 442 VCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL------DAEICV----HSKKKAPCKRITGFQFLPQDSSKVMVSCAD--- 508 (701)
Q Consensus 442 i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~------~~~~~~----~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d--- 508 (701)
++|++++..+++-..||.+.+|......... ...+.. ..........+..+.|.. +...++....+
T Consensus 432 vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 510 (928)
T PF04762_consen 432 VAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLLVLSDSDSNQ 510 (928)
T ss_pred EEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC-CCEEEEEEecCccc
Confidence 9999999889999999999999965443221 001111 001122345678888887 34444444443
Q ss_pred CcEEEEeCCccc---eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 509 SQVRILQGPNVI---GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 509 g~I~iwd~~~~~---~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
..+.+++..... ...........+..+...++...++.-..+|.++..+.....
T Consensus 511 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 511 SKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred ceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 677778764322 122222234555555555555546666779999977766554
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=1.9e-05 Score=84.94 Aligned_cols=192 Identities=9% Similarity=0.064 Sum_probs=123.3
Q ss_pred CeEEEEEecCC-e-EEEEEC---CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEE-EcC--CcEEEEeCCCC
Q 005352 356 EILDLSWSKNN-Y-LLSASI---DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISG-SID--GKVRIWAVLSC 427 (701)
Q Consensus 356 ~I~~l~~s~~~-~-l~s~s~---dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sg-s~d--g~v~iwd~~~~ 427 (701)
.+....|+|++ . ++..+. +..|.++|+.+++........+......|+| +++.++.. +.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 67789999998 4 554443 3569999999988776666666677888999 88766543 333 46888898888
Q ss_pred cEEEEecCCCcEEEEEEeeCCCeEEEEec-CC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 428 ~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
+...+...........|+|||+.|+..+. .| .|.++|+.++..... .. .. . ....|+| +++.++.
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl---t~----~g--~--~~~~~SP-DG~~Ia~ 335 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV---VF----HG--K--NNSSVST-YKNYIVY 335 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC---cc----CC--C--cCceECC-CCCEEEE
Confidence 76666555544456689999998877664 23 577778876654211 00 01 1 1248999 5666655
Q ss_pred EECC---------CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCC
Q 005352 505 SCAD---------SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGED---SNVYMWNCIGHE 562 (701)
Q Consensus 505 ~s~d---------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D---g~I~iWd~~~~~ 562 (701)
.+.. ..|.+.|+.......-. .........|+|||++|+..+.+ ..+.+.+++...
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT--~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYIRRLT--ANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCeEECC--CCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 5543 36788887643322111 11233358899999988766533 236677776543
No 291
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.58 E-value=3.6e-05 Score=76.57 Aligned_cols=192 Identities=16% Similarity=0.134 Sum_probs=123.4
Q ss_pred ecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-cCC----C
Q 005352 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIR----Q 437 (701)
Q Consensus 363 s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~----~ 437 (701)
..++++++++.++.|..||..+++.+..+.....+...... .+..++.+..++.|+.+|..+++.+-.. ... .
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 34568888899999999999999999888744433222222 4566777778899999999999887542 211 1
Q ss_pred cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC---CCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP---CKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 438 ~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~---~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
..........+..++++..++.|..+|+.+++........... ...+ ...+..-.... ++ .++++..++.+.-+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~ 188 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR-GSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV 188 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC-CCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE
Confidence 2223333444888999998999999999999876544331100 0000 01122222222 23 77777777764444
Q ss_pred eCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 515 QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|..+........ ...+.. ....++..|+.++.++.|+.||+.+++
T Consensus 189 d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 189 DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 988776555332 222222 245678888888899999999999986
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.55 E-value=1.7e-07 Score=99.86 Aligned_cols=238 Identities=16% Similarity=0.241 Sum_probs=160.4
Q ss_pred ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
+-++......-.||.+.+.......+ .+.+|..+|+.+.|.|. ...||+++.|-.+..||+.+..
T Consensus 83 ~wiVsts~qkaiiwnlA~ss~~aIef----~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---------- 148 (1081)
T KOG0309|consen 83 YWIVSTSNQKAIIWNLAKSSSNAIEF----VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---------- 148 (1081)
T ss_pred eeEEecCcchhhhhhhhcCCccceEE----EEecCccceeccccCCCCCcceeeccccccceeeeccCCC----------
Confidence 33445556667788775544333222 36789999999999986 4579999999999999997753
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s 372 (701)
.++..+..-...-..++|+-.. .+++.+
T Consensus 149 ---------------------------------------------------~p~ys~~~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 149 ---------------------------------------------------RPFYSTSSWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred ---------------------------------------------------cceeeeecccccCceeeecccCcchhhhc
Confidence 2333344444556778898766 778888
Q ss_pred CCCcEEEEECCCCe-eeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc--EEEEecCCCcEEEEEEeeCC
Q 005352 373 IDKTVRLWRVGNDH-CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVTAVCYRPDG 448 (701)
Q Consensus 373 ~dg~I~iWd~~~~~-~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~i~~i~~sp~g 448 (701)
..+.|.+||++.+. ++..++ |...|+.++|+......+.+.+.||+|+.||..+.. .........+|..-+|.|-|
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG 257 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccC
Confidence 88999999998764 444454 778899999987667789999999999999987543 33555667788888899977
Q ss_pred CeEEEEec--CCcEEEEECCCCeeeeeee--EEeecccCCCCCCeeEEEEecC---------CCCEEEEEECCCcEEEEe
Q 005352 449 QGGIVGSM--MGDCRFYNVSDNHLELDAE--ICVHSKKKAPCKRITGFQFLPQ---------DSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 449 ~~l~~gs~--dg~v~i~d~~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~~p~---------~~~~l~~~s~dg~I~iwd 515 (701)
...++--. +..+.+++-++........ ........+|...|..+.|-.. ..-.|++-+.|..+++|-
T Consensus 258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 65544322 2245555554432221100 0111123455555655555331 124689999999999998
Q ss_pred CC
Q 005352 516 GP 517 (701)
Q Consensus 516 ~~ 517 (701)
+.
T Consensus 338 I~ 339 (1081)
T KOG0309|consen 338 ID 339 (1081)
T ss_pred cc
Confidence 65
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.54 E-value=8.2e-07 Score=88.93 Aligned_cols=100 Identities=17% Similarity=0.304 Sum_probs=85.2
Q ss_pred EEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE--EecCCCcEEEEEEeeC
Q 005352 370 SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--WVDIRQIVTAVCYRPD 447 (701)
Q Consensus 370 s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~--~~~~~~~i~~i~~sp~ 447 (701)
.++....+.+|....+.+...+.|-..++.++|+| |+.+++++..|..|+|-.......+. ..+|..-|..++..++
T Consensus 127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred ecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 44556677788777788888889999999999999 99999999999999998887766663 4568899999998865
Q ss_pred CCeEEEEecCCcEEEEECCCCeee
Q 005352 448 GQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 448 g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
..|++|+.|+++++||+.+++..
T Consensus 206 -~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 206 -YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred -ceeeecCCCCcEEEEecccCCcc
Confidence 46899999999999999998765
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=2.7e-05 Score=83.84 Aligned_cols=149 Identities=13% Similarity=0.013 Sum_probs=91.1
Q ss_pred cCeEEEEEecCC-eE-EEEECC--CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEc-CC--cEEEEeCCCC
Q 005352 355 GEILDLSWSKNN-YL-LSASID--KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSC 427 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l-~s~s~d--g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~-dg--~v~iwd~~~~ 427 (701)
+......|+|+| .+ ++.+.+ ..|.++|+.+++......+........|+| +++.|+..+. .+ .|.+.|+.++
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 345566799999 44 444444 468888988887555444444345568999 8887776653 23 5888888888
Q ss_pred cEEEEecCCCcEEEEEEeeCCCeEEEEecC---------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC
Q 005352 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (701)
Q Consensus 428 ~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d---------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~ 498 (701)
+.......... ...|+|+|+.|+..... ..|.++|+.++....- .. . .......|+| +
T Consensus 312 ~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L-----T~--~---~~~~~p~~SP-D 378 (419)
T PRK04043 312 SVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL-----TA--N---GVNQFPRFSS-D 378 (419)
T ss_pred CeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC-----CC--C---CCcCCeEECC-C
Confidence 76544332222 24899999988877653 2678888877653211 11 0 1223478999 5
Q ss_pred CCEEEEEEC-CC--cEEEEeCC
Q 005352 499 SSKVMVSCA-DS--QVRILQGP 517 (701)
Q Consensus 499 ~~~l~~~s~-dg--~I~iwd~~ 517 (701)
+..++.... .+ .+.++++.
T Consensus 379 G~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 379 GGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCEEEEEEccCCcEEEEEEecC
Confidence 665555443 22 24455554
No 295
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.47 E-value=9.1e-05 Score=75.81 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=129.3
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCC-cEEEEeCCCCcEEEEecCCCcEEEEEEe
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG-KVRIWAVLSCHVVDWVDIRQIVTAVCYR 445 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg-~v~iwd~~~~~~~~~~~~~~~i~~i~~s 445 (701)
+++..|. |...|.+...+- ...+.+.+.|.-..+.. +++-++.|..|| .+-|||..++++......-+.|.++..+
T Consensus 334 ~ia~VSR-GkaFi~~~~~~~-~iqv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs 410 (668)
T COG4946 334 YIALVSR-GKAFIMRPWDGY-SIQVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVS 410 (668)
T ss_pred EEEEEec-CcEEEECCCCCe-eEEcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEc
Confidence 6666665 456666554443 33456777788888887 777899999999 8999999999988888888999999999
Q ss_pred eCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC----CcEEEEeCCccce
Q 005352 446 PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD----SQVRILQGPNVIG 521 (701)
Q Consensus 446 p~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d----g~I~iwd~~~~~~ 521 (701)
|+|+.++++.....+.++|+.++..... .++...-|+.+.|+| ++.+++-+--+ ..|+++|+...+.
T Consensus 411 ~dGK~~vvaNdr~el~vididngnv~~i--------dkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 411 PDGKKVVVANDRFELWVIDIDNGNVRLI--------DKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred CCCcEEEEEcCceEEEEEEecCCCeeEe--------cccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE
Confidence 9999999999999999999999876432 344557799999999 78888876654 4689999875332
Q ss_pred eeecccCCCCeEEEEEecCCCEEEEEe
Q 005352 522 KYKGLRRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 522 ~~~~~~~~~~v~~l~~s~dg~~l~sgs 548 (701)
+......+.=.+-+|.|++++|.--+
T Consensus 482 -y~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 482 -YDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -EEecCCcccccCcccCCCCcEEEEEe
Confidence 22222344446678999999886544
No 296
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.47 E-value=3.8e-07 Score=62.14 Aligned_cols=35 Identities=40% Similarity=0.900 Sum_probs=33.3
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
+.+++|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46889999999999999999999999999999997
No 297
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.7e-06 Score=87.54 Aligned_cols=204 Identities=14% Similarity=0.133 Sum_probs=148.4
Q ss_pred CCccCeEEEEEecCCeEEEEECCCcEEEEECCCCe---eeeeec-CCCCeEEEEEeeCCCCEEEEEEc-CCcEEEEeCCC
Q 005352 352 GHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH---CLRVFP-HSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLS 426 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~---~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~-dg~v~iwd~~~ 426 (701)
-|.+.|+.+......++++++.||.++.|.-..-. .+..+. |...|.+++.+- ++.++.+.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence 38888998887777799999999999999754322 222222 778888888887 8999999777 99999999987
Q ss_pred CcEEEEecCCCcEEEEEEeeC-C---CeEEE-EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCE
Q 005352 427 CHVVDWVDIRQIVTAVCYRPD-G---QGGIV-GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (701)
Q Consensus 427 ~~~~~~~~~~~~i~~i~~sp~-g---~~l~~-gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~ 501 (701)
-..+..+........++|... | ..+++ .-.+|.+.++|-....+.. ....+.|..+|..+.++| -+..
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~------~~fkklH~sPV~~i~y~q-a~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD------GYFKKLHFSPVKKIRYNQ-AGDS 158 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc------ceecccccCceEEEEeec-cccc
Confidence 665544444433334444322 2 13333 3457889999987655332 223566778999999999 6788
Q ss_pred EEEEECCCcEEEEeCCccce---------------eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 502 VMVSCADSQVRILQGPNVIG---------------KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 502 l~~~s~dg~I~iwd~~~~~~---------------~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+++....|.|..|......+ .+..........++.|+|+|..+.+-+.|..|+++++.+++.
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 88888899999998763111 111122456788999999999999999999999999999885
No 298
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.42 E-value=2.6e-05 Score=74.21 Aligned_cols=192 Identities=14% Similarity=-0.007 Sum_probs=127.9
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeee-ec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC-CcEEE
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRV-FP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-QIVTA 441 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~-~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~i~~ 441 (701)
.++|+.|+.-|...+|...+.+.... .. +...|+-+.=......-+..++.|.++++.++..+......... -.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 34899999999999999886643322 22 44433322111102234566778888888887654332211111 23889
Q ss_pred EEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce
Q 005352 442 VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG 521 (701)
Q Consensus 442 i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~ 521 (701)
+.++++++++++.+....|-+|.+......... +. .......-.+..|+. ....++++..||.+.|||++....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~----~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IY----EAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeee-eE----ecccCCCceeeeecc-CcceEEEEecCCcEEEEEeccccc
Confidence 999999999999999999999999876543322 11 111222334566777 678899999999999999985332
Q ss_pred ee-----ecccCCCCeEEEEEecCC--CEEEEEeCCCcEEEEeCCCCC
Q 005352 522 KY-----KGLRRSGNQLSACFTSDG--KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 522 ~~-----~~~~~~~~v~~l~~s~dg--~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.. ....|.+.+..+.|++-| .+|+..-.-+.+.+-|+++..
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 21 122388999999999866 355555556889999998876
No 299
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.40 E-value=4.9e-06 Score=83.52 Aligned_cols=155 Identities=13% Similarity=0.059 Sum_probs=106.9
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCCCe----eeeeecCCCCeEEEEEeeCCCCEEEEEEcCC---cEEEEeCCCCcE
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDH----CLRVFPHSNYVTCVHFNPVDDNYFISGSIDG---KVRIWAVLSCHV 429 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~----~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg---~v~iwd~~~~~~ 429 (701)
..+..++.+ +|+.+..++...++++.... ++..+......+.+.|.. +......+..-| .+.+|....+..
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecccccCc
Confidence 334456666 66666666666666654432 333333444455566655 444444444334 455555555778
Q ss_pred EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC
Q 005352 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (701)
Q Consensus 430 ~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg 509 (701)
....+|-..++.++++||+++++++..|..|++-....... .....-+|..-|..++.-+ ++.|++++.|+
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~-------IesfclGH~eFVS~isl~~--~~~LlS~sGD~ 215 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV-------IESFCLGHKEFVSTISLTD--NYLLLSGSGDK 215 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc-------hhhhccccHhheeeeeecc--CceeeecCCCC
Confidence 88899999999999999999999999999999977764322 2233445667888888877 46699999999
Q ss_pred cEEEEeCCcccee
Q 005352 510 QVRILQGPNVIGK 522 (701)
Q Consensus 510 ~I~iwd~~~~~~~ 522 (701)
+|++||+.+....
T Consensus 216 tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 216 TLRLWDITSGKLL 228 (390)
T ss_pred cEEEEecccCCcc
Confidence 9999998865443
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.39 E-value=0.00016 Score=70.05 Aligned_cols=241 Identities=14% Similarity=0.142 Sum_probs=122.7
Q ss_pred ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCC
Q 005352 213 EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE 292 (701)
Q Consensus 213 ~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~ 292 (701)
+..+++.-.|..|.|...+....... .+.+.-+.-...=.-++||||+.+||.+...|+|+++|+..... ..+....
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~--~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~ 84 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSII--GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAM 84 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchhee--EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCccc
Confidence 34555567778888876554322211 11122222233457899999999999999999999999875432 1111100
Q ss_pred CCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC-------
Q 005352 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN------- 365 (701)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~------- 365 (701)
. +.. .-...|..+.|.+.
T Consensus 85 ~------~~~-------------------------------------------------d~~~Aiagl~Fl~~~~s~~ws 109 (282)
T PF15492_consen 85 S------FPG-------------------------------------------------DLSDAIAGLIFLEYKKSAQWS 109 (282)
T ss_pred c------cCC-------------------------------------------------ccccceeeeEeeccccccccc
Confidence 0 000 00122333332211
Q ss_pred CeEEEEECCCcEEEEECCC-----Ceeeeeec----CCCCeEEEEEeeCCCCEEEEEEcCCc-EEEEeCCCCcEEEEecC
Q 005352 366 NYLLSASIDKTVRLWRVGN-----DHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGK-VRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 366 ~~l~s~s~dg~I~iWd~~~-----~~~~~~~~----h~~~V~~l~f~p~~~~~l~sgs~dg~-v~iwd~~~~~~~~~~~~ 435 (701)
..|+.-...|.++-|-+.. .+....|. +...|.++.++| ..++|+.|+.... -..+.....-+..+.-.
T Consensus 110 ~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL 188 (282)
T PF15492_consen 110 YELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRIL 188 (282)
T ss_pred eeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEc
Confidence 1566666777777665422 22333333 577899999999 6677776653321 00010000001111111
Q ss_pred CCcEEEEEE-eeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 436 RQIVTAVCY-RPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 436 ~~~i~~i~~-sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
.+......+ ..+...-.... +..+|.+-+. ............|..+..+| ++..|++...+|.|.+|
T Consensus 189 ~~~Pyyk~v~~~~~~~~~~~~---~~~~~~~~~~--------~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW 256 (282)
T PF15492_consen 189 SDSPYYKQVTSSEDDITASSK---RRGLLRIPSF--------KFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLW 256 (282)
T ss_pred CCCCcEEEccccCcccccccc---ccceeeccce--------eeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEE
Confidence 111111000 00000100111 1122222211 11222334457799999999 89999999999999999
Q ss_pred eCCccceeee
Q 005352 515 QGPNVIGKYK 524 (701)
Q Consensus 515 d~~~~~~~~~ 524 (701)
++........
T Consensus 257 ~iPsL~~~~~ 266 (282)
T PF15492_consen 257 EIPSLRLQRS 266 (282)
T ss_pred ecCcchhhcc
Confidence 9986654443
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=8.9e-07 Score=86.76 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=113.7
Q ss_pred EEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCee
Q 005352 411 ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 411 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
++.+.+-.|-+-|+.++....+. ..+.|.++.|...++.++.|..+|.|..+|++....-.. .......|...|+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~----~~a~rlyh~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG----WCAQRLYHDSSVT 302 (425)
T ss_pred ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC----cceEEEEcCcchh
Confidence 45556778889999888655444 678899999999899999999999999999987521110 0111234668899
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEeCCcc-----ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 491 GFQFLPQDSSKVMVSCADSQVRILQGPNV-----IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg~I~iwd~~~~-----~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+++....++++|++.+.+|+|.+||.+.. ...+.+|.+...-.-+-..+....|++++.|...+||.++.+..
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence 99888878899999999999999998743 44566655555555556677788999999999999999998873
No 302
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.38 E-value=0.00023 Score=76.68 Aligned_cols=191 Identities=14% Similarity=0.067 Sum_probs=116.6
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEE--
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAV-- 442 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i-- 442 (701)
++.++.++.++.+..+|..+++.+........+.+--.- .+..++.+..++.|..+|..+++.+-......+...+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 447777888999999999999998888755544332111 2456677778999999999999887443322211000
Q ss_pred EEee--CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec-CCCCEEEEEECCCcEEEEeCCcc
Q 005352 443 CYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP-QDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 443 ~~sp--~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p-~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
.-+| .+..+++++.+|.+..+|..+++............. ........+...| -.+..+++++.++.+.-+|..+.
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~-~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA-TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc-cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 0111 234677888899999999998876543322110000 0000000011111 02456777788999999998876
Q ss_pred ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 520 IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 520 ~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
....+... .....+. ..+..|+.++.+|.++.+|..+++
T Consensus 277 ~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 277 QIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred CEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCc
Confidence 65554321 1111222 246678888899999999998886
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4.1e-06 Score=84.88 Aligned_cols=249 Identities=16% Similarity=0.175 Sum_probs=157.8
Q ss_pred ccCcceee-ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEe
Q 005352 202 KQGEGERV-RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQV 279 (701)
Q Consensus 202 ~~~~~~~~-~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~ 279 (701)
|+..+..+ ....+..+.++-||.++.|.-.. .....-...+++|.+.|.+++.+-+|.++.|.+. |..++++|+
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~----isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSR----ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCC----ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 33444333 33446677799999999995322 1112222346779999999999999999999888 999999999
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
++-..+.-+++...+..+......+ ..+..+..+ ...+..+.+++...- .......-.-|..+|.+
T Consensus 84 En~DminmiKL~~lPg~a~wv~skG-d~~s~IAVs-----------~~~sg~i~VvD~~~d--~~q~~~fkklH~sPV~~ 149 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVTSKG-DKISLIAVS-----------LFKSGKIFVVDGFGD--FCQDGYFKKLHFSPVKK 149 (558)
T ss_pred eccchhhhcccccCCCceEEecCCC-CeeeeEEee-----------cccCCCcEEECCcCC--cCccceecccccCceEE
Confidence 8876554444444333333222221 111111111 111112222222110 01223334569999999
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCC------Ceeeeee----------cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGN------DHCLRVF----------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~------~~~~~~~----------~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
+.+++-+ .+++....|.|.-|.... .+....+ +.....+++.|+| ++..+.+-+.|..|+++
T Consensus 150 i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 150 IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGF 228 (558)
T ss_pred EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEE
Confidence 9999988 888888899999998863 1111112 1456788999999 99999999999999999
Q ss_pred eCCCCcEEEEecC----------------------------------CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC
Q 005352 423 AVLSCHVVDWVDI----------------------------------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 423 d~~~~~~~~~~~~----------------------------------~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
+..++++++.++. ...-+.++|...|++|+-|+.=| |++.++.++
T Consensus 229 ~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn 307 (558)
T KOG0882|consen 229 VFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN 307 (558)
T ss_pred EeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC
Confidence 9998865432210 01235577777888888777644 677777766
Q ss_pred ee
Q 005352 469 HL 470 (701)
Q Consensus 469 ~~ 470 (701)
..
T Consensus 308 ~v 309 (558)
T KOG0882|consen 308 TV 309 (558)
T ss_pred eE
Confidence 54
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.34 E-value=2.2e-05 Score=86.29 Aligned_cols=177 Identities=12% Similarity=0.120 Sum_probs=134.6
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecC-CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE-ecCCCcEEEEEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPH-SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-VDIRQIVTAVCY 444 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h-~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~-~~~~~~i~~i~~ 444 (701)
.++.|+....+..+|+++.+..+...- ...|+-+.. +++++.+|...|+|.+-|.++.+.+.. ..|.+.|..+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD- 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD- 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee-
Confidence 677788888899999999888877763 334666654 678999999999999999999988854 45777777655
Q ss_pred eeCCCeEEEEec---------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 445 RPDGQGGIVGSM---------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 445 sp~g~~l~~gs~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
-.|+.|++++. |..|++||+++.+.....++ .....-+.|+|.-...+++++..|+..+.|
T Consensus 225 -v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---------~~~P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 225 -VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---------PYGPQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred -ccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---------ccCchhhhhcccccceEEEEecccceeecc
Confidence 46788888765 45589999998654322111 112255778887788999999999999999
Q ss_pred ---CCcc-ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 516 ---GPNV-IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 516 ---~~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
+.+. ...+........+..++++++|+.|+.|..+|.|.+|.
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 4333 33334444556699999999999999999999999998
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.24 E-value=2.9e-06 Score=57.71 Aligned_cols=37 Identities=41% Similarity=0.809 Sum_probs=34.8
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWR 381 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd 381 (701)
++++.+.+|...|.+|+|+|++ +|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678899999999999999998 999999999999997
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=3.1e-06 Score=83.02 Aligned_cols=122 Identities=9% Similarity=0.216 Sum_probs=95.3
Q ss_pred CccCeEEEEEecCC-eEEEEECCCcEEEEECCCC-----eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 353 HSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND-----HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 353 h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~-----~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
.++.|.++.|...+ +++.|..+|.|...|++.+ .+...+-|...|++++....++.+|++.+.+|+|++||++.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 45788899998866 9999999999999999865 56777889999999988766788999999999999999987
Q ss_pred CcE---E-EEecCCCcE--EEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeee
Q 005352 427 CHV---V-DWVDIRQIV--TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 427 ~~~---~-~~~~~~~~i--~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~ 474 (701)
-++ + ...+|-..- .-+-+.+....+++++.|-..+||.++.+++..+.
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 655 3 333342221 11233456667888999999999999999876543
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.24 E-value=1.6e-05 Score=87.33 Aligned_cols=184 Identities=14% Similarity=0.196 Sum_probs=135.4
Q ss_pred ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005352 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (701)
Q Consensus 210 ~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~ 289 (701)
..+++.++.|+--..+..+|+.+.... +...-..+.|+-|+. ++++|.+|...|+|.+-|..+.
T Consensus 144 ~~~~~~~i~Gg~Q~~li~~Dl~~~~e~-------r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~------- 207 (1118)
T KOG1275|consen 144 HMGPSTLIMGGLQEKLIHIDLNTEKET-------RTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF------- 207 (1118)
T ss_pred ccCCcceeecchhhheeeeecccceee-------eeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC-------
Confidence 345566677777777777776543211 111112334666655 6789999999999999998765
Q ss_pred CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEE
Q 005352 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL 369 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~ 369 (701)
+.++++..|.+.|.++... .+.|+
T Consensus 208 -------------------------------------------------------~~iht~~aHs~siSDfDv~-GNlLi 231 (1118)
T KOG1275|consen 208 -------------------------------------------------------ETIHTFDAHSGSISDFDVQ-GNLLI 231 (1118)
T ss_pred -------------------------------------------------------ceeeeeeccccceeeeecc-CCeEE
Confidence 4567888999999988764 22788
Q ss_pred EEEC---------CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe---CCCCc--EEEEecC
Q 005352 370 SASI---------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA---VLSCH--VVDWVDI 435 (701)
Q Consensus 370 s~s~---------dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd---~~~~~--~~~~~~~ 435 (701)
+++. |.-|+|||++..+.+..++......-+.|+|.-...+++++..|...+-| +.+.. .......
T Consensus 232 tCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~ 311 (1118)
T KOG1275|consen 232 TCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN 311 (1118)
T ss_pred EeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC
Confidence 8765 45689999999888887775555577889997778899999999999999 43332 2233334
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEEC
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~ 465 (701)
...+.+++++++++.++.|..+|.|.+|--
T Consensus 312 ~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 312 GSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCcceeEEecCCCceEEEecccCcEeeecC
Confidence 455999999999999999999999999983
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=7.3e-05 Score=75.14 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=72.9
Q ss_pred CeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe
Q 005352 346 PLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd 423 (701)
+..-+.+|...|.+++|+|.. ++..++.+.+|+|.|+++..++..+.....+.+++|.-.+.+++.+|-.+|.|.|||
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEE
Confidence 344667888999999999976 788999999999999999999999987799999999986778899999999999999
Q ss_pred CCCC
Q 005352 424 VLSC 427 (701)
Q Consensus 424 ~~~~ 427 (701)
++..
T Consensus 265 ~R~~ 268 (463)
T KOG1645|consen 265 MRQP 268 (463)
T ss_pred ccCC
Confidence 9864
No 309
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=1.3e-06 Score=94.87 Aligned_cols=202 Identities=16% Similarity=0.206 Sum_probs=132.1
Q ss_pred hhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecc
Q 005352 236 ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315 (701)
Q Consensus 236 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (701)
-++.+.....++.|+..-+|++|+-+.+.|+.|+..|.|+++++.+|.....+..+......+.-...+...+....++.
T Consensus 1087 IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1087 IFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred hHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC
Confidence 44555556678889999999999999999999999999999999999877777666554433322222222111111111
Q ss_pred ccceeeEEeeecCCccEEEcCCcccccc--CCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee-
Q 005352 316 EKISILKSLRRTSESACVVFPPKVFRIL--EKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF- 391 (701)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~- 391 (701)
.-. ..|+.. ..+.+.|.+ -.++.|+... .-+.|..-....+||+.++..+.++
T Consensus 1167 Pls-------------------aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1167 PLS-------------------ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred chH-------------------HHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhc
Confidence 000 011111 134444443 4578888765 3344444467899999999877764
Q ss_pred c----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC
Q 005352 392 P----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (701)
Q Consensus 392 ~----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~ 467 (701)
. ....-++..|+| ++.+++ .|| .+||++..+.+..++.-..-..=.|+|.|..++..+. |||+++
T Consensus 1224 t~~~~~~y~~n~a~FsP-~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1224 TDTVTSSYSNNLAHFSP-CDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred CcchhhhhhccccccCC-CcceEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhHH
Confidence 2 222337888999 777665 355 4799998877765544333334579999999998774 999998
Q ss_pred Ceee
Q 005352 468 NHLE 471 (701)
Q Consensus 468 ~~~~ 471 (701)
-++.
T Consensus 1293 F~lL 1296 (1516)
T KOG1832|consen 1293 FKLL 1296 (1516)
T ss_pred HHHH
Confidence 7653
No 310
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.16 E-value=0.00021 Score=77.84 Aligned_cols=144 Identities=14% Similarity=0.010 Sum_probs=97.4
Q ss_pred CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE--------------------------------------
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-------------------------------------- 414 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs-------------------------------------- 414 (701)
..+.+.+.|..+.+...++.-.+....++++| ++.++++.+
T Consensus 213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~ 291 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK 291 (635)
T ss_pred eeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence 34567777888777776665444556667777 666665554
Q ss_pred --cCCcEEEEeCCC-----CcEEEEecCCCcEEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeeeEE----eeccc
Q 005352 415 --IDGKVRIWAVLS-----CHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEIC----VHSKK 482 (701)
Q Consensus 415 --~dg~v~iwd~~~-----~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~----~~~~~ 482 (701)
.++.|.+.|..+ .+++..+........+.++|||+++++++. +++|.++|+.+.+......+. +....
T Consensus 292 ~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 292 TIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred EECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 134588888887 466677778888999999999999888765 899999999875532111111 11111
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 483 ~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
.....-...+|.+ ++..+.+-..|++|..|++...
T Consensus 372 -evGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~a 406 (635)
T PRK02888 372 -ELGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEAA 406 (635)
T ss_pred -ccCCCcceEEECC-CCCEEEeEeecceeEEEehHHH
Confidence 1123344567777 5677777888999999998753
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.14 E-value=0.0021 Score=64.40 Aligned_cols=231 Identities=14% Similarity=0.125 Sum_probs=144.0
Q ss_pred EEEEcc-CCCEEEEEeCCCc-EEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccE
Q 005352 255 TMKFSP-DGQYLASAGDDGV-VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (701)
Q Consensus 255 ~l~fsp-dg~~Lasgs~Dg~-I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (701)
.++.+| .+..++.+-.-|+ ..+||..+++.+..+..
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a------------------------------------------ 46 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA------------------------------------------ 46 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC------------------------------------------
Confidence 577788 5666777777665 57899988876554432
Q ss_pred EEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC-----CCcEEEEECC-CCeeeeeec-CCCCeEEEEEee
Q 005352 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-----DKTVRLWRVG-NDHCLRVFP-HSNYVTCVHFNP 404 (701)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~-----dg~I~iWd~~-~~~~~~~~~-h~~~V~~l~f~p 404 (701)
.+-+.|.||. .|+++| +|++.-. .|.|-|||.. +.+.+..|. +.-....+.+.|
T Consensus 47 ------------~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p 108 (305)
T PF07433_consen 47 ------------PPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP 108 (305)
T ss_pred ------------CCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC
Confidence 2335677883 689999 6666533 4789999998 566777776 444566778888
Q ss_pred CCCCEEEEEEc------------------CCcEEEEeCCCCcEEEEe-----cCCCcEEEEEEeeCCCeEEEEecCCc--
Q 005352 405 VDDNYFISGSI------------------DGKVRIWAVLSCHVVDWV-----DIRQIVTAVCYRPDGQGGIVGSMMGD-- 459 (701)
Q Consensus 405 ~~~~~l~sgs~------------------dg~v~iwd~~~~~~~~~~-----~~~~~i~~i~~sp~g~~l~~gs~dg~-- 459 (701)
++..|+.+-. +-.+.+.|..+++++... .+.-.|..+++.++|..++..-..|.
T Consensus 109 -DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~ 187 (305)
T PF07433_consen 109 -DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG 187 (305)
T ss_pred -CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC
Confidence 8877766531 234556677788877442 24567999999999876666544433
Q ss_pred -----EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE-EEEECCCcEEEEeCCccceeeecccCCCCeE
Q 005352 460 -----CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV-MVSCADSQVRILQGPNVIGKYKGLRRSGNQL 533 (701)
Q Consensus 460 -----v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l-~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~ 533 (701)
+-+++....-..+. . ...........+-+|++++ ++..+ +++-..+.+.+||..+....-.. .-..+.
T Consensus 188 ~~~PLva~~~~g~~~~~~~--~-p~~~~~~l~~Y~gSIa~~~-~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--~l~D~c 261 (305)
T PF07433_consen 188 DAPPLVALHRRGGALRLLP--A-PEEQWRRLNGYIGSIAADR-DGRLIAVTSPRGGRVAVWDAATGRLLGSV--PLPDAC 261 (305)
T ss_pred ccCCeEEEEcCCCcceecc--C-ChHHHHhhCCceEEEEEeC-CCCEEEEECCCCCEEEEEECCCCCEeecc--ccCcee
Confidence 33333222110000 0 0001123346789999999 55555 55556889999998765543332 344566
Q ss_pred EEEEecCCCEEEEEeCCCcEE
Q 005352 534 SACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 534 ~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
.++-.+++ +++|.+ .|.+.
T Consensus 262 Gva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 262 GVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred eeeecCCc-eEEeCC-CccEE
Confidence 67766666 566554 45433
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00024 Score=77.64 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=103.4
Q ss_pred ecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCC-----CCEEEEEEcCCcEEEEeCC---CCcEEEEe
Q 005352 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVD-----DNYFISGSIDGKVRIWAVL---SCHVVDWV 433 (701)
Q Consensus 363 s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~-----~~~l~sgs~dg~v~iwd~~---~~~~~~~~ 433 (701)
..+| +++|||.||+|.|-.+-+.+...++....++.+++++| + .+.+++|+.-| +.++.-+ ....+...
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~P-d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~ 157 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHP-DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS 157 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEecc-chhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence 3456 99999999999999999999888888889999999999 5 56799999888 7776432 22333455
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
...++|.+++|. |+++|-++.+| |++||+...+.....+... ........-..+.|.+ ...|+.| ...+|+|
T Consensus 158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~--~~~R~e~fpphl~W~~--~~~LVIG-W~d~v~i 229 (846)
T KOG2066|consen 158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPS--QSVRPELFPPHLHWQD--EDRLVIG-WGDSVKI 229 (846)
T ss_pred cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCC--CCCCcccCCCceEecC--CCeEEEe-cCCeEEE
Confidence 667899999996 66888777666 8999999877654332222 1122223345577766 3444444 4457888
Q ss_pred EeCC
Q 005352 514 LQGP 517 (701)
Q Consensus 514 wd~~ 517 (701)
..++
T Consensus 230 ~~I~ 233 (846)
T KOG2066|consen 230 CSIK 233 (846)
T ss_pred EEEe
Confidence 7766
No 313
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.0008 Score=74.20 Aligned_cols=168 Identities=13% Similarity=0.177 Sum_probs=105.5
Q ss_pred EEEcCCccC-eEEEEEecCC-eEEEEECCC-----cEEEEECCCC------eee---eeec-----CCCCeEEEEEeeCC
Q 005352 348 HEFHGHSGE-ILDLSWSKNN-YLLSASIDK-----TVRLWRVGND------HCL---RVFP-----HSNYVTCVHFNPVD 406 (701)
Q Consensus 348 ~~~~~h~~~-I~~l~~s~~~-~l~s~s~dg-----~I~iWd~~~~------~~~---~~~~-----h~~~V~~l~f~p~~ 406 (701)
+.++.+... |..+...... +|++.+.|+ .|+||+++.- +++ +.+. .+.++.+++.+. +
T Consensus 58 ~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~ 136 (933)
T KOG2114|consen 58 RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-D 136 (933)
T ss_pred ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-c
Confidence 334445555 4444333332 777777765 4999998532 344 3333 356788999998 8
Q ss_pred CCEEEEEEcCCcEEEEeCC-----CCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 407 DNYFISGSIDGKVRIWAVL-----SCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~-----~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
-+.+|+|..+|.|..+.-. ..+.......+++|+.+.+..+++.++-......|.+|.+....... . .
T Consensus 137 l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~----~---~ 209 (933)
T KOG2114|consen 137 LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSL----K---V 209 (933)
T ss_pred ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcce----e---e
Confidence 8999999999999998421 11233344567899999999999874334444679999998543111 1 1
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG 525 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~ 525 (701)
...+...+.|..+++..++ ++++ ....+.+|+.......+..
T Consensus 210 ld~~G~~lnCss~~~~t~q-fIca-~~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 210 LDNNGISLNCSSFSDGTYQ-FICA-GSEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred eccCCccceeeecCCCCcc-EEEe-cCceEEEEcCCCcceeeee
Confidence 2334567788888873332 4333 3457899987754444433
No 314
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.10 E-value=0.0036 Score=62.56 Aligned_cols=187 Identities=11% Similarity=0.054 Sum_probs=120.4
Q ss_pred EEEEec-CC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-
Q 005352 359 DLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI- 435 (701)
Q Consensus 359 ~l~~s~-~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~- 435 (701)
++.|.+ ++ ++++--..+.|..|+..+++... +.... ...+++...+ ..|+.+... .+.++|..+++...+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence 568887 56 55555568899999998876543 33333 7788888415 555555544 466669999876544332
Q ss_pred -----CCcEEEEEEeeCCCeEEEEecC--------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 436 -----RQIVTAVCYRPDGQGGIVGSMM--------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 436 -----~~~i~~i~~sp~g~~l~~gs~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
....+.+++.|+|+..++.... |.|..++.. ++...... .....++++|+|++..++
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---------~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---------GLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE---------EESSEEEEEEETTSSEEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec---------CcccccceEECCcchhee
Confidence 3458899999999966665443 557777776 34322111 114468999999433445
Q ss_pred EEEECCCcEEEEeCCccc------eeee-cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 503 MVSCADSQVRILQGPNVI------GKYK-GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~~~------~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
++-+..+.|..++..... ..+. .....+..-.+++..+|++.++.-..+.|.+++.+
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 566778899999875221 1221 11122347789999999988888889999999976
No 315
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.06 E-value=0.0028 Score=68.24 Aligned_cols=178 Identities=10% Similarity=-0.008 Sum_probs=107.9
Q ss_pred CeEEEEECCCcEEEEECCCCeeeeeecCCCC--------eEEEEEee-CCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC
Q 005352 366 NYLLSASIDKTVRLWRVGNDHCLRVFPHSNY--------VTCVHFNP-VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR 436 (701)
Q Consensus 366 ~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~--------V~~l~f~p-~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 436 (701)
+.++.++.++.+..+|..+++.+..+....+ ...+.-+| ..+..++.++.+|.+..+|..+++.+-.....
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 285 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG 285 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence 4566677788888888888877665531110 01111111 12456677778999999999999876333222
Q ss_pred CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
. ...+ ...+..+++++.+|.+..+|..+++........ ......+..+ .+..+++++.+|.|+.+|.
T Consensus 286 ~-~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-------~~~~~~sp~v---~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 286 S-VNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-------LHRLLTAPVL---YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred C-ccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEccccc-------CCCcccCCEE---ECCEEEEEeCCCEEEEEEC
Confidence 1 1112 234668888889999999999988754322110 0011111222 2467888999999999998
Q ss_pred CccceeeecccCCCCeE-EEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 517 PNVIGKYKGLRRSGNQL-SACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 517 ~~~~~~~~~~~~~~~v~-~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.+.....+.......+. ...+ .+..|+.++.||.|+.++.
T Consensus 353 ~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 353 EDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 87655444322222222 2222 2457888899999998764
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00014 Score=73.29 Aligned_cols=80 Identities=13% Similarity=0.210 Sum_probs=61.1
Q ss_pred CceeccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 243 GQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
.+-+.+|...|..|+|||... +|..++.+.+|+|.|+++...+..+
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy--------------------------------- 232 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY--------------------------------- 232 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe---------------------------------
Confidence 345678899999999999876 7888999999999999987544333
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCC
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGND 385 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~ 385 (701)
..| ..+++++|.-+. +++.|-.+|.|.|||++..
T Consensus 233 -----------------------------~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 233 -----------------------------IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred -----------------------------ecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 233 567777777765 7777777888888887543
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.00 E-value=0.0053 Score=62.31 Aligned_cols=272 Identities=14% Similarity=0.105 Sum_probs=158.6
Q ss_pred ceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC----------CCcEEEEEeecCeeeeeecCCC
Q 005352 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD----------DGVVRLWQVVEDERLTEVDIPE 292 (701)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----------Dg~I~iWd~~~~~~~~~~~~~~ 292 (701)
+++.|+|.++.. + .++.-.+..+ .+..+|+|+.+.++.. .-.|.+||..+.....++.++.
T Consensus 17 ~rv~viD~d~~k--~----lGmi~~g~~~---~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~ 87 (342)
T PF06433_consen 17 SRVYVIDADSGK--L----LGMIDTGFLG---NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP 87 (342)
T ss_dssp EEEEEEETTTTE--E----EEEEEEESSE---EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT
T ss_pred ceEEEEECCCCc--E----EEEeecccCC---ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC
Confidence 578888865432 1 1211122222 3567999998887543 4479999999988777776554
Q ss_pred CCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEE-
Q 005352 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS- 370 (701)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s- 370 (701)
.+.. ..-.+ ...++++.++ +++.
T Consensus 88 k~R~----------------------------------------------------~~~~~---~~~~~ls~dgk~~~V~ 112 (342)
T PF06433_consen 88 KPRA----------------------------------------------------QVVPY---KNMFALSADGKFLYVQ 112 (342)
T ss_dssp S-B------------------------------------------------------BS-----GGGEEE-TTSSEEEEE
T ss_pred cchh----------------------------------------------------eeccc---ccceEEccCCcEEEEE
Confidence 2110 00001 1123556676 3333
Q ss_pred -EECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC-CCcEEEE----ec-CCCcE-EEE
Q 005352 371 -ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-SCHVVDW----VD-IRQIV-TAV 442 (701)
Q Consensus 371 -~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~-~~~~~~~----~~-~~~~i-~~i 442 (701)
.+--..|.|-|+..++.+..+...+...-. |..+.-|.+-|.||.+.-..+. .++.... +. ...++ ..-
T Consensus 113 N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iy---P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~ 189 (342)
T PF06433_consen 113 NFTPATSVTVVDLAAKKVVGEIDTPGCWLIY---PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHP 189 (342)
T ss_dssp EESSSEEEEEEETTTTEEEEEEEGTSEEEEE---EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--
T ss_pred ccCCCCeEEEEECCCCceeeeecCCCEEEEE---ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCccccccc
Confidence 334567999999999999988876644332 3344568888999999999887 4444311 11 12222 233
Q ss_pred EEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc----cCCCCCCeeEEEEecCCCCEEEEEEC-------CC--
Q 005352 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----KKAPCKRITGFQFLPQDSSKVMVSCA-------DS-- 509 (701)
Q Consensus 443 ~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~~p~~~~~l~~~s~-------dg-- 509 (701)
++...+..++--+.+|.|+-.|+............+... ..-..+...-+++++..+.+++.--. |+
T Consensus 190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 455555566668889999999999887655544443221 11122334457777744343332211 11
Q ss_pred cEEEEeCCccceeeecccCCCCeEEEEEecCCC-EEEEE-eCCCcEEEEeCCCCC
Q 005352 510 QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK-HIVSA-GEDSNVYMWNCIGHE 562 (701)
Q Consensus 510 ~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~sg-s~Dg~I~iWd~~~~~ 562 (701)
.|.++|+.+.+...+.. ....+.++..+.+.+ +|++. ..++.+.+||..+++
T Consensus 270 eVWv~D~~t~krv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEEETTTTEEEEEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EEEEEECCCCeEEEEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 37777888766665553 234577899998775 66554 458999999999987
No 318
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.00 E-value=0.0017 Score=69.80 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=97.2
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 435 (701)
.-..+.|.+.+.+++-...++|.|+.--+.+..+.+.....+..|-. |.+|+..+ ++.|.+||+.+++.+..+..
T Consensus 70 ~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v 144 (443)
T PF04053_consen 70 SGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKS-SDFICFYDWETGKLIRRIDV 144 (443)
T ss_dssp E-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEE-TTEEEEE-TTT--EEEEESS
T ss_pred ceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEEC-CCCEEEEEhhHcceeeEEec
Confidence 44567899877888888889999974333333334544444555532 66666665 44899999999999988876
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC------------eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN------------HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~------------~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
.. |..+.|+++|++++..+.+ .+.+++.... ......++ ...|.+.+|.. ..++
T Consensus 145 ~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---------~~~IkSg~W~~---d~fi 210 (443)
T PF04053_consen 145 SA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI---------SERIKSGCWVE---DCFI 210 (443)
T ss_dssp -E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----------S--SEEEEET---TEEE
T ss_pred CC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe---------cceeEEEEEEc---CEEE
Confidence 64 8999999999999988754 6777665433 22111110 24577778865 2444
Q ss_pred EEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 504 VSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
-.+.. .|+.+-... ...+.. -..++.=+...+..+.|.....|+.|..+.++.
T Consensus 211 YtT~~-~lkYl~~Ge-~~~i~~--ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 211 YTTSN-HLKYLVNGE-TGIIAH--LDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EE-TT-EEEEEETTE-EEEEEE---SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEcCC-eEEEEEcCC-cceEEE--cCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 44444 666543222 111111 245666677788778888888999999888764
No 319
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.99 E-value=2.4e-06 Score=90.32 Aligned_cols=197 Identities=14% Similarity=0.177 Sum_probs=134.4
Q ss_pred ccCeEEEEEecCC---eEEEEECCCcEEEEECCCCeee-e--eecCCCCeEEEEEeeCCCCEEEEEEc----CCcEEEEe
Q 005352 354 SGEILDLSWSKNN---YLLSASIDKTVRLWRVGNDHCL-R--VFPHSNYVTCVHFNPVDDNYFISGSI----DGKVRIWA 423 (701)
Q Consensus 354 ~~~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~~~~-~--~~~h~~~V~~l~f~p~~~~~l~sgs~----dg~v~iwd 423 (701)
...+.|+++.-+. .++.|..+|.|.+-.++...-. . +-++..++++++|++.|.+.||+|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3456777766543 7888999999999988765433 2 22378899999999977788888742 46799999
Q ss_pred CCCCcEE-----EEec-CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 424 VLSCHVV-----DWVD-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 424 ~~~~~~~-----~~~~-~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
+.++-.+ .+.. ......++||..+.+.+++|.....++++|++...... .......+.++.+.|-
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~---------~svnTk~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV---------SSVNTKYVQGITVDPF 206 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh---------hhhhhhhcccceecCC
Confidence 9887221 1222 33456689999888999999999999999998432110 1112234667788886
Q ss_pred CCCEEEEEECCCcEEEEe-CCccceeeecccCC-----CCeEEEEEecCC-CEEEEEe-CCCcEEEEeCCC
Q 005352 498 DSSKVMVSCADSQVRILQ-GPNVIGKYKGLRRS-----GNQLSACFTSDG-KHIVSAG-EDSNVYMWNCIG 560 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd-~~~~~~~~~~~~~~-----~~v~~l~~s~dg-~~l~sgs-~Dg~I~iWd~~~ 560 (701)
.++++++.. |+.|-+|| ..+....+....+. ..+..++|.|.. ..+++.. ..++|+++++..
T Consensus 207 ~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 207 SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 667776655 99999999 44433333322222 248899999954 2445544 457899999864
No 320
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.96 E-value=0.0015 Score=64.75 Aligned_cols=182 Identities=14% Similarity=0.065 Sum_probs=112.8
Q ss_pred CCCcEEEEECCCCeeeeeecCCCCeEEEE--EeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCe
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHSNYVTCVH--FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~~~V~~l~--f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~ 450 (701)
.+|+|..||..+++.+............. ..+ ++..+++++.++.|..||..+++.+-.......+...- ...+..
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 36899999999999999887422122222 222 56677777899999999999998875554443322222 334567
Q ss_pred EEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCC
Q 005352 451 GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSG 530 (701)
Q Consensus 451 l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~ 530 (701)
+++++.++.+..+|..+++.......... ............+ .+..++++..++.|..+|..+............
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSS--PPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SS--CTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred cccccceeeeEecccCCcceeeeeccccc--cccccccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 77888888999999999987654211110 0011111222233 367888888899999999887666544432221
Q ss_pred C----------eEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 531 N----------QLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 531 ~----------v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
. +..-....++ .++.++.++.+.-+|+.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~ 194 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE 194 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC
Confidence 1 1122222344 77777778864444888876
No 321
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.96 E-value=4.4e-06 Score=88.37 Aligned_cols=238 Identities=15% Similarity=0.265 Sum_probs=141.7
Q ss_pred ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeC----CCcEEEEEeecCeeeeeec
Q 005352 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGD----DGVVRLWQVVEDERLTEVD 289 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~----Dg~I~iWd~~~~~~~~~~~ 289 (701)
-+++|..+|.|-+-..+.....- .....+|....++++|++ |...||.|-. |-.+.|||+.+.-.
T Consensus 72 IlavG~atG~I~l~s~r~~hdSs-----~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt----- 141 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDSS-----AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT----- 141 (783)
T ss_pred hhhhccccCceEEeecCCccccc-----ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccC-----
Confidence 34558888998888765443221 123456889999999988 5566777632 66799999977521
Q ss_pred CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEc-CCccCeEEEEEecCC-e
Q 005352 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSWSKNN-Y 367 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~s~~~-~ 367 (701)
.+.. .+ .|. +-.....+++|-.+. .
T Consensus 142 vPke---------------------------------------------------~~--~fs~~~l~gqns~cwlrd~kl 168 (783)
T KOG1008|consen 142 VPKE---------------------------------------------------SP--LFSSSTLDGQNSVCWLRDTKL 168 (783)
T ss_pred CCcc---------------------------------------------------cc--ccccccccCccccccccCcch
Confidence 0000 00 000 122334478888777 8
Q ss_pred EEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC-CCCc-EEEEec-----CCCcEE
Q 005352 368 LLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV-LSCH-VVDWVD-----IRQIVT 440 (701)
Q Consensus 368 l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~-~~~~-~~~~~~-----~~~~i~ 440 (701)
+++|...+.+.++|++........-.+..+..+.+.|...+++++-. ||.|.+||. ++-+ .+.... ....+.
T Consensus 169 vlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~ 247 (783)
T KOG1008|consen 169 VLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLF 247 (783)
T ss_pred hhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCccccee
Confidence 88888888999999985433323334557888888887888888876 999999994 3221 111111 223589
Q ss_pred EEEEeeCCC--eEEEEecCCcEEEEECCCCeeeeee---eEEee-----cccCCCCCCeeEEEEecCC-CCEEEEEECCC
Q 005352 441 AVCYRPDGQ--GGIVGSMMGDCRFYNVSDNHLELDA---EICVH-----SKKKAPCKRITGFQFLPQD-SSKVMVSCADS 509 (701)
Q Consensus 441 ~i~~sp~g~--~l~~gs~dg~v~i~d~~~~~~~~~~---~~~~~-----~~~~~~~~~i~~l~~~p~~-~~~l~~~s~dg 509 (701)
.++|.|... ..+..-..++|++||+....-.... ..... -........|.++.|++.. -...+++...-
T Consensus 248 ~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl 327 (783)
T KOG1008|consen 248 ALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINL 327 (783)
T ss_pred eEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccC
Confidence 999999543 3333445688999998642111000 00011 1122334677788888754 33444444444
Q ss_pred cEEEEeC
Q 005352 510 QVRILQG 516 (701)
Q Consensus 510 ~I~iwd~ 516 (701)
++.-+++
T Consensus 328 ~~~Df~V 334 (783)
T KOG1008|consen 328 QPKDFSV 334 (783)
T ss_pred Chhhccc
Confidence 4444443
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.96 E-value=0.0039 Score=62.51 Aligned_cols=200 Identities=12% Similarity=0.115 Sum_probs=127.2
Q ss_pred eEEEEEecCC--eEEEEECCCc-EEEEECCCCeeeeeecCC---CCeEEEEEeeCCCCEEEEEEc-----CCcEEEEeCC
Q 005352 357 ILDLSWSKNN--YLLSASIDKT-VRLWRVGNDHCLRVFPHS---NYVTCVHFNPVDDNYFISGSI-----DGKVRIWAVL 425 (701)
Q Consensus 357 I~~l~~s~~~--~l~s~s~dg~-I~iWd~~~~~~~~~~~h~---~~V~~l~f~p~~~~~l~sgs~-----dg~v~iwd~~ 425 (701)
...++.+|.. .++.+-.-|+ ..+||..+++....+... ..--.-.|++ ++++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence 3467778855 6666766665 778999999988877521 1223567999 9999998644 4789999998
Q ss_pred -CCcEE-EEecCCCcEEEEEEeeCCCeEEEEec------------------CCcEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 426 -SCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSM------------------MGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 426 -~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~------------------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
+-+.+ .+..+.-....+.+.|||+.|+++.. +..+.+.|..++++.-...+. ...+
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp----~~~~ 161 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP----PDLH 161 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC----cccc
Confidence 33444 45555556777889999988888632 233444455555543222110 1224
Q ss_pred CCCeeEEEEecCCCCEEEEEECCCc-------EEEEeCCccceeeec-----ccCCCCeEEEEEecCCCEEEEE-eCCCc
Q 005352 486 CKRITGFQFLPQDSSKVMVSCADSQ-------VRILQGPNVIGKYKG-----LRRSGNQLSACFTSDGKHIVSA-GEDSN 552 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~s~dg~-------I~iwd~~~~~~~~~~-----~~~~~~v~~l~~s~dg~~l~sg-s~Dg~ 552 (701)
...|..+++.+ ++..++..-..+. |-+++.......+.. ......+-++++++++.++++. -.-+.
T Consensus 162 ~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 162 QLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred ccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 46688888887 4444443333222 344444332222222 2245789999999999877554 46788
Q ss_pred EEEEeCCCCC
Q 005352 553 VYMWNCIGHE 562 (701)
Q Consensus 553 I~iWd~~~~~ 562 (701)
+.+||..++.
T Consensus 241 ~~~~d~~tg~ 250 (305)
T PF07433_consen 241 VAVWDAATGR 250 (305)
T ss_pred EEEEECCCCC
Confidence 9999999887
No 323
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.96 E-value=0.0036 Score=66.47 Aligned_cols=278 Identities=15% Similarity=0.186 Sum_probs=140.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee-eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT-EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (701)
.|+.|.|+++..-||.|...|.|.||.+..++... .......+.....+..+ .. ...+.....-...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~l~di~~r~~~ 70 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLN-----------NS-PGKLTDISDRAPP 70 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GG-----------GS-S-SEEE-GGG--T
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccccccc-----------CC-CcceEEehhhCCc
Confidence 48999999998899999999999999998765322 00000000000000000 00 0011111000000
Q ss_pred cEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec---------CCCCeEEEE
Q 005352 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP---------HSNYVTCVH 401 (701)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~---------h~~~V~~l~ 401 (701)
. ..-.-.|...+....++|++++.|.-|+++.|..+|.+.|.|++....+..-. ....|+++.
T Consensus 71 -------~-~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ie 142 (395)
T PF08596_consen 71 -------S-LKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIE 142 (395)
T ss_dssp -------T--SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEE
T ss_pred -------c-cccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEE
Confidence 0 00000355566667899999999988899999999999999998887766532 345788998
Q ss_pred EeeC----CC---CEEEEEEcCCcEEEEeCCC---Cc----EEEEe-cCCCcEEEEE-EeeC------------------
Q 005352 402 FNPV----DD---NYFISGSIDGKVRIWAVLS---CH----VVDWV-DIRQIVTAVC-YRPD------------------ 447 (701)
Q Consensus 402 f~p~----~~---~~l~sgs~dg~v~iwd~~~---~~----~~~~~-~~~~~i~~i~-~sp~------------------ 447 (701)
|... ++ -.+++|...|.+.+|.+.- +. ..... .+.++|..|. ++.+
T Consensus 143 F~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g 222 (395)
T PF08596_consen 143 FSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKG 222 (395)
T ss_dssp EEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred EEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccC
Confidence 8741 22 4688899999999998751 11 11222 4556665554 3221
Q ss_pred --CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe----cCCCCEEEEEECCCcEEEEeCCccce
Q 005352 448 --GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL----PQDSSKVMVSCADSQVRILQGPNVIG 521 (701)
Q Consensus 448 --g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----p~~~~~l~~~s~dg~I~iwd~~~~~~ 521 (701)
-..+++...+..++++...+.+..... . ........+.+. ...+..|++-..+|.|++|.+..+..
T Consensus 223 ~~i~g~vVvvSe~~irv~~~~~~k~~~K~-------~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 223 ISIPGYVVVVSESDIRVFKPPKSKGAHKS-------F-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp ----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred CCcCcEEEEEcccceEEEeCCCCccccee-------e-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 123555556788999998876643211 1 111122233342 12467788888999999999987655
Q ss_pred eeeccc----CCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 522 KYKGLR----RSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 522 ~~~~~~----~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.....- ....+...+++++|..++-.+. ..+.++.+
T Consensus 295 i~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 295 IKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp EEEEE-SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred hhcccCCCccccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 443321 1123445677888887766643 34444443
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=7.6e-06 Score=89.21 Aligned_cols=198 Identities=14% Similarity=0.133 Sum_probs=135.9
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCC--cEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDG--KVR 420 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg--~v~ 420 (701)
++...|+.|....+|++|+-.. +|+.|+..|.|+++++.+|....... |..+|+.+.-+. ++..+++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence 5567788899999999999877 99999999999999999998888777 999999999887 777776655433 467
Q ss_pred EEeCCC-CcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 421 IWAVLS-CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 421 iwd~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
+|++.. +.....+ ..-.++.|+...+.-++|+......+||+.++......- .........-+...|+|. .
T Consensus 1171 LW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl----t~~~~~~y~~n~a~FsP~-D 1242 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL----TDTVTSSYSNNLAHFSPC-D 1242 (1516)
T ss_pred HhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhc----CcchhhhhhccccccCCC-c
Confidence 898864 1222222 234567787766667778887889999999987543311 001111122366778884 4
Q ss_pred CEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 500 SKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.+++ .|| .+||.+........-... .-..-.|+|.|..++.-++ |||+.+.+
T Consensus 1243 ~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1243 TLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred ceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeech-----hhhhHHHH
Confidence 4443 233 468887543332221111 2223459999999998775 89998866
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=9.6e-05 Score=80.62 Aligned_cols=147 Identities=14% Similarity=0.129 Sum_probs=108.6
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeee
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL 472 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~ 472 (701)
....++|++++ +.+|+-|..+|.|++++..... ...+.|... ..+|.++++++.||+|.|..+-+.+...
T Consensus 38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhhHHHHHHhh---cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 55678888885 5899999999999999886543 333344333 6689999999999999999887766543
Q ss_pred eeeEEeecccCCCCCCeeEEEEecC----CCCEEEEEECCCcEEEEeCCcc--ceeeecccCCCCeEEEEEecCCCEEEE
Q 005352 473 DAEICVHSKKKAPCKRITGFQFLPQ----DSSKVMVSCADSQVRILQGPNV--IGKYKGLRRSGNQLSACFTSDGKHIVS 546 (701)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~l~~~p~----~~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~l~~s~dg~~l~s 546 (701)
... -..++.+++++|+ ....+++|+..| +.++.-+-. .....++...++|.+++| .|.+||-
T Consensus 108 ~~d---------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAW 175 (846)
T KOG2066|consen 108 QYD---------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAW 175 (846)
T ss_pred eEe---------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEE
Confidence 222 2256889999995 457889999988 777764311 122234557789999999 5778888
Q ss_pred EeCCCcEEEEeCCCCC
Q 005352 547 AGEDSNVYMWNCIGHE 562 (701)
Q Consensus 547 gs~Dg~I~iWd~~~~~ 562 (701)
++.+| |++||+...+
T Consensus 176 and~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 176 ANDDG-VKVYDTPTRQ 190 (846)
T ss_pred ecCCC-cEEEeccccc
Confidence 88776 9999998876
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=0.0024 Score=68.14 Aligned_cols=90 Identities=18% Similarity=0.359 Sum_probs=72.8
Q ss_pred EEEECCCCee----eeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEE
Q 005352 378 RLWRVGNDHC----LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV 453 (701)
Q Consensus 378 ~iWd~~~~~~----~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~ 453 (701)
.+|++...+. +..+..+..|.|++++| +...|+.|+.||.|.+||...+.. ......-.++.++|+|+|..+++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t-~~~ka~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVT-LLAKAEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCee-eeeeecccceEEEEcCCCcEEEE
Confidence 4566554432 23345889999999999 999999999999999999977643 34455677899999999999999
Q ss_pred EecCCcEEEEECCCCe
Q 005352 454 GSMMGDCRFYNVSDNH 469 (701)
Q Consensus 454 gs~dg~v~i~d~~~~~ 469 (701)
|+..|.+.+||+.-+.
T Consensus 317 ~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 317 GSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCceEEEEEeecCc
Confidence 9999999999987543
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00016 Score=78.83 Aligned_cols=107 Identities=12% Similarity=0.115 Sum_probs=86.5
Q ss_pred EEEEEecCC-eEEEEE----CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-
Q 005352 358 LDLSWSKNN-YLLSAS----IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD- 431 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s----~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~- 431 (701)
+-+.|+|.. +|+.++ ..|.|.|| ..+|++......+-.+++++|+| ..-.|+.|-.-|.+.+|...+.+...
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeee
Confidence 345788988 776665 35788888 35666665555556678899999 88888899889999999988776654
Q ss_pred EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECC
Q 005352 432 WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (701)
Q Consensus 432 ~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~ 466 (701)
...|+.+|..+.|+|+|..++++..-|.+.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 44688999999999999999999999999999876
No 328
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.88 E-value=0.0046 Score=60.98 Aligned_cols=205 Identities=13% Similarity=0.175 Sum_probs=116.7
Q ss_pred EEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 349 EFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 349 ~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
.+.+-...+..|+|.|+. +++.....+.|...+. +++.++.+. ..+..-.|++.- ++.++++--.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence 445666779999999975 6666667788888886 577887776 335678888875 5655555445888999988
Q ss_pred CCCc----EE--EEe------cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC--Ce-eeeeeeEEeecccCCCCCCe
Q 005352 425 LSCH----VV--DWV------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD--NH-LELDAEICVHSKKKAPCKRI 489 (701)
Q Consensus 425 ~~~~----~~--~~~------~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~--~~-~~~~~~~~~~~~~~~~~~~i 489 (701)
.... .. ..+ ..+..+-.++|+|.++.|+++-...-..+|.+.. .. ...................+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 3321 11 111 1345589999999999888888877777887764 11 11100000011123344668
Q ss_pred eEEEEecCCCCEEEEEECCCcEEEEeCCcc-ceeeeccc-------CCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 490 TGFQFLPQDSSKVMVSCADSQVRILQGPNV-IGKYKGLR-------RSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~-------~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
.++++.|..+.+++.+.....|.++|.... ...+.... .-...-.++|.++|++.+ .++-+..+++
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 999999988888888888899999996533 22233221 113467899999996444 4566666665
No 329
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.87 E-value=0.016 Score=55.53 Aligned_cols=105 Identities=12% Similarity=0.028 Sum_probs=84.2
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEE-EEEEe
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT-AVCYR 445 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~-~i~~s 445 (701)
+++.|+..+.+.--|..+++....-.....+.+-+.- -+++++.|+..|.+++.+..++.....+...+.|. .....
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d 102 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD 102 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence 8899999999999999999988877666777776665 46789999999999999999996664443333333 34567
Q ss_pred eCCCeEEEEecCCcEEEEECCCCeeeee
Q 005352 446 PDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (701)
Q Consensus 446 p~g~~l~~gs~dg~v~i~d~~~~~~~~~ 473 (701)
+++..+.+|+.|++.+..|..+......
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred CCCceEEEecCCCcEEEecccccceEEe
Confidence 8999999999999999999998776543
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.84 E-value=0.00065 Score=72.37 Aligned_cols=95 Identities=13% Similarity=0.154 Sum_probs=73.0
Q ss_pred EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEec
Q 005352 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTS 539 (701)
Q Consensus 460 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 539 (701)
-.+|++..+++...... .......+.+++++| +...++.|+.||.|.+||.......+.. ..-.++.++|+|
T Consensus 238 ~ciYE~~r~klqrvsvt-----sipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~~~k--a~~~P~~iaWHp 309 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVT-----SIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTLLAK--AEFIPTLIAWHP 309 (545)
T ss_pred EEEEEeecCceeEEEEE-----EEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeeeeee--ecccceEEEEcC
Confidence 35777776655432211 223446799999999 7899999999999999998766555442 456678999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCC
Q 005352 540 DGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 540 dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+|.++++|+..|.+.+||+.-..
T Consensus 310 ~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 310 DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CCcEEEEEcCCceEEEEEeecCc
Confidence 99999999999999999986543
No 331
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.84 E-value=0.0028 Score=72.66 Aligned_cols=200 Identities=16% Similarity=0.173 Sum_probs=125.2
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
..+.|.++.|..++.-++.+..+|.|.+-|.++....
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e------------------------------------------- 103 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE------------------------------------------- 103 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee-------------------------------------------
Confidence 3468999999999998999999999999887665310
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEEC----CCCeee---------------
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRV----GNDHCL--------------- 388 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~----~~~~~~--------------- 388 (701)
....-...|.+++|+|+. .++..+..+++.+-.- -..+.+
T Consensus 104 --------------------ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGw 163 (1265)
T KOG1920|consen 104 --------------------IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGW 163 (1265)
T ss_pred --------------------eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecc
Confidence 111134678899999998 6666666666655322 111111
Q ss_pred ----eeec----------------------CCCCeEEEEEeeCCCCEEEEEE----cC-CcEEEEeCCCCcEEE-EecCC
Q 005352 389 ----RVFP----------------------HSNYVTCVHFNPVDDNYFISGS----ID-GKVRIWAVLSCHVVD-WVDIR 436 (701)
Q Consensus 389 ----~~~~----------------------h~~~V~~l~f~p~~~~~l~sgs----~d-g~v~iwd~~~~~~~~-~~~~~ 436 (701)
..|. ..+.=+.|.|-- ++.+|++.. .+ ..|+|||.. +.+-. .....
T Consensus 164 GrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~ 241 (1265)
T KOG1920|consen 164 GRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVE 241 (1265)
T ss_pred cccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCccc
Confidence 0110 011123478877 888998832 23 789999987 43322 22233
Q ss_pred CcEEEEEEeeCCCeEEEE---ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE---EECCCc
Q 005352 437 QIVTAVCYRPDGQGGIVG---SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV---SCADSQ 510 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~g---s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~---~s~dg~ 510 (701)
+.-.+++|-|.|..+++- +.++.|.+|.-+.-..- . +.+ ........+..++|+. ++..|++ ......
T Consensus 242 ~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg-~--f~l--~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~ 315 (1265)
T KOG1920|consen 242 GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG-E--FVL--PFPLDEKEVEELAWNS-NSDILAVVTSNLENSL 315 (1265)
T ss_pred ccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc-c--ccc--CCcccccchheeeecC-CCCceeeeecccccce
Confidence 455689999999988875 34567888876542210 0 000 0111123389999999 6777777 444566
Q ss_pred EEEEeCCcc
Q 005352 511 VRILQGPNV 519 (701)
Q Consensus 511 I~iwd~~~~ 519 (701)
|++|-..+.
T Consensus 316 v~lwt~~Ny 324 (1265)
T KOG1920|consen 316 VQLWTTGNY 324 (1265)
T ss_pred EEEEEecCe
Confidence 999998753
No 332
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.83 E-value=0.0014 Score=75.07 Aligned_cols=197 Identities=13% Similarity=0.112 Sum_probs=134.8
Q ss_pred ccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC----CC--
Q 005352 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV----LS-- 426 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~----~~-- 426 (701)
.+.|.++.|..+. .++.+...|.|.+-|..+......-.-.+.|.+++|+| |+..++..+..+++.+-+- -.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhcc
Confidence 3689999999888 88888889999999988876655555678899999999 9999998888777766432 00
Q ss_pred ---------CcEE---------EEec---------------------CCCcEEEEEEeeCCCeEEEE-----ecCCcEEE
Q 005352 427 ---------CHVV---------DWVD---------------------IRQIVTAVCYRPDGQGGIVG-----SMMGDCRF 462 (701)
Q Consensus 427 ---------~~~~---------~~~~---------------------~~~~i~~i~~sp~g~~l~~g-----s~dg~v~i 462 (701)
++.+ ++.+ ....=++|+|--||+++++. .....+++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0101 0110 11123459999999999983 33378999
Q ss_pred EECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE---CCCcEEEEeCCcccee---eecccCCCCeEEEE
Q 005352 463 YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC---ADSQVRILQGPNVIGK---YKGLRRSGNQLSAC 536 (701)
Q Consensus 463 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s---~dg~I~iwd~~~~~~~---~~~~~~~~~v~~l~ 536 (701)
||-+ +.+.. ........-.+++|-| .+..+++.. .|+.|.+|.-+...+- .........+..++
T Consensus 227 ~drE-g~Lns--------~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 227 YDRE-GALNS--------TSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred eccc-chhhc--------ccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence 9987 33221 1222233446789999 677777654 3678999986543322 22222344589999
Q ss_pred EecCCCEEEE---EeCCCcEEEEeCCCC
Q 005352 537 FTSDGKHIVS---AGEDSNVYMWNCIGH 561 (701)
Q Consensus 537 ~s~dg~~l~s---gs~Dg~I~iWd~~~~ 561 (701)
|+.++..|++ ......|++|-+.+-
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ecCCCCceeeeecccccceEEEEEecCe
Confidence 9999999987 555666999987764
No 333
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.0019 Score=69.98 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=103.4
Q ss_pred ceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeee
Q 005352 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (701)
Q Consensus 206 ~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~ 285 (701)
-++++..+++++.|+..|.+.+|...... .... ...+-.+.+..+..+++..++|.|+..|.|.++.++....
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~--~~~~----~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p- 110 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGE--MRKL----KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP- 110 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchh--hhcc----cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-
Confidence 36778888999999999999999754321 1111 1222456677788899988899999999999998876431
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
+..+++.. .-+.|+..|++++|+++
T Consensus 111 ---------~~~~~~t~----------------------------------------------~d~~~~~rVTal~Ws~~ 135 (726)
T KOG3621|consen 111 ---------RDLDYVTP----------------------------------------------CDKSHKCRVTALEWSKN 135 (726)
T ss_pred ---------Ccceeecc----------------------------------------------ccccCCceEEEEEeccc
Confidence 11111110 00238899999999999
Q ss_pred C-eEEEEECCCcEEEEECCCC-----eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC
Q 005352 366 N-YLLSASIDKTVRLWRVGND-----HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 366 ~-~l~s~s~dg~I~iWd~~~~-----~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~ 427 (701)
+ .+++|...|+|.+-.+.+. .....+...+.|-.+... ...+|++...- -.++++..+
T Consensus 136 ~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~r--~~Lc~tE~e 199 (726)
T KOG3621|consen 136 GMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLTR--CILCQTEAE 199 (726)
T ss_pred ccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhhh--hheeecchh
Confidence 9 9999999999999888772 111222356778777775 34444444332 334555443
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0017 Score=71.81 Aligned_cols=197 Identities=15% Similarity=0.137 Sum_probs=125.4
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCC-eEEEEEeeCCCCEEEEEEcCC-----cEEEEeCCCC
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNY-VTCVHFNPVDDNYFISGSIDG-----KVRIWAVLSC 427 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~-V~~l~f~p~~~~~l~sgs~dg-----~v~iwd~~~~ 427 (701)
.|.+ |++++ .++.|+.+|.|.+.+- +.+.+..|+ +... |+.+.... ..++|++.+.|+ .|+||++...
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEeccccc
Confidence 4443 46666 9999999999888873 333334444 3333 55554433 446888877765 4899998642
Q ss_pred ------cEE---EEec-----CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEE
Q 005352 428 ------HVV---DWVD-----IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 428 ------~~~---~~~~-----~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 493 (701)
+++ .... ...++.+++.+.+-+.+++|-.+|.|..|.-+-.+- ..... ........+|+++.
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD---rgsr~-~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD---RGSRQ-DYSHRGKEPITGLA 178 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc---cccce-eeeccCCCCceeeE
Confidence 233 2232 246788999999999999999999999886331111 00000 01223447899999
Q ss_pred EecCCCCEEEEEECCCcEEEEeCCccceeee-cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 494 FLPQDSSKVMVSCADSQVRILQGPNVIGKYK-GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 494 ~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+.. ++..++.......|.+|.+........ ...+..++.|.++++....+++|+ +..+++|+.....
T Consensus 179 ~~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 179 LRS-DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred Eec-CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence 988 455534444556788888764332333 334677888888887665455554 3579999977544
No 335
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.66 E-value=0.013 Score=62.28 Aligned_cols=204 Identities=15% Similarity=0.206 Sum_probs=118.7
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeee-------------------------------------------eee
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCL-------------------------------------------RVF 391 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~-------------------------------------------~~~ 391 (701)
.|+.+.+.++. .|+.+...|.|.||.....+.- ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57888999887 9999999999988865321110 001
Q ss_pred c-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC---------CCcEEEEEEee-----CC---CeEEE
Q 005352 392 P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI---------RQIVTAVCYRP-----DG---QGGIV 453 (701)
Q Consensus 392 ~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~---------~~~i~~i~~sp-----~g---~~l~~ 453 (701)
. ..++|++++.+ +-.+++.|+.+|.+.|.|+|...++..... ...++++.|.. |+ -.+++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 1 46789999987 567999999999999999998887744322 23588888874 22 46899
Q ss_pred EecCCcEEEEECCC-CeeeeeeeEEeecccCCCCCCeeEEEEe-cC-------------------CCCEEEEEECCCcEE
Q 005352 454 GSMMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFL-PQ-------------------DSSKVMVSCADSQVR 512 (701)
Q Consensus 454 gs~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~-p~-------------------~~~~l~~~s~dg~I~ 512 (701)
|+..|.+.+|.+.- ..-.....+.... ..+..+|..+... .+ .-.-+++...+..++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~--~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGAT--TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeecc--ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 99999999998752 1111111111111 2233444444322 11 112355666688999
Q ss_pred EEeCCccceeeecccCCCCeEEEEEe-----cCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 513 ILQGPNVIGKYKGLRRSGNQLSACFT-----SDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~v~~l~~s-----~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
++...+.+...+..........+++- ..+..|++-..+|.|++|.+-.-++
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 99988766655554222233344452 3567888889999999999877653
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.0016 Score=71.50 Aligned_cols=268 Identities=13% Similarity=0.088 Sum_probs=145.8
Q ss_pred eeeecCccccccc----cccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC
Q 005352 207 ERVRLNEEDAMFC----SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (701)
Q Consensus 207 ~~~~~~~~~~~~~----~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~ 282 (701)
.+.++....++++ ...|.|.||--.. +.. ...++.-| +++++|+|..-.||.|-.-|.+.+|...+.
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtG---EPq---r~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTG---EPQ---RDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCC---CCC---ccccccee---hhhhccChHHHHHhhccccceeEEEecCCc
Confidence 3444555555443 3567888885211 111 11122223 456999999888999999999999997664
Q ss_pred eeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEE
Q 005352 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (701)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 362 (701)
+. ......|+.+|..+.|
T Consensus 92 e~--------------------------------------------------------------htv~~th~a~i~~l~w 109 (1416)
T KOG3617|consen 92 ET--------------------------------------------------------------HTVVETHPAPIQGLDW 109 (1416)
T ss_pred ee--------------------------------------------------------------eeeccCCCCCceeEEe
Confidence 31 1122459999999999
Q ss_pred ecCC-eEEEEECCCcEEEEECCCCeeeee---ecC--CCCeEEEE------------------------------E----
Q 005352 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRV---FPH--SNYVTCVH------------------------------F---- 402 (701)
Q Consensus 363 s~~~-~l~s~s~dg~I~iWd~~~~~~~~~---~~h--~~~V~~l~------------------------------f---- 402 (701)
|++| .++|+..-|.|.+|....-..++. ++| ...++-++ |
T Consensus 110 S~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~ 189 (1416)
T KOG3617|consen 110 SHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESL 189 (1416)
T ss_pred cCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccch
Confidence 9999 999999999999997652211111 111 01111111 1
Q ss_pred ---------eeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC-Ceeee
Q 005352 403 ---------NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD-NHLEL 472 (701)
Q Consensus 403 ---------~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~-~~~~~ 472 (701)
.| ++..|+.++.+|+|+-.|-. ++........+.| .+-|.+....+++-..+-++.+|-+.. +....
T Consensus 190 a~rs~~ksgv~-~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS~v-QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee 266 (1416)
T KOG3617|consen 190 AERSDEKSGVP-KGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDSEV-QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEE 266 (1416)
T ss_pred hhccccccCCC-CCcEEEEEcCCceEEEEcCC-CcEEEEEEccchH-HHHHhcccceEEEEeeeceeeEEEecCCCchHH
Confidence 12 56677778888888777643 3333222222211 122222222233322222222222211 10000
Q ss_pred eeeEEe-----------------------ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC-cc------cee
Q 005352 473 DAEICV-----------------------HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-NV------IGK 522 (701)
Q Consensus 473 ~~~~~~-----------------------~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~-~~------~~~ 522 (701)
.-...+ ..........+++++++. .+..+..|...|.+.+|--. .. +..
T Consensus 267 ~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~-~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~ 345 (1416)
T KOG3617|consen 267 RCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGE-KEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDV 345 (1416)
T ss_pred hhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEec-cceEEEecccCCcEEEeeecCccccCCCCcce
Confidence 000000 000112345789999998 67889999999999999532 11 111
Q ss_pred eec---ccCCCCeEEEEEecCCCEEEEEeC
Q 005352 523 YKG---LRRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 523 ~~~---~~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
... ....+.|..+.|.|-...++.-+.
T Consensus 346 w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~ 375 (1416)
T KOG3617|consen 346 WTLNGKRESLGKISLIRWGPIKSTAAVNTE 375 (1416)
T ss_pred EEecCchhhccceEEEEeccccchhhhhhh
Confidence 111 124567899999886655555443
No 337
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.63 E-value=0.031 Score=56.84 Aligned_cols=194 Identities=11% Similarity=0.109 Sum_probs=107.5
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeee---------------eecCCCCeEEEE-EeeCCCCEEEEEEcCCc
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR---------------VFPHSNYVTCVH-FNPVDDNYFISGSIDGK 418 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~---------------~~~h~~~V~~l~-f~p~~~~~l~sgs~dg~ 418 (701)
.|..+...++- .|++- .|+.+.++++..-.... .+.....+...+ -....+...+.......
T Consensus 37 ~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~ 115 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK 115 (275)
T ss_pred eEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence 38888888875 44333 35999999987654443 222334455444 11213444444455668
Q ss_pred EEEEeCCCC-----cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec----ccCCCCCCe
Q 005352 419 VRIWAVLSC-----HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS----KKKAPCKRI 489 (701)
Q Consensus 419 v~iwd~~~~-----~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~----~~~~~~~~i 489 (701)
|.+|..... +....+.....+..++|. ++.+++|.. ....+.|+.++....-....... .......++
T Consensus 116 i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 192 (275)
T PF00780_consen 116 ILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPL 192 (275)
T ss_pred EEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCce
Confidence 988877653 344566778899999998 557888775 44888899865543211100000 011122333
Q ss_pred eEEEEecCCCCEEEEEECCCcEEEEeCCcc-c--eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 490 TGFQFLPQDSSKVMVSCADSQVRILQGPNV-I--GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~-~--~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
..+... ++.+|++ . +..-.+.|.... . ..+.. ...+.++++ ...||+..+.+ .|.||++.+++.
T Consensus 193 ~~~~~~--~~e~Ll~-~-~~~g~fv~~~G~~~r~~~i~W---~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~l 259 (275)
T PF00780_consen 193 GIFQLS--DNEFLLC-Y-DNIGVFVNKNGEPSRKSTIQW---SSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGEL 259 (275)
T ss_pred EEEEeC--CceEEEE-e-cceEEEEcCCCCcCcccEEEc---CCchhEEEE--ECCEEEEECCC-EEEEEECcCCcE
Confidence 333433 2345543 2 333333343321 1 11221 234556666 34588887765 499999999974
No 338
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.50 E-value=0.022 Score=59.52 Aligned_cols=170 Identities=10% Similarity=0.144 Sum_probs=102.6
Q ss_pred CcEEEEECCCC-----e--eeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc-EEEEecCCC--cEEEEEE
Q 005352 375 KTVRLWRVGND-----H--CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVDWVDIRQ--IVTAVCY 444 (701)
Q Consensus 375 g~I~iWd~~~~-----~--~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~--~i~~i~~ 444 (701)
|.|.++++... + .+......++|++++-- ++ .|+++. ++.|.+|++...+ ......... .++++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999884 2 22333478899999865 34 455544 6889999998887 664444333 4555544
Q ss_pred eeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc-----
Q 005352 445 RPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV----- 519 (701)
Q Consensus 445 sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~----- 519 (701)
.++++++|.....+.++..+.....+ .... .......++++.+.+++ +.++++..+|.+.++.....
T Consensus 138 --~~~~I~vgD~~~sv~~~~~~~~~~~l----~~va-~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~ 209 (321)
T PF03178_consen 138 --FKNYILVGDAMKSVSLLRYDEENNKL----ILVA-RDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSR 209 (321)
T ss_dssp --ETTEEEEEESSSSEEEEEEETTTE-E----EEEE-EESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTT
T ss_pred --cccEEEEEEcccCEEEEEEEccCCEE----EEEE-ecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccc
Confidence 46699999998999888655422111 1111 12234568899999744 69999999999999876421
Q ss_pred -----ceeeecccCCCCeEEE---EEec--CCC------EEEEEeCCCcEEEE
Q 005352 520 -----IGKYKGLRRSGNQLSA---CFTS--DGK------HIVSAGEDSNVYMW 556 (701)
Q Consensus 520 -----~~~~~~~~~~~~v~~l---~~s~--dg~------~l~sgs~Dg~I~iW 556 (701)
............|+++ ++.| .+. .++-++.+|.|.+.
T Consensus 210 ~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 210 DGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 1111112244567777 4445 222 47888889998854
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.50 E-value=0.00082 Score=72.65 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=84.7
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV- 430 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~- 430 (701)
..|.--++...+ +++.|+.-|.+++|+-..++....-. ..+.+..+..++ +..++|.|+..|.|.++-+.....-
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCc
Confidence 344444455555 99999999999999987776554333 344555667777 8888999999999999988764321
Q ss_pred --EE----ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC
Q 005352 431 --DW----VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (701)
Q Consensus 431 --~~----~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~ 467 (701)
.. ..|...|++++|++++..+++|...|+|.+-.+..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11 12567899999999999999999999999888876
No 340
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.41 E-value=0.012 Score=63.24 Aligned_cols=190 Identities=14% Similarity=0.171 Sum_probs=115.1
Q ss_pred EEEcCCccCeEEEEEecCC-eEEEE---ECC-CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEE-EEcCCc--E
Q 005352 348 HEFHGHSGEILDLSWSKNN-YLLSA---SID-KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS-GSIDGK--V 419 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~-~l~s~---s~d-g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~s-gs~dg~--v 419 (701)
..+..-...+..-+|+|++ .++.. ... ..+.++++.+++........+.-..-+|+| +++.|+. ...||. |
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~i 264 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCccE
Confidence 3344445567777899988 32221 222 459999999998877777666667788999 7776654 445665 6
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEec-CCc--EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 420 RIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MGD--CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 420 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
.++|+.+++...+....+.-+.-.|+|||+.++-.+. .|. |.+++........ +.... ..-..-.|+|
T Consensus 265 y~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r---iT~~~------~~~~~p~~Sp 335 (425)
T COG0823 265 YLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR---LTFSG------GGNSNPVWSP 335 (425)
T ss_pred EEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE---eeccC------CCCcCccCCC
Confidence 6678888876665555555557789999998877654 444 6666666554311 11111 1111556788
Q ss_pred CCCCEEEEEEC-CCc--EEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeC
Q 005352 497 QDSSKVMVSCA-DSQ--VRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 497 ~~~~~l~~~s~-dg~--I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
++.+++..+. +|. |.+.|..+... ............-+|.++|+.|+..+.
T Consensus 336 -dG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 336 -DGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred -CCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 5666655553 455 55555543332 222223344455677888887765543
No 341
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.37 E-value=0.049 Score=56.82 Aligned_cols=173 Identities=17% Similarity=0.227 Sum_probs=111.8
Q ss_pred CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCC------CCEEEEEEc----------CCcEEEEeCCCC-----c--E
Q 005352 375 KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVD------DNYFISGSI----------DGKVRIWAVLSC-----H--V 429 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~------~~~l~sgs~----------dg~v~iwd~~~~-----~--~ 429 (701)
..|++.|..+.+.+..+. ....+++++..... ..+|+.|.. .|.|.++++... + .
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 358889988888777665 44556665544312 467777653 288999999884 2 2
Q ss_pred EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCe-eeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH-LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 430 ~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
+.....+++|++++-- ++ .|+++. .+.|.+|++...+ +....... ....++++.... +++++|...
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~-------~~~~i~sl~~~~---~~I~vgD~~ 148 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYD-------SPFYITSLSVFK---NYILVGDAM 148 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE--------BSSSEEEEEEET---TEEEEEESS
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheec-------ceEEEEEEeccc---cEEEEEEcc
Confidence 2445668899999876 34 444444 4899999999887 43222111 112567776654 699999998
Q ss_pred CcEEEEeCCccce---eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 509 SQVRILQGPNVIG---KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 509 g~I~iwd~~~~~~---~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
..+.++....... ..........++++.|-++++.++.+..+|.+.++....
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 8888874332111 122222455688999987778999999999999999864
No 342
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.35 E-value=0.017 Score=48.52 Aligned_cols=99 Identities=19% Similarity=0.241 Sum_probs=71.3
Q ss_pred eEEEEEec---CC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 357 ILDLSWSK---NN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 357 I~~l~~s~---~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
|++|++.. +| .|+.|+.|..|++|+ ..+.+..+.....|++++-.. ...|+.+..+|+|-+|+-... .-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~R-lWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQR-LWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcce-eee
Confidence 55666554 44 899999999999996 457788888889999998775 578999999999999976322 222
Q ss_pred EecCCCcEEEEEEee-CC---CeEEEEecCCcEE
Q 005352 432 WVDIRQIVTAVCYRP-DG---QGGIVGSMMGDCR 461 (701)
Q Consensus 432 ~~~~~~~i~~i~~sp-~g---~~l~~gs~dg~v~ 461 (701)
. ..+..++++++.. ++ ..|++|-.+|.|-
T Consensus 77 i-KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 I-KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred e-ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 2334466665543 33 3688888888764
No 343
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.29 E-value=0.051 Score=58.55 Aligned_cols=175 Identities=13% Similarity=0.141 Sum_probs=94.5
Q ss_pred cEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---CCCc-----EEEEEEee
Q 005352 376 TVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---IRQI-----VTAVCYRP 446 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---~~~~-----i~~i~~sp 446 (701)
.|.||+. .|+.+..+. ..+.+.++.|.. + ..|+....||.+++||+.... ....+ .... +..+.+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence 5888886 455566554 338999999986 4 456666789999999997443 11111 1111 22223332
Q ss_pred CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC--CCCCCeeE-EEEecCCCCEEEEEECCCcEEEEeCCccceee
Q 005352 447 DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK--APCKRITG-FQFLPQDSSKVMVSCADSQVRILQGPNVIGKY 523 (701)
Q Consensus 447 ~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~~~~i~~-l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~ 523 (701)
+| +++-+.++.+.+..--................. ........ ..+.. +....+....++.+.+.+......
T Consensus 138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccc--
Confidence 44 455455565544432222111110000111000 00111111 22333 344555555666777555433211
Q ss_pred ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 524 KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 524 ~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
....+++..+++||+|++||.-..+|.+.+...+-.
T Consensus 213 --i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 213 --IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred --ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 223468999999999999999999999999875433
No 344
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.26 E-value=0.14 Score=56.83 Aligned_cols=176 Identities=11% Similarity=0.125 Sum_probs=100.5
Q ss_pred CCCcEEEEECCCCeeeeeecCC-CC--------------------e-EEEEEeeCCCCEEEEEEcCC-------------
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHS-NY--------------------V-TCVHFNPVDDNYFISGSIDG------------- 417 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~-~~--------------------V-~~l~f~p~~~~~l~sgs~dg------------- 417 (701)
.++.|..+|..+++.+..+... .. + ...++.+ .+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~ 251 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGD 251 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCC
Confidence 4678888899888888776521 10 0 1233444 456777776665
Q ss_pred -----cEEEEeCCCCcEEEEecCC-CcE------EEEEEe----eCCC---eEEEEecCCcEEEEECCCCeeeeeeeEEe
Q 005352 418 -----KVRIWAVLSCHVVDWVDIR-QIV------TAVCYR----PDGQ---GGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (701)
Q Consensus 418 -----~v~iwd~~~~~~~~~~~~~-~~i------~~i~~s----p~g~---~l~~gs~dg~v~i~d~~~~~~~~~~~~~~ 478 (701)
.|.-+|..+++.+-..... ... ....+. -++. .+++++.+|.+..+|..+++.........
T Consensus 252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~ 331 (488)
T cd00216 252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE 331 (488)
T ss_pred CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec
Confidence 6889999999877333211 101 111111 1333 57888899999999999998876544321
Q ss_pred ecccCCCCCCeeEEEEecCCCCEEEE------------------EECCCcEEEEeCCccceeeecccCC--------CCe
Q 005352 479 HSKKKAPCKRITGFQFLPQDSSKVMV------------------SCADSQVRILQGPNVIGKYKGLRRS--------GNQ 532 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~~~~~l~~------------------~s~dg~I~iwd~~~~~~~~~~~~~~--------~~v 532 (701)
.. +...| ..+++ ...++.|.-+|..+.....+..... .+.
T Consensus 332 ~~-----------~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 332 QP-----------MAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred cc-----------cccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcc
Confidence 11 11111 11111 1234566666666554444332110 111
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 533 LSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 533 ~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
..-.....+.+|+.++.||.|+.+|.++++.
T Consensus 398 ~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 398 WGGSLATAGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred cCcceEecCCeEEEECCCCeEEEEECCCCce
Confidence 1111123567899999999999999999874
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.18 E-value=0.0076 Score=68.51 Aligned_cols=148 Identities=14% Similarity=0.132 Sum_probs=98.0
Q ss_pred CCCEEEEE-EcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeC-------CCeEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 406 DDNYFISG-SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD-------GQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 406 ~~~~l~sg-s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~-------g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
+.++|+.- .....|+-.|+..|+++........+.-..+.|+ ....++|-.+..+..||.+-....+ ..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~---v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL---VD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce---ee
Confidence 34444443 3457899999999999965555444444555564 3356778888999999998643111 11
Q ss_pred eecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 478 ~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
...+........+|++-. ...+|++|+.+|.||+||--....+-...+-..+|..+..+.||++|+..+ +..|.+++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred ccccccccCCCceEEEec--CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 111122334556666655 468999999999999999533222222233578999999999999998776 56788887
Q ss_pred CC
Q 005352 558 CI 559 (701)
Q Consensus 558 ~~ 559 (701)
..
T Consensus 646 t~ 647 (794)
T PF08553_consen 646 TL 647 (794)
T ss_pred Ee
Confidence 53
No 346
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.13 Score=55.03 Aligned_cols=199 Identities=14% Similarity=0.137 Sum_probs=135.9
Q ss_pred EEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEc---CCcEEEEeCCCCcEEEE
Q 005352 358 LDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI---DGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 358 ~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~---dg~v~iwd~~~~~~~~~ 432 (701)
..++.++.+ .+++...+..|.+.|..+........-......++++| +++.+..+.. ++.+.+.|..+.+....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 456677776 44555557899999988888888877555788999999 6666555544 68899999998888866
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-C--
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-D-- 508 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-d-- 508 (701)
.........+++.|+|+.+++.. .++.+.+.|........ .. .............+.+.| ++..+.+... +
T Consensus 156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~ 230 (381)
T COG3391 156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---VGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGS 230 (381)
T ss_pred EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---cccccccCCCCceEEECC-CCCEEEEEeccCCC
Confidence 55443448999999999777765 68899999977665431 10 000112223446688888 5554444433 3
Q ss_pred CcEEEEeCCccceeeecccCCC-CeEEEEEecCCCEEEEEeCC-CcEEEEeCCCCC
Q 005352 509 SQVRILQGPNVIGKYKGLRRSG-NQLSACFTSDGKHIVSAGED-SNVYMWNCIGHE 562 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~~~~-~v~~l~~s~dg~~l~sgs~D-g~I~iWd~~~~~ 562 (701)
+.+...|............... ....+.++|+|.++.+.... +.+.+-|..+..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 5888888876444333111111 56678899999999888444 788888877655
No 347
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.13 E-value=0.022 Score=47.88 Aligned_cols=103 Identities=18% Similarity=0.259 Sum_probs=73.3
Q ss_pred eEEEEEeeCCC---CEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee
Q 005352 397 VTCVHFNPVDD---NYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (701)
Q Consensus 397 V~~l~f~p~~~---~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~ 473 (701)
|+++++...++ +.|++|+.|..||+|+- ..++......+.|++++-... ..++.+..+|+|-+|+-.......
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRi- 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRI- 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeee-
Confidence 66777765433 68999999999999964 466777777888999888776 568889999999999875433221
Q ss_pred eeEEeecccCCCCCCeeEEEEecC---CCCEEEEEECCCcEEE
Q 005352 474 AEICVHSKKKAPCKRITGFQFLPQ---DSSKVMVSCADSQVRI 513 (701)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~l~~~p~---~~~~l~~~s~dg~I~i 513 (701)
.....++++++..- ....|++|-.+|.|-+
T Consensus 78 ----------KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 78 ----------KSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ----------ccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 12234666666542 2347888888888743
No 348
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.10 E-value=0.00087 Score=44.03 Aligned_cols=34 Identities=50% Similarity=1.096 Sum_probs=31.1
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.+.+|...|.++.|.+++.++++++.|+.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4567999999999999999999999999999996
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.05 E-value=0.14 Score=54.29 Aligned_cols=198 Identities=16% Similarity=0.164 Sum_probs=106.7
Q ss_pred ccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecC------------------CCCeEEEEEeeCCCCEEEEEE
Q 005352 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPH------------------SNYVTCVHFNPVDDNYFISGS 414 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h------------------~~~V~~l~f~p~~~~~l~sgs 414 (701)
...+....|+|+| .++-. .++.|.++++.++...+.-.. -+.-..+-|+| ++++|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEE
T ss_pred ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEE
Confidence 4567888999999 44444 467899999887754433221 12235678999 888888764
Q ss_pred cC-Cc-----------------------------------EEEEeCCCCcEEE--Ee----cCCCcEEEEEEeeCCCeEE
Q 005352 415 ID-GK-----------------------------------VRIWAVLSCHVVD--WV----DIRQIVTAVCYRPDGQGGI 452 (701)
Q Consensus 415 ~d-g~-----------------------------------v~iwd~~~~~~~~--~~----~~~~~i~~i~~sp~g~~l~ 452 (701)
.| .. +.|+|+.+++... .. ....-+..+.|.++++.|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 43 11 3334444444321 11 1234588899999998555
Q ss_pred EEecC-----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe-cCCCCEEEEEECCCcEEEE--eCCccceeee
Q 005352 453 VGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL-PQDSSKVMVSCADSQVRIL--QGPNVIGKYK 524 (701)
Q Consensus 453 ~gs~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-p~~~~~l~~~s~dg~I~iw--d~~~~~~~~~ 524 (701)
+.-.+ -.+.++|..++......... ...-......+.+. +++..++.....+|.-+|| +....... .
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~----~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~ 274 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEET----SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-Q 274 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEE----SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-E
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEec----CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-c
Confidence 54332 23667787765543322111 11112233455555 6566777777778766665 44433322 2
Q ss_pred cccCCCCeEE-EEEecCCCEEE-EEeCC--CcEEEEeC
Q 005352 525 GLRRSGNQLS-ACFTSDGKHIV-SAGED--SNVYMWNC 558 (701)
Q Consensus 525 ~~~~~~~v~~-l~~s~dg~~l~-sgs~D--g~I~iWd~ 558 (701)
.....-.|.. +.++++++.|+ +|..+ +.-.||.+
T Consensus 275 lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 275 LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 2224455644 67888877654 55542 23444443
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.03 E-value=0.25 Score=48.87 Aligned_cols=199 Identities=14% Similarity=0.160 Sum_probs=97.7
Q ss_pred eeccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCeeeeeecCCC-CCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 245 EIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPE-IDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+.+-...+..|.|.|+.. ++++....+.|...+. +++.+..+.+.. .+...+.+..+. ...+.-...
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~---~~vl~~Er~------ 85 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG---RYVLSEERD------ 85 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT---EEEEEETTT------
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC---EEEEEEcCC------
Confidence 4555566799999999755 5566667777777775 467777776543 222222222111 011111111
Q ss_pred EeeecCCccEEEcCC--ccccccCCCeEEE-----cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCC---Ceeeeee
Q 005352 323 SLRRTSESACVVFPP--KVFRILEKPLHEF-----HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN---DHCLRVF 391 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~---~~~~~~~ 391 (701)
..+..+.. ..-.+.......+ ..+...+-.|+|.+.+ .|+.+-...-..||.+.. ...+...
T Consensus 86 -------~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 86 -------QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp -------TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred -------CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence 11111111 0000000001111 2355678999999986 666677776677776653 2222111
Q ss_pred c---------CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCC----------cEEEEEEeeCCCeEE
Q 005352 392 P---------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ----------IVTAVCYRPDGQGGI 452 (701)
Q Consensus 392 ~---------h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~----------~i~~i~~sp~g~~l~ 452 (701)
. ....+.+++++|..+++++.......|.++| .+++++....... ..-.|+|.++|+..+
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1 3456889999997788888888888999999 6677665544332 578899999986555
Q ss_pred EEecCCcEEE
Q 005352 453 VGSMMGDCRF 462 (701)
Q Consensus 453 ~gs~dg~v~i 462 (701)
++ .-+..++
T Consensus 238 vs-EpNlfy~ 246 (248)
T PF06977_consen 238 VS-EPNLFYR 246 (248)
T ss_dssp EE-TTTEEEE
T ss_pred Ec-CCceEEE
Confidence 44 4444443
No 351
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.98 E-value=0.12 Score=49.72 Aligned_cols=139 Identities=14% Similarity=0.067 Sum_probs=92.2
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
...+++.|+..+.+.--|..++.++-.......|.+-+.- -|++++.|...|.+++.+..++.........
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-------- 92 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-------- 92 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh--------
Confidence 4567888888999999999999877544444555444333 4678999999999999999998665443322
Q ss_pred CCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
..|.+-+....++.++.+|+.|+..+..|.++....++..-..+...+-++.|-...|..+...|.+.
T Consensus 93 -~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 93 -ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred -hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence 11222222223789999999999999999998888877644444444445555222333333344443
No 352
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0035 Score=67.10 Aligned_cols=91 Identities=15% Similarity=0.249 Sum_probs=77.9
Q ss_pred ccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeE-EEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVT-CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~-~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
...|.-+.|+|.- .+|++..+|.|.+..+. .+.+.++. +...++ +++|.| ||+.|+.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3567889999987 99999999999999988 77888888 777777 999999 9999999999999999999998877
Q ss_pred EE--ecCCCcEEEEEEee
Q 005352 431 DW--VDIRQIVTAVCYRP 446 (701)
Q Consensus 431 ~~--~~~~~~i~~i~~sp 446 (701)
.. ......|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 55 44566788887764
No 353
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.89 E-value=0.54 Score=49.46 Aligned_cols=185 Identities=18% Similarity=0.222 Sum_probs=89.3
Q ss_pred ecCC-eEEEEE--CC----CcEEEEECCCCeeeeeec----CCCCeEEEEEeeCCCCEEEEEEc----------------
Q 005352 363 SKNN-YLLSAS--ID----KTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSI---------------- 415 (701)
Q Consensus 363 s~~~-~l~s~s--~d----g~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~~~~~l~sgs~---------------- 415 (701)
-|+| .++++- .+ |-+.+.|-++.+...... ....-..+-|.| ..+.++|...
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhh
Confidence 3566 555542 22 457888888777776665 234566788888 7788887642
Q ss_pred ----CCcEEEEeCCCCcEEEEecCC---CcEEEEEEeeC--CCeEEEEe-cCCcE-EEEECCCCeeeeeeeEEeecccCC
Q 005352 416 ----DGKVRIWAVLSCHVVDWVDIR---QIVTAVCYRPD--GQGGIVGS-MMGDC-RFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 416 ----dg~v~iwd~~~~~~~~~~~~~---~~i~~i~~sp~--g~~l~~gs-~dg~v-~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
..++.+||+.+.+.++.+... ..+..|.|..+ ..+-++|+ ...+| ++|....+....+..+.+......
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 367999999999999888765 34667777553 44444433 34444 445546666665555554432211
Q ss_pred -------------CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcccee-eec------------------ccCCCCe
Q 005352 485 -------------PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK-YKG------------------LRRSGNQ 532 (701)
Q Consensus 485 -------------~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~-~~~------------------~~~~~~v 532 (701)
...-|+.|.++.++.-+.++.-..|.|+.||+.+.... +.+ ..-.+..
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 12457999999954444444455999999998753221 111 0112234
Q ss_pred EEEEEecCCCEEEEEe
Q 005352 533 LSACFTSDGKHIVSAG 548 (701)
Q Consensus 533 ~~l~~s~dg~~l~sgs 548 (701)
.-+..|-||+.|...+
T Consensus 377 qMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 377 QMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --EEE-TTSSEEEEE-
T ss_pred CeEEEccCCeEEEEEe
Confidence 6677888888776653
No 354
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.88 E-value=0.061 Score=59.21 Aligned_cols=135 Identities=13% Similarity=0.074 Sum_probs=87.1
Q ss_pred CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecC--------------------------------------
Q 005352 416 DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM-------------------------------------- 457 (701)
Q Consensus 416 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d-------------------------------------- 457 (701)
.+.+.+.|..+.++............+.++|+|+++++.+.+
T Consensus 214 ~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V 293 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI 293 (635)
T ss_pred eEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE
Confidence 355777788777766555555566778888888888887521
Q ss_pred --CcEEEEECCC----C-eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCccceeee-----
Q 005352 458 --GDCRFYNVSD----N-HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVIGKYK----- 524 (701)
Q Consensus 458 --g~v~i~d~~~----~-~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~~~~~~----- 524 (701)
+.|.+.|..+ + .... ...-.....++.++| +++++++++ .+.+|.|+|+.+....+.
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~---------yIPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTR---------YVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred CCCEEEEEECCccccCCcceEE---------EEECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 2244444433 1 1100 011224567889999 566555554 599999999886553221
Q ss_pred ------cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 525 ------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 525 ------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
...-.......+|+++|....|---|..|..||+..
T Consensus 364 ~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 364 RDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 111233445778999999888889999999999876
No 355
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.37 Score=49.41 Aligned_cols=177 Identities=14% Similarity=0.128 Sum_probs=96.9
Q ss_pred ecCCeEEEEECCCcEEEEECCCCeeeeeec------CCCCeEEEEEeeCCCCEEEEEEc-----------CCcEEEEeCC
Q 005352 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFISGSI-----------DGKVRIWAVL 425 (701)
Q Consensus 363 s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~------h~~~V~~l~f~p~~~~~l~sgs~-----------dg~v~iwd~~ 425 (701)
...+.|+++... +.+++..++..+..+. .....+.+...| ++.+.++... -|.|+.+|.
T Consensus 75 d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p- 150 (307)
T COG3386 75 DAGGRLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP- 150 (307)
T ss_pred cCCCeEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-
Confidence 334466655443 5666666555533332 235567788888 7776554333 133444444
Q ss_pred CCcEEEEec-CCCcEEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeee-EEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 426 SCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAE-ICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 426 ~~~~~~~~~-~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
.+..+.... +-...+.|+|+||++.|+.+.. .+.|+-|++.......... .... ........-+++... ++.+.
T Consensus 151 ~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~--~~~~~G~PDG~~vDa-dG~lw 227 (307)
T COG3386 151 DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD--FDEEPGLPDGMAVDA-DGNLW 227 (307)
T ss_pred CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE--ccCCCCCCCceEEeC-CCCEE
Confidence 455554443 3556788999999988877755 4788888876311111111 0111 111234445566655 55555
Q ss_pred EEEECCC-cEEEEeCC-ccceeeecccCCCCeEEEEEe-cCCCEEEEEe
Q 005352 503 MVSCADS-QVRILQGP-NVIGKYKGLRRSGNQLSACFT-SDGKHIVSAG 548 (701)
Q Consensus 503 ~~~s~dg-~I~iwd~~-~~~~~~~~~~~~~~v~~l~~s-~dg~~l~sgs 548 (701)
+++..+| .|.+|+.. .....+.. ....+++++|- ++.+.|+..+
T Consensus 228 ~~a~~~g~~v~~~~pdG~l~~~i~l--P~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 228 VAAVWGGGRVVRFNPDGKLLGEIKL--PVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EecccCCceEEEECCCCcEEEEEEC--CCCCCccceEeCCCcCEEEEEe
Confidence 4444443 89999877 23333333 44677888885 3445554433
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.86 E-value=0.64 Score=50.11 Aligned_cols=81 Identities=10% Similarity=-0.043 Sum_probs=49.4
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
+....+....++.+.+.+-...+. ....+++..|+++|+|++++.-..+|.+.+....-.+...+.... .
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-------~ 258 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-------S 258 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC-------c
Confidence 444455555555565444322211 333568999999999999999999999998876544433322211 2
Q ss_pred CCCeeEEEEec
Q 005352 486 CKRITGFQFLP 496 (701)
Q Consensus 486 ~~~i~~l~~~p 496 (701)
......+.|+-
T Consensus 259 ~~~p~~~~WCG 269 (410)
T PF04841_consen 259 KSPPKQMAWCG 269 (410)
T ss_pred CCCCcEEEEEC
Confidence 23445667765
No 357
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.79 E-value=1.1 Score=48.62 Aligned_cols=198 Identities=13% Similarity=0.101 Sum_probs=100.7
Q ss_pred EEEEecCC-eE-EEEECC----------CcEEEEECCCCeee--eeec--CCCC-eEEEEEeeCCCCEEEEEEcC----C
Q 005352 359 DLSWSKNN-YL-LSASID----------KTVRLWRVGNDHCL--RVFP--HSNY-VTCVHFNPVDDNYFISGSID----G 417 (701)
Q Consensus 359 ~l~~s~~~-~l-~s~s~d----------g~I~iWd~~~~~~~--~~~~--h~~~-V~~l~f~p~~~~~l~sgs~d----g 417 (701)
.+.|.+++ .| ++...+ ..|+.|.+.+...- ..|. .... ...+..++ ++++|+..... .
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s 252 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSES 252 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCC
Confidence 38999987 44 443222 23788888776432 3443 3333 66788888 88887754433 3
Q ss_pred cEEEEeCCCC-----cEEEEecCCCcEEEEEEeeCCCeEEEEe---cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCe
Q 005352 418 KVRIWAVLSC-----HVVDWVDIRQIVTAVCYRPDGQGGIVGS---MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (701)
Q Consensus 418 ~v~iwd~~~~-----~~~~~~~~~~~i~~i~~sp~g~~l~~gs---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i 489 (701)
.+.+.++..+ ....+......+....-+..+.+++... ..+.|...++............+. ......+
T Consensus 253 ~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l 329 (414)
T PF02897_consen 253 EVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSL 329 (414)
T ss_dssp EEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEE
T ss_pred eEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcC---CCCceeE
Confidence 4788888774 3444444444444333333444444332 245677777776542110101111 0111235
Q ss_pred eEEEEecCCCCEEEEEECCC--cEEEEeCC-ccceeeecccCCCCeEEEEEecCCCEEE-EE-e--CCCcEEEEeCCCCC
Q 005352 490 TGFQFLPQDSSKVMVSCADS--QVRILQGP-NVIGKYKGLRRSGNQLSACFTSDGKHIV-SA-G--EDSNVYMWNCIGHE 562 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~dg--~I~iwd~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~-sg-s--~Dg~I~iWd~~~~~ 562 (701)
..+... ...+++....++ .|++++.. ............+.|..+...+++..+. +- | .-++++.||+.+++
T Consensus 330 ~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 330 EDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEEE--TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEEEEE--CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 555543 344555555544 57778888 4333332222445566666556555443 22 2 24679999998887
No 358
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.76 E-value=0.33 Score=53.76 Aligned_cols=155 Identities=12% Similarity=0.140 Sum_probs=94.8
Q ss_pred CeEEEEECCCcEEEEECCCCeeeeeecCCCC------eE-EEEEeeCCCCEEEEEE---------cCCcEEEEeCCCCcE
Q 005352 366 NYLLSASIDKTVRLWRVGNDHCLRVFPHSNY------VT-CVHFNPVDDNYFISGS---------IDGKVRIWAVLSCHV 429 (701)
Q Consensus 366 ~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~------V~-~l~f~p~~~~~l~sgs---------~dg~v~iwd~~~~~~ 429 (701)
+.++.++.++.|.-+|.++++.+..+..... +. ...+. +..++.++ .++.|..+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 5788888999999999999999988864332 11 11222 24455554 367899999999987
Q ss_pred EEEecCC-C--------------------cE-EEEEEeeCCCeEEEEecCC------------------cEEEEECCCCe
Q 005352 430 VDWVDIR-Q--------------------IV-TAVCYRPDGQGGIVGSMMG------------------DCRFYNVSDNH 469 (701)
Q Consensus 430 ~~~~~~~-~--------------------~i-~~i~~sp~g~~l~~gs~dg------------------~v~i~d~~~~~ 469 (701)
+-..... . .+ ...++.+.+..+++++.++ .+.-+|+.+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 6332211 0 01 1345555677888887665 68899999988
Q ss_pred eeeeeeEEeeccc--CCCCC-CeeEEEEecCCC---CEEEEEECCCcEEEEeCCccceeeec
Q 005352 470 LELDAEICVHSKK--KAPCK-RITGFQFLPQDS---SKVMVSCADSQVRILQGPNVIGKYKG 525 (701)
Q Consensus 470 ~~~~~~~~~~~~~--~~~~~-~i~~l~~~p~~~---~~l~~~s~dg~I~iwd~~~~~~~~~~ 525 (701)
.....+...+... ..... .+..+. ..++ ..+++++.+|.+..+|..+.....+.
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~--~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK--PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc--ccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 7765433211100 00000 111111 1122 26778888999999999887766653
No 359
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.72 E-value=0.69 Score=47.31 Aligned_cols=147 Identities=10% Similarity=0.043 Sum_probs=83.3
Q ss_pred eEEEEECCCcEEEEECC-CCeeeee----ec-CCCCe-EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE---EecC-
Q 005352 367 YLLSASIDKTVRLWRVG-NDHCLRV----FP-HSNYV-TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD---WVDI- 435 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~-~~~~~~~----~~-h~~~V-~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~---~~~~- 435 (701)
.|.+-+.||.+.-..+. .|+.... |. ...++ ..-++.. .+..++--+.+|.|+--|+....... +.-.
T Consensus 149 ~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 149 GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred ceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 56666677777766665 3333322 11 12222 2223333 45555557788988888887665331 1100
Q ss_pred ---------CCcEEEEEEeeCCCeEEEEecCC----------cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 436 ---------RQIVTAVCYRPDGQGGIVGSMMG----------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 436 ---------~~~i~~i~~sp~g~~l~~gs~dg----------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
.+.-.-+++++..+.|++....| .|.+||+.+.+......+. ..+.+|+++.
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---------~~~~Si~Vsq 298 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---------HPIDSIAVSQ 298 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---------EEESEEEEES
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---------CccceEEEcc
Confidence 12234477777666666643221 2888888888876554432 2367899999
Q ss_pred CCCCEEEEEE-CCCcEEEEeCCccceee
Q 005352 497 QDSSKVMVSC-ADSQVRILQGPNVIGKY 523 (701)
Q Consensus 497 ~~~~~l~~~s-~dg~I~iwd~~~~~~~~ 523 (701)
++..+|++.+ .++.+.+||..+....-
T Consensus 299 d~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 299 DDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp SSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 7766776655 57999999998765443
No 360
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.71 E-value=0.075 Score=60.69 Aligned_cols=96 Identities=13% Similarity=0.164 Sum_probs=69.1
Q ss_pred eEEEEECCCcEEEEECCCCe--eee----eecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcE
Q 005352 367 YLLSASIDKTVRLWRVGNDH--CLR----VFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIV 439 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~--~~~----~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i 439 (701)
..+.|-.+..+..||.+-.. ++. .+......+|++-. ...+||+|+.+|.||+||--..+... +.+...+|
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI 621 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI 621 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEec--CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence 45566677788899987532 332 23355667888766 45689999999999999954433333 33568999
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEEC
Q 005352 440 TAVCYRPDGQGGIVGSMMGDCRFYNV 465 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~dg~v~i~d~ 465 (701)
..|..+.||+++++.+. ..+.+++.
T Consensus 622 ~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred eEEEecCCCcEEEEeec-ceEEEEEE
Confidence 99999999999887664 66777775
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0071 Score=64.88 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=74.8
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEE-EEEEeeCCCeEEEEecCCcEEEEECCCCeee
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT-AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~-~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
....+.-+.|+| .-.++|.+..+|.|.++.+.-.++..+.-+...++ ++||.|||+.|++|-.||+|++.|+.++...
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 445678899999 88999999999999999988555555544666676 9999999999999999999999999988764
Q ss_pred eeeeEEeecccCCCCCCeeEEEEec
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
... .......|.++.|.+
T Consensus 98 ~~~-------~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSF-------LFSVETDISKGIWDR 115 (665)
T ss_pred ecc-------ccccccchheeeccc
Confidence 332 223335566777754
No 362
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.67 E-value=0.23 Score=55.77 Aligned_cols=194 Identities=14% Similarity=0.144 Sum_probs=104.8
Q ss_pred EEEEEecCCeEEEEECC------CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCc-----EEEEeCCC
Q 005352 358 LDLSWSKNNYLLSASID------KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGK-----VRIWAVLS 426 (701)
Q Consensus 358 ~~l~~s~~~~l~s~s~d------g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~-----v~iwd~~~ 426 (701)
.+++...+..+++|+.| .++..||..+.+-...-.....-..+.....++.+.++|+.||. |-.||..+
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC
Confidence 34444444477888888 35778888887744432222211222222227888999998864 77788877
Q ss_pred CcEEEEecCCCcEEEEEE-eeCCCeEEEEecCC------cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 427 CHVVDWVDIRQIVTAVCY-RPDGQGGIVGSMMG------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 427 ~~~~~~~~~~~~i~~i~~-sp~g~~l~~gs~dg------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
.+-............... .-+|...++|+.++ ++..||..++.......+.... . -.+++.. ++
T Consensus 406 ~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R------~-~~g~a~~--~~ 476 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR------S-GFGVAVL--NG 476 (571)
T ss_pred CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc------c-cceEEEE--CC
Confidence 654333322222222222 23677778887554 4788999988776543332211 1 1123332 57
Q ss_pred CEEEEEECCCc-----EEEEeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCCCc-----EEEEeCCCC
Q 005352 500 SKVMVSCADSQ-----VRILQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGEDSN-----VYMWNCIGH 561 (701)
Q Consensus 500 ~~l~~~s~dg~-----I~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~-----I~iWd~~~~ 561 (701)
.++++|+.|+. |..||..+..-.... ......-..++ .-+++..++|+.||. |-.||..+.
T Consensus 477 ~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 477 KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEecccCccccceeEEcCCCCC
Confidence 88888887763 666776543222221 11111111111 235667778877764 555654444
No 363
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.66 E-value=0.18 Score=49.85 Aligned_cols=167 Identities=10% Similarity=0.170 Sum_probs=112.6
Q ss_pred cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecC--CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC
Q 005352 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPH--SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h--~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~ 427 (701)
.|-...|.++.|+|+. .|++......-.||=..+|+.+.+++. -...-.|.+.. ++.+.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 3445569999999998 788877778888887788999988872 23345667765 6666666667888888877654
Q ss_pred cEE-E---------EecC-CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEe--ecccCCCCCCeeEEEE
Q 005352 428 HVV-D---------WVDI-RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV--HSKKKAPCKRITGFQF 494 (701)
Q Consensus 428 ~~~-~---------~~~~-~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~~ 494 (701)
..+ . ...+ +...-.++|.|..+.|+++-...-+.||.+............. .....-....+.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 211 1 1112 4567889999999999999988888888876433111111100 0001112356788999
Q ss_pred ecCCCCEEEEEECCCcEEEEeCCc
Q 005352 495 LPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
.+..+.+++-+..++.+.-.|...
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCC
Confidence 987777777777788877777653
No 364
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.037 Score=58.35 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=97.7
Q ss_pred EEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCe-------EEEEecCCcEEEEECCCCeeeeeeeE-Eeec
Q 005352 409 YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG-------GIVGSMMGDCRFYNVSDNHLELDAEI-CVHS 480 (701)
Q Consensus 409 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~-------l~~gs~dg~v~i~d~~~~~~~~~~~~-~~~~ 480 (701)
+|.++.....|+-.|+..|+++........|+-+.+.|+.+. -++|-.+..|.-||.+-.... .+ ..+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q~ 424 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQS 424 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeeec
Confidence 344555667788899999999976666666888889886542 356777888999998843321 11 1122
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
+.........|++-. ...++++|+.+|.||+||--....+-...+...+|..+..+.+|++|+..+ +..+.+-++.
T Consensus 425 kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 222223344444443 568999999999999999643222223334678999999999999988766 5566666653
No 365
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.54 E-value=0.0047 Score=40.28 Aligned_cols=37 Identities=38% Similarity=0.744 Sum_probs=32.2
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWR 381 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd 381 (701)
++...+..|...|.++.|.+.+ .+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3456677899999999999987 999999999999996
No 366
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.52 E-value=0.87 Score=44.99 Aligned_cols=189 Identities=13% Similarity=0.113 Sum_probs=112.3
Q ss_pred cEEEEEEccCCCEEEEEeCCC--cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 252 SILTMKFSPDGQYLASAGDDG--VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
-...+.|..+|.++-+.|.-| .|+.+|+.+++......++..- |.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~-----Fg---------------------------- 92 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY-----FG---------------------------- 92 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-------E----------------------------
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc-----cc----------------------------
Confidence 356788878888888888866 7889999998766555443210 00
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCE
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~ 409 (701)
+- +.-+.+.|..+.| .++...+||..+.+.+..+...+.=..++. ++..
T Consensus 93 ---------------EG---it~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~---dg~~ 141 (264)
T PF05096_consen 93 ---------------EG---ITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGLTS---DGKR 141 (264)
T ss_dssp ---------------EE---EEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EEEE---CSSC
T ss_pred ---------------ee---EEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEEEc---CCCE
Confidence 00 0112334455554 578899999999999999987777778873 5666
Q ss_pred EEEEEcCCcEEEEeCCCCcEEEEe---cCCC---cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc--
Q 005352 410 FISGSIDGKVRIWAVLSCHVVDWV---DIRQ---IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK-- 481 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~~~~~---~~~~---~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~-- 481 (701)
|+.......|+++|..+-+....+ .... .++-+.|. +|...|=.=....|...|..++...-...+.....
T Consensus 142 Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~ 220 (264)
T PF05096_consen 142 LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEV 220 (264)
T ss_dssp EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHH
T ss_pred EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcc
Confidence 776666778999998877655333 2222 34556664 55444444456677788888887654332221111
Q ss_pred -----cCCCCCCeeEEEEecCCCCEEEEE
Q 005352 482 -----KKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 482 -----~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
......-.++|++.|..+.++++|
T Consensus 221 ~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 221 GRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 111245689999999655555555
No 367
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.49 E-value=0.17 Score=54.57 Aligned_cols=109 Identities=16% Similarity=0.209 Sum_probs=69.9
Q ss_pred EEEEecCC--eEEEEECCCc--EEEEECCCCeeeeeecC-CCCeEEEEEeeCCCCEEEEEEc-CCc--EEEEeCCCCcEE
Q 005352 359 DLSWSKNN--YLLSASIDKT--VRLWRVGNDHCLRVFPH-SNYVTCVHFNPVDDNYFISGSI-DGK--VRIWAVLSCHVV 430 (701)
Q Consensus 359 ~l~~s~~~--~l~s~s~dg~--I~iWd~~~~~~~~~~~h-~~~V~~l~f~p~~~~~l~sgs~-dg~--v~iwd~~~~~~~ 430 (701)
..+|+|+| .+++...||. |.+.|+..++..+ +.+ .+.-+.=.|+| +++.++..+. .|. |.++++..+...
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 45899999 5667777776 5556887777444 432 22233556889 8888776653 343 667777777665
Q ss_pred EEecCCCcEEEEEEeeCCCeEEEEecC-Cc--EEEEECCCCe
Q 005352 431 DWVDIRQIVTAVCYRPDGQGGIVGSMM-GD--CRFYNVSDNH 469 (701)
Q Consensus 431 ~~~~~~~~i~~i~~sp~g~~l~~gs~d-g~--v~i~d~~~~~ 469 (701)
........-..-.|+|+|++++..+.. |. |.++|+.++.
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 444333333377899999998887743 44 5666665443
No 368
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.48 E-value=2.4 Score=48.74 Aligned_cols=277 Identities=16% Similarity=0.149 Sum_probs=148.6
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCe--eee--eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE--RLT--EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
..|.-..|--|..||.++..||.+.-+.+.... ... ...+...++....|.......+.+ ..+.........
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa---~sdrP~viY~~n- 659 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFA---LSDRPTVIYSSN- 659 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEE---eCCCCEEEEecC-
Confidence 356666676678899999999999877665443 211 123333444444444333222111 111111111100
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEE-EEecCC---eEEEEECCCcEEEEECCCCe--eeeeecCCCCeEEE
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDL-SWSKNN---YLLSASIDKTVRLWRVGNDH--CLRVFPHSNYVTCV 400 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l-~~s~~~---~l~s~s~dg~I~iWd~~~~~--~~~~~~h~~~V~~l 400 (701)
+ +.+..-- .-..+..+ .|+.+. .|+++. .+.+++-.+..-+ .+++.........+
T Consensus 660 -----------~------kLv~spl-s~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI 720 (1096)
T KOG1897|consen 660 -----------G------KLVYSPL-SLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRI 720 (1096)
T ss_pred -----------C------cEEEecc-chHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhhe
Confidence 0 0000000 00111111 233332 344443 4456666554332 23344455566777
Q ss_pred EEeeCCCCEEEEEEcC--------------CcEEEEeCCCCcEEEEecC--CCc---EEEEEEeeC-CCeEEEEec----
Q 005352 401 HFNPVDDNYFISGSID--------------GKVRIWAVLSCHVVDWVDI--RQI---VTAVCYRPD-GQGGIVGSM---- 456 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~d--------------g~v~iwd~~~~~~~~~~~~--~~~---i~~i~~sp~-g~~l~~gs~---- 456 (701)
++.+ ....+++.+.. ..++++|-++-+....... ... +.++.|..| +.++++|+.
T Consensus 721 ~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~P 799 (1096)
T KOG1897|consen 721 CYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYP 799 (1096)
T ss_pred Eecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeecc
Confidence 7766 34444433321 2377788777776644332 223 444558777 778888864
Q ss_pred ------CCcEEEEECCC-CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCC
Q 005352 457 ------MGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRS 529 (701)
Q Consensus 457 ------dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 529 (701)
.|.|.+|.+.. +++.......+. +.+..+..- ++.++ ++-+..|++|+..+.........+.
T Consensus 800 de~ep~~GRIivfe~~e~~~L~~v~e~~v~-------Gav~aL~~f--ngkll--A~In~~vrLye~t~~~eLr~e~~~~ 868 (1096)
T KOG1897|consen 800 DENEPVNGRIIVFEFEELNSLELVAETVVK-------GAVYALVEF--NGKLL--AGINQSVRLYEWTTERELRIECNIS 868 (1096)
T ss_pred CCCCcccceEEEEEEecCCceeeeeeeeec-------cceeehhhh--CCeEE--EecCcEEEEEEccccceehhhhccc
Confidence 57888888877 444333222222 223333222 34444 4556789999987664444444577
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 530 GNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 530 ~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.++..+...-.|..|+.|.--+.+.+-.++..+
T Consensus 869 ~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 869 NPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred CCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 889999999999999999988888877766555
No 369
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=1.5 Score=46.80 Aligned_cols=176 Identities=16% Similarity=0.185 Sum_probs=114.5
Q ss_pred CeEEEEEecCC-eEEEEEC---CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCCCCcEE
Q 005352 356 EILDLSWSKNN-YLLSASI---DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVV 430 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~---dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~~~~~~ 430 (701)
.-..+++++++ .+..+.. ++++.+.|..+.+.+....-...-..+++.| +++.++... .++.|.+.|.......
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCccee
Confidence 44578889988 5544443 7899999999998888865433338999999 887555544 7889999998776666
Q ss_pred E-----EecCCCcEEEEEEeeCCCeEEEEecC---CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 431 D-----WVDIRQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 431 ~-----~~~~~~~i~~i~~sp~g~~l~~gs~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
. ..........+.+.|+|..+.+.... +.+...|..++...... ...... ....+.+.| ++..+
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~------~~~~~~-~~~~v~~~p-~g~~~ 267 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD------LPVGSG-APRGVAVDP-AGKAA 267 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec------cccccC-CCCceeECC-CCCEE
Confidence 3 23334456778999999977776554 58888888876653210 011111 345678888 56666
Q ss_pred EEE-ECCCcEEEEeCCccceeeeccc---CCCCeEEEEEecC
Q 005352 503 MVS-CADSQVRILQGPNVIGKYKGLR---RSGNQLSACFTSD 540 (701)
Q Consensus 503 ~~~-s~dg~I~iwd~~~~~~~~~~~~---~~~~v~~l~~s~d 540 (701)
.+. +..+.+.+.|............ ....+..+++.+.
T Consensus 268 yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 268 YVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 555 4468899998875443332211 2223555555544
No 370
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.29 E-value=2 Score=45.91 Aligned_cols=185 Identities=9% Similarity=0.066 Sum_probs=104.6
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC--------------------
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-------------------- 426 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-------------------- 426 (701)
+++.-+.||.+.+++-+.......+..---...+.|.+ ..+.|++++.+..|..|....
T Consensus 147 ~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~ 225 (418)
T PF14727_consen 147 FICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISS 225 (418)
T ss_pred EEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhccccccccccccccccc
Confidence 78889999999999987766555555433344567888 777889988888888885421
Q ss_pred CcEE--E-EecCCCcEEEEEEee---CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE------
Q 005352 427 CHVV--D-WVDIRQIVTAVCYRP---DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF------ 494 (701)
Q Consensus 427 ~~~~--~-~~~~~~~i~~i~~sp---~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~------ 494 (701)
++.+ . .+...+.+..|.... ....+++-+ ..++.+.+-. +.+....++.. .+.....|
T Consensus 226 ~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~-G~l~~~krLd~--------~p~~~~~Y~~~~~~ 295 (418)
T PF14727_consen 226 GKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN-GSLRFQKRLDY--------NPSCFCPYRVPWYN 295 (418)
T ss_pred cccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-CeEEEEEecCC--------ceeeEEEEEeeccc
Confidence 1111 1 223344555554433 222333332 2445555543 33333222211 11111111
Q ss_pred ecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 495 LPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.|.....+++++.++++.||.-.+..-..+.....-.+.-..|..-...|++-+.+|.+.+-=+.+..
T Consensus 296 ~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 296 EPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred CCCCceEEEEEecCCeEEEEeCCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 11122359999999999999866544433331111122222333345688999999999988776654
No 371
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.29 E-value=1.8 Score=45.24 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=83.5
Q ss_pred CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC---C-cEEEEeCCC--CcEEEEec--CCCcEEEEEEe
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---G-KVRIWAVLS--CHVVDWVD--IRQIVTAVCYR 445 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d---g-~v~iwd~~~--~~~~~~~~--~~~~i~~i~~s 445 (701)
...|.--|+.+++....+.....+..+.|+|.++.+|+-|-.. . .-|||-+++ ........ ....+..=-|.
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred CceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence 3456667889998888888888899999999777777766532 2 136775543 22222222 22345555688
Q ss_pred eCCCeEEEEec-----CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC-----------
Q 005352 446 PDGQGGIVGSM-----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS----------- 509 (701)
Q Consensus 446 p~g~~l~~gs~-----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg----------- 509 (701)
|||..|.--+. +..|.-+|+.+......... .....+..++ ++.+++-=+.|.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~----------p~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM----------PWCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----------SEEEEEE-T-TSSEEEEEE--------------
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC----------CceeeeEEcC-CCCEEEecCCCCCccccccccce
Confidence 88886655322 33466777777654321111 1123344444 555554433332
Q ss_pred -----cEEEEeCCcccee-eecc-------cC--CCCeEEEEEecCCCEEE-EEeCCCcEEEEeCC
Q 005352 510 -----QVRILQGPNVIGK-YKGL-------RR--SGNQLSACFTSDGKHIV-SAGEDSNVYMWNCI 559 (701)
Q Consensus 510 -----~I~iwd~~~~~~~-~~~~-------~~--~~~v~~l~~s~dg~~l~-sgs~Dg~I~iWd~~ 559 (701)
-|++++....... +..+ .+ ...=....|+|||++|+ ++...|...||-++
T Consensus 316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 4556666532221 1000 00 11125688999998775 55567887777544
No 372
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.26 E-value=0.0061 Score=57.52 Aligned_cols=143 Identities=16% Similarity=-0.014 Sum_probs=81.0
Q ss_pred EEEEEcCCcEEEEeCCCCcEEE-E-ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCC
Q 005352 410 FISGSIDGKVRIWAVLSCHVVD-W-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~~~-~-~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 487 (701)
+..-+.+|.|+-++++..+... . .-+... .....-+..+++|+.+|.|.+|.......... .......
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d-------~~~s~~e 102 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSD-------RVCSGEE 102 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHH-------hhhcccc
Confidence 4445668888888876543221 0 011111 11122356799999999999998863211110 0111122
Q ss_pred CeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCC-CCeEEEEEecCCCEEEEE--eCCCcEEEEeCCCCC
Q 005352 488 RITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRS-GNQLSACFTSDGKHIVSA--GEDSNVYMWNCIGHE 562 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~-~~v~~l~~s~dg~~l~sg--s~Dg~I~iWd~~~~~ 562 (701)
.|.+..-.-+++.+..+++.++.|+.|+.......-....|. .++..+..+..+++|+.+ |.|..++.|++..-.
T Consensus 103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred cceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 333333333355689999999999999987544333332244 455555555566666666 667777777765543
No 373
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.21 E-value=1.7 Score=44.09 Aligned_cols=234 Identities=10% Similarity=0.063 Sum_probs=123.9
Q ss_pred cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecC
Q 005352 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (701)
Q Consensus 211 ~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~ 290 (701)
..++.+++|+.+| +.+++..... ..... .+...|..|...|+-+.|+.-+ |+.+.++++..-........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~-~~~~i-------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS-KPTRI-------LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc-cceeE-------eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccc
Confidence 4567788887777 8888772111 11111 1334499999999876666654 49999999876542211100
Q ss_pred CCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE--EecCC-e
Q 005352 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS--WSKNN-Y 367 (701)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~--~s~~~-~ 367 (701)
...+ +. ............+..++ -...+ .
T Consensus 75 ~~~~--------------------~~----------------------------~~~~~~~~~~~~v~~f~~~~~~~~~~ 106 (275)
T PF00780_consen 75 LAFP--------------------KS----------------------------RSLPTKLPETKGVSFFAVNGGHEGSR 106 (275)
T ss_pred cccc--------------------cc----------------------------ccccccccccCCeeEEeeccccccce
Confidence 0000 00 00000001122233333 11223 4
Q ss_pred EEEEECCCcEEEEECCCC-----eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC------
Q 005352 368 LLSASIDKTVRLWRVGND-----HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR------ 436 (701)
Q Consensus 368 l~s~s~dg~I~iWd~~~~-----~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~------ 436 (701)
.+.....+.|.+|..... +..+.+.....+..++|. ++.++.|..+ ...+.|+.++....+....
T Consensus 107 ~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~---~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~ 182 (275)
T PF00780_consen 107 RLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL---GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSF 182 (275)
T ss_pred EEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe---CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchh
Confidence 444455558888877553 466677788999999997 4677777754 4788999987766554322
Q ss_pred -------CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC
Q 005352 437 -------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (701)
Q Consensus 437 -------~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg 509 (701)
.++..+.. +++.+|++- +..-.+.|.... ......+.. ......+.+.. .++++.+. +
T Consensus 183 ~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~-~~r~~~i~W-------~~~p~~~~~~~---pyli~~~~-~ 247 (275)
T PF00780_consen 183 KSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGE-PSRKSTIQW-------SSAPQSVAYSS---PYLIAFSS-N 247 (275)
T ss_pred hhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCC-cCcccEEEc-------CCchhEEEEEC---CEEEEECC-C
Confidence 12333333 344555542 334444454432 211111111 12345566643 45555444 5
Q ss_pred cEEEEeCCccce
Q 005352 510 QVRILQGPNVIG 521 (701)
Q Consensus 510 ~I~iwd~~~~~~ 521 (701)
.|.||++.+...
T Consensus 248 ~iEV~~~~~~~l 259 (275)
T PF00780_consen 248 SIEVRSLETGEL 259 (275)
T ss_pred EEEEEECcCCcE
Confidence 599999886543
No 374
>PHA02713 hypothetical protein; Provisional
Probab=95.98 E-value=0.31 Score=54.86 Aligned_cols=185 Identities=12% Similarity=0.059 Sum_probs=95.7
Q ss_pred CC-eEEEEECC------CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCC-----cEEEEeCCCCcEE
Q 005352 365 NN-YLLSASID------KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG-----KVRIWAVLSCHVV 430 (701)
Q Consensus 365 ~~-~l~s~s~d------g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg-----~v~iwd~~~~~~~ 430 (701)
++ .++.|+.+ ..+..||..+......-. ....-.+++.. ++.+.+.|+.++ .+..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 44 56666643 347788887775432222 11111122222 677888888764 4788998876543
Q ss_pred EEecCCCcEEEE-EEeeCCCeEEEEecCC-----------------------cEEEEECCCCeeeeeeeEEeecccCCCC
Q 005352 431 DWVDIRQIVTAV-CYRPDGQGGIVGSMMG-----------------------DCRFYNVSDNHLELDAEICVHSKKKAPC 486 (701)
Q Consensus 431 ~~~~~~~~i~~i-~~sp~g~~l~~gs~dg-----------------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 486 (701)
.......+.... +..-+|+..++|+.++ .+..||..+++......+.. . .
T Consensus 381 ~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-----~-r 454 (557)
T PHA02713 381 MLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-----G-T 454 (557)
T ss_pred ECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc-----c-c
Confidence 322222211111 1123677777777542 47788888876643221110 0 0
Q ss_pred CCeeEEEEecCCCCEEEEEECC------CcEEEEeCCc-cc--eeeecccCCCCeEEEEEecCCCEEEEEeCCC--cEEE
Q 005352 487 KRITGFQFLPQDSSKVMVSCAD------SQVRILQGPN-VI--GKYKGLRRSGNQLSACFTSDGKHIVSAGEDS--NVYM 555 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~s~d------g~I~iwd~~~-~~--~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg--~I~i 555 (701)
.. .+++.. ++.+.++|+.+ ..+..||..+ .. ..............+. -+|+..++|+.|| .+..
T Consensus 455 ~~-~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 455 IR-PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDT 529 (557)
T ss_pred cc-CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhh
Confidence 11 122222 46777777754 2356788764 22 1111111112222222 3778888999888 6677
Q ss_pred EeCCCCC
Q 005352 556 WNCIGHE 562 (701)
Q Consensus 556 Wd~~~~~ 562 (701)
||..+.+
T Consensus 530 yd~~~~~ 536 (557)
T PHA02713 530 FNVYTYE 536 (557)
T ss_pred cCccccc
Confidence 7766665
No 375
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.94 E-value=0.49 Score=51.21 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=66.4
Q ss_pred C-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC------------cEEEE
Q 005352 366 N-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC------------HVVDW 432 (701)
Q Consensus 366 ~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~------------~~~~~ 432 (701)
| .|+..+ ++.|.+||+.+++.++.+.... |..+.|++ ++.+++..+.+ .+.|++.... .....
T Consensus 117 G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence 6 444444 4489999999999999998664 89999999 88999888754 6888876544 33333
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
......|.+.+|..+ .++-.+.. .++. +-.+...... ....++.-+.+.| ..+.+.....|+.|.
T Consensus 193 ~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~---------~ld~~~yllgy~~-~~~~ly~~Dr~~~v~ 257 (443)
T PF04053_consen 193 HEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA---------HLDKPLYLLGYLP-KENRLYLIDRDGNVI 257 (443)
T ss_dssp EEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE---------E-SS--EEEEEET-TTTEEEEE-TT--EE
T ss_pred EEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE---------EcCCceEEEEEEc-cCCEEEEEECCCCEE
Confidence 333667888888755 33333332 4444 3223221100 0112344444454 345555555666666
Q ss_pred EEeCC
Q 005352 513 ILQGP 517 (701)
Q Consensus 513 iwd~~ 517 (701)
.+.+.
T Consensus 258 ~~~ld 262 (443)
T PF04053_consen 258 SYELD 262 (443)
T ss_dssp EEE--
T ss_pred EEEEC
Confidence 55544
No 376
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.90 E-value=0.25 Score=53.22 Aligned_cols=155 Identities=14% Similarity=0.187 Sum_probs=88.5
Q ss_pred CCCeEEEEEeeCCCCEEEEEE---cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeC----CCeEEEEecCCcEEEEECC
Q 005352 394 SNYVTCVHFNPVDDNYFISGS---IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD----GQGGIVGSMMGDCRFYNVS 466 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs---~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~----g~~l~~gs~dg~v~i~d~~ 466 (701)
-.++..++|. ||+.++-.. .+|.+++=|. . .++.-..|..++|.|- ...+++.-....|.+|.+.
T Consensus 19 iHPvhGlaWT--DGkqVvLT~L~l~~gE~kfGds---~---viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT--DGKQVVLTDLQLHNGEPKFGDS---K---VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec--CCCEEEEEeeeeeCCccccCCc---c---EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3578899997 566555432 2333333221 2 2333456899999994 3356666677899999986
Q ss_pred CC-----eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceee-ecccCCCCeEEEEEecC
Q 005352 467 DN-----HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY-KGLRRSGNQLSACFTSD 540 (701)
Q Consensus 467 ~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~l~~s~d 540 (701)
.. ++.....-.+.. ...---.++.|+| ....|++-.....-.++++....... .-....+.|.|.+|.+|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e---~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~D 166 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIRE---PFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKD 166 (671)
T ss_pred cCccccccceeeeeeeccC---CcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCc
Confidence 32 222221111111 1111235678999 55666655554444455554222111 12246788999999999
Q ss_pred CCEEEEEe-CCCcEEEEeCCC
Q 005352 541 GKHIVSAG-EDSNVYMWNCIG 560 (701)
Q Consensus 541 g~~l~sgs-~Dg~I~iWd~~~ 560 (701)
|+.|+.+- ..=.-||||-..
T Consensus 167 G~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CCEEEEEeCCeEEEEEecCch
Confidence 99887763 334578898543
No 377
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.89 E-value=1.9 Score=42.91 Aligned_cols=163 Identities=10% Similarity=0.169 Sum_probs=101.6
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+-+..|.++.|+|+.+.|++......-.||=..+|+.+.++.+...
T Consensus 79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~------------------------------ 128 (316)
T COG3204 79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF------------------------------ 128 (316)
T ss_pred cccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc------------------------------
Confidence 44556666799999999999999888888888887777877666543221
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeee----------eeec
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCL----------RVFP 392 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~----------~~~~ 392 (701)
..--.|.|..+| +.++--.++.+.++.+.....+ ....
T Consensus 129 -------------------------------~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~ 177 (316)
T COG3204 129 -------------------------------SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTN 177 (316)
T ss_pred -------------------------------CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccC
Confidence 122344555555 4444445666666665544221 1112
Q ss_pred C-CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc-EE--E-EecC-------CCcEEEEEEeeC-CCeEEEEecCCc
Q 005352 393 H-SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VV--D-WVDI-------RQIVTAVCYRPD-GQGGIVGSMMGD 459 (701)
Q Consensus 393 h-~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-~~--~-~~~~-------~~~i~~i~~sp~-g~~l~~gs~dg~ 459 (701)
+ +...-.++|.| .+..|+.+-.-.-+.||.+.... .. . ...+ -..+.++.|++. +..++.+..++.
T Consensus 178 k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~ 256 (316)
T COG3204 178 KKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRR 256 (316)
T ss_pred CCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCce
Confidence 3 56678999999 66666666666677777665332 11 1 1111 124677888874 555666666777
Q ss_pred EEEEECCCC
Q 005352 460 CRFYNVSDN 468 (701)
Q Consensus 460 v~i~d~~~~ 468 (701)
+.-.|....
T Consensus 257 l~Evd~~G~ 265 (316)
T COG3204 257 LLEVDLSGE 265 (316)
T ss_pred EEEEecCCC
Confidence 777777654
No 378
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.88 E-value=4.7 Score=46.50 Aligned_cols=331 Identities=14% Similarity=0.110 Sum_probs=159.0
Q ss_pred eecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeee
Q 005352 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEV 288 (701)
Q Consensus 209 ~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~ 288 (701)
+..++...+.+..+|.+...-..........+....++-+-..-..|+.+-++| .|..|+.-|.=++-.+.+......+
T Consensus 265 v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng-~lFvGS~~gdSqLi~L~~e~d~gsy 343 (1096)
T KOG1897|consen 265 VDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG-VLFVGSRFGDSQLIKLNTEPDVGSY 343 (1096)
T ss_pred ccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc-eEEEeccCCceeeEEccccCCCCch
Confidence 344555566677777665554432222222212222334455556677776666 7888888776666665443211000
Q ss_pred cCCCCCCceeEEeeccCCCcceee---ecc-ccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE--E
Q 005352 289 DIPEIDPSCIYFTVNHLSELKPLF---MDK-EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS--W 362 (701)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~--~ 362 (701)
. .+.-...+...+..+. .+. ....++.......++...++.+.+ .+.+-....+.| -..++.+. +
T Consensus 344 ~-------~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi-~I~e~A~i~l~G-ikg~w~lk~~v 414 (1096)
T KOG1897|consen 344 V-------VILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGI-GIDELASIDLPG-IKGMWSLKSMV 414 (1096)
T ss_pred h-------hhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEeccc-ccceeeEeecCC-ccceeEeeccc
Confidence 0 0000000111111111 111 112222222222333333322221 111222233444 34455555 3
Q ss_pred ecC--CeEEEEECCCcEEEEECCCC-eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcE
Q 005352 363 SKN--NYLLSASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV 439 (701)
Q Consensus 363 s~~--~~l~s~s~dg~I~iWd~~~~-~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i 439 (701)
.++ .+|+.+--+ .-++..+... +.............+..+...++.|+-.. ...||+++-. +....|.. ...+
T Consensus 415 ~~~~d~ylvlsf~~-eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~-~~~~~W~~-p~~~ 490 (1096)
T KOG1897|consen 415 DENYDNYLVLSFIS-ETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA-GLRSEWRP-PGKI 490 (1096)
T ss_pred cccCCcEEEEEecc-ceEEEEEccceEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch-hhhhcccC-CCce
Confidence 332 244443333 2333443322 11111122333444444444555555444 3458888765 33334443 3445
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC--CCC---EEEEEECCCcEEEE
Q 005352 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ--DSS---KVMVSCADSQVRIL 514 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~--~~~---~l~~~s~dg~I~iw 514 (701)
+....+.+...+++++.++.+...++....+.... +......|.|+.++|- +.+ ++++|..+..+.+.
T Consensus 491 ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~-------~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l 563 (1096)
T KOG1897|consen 491 TIGVVSANASQVVVAGGGLALFYLEIEDGGLREVS-------HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMIL 563 (1096)
T ss_pred EEEEEeecceEEEEecCccEEEEEEeeccceeeee-------eheecceeEEEecccCCCCCCcceEEEEEeecceEEEE
Confidence 55555556667777777777777777665532111 2223466889988874 334 88888887776664
Q ss_pred eC-Cccceee----ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 515 QG-PNVIGKY----KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 515 d~-~~~~~~~----~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
-. .+..... ....-...|.-..|-.|..||.++..||.+..|.++.
T Consensus 564 ~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 564 TFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred EECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 32 2222111 1111234566666777789999999999998776544
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.68 E-value=0.51 Score=53.14 Aligned_cols=184 Identities=11% Similarity=0.074 Sum_probs=98.5
Q ss_pred cCeEEEEEecCC-eEEEEE------CCC--cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC---------
Q 005352 355 GEILDLSWSKNN-YLLSAS------IDK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID--------- 416 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s------~dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d--------- 416 (701)
..+...+++|++ .++..- .|. .|.+++... .. ..+......+.-.|+| ++..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEecc
Confidence 467888999999 444333 243 455555422 22 3332233478888999 87777766432
Q ss_pred ---CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEE---EECCCCeeeeeeeEEeecccCCCCCCee
Q 005352 417 ---GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRF---YNVSDNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 417 ---g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i---~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
+.+.+.++..+.... .....|..+.|+|||..++... +|.|.+ -....+...+.....+ .......+.
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l---~~~l~~~~~ 500 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV---GPGLGDTAV 500 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe---ecccCCccc
Confidence 223333443333322 3356799999999999988866 477776 3433443222111111 111223357
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEe--CCccceee-ecccCCCCeEEEEEecCCCEEEEEeCCC
Q 005352 491 GFQFLPQDSSKVMVSCADSQVRILQ--GPNVIGKY-KGLRRSGNQLSACFTSDGKHIVSAGEDS 551 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg~I~iwd--~~~~~~~~-~~~~~~~~v~~l~~s~dg~~l~sgs~Dg 551 (701)
.+.|.+ ++. |+++..++...+|. +....... ........+..++-+++ .|+.+..+|
T Consensus 501 ~l~W~~-~~~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 501 SLDWRT-GDS-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred cceEec-CCE-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 788998 445 44555544444554 33222221 22223556677766653 455555566
No 380
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.65 E-value=0.0047 Score=68.55 Aligned_cols=139 Identities=12% Similarity=0.114 Sum_probs=76.6
Q ss_pred CCcEEEEeCCCCcE--EEEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCC--CeeeeeeeEEeecccCCCCCCee
Q 005352 416 DGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 416 dg~v~iwd~~~~~~--~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
.+.+++-+...... .-..+..+.+..+.|-. +...+. -.-|.+.+|++.- +++.....+.+..........|.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 45566666654332 11223455566666643 111111 2336788888764 33333333333333333333344
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEeCCccce-eeecccCCCCeEEEE-----------EecCCCEEEEEeCCCcEEEEeC
Q 005352 491 GFQFLPQDSSKVMVSCADSQVRILQGPNVIG-KYKGLRRSGNQLSAC-----------FTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~-----------~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
...|.+ +.-++..+-.++.|++........ .+.. |...++.++ .+|||..++++..||.+++|.+
T Consensus 188 wcp~~~-~~~~ic~~~~~~~i~lL~~~ra~~~l~rs--Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 188 WCPIAV-NKVYICYGLKGGEIRLLNINRALRSLFRS--HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eccccc-ccceeeeccCCCceeEeeechHHHHHHHh--cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 344444 446677777789999987654332 2232 444444333 6889999999999999888875
Q ss_pred C
Q 005352 559 I 559 (701)
Q Consensus 559 ~ 559 (701)
.
T Consensus 265 y 265 (1283)
T KOG1916|consen 265 Y 265 (1283)
T ss_pred e
Confidence 4
No 381
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=0.091 Score=60.40 Aligned_cols=125 Identities=8% Similarity=0.025 Sum_probs=86.9
Q ss_pred CcEEEEEEeeCCCeEEEEecC--CcEEEEECCCCeeee---eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 437 QIVTAVCYRPDGQGGIVGSMM--GDCRFYNVSDNHLEL---DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~d--g~v~i~d~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
-++..+...+|+...++.... -.|..||++.-.... ...++.+...........++.|+|.-....++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 456666667777665554433 368899997643221 222222222333445567888999767778888999999
Q ss_pred EEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 512 RILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
++..+...............+++++|+|.|+.++.|-..|++.-|...-.
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc
Confidence 99887755554444446678899999999999999999999999976543
No 382
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.45 E-value=4.2 Score=42.94 Aligned_cols=288 Identities=14% Similarity=0.161 Sum_probs=133.8
Q ss_pred ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEE
Q 005352 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYF 300 (701)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~ 300 (701)
..+.+.||++....... +......+....|||+|+++|-.. ++.|.+++..++... .+.... ...+..
T Consensus 21 ~~~~y~i~d~~~~~~~~--------l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~-~lT~dg--~~~i~n 88 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITP--------LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET-QLTTDG--EPGIYN 88 (353)
T ss_dssp EEEEEEEEETTTTEEEE--------SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE-ESES----TTTEEE
T ss_pred cceeEEEEecCCCceEE--------CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeE-Eecccc--ceeEEc
Confidence 45678888876532211 111256788999999999999886 578999988776432 222111 111111
Q ss_pred eec------c-CCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCcc---CeEEEEEecCC-eEE
Q 005352 301 TVN------H-LSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG---EILDLSWSKNN-YLL 369 (701)
Q Consensus 301 ~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~I~~l~~s~~~-~l~ 369 (701)
... . ...-..+.+++++..+....-.......+ .+..+..... .+..+.+-.-| .-.
T Consensus 89 G~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~------------~~~~~~~~~~~yp~~~~~~YPk~G~~np 156 (353)
T PF00930_consen 89 GVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY------------PLPDYSPPDSQYPEVESIRYPKAGDPNP 156 (353)
T ss_dssp SB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE------------EEEEESSSTESS-EEEEEE--BTTS---
T ss_pred CccceeccccccccccceEECCCCCEEEEEEECCcCCceE------------EeeccCCccccCCcccccccCCCCCcCC
Confidence 000 0 12223344444443333221111111100 0111111111 34444443333 111
Q ss_pred EEECCCcEEEEECCCCeeeee--e----cCCCCeEEEEEeeCCCCEEEEEE--cCC---cEEEEeCCCCcEE--EEecCC
Q 005352 370 SASIDKTVRLWRVGNDHCLRV--F----PHSNYVTCVHFNPVDDNYFISGS--IDG---KVRIWAVLSCHVV--DWVDIR 436 (701)
Q Consensus 370 s~s~dg~I~iWd~~~~~~~~~--~----~h~~~V~~l~f~p~~~~~l~sgs--~dg---~v~iwd~~~~~~~--~~~~~~ 436 (701)
.-.+.|+|+.+++.... . .....+..+.|.+ ++..|+..- .+. .+.++|..++... ......
T Consensus 157 ----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 157 ----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp ----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred ----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 11366788888765321 1 2456789999999 777444333 222 3667788766433 222222
Q ss_pred Cc---EEEEEEe-eCCCe-EEEEecCCcEEE--EECCCCeeeeeeeEEeecccCCCCCCeeE-EEEecCCCCEEEEEECC
Q 005352 437 QI---VTAVCYR-PDGQG-GIVGSMMGDCRF--YNVSDNHLELDAEICVHSKKKAPCKRITG-FQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 437 ~~---i~~i~~s-p~g~~-l~~gs~dg~v~i--~d~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~~p~~~~~l~~~s~d 508 (701)
.. ...+.+. +++.. +.....+|.-+| ++...+.... .....-.|+. +.+.+.++.+++++..+
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~---------lT~G~~~V~~i~~~d~~~~~iyf~a~~~ 302 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ---------LTSGDWEVTSILGWDEDNNRIYFTANGD 302 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE---------SS-SSS-EEEEEEEECTSSEEEEEESSG
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec---------cccCceeecccceEcCCCCEEEEEecCC
Confidence 22 2244444 55554 444556666554 4555443211 1222344544 56667545555566553
Q ss_pred ----CcEEEEeCC-ccceeeecccCCCCeEEEEEecCCCEEEEE
Q 005352 509 ----SQVRILQGP-NVIGKYKGLRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 509 ----g~I~iwd~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~sg 547 (701)
..|+..++. ......-. .....-..+.|||+|++++-.
T Consensus 303 ~p~~r~lY~v~~~~~~~~~~LT-~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 303 NPGERHLYRVSLDSGGEPKCLT-CEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp GTTSBEEEEEETTETTEEEESS-TTSSTTEEEEE-TTSSEEEEE
T ss_pred CCCceEEEEEEeCCCCCeEecc-CCCCCceEEEECCCCCEEEEE
Confidence 245555555 22221111 111112689999999988754
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=2.2 Score=45.62 Aligned_cols=95 Identities=16% Similarity=0.229 Sum_probs=64.5
Q ss_pred EEEECCCcEEEEECCCCee--eee-----ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEE
Q 005352 369 LSASIDKTVRLWRVGNDHC--LRV-----FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVT 440 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~~~--~~~-----~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~ 440 (701)
+.|-.|..|.-||.+-... +.. +.......|++-. ...++++|+.+|.||+||--..+.. .+.+...+|.
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~ 475 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK 475 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCcee
Confidence 3455677888898863322 111 2233445666554 4668999999999999997433333 4556788999
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEECC
Q 005352 441 AVCYRPDGQGGIVGSMMGDCRFYNVS 466 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~dg~v~i~d~~ 466 (701)
.|..+.+|++|++.+ +..+.+.++.
T Consensus 476 hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 476 HVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eEEeeccCcEEEEec-ccEEEEEEEe
Confidence 999999999987665 4566666654
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.35 E-value=0.37 Score=47.24 Aligned_cols=211 Identities=18% Similarity=0.218 Sum_probs=110.7
Q ss_pred CceeccCCCcEEEEEEccCCCEEEEEeCC-----CcEEEEEeecC-eeeeeecCCCCCCceeEEeeccCCCcceee---e
Q 005352 243 GQEIQAHDGSILTMKFSPDGQYLASAGDD-----GVVRLWQVVED-ERLTEVDIPEIDPSCIYFTVNHLSELKPLF---M 313 (701)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~D-----g~I~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 313 (701)
.+.+-+|. .|||||.+|...-.| |.|-|||...+ +.+.++..+...+.-+.+..++...+..-. .
T Consensus 112 ~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIet 185 (366)
T COG3490 112 GRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIET 185 (366)
T ss_pred Cceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceec
Confidence 34556675 689999998765443 78999998754 345555555555544444443321110000 0
Q ss_pred c-cccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEEC-CC-----cEEEEECCCCe
Q 005352 314 D-KEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASI-DK-----TVRLWRVGNDH 386 (701)
Q Consensus 314 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~-dg-----~I~iWd~~~~~ 386 (701)
. ..+...+. -..-...++..+.....+.+|...--.-+...|..++.-++|.+..+.. -| --.+=....++
T Consensus 186 hpdfgR~~lN--ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~ 263 (366)
T COG3490 186 HPDFGRTELN--LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGE 263 (366)
T ss_pred ccccCccccc--hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCC
Confidence 0 00000000 0111112222222222333332222224556688888888884444332 11 11111223344
Q ss_pred eeeeec--------CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCC
Q 005352 387 CLRVFP--------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG 458 (701)
Q Consensus 387 ~~~~~~--------h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg 458 (701)
.+..+. ..++|-+|+.+..++-..++.-..+...+||..++.++......+ +.-..+....+++.+.+|
T Consensus 264 ~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d---aaGva~~~~gf~vssg~G 340 (366)
T COG3490 264 PLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD---AAGVAAAKGGFAVSSGQG 340 (366)
T ss_pred cCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc---cccceeccCceEEecCCc
Confidence 444443 456888999987344444455556678899999999886543322 122334566788888899
Q ss_pred cEEEEE
Q 005352 459 DCRFYN 464 (701)
Q Consensus 459 ~v~i~d 464 (701)
.+.+|.
T Consensus 341 ~~~~~s 346 (366)
T COG3490 341 RIIFYS 346 (366)
T ss_pred eEEecc
Confidence 999884
No 385
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.30 E-value=2.4 Score=48.82 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=28.5
Q ss_pred CCccCeEEEEEecCC----eEEEEECCCcEEEEECCCC
Q 005352 352 GHSGEILDLSWSKNN----YLLSASIDKTVRLWRVGND 385 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~----~l~s~s~dg~I~iWd~~~~ 385 (701)
.+...|..+.|+|.+ .|+.-..|+++|+||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 455789999999963 8999999999999999653
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.27 E-value=3.5 Score=40.86 Aligned_cols=185 Identities=7% Similarity=0.066 Sum_probs=108.9
Q ss_pred cCeEEEEEecCC-eEEEEECCC--cEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE
Q 005352 355 GEILDLSWSKNN-YLLSASIDK--TVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg--~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~ 429 (701)
.....+.|..++ ++-+.+.-| .|+.+|+.+++.+.... ..-.--.++.. ++.++.-.-.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 345678887777 666777666 69999999998877665 33334455554 455555666789999999999988
Q ss_pred EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC
Q 005352 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (701)
Q Consensus 430 ~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg 509 (701)
+..+.....=..++ .+++.|+.......++++|..+-+......... .......++-+.+.. +.+.+=.-...
T Consensus 123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~---~g~pv~~LNELE~i~--G~IyANVW~td 195 (264)
T PF05096_consen 123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD---NGRPVSNLNELEYIN--GKIYANVWQTD 195 (264)
T ss_dssp EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE---TTEE---EEEEEEET--TEEEEEETTSS
T ss_pred EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE---CCEECCCcEeEEEEc--CEEEEEeCCCC
Confidence 87777666667776 678889998888899999988765543333222 122334456666653 33333333344
Q ss_pred cEEEEeCCc-----------cceeeec----ccCCCCeEEEEEecCCCEEEEEe
Q 005352 510 QVRILQGPN-----------VIGKYKG----LRRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 510 ~I~iwd~~~-----------~~~~~~~----~~~~~~v~~l~~s~dg~~l~sgs 548 (701)
.|...|..+ ....... .....-.+.+++.|..+.|...+
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 444445443 2211111 11235578999998776555444
No 387
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.22 E-value=0.059 Score=37.85 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=29.5
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCe
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~ 283 (701)
...|.+++|+|...+||.|..||.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 444
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=0.26 Score=56.61 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=54.0
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.+...-...++.|+..|.|-..|+...-.. +... ..-+++|++++|+.+|..++.|-.+|.|.+||+..++.++
T Consensus 93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~---~~~n---e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~ 166 (1206)
T KOG2079|consen 93 ISSAIVVVPIVIGTSHGHVLLSDMTGNLGP---LHQN---ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK 166 (1206)
T ss_pred eeeeeeeeeEEEEcCchhhhhhhhhcccch---hhcC---CccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee
Confidence 334444455667777777777765432111 1000 1136799999999999999999999999999999887665
Q ss_pred eecCC
Q 005352 287 EVDIP 291 (701)
Q Consensus 287 ~~~~~ 291 (701)
.+...
T Consensus 167 ~i~e~ 171 (1206)
T KOG2079|consen 167 VITEH 171 (1206)
T ss_pred eeeec
Confidence 55443
No 389
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.01 E-value=2.6 Score=44.07 Aligned_cols=183 Identities=13% Similarity=0.065 Sum_probs=85.8
Q ss_pred EEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEee-CCCCEEEEEEc----------------------
Q 005352 361 SWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNP-VDDNYFISGSI---------------------- 415 (701)
Q Consensus 361 ~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p-~~~~~l~sgs~---------------------- 415 (701)
.+++++ .++-......|+-.|+.+.+....+. ....+-...|.. .++..++-.-.
T Consensus 87 ~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p 166 (386)
T PF14583_consen 87 FLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP 166 (386)
T ss_dssp EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred EEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence 345555 54444455678888888877665555 344444455542 23444332211
Q ss_pred CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCc-----EEEEECCCCeeeeeeeEEeecccCCCCCCee
Q 005352 416 DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGD-----CRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 416 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~-----v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
...|.--|+.+++...+......+..+.|+|....+++=+..|- -+||-+++..-... .++ .......+.
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~---~v~--~~~~~e~~g 241 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVK---KVH--RRMEGESVG 241 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---E---ESS-----TTEEEE
T ss_pred CceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcce---eee--cCCCCcccc
Confidence 13455568888888888888888999999997666666444331 35665543321110 011 112233344
Q ss_pred EEEEecCCCCEEEEEEC----CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCC
Q 005352 491 GFQFLPQDSSKVMVSCA----DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~----dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D 550 (701)
.=-|.|++..+...+.. +..|.-+|..+....... .......+-.++||++++-=+.|
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--EMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--EE-SEEEEEE-TTSSEEEEEE--
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--eCCceeeeEEcCCCCEEEecCCC
Confidence 44567743333333321 334555666654433211 12234566667899877754544
No 390
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.95 E-value=5.9 Score=42.08 Aligned_cols=98 Identities=11% Similarity=0.021 Sum_probs=55.5
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCCC-----e---eeeeecC-----CCCeEEEEEeeCCCCEEEEEEcC------
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGND-----H---CLRVFPH-----SNYVTCVHFNPVDDNYFISGSID------ 416 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~-----~---~~~~~~h-----~~~V~~l~f~p~~~~~l~sgs~d------ 416 (701)
....|++.+++ |+.+......++.|.... + .+..+.. ......++|.| ++.+.++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence 45678888888 444444443334454321 1 1122221 34477899999 88776654421
Q ss_pred -------------CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEe
Q 005352 417 -------------GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS 455 (701)
Q Consensus 417 -------------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs 455 (701)
|.|.-++..+++...+...-.....++|+|+|+.+++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 345555555554433333334467899999998876644
No 391
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.93 E-value=1 Score=50.81 Aligned_cols=158 Identities=9% Similarity=0.024 Sum_probs=85.2
Q ss_pred CCeEEEEEeeCCCCEEEEEE------cCC--cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCc-EEEEEC
Q 005352 395 NYVTCVHFNPVDDNYFISGS------IDG--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGD-CRFYNV 465 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs------~dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~-v~i~d~ 465 (701)
..+...+++| +++.++... .|. .|.+++... ....+.. ....+.-.|+|+|+.+++...... +++.+-
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999 888877665 243 455556532 2233332 234888999999998887754322 333332
Q ss_pred CCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE---EeCCccceee----ec-ccCCCCeEEEEE
Q 005352 466 SDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI---LQGPNVIGKY----KG-LRRSGNQLSACF 537 (701)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i---wd~~~~~~~~----~~-~~~~~~v~~l~~ 537 (701)
.......................|..+.|+| ++..++... +++|++ -........+ .. ......+.++.|
T Consensus 427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 427 PATGQLARTPVDASAVASRVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CCCceEEEEeccCchhhhccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 2111111111100000112245799999999 666666655 477777 3322222112 11 112234688999
Q ss_pred ecCCCEEEEEeCCCcEEEEeC
Q 005352 538 TSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 538 s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
..++.++ .+..++...+|.+
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred ecCCEEE-EEecCCCCceEEE
Confidence 9998855 5555554445543
No 392
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.81 E-value=8.6 Score=43.01 Aligned_cols=97 Identities=8% Similarity=-0.009 Sum_probs=61.0
Q ss_pred CCcEEEEECCCCeeeeeecCC--C------------------------------Ce-EEEEEeeCCCCEEEEEEcC----
Q 005352 374 DKTVRLWRVGNDHCLRVFPHS--N------------------------------YV-TCVHFNPVDDNYFISGSID---- 416 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~--~------------------------------~V-~~l~f~p~~~~~l~sgs~d---- 416 (701)
+|.|..+|.++++.+..+... . .+ ..+.+.| ..++++.+..+
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~ 258 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPW 258 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCC
Confidence 689999999999988776411 0 00 1235555 44555554422
Q ss_pred -C-----------cEEEEeCCCCcEEEEe---cCC-------CcEEEEEEeeCCC---eEEEEecCCcEEEEECCCCeee
Q 005352 417 -G-----------KVRIWAVLSCHVVDWV---DIR-------QIVTAVCYRPDGQ---GGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 417 -g-----------~v~iwd~~~~~~~~~~---~~~-------~~i~~i~~sp~g~---~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
+ .|.-.|+++++..-.+ .|. ....-+.+..+|+ .++.+..+|.+.+.|-.+++++
T Consensus 259 ~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 259 NSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 2 5666788888876222 121 1122233334676 7788999999999999998875
No 393
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.69 E-value=3 Score=44.05 Aligned_cols=95 Identities=20% Similarity=0.325 Sum_probs=52.8
Q ss_pred CCcEEEEECCCCeeeeeecCC---CCeEEEEEeeCC--CCE-EEEEEcCCcEEEEeC-CCCc-----EEEEec-------
Q 005352 374 DKTVRLWRVGNDHCLRVFPHS---NYVTCVHFNPVD--DNY-FISGSIDGKVRIWAV-LSCH-----VVDWVD------- 434 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~---~~V~~l~f~p~~--~~~-l~sgs~dg~v~iwd~-~~~~-----~~~~~~------- 434 (701)
..++.+||+.+.+.++++... ..+..|.|.. + ..+ |+.+....+|..|-- ..++ ++.+..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH-~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLH-DPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-S-STT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecC-CCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 468999999999999999743 3466677765 3 223 444445555555432 3332 222211
Q ss_pred ---C-------CCcEEEEEEeeCCCeEEEEec-CCcEEEEECCCCe
Q 005352 435 ---I-------RQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNH 469 (701)
Q Consensus 435 ---~-------~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~ 469 (701)
. ..-|+.|.++.|.++|.+... .|.|+.||+.+..
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 1 345899999999999988775 8999999998753
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=0.52 Score=54.30 Aligned_cols=96 Identities=18% Similarity=0.237 Sum_probs=70.9
Q ss_pred eEEEEECCCcEEEEECCCCee--eeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec-CCCc---EE
Q 005352 367 YLLSASIDKTVRLWRVGNDHC--LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-IRQI---VT 440 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~--~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~---i~ 440 (701)
.++.|+..|.|-..|+...-+ .+--...++|++++|+. ++..++.|-.+|.|.+||+..++..+.+. +..+ +.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 688888889998888766422 22223568999999998 99999999999999999999987775443 3344 33
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEEC
Q 005352 441 AVCYRPDGQGGIVGSMMGDCRFYNV 465 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~dg~v~i~d~ 465 (701)
.+.+..++..++++...|. +|.+
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEE
Confidence 4445556677888888776 5554
No 395
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.59 E-value=1.4 Score=47.74 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=75.4
Q ss_pred CCccCeEEEEEecCC-----eEEEEECCCcEEEEECC-----CCeeeee----ec--CCCCeEEEEEeeCCCCEEEEEEc
Q 005352 352 GHSGEILDLSWSKNN-----YLLSASIDKTVRLWRVG-----NDHCLRV----FP--HSNYVTCVHFNPVDDNYFISGSI 415 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-----~l~s~s~dg~I~iWd~~-----~~~~~~~----~~--h~~~V~~l~f~p~~~~~l~sgs~ 415 (701)
|.-..|..+.|.|-+ .|++....+.|.||.+. +.+.+.. +. ..--...+.|+| ....|+.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence 344568999999853 68888889999999875 2222221 11 112235677999 7777766554
Q ss_pred CCcEEEEeCC--CCcEEEEecCCCcEEEEEEeeCCCeEEEEecC-CcEEEEECCC
Q 005352 416 DGKVRIWAVL--SCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM-GDCRFYNVSD 467 (701)
Q Consensus 416 dg~v~iwd~~--~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d-g~v~i~d~~~ 467 (701)
...=.+++++ +.++..-+...+-|.|.||.+||+.|+++-.. =.-++||-..
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 4443455554 34455556778899999999999998887543 2345777543
No 396
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=0.15 Score=58.72 Aligned_cols=143 Identities=15% Similarity=0.104 Sum_probs=93.1
Q ss_pred CeEEEEEecCC---eEEEEECCCcEEEEECCCCeee--------ee----ecCCCCeEEEEEeeCCCCEEEEEEcCCcEE
Q 005352 356 EILDLSWSKNN---YLLSASIDKTVRLWRVGNDHCL--------RV----FPHSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (701)
Q Consensus 356 ~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~~~~--------~~----~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~ 420 (701)
.|..+...++. .++..+.+-.|..||+++...- +. +.....+.++.|+|.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 34444455555 3344444557889998654221 11 114456778999995556677788899999
Q ss_pred EEeCCCC-cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 421 IWAVLSC-HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 421 iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
+..+... +.+.........++++|+|.|+.+++|-..|++..|...-... ..++........+|.+++|.. ..
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik-----~~ip~Pp~~e~yrvl~v~Wl~-t~ 255 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK-----SEIPEPPVEENYRVLSVTWLS-TQ 255 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee-----ecccCCCcCCCcceeEEEEec-ce
Confidence 9877543 2334456677899999999999999999999999987653211 122222233368899999987 33
Q ss_pred CEEEE
Q 005352 500 SKVMV 504 (701)
Q Consensus 500 ~~l~~ 504 (701)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 44443
No 397
>PHA03098 kelch-like protein; Provisional
Probab=94.53 E-value=1.8 Score=48.67 Aligned_cols=181 Identities=10% Similarity=0.073 Sum_probs=87.7
Q ss_pred eEEEEECCC------cEEEEECCCCeeeeeecC--CCCeEEEEEeeCCCCEEEEEEcC-----CcEEEEeCCCCcEEEEe
Q 005352 367 YLLSASIDK------TVRLWRVGNDHCLRVFPH--SNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 367 ~l~s~s~dg------~I~iWd~~~~~~~~~~~h--~~~V~~l~f~p~~~~~l~sgs~d-----g~v~iwd~~~~~~~~~~ 433 (701)
.++.|+.++ .+..||..+.+....-.. ...-.+++. - ++.+++.|+.+ ..+..||..+.+-....
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV-F-NNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE-E-CCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 556665442 577888887765432221 111112222 2 67778888765 34778888776543322
Q ss_pred cCCCcE--EEEEEeeCCCeEEEEecC------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE
Q 005352 434 DIRQIV--TAVCYRPDGQGGIVGSMM------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 434 ~~~~~i--~~i~~sp~g~~l~~gs~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
....+. .++ ..-+++..+.|+.. ..+..||+.+++......+ .... .. .++... ++.+++.|
T Consensus 375 ~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-----p~~r-~~-~~~~~~--~~~iyv~G 444 (534)
T PHA03098 375 PLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL-----PISH-YG-GCAIYH--DGKIYVIG 444 (534)
T ss_pred CcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC-----Cccc-cC-ceEEEE--CCEEEEEC
Confidence 211111 112 22356667777632 4588899887765432111 0000 11 112222 45677777
Q ss_pred ECC--------CcEEEEeCCcccee-eeccc-CCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCC
Q 005352 506 CAD--------SQVRILQGPNVIGK-YKGLR-RSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGH 561 (701)
Q Consensus 506 s~d--------g~I~iwd~~~~~~~-~~~~~-~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~ 561 (701)
+.+ ..+.+||..+..-. ..... .......+. .+++.++.|+.+ ..|.+||..+.
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 643 23778887642211 11110 111111122 266666777654 35677776554
No 398
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.53 E-value=7.1 Score=40.79 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=40.4
Q ss_pred CCeeEEEEecC------CCCEEEEEECCCcEEEEeCCccce---eeec-ccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 487 KRITGFQFLPQ------DSSKVMVSCADSQVRILQGPNVIG---KYKG-LRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 487 ~~i~~l~~~p~------~~~~l~~~s~dg~I~iwd~~~~~~---~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
..++++.|... .+.++++.-..+.|....+..... .... ......+..+++.|||.+.++...+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 56777777652 234555555567777776642211 1111 12334799999999999988888888875
No 399
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.51 E-value=1.6 Score=49.13 Aligned_cols=184 Identities=13% Similarity=0.142 Sum_probs=103.0
Q ss_pred eEEEEECC------CcEEEEECCCCeeeeee--cCCCCeEEEEEeeCCCCEEEEEEcC------CcEEEEeCCCCcEEEE
Q 005352 367 YLLSASID------KTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVVDW 432 (701)
Q Consensus 367 ~l~s~s~d------g~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~~~~~l~sgs~d------g~v~iwd~~~~~~~~~ 432 (701)
.++.|+.+ ..+..+|..+++..... .....-.++++. ++.++++|+.| ..+..||..+.+-...
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 56666666 36888998887544433 344445566665 57888999988 3477888887764332
Q ss_pred ecCCCcEEEEEE-eeCCCeEEEEecCCc-----EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE
Q 005352 433 VDIRQIVTAVCY-RPDGQGGIVGSMMGD-----CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 433 ~~~~~~i~~i~~-sp~g~~l~~gs~dg~-----v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s 506 (701)
......-..... .-+|...++|+.||. +..||..+++......+. ....+.....-++.+.++|+
T Consensus 365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~---------~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML---------TRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC---------cceeeeEEEEECCEEEEEcC
Confidence 222222111211 226778888988865 778888887654322111 12233333333678888888
Q ss_pred CCC------cEEEEeCCccceeeecccCC-CCeEEEEEecCCCEEEEEeCCCc-----EEEEeCCCCC
Q 005352 507 ADS------QVRILQGPNVIGKYKGLRRS-GNQLSACFTSDGKHIVSAGEDSN-----VYMWNCIGHE 562 (701)
Q Consensus 507 ~dg------~I~iwd~~~~~~~~~~~~~~-~~v~~l~~s~dg~~l~sgs~Dg~-----I~iWd~~~~~ 562 (701)
.++ .+..||..+..-.....-.. ..-..++ .-++...+.||.|+. |..||..+.+
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 654 35667755322211111011 1111122 236677778887763 5667765544
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.46 E-value=0.12 Score=36.32 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=29.0
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 528 RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 528 ~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
....|..++|+|...+||.++.||.|.+|.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34578999999999999999999999999993
No 401
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.40 E-value=2.4 Score=45.33 Aligned_cols=147 Identities=14% Similarity=0.075 Sum_probs=92.3
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCc-----EEEEecCCCcEEEEEEee-----CCCeEEEEecCCcEEEEECCCCe------
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCH-----VVDWVDIRQIVTAVCYRP-----DGQGGIVGSMMGDCRFYNVSDNH------ 469 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~-----~~~~~~~~~~i~~i~~sp-----~g~~l~~gs~dg~v~i~d~~~~~------ 469 (701)
+...+++|+..|.++||+..... ++-......+|..+.... +...|++ -.-..+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 45689999999999999986543 334445678888887653 2234444 556788899883221
Q ss_pred --eeeeeeEEeecccCCCCCCeeEEEEecC----CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCE
Q 005352 470 --LELDAEICVHSKKKAPCKRITGFQFLPQ----DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKH 543 (701)
Q Consensus 470 --~~~~~~~~~~~~~~~~~~~i~~l~~~p~----~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 543 (701)
..+..... +. . ......+++-|. +..++.+-+.||.+.+|+-........... .--.-.+++.+.-..
T Consensus 115 ~~~~L~~~ye-h~-l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDs 188 (418)
T PF14727_consen 115 NQYQLELIYE-HS-L---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDS 188 (418)
T ss_pred cEEEEEEEEE-Ee-c---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCE
Confidence 11111111 11 1 122333444332 247888899999999999876543333221 222234678888889
Q ss_pred EEEEeCCCcEEEEeCC
Q 005352 544 IVSAGEDSNVYMWNCI 559 (701)
Q Consensus 544 l~sgs~Dg~I~iWd~~ 559 (701)
+++++.+..+.-|++.
T Consensus 189 fvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 189 FVTASSSWTLECYKYQ 204 (418)
T ss_pred EEEecCceeEEEecHH
Confidence 9999999999999864
No 402
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.38 E-value=9 Score=41.41 Aligned_cols=194 Identities=10% Similarity=0.030 Sum_probs=101.0
Q ss_pred eEEEEEecCC-eEE-EEECCC----cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCC-----------cE
Q 005352 357 ILDLSWSKNN-YLL-SASIDK----TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG-----------KV 419 (701)
Q Consensus 357 I~~l~~s~~~-~l~-s~s~dg----~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg-----------~v 419 (701)
+..++++|++ +++ +.+..| .|++.|+.+++.+...-.......+.|.+ +++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeC-CCCEEEEEEeCcccccccCCCCcEE
Confidence 4467889999 444 445555 49999999998765431112223499999 777766655433 37
Q ss_pred EEEeCCCCcEE--EEe-c-CCCc-EEEEEEeeCCCeEEEEecC----CcEEEEECCCC---eeeeeeeEEeecccCCCCC
Q 005352 420 RIWAVLSCHVV--DWV-D-IRQI-VTAVCYRPDGQGGIVGSMM----GDCRFYNVSDN---HLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 420 ~iwd~~~~~~~--~~~-~-~~~~-i~~i~~sp~g~~l~~gs~d----g~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~ 487 (701)
+.|.+.+...- .++ . .... ...+..++++++|++.... ..+.+.++... ..... .+.. ...
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~---~l~~----~~~ 277 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK---LLSP----RED 277 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE---EEEE----SSS
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE---EEeC----CCC
Confidence 88888766421 222 2 2222 6788899999998875443 34777777764 11110 1111 111
Q ss_pred CeeEEEEecCCCCEEEEEEC---CCcEEEEeCCccce---eeecccCCCCeEEEEEecCCCEEEE-EeCCC--cEEEEeC
Q 005352 488 RITGFQFLPQDSSKVMVSCA---DSQVRILQGPNVIG---KYKGLRRSGNQLSACFTSDGKHIVS-AGEDS--NVYMWNC 558 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~---dg~I~iwd~~~~~~---~~~~~~~~~~v~~l~~s~dg~~l~s-gs~Dg--~I~iWd~ 558 (701)
.+....-.. ++.+++.+.. .+.|.-.++..... ......+...+.-..+...+.+|+. ...++ .|+++++
T Consensus 278 ~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 278 GVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp S-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred ceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEEC
Confidence 222222222 3334443322 46677777765442 1122234443333334444545544 44444 5888888
Q ss_pred C
Q 005352 559 I 559 (701)
Q Consensus 559 ~ 559 (701)
.
T Consensus 357 ~ 357 (414)
T PF02897_consen 357 D 357 (414)
T ss_dssp T
T ss_pred C
Confidence 7
No 403
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.33 E-value=8.8 Score=41.07 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=53.9
Q ss_pred EEEEecCC-eEEEEECCCcEEE---EECCC-----Ceeeeee----cCC--CCeEEEEEeeC----------CCCEEEEE
Q 005352 359 DLSWSKNN-YLLSASIDKTVRL---WRVGN-----DHCLRVF----PHS--NYVTCVHFNPV----------DDNYFISG 413 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~i---Wd~~~-----~~~~~~~----~h~--~~V~~l~f~p~----------~~~~l~sg 413 (701)
.++.+|++ .|+.+..+..+.+ |+... +...... .+. ..|+++.+-|. +...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 34667777 7777766666555 54311 1111111 132 57888887763 35789999
Q ss_pred EcCCcEEEEeCCCCcEEEEecCCCcEEEEEEee
Q 005352 414 SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP 446 (701)
Q Consensus 414 s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp 446 (701)
..+|.|++|......+....-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 999999999874433334444667777766543
No 404
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.29 E-value=6.1 Score=39.10 Aligned_cols=196 Identities=10% Similarity=0.085 Sum_probs=101.4
Q ss_pred EEEcCCccCeEEEEEecCC-eEEEEECC-----CcEEEEECCCC-eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcE
Q 005352 348 HEFHGHSGEILDLSWSKNN-YLLSASID-----KTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKV 419 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~-~l~s~s~d-----g~I~iWd~~~~-~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v 419 (701)
..|.||. .|||+| +|++.-.| |.|-|||.+.+ +.+..+. |.-....+.+.+ |+..++.+. |-|
T Consensus 113 RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvan--GGI 183 (366)
T COG3490 113 RHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVAN--GGI 183 (366)
T ss_pred ceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec-CCcEEEEeC--Cce
Confidence 4566774 589999 55544333 67999998754 3344444 555667788888 998888764 333
Q ss_pred E--------------------EEeCCCCcEEEEec-----CCCcEEEEEEeeCCCeEEEEecCCcEE-----EEECCCCe
Q 005352 420 R--------------------IWAVLSCHVVDWVD-----IRQIVTAVCYRPDGQGGIVGSMMGDCR-----FYNVSDNH 469 (701)
Q Consensus 420 ~--------------------iwd~~~~~~~~~~~-----~~~~i~~i~~sp~g~~l~~gs~dg~v~-----i~d~~~~~ 469 (701)
. +.|..++.++.... +.-.|..++..+||..++.+-..|.-. +=-...++
T Consensus 184 ethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~ 263 (366)
T COG3490 184 ETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGE 263 (366)
T ss_pred ecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCC
Confidence 3 33434444442221 223466777777776554433222100 00000000
Q ss_pred eeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeC
Q 005352 470 LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
...-.. ..........+.|-+++.+..++...+++-..+...+||..+........ -.....+ -+.+.-++..+.
T Consensus 264 ~l~~~~-~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~--l~daaGv--a~~~~gf~vssg 338 (366)
T COG3490 264 PLEFLD-LPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA--LPDAAGV--AAAKGGFAVSSG 338 (366)
T ss_pred cCcccC-CCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc--ccccccc--eeccCceEEecC
Confidence 000000 00000111224567788877555555555567778889987654433221 1111222 233344566667
Q ss_pred CCcEEEEe
Q 005352 550 DSNVYMWN 557 (701)
Q Consensus 550 Dg~I~iWd 557 (701)
+|.+.++.
T Consensus 339 ~G~~~~~s 346 (366)
T COG3490 339 QGRIIFYS 346 (366)
T ss_pred CceEEecc
Confidence 89998884
No 405
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.25 E-value=11 Score=43.96 Aligned_cols=198 Identities=11% Similarity=0.061 Sum_probs=111.9
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCCe---------EEEEEee---------------CCCCEEEEEEcCCcEE
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYV---------TCVHFNP---------------VDDNYFISGSIDGKVR 420 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V---------~~l~f~p---------------~~~~~l~sgs~dg~v~ 420 (701)
++.|+.++.++.|.-.|..+++.+..+.....+ ..+.+.. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457777888899999999999998888633221 2233321 1234788888899999
Q ss_pred EEeCCCCcEEEEecCCCcEE-------------EEEEee--CCCeEEEEec----------CCcEEEEECCCCeeeeeee
Q 005352 421 IWAVLSCHVVDWVDIRQIVT-------------AVCYRP--DGQGGIVGSM----------MGDCRFYNVSDNHLELDAE 475 (701)
Q Consensus 421 iwd~~~~~~~~~~~~~~~i~-------------~i~~sp--~g~~l~~gs~----------dg~v~i~d~~~~~~~~~~~ 475 (701)
-.|..+++.+..+...+.+. .+.-.| .+..+++|+. +|.|+-||..++++.....
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999998885544333221 111112 2346666643 6889999999999876544
Q ss_pred EEeecccC----------CCCCCeeEEEEecCCCCEEEEEEC------------------CCcEEEEeCCccceeeeccc
Q 005352 476 ICVHSKKK----------APCKRITGFQFLPQDSSKVMVSCA------------------DSQVRILQGPNVIGKYKGLR 527 (701)
Q Consensus 476 ~~~~~~~~----------~~~~~i~~l~~~p~~~~~l~~~s~------------------dg~I~iwd~~~~~~~~~~~~ 527 (701)
........ .....-...++.+ ...+++.+.. .+.|.-.|..+.+.+.....
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 21110000 0001112234444 2223333221 23344445554444433211
Q ss_pred --CC-------CCeEEEEEec-CCC---EEEEEeCCCcEEEEeCCCCCC
Q 005352 528 --RS-------GNQLSACFTS-DGK---HIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 528 --~~-------~~v~~l~~s~-dg~---~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
|. ....-+.+.. +|+ .++.++.+|.+++.|-++++.
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 11 1111122322 553 889999999999999999875
No 406
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.14 E-value=9.6 Score=40.78 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=45.1
Q ss_pred CCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc--eeeecccCCCCeEEEEEecC----------------CC-EEEEE
Q 005352 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI--GKYKGLRRSGNQLSACFTSD----------------GK-HIVSA 547 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~s~d----------------g~-~l~sg 547 (701)
..+.+++.+| .+.+.++...=|.|.++|+.... ..+++.+...--.--...+. .. +++-+
T Consensus 308 R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 4578899999 57888887778999999987533 33333221100000000000 11 23445
Q ss_pred eCCCcEEEEeCCCCC
Q 005352 548 GEDSNVYMWNCIGHE 562 (701)
Q Consensus 548 s~Dg~I~iWd~~~~~ 562 (701)
-.-|.|-||.+.++.
T Consensus 387 prRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 387 PRRGILEVWSMRQGP 401 (415)
T ss_pred ccCCeEEEEecCCCC
Confidence 678999999998886
No 407
>PHA02790 Kelch-like protein; Provisional
Probab=93.43 E-value=4.7 Score=44.56 Aligned_cols=180 Identities=8% Similarity=0.066 Sum_probs=89.1
Q ss_pred eEEEEECCC-----cEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcC--CcEEEEeCCCCcEEEEecCCC
Q 005352 367 YLLSASIDK-----TVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID--GKVRIWAVLSCHVVDWVDIRQ 437 (701)
Q Consensus 367 ~l~s~s~dg-----~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~d--g~v~iwd~~~~~~~~~~~~~~ 437 (701)
.++.|+.++ ++..||..+++....-. ....-.+++. - ++.+.+.|+.+ ..+..||..+.+-........
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 566676543 57778888776544322 1111112222 2 67777888754 357888877664433322222
Q ss_pred cEEE-EEEeeCCCeEEEEecCC---cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 438 IVTA-VCYRPDGQGGIVGSMMG---DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 438 ~i~~-i~~sp~g~~l~~gs~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
+... ....-+|+..++|+.++ .+..||..++.......+.. +......+.+ ++.+.+.|+ .+.+
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~------~r~~~~~~~~---~~~IYv~GG---~~e~ 419 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY------PHYKSCALVF---GRRLFLVGR---NAEF 419 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC------ccccceEEEE---CCEEEEECC---ceEE
Confidence 2211 12233677777777653 47789988776543221110 1111111122 456666663 4667
Q ss_pred EeCCccceee-ecccC-CCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCC
Q 005352 514 LQGPNVIGKY-KGLRR-SGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGHE 562 (701)
Q Consensus 514 wd~~~~~~~~-~~~~~-~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~~ 562 (701)
||..+..-.. ..... .... +++ .-+|+..+.||.+ ..|..||..+++
T Consensus 420 ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 420 YCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 8765322111 11111 1111 222 2366777777754 346677766543
No 408
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.42 E-value=9.1 Score=38.13 Aligned_cols=200 Identities=14% Similarity=0.147 Sum_probs=118.3
Q ss_pred EEcCCc-cCeEEEEEecCC-eEEEEECCCcEEEEECC---CCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe
Q 005352 349 EFHGHS-GEILDLSWSKNN-YLLSASIDKTVRLWRVG---NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (701)
Q Consensus 349 ~~~~h~-~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~---~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd 423 (701)
.+.+|- ..|..+.....- ++..|-.--.+-+|+.. ....+..+...+-+..+.++ +++...+..+.-++|.|
T Consensus 36 ~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvD 112 (370)
T COG5276 36 AYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVS---EEYVYVADWSSGLRIVD 112 (370)
T ss_pred EEeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEec---ccEEEEEcCCCceEEEe
Confidence 344565 445555443322 22222111123345544 22334444566777888885 46777777788899999
Q ss_pred CCCCcEEEE---ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCC
Q 005352 424 VLSCHVVDW---VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (701)
Q Consensus 424 ~~~~~~~~~---~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~ 500 (701)
+.+...-.. ....+-. -.|.-.|++..++..+.-+.++|+.+..... +..........-..++. .++
T Consensus 113 IS~P~sP~~~~~lnt~gya--ygv~vsGn~aYVadlddgfLivdvsdpssP~-----lagrya~~~~d~~~v~I---SGn 182 (370)
T COG5276 113 ISTPDSPTLIGFLNTDGYA--YGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ-----LAGRYALPGGDTHDVAI---SGN 182 (370)
T ss_pred ccCCCCcceeccccCCceE--EEEEecCCEEEEeeccCcEEEEECCCCCCce-----eeeeeccCCCCceeEEE---ecC
Confidence 987653332 2332333 3444568899999977788899998764322 11111112222234444 357
Q ss_pred EEEEEECCCcEEEEeCCcc-ceeeecccCCC-CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 501 KVMVSCADSQVRILQGPNV-IGKYKGLRRSG-NQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 501 ~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~-~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+...+..|+-+.|.|+.+. ..++.++...+ .+.++..+++..+++... --+.+-|..+.+.
T Consensus 183 ~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~ss 245 (370)
T COG5276 183 YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGPSS 245 (370)
T ss_pred eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCCCCC
Confidence 7788889999999998754 34555554445 788888888776666654 3477777777663
No 409
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.33 E-value=4.3 Score=35.51 Aligned_cols=107 Identities=12% Similarity=0.125 Sum_probs=73.5
Q ss_pred EEecCC-eEEEEECCCcEEEEECCC--------CeeeeeecCCCCeEEEEEeeC----CCCEEEEEEcCCcEEEEeCCCC
Q 005352 361 SWSKNN-YLLSASIDKTVRLWRVGN--------DHCLRVFPHSNYVTCVHFNPV----DDNYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 361 ~~s~~~-~l~s~s~dg~I~iWd~~~--------~~~~~~~~h~~~V~~l~f~p~----~~~~l~sgs~dg~v~iwd~~~~ 427 (701)
+|.... .|+.++.-|.|.|++... ...+..+.....|++|+-.+. ....|+.|+ ...|..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 343344 788888889999998763 345667778888999976652 355677776 567999999988
Q ss_pred cEEEEecCCCcEEEEEEee----CCCeEEEEecCCcEEEEECCCCe
Q 005352 428 HVVDWVDIRQIVTAVCYRP----DGQGGIVGSMMGDCRFYNVSDNH 469 (701)
Q Consensus 428 ~~~~~~~~~~~i~~i~~sp----~g~~l~~gs~dg~v~i~d~~~~~ 469 (701)
.-+........+.++.+-. ....+++| .+-.|.-||....+
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE 128 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence 7776667778888888754 23344444 34556666665544
No 410
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=3.7 Score=43.16 Aligned_cols=72 Identities=18% Similarity=0.304 Sum_probs=51.5
Q ss_pred eeeecCc-cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC
Q 005352 207 ERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (701)
Q Consensus 207 ~~~~~~~-~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~ 282 (701)
+.+-+++ +..+++...|.+.=|-.+..+.+....+. ...+|+|.+++||+|.+.||.--.|+.|.+++....
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfd----m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFD----MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceee----ecCCCceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence 3444444 45667777777888877655544332222 125779999999999999999999999999997543
No 411
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.26 E-value=14 Score=41.44 Aligned_cols=194 Identities=13% Similarity=0.094 Sum_probs=111.1
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCC--eE---E-------EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNY--VT---C-------VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~--V~---~-------l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
++.++.++.++.|.-.|..+++.+..+..... +. + +++ .+..++.++.|+.|.-.|..+++.+-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 55777788888999999999999888763221 11 1 222 234677788899999999999988743
Q ss_pred ecCCC-----cEEEEEEeeCCCeEEEEec------CCcEEEEECCCCeeeeeeeEEeeccc-------------------
Q 005352 433 VDIRQ-----IVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKK------------------- 482 (701)
Q Consensus 433 ~~~~~-----~i~~i~~sp~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~~~~~~~~------------------- 482 (701)
..... .+++.-.--++ .++++.. +|.|.-+|..+++.............
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 32211 12111111133 5556543 68999999999987655433211100
Q ss_pred -----CCCCCCeeEEEEecCCCCEEEEEECC-----C-----------cEEEEeCCccceeeec--ccCC-------CCe
Q 005352 483 -----KAPCKRITGFQFLPQDSSKVMVSCAD-----S-----------QVRILQGPNVIGKYKG--LRRS-------GNQ 532 (701)
Q Consensus 483 -----~~~~~~i~~l~~~p~~~~~l~~~s~d-----g-----------~I~iwd~~~~~~~~~~--~~~~-------~~v 532 (701)
......-..+.+.| ...+++.+..+ + .|.-.|.++.+.+... ..|. ...
T Consensus 225 ~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 00001112235555 34455555422 2 3444565554444322 2221 111
Q ss_pred EEEEEecCCC---EEEEEeCCCcEEEEeCCCCCC
Q 005352 533 LSACFTSDGK---HIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 533 ~~l~~s~dg~---~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.-+.+..+|+ .++.+..+|.+++.|-.+++.
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 2223334676 788999999999999999874
No 412
>PHA02713 hypothetical protein; Provisional
Probab=93.16 E-value=4.2 Score=45.85 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=51.6
Q ss_pred cEEEEECCCCeeeeeecCCCC--eEEEEEeeCCCCEEEEEEcC------CcEEEEeCCCCcEEEEecCCCcE-EEEEEee
Q 005352 376 TVRLWRVGNDHCLRVFPHSNY--VTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVVDWVDIRQIV-TAVCYRP 446 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~h~~~--V~~l~f~p~~~~~l~sgs~d------g~v~iwd~~~~~~~~~~~~~~~i-~~i~~sp 446 (701)
.+..||..+++....-..+.+ -.+++.. ++.+++.|+.+ ..+..||..+..-........+- ......-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 567788877654332221111 1223332 67777888754 34778898776543322221111 1112233
Q ss_pred CCCeEEEEecCC-----cEEEEECCCCeee
Q 005352 447 DGQGGIVGSMMG-----DCRFYNVSDNHLE 471 (701)
Q Consensus 447 ~g~~l~~gs~dg-----~v~i~d~~~~~~~ 471 (701)
+|+..++|+.++ .+..||..++...
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 677778887754 3788999887654
No 413
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.90 E-value=0.31 Score=46.34 Aligned_cols=101 Identities=14% Similarity=0.073 Sum_probs=63.5
Q ss_pred eEEEEECCCcEEEEECCCCeeee-eec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec-CC-CcEEEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLR-VFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-IR-QIVTAV 442 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~-~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~-~~i~~i 442 (701)
.++.|+.+|.|.+|+........ .+. ....|-++--.-.++.+..+++.||.|+.|++.-.+.+.... |. .++...
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 78999999999999886321111 111 223343433332255689999999999999999888775554 33 344444
Q ss_pred EEeeCCCeEEEE--ecCCcEEEEECCC
Q 005352 443 CYRPDGQGGIVG--SMMGDCRFYNVSD 467 (701)
Q Consensus 443 ~~sp~g~~l~~g--s~dg~v~i~d~~~ 467 (701)
.....++.+..+ +.+..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 444455555555 6666666666653
No 414
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.39 E-value=5.8 Score=37.87 Aligned_cols=146 Identities=9% Similarity=0.059 Sum_probs=80.6
Q ss_pred CEEEEEEcCCcEEEEeCCC--CcEEEEecCCCcEEEEEEeeCCCeEEEEecC---C---cEEEEE---CC-CCeeeeeee
Q 005352 408 NYFISGSIDGKVRIWAVLS--CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---G---DCRFYN---VS-DNHLELDAE 475 (701)
Q Consensus 408 ~~l~sgs~dg~v~iwd~~~--~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d---g---~v~i~d---~~-~~~~~~~~~ 475 (701)
+.|+.+...+.|.+|++.. .+....+..-+.|..+.++..|+++++--.+ . .+|+|- .. .........
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 4444446678899999983 3455566666899999999999999985332 2 566652 21 111111100
Q ss_pred EEe---------------ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce-----ee-ec------ccC
Q 005352 476 ICV---------------HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG-----KY-KG------LRR 528 (701)
Q Consensus 476 ~~~---------------~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~-----~~-~~------~~~ 528 (701)
+.- .-...+....+.+++.+|..|++++ |+ ++++.+|.+..... .+ .. +..
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 000 0001122346788999996666554 33 45788887653222 01 11 111
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 529 SGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 529 ~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.-.+..++|. +.|+|..+. -.+++..+
T Consensus 187 ~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred CceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence 1224455553 558888764 46777654
No 415
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.35 E-value=0.016 Score=64.53 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=34.3
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc---CCCEEEEEeCCCcEEEEEeecC
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP---DGQYLASAGDDGVVRLWQVVED 282 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~~Lasgs~Dg~I~iWd~~~~ 282 (701)
-|...||+++--..++..-.....+..-...+.-|.|.| +.-|+..+-.++.|++-++...
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra 215 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA 215 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH
Confidence 366788887654333332222222233334445555554 5567777777888888776554
No 416
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.31 E-value=9.8 Score=37.98 Aligned_cols=147 Identities=18% Similarity=0.111 Sum_probs=85.5
Q ss_pred CeEEEEEeeCCCCEEEEEE---cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEE-CCCCeee
Q 005352 396 YVTCVHFNPVDDNYFISGS---IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN-VSDNHLE 471 (701)
Q Consensus 396 ~V~~l~f~p~~~~~l~sgs---~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d-~~~~~~~ 471 (701)
.+...++++ ++..++... ....++++..... .........++.-+|++++...++...+...+++. ...+...
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999 888776655 2334555544332 22222344788889999987777777666667664 2222211
Q ss_pred eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE---CCCcEEEEeCC---cc-ceee----ec-ccCCCCeEEEEEec
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC---ADSQVRILQGP---NV-IGKY----KG-LRRSGNQLSACFTS 539 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s---~dg~I~iwd~~---~~-~~~~----~~-~~~~~~v~~l~~s~ 539 (701)
. ..+.. ......|+.+.++| ++..++... .++.|.+--+. .. ...+ .. ......+..++|.+
T Consensus 102 ~---~~v~~--~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 102 P---VEVDW--PGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred e---EEecc--cccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 0 01111 00111799999999 566555544 35677775432 11 1111 11 12346889999999
Q ss_pred CCCEEEEEeCCC
Q 005352 540 DGKHIVSAGEDS 551 (701)
Q Consensus 540 dg~~l~sgs~Dg 551 (701)
++.+++.+...+
T Consensus 176 ~~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 DSTLVVLGRSAG 187 (253)
T ss_pred CCEEEEEeCCCC
Confidence 998877765443
No 417
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.25 E-value=15 Score=37.70 Aligned_cols=188 Identities=13% Similarity=0.085 Sum_probs=104.9
Q ss_pred EEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-c---
Q 005352 361 SWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-D--- 434 (701)
Q Consensus 361 ~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~--- 434 (701)
.|.++. .+.+--..+.|.-|+..+++. ..+.+.+.+.++.... .+..|+++. ..+.+++..++..+... .
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 466665 455555678889998876543 3444555556655543 444555543 34677777666552221 1
Q ss_pred --CCCcEEEEEEeeCCCeEEEEec-----------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCE
Q 005352 435 --IRQIVTAVCYRPDGQGGIVGSM-----------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (701)
Q Consensus 435 --~~~~i~~i~~sp~g~~l~~gs~-----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~ 501 (701)
.....+.+...|+|.+.+.... -|.++.++.......+ ...+...-++++|+|++..+
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l---------~~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL---------LDDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe---------ecCcEEecCceEECCCCCEE
Confidence 1134667888899876655433 1334444432111111 11112345789999954444
Q ss_pred EEEEECCCcEEEEeCCc-------cceeeecccCCCCeEEEEEecCCCEEEEEeCCC-cEEEEeCCCCC
Q 005352 502 VMVSCADSQVRILQGPN-------VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDS-NVYMWNCIGHE 562 (701)
Q Consensus 502 l~~~s~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg-~I~iWd~~~~~ 562 (701)
+++=+..+.|.-|+... ....+......+..-.++...+|.+.+++-.+| .|.+|+.+ ++
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~ 245 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK 245 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc
Confidence 44555568888887652 111111111345556677888888776555554 89999987 44
No 418
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.24 E-value=13 Score=37.02 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=85.8
Q ss_pred CeEEEEEecCC-eEEEEE-CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe-CCCCcE---
Q 005352 356 EILDLSWSKNN-YLLSAS-IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA-VLSCHV--- 429 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s-~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd-~~~~~~--- 429 (701)
.+...++++++ .++... .++.-.||-...+...........++.-.|.+ ++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 68889999999 444443 33344444434443333332344778888999 777666666666667663 333322
Q ss_pred -EEEecCCCcEEEEEEeeCCCeEEEEe---cCCcEEEEECCCCeee-eeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 430 -VDWVDIRQIVTAVCYRPDGQGGIVGS---MMGDCRFYNVSDNHLE-LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 430 -~~~~~~~~~i~~i~~sp~g~~l~~gs---~dg~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
+.+......|+.+.++|||..++.-. .++.|.+--+....-- .................++.+.|.+ +..+++.
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~L~V~ 182 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DSTLVVL 182 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CCEEEEE
Confidence 22222223899999999999888766 3477777655422111 0000011111223346789999999 4555555
Q ss_pred EEC
Q 005352 505 SCA 507 (701)
Q Consensus 505 ~s~ 507 (701)
+..
T Consensus 183 ~~~ 185 (253)
T PF10647_consen 183 GRS 185 (253)
T ss_pred eCC
Confidence 544
No 419
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.74 E-value=32 Score=40.26 Aligned_cols=159 Identities=10% Similarity=0.008 Sum_probs=88.9
Q ss_pred CeEEEEECCCcEEEEECCCCeeeeeecCCCCeE-------------EEEEee-CCCCEEEEEEc----------CCcEEE
Q 005352 366 NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVT-------------CVHFNP-VDDNYFISGSI----------DGKVRI 421 (701)
Q Consensus 366 ~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~-------------~l~f~p-~~~~~l~sgs~----------dg~v~i 421 (701)
+.++.++.|+.|.-.|..+++.+..|...+.|. .+.-.| ..+..++.|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 378888889999999999999988776444331 011111 02345666643 688999
Q ss_pred EeCCCCcEEEEecCC----------C--------cE-EEEEEeeCCCeEEEEec------------------CCcEEEEE
Q 005352 422 WAVLSCHVVDWVDIR----------Q--------IV-TAVCYRPDGQGGIVGSM------------------MGDCRFYN 464 (701)
Q Consensus 422 wd~~~~~~~~~~~~~----------~--------~i-~~i~~sp~g~~l~~gs~------------------dg~v~i~d 464 (701)
+|.++++.+-..... + .+ ..++++|....++.+.. .+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999999877322110 0 01 23455555555555332 24455666
Q ss_pred CCCCeeeeeeeEEeecccCC-CCCCeeEEEEecCCC---CEEEEEECCCcEEEEeCCccceeee
Q 005352 465 VSDNHLELDAEICVHSKKKA-PCKRITGFQFLPQDS---SKVMVSCADSQVRILQGPNVIGKYK 524 (701)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~p~~~---~~l~~~s~dg~I~iwd~~~~~~~~~ 524 (701)
.++++.....+...+..-.. ......-+.+...++ ..++.++.+|.++++|-.+.+....
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 66666654443322211100 001111111211133 3788899999999999876655443
No 420
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.58 E-value=7 Score=41.50 Aligned_cols=151 Identities=10% Similarity=0.035 Sum_probs=77.7
Q ss_pred CCeEEEEEeeCCCCEEEEEE-----------cCC-cEEEEeCCC--CcE---EEEecCCCcEEEEEEeeCCCeEEEEecC
Q 005352 395 NYVTCVHFNPVDDNYFISGS-----------IDG-KVRIWAVLS--CHV---VDWVDIRQIVTAVCYRPDGQGGIVGSMM 457 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs-----------~dg-~v~iwd~~~--~~~---~~~~~~~~~i~~i~~sp~g~~l~~gs~d 457 (701)
.....|+|.+ +++++++-. ..+ .|.+++-.+ ++. ..+...-...+.+++.++| |+++...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 4567888988 888777642 123 676665432 222 2223334456889999988 5555544
Q ss_pred CcEEEEECCCCeeee-eeeEEeecccC---CCCCCeeEEEEecCCCCEEEEEECC-------------------CcEEEE
Q 005352 458 GDCRFYNVSDNHLEL-DAEICVHSKKK---APCKRITGFQFLPQDSSKVMVSCAD-------------------SQVRIL 514 (701)
Q Consensus 458 g~v~i~d~~~~~~~~-~~~~~~~~~~~---~~~~~i~~l~~~p~~~~~l~~~s~d-------------------g~I~iw 514 (701)
...++.|........ ..+........ .+......+.|.| ++.+.++-+.. +.|.-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 333344543221111 11111111111 1245577899999 56665554421 334444
Q ss_pred eCCccceeeecccCCCCeEEEEEecCCCEEEEEeCC
Q 005352 515 QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D 550 (701)
+........... .......++|+++|+++++-..+
T Consensus 170 ~pdg~~~e~~a~-G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 170 NPDGGKLRVVAH-GFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ecCCCeEEEEec-CcCCCccceECCCCCEEEEccCC
Confidence 443322222121 23445789999999887765433
No 421
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.17 E-value=0.75 Score=31.36 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=26.6
Q ss_pred CcEEEEEEccCC---CEEEEEeCCCcEEEEEeecC
Q 005352 251 GSILTMKFSPDG---QYLASAGDDGVVRLWQVVED 282 (701)
Q Consensus 251 ~~I~~l~fspdg---~~Lasgs~Dg~I~iWd~~~~ 282 (701)
|+|.+|+|||.. .+|+-+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 579999999853 58888888899999999853
No 422
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.13 E-value=9 Score=43.11 Aligned_cols=112 Identities=13% Similarity=0.179 Sum_probs=74.2
Q ss_pred cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec-CCCCEEEEEECCCcEEEEeC
Q 005352 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP-QDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 438 ~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p-~~~~~l~~~s~dg~I~iwd~ 516 (701)
.++-+.-+.-++..++-+....+.|||.+...+..+..+ .....|.++.|.. .+++.+++.+..+.|.+|--
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-------~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-------SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-------cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 344455555566666665667799999998876544332 3446788888864 26788999999999999853
Q ss_pred C-----c------cceeeecccC-CCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 517 P-----N------VIGKYKGLRR-SGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 517 ~-----~------~~~~~~~~~~-~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
. + ....+....+ ..+|.+..|.++|.+++.++ +.++|++-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 2 1 1122222223 36788999999997666554 57888874
No 423
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.56 E-value=9.6 Score=42.90 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=68.0
Q ss_pred eEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE--EecCCCcEEEEEEe--eCCCeEEEEecCCcEEEEECCC-----
Q 005352 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--WVDIRQIVTAVCYR--PDGQGGIVGSMMGDCRFYNVSD----- 467 (701)
Q Consensus 397 V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~--~~~~~~~i~~i~~s--p~g~~l~~gs~dg~v~i~d~~~----- 467 (701)
++-+.-+. .++.-++-+....+.|||.+.+.... .+...+.|..+.|. |+|+.+++.+....|.+|--..
T Consensus 32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33444443 34444444444579999999887553 33457889999886 5889888888889999886421
Q ss_pred Ce--eeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 468 NH--LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 468 ~~--~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
.. ......+.+ ......+|.+..|.+ ++.+++ |+ ++++.|+|-
T Consensus 111 ~~p~w~~i~~i~i---~~~T~h~Igds~Wl~-~G~LvV-~s-GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDI---SSHTPHPIGDSIWLK-DGTLVV-GS-GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEe---ecCCCCCccceeEec-CCeEEE-Ee-CCEEEEECC
Confidence 11 111111111 122235688899988 444443 33 457888764
No 424
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.16 E-value=24 Score=36.02 Aligned_cols=167 Identities=10% Similarity=0.132 Sum_probs=91.3
Q ss_pred cEEEEECCCCeeeeeec-------CCCCeEEEEEeeCCC----CEE-EEEEcCCcEEEEeCCCCcEEEEecC--------
Q 005352 376 TVRLWRVGNDHCLRVFP-------HSNYVTCVHFNPVDD----NYF-ISGSIDGKVRIWAVLSCHVVDWVDI-------- 435 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~-------h~~~V~~l~f~p~~~----~~l-~sgs~dg~v~iwd~~~~~~~~~~~~-------- 435 (701)
.|.+||+.+++.++.+. ..+.+..+.+...++ .++ ++=...+.|.|+|+.+++..+...+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 68899999999988875 346788888876332 233 3333446799999999875544322
Q ss_pred ------------CCcEEEEEEee---CCCeEEEEecCCcEEEEECCCCeee-----eee----eEEeecccCCCCCCeeE
Q 005352 436 ------------RQIVTAVCYRP---DGQGGIVGSMMGDCRFYNVSDNHLE-----LDA----EICVHSKKKAPCKRITG 491 (701)
Q Consensus 436 ------------~~~i~~i~~sp---~g~~l~~gs~dg~v~i~d~~~~~~~-----~~~----~~~~~~~~~~~~~~i~~ 491 (701)
...+..++.+| +++.|+-....+ -++|.+.+..+. ... .+..... ......+
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~---k~~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGD---KGSQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccc---cCCCCce
Confidence 12244555544 444555443322 123333221110 000 0111111 1134567
Q ss_pred EEEecCCCCEEEEEECCCcEEEEeCCccc-----eee-ecccCCCCeEEEEEec--CCCEEEEE
Q 005352 492 FQFLPQDSSKVMVSCADSQVRILQGPNVI-----GKY-KGLRRSGNQLSACFTS--DGKHIVSA 547 (701)
Q Consensus 492 l~~~p~~~~~l~~~s~dg~I~iwd~~~~~-----~~~-~~~~~~~~v~~l~~s~--dg~~l~sg 547 (701)
+++.+ ++.++++--..+.|..|+..... ..+ .-...-..+..+.+.+ +|.+.+..
T Consensus 191 ~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 191 MAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 78888 78888888889999999987522 122 2111235678888888 66555544
No 425
>PHA03098 kelch-like protein; Provisional
Probab=90.00 E-value=11 Score=42.28 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=54.2
Q ss_pred eEEEEECC-----CcEEEEECCCCeeeeee--cCCCCeEEEEEeeCCCCEEEEEEcC------CcEEEEeCCCCcEEEEe
Q 005352 367 YLLSASID-----KTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 367 ~l~s~s~d-----g~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~~~~~l~sgs~d------g~v~iwd~~~~~~~~~~ 433 (701)
.++.|+.+ ..+..||..+++....- .+...-.+++.. ++.+++.|+.+ ..+..||..+.+-....
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 55556654 34777888776543322 122211222222 66777777732 35888998876543322
Q ss_pred cCCCcE-EEEEEeeCCCeEEEEecC--------CcEEEEECCCCeee
Q 005352 434 DIRQIV-TAVCYRPDGQGGIVGSMM--------GDCRFYNVSDNHLE 471 (701)
Q Consensus 434 ~~~~~i-~~i~~sp~g~~l~~gs~d--------g~v~i~d~~~~~~~ 471 (701)
....+. ...+...++..++.|+.+ ..+.+||..+++..
T Consensus 423 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 423 PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 211111 111223356666777643 23888998887654
No 426
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.62 E-value=20 Score=34.53 Aligned_cols=141 Identities=11% Similarity=0.129 Sum_probs=81.9
Q ss_pred CeEEEEEecCCeEEEEECC----------CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEE-EEEEcCCcEEEEe-
Q 005352 356 EILDLSWSKNNYLLSASID----------KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF-ISGSIDGKVRIWA- 423 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~d----------g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l-~sgs~dg~v~iwd- 423 (701)
...+-..+|+|.++.|.+. |.++.|-.. ++....+..-.--+.++|+. +.+.| ++-+.+-+|.-||
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDS-DAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccc-cCcEEEEEccCceEEeeeec
Confidence 3444556777744544432 345555332 22222223334456788886 55544 4555667787777
Q ss_pred -CCCCcEE------EEec----CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEE
Q 005352 424 -VLSCHVV------DWVD----IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (701)
Q Consensus 424 -~~~~~~~------~~~~----~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l 492 (701)
..++.+. .+.. .....-.+++.-+|+..++.-..++|...|..+++..++..+. ...|+++
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--------t~qitsc 259 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--------TPQITSC 259 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--------CCceEEE
Confidence 5555432 1111 0111334556678888888888899999999999987765443 4669999
Q ss_pred EEecCCCCEEEEEE
Q 005352 493 QFLPQDSSKVMVSC 506 (701)
Q Consensus 493 ~~~p~~~~~l~~~s 506 (701)
+|--.+-..+.+..
T Consensus 260 cFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 260 CFGGKNLDILYVTT 273 (310)
T ss_pred EecCCCccEEEEEe
Confidence 99653334555444
No 427
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.57 E-value=25 Score=35.49 Aligned_cols=204 Identities=15% Similarity=0.130 Sum_probs=112.9
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECC------CC-eeeeeec------CCCCeEEEEEeeCCCC------------E
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVG------ND-HCLRVFP------HSNYVTCVHFNPVDDN------------Y 409 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~------~~-~~~~~~~------h~~~V~~l~f~p~~~~------------~ 409 (701)
.-+.|+++|.+ .-++...-+...+||.. .. ..+..+. .....+.+.|+. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 35789999988 66677777899999986 22 2233333 235688888885 222 3
Q ss_pred EEEEEcCCcEEEEeCCCCcE-----EEEec--CCCcE-EEEEEeeC--CCeEEEE-ecCCcEEEEECCCCeeeeeeeEEe
Q 005352 410 FISGSIDGKVRIWAVLSCHV-----VDWVD--IRQIV-TAVCYRPD--GQGGIVG-SMMGDCRFYNVSDNHLELDAEICV 478 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~-----~~~~~--~~~~i-~~i~~sp~--g~~l~~g-s~dg~v~i~d~~~~~~~~~~~~~~ 478 (701)
|+.++.||+|.-|...-... ....+ ....| ..+++... +.+|+.+ -..++|.+||-.=.+......+.-
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 67788999999997532221 11122 12233 34555443 4455444 457888888865332211100000
Q ss_pred ecccCCCCCCeeEEE---------EecC--CCCEEEEEECCCcEEEEeCC-ccceeeecccCCCCeEEEEEec------C
Q 005352 479 HSKKKAPCKRITGFQ---------FLPQ--DSSKVMVSCADSQVRILQGP-NVIGKYKGLRRSGNQLSACFTS------D 540 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~---------~~p~--~~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~l~~s~------d 540 (701)
.. ......-..++ |..+ +...=+.+..-|.|-+||.. ...+.+.....-.....|+..| .
T Consensus 183 P~--iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 PA--LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CC--CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 00 00001111111 1111 11122233445789999986 4444454444455667777755 4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCC
Q 005352 541 GKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 541 g~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|.+|+--=.||+|..+|..+++
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCeEEeecCCceeEEecCCCCc
Confidence 6677776679999999998876
No 428
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.16 E-value=22 Score=34.30 Aligned_cols=143 Identities=13% Similarity=0.137 Sum_probs=83.0
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcC---------CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEE-EecCCcEEEE
Q 005352 394 SNYVTCVHFNPVDDNYFISGSID---------GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV-GSMMGDCRFY 463 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~d---------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~-gs~dg~v~i~ 463 (701)
....+.-..+| ++++++-.-.| |.++.|-.. +++......-..-+.++|+.+.+.+.. -+.+-.|.-|
T Consensus 108 knR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCC-CCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 45566677788 88885432222 445555332 233333333445567889887766554 4556667667
Q ss_pred E--CCCCeeeeeeeEE-eecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEec
Q 005352 464 N--VSDNHLELDAEIC-VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTS 539 (701)
Q Consensus 464 d--~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 539 (701)
| ..++.......+. +............++++.. ++.+.++.-..++|..+|..+.+......-....|+++||--
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 7 5555433222111 1111111111123344444 678888888899999999987766655555688899999953
No 429
>PHA02790 Kelch-like protein; Provisional
Probab=88.89 E-value=29 Score=38.42 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=53.9
Q ss_pred CC-eEEEEECC--CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCC---cEEEEeCCCCcEEEEecCC
Q 005352 365 NN-YLLSASID--KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG---KVRIWAVLSCHVVDWVDIR 436 (701)
Q Consensus 365 ~~-~l~s~s~d--g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg---~v~iwd~~~~~~~~~~~~~ 436 (701)
++ ..+.|+.+ ..+..||..+++-...-. ....-.+++.. ++.+.+.|+.++ .+..||..+.+-.......
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 45 55555543 457888877664433222 21111122222 677888887654 4678888776543322211
Q ss_pred CcEE-EEEEeeCCCeEEEEecCCcEEEEECCCCeee
Q 005352 437 QIVT-AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 437 ~~i~-~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
.+.. ..+..-+++..++| |.+.+||..+++..
T Consensus 396 ~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~ 428 (480)
T PHA02790 396 YPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWT 428 (480)
T ss_pred CccccceEEEECCEEEEEC---CceEEecCCCCcEe
Confidence 1111 11223456666666 45788999887664
No 430
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.45 E-value=14 Score=32.48 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=65.9
Q ss_pred EEEEeeCCCCEEEEEEcCCcEEEEeCCCC--------cEEEEecCCCcEEEEEEee-----CCCeEEEEecCCcEEEEEC
Q 005352 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSC--------HVVDWVDIRQIVTAVCYRP-----DGQGGIVGSMMGDCRFYNV 465 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~dg~v~iwd~~~~--------~~~~~~~~~~~i~~i~~sp-----~g~~l~~gs~dg~v~i~d~ 465 (701)
.-.|.. ....|++++.-|+|.|++.... ..+..+.....|++++-.+ ....|++|+. ..+..||+
T Consensus 3 iGkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 345655 4557888888999999987633 3456777888899987665 2456666665 67999999
Q ss_pred CCCeeeeeeeEEeecccCCCCCCeeEEEEecC--CCCEEEEEECCCcEEEEeC
Q 005352 466 SDNHLELDAEICVHSKKKAPCKRITGFQFLPQ--DSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~--~~~~l~~~s~dg~I~iwd~ 516 (701)
..+.-..... ....+.++.+-.- ...-++..+.+..|.-||.
T Consensus 81 ~~N~d~Fyke---------~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 81 ENNSDLFYKE---------VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY 124 (136)
T ss_pred ccCchhhhhh---------CccceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence 8876443221 1244555555321 1233444444445555553
No 431
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.42 E-value=20 Score=40.84 Aligned_cols=109 Identities=10% Similarity=0.047 Sum_probs=74.2
Q ss_pred CeEEEEEecCC---eEEEEECCCcEEEEECCC-------C-------------eeeeeecCCCCeEEEEEe--eCCCCEE
Q 005352 356 EILDLSWSKNN---YLLSASIDKTVRLWRVGN-------D-------------HCLRVFPHSNYVTCVHFN--PVDDNYF 410 (701)
Q Consensus 356 ~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~-------~-------------~~~~~~~h~~~V~~l~f~--p~~~~~l 410 (701)
.|..|....=+ .|+.|..||.|.+|.+++ . ++...+.....+++++++ . ..++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEE
Confidence 45555554433 899999999999996521 0 112223356678999998 6 67788
Q ss_pred EEEEcCCcEEEEeCCC--CcEE--EEecCCCcEEEEEEeeCC---C---eEEEEecCCcEEEEEC
Q 005352 411 ISGSIDGKVRIWAVLS--CHVV--DWVDIRQIVTAVCYRPDG---Q---GGIVGSMMGDCRFYNV 465 (701)
Q Consensus 411 ~sgs~dg~v~iwd~~~--~~~~--~~~~~~~~i~~i~~sp~g---~---~l~~gs~dg~v~i~d~ 465 (701)
|+++....|.||-... .+.. ....+...|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888777888875543 2211 223466779999998743 2 6778888999999887
No 432
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.34 E-value=7.8 Score=41.42 Aligned_cols=148 Identities=15% Similarity=0.097 Sum_probs=88.7
Q ss_pred CCCEEE-EEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCC-------eEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 406 DDNYFI-SGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ-------GGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 406 ~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~-------~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
+.++|+ .|.....++-.|+..|+++........+ -+.|.|..+ .-++|-.+..|.-.|.+-..... .
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi----~ 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI----K 552 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCce----e
Confidence 444444 4555567888899999999666555555 678888532 23445555555555554322111 1
Q ss_pred eeccc-CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 478 VHSKK-KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 478 ~~~~~-~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
....+ -.......+..- ....++++++..|-|++||--....+-........|..+..+.+|++|++.+. ..+.+-
T Consensus 553 v~esKdY~tKn~Fss~~t--TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~ 629 (776)
T COG5167 553 VVESKDYKTKNKFSSGMT--TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLT 629 (776)
T ss_pred eeeehhcccccccccccc--ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEE
Confidence 11101 011111222211 25689999999999999995433333333345678899999999999887764 577777
Q ss_pred eCCCC
Q 005352 557 NCIGH 561 (701)
Q Consensus 557 d~~~~ 561 (701)
|+.-.
T Consensus 630 d~~ik 634 (776)
T COG5167 630 DVPIK 634 (776)
T ss_pred ecccc
Confidence 76543
No 433
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.59 E-value=1.7 Score=29.63 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=26.6
Q ss_pred CCeEEEEEeeCCC--CEEEEEEcCCcEEEEeCCC
Q 005352 395 NYVTCVHFNPVDD--NYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 395 ~~V~~l~f~p~~~--~~l~sgs~dg~v~iwd~~~ 426 (701)
+.|.++.|+|... .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998444 6888888889999999985
No 434
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.56 E-value=36 Score=34.85 Aligned_cols=189 Identities=12% Similarity=0.107 Sum_probs=88.4
Q ss_pred eEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--
Q 005352 357 ILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-- 430 (701)
Q Consensus 357 I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-- 430 (701)
..+|.|..+..+++ +..+ +.+.....++.-..+. .++....+.... +. ....++..|.|.. ....++.-
T Consensus 64 l~~I~f~~~~g~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~-~~~l~~~~G~iy~-T~DgG~tW~~ 138 (302)
T PF14870_consen 64 LNSISFDGNEGWIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DG-SAELAGDRGAIYR-TTDGGKTWQA 138 (302)
T ss_dssp EEEEEEETTEEEEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TT-EEEEEETT--EEE-ESSTTSSEEE
T ss_pred EEEEEecCCceEEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CC-cEEEEcCCCcEEE-eCCCCCCeeE
Confidence 55667754434443 4444 3334444444333332 233344454444 33 3333444554332 22233321
Q ss_pred EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc
Q 005352 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (701)
Q Consensus 431 ~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~ 510 (701)
........+..+..+++|++++++..-....-||--..... .+ ......+|..+.|.| ++.+.+ ....+.
T Consensus 139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~------~~--~r~~~~riq~~gf~~-~~~lw~-~~~Gg~ 208 (302)
T PF14870_consen 139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ------PH--NRNSSRRIQSMGFSP-DGNLWM-LARGGQ 208 (302)
T ss_dssp EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-E------EE--E--SSS-EEEEEE-T-TS-EEE-EETTTE
T ss_pred cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccce------EE--ccCccceehhceecC-CCCEEE-EeCCcE
Confidence 22334567888899999999988876555567775433221 11 222347899999999 455544 448899
Q ss_pred EEEEeCCccceeeec----c-cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 511 VRILQGPNVIGKYKG----L-RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 511 I~iwd~~~~~~~~~~----~-~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|++=+.......+.. . ...-.+..++|.+++...++|+ .|.+ +...+.++
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGk 263 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGK 263 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTS
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCc
Confidence 998873322222211 1 2334589999999888777665 4433 34445554
No 435
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.52 E-value=15 Score=35.06 Aligned_cols=110 Identities=13% Similarity=0.131 Sum_probs=70.3
Q ss_pred EEEEEecCCeEEEEECCCcEEEEECC--CCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC---C---cEEEE-eCCCC-
Q 005352 358 LDLSWSKNNYLLSASIDKTVRLWRVG--NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---G---KVRIW-AVLSC- 427 (701)
Q Consensus 358 ~~l~~s~~~~l~s~s~dg~I~iWd~~--~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d---g---~v~iw-d~~~~- 427 (701)
..++-...+.|+.+.....|.+|++. ..+.+..|..-+.|..+.++. .|+++++--.+ . .+|+| |.+..
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 34444454444444666789999988 445667787779999999999 89999986432 2 56776 22111
Q ss_pred ---cEE--E---------------------EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCe
Q 005352 428 ---HVV--D---------------------WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (701)
Q Consensus 428 ---~~~--~---------------------~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~ 469 (701)
+.+ . -.....++.+++..|-...|++|+. +++.+|.+....
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~ 166 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQT 166 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEE
Confidence 100 1 1123456788888886556666664 678888876443
No 436
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.30 E-value=15 Score=34.85 Aligned_cols=86 Identities=12% Similarity=0.177 Sum_probs=51.8
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeec---CC---CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-----
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFP---HS---NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI----- 435 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~---h~---~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~----- 435 (701)
.|+.+....+++.-|..+.....+.. .. ..++-+.|- ++.+.+-.-.+..|...+..+++++.++..
T Consensus 142 ~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~ 219 (262)
T COG3823 142 NLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLK 219 (262)
T ss_pred ceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCch
Confidence 56666666677777766654444332 12 233445554 566666665666677778888888876643
Q ss_pred --------CCcEEEEEEeeCCCeEEEE
Q 005352 436 --------RQIVTAVCYRPDGQGGIVG 454 (701)
Q Consensus 436 --------~~~i~~i~~sp~g~~l~~g 454 (701)
....+.|++.|++..++..
T Consensus 220 ~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 220 ELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred hcCccccccccccceeecCcCCeEEEe
Confidence 2346778888877444443
No 437
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.97 E-value=14 Score=42.83 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=53.4
Q ss_pred CcEEEEEEeeCCCeEEEEecCCcEEEEECCC----C-----eeeee-eeEEe--ecccCCCCCCeeEEEEecC--CCCEE
Q 005352 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD----N-----HLELD-AEICV--HSKKKAPCKRITGFQFLPQ--DSSKV 502 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~----~-----~~~~~-~~~~~--~~~~~~~~~~i~~l~~~p~--~~~~l 502 (701)
..|..|.++|+|+.++..+..|.+.+.=.+. + +.... ..+.+ ..........|..+.|+|. ++..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4588999999999999988866544332221 1 11000 01111 1112334567899999995 36899
Q ss_pred EEEECCCcEEEEeCCc
Q 005352 503 MVSCADSQVRILQGPN 518 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~ 518 (701)
++-..|+.+|+||+..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 9999999999999864
No 438
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.72 E-value=4.1 Score=39.64 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=49.3
Q ss_pred CCCEEEEEECCCcEEEEeCCccceeeec------c--------cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 498 DSSKVMVSCADSQVRILQGPNVIGKYKG------L--------RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~~~~~~~~------~--------~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.+.++++.+.+|.+++||+.+....++. . .....|..+.++.+|.-|++-+ +|..+.|+.+-+
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 5788999999999999999875554443 1 3456789999999998888776 588999986544
No 439
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=86.62 E-value=72 Score=37.51 Aligned_cols=68 Identities=12% Similarity=0.008 Sum_probs=49.5
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe----c----------------CCCcEEEEEEeeCCCeEE
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----D----------------IRQIVTAVCYRPDGQGGI 452 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~----~----------------~~~~i~~i~~sp~g~~l~ 452 (701)
....|.+++... -+.+++....||+|.++|-.+-+.+... . .-..+..++|+|++..++
T Consensus 258 ~~~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 258 LNKRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred cCCeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 345677777766 6778999999999999998776444222 1 111334578999999999
Q ss_pred EEecCCcEE
Q 005352 453 VGSMMGDCR 461 (701)
Q Consensus 453 ~gs~dg~v~ 461 (701)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 988888866
No 440
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.54 E-value=4.8 Score=39.19 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=51.6
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE-------e--------cCCCcEEEEEEeeCCCeEEEEecCC
Q 005352 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-------V--------DIRQIVTAVCYRPDGQGGIVGSMMG 458 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~-------~--------~~~~~i~~i~~sp~g~~l~~gs~dg 458 (701)
..++..+. . .++++++...+|.+++||+.+++.+.. . .....|..+.++.+|.-+++-+ +|
T Consensus 12 gs~~~~l~--~-~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 12 GSPVSFLE--C-NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred CCceEEEE--e-CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 34444444 3 678899999999999999998875521 1 2445688888888887766554 58
Q ss_pred cEEEEECCCCe
Q 005352 459 DCRFYNVSDNH 469 (701)
Q Consensus 459 ~v~i~d~~~~~ 469 (701)
..+.|+..-..
T Consensus 88 ~~y~y~~~L~~ 98 (219)
T PF07569_consen 88 DSYSYSPDLGC 98 (219)
T ss_pred CEEEeccccce
Confidence 88888876543
No 441
>PRK13684 Ycf48-like protein; Provisional
Probab=86.09 E-value=25 Score=36.72 Aligned_cols=107 Identities=7% Similarity=0.037 Sum_probs=61.7
Q ss_pred ccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc
Q 005352 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (701)
Q Consensus 354 ~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~ 428 (701)
...++++.+.+++.++..+..|.+++=....+..-.... ....+..+.+.| ++..+++ +.+|.+. .....++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~-G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAG-GGNGTLL-VSKDGGK 290 (334)
T ss_pred cccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEEE-cCCCeEE-EeCCCCC
Confidence 356788888888855555667776543334443322222 123578889988 6665554 4567554 3444444
Q ss_pred EEEEe----cCCCcEEEEEEeeCCCeEEEEecCCcEEEEE
Q 005352 429 VVDWV----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN 464 (701)
Q Consensus 429 ~~~~~----~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d 464 (701)
.-... ......+.+.|..+++.+++| ..|.|..|+
T Consensus 291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 291 TWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYV 329 (334)
T ss_pred CCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEec
Confidence 33222 223457778887776665554 568777665
No 442
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.04 E-value=46 Score=34.51 Aligned_cols=103 Identities=12% Similarity=0.153 Sum_probs=54.6
Q ss_pred eEEEEECC-----CcEEEEECCCCee---eeeec---CCCCeEEEEEeeCCCCEEEEEEcC-----CcEEEEeCCCCcEE
Q 005352 367 YLLSASID-----KTVRLWRVGNDHC---LRVFP---HSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVV 430 (701)
Q Consensus 367 ~l~s~s~d-----g~I~iWd~~~~~~---~~~~~---h~~~V~~l~f~p~~~~~l~sgs~d-----g~v~iwd~~~~~~~ 430 (701)
.++.|+.+ ..+..+|+.+.+. ...+. ....-.+++.. ++++++.|+.. ..+..||+.+.+-.
T Consensus 75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 55556654 3466777766553 12222 11111222222 56777777642 35888898876544
Q ss_pred EEecCC--CcEEEEEEeeCCCeEEEEecCC----cEEEEECCCCeee
Q 005352 431 DWVDIR--QIVTAVCYRPDGQGGIVGSMMG----DCRFYNVSDNHLE 471 (701)
Q Consensus 431 ~~~~~~--~~i~~i~~sp~g~~l~~gs~dg----~v~i~d~~~~~~~ 471 (701)
...... ......+...+++..+.|+.++ .+..||+.+++..
T Consensus 153 ~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 153 ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 332211 1122233344677777777654 3568898887654
No 443
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.80 E-value=48 Score=34.50 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=89.7
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCc------EEEEeCCC-----CcE-----EEEecCCC--------cEEEEEEeeCCCe
Q 005352 395 NYVTCVHFNPVDDNYFISGSIDGK------VRIWAVLS-----CHV-----VDWVDIRQ--------IVTAVCYRPDGQG 450 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~dg~------v~iwd~~~-----~~~-----~~~~~~~~--------~i~~i~~sp~g~~ 450 (701)
+.+..|.+.| ++..+++.+.+|. +..+++.. ..+ ..+....+ ..-+|++.++|.+
T Consensus 20 GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 4567788887 5566777777777 55555443 111 11111111 3447888677777
Q ss_pred EEEEecC------CcEEEEECCCCeeeeeeeEEeec-------ccCCCCCCeeEEEEecCCCCEEEEEEC-----CC--c
Q 005352 451 GIVGSMM------GDCRFYNVSDNHLELDAEICVHS-------KKKAPCKRITGFQFLPQDSSKVMVSCA-----DS--Q 510 (701)
Q Consensus 451 l~~gs~d------g~v~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~i~~l~~~p~~~~~l~~~s~-----dg--~ 510 (701)
+++.-.+ ..|..++.. +.......+.... ........+-+++++| ++..|++... |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECccccCCCccc
Confidence 7666556 678888876 4432222111111 2334567889999999 5665555433 22 1
Q ss_pred -------EEEE--eCCc-c--ce--eeeccc-----CCCCeEEEEEecCCCEEEEEe-----CCCcEEEEeCC
Q 005352 511 -------VRIL--QGPN-V--IG--KYKGLR-----RSGNQLSACFTSDGKHIVSAG-----EDSNVYMWNCI 559 (701)
Q Consensus 511 -------I~iw--d~~~-~--~~--~~~~~~-----~~~~v~~l~~s~dg~~l~sgs-----~Dg~I~iWd~~ 559 (701)
++|+ |..+ . .. .|.... ....+..+.+-+++++|+-=- ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 4554 4433 1 12 222221 356788899999998776431 23445555544
No 444
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.67 E-value=17 Score=39.05 Aligned_cols=139 Identities=14% Similarity=0.202 Sum_probs=82.2
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeC-------CCCEEEEEEcCCcEEEEeCCC-CcEEEEecCCCc
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV-------DDNYFISGSIDGKVRIWAVLS-CHVVDWVDIRQI 438 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~-------~~~~l~sgs~dg~v~iwd~~~-~~~~~~~~~~~~ 438 (701)
.+..++.-..++--|++.|+.+........| -++|.|. +...|+ |-.+..|.-.|.+- +..+.......-
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhc
Confidence 4556666677888899999999888855555 6778771 223344 44455555556543 222222222222
Q ss_pred EEEEEEe----eCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 439 VTAVCYR----PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 439 i~~i~~s----p~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
.+.-.|+ ....++++++..|.|++||--.... ..........|..+.... ++.++++.+.. .+.+.
T Consensus 560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rA--------KtalP~lG~aIk~idvta-~Gk~ilaTCk~-yllL~ 629 (776)
T COG5167 560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRA--------KTALPGLGDAIKHIDVTA-NGKHILATCKN-YLLLT 629 (776)
T ss_pred cccccccccccccCceEEEecCCCceeeehhhcchh--------hhcCcccccceeeeEeec-CCcEEEEeecc-eEEEE
Confidence 2222222 2345899999999999999643221 111233446678888887 67777766653 56666
Q ss_pred eCC
Q 005352 515 QGP 517 (701)
Q Consensus 515 d~~ 517 (701)
|++
T Consensus 630 d~~ 632 (776)
T COG5167 630 DVP 632 (776)
T ss_pred ecc
Confidence 643
No 445
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.21 E-value=62 Score=34.48 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=74.0
Q ss_pred cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
....++|.+|.|++|+ .|+.--.+++|.+.+....+....+. .+..|....|.. ..-++.....| +-+|..
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v 139 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--STEIAFITDQG-IEFYQV 139 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--CeeEEEEecCC-eEEEEE
Confidence 4456799999999999 88888889999999985554443332 234588888985 35555555443 666655
Q ss_pred CC--CcEEEEecCCCcEEEEEEeeCCCeEEEEec--CCcEEEEECCCC
Q 005352 425 LS--CHVVDWVDIRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDN 468 (701)
Q Consensus 425 ~~--~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~ 468 (701)
.. ..+.....+.-.|.-..|.++.+.++.++. .+.+.=+.++++
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 33 222233455667888888888776555443 334444444443
No 446
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.98 E-value=28 Score=39.30 Aligned_cols=194 Identities=11% Similarity=0.117 Sum_probs=95.7
Q ss_pred CeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 356 EILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 356 ~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
...++..+|.. -+. +.--.|+|+++ +|+.+..+. ....+-.+-|+ +...|++...+|++++|++.....-..
T Consensus 45 GpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~ 119 (829)
T KOG2280|consen 45 GPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESN 119 (829)
T ss_pred CceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecchhhhccc
Confidence 34455555544 222 33346888886 455555443 33478889998 456788888999999999865432221
Q ss_pred -e---cCCCcEEEEEEeeCCCeEEEEecCCcEEEEE-CCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC--CEEEEE
Q 005352 433 -V---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN-VSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS--SKVMVS 505 (701)
Q Consensus 433 -~---~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~--~~l~~~ 505 (701)
. .....|.-+.+..+| +++-..+|.+.+-. ........ ..... .....-++....++.. ..++-.
T Consensus 120 svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~-----~~diP-~~~~~~~~Wt~~~~~~~~~~ll~v 191 (829)
T KOG2280|consen 120 SVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRK-----MPDIP-YNELPKSCWTVFQPHRQSTILLDV 191 (829)
T ss_pred ccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhh-----CCCCC-CccCCCcceeEecCCCcceeEEee
Confidence 1 112234444444444 45555556554433 22211110 00000 0001112333222111 111111
Q ss_pred ECCCcEEEEeCCcc-ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 506 CADSQVRILQGPNV-IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 506 s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
...--..++..... ............+..++.||+.++|+-=..+|.|.+-..+..+
T Consensus 192 ~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 192 DVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred chhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence 10000011111111 1111111134678889999999999999999999998876554
No 447
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.93 E-value=84 Score=35.77 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=32.1
Q ss_pred CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee
Q 005352 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (701)
Q Consensus 435 ~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~ 473 (701)
....+..+.++|+.++|+.-+..|.+.+-+.+..+...+
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce 253 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCE 253 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhc
Confidence 346788899999999999999999999988876655443
No 448
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=83.54 E-value=21 Score=37.32 Aligned_cols=112 Identities=19% Similarity=0.204 Sum_probs=58.8
Q ss_pred cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC---CCCEEEEEECC------
Q 005352 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ---DSSKVMVSCAD------ 508 (701)
Q Consensus 438 ~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~---~~~~l~~~s~d------ 508 (701)
..++|+|.|+|+.++ +...|.|++++ ..+... ..................+++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~-~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLK-TPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEEC-EEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCc-ceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 467899999986655 56699999999 444431 1111111223445567899999993 23444444421
Q ss_pred C--cEEEEeCCc-------cceeeecc----cCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 509 S--QVRILQGPN-------VIGKYKGL----RRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 509 g--~I~iwd~~~-------~~~~~~~~----~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
. .|.-|.... ....+... .....-..|.|.|||.+.++.+..+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 2 233232211 11111111 12345567999999977777665443
No 449
>PRK10115 protease 2; Provisional
Probab=83.50 E-value=96 Score=36.08 Aligned_cols=194 Identities=8% Similarity=0.035 Sum_probs=88.7
Q ss_pred EEEEEecCC--eEEEEECC-----CcEEEEECCCC--eeeeeecC-CCCeEEEEEeeCCCCEEEEEEc---CCcEEEEeC
Q 005352 358 LDLSWSKNN--YLLSASID-----KTVRLWRVGND--HCLRVFPH-SNYVTCVHFNPVDDNYFISGSI---DGKVRIWAV 424 (701)
Q Consensus 358 ~~l~~s~~~--~l~s~s~d-----g~I~iWd~~~~--~~~~~~~h-~~~V~~l~f~p~~~~~l~sgs~---dg~v~iwd~ 424 (701)
..++|.+++ .+++...+ ..|..+++.++ +-...+.. .....-..+.+.++.+++..+. ++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 358899887 44443322 36888888887 33444442 2223322233336676655443 356888884
Q ss_pred C--CCcEEEEecCC-CcEEEEEEeeCCCeEEEEecC--Cc--EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 425 L--SCHVVDWVDIR-QIVTAVCYRPDGQGGIVGSMM--GD--CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 425 ~--~~~~~~~~~~~-~~i~~i~~sp~g~~l~~gs~d--g~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
. .+......... .....+. + .+..++.-+.. .. |...++.... ...... .......|..+.+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ly~~tn~~~~~~~l~~~~~~~~~---~~~~l~---~~~~~~~i~~~~~~~- 325 (686)
T PRK10115 255 ELADAEPFVFLPRRKDHEYSLD-H-YQHRFYLRSNRHGKNFGLYRTRVRDEQ---QWEELI---PPRENIMLEGFTLFT- 325 (686)
T ss_pred cCCCCCceEEEECCCCCEEEEE-e-CCCEEEEEEcCCCCCceEEEecCCCcc---cCeEEE---CCCCCCEEEEEEEEC-
Confidence 2 33322222222 2222222 2 23344443332 22 3333333110 000000 111224677777763
Q ss_pred CCCEEEEEECCCcEEEE--eCCcc-ceeeecccCCCCeEEEEEe--cCC-CEEEEEe---CCCcEEEEeCCCCC
Q 005352 498 DSSKVMVSCADSQVRIL--QGPNV-IGKYKGLRRSGNQLSACFT--SDG-KHIVSAG---EDSNVYMWNCIGHE 562 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iw--d~~~~-~~~~~~~~~~~~v~~l~~s--~dg-~~l~sgs---~Dg~I~iWd~~~~~ 562 (701)
..++++...++.-+++ +.... ...+.. .....+..+.++ +++ .++++.+ .-+.++.||+.+++
T Consensus 326 -~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 326 -DWLVVEERQRGLTSLRQINRKTREVIGIAF-DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred -CEEEEEEEeCCEEEEEEEcCCCCceEEecC-CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 4666666667766555 43221 111111 112223333344 333 3444443 34678888887764
No 450
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.50 E-value=42 Score=31.93 Aligned_cols=174 Identities=6% Similarity=0.024 Sum_probs=91.4
Q ss_pred eEEEEECC--CcEEEEECCCCeeeeeecCC-CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEE
Q 005352 367 YLLSASID--KTVRLWRVGNDHCLRVFPHS-NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVC 443 (701)
Q Consensus 367 ~l~s~s~d--g~I~iWd~~~~~~~~~~~h~-~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~ 443 (701)
++.+.+.- ..|++||+.+++.+..-+-. ..+..=-.....+.+..-.-.+|...++|.++.+.+..+..++.=..++
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt 137 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLT 137 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcceeee
Confidence 56666543 46999999999887665422 1111111111022233334468888999999888876666666666665
Q ss_pred EeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE----------CCCcEEE
Q 005352 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC----------ADSQVRI 513 (701)
Q Consensus 444 ~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s----------~dg~I~i 513 (701)
. |+..|+.+....++++-|..+-......+...... +...++-+.|.. +..++-.- ..|.|.-
T Consensus 138 ~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~---pv~~LNELE~Vd--G~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 138 S--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGV---PVSKLNELEWVD--GELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred c--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCe---ecccccceeeec--cEEEEeeeeecceEEEcCCCCcEEE
Confidence 4 55667777766777777766544333222222221 112223333321 22222221 2233322
Q ss_pred -EeCCccceeeecc-cCCCCeEEEEEecCC-CEEEEE
Q 005352 514 -LQGPNVIGKYKGL-RRSGNQLSACFTSDG-KHIVSA 547 (701)
Q Consensus 514 -wd~~~~~~~~~~~-~~~~~v~~l~~s~dg-~~l~sg 547 (701)
+|+.......... .+..-.+.+++.|++ ++++||
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 3444333333222 244567889999987 555665
No 451
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=81.61 E-value=79 Score=37.38 Aligned_cols=172 Identities=14% Similarity=0.147 Sum_probs=97.5
Q ss_pred EEEEECCCCeeeeeecCC-----CCeEEEEEeeCCCC-EEEEEE-----------cCCcEEEEeCC-CCcEEEE---ecC
Q 005352 377 VRLWRVGNDHCLRVFPHS-----NYVTCVHFNPVDDN-YFISGS-----------IDGKVRIWAVL-SCHVVDW---VDI 435 (701)
Q Consensus 377 I~iWd~~~~~~~~~~~h~-----~~V~~l~f~p~~~~-~l~sgs-----------~dg~v~iwd~~-~~~~~~~---~~~ 435 (701)
|++.|..+++.+..+.+. -.+..+.|+..+.. ++++|. .+|.++.|++- .+..+.+ ...
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 777787777766666532 23556667653333 333332 13446666552 3343332 333
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
.+++.++ .|...++++|- ...+++||+...++........ -...|+.+++ ....+++|...-.|.++-
T Consensus 935 ~~~v~Ai--~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~------~p~~Is~iqt---~~~RI~VgD~qeSV~~~~ 1002 (1205)
T KOG1898|consen 935 PGPVGAI--CPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKF------IPNRISSIQT---YGARIVVGDIQESVHFVR 1002 (1205)
T ss_pred CccceEE--eccCCEEEEec-ccEEEEeeCChHHHHhhhhhcc------CceEEEEEee---cceEEEEeeccceEEEEE
Confidence 4555554 46555666554 4789999998776543322221 2356777777 457788888776776655
Q ss_pred CCcc---ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 516 GPNV---IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 516 ~~~~---~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.+.. ...+..-.-...|+++.+ -|...+|.|..=|.+.+-.+-..
T Consensus 1003 y~~~~n~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1003 YRREDNQLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred EecCCCeEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECCCc
Confidence 4432 222322223445666555 45567888877788877776443
No 452
>PLN02193 nitrile-specifier protein
Probab=80.28 E-value=99 Score=34.08 Aligned_cols=145 Identities=7% Similarity=0.000 Sum_probs=70.4
Q ss_pred eEEEEECC-------CcEEEEECCCCeeeeeec---CCC--CeEEEEEeeCCCCEEEEEEcC-----CcEEEEeCCCCcE
Q 005352 367 YLLSASID-------KTVRLWRVGNDHCLRVFP---HSN--YVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHV 429 (701)
Q Consensus 367 ~l~s~s~d-------g~I~iWd~~~~~~~~~~~---h~~--~V~~l~f~p~~~~~l~sgs~d-----g~v~iwd~~~~~~ 429 (701)
.++.|+.+ ..+.+||+.+.+-...-. ... ........- ++.+++.|+.+ ..+.+||+.+.+-
T Consensus 178 iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~-~~~lYvfGG~~~~~~~ndv~~yD~~t~~W 256 (470)
T PLN02193 178 IYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI-GSTLYVFGGRDASRQYNGFYSFDTTTNEW 256 (470)
T ss_pred EEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE-CCEEEEECCCCCCCCCccEEEEECCCCEE
Confidence 55555542 247788887765442211 111 111111122 56677777755 3588899887654
Q ss_pred EEEecC---CCc--EEEEEEeeCCCeEEEEecCC-----cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 430 VDWVDI---RQI--VTAVCYRPDGQGGIVGSMMG-----DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 430 ~~~~~~---~~~--i~~i~~sp~g~~l~~gs~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
...... ..+ -.++ ..-+++.++.|+.++ .+..||+.+........ .......... ..++.. ++
T Consensus 257 ~~l~~~~~~P~~R~~h~~-~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~---~~~~~~~R~~-~~~~~~--~g 329 (470)
T PLN02193 257 KLLTPVEEGPTPRSFHSM-AADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCST---PGDSFSIRGG-AGLEVV--QG 329 (470)
T ss_pred EEcCcCCCCCCCccceEE-EEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCC---CCCCCCCCCC-cEEEEE--CC
Confidence 432221 111 1122 223566666776543 46788888766532111 0000011111 122222 45
Q ss_pred CEEEEEECC----CcEEEEeCCcc
Q 005352 500 SKVMVSCAD----SQVRILQGPNV 519 (701)
Q Consensus 500 ~~l~~~s~d----g~I~iwd~~~~ 519 (701)
.+++.++.+ ..+.+||..+.
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCC
Confidence 677777655 45888887643
No 453
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=80.19 E-value=74 Score=32.60 Aligned_cols=156 Identities=14% Similarity=0.149 Sum_probs=76.6
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc-EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
..+.+..+..++ ++.+++++.....+.-||--... ..........|.+|.|.|++...+++ ..|.|++=+.......
T Consensus 143 ~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 456788888888 88888887655555677754332 22333356789999999997766654 7788888773222211
Q ss_pred eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE-EeCC-ccceeeecccCCCCeEEEEEecCCCEEEEEeC
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI-LQGP-NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i-wd~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
.... ..........+..++|.+ +....+ ++..|.+.. -|.. +..+.-....-...++.+.|.++.+-++. +.
T Consensus 221 w~~~---~~~~~~~~~~~ld~a~~~-~~~~wa-~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~ 294 (302)
T PF14870_consen 221 WSEP---IIPIKTNGYGILDLAYRP-PNEIWA-VGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQ 294 (302)
T ss_dssp E------B-TTSS--S-EEEEEESS-SS-EEE-EESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred cccc---cCCcccCceeeEEEEecC-CCCEEE-EeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CC
Confidence 1110 011123334578899987 444444 555554444 2322 22222222224556888999766554444 56
Q ss_pred CCcEEEE
Q 005352 550 DSNVYMW 556 (701)
Q Consensus 550 Dg~I~iW 556 (701)
+|.|.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 8877655
No 454
>PLN02153 epithiospecifier protein
Probab=79.08 E-value=87 Score=32.73 Aligned_cols=102 Identities=10% Similarity=0.070 Sum_probs=53.1
Q ss_pred eEEEEECC-------CcEEEEECCCCeeeeeecC---CC----CeEEEEEeeCCCCEEEEEEcC-----CcEEEEeCCCC
Q 005352 367 YLLSASID-------KTVRLWRVGNDHCLRVFPH---SN----YVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSC 427 (701)
Q Consensus 367 ~l~s~s~d-------g~I~iWd~~~~~~~~~~~h---~~----~V~~l~f~p~~~~~l~sgs~d-----g~v~iwd~~~~ 427 (701)
.++.|+.+ ..+.+||+.+.+-...-.. .. ....+.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 35 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 35 LYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred EEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEECCCC
Confidence 55555542 3578888887654332211 11 1112222 56677777753 35788998876
Q ss_pred cEEEEecC-----CCc-EEEEEEeeCCCeEEEEecC-----------CcEEEEECCCCeee
Q 005352 428 HVVDWVDI-----RQI-VTAVCYRPDGQGGIVGSMM-----------GDCRFYNVSDNHLE 471 (701)
Q Consensus 428 ~~~~~~~~-----~~~-i~~i~~sp~g~~l~~gs~d-----------g~v~i~d~~~~~~~ 471 (701)
+-...... ..+ ....+...+++.++.|+.+ ..+.+||..+....
T Consensus 112 ~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 112 EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 54332211 111 1112223356666777653 24778898877654
No 455
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.19 E-value=0.32 Score=51.21 Aligned_cols=97 Identities=14% Similarity=0.254 Sum_probs=70.4
Q ss_pred ccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeee-ec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc
Q 005352 354 SGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRV-FP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (701)
Q Consensus 354 ~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~-~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~ 428 (701)
++...+++|..++ .++.+-..+.+.+||+.+...... +. +.... +.|++ ....++.+...|.+.|++..+.+
T Consensus 74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR 150 (615)
T KOG2247|consen 74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSR 150 (615)
T ss_pred chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchh
Confidence 3455677888877 666777889999999976532211 22 32222 77888 77788888889999999998887
Q ss_pred EEEEec-CCCcEEEEEEeeCCCeEEE
Q 005352 429 VVDWVD-IRQIVTAVCYRPDGQGGIV 453 (701)
Q Consensus 429 ~~~~~~-~~~~i~~i~~sp~g~~l~~ 453 (701)
.+...+ |...++++++.+.+..+..
T Consensus 151 ~iiv~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 151 RIIVMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred hhhhhcccccceeEEEecccceeeec
Confidence 776665 8888999999997755443
No 456
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.18 E-value=1.1e+02 Score=33.37 Aligned_cols=113 Identities=12% Similarity=0.014 Sum_probs=61.2
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE------Ee--cCCCcEEEEEEeeCC------CeEEEEe----
Q 005352 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD------WV--DIRQIVTAVCYRPDG------QGGIVGS---- 455 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~------~~--~~~~~i~~i~~sp~g------~~l~~gs---- 455 (701)
-...+.|+|.| ++++|++--..|.|++++..++.... .. ........|+++|+- .+|++..
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 34578899999 88877776546999999865543221 11 135668899999873 3455543
Q ss_pred ------cCCcEEEEECCCCee-eeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 456 ------MMGDCRFYNVSDNHL-ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 456 ------~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
....|.-|.+..... .......+........+.-..|.|.| ++.++++.+..
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCC
Confidence 123344455542211 11111111111111223455678999 56666555443
No 457
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=77.94 E-value=1.5e+02 Score=34.94 Aligned_cols=158 Identities=13% Similarity=0.157 Sum_probs=96.3
Q ss_pred CccCeEEEEEe---c--CC--eEEEEECCCcEEEEEC------CC---------Ceeeeeec----CCCCeEEEEEeeCC
Q 005352 353 HSGEILDLSWS---K--NN--YLLSASIDKTVRLWRV------GN---------DHCLRVFP----HSNYVTCVHFNPVD 406 (701)
Q Consensus 353 h~~~I~~l~~s---~--~~--~l~s~s~dg~I~iWd~------~~---------~~~~~~~~----h~~~V~~l~f~p~~ 406 (701)
-..+|..|+|. . +. .++..-....+.|+.. .. ..++..+. ...+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 44677777776 2 11 3444444555666651 11 12333333 34577899999988
Q ss_pred CCEEEEEEcCCcEEEEeCCCCc-----EEE-EecCC----------CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCee
Q 005352 407 DNYFISGSIDGKVRIWAVLSCH-----VVD-WVDIR----------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~-----~~~-~~~~~----------~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~ 470 (701)
...||.....|...||++.... ... ..... ..-..|.|.++-+.|++++. ..+.++|+.+...
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNWQ 236 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCCc
Confidence 8899999999999999992211 111 11111 22347889888888888865 6789999987654
Q ss_pred eeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
... -........|..+.-+|.+..+++.-+. ..|...++..
T Consensus 237 ~~~------l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~ 277 (765)
T PF10214_consen 237 TEY------LVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKS 277 (765)
T ss_pred cch------hccCCChhheeeEEecCCccceEEEEec-CeEEEEEccC
Confidence 211 1122344678888888864555444433 5676777665
No 458
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=77.83 E-value=95 Score=32.47 Aligned_cols=40 Identities=3% Similarity=-0.153 Sum_probs=20.7
Q ss_pred CcEEEEeCCCCcEEEEecCCC-c-EEEEEEeeCCCeEEEEec
Q 005352 417 GKVRIWAVLSCHVVDWVDIRQ-I-VTAVCYRPDGQGGIVGSM 456 (701)
Q Consensus 417 g~v~iwd~~~~~~~~~~~~~~-~-i~~i~~sp~g~~l~~gs~ 456 (701)
..+.+||..+.+-........ + ........+++.++.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 457888987765443222211 1 111222346777777765
No 459
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.37 E-value=47 Score=40.21 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=23.7
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 538 TSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 538 s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
++++..++++..||.+..||+..++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 78899999999999999999999754
No 460
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=76.84 E-value=15 Score=34.16 Aligned_cols=30 Identities=13% Similarity=0.350 Sum_probs=25.2
Q ss_pred cCeEEEEEecCC-------eEEEEECCCcEEEEECCC
Q 005352 355 GEILDLSWSKNN-------YLLSASIDKTVRLWRVGN 384 (701)
Q Consensus 355 ~~I~~l~~s~~~-------~l~s~s~dg~I~iWd~~~ 384 (701)
..|..++|||.| .|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999954 788899999999997653
No 461
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=76.68 E-value=22 Score=40.56 Aligned_cols=106 Identities=12% Similarity=0.109 Sum_probs=72.3
Q ss_pred CCCEEEEEEcCCcEEEEeCCC-------C---------c----EEEEecCCCcEEEEEEe--eCCCeEEEEecCCcEEEE
Q 005352 406 DDNYFISGSIDGKVRIWAVLS-------C---------H----VVDWVDIRQIVTAVCYR--PDGQGGIVGSMMGDCRFY 463 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~-------~---------~----~~~~~~~~~~i~~i~~s--p~g~~l~~gs~dg~v~i~ 463 (701)
+...|+.+..||.|.+|.+.. . + ...........+.++++ ...++||+++....|.+|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 566888899999999996521 0 0 11223345678999998 788899999988888887
Q ss_pred ECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC--CC---EEEEEECCCcEEEEeC
Q 005352 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD--SS---KVMVSCADSQVRILQG 516 (701)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~--~~---~l~~~s~dg~I~iwd~ 516 (701)
-+....... .......+...|.++.|.+++ +. .+++++-.|.+.+|++
T Consensus 193 af~l~~~r~-----~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERF-----YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecccccc-----ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 765421110 011122356779999998854 22 7778888999999887
No 462
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.25 E-value=23 Score=42.59 Aligned_cols=142 Identities=12% Similarity=0.118 Sum_probs=79.6
Q ss_pred cCCcEEEEeCCCCcEE-EEecCCCcEEEEEE--------eeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec-ccCC
Q 005352 415 IDGKVRIWAVLSCHVV-DWVDIRQIVTAVCY--------RPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS-KKKA 484 (701)
Q Consensus 415 ~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~--------sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~-~~~~ 484 (701)
.|+.+.+|+..++.-. ..-+....|..|.. .|.=+++++-+.--.|.++-+.-........+.... ....
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 4888999999985433 33334445555443 223345555555566666665433222111111111 1112
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC----c-------------------cce-eeecc-cCCCCeEEEEEec
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGP----N-------------------VIG-KYKGL-RRSGNQLSACFTS 539 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~----~-------------------~~~-~~~~~-~~~~~v~~l~~s~ 539 (701)
....|+++.... +|+.+++| .|| .+|.+. . ... .++.. .+..+|..+.+..
T Consensus 177 dg~~V~~I~~t~-nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 177 DGVSVNCITYTE-NGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred CCceEEEEEecc-CCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 235577777433 56655555 455 444321 0 000 11111 3567999999998
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q 005352 540 DGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 540 dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
..+.+.+-++.|+|.+|++..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 889999999999999999987
No 463
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.20 E-value=42 Score=36.32 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=54.8
Q ss_pred cEEEEEEeeCCCeEEEEecCCcEEEEEC---------CCCeeeeeee-EEe--ecccCCCCCCeeEEEEecCC--CCEEE
Q 005352 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNV---------SDNHLELDAE-ICV--HSKKKAPCKRITGFQFLPQD--SSKVM 503 (701)
Q Consensus 438 ~i~~i~~sp~g~~l~~gs~dg~v~i~d~---------~~~~~~~~~~-~~~--~~~~~~~~~~i~~l~~~p~~--~~~l~ 503 (701)
.|..+..++.|..++..+.+|.+.++=. .+++....-. +.+ ........-.+...+|+|+. ...+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4778888999999999999997766542 2222111110 000 01112233445677899965 67899
Q ss_pred EEECCCcEEEEeCCccceee
Q 005352 504 VSCADSQVRILQGPNVIGKY 523 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~~~ 523 (701)
.-+.|+.||+||.......+
T Consensus 185 iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEecCcEEEEEecCCcchhh
Confidence 99999999999987554443
No 464
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=74.57 E-value=1.8e+02 Score=34.18 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=46.8
Q ss_pred CCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec-------------------ccCCCCeEEEEEecCCCEEEEE
Q 005352 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG-------------------LRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~-------------------~~~~~~v~~l~~s~dg~~l~sg 547 (701)
..|.++.... -+..++....||+|.++|-.+....... ......+..++|||++.-++.-
T Consensus 260 ~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 4566666665 5678899999999999996654222111 0112244568899999999999
Q ss_pred eCCCcEE
Q 005352 548 GEDSNVY 554 (701)
Q Consensus 548 s~Dg~I~ 554 (701)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9999965
No 465
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=74.10 E-value=0.7 Score=48.77 Aligned_cols=146 Identities=7% Similarity=0.063 Sum_probs=96.7
Q ss_pred eEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEE-EecCCcEEEEECCCCeeeeeee
Q 005352 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV-GSMMGDCRFYNVSDNHLELDAE 475 (701)
Q Consensus 397 V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~-gs~dg~v~i~d~~~~~~~~~~~ 475 (701)
.....|-| .+.-++.++.+..+..||-. ++.......+.....++|..++..+++ +-..+.+.+||+.+..-..
T Consensus 37 pi~~~w~~-e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq--- 111 (615)
T KOG2247|consen 37 PIIHRWRP-EGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ--- 111 (615)
T ss_pred cceeeEec-CCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH---
Confidence 34556777 44447777778889999864 444444445566677888887766554 5567899999998653211
Q ss_pred EEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 476 ~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
+. ......-.-+.|++ ....++.+...+.+.|++............|...++++++.+.+. .+.++.|..+.
T Consensus 112 LE-----~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~ 183 (615)
T KOG2247|consen 112 LE-----SGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLS 183 (615)
T ss_pred Hh-----ccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHH
Confidence 11 11111112266777 677788888899999999887666666555888999999988764 55555555443
No 466
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=73.86 E-value=13 Score=39.25 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=68.3
Q ss_pred eEEEEECCCcEEEE-ECCCC-----eeeeeecC-CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcE
Q 005352 367 YLLSASIDKTVRLW-RVGND-----HCLRVFPH-SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV 439 (701)
Q Consensus 367 ~l~s~s~dg~I~iW-d~~~~-----~~~~~~~h-~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i 439 (701)
-|+.++.||.|.-| |++.+ ..++.++. ...+..+.-.. +.+-|++-+..|++.++.....+.+-....-..+
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~ 360 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAP 360 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhhhhcCc
Confidence 67788888888888 44332 22233332 23444444332 5566888888999998877666655444444577
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEECCCCee
Q 005352 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~ 470 (701)
.-++++|++.++++-. .|.++++.+++...
T Consensus 361 ~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 361 QLVAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred ceeeeCcccchheeec-CCceEEEEecCCCC
Confidence 7899999999887754 48899999887553
No 467
>PRK13684 Ycf48-like protein; Provisional
Probab=72.24 E-value=1.3e+02 Score=31.40 Aligned_cols=151 Identities=15% Similarity=0.095 Sum_probs=81.3
Q ss_pred ccCeEEEEEecCCeEEEEECCCcEEE-EECCCCeeeeee--cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 354 SGEILDLSWSKNNYLLSASIDKTVRL-WRVGNDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 354 ~~~I~~l~~s~~~~l~s~s~dg~I~i-Wd~~~~~~~~~~--~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
...+.++.+.+++.++..+..|.+.. ++- .++..... .....++++.+.+ ++..++++ ..|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCcc
Confidence 35688889989885555566665543 222 22222222 2456789999998 77776665 4676653234444332
Q ss_pred EEec-----CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE
Q 005352 431 DWVD-----IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 431 ~~~~-----~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
.... ....+.++.+.|++..+++| .+|.+.. ....++--. ..............+.|.. ++..++.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~ 319 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWE-----KDPVGEEVPSNFYKIVFLD--PEKGFVL 319 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCe-----ECCcCCCCCcceEEEEEeC--CCceEEE
Confidence 2111 12357889999987755544 5665543 333222100 0000011123566677765 3445667
Q ss_pred ECCCcEEEEeC
Q 005352 506 CADSQVRILQG 516 (701)
Q Consensus 506 s~dg~I~iwd~ 516 (701)
+..|.|--++.
T Consensus 320 G~~G~il~~~~ 330 (334)
T PRK13684 320 GQRGVLLRYVG 330 (334)
T ss_pred CCCceEEEecC
Confidence 77777776653
No 468
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=71.89 E-value=2.1e+02 Score=33.75 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=72.5
Q ss_pred cCeEEEEEecCC--eEEEEECCCcEEEEECCCCe-----eeeee-cCCCC----------eEEEEEeeCCCCEEEEEEcC
Q 005352 355 GEILDLSWSKNN--YLLSASIDKTVRLWRVGNDH-----CLRVF-PHSNY----------VTCVHFNPVDDNYFISGSID 416 (701)
Q Consensus 355 ~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~-----~~~~~-~h~~~----------V~~l~f~p~~~~~l~sgs~d 416 (701)
.+..+++|+|.. .||.....|...||++.... .+... .+.+. -..|.|.+ +.+.|+.+. .
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~-r 223 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN-R 223 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-C
Confidence 467899999976 99999999999999992111 11111 12222 33678877 667777766 4
Q ss_pred CcEEEEeCCCCcEEE---EecCCCcEEEEEEeeC--CCeEEEEecCCcEEEEECCCC
Q 005352 417 GKVRIWAVLSCHVVD---WVDIRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 417 g~v~iwd~~~~~~~~---~~~~~~~i~~i~~sp~--g~~l~~gs~dg~v~i~d~~~~ 468 (701)
..+.++|+.+..... .......|..+.-+|. +..|+..+ ..|...++...
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~~ 278 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKSS 278 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccCC
Confidence 578999999876533 2234466888888886 33333333 66778887763
No 469
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=71.53 E-value=99 Score=31.32 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=58.0
Q ss_pred CCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEE------cCCcEEEEeCCCCcEEEEec-----CCCcEEE
Q 005352 374 DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS------IDGKVRIWAVLSCHVVDWVD-----IRQIVTA 441 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs------~dg~v~iwd~~~~~~~~~~~-----~~~~i~~ 441 (701)
-..|++||..+.+-...-. -.+.|+.+.|.. +..+++.|. ....+..||..+........ ..++++.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 3469999988876655443 568899999985 666666664 34568899998876544333 3478888
Q ss_pred EEEee-CCCeEE-EEe-cCCc--EEEEEC
Q 005352 442 VCYRP-DGQGGI-VGS-MMGD--CRFYNV 465 (701)
Q Consensus 442 i~~sp-~g~~l~-~gs-~dg~--v~i~d~ 465 (701)
+.+.. ++..+. .|. .+|. |..||=
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcC
Confidence 87753 343343 433 3344 555543
No 470
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=70.83 E-value=1.5e+02 Score=31.69 Aligned_cols=151 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred ccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe-eeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC------
Q 005352 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL------ 425 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~-~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~------ 425 (701)
.+....+..++++ +++.+..-..++-||-.... ..........++.+.|.+ ++.+++++...+.+.--|-.
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g~~G~l~~S~d~G~~~~~~ 316 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRA-DGGLWLLTRGGGLYVSKGTGLTEEDF 316 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcC-CCCEEEEeCCceEEEecCCCCccccc
Q ss_pred CCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE
Q 005352 426 SCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 426 ~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
+-...........++.+.|.+++..+++|.. |.+..-.-............... ..+..+.|.+ .+...+.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~-G~v~~s~D~G~tW~~~~~~~~~~------~~ly~v~f~~--~~~g~~~ 387 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAGGS-GILLRSTDGGKSWKRDKGADNIA------ANLYSVKFFD--DKKGFVL 387 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEECC-CcEEEeCCCCcceeEccccCCCC------cceeEEEEcC--CCceEEE
Q ss_pred ECCCcEEEE
Q 005352 506 CADSQVRIL 514 (701)
Q Consensus 506 s~dg~I~iw 514 (701)
+.+|.|.-|
T Consensus 388 G~~G~il~~ 396 (398)
T PLN00033 388 GNDGVLLRY 396 (398)
T ss_pred eCCcEEEEe
No 471
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=70.57 E-value=1.2e+02 Score=30.50 Aligned_cols=278 Identities=14% Similarity=0.090 Sum_probs=145.0
Q ss_pred cCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC
Q 005352 203 QGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (701)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~ 282 (701)
..-..+++..+++...+..+.-++|.|..........-+ +. -.+--.++. -.|+++..+..|.-+.+.|+.+.
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~----ln-t~gyaygv~--vsGn~aYVadlddgfLivdvsdp 158 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGF----LN-TDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDP 158 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceecc----cc-CCceEEEEE--ecCCEEEEeeccCcEEEEECCCC
Confidence 344566777888888888888899999865443221111 10 112233333 36888888886666778888765
Q ss_pred eeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEE
Q 005352 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (701)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 362 (701)
+... ....+......-..++.
T Consensus 159 ssP~-----------------------------------------------------------lagrya~~~~d~~~v~I 179 (370)
T COG5276 159 SSPQ-----------------------------------------------------------LAGRYALPGGDTHDVAI 179 (370)
T ss_pred CCce-----------------------------------------------------------eeeeeccCCCCceeEEE
Confidence 4110 00111122223345555
Q ss_pred ecCCeEEEEECCCcEEEEECCCCe---eeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---CC
Q 005352 363 SKNNYLLSASIDKTVRLWRVGNDH---CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---IR 436 (701)
Q Consensus 363 s~~~~l~s~s~dg~I~iWd~~~~~---~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---~~ 436 (701)
|-+ +-..+..|+-+.+-|+.... .+........+..+..++ +..+++.. +.-+.+-|..+.+....++ ..
T Consensus 180 SGn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsd-nr~y~vvy--~egvlivd~s~~ssp~~~gsyet~ 255 (370)
T COG5276 180 SGN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD-NRAYLVVY--DEGVLIVDVSGPSSPTVFGSYETS 255 (370)
T ss_pred ecC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecC-CeeEEEEc--ccceEEEecCCCCCceEeeccccC
Confidence 433 55556688889999987654 333344445788887776 44444433 4457777877665433333 22
Q ss_pred CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
.++..-.+.-.+++..+...+.-+.+-|+.+..-... ..........-.++... +.++..+-.+ ...+.+.
T Consensus 256 ~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl-----~ss~~t~g~~a~gi~ay---~~y~yiadkn-~g~vV~~ 326 (370)
T COG5276 256 NPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFL-----SSSLDTAGYQAAGIRAY---GNYNYIADKN-TGAVVDA 326 (370)
T ss_pred CcccccceecccceeeeeccccCceeEeccCCCCCch-----hccccCCCccccceEEe---cCeeEeccCC-ceEEEeC
Confidence 2222213344566777777777777777765432110 00011111111222221 2233333222 3333343
Q ss_pred CccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 517 PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
......-+.......+.+.+.+-+.+++.+...++-+.||+..
T Consensus 327 s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 327 SPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred CChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 3222221111122334455555566788899999999999863
No 472
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.35 E-value=1.5e+02 Score=36.09 Aligned_cols=77 Identities=16% Similarity=0.105 Sum_probs=48.9
Q ss_pred EEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC
Q 005352 348 HEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~ 427 (701)
..+.-|..++.+..+...+.++.+..-+.+.+|+.........+...+ ..+.+ ++..++++..||.+..||...+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 192 LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNG----QLESR-DGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhccccc----ccCcc-CCceEEEEEecCCEEeeecCCC
Confidence 334445556666665555545555556677777665544433333111 11155 8999999999999999999987
Q ss_pred cE
Q 005352 428 HV 429 (701)
Q Consensus 428 ~~ 429 (701)
+.
T Consensus 267 ~~ 268 (993)
T KOG1983|consen 267 KL 268 (993)
T ss_pred ce
Confidence 65
No 473
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=70.23 E-value=1.3e+02 Score=30.76 Aligned_cols=202 Identities=9% Similarity=0.021 Sum_probs=92.5
Q ss_pred CccCeEEEEEecCC--eEEEEECCCcEEEEECCCCee----------------eeeecCCCCeEEEEEeeCCCCEEEEEE
Q 005352 353 HSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHC----------------LRVFPHSNYVTCVHFNPVDDNYFISGS 414 (701)
Q Consensus 353 h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~----------------~~~~~h~~~V~~l~f~p~~~~~l~sgs 414 (701)
+...|+++...+.. .++.++....++++++..-.. ...+.+........+.......++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 45678899888765 344444455599999833221 123334443333333331223455556
Q ss_pred cCCcEEEEeCCCC--cEEEEe-------cCCCcEEEEEEeeC--CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC
Q 005352 415 IDGKVRIWAVLSC--HVVDWV-------DIRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (701)
Q Consensus 415 ~dg~v~iwd~~~~--~~~~~~-------~~~~~i~~i~~sp~--g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 483 (701)
...+|.++..... +..... ....++..+..+++ ...+.+|+..+...++++...... .....+.....
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~-~~d~sl~~~~~ 199 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVS-KEDLSLPFLSE 199 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccc-ccccccccccc
Confidence 6677777654332 111111 11223434433333 557888877534555555321000 00000000000
Q ss_pred CCC-CCeeEEEEecCCCCEEEEEECCCcEEEEeCCc--cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 484 APC-KRITGFQFLPQDSSKVMVSCADSQVRILQGPN--VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 484 ~~~-~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
... .++..+.+ + + ..++.+-.+. ..+.|... ...... ..-.....++++. ..||+.-+.+ .|.|+++.+
T Consensus 200 ~~~~~p~~i~~l-~-~-~e~Llc~~~~-~v~Vn~~G~~~~r~~~-l~w~~~p~~~~~~--~pyll~~~~~-~ievr~l~~ 271 (302)
T smart00036 200 ETSLKPISVVQV-P-R-DEFLLCYDEF-GVFVNLYGKRRSRNPI-LHWEFMPESFAYH--SPYLLAFHDN-GIEIRSIKT 271 (302)
T ss_pred ccccCceEEEEE-C-C-CeEEEEECcE-EEEEeCCCCccccceE-EEcCCcccEEEEE--CCEEEEEcCC-cEEEEECCC
Confidence 011 23333333 3 2 3444444433 33333322 111111 1123445666665 4577777654 599999998
Q ss_pred CCC
Q 005352 561 HEE 563 (701)
Q Consensus 561 ~~~ 563 (701)
++.
T Consensus 272 ~~l 274 (302)
T smart00036 272 GEL 274 (302)
T ss_pred Cce
Confidence 863
No 474
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=69.85 E-value=1.6e+02 Score=31.35 Aligned_cols=38 Identities=8% Similarity=-0.117 Sum_probs=19.4
Q ss_pred cEEEEeCCCCcEEEEecCCC-c--EEEEEEeeCCCeEEEEec
Q 005352 418 KVRIWAVLSCHVVDWVDIRQ-I--VTAVCYRPDGQGGIVGSM 456 (701)
Q Consensus 418 ~v~iwd~~~~~~~~~~~~~~-~--i~~i~~sp~g~~l~~gs~ 456 (701)
.+.+||..+.+-........ . -.++.. .+++..+.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~-~~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVI-KGNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEE-ECCEEEEEeee
Confidence 48889988765443222221 1 122222 35666666664
No 475
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=69.70 E-value=1.1e+02 Score=30.90 Aligned_cols=116 Identities=11% Similarity=0.038 Sum_probs=67.5
Q ss_pred CcEEEEeCCCCcEEEEe-cCCCcEEEEEEeeCCCeEEEEe------cCCcEEEEECCCCeeeeeeeEEeeccc-CCCCCC
Q 005352 417 GKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGS------MMGDCRFYNVSDNHLELDAEICVHSKK-KAPCKR 488 (701)
Q Consensus 417 g~v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~gs------~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~ 488 (701)
..|.+||+.+.+-...- ...+.|+.+.|..+.+.++.|. ....+..||+.+...... .... ..-..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~-----~~~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSL-----GGGSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeec-----CCcccccCCCc
Confidence 35899999887655332 3567899999997666666664 345688899887654211 1100 123467
Q ss_pred eeEEEEecCCCCEEE-EEE-C--CCcEEEEeCCccceeee-cccCCCCeEEEEE
Q 005352 489 ITGFQFLPQDSSKVM-VSC-A--DSQVRILQGPNVIGKYK-GLRRSGNQLSACF 537 (701)
Q Consensus 489 i~~l~~~p~~~~~l~-~~s-~--dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~ 537 (701)
++.+.+...+...+. .|. . +..|..||..+....-. .......|..+.+
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 888888665555444 443 2 34567788765443333 1222344444443
No 476
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=68.75 E-value=52 Score=32.46 Aligned_cols=133 Identities=15% Similarity=0.222 Sum_probs=70.1
Q ss_pred EEEECCCCeeeeee-cCCCCeEEEEEeeCCCCEEEEEEcC---CcEEEEeCCC-CcEEEE------ecCCCcEEEEEEee
Q 005352 378 RLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSID---GKVRIWAVLS-CHVVDW------VDIRQIVTAVCYRP 446 (701)
Q Consensus 378 ~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~d---g~v~iwd~~~-~~~~~~------~~~~~~i~~i~~sp 446 (701)
.+||+.+++..... ...-.+.+-.+.+ ++++|.+|+.. ..+++++... .....+ ......-.++..-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 57888877543322 1333444456778 99999988742 3488887654 111112 22233445566678
Q ss_pred CCCeEEEEecCCc-EEEEECCCC-eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 447 DGQGGIVGSMMGD-CRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 447 ~g~~l~~gs~dg~-v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
||+.|++|+.... ..+|.-... .......+...........-...+...| ++++++.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llP-dG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLP-DGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcC-CCCEEEEEcCCcEEE
Confidence 9999999987643 344443211 1011110110011111223334456677 788888887765544
No 477
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.74 E-value=44 Score=40.39 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=78.8
Q ss_pred EECCCcEEEEECCCCeeeeeec-CCCCeEEEE--------EeeCCCCEEEEEEcCCcEEEEeCC----CCcEE------E
Q 005352 371 ASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH--------FNPVDDNYFISGSIDGKVRIWAVL----SCHVV------D 431 (701)
Q Consensus 371 ~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~--------f~p~~~~~l~sgs~dg~v~iwd~~----~~~~~------~ 431 (701)
.+-|+.+.+|+.+++.....+. ....|..+. |.| .=++++..+.--.|.++-+. ++... .
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~-~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVP-EIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchh-hhheeEEecccceEEEEEEEeccccCccccccccee
Confidence 3568899999999876555554 233343332 223 22233333334445555332 22111 1
Q ss_pred EecCCCcEEEEEEeeCCCeEEEEecCCcEE--EEECCCCee-eeeeeE------------EeecccCCCCCCeeEEEEec
Q 005352 432 WVDIRQIVTAVCYRPDGQGGIVGSMMGDCR--FYNVSDNHL-ELDAEI------------CVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 432 ~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~--i~d~~~~~~-~~~~~~------------~~~~~~~~~~~~i~~l~~~p 496 (701)
.......|+++....+|+.+++|- ||.+. +|....+=. ....++ .+......+..+|..+.+..
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 112245688898888888777665 45333 122221100 000000 01111234566888898877
Q ss_pred CCCCEEEEEECCCcEEEEeCCc
Q 005352 497 QDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
....+.+-+..++|.+||+..
T Consensus 253 -SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 -SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred -ccceeeeeccCceEEEEEccC
Confidence 678899999999999999763
No 478
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=68.18 E-value=1.5e+02 Score=32.41 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=60.9
Q ss_pred CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc-CCCCCCeeEEEEecCC-----CCEEEEEE-C
Q 005352 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK-KAPCKRITGFQFLPQD-----SSKVMVSC-A 507 (701)
Q Consensus 435 ~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~p~~-----~~~l~~~s-~ 507 (701)
.-...+.|+|.|+|+.|++--..|.|++++..+........ +.... ........+|+++|+- ..+|.+.. .
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~--l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFT--LPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeec--CCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence 34568899999999766655446999999865543221111 11111 1135678899999842 12344332 1
Q ss_pred ---------CCcEEEEeCCc-------cceeeeccc--CCCCeEEEEEecCCCEEEEEeCC
Q 005352 508 ---------DSQVRILQGPN-------VIGKYKGLR--RSGNQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 508 ---------dg~I~iwd~~~-------~~~~~~~~~--~~~~v~~l~~s~dg~~l~sgs~D 550 (701)
...|.-|.+.. ....+.... ....-..|.|.|||.+.++.++.
T Consensus 106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 22343344321 122222211 11223567899999877766544
No 479
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=67.99 E-value=15 Score=41.42 Aligned_cols=80 Identities=14% Similarity=0.234 Sum_probs=47.0
Q ss_pred CccccccccccceEEEEEccC---ccchhh--------------hcccCc--eeccCCCcEEEEEEcc----CCCEEEEE
Q 005352 212 NEEDAMFCSKVQRVKVYHCKK---RSKELS--------------ALYKGQ--EIQAHDGSILTMKFSP----DGQYLASA 268 (701)
Q Consensus 212 ~~~~~~~~~~d~~v~vw~~~~---~~~~~~--------------~~~~~~--~l~~H~~~I~~l~fsp----dg~~Lasg 268 (701)
++..++++..||.+....... ...... .+.... .-..-.+.+..+++++ +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 667777788888877777654 111100 000000 0011134566666766 67899999
Q ss_pred eCCCcEEEEEeecCeeeeeecCC
Q 005352 269 GDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 269 s~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
+.|+++|+||+.+++++....+.
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEETT
T ss_pred eCCCeEEEEECCCCeEEEEeccc
Confidence 99999999999999987776554
No 480
>PF15477 SMAP: Small acidic protein family
Probab=65.34 E-value=4 Score=31.41 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhhcCCC
Q 005352 51 VKERRSKFLDWMEAGL 66 (701)
Q Consensus 51 ~~~~~~~~~~~~~~~~ 66 (701)
=.||.+||||-||.-.
T Consensus 10 d~~rk~KFlRLMG~kk 25 (69)
T PF15477_consen 10 DSERKEKFLRLMGGKK 25 (69)
T ss_pred CHHHHHHHHHHhcCCC
Confidence 4799999999999876
No 481
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=64.92 E-value=12 Score=41.70 Aligned_cols=78 Identities=10% Similarity=0.204 Sum_probs=53.3
Q ss_pred CeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEE
Q 005352 385 DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN 464 (701)
Q Consensus 385 ~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d 464 (701)
..|....+....+++++-+| .+.-++.+..||.|++|+....+.........+...+.|... .|++.+.|..+.-|.
T Consensus 5 ~~~s~~~k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnh--gl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 5 FDCSRDPKEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNH--GLVTATSDRRALAWK 81 (1636)
T ss_pred ccccCCccccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeecc--ceEEEeccchhheee
Confidence 33444444566788999999 999999999999999999876655444444445555555543 466666666666665
Q ss_pred C
Q 005352 465 V 465 (701)
Q Consensus 465 ~ 465 (701)
-
T Consensus 82 ~ 82 (1636)
T KOG3616|consen 82 E 82 (1636)
T ss_pred c
Confidence 3
No 482
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=64.55 E-value=1.6e+02 Score=29.48 Aligned_cols=185 Identities=9% Similarity=0.015 Sum_probs=117.6
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeee-ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~-~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 433 (701)
.-..++-.++| .-+++...+.|--.|..+++.... +........|..-| ++..-++-+.. -|.-.|-++..+..+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEee
Confidence 34567778888 777888788888888888876543 33445566777888 77666654433 4555666666655433
Q ss_pred c----CCCcEEEEEEeeCCCeEEEEec---------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCC
Q 005352 434 D----IRQIVTAVCYRPDGQGGIVGSM---------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (701)
Q Consensus 434 ~----~~~~i~~i~~sp~g~~l~~gs~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~ 500 (701)
- .........|.+.|+.-+++.. .+.|++|+.. ....-.+++..| ++.
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------------qG~gpyGi~atp-dGs 201 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------------QGGGPYGICATP-DGS 201 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------------CCCCCcceEECC-CCc
Confidence 2 2345778899999998888753 1234444433 224456788888 677
Q ss_pred EEEEEECCCcEEEEeCCcccee-eeccc-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 501 KVMVSCADSQVRILQGPNVIGK-YKGLR-RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 501 ~l~~~s~dg~I~iwd~~~~~~~-~~~~~-~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.-++.-.++.|-..|....... +.... .......+--+|.|+.-+|....+.++.+|-.+.
T Consensus 202 vwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 202 VWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred EEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 7777777777777775533211 11111 1223344555778888888777888888886554
No 483
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.01 E-value=2.3e+02 Score=31.08 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=29.1
Q ss_pred cCeEEEEEecCC----eEEEEECCCcEEEEECCCCeeeeee
Q 005352 355 GEILDLSWSKNN----YLLSASIDKTVRLWRVGNDHCLRVF 391 (701)
Q Consensus 355 ~~I~~l~~s~~~----~l~s~s~dg~I~iWd~~~~~~~~~~ 391 (701)
-.+...+|+|+. .|+.-+.|.+||+||+.....+...
T Consensus 166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 356778899975 7888889999999999877665433
No 484
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=61.13 E-value=45 Score=35.43 Aligned_cols=163 Identities=8% Similarity=-0.029 Sum_probs=92.0
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--EEecC-CC----cEE-EEEEeeCCCeEEEEecCCcEEEE-
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDI-RQ----IVT-AVCYRPDGQGGIVGSMMGDCRFY- 463 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~~-~~----~i~-~i~~sp~g~~l~~gs~dg~v~i~- 463 (701)
....|..+-..| +++.+..-+. ..+.++++.+.... +.... .+ .|+ ++..-..|..+++++.||-|..|
T Consensus 219 ~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 219 PFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred CccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 446678888899 9988877664 68899988766433 11111 11 122 22223356678889999998766
Q ss_pred ECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCE
Q 005352 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKH 543 (701)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 543 (701)
|++...... +......+-....+..+.-- ++.+-+++-..+|++.++........+... .-..+.-+++||++.+
T Consensus 297 dvr~~~~p~---l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 297 DVRRDGQPH---LNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAY 371 (733)
T ss_pred eeecCCCCc---ceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccch
Confidence 554332110 00000001111112111111 134556666777888777654322222211 2235667899999999
Q ss_pred EEEEeCCCcEEEEeCCCCCC
Q 005352 544 IVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 544 l~sgs~Dg~I~iWd~~~~~~ 563 (701)
|++-. .|.|+++.+++...
T Consensus 372 Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 372 LLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred heeec-CCceEEEEecCCCC
Confidence 98753 57899999988763
No 485
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=60.99 E-value=1.6e+02 Score=33.94 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=61.1
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCc-----EEEEeCCC---CcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECC
Q 005352 395 NYVTCVHFNPVDDNYFISGSIDGK-----VRIWAVLS---CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~dg~-----v~iwd~~~---~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~ 466 (701)
+.-..+.|-| .+..+++-..||. |+++.-+. |..-...+....+..++|+.....++++ ..+.+++|-..
T Consensus 247 g~e~~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttk 324 (1243)
T COG5290 247 GMEHQLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTK 324 (1243)
T ss_pred cchhcccccc-CCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEcc
Confidence 3344578999 8899998776653 55554322 2222223344557777887766555554 34679999988
Q ss_pred CCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 467 DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
+-+..+...... ..+.-+.|+|...+.++....
T Consensus 325 NyhWYLK~e~~i--------p~~s~vkwhpe~~nTl~f~d~ 357 (1243)
T COG5290 325 NYHWYLKVERQI--------PGISYVKWHPEEKNTLLFRDG 357 (1243)
T ss_pred ceEEEEEEeecC--------CCcceeeeccccCcEEEEecC
Confidence 766554433322 335667788755454444433
No 486
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=60.52 E-value=36 Score=31.63 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=26.1
Q ss_pred CcEEEEEEeeCC------CeEEEEecCCcEEEEECCCC
Q 005352 437 QIVTAVCYRPDG------QGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 437 ~~i~~i~~sp~g------~~l~~gs~dg~v~i~d~~~~ 468 (701)
..+.+++|+|.| -.|++.+.+|.|.+|.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 378999999954 36888899999999987643
No 487
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=60.12 E-value=3e+02 Score=31.85 Aligned_cols=95 Identities=9% Similarity=0.022 Sum_probs=52.9
Q ss_pred EEEEEEeeCCCeEEEEecCCc-----EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 439 VTAVCYRPDGQGGIVGSMMGD-----CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg~-----v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
-..++|-|+|..+++-..||. |.++.-+.-..- + ..........+...+|+- ...+++....+.|.+
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHG-e-----f~lr~~~dEk~~~~~wn~--~s~vlav~~~n~~~l 320 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHG-E-----FDLRVGCDEKAFLENWNL--LSTVLAVAEGNLLKL 320 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccC-C-----ccccCCchhhhhhhhhhH--HHHHHHHhhcceEEE
Confidence 345899999999998765543 555543321100 0 000112223455566654 123344455678999
Q ss_pred EeCCccceeeecccCCCCeEEEEEecCC
Q 005352 514 LQGPNVIGKYKGLRRSGNQLSACFTSDG 541 (701)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~l~~s~dg 541 (701)
|-.++..--++.......+.-+.|+|..
T Consensus 321 wttkNyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 321 WTTKNYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EEccceEEEEEEeecCCCcceeeecccc
Confidence 9887655444444445556677888854
No 488
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=60.12 E-value=3.9e+02 Score=32.55 Aligned_cols=174 Identities=11% Similarity=0.142 Sum_probs=0.0
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-------eEEEEECC---------CcEEEEEC----------CCC
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-------YLLSASID---------KTVRLWRV----------GND 385 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-------~l~s~s~d---------g~I~iWd~----------~~~ 385 (701)
+....+..|....+.-..-..|-..+..+.....+ +|+.|..- |.+.|+|+ .+.
T Consensus 1006 i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~ 1085 (1366)
T KOG1896|consen 1006 IQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTK 1085 (1366)
T ss_pred eEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCccc
Q ss_pred eeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC-CCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEE
Q 005352 386 HCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV-LSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCR 461 (701)
Q Consensus 386 ~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~-~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~ 461 (701)
..++.+. .+++|..++=-. .+|+++. .-+|.||++ +...++...-..-++.......-.++|+.|.--..|.
T Consensus 1086 ~KlKel~~eE~KGtVsavceV~---G~l~~~~-GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksis 1161 (1366)
T KOG1896|consen 1086 NKLKELYIEEQKGTVSAVCEVR---GHLLSSQ-GQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSIS 1161 (1366)
T ss_pred ceeeeeehhhcccceEEEEEec---cEEEEcc-CcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceE
Q ss_pred EEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-CCcEEEE
Q 005352 462 FYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVRIL 514 (701)
Q Consensus 462 i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-dg~I~iw 514 (701)
+.-.......+ ..-.+......+.++.|.-+++++-+..+. ++.|++|
T Consensus 1162 fl~fqeep~rl-----sL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1162 FLGFQEEPYRL-----SLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred EEEEccCceEE-----EEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEE
No 489
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=60.11 E-value=3.1e+02 Score=31.36 Aligned_cols=166 Identities=12% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEee-ecC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR-RTS 328 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 328 (701)
.+.|..++|.++++.++..-..|.|.+||...+..............-+.+. ..+............+.... ...
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys----~fv~~~~~~~~~~~ll~v~~~~~~ 204 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS----KFVNDFELENGKDLLLTVSQLSNS 204 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh----hhhcccccccCCceEEEEEEcCCC
Q ss_pred CccEEEcCCccccccCCCeEEEc---CCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEE----
Q 005352 329 ESACVVFPPKVFRILEKPLHEFH---GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCV---- 400 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~---~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l---- 400 (701)
....-.+.. ......+.++. -+........|.-+. .|+-- .+++|.+|.+.+.+..+++.-..-|..-
T Consensus 205 k~~ykL~~l---~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~ 280 (670)
T PF10395_consen 205 KLSYKLISL---SNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDL 280 (670)
T ss_pred cEEEEEEEe---ccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccc
Q ss_pred -EEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 401 -HFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 401 -~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
.+.|...+.++-+. +++|++.|+
T Consensus 281 vSl~~~s~nRvLLs~-~nkIyLld~ 304 (670)
T PF10395_consen 281 VSLKPPSPNRVLLSV-NNKIYLLDL 304 (670)
T ss_pred eEeecCCCCeEEEEc-CCEEEEEee
No 490
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=59.60 E-value=27 Score=39.42 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=40.8
Q ss_pred CCCEEEEEECCCcEEEEeCCc---cce--------------eeecc---------cCCCCeEEEEEec----CCCEEEEE
Q 005352 498 DSSKVMVSCADSQVRILQGPN---VIG--------------KYKGL---------RRSGNQLSACFTS----DGKHIVSA 547 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~---~~~--------------~~~~~---------~~~~~v~~l~~s~----dg~~l~sg 547 (701)
+...++++..||.+....... ... .+.+. ........++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 567788888888887776442 000 00000 0123456666666 77899999
Q ss_pred eCCCcEEEEeCCCCCC
Q 005352 548 GEDSNVYMWNCIGHEE 563 (701)
Q Consensus 548 s~Dg~I~iWd~~~~~~ 563 (701)
+.|+++++||+.++..
T Consensus 237 ~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQC 252 (547)
T ss_dssp ETTSEEEEEETTTTCE
T ss_pred eCCCeEEEEECCCCeE
Confidence 9999999999999874
No 491
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=59.45 E-value=2.1e+02 Score=29.19 Aligned_cols=147 Identities=13% Similarity=0.179 Sum_probs=77.8
Q ss_pred eEEEEECCCcEEEEECCCCee-----eeeec--CCCCe-EEEEEeeC-CCCEEE-EEEcCCcEEEEeCCCCcEEE---Ee
Q 005352 367 YLLSASIDKTVRLWRVGNDHC-----LRVFP--HSNYV-TCVHFNPV-DDNYFI-SGSIDGKVRIWAVLSCHVVD---WV 433 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~-----~~~~~--h~~~V-~~l~f~p~-~~~~l~-sgs~dg~v~iwd~~~~~~~~---~~ 433 (701)
.++.+++||+|.-|...-... ...+. ....| ..+++... .+++|. +-...++|.+||-.=.++.. +.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 578999999999998533222 12222 12333 34555431 234444 44467889999864332211 00
Q ss_pred cC----CC------------cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 434 DI----RQ------------IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 434 ~~----~~------------~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
+. .. -|+-..-.++.+.=+.|..-|.|-+||+...-+.. + ........-..++..|.
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r---~----as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRR---V----ASSGRLNAPWGLAIAPE 254 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEE---e----ccCCcccCCceeeeChh
Confidence 00 00 01111222333333344556789999987643221 1 12223344566766552
Q ss_pred -----CCCEEEEEECCCcEEEEeCCccc
Q 005352 498 -----DSSKVMVSCADSQVRILQGPNVI 520 (701)
Q Consensus 498 -----~~~~l~~~s~dg~I~iwd~~~~~ 520 (701)
.+.+|+---.||+|..||..+..
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 45666666679999999976443
No 492
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=59.15 E-value=2.3e+02 Score=29.46 Aligned_cols=101 Identities=14% Similarity=0.227 Sum_probs=63.8
Q ss_pred ccCeEEEEEecCC-eEEEEECCCc------EEEEECCCC----eeeeee-----c-CCC--------CeEEEEEeeCCCC
Q 005352 354 SGEILDLSWSKNN-YLLSASIDKT------VRLWRVGND----HCLRVF-----P-HSN--------YVTCVHFNPVDDN 408 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~dg~------I~iWd~~~~----~~~~~~-----~-h~~--------~V~~l~f~p~~~~ 408 (701)
-+.+..|.+.+++ .+++.+.+|. +...++... ..+... . ..+ ..-+|++.+ ++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence 3567888998654 8888888888 666655431 111111 1 111 334788855 888
Q ss_pred EEEEEEcC------CcEEEEeCCCCcEEEEe----------------cCCCcEEEEEEeeCCCeEEEEec
Q 005352 409 YFISGSID------GKVRIWAVLSCHVVDWV----------------DIRQIVTAVCYRPDGQGGIVGSM 456 (701)
Q Consensus 409 ~l~sgs~d------g~v~iwd~~~~~~~~~~----------------~~~~~i~~i~~sp~g~~l~~gs~ 456 (701)
++++.-.+ ..|+.++.. ++....+ ..+...-+++++|+|+.|+++..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 88877666 778888876 4433211 13345889999999997777644
No 493
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=58.14 E-value=2.5e+02 Score=30.27 Aligned_cols=192 Identities=9% Similarity=0.068 Sum_probs=0.0
Q ss_pred cCcceeeecCccccccccccceEEEEEccCccchhhhcccCcee-ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec
Q 005352 203 QGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI-QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281 (701)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 281 (701)
+......-..+-..+....|+.+.||++...............+ .++...|.++ ++.....|.|+.|+--+
T Consensus 26 ~~~~~~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I~ 97 (422)
T PF08801_consen 26 QSPCSMGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESIS 97 (422)
T ss_dssp TTS-EEEEE-TTSEEEEEETTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-TT
T ss_pred ccceEEEEEcccCEEEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEecccch
Q ss_pred CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEE----------Ec
Q 005352 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHE----------FH 351 (701)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 351 (701)
..... ..... +.
T Consensus 98 ~~l~~----------------------------------------------------------~t~~~i~l~gv~~~~l~ 119 (422)
T PF08801_consen 98 HLLVL----------------------------------------------------------ATPSQISLLGVSYSELL 119 (422)
T ss_dssp -TT------------------------------------------------------------EEEE-------------
T ss_pred hhhhc----------------------------------------------------------Cccccccccccceeeec
Q ss_pred CCccCeEEEEEecCCeEEEEECCCcEEEEECCC--CeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE
Q 005352 352 GHSGEILDLSWSKNNYLLSASIDKTVRLWRVGN--DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~--~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~ 429 (701)
.....+.-....+.+ ++.+...|.|.....+. +.....+..... .|-.++. ....++.+-.-+
T Consensus 120 ~~e~~~~~~~~~~~~-~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~-~~~~i~~-~~~~~~~~~~p~------------ 184 (422)
T PF08801_consen 120 SGELSTSLTNVEPSG-FIVSTSTGRIFFLGIRDSNGKYELSYQQLSG-RCSKINH-TSSSIFSSLLPS------------ 184 (422)
T ss_dssp -----EEEEEEETTT-EEEEETT--EEEEEE-TTS-EEEEE-TT------------------------------------
T ss_pred CCceEEECCCCceEE-EEEECCCCeEEEEeCCCCCCcEEEEEEcCcC-Ccccccc-ccCceeccccCC------------
Q ss_pred EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 430 ~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
....+..|.+++..+..+.+++.+.+|.|.+|++..+.........
T Consensus 185 --~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~~~~~~~~~~ 230 (422)
T PF08801_consen 185 --FSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPGGSTLVSKVD 230 (422)
T ss_dssp ---------EEEEEEETTTTEEEEEESSE-EEEEEE-SS-EEEEEEEE
T ss_pred --cccchhceeeEEecCCcCEEEEEeCCCcEEEEEEeCCCCceeeehh
No 494
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=57.95 E-value=39 Score=22.37 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=26.0
Q ss_pred cCC-eEE-EEECCCcEEEEECCCCeeeeeecCCCCeEEEEE
Q 005352 364 KNN-YLL-SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHF 402 (701)
Q Consensus 364 ~~~-~l~-s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f 402 (701)
|++ +|+ +.-.+++|.++|..+++.+..+.-......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 344 444 444688999999999888887764444445544
No 495
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=57.80 E-value=35 Score=22.34 Aligned_cols=34 Identities=21% Similarity=0.485 Sum_probs=0.0
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCC---CcEEEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLW 277 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iW 277 (701)
..+.-..+.-....|||||++|+-++.. |.-.||
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
No 496
>PLN02153 epithiospecifier protein
Probab=57.21 E-value=2.5e+02 Score=29.29 Aligned_cols=101 Identities=7% Similarity=0.105 Sum_probs=51.8
Q ss_pred eEEEEECC-----CcEEEEECCCCeeeeeecC-----CCC--eEEEEEeeCCCCEEEEEEcC-----------CcEEEEe
Q 005352 367 YLLSASID-----KTVRLWRVGNDHCLRVFPH-----SNY--VTCVHFNPVDDNYFISGSID-----------GKVRIWA 423 (701)
Q Consensus 367 ~l~s~s~d-----g~I~iWd~~~~~~~~~~~h-----~~~--V~~l~f~p~~~~~l~sgs~d-----------g~v~iwd 423 (701)
.++.|+.+ ..+.+||+.+.+-...-.. ..+ -.+++. - ++++++.|+.+ ..|.+||
T Consensus 88 iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 88 LYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-D-ENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred EEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-E-CCEEEEECCccCCCccCCCcccceEEEEE
Confidence 55555543 3577888877654322111 111 112222 2 56677777754 2477888
Q ss_pred CCCCcEEEEecCC------CcEEEEEEeeCCCeEEEEecC-------------CcEEEEECCCCeee
Q 005352 424 VLSCHVVDWVDIR------QIVTAVCYRPDGQGGIVGSMM-------------GDCRFYNVSDNHLE 471 (701)
Q Consensus 424 ~~~~~~~~~~~~~------~~i~~i~~sp~g~~l~~gs~d-------------g~v~i~d~~~~~~~ 471 (701)
..+.+-....... ... +++ .-+++.+++|+.+ ..+.+||+.+.+..
T Consensus 166 ~~~~~W~~l~~~~~~~~~r~~~-~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 166 IADGKWVQLPDPGENFEKRGGA-GFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred CCCCeEeeCCCCCCCCCCCCcc-eEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 8876543322111 111 122 2356666655432 45888998877654
No 497
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=57.07 E-value=35 Score=22.56 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=25.9
Q ss_pred CCCEEEE-EEcCCcEEEEeCCCCcEEEEecCCCcEEEEEE
Q 005352 406 DDNYFIS-GSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCY 444 (701)
Q Consensus 406 ~~~~l~s-gs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~ 444 (701)
+++.|++ ...++.|.++|..+++.+...........++|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4555544 44578999999988887766655444555544
No 498
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=56.74 E-value=2.5e+02 Score=29.24 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=28.1
Q ss_pred CCCEEEEEEcC-----------CcEEEEeCCCCcEEEEe-cCCCcEEEE-EE-eeCCCeEEEEecC
Q 005352 406 DDNYFISGSID-----------GKVRIWAVLSCHVVDWV-DIRQIVTAV-CY-RPDGQGGIVGSMM 457 (701)
Q Consensus 406 ~~~~l~sgs~d-----------g~v~iwd~~~~~~~~~~-~~~~~i~~i-~~-sp~g~~l~~gs~d 457 (701)
++.+.+.|+.+ ..+..||..+.+-.... ......... +. .-+++..++|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 67777777753 24777888776543322 111111111 12 3467777777754
No 499
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=56.13 E-value=2.7e+02 Score=29.48 Aligned_cols=90 Identities=14% Similarity=0.093 Sum_probs=42.2
Q ss_pred eEEEEECCCcEEEEECCCC--eee--eeecCCCCeEEEEEeeCCCCEEEEEEcCC-----------cEEEEeCCCCcEEE
Q 005352 367 YLLSASIDKTVRLWRVGND--HCL--RVFPHSNYVTCVHFNPVDDNYFISGSIDG-----------KVRIWAVLSCHVVD 431 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~--~~~--~~~~h~~~V~~l~f~p~~~~~l~sgs~dg-----------~v~iwd~~~~~~~~ 431 (701)
+++.|..+..+.++|+... +.. ..+............- ++.+++.|+... .+..||..+.+-..
T Consensus 42 yv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~-~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~ 120 (376)
T PRK14131 42 YVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFI-DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQK 120 (376)
T ss_pred EEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEE-CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEe
Confidence 4444444556777887532 222 1121111111111222 567777777542 47788887765443
Q ss_pred EecC-CCcEE-EEEEe-eCCCeEEEEecC
Q 005352 432 WVDI-RQIVT-AVCYR-PDGQGGIVGSMM 457 (701)
Q Consensus 432 ~~~~-~~~i~-~i~~s-p~g~~l~~gs~d 457 (701)
.... ..... ..+.. -+++..+.|+.+
T Consensus 121 ~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 121 LDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 3211 11111 11222 467777777754
No 500
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=51.74 E-value=2.8e+02 Score=28.37 Aligned_cols=149 Identities=13% Similarity=0.037 Sum_probs=77.2
Q ss_pred CEEEEEEcCCcEEEEeCCCC-cEEEEecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeee---------eeeE
Q 005352 408 NYFISGSIDGKVRIWAVLSC-HVVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLEL---------DAEI 476 (701)
Q Consensus 408 ~~l~sgs~dg~v~iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~---------~~~~ 476 (701)
++|+.|+.+| +.+.++... ...........|+++...+.-+.|++-+ ....++.|++..-.... ....
T Consensus 14 ~~lL~GTe~G-ly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~ 92 (302)
T smart00036 14 KWLLVGTEEG-LYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKN 92 (302)
T ss_pred cEEEEEeCCc-eEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccccc
Confidence 5899999888 455556542 2233334466899999998777666654 34459999985332100 0000
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeeccc--------CCCCeEEEEEecC--CCEEEE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLR--------RSGNQLSACFTSD--GKHIVS 546 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~--------~~~~v~~l~~s~d--g~~l~s 546 (701)
.. ....+......+.........++++....+|.++...+....+.... ...++..+..+++ ...|+.
T Consensus 93 ~~--~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 93 VL--TKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred ce--EeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 00 11122232333444432334556666777888875444333332221 1223333333333 456777
Q ss_pred EeCCCcEEEEeCC
Q 005352 547 AGEDSNVYMWNCI 559 (701)
Q Consensus 547 gs~Dg~I~iWd~~ 559 (701)
|+..+-..++++.
T Consensus 171 G~~~~~~~~~~~~ 183 (302)
T smart00036 171 GSDKGGGDVVQFH 183 (302)
T ss_pred EEcCCCCeEEEEe
Confidence 7664335555553
Done!