Query 005352
Match_columns 701
No_of_seqs 847 out of 5205
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 22:55:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 1.2E-43 4.1E-48 404.1 44.8 442 208-694 25-609 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 7.3E-41 2.5E-45 378.3 44.0 457 201-696 14-539 (577)
3 2ymu_A WD-40 repeat protein; u 100.0 5.5E-40 1.9E-44 371.2 42.5 396 202-693 179-577 (577)
4 3sfz_A APAF-1, apoptotic pepti 100.0 8.1E-39 2.8E-43 394.3 39.9 451 201-694 613-1156(1249)
5 1vyh_C Platelet-activating fac 100.0 2.4E-38 8.2E-43 342.3 36.1 286 244-640 102-409 (410)
6 1got_B GT-beta; complex (GTP-b 100.0 4.6E-37 1.6E-41 323.6 40.6 285 200-557 52-340 (340)
7 3ow8_A WD repeat-containing pr 100.0 9.1E-38 3.1E-42 326.0 34.9 286 245-640 27-319 (321)
8 3ow8_A WD repeat-containing pr 100.0 1.4E-37 4.9E-42 324.6 35.8 281 201-558 30-319 (321)
9 1pgu_A Actin interacting prote 100.0 1E-36 3.4E-41 346.6 45.7 420 202-694 17-612 (615)
10 1vyh_C Platelet-activating fac 100.0 9.9E-38 3.4E-42 337.5 35.2 283 198-559 103-410 (410)
11 4g56_B MGC81050 protein; prote 100.0 6.6E-38 2.3E-42 332.2 32.5 269 218-562 21-303 (357)
12 1nr0_A Actin interacting prote 100.0 2.5E-37 8.6E-42 351.9 39.0 407 201-640 57-609 (611)
13 4gqb_B Methylosome protein 50; 100.0 1.4E-37 4.6E-42 327.6 32.4 256 248-562 28-291 (344)
14 2ynn_A Coatomer subunit beta'; 100.0 3E-37 1E-41 319.6 34.0 249 244-562 7-261 (304)
15 1got_B GT-beta; complex (GTP-b 100.0 1.8E-36 6.1E-41 319.0 36.9 283 244-639 49-340 (340)
16 3frx_A Guanine nucleotide-bind 100.0 3.8E-36 1.3E-40 313.6 37.9 249 244-561 11-268 (319)
17 2xzm_R RACK1; ribosome, transl 100.0 5.5E-36 1.9E-40 315.7 39.0 252 244-562 15-287 (343)
18 4gqb_B Methylosome protein 50; 100.0 2E-36 7E-41 318.6 35.5 293 203-563 30-334 (344)
19 3frx_A Guanine nucleotide-bind 100.0 3.5E-36 1.2E-40 313.9 36.8 288 199-561 13-318 (319)
20 2xzm_R RACK1; ribosome, transl 100.0 2.4E-36 8.3E-41 318.4 35.6 290 199-561 17-341 (343)
21 2pbi_B Guanine nucleotide-bind 100.0 1.8E-35 6.2E-40 313.1 41.2 291 244-557 58-354 (354)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.2E-36 2.8E-40 314.6 36.8 308 244-648 9-341 (345)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.3E-36 2.2E-40 315.5 35.5 297 201-563 13-338 (345)
24 2hes_X YDR267CP; beta-propelle 100.0 7.1E-36 2.4E-40 313.0 35.0 300 198-560 9-328 (330)
25 3iz6_a 40S ribosomal protein R 100.0 1.4E-36 4.8E-41 325.0 29.2 300 199-562 62-377 (380)
26 4g56_B MGC81050 protein; prote 100.0 1.7E-35 5.9E-40 313.6 34.1 290 202-562 41-345 (357)
27 3sfz_A APAF-1, apoptotic pepti 100.0 5.4E-35 1.8E-39 360.2 43.6 449 201-694 697-1247(1249)
28 2ynn_A Coatomer subunit beta'; 100.0 5.6E-35 1.9E-39 302.5 36.9 283 200-561 10-303 (304)
29 2oaj_A Protein SNI1; WD40 repe 100.0 2.9E-36 9.7E-41 356.4 30.8 405 201-694 15-659 (902)
30 1r5m_A SIR4-interacting protei 100.0 5.8E-36 2E-40 323.5 30.5 339 247-696 42-425 (425)
31 3iz6_a 40S ribosomal protein R 100.0 4.9E-36 1.7E-40 320.7 27.2 295 243-643 59-376 (380)
32 4ery_A WD repeat-containing pr 100.0 7E-35 2.4E-39 302.6 34.5 287 244-641 17-311 (312)
33 2pm9_A Protein WEB1, protein t 100.0 2.6E-36 9E-41 326.0 23.7 341 250-694 12-412 (416)
34 1erj_A Transcriptional repress 100.0 6E-35 2E-39 313.8 34.0 314 248-643 62-390 (393)
35 4ery_A WD repeat-containing pr 100.0 3.8E-34 1.3E-38 297.1 38.2 284 200-559 20-311 (312)
36 2pm9_A Protein WEB1, protein t 100.0 6.4E-35 2.2E-39 315.1 33.6 344 220-642 42-414 (416)
37 2pbi_B Guanine nucleotide-bind 100.0 5E-35 1.7E-39 309.7 31.0 290 345-693 55-354 (354)
38 1erj_A Transcriptional repress 100.0 2.6E-34 9E-39 308.8 36.4 296 201-561 62-390 (393)
39 2hes_X YDR267CP; beta-propelle 100.0 2E-34 7E-39 302.0 31.8 294 244-642 8-328 (330)
40 3zwl_B Eukaryotic translation 100.0 1.3E-33 4.3E-38 299.0 35.6 298 244-694 26-344 (369)
41 2pm7_B Protein transport prote 100.0 1.3E-33 4.4E-38 291.2 34.7 251 245-560 4-285 (297)
42 3dm0_A Maltose-binding peripla 100.0 2.5E-33 8.4E-38 324.1 40.7 286 198-559 377-692 (694)
43 4aow_A Guanine nucleotide-bind 100.0 3.2E-33 1.1E-37 292.9 37.4 250 244-562 32-288 (340)
44 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-33 4.7E-38 299.6 33.5 252 246-560 4-274 (372)
45 4aow_A Guanine nucleotide-bind 100.0 3.9E-33 1.3E-37 292.2 36.4 289 199-562 34-339 (340)
46 3vl1_A 26S proteasome regulato 100.0 6.7E-34 2.3E-38 307.8 31.2 330 206-642 61-419 (420)
47 1gxr_A ESG1, transducin-like e 100.0 1.3E-32 4.4E-37 287.5 39.0 283 201-558 49-335 (337)
48 1sq9_A Antiviral protein SKI8; 100.0 2.8E-33 9.7E-38 300.3 34.3 302 200-562 13-397 (397)
49 1gxr_A ESG1, transducin-like e 100.0 5.5E-34 1.9E-38 297.9 27.9 318 249-694 8-335 (337)
50 2oaj_A Protein SNI1; WD40 repe 100.0 8.4E-34 2.9E-38 335.3 32.6 245 246-557 13-309 (902)
51 3dwl_C Actin-related protein 2 100.0 5.4E-34 1.8E-38 304.0 26.4 251 246-560 7-281 (377)
52 3mkq_A Coatomer beta'-subunit; 100.0 5.4E-33 1.8E-37 327.1 37.4 283 201-562 11-304 (814)
53 1r5m_A SIR4-interacting protei 100.0 2.8E-33 9.5E-38 302.4 31.8 343 202-641 44-424 (425)
54 3dm0_A Maltose-binding peripla 100.0 1.3E-32 4.4E-37 318.1 38.0 250 244-562 376-634 (694)
55 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-33 3.7E-38 313.3 27.5 289 349-696 202-517 (524)
56 3vl1_A 26S proteasome regulato 100.0 3.4E-33 1.2E-37 302.2 30.3 332 252-695 58-418 (420)
57 3k26_A Polycomb protein EED; W 100.0 2.9E-33 9.8E-38 296.1 28.4 292 201-560 16-366 (366)
58 3v7d_B Cell division control p 100.0 2.1E-32 7.2E-37 300.5 36.2 318 244-693 115-460 (464)
59 3gre_A Serine/threonine-protei 100.0 5.2E-33 1.8E-37 302.8 29.6 252 245-562 57-361 (437)
60 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-32 5.4E-37 323.2 35.4 249 244-562 7-261 (814)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.3E-32 2.5E-36 294.7 36.3 324 244-695 112-441 (445)
62 3i2n_A WD repeat-containing pr 100.0 1.4E-32 4.7E-37 290.0 29.3 291 201-562 16-355 (357)
63 3bg1_A Protein SEC13 homolog; 100.0 6.7E-33 2.3E-37 288.5 25.8 250 245-560 8-293 (316)
64 3ei3_B DNA damage-binding prot 100.0 4.2E-32 1.4E-36 290.2 32.6 292 197-560 67-382 (383)
65 1pgu_A Actin interacting prote 100.0 8E-32 2.7E-36 306.2 35.9 406 247-695 15-571 (615)
66 3i2n_A WD repeat-containing pr 100.0 3E-32 1E-36 287.4 29.2 247 245-562 13-293 (357)
67 3jrp_A Fusion protein of prote 100.0 1.2E-31 4.1E-36 285.0 33.8 254 244-562 5-289 (379)
68 4e54_B DNA damage-binding prot 100.0 5.1E-32 1.7E-36 295.1 30.7 306 346-694 111-428 (435)
69 3ei3_B DNA damage-binding prot 100.0 8.7E-32 3E-36 287.7 31.7 292 244-642 67-382 (383)
70 3zwl_B Eukaryotic translation 100.0 6.5E-31 2.2E-35 278.1 37.8 282 200-562 29-348 (369)
71 4h5i_A Guanine nucleotide-exch 100.0 3.7E-32 1.3E-36 288.8 28.3 309 208-578 21-361 (365)
72 4e54_B DNA damage-binding prot 100.0 2.5E-32 8.4E-37 297.6 27.3 293 245-644 114-432 (435)
73 4aez_A CDC20, WD repeat-contai 100.0 2.1E-31 7.1E-36 287.0 34.2 277 206-563 96-383 (401)
74 4a11_B DNA excision repair pro 100.0 1.4E-32 4.7E-37 295.4 24.9 366 219-695 19-404 (408)
75 3v7d_B Cell division control p 100.0 1.3E-30 4.6E-35 286.1 41.1 279 198-562 116-423 (464)
76 1sq9_A Antiviral protein SKI8; 100.0 3.9E-32 1.3E-36 291.5 27.1 319 244-643 10-396 (397)
77 3f3f_A Nucleoporin SEH1; struc 100.0 2.6E-31 9E-36 278.1 32.5 255 244-563 5-340 (351)
78 3k26_A Polycomb protein EED; W 100.0 7.6E-32 2.6E-36 285.1 28.4 302 246-641 14-365 (366)
79 3odt_A Protein DOA1; ubiquitin 100.0 4.9E-31 1.7E-35 272.6 33.4 286 243-648 11-302 (313)
80 1k8k_C P40, ARP2/3 complex 41 100.0 3.5E-31 1.2E-35 281.1 32.9 285 202-562 7-363 (372)
81 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-30 4.5E-35 269.4 36.2 283 199-563 14-299 (313)
82 3dwl_C Actin-related protein 2 100.0 5.1E-32 1.7E-36 288.7 25.7 285 203-558 11-377 (377)
83 4gga_A P55CDC, cell division c 100.0 1.1E-30 3.8E-35 283.1 36.3 277 207-562 109-397 (420)
84 2j04_B YDR362CP, TAU91; beta p 100.0 6E-32 2.1E-36 299.3 24.2 284 214-561 174-518 (524)
85 2aq5_A Coronin-1A; WD40 repeat 100.0 2.4E-31 8.3E-36 286.4 28.2 287 208-562 39-344 (402)
86 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.7E-29 9.3E-34 274.2 43.5 332 184-561 98-443 (445)
87 4h5i_A Guanine nucleotide-exch 100.0 1.4E-31 4.8E-36 284.4 24.5 251 250-562 14-302 (365)
88 3gre_A Serine/threonine-protei 100.0 4.8E-31 1.6E-35 287.2 29.3 298 201-557 61-437 (437)
89 4ggc_A P55CDC, cell division c 100.0 5.7E-30 1.9E-34 265.4 35.9 277 207-562 29-317 (318)
90 3mmy_A MRNA export factor; mRN 100.0 2.3E-30 8E-35 273.7 32.7 286 244-639 33-343 (368)
91 4a11_B DNA excision repair pro 100.0 5.3E-30 1.8E-34 275.2 33.2 296 345-695 34-364 (408)
92 1p22_A F-BOX/WD-repeat protein 100.0 6.9E-30 2.4E-34 278.2 32.9 273 201-563 131-417 (435)
93 3f3f_A Nucleoporin SEH1; struc 100.0 6.8E-30 2.3E-34 267.4 29.4 299 348-694 5-335 (351)
94 3dw8_B Serine/threonine-protei 100.0 6.8E-30 2.3E-34 278.6 30.2 261 248-563 26-376 (447)
95 1yfq_A Cell cycle arrest prote 100.0 1.2E-29 4.2E-34 266.0 29.9 282 201-558 9-322 (342)
96 1yfq_A Cell cycle arrest prote 100.0 5.3E-30 1.8E-34 268.7 27.1 248 246-562 7-284 (342)
97 4gga_A P55CDC, cell division c 100.0 6.4E-29 2.2E-33 269.2 35.2 288 252-649 107-402 (420)
98 3dw8_B Serine/threonine-protei 100.0 4.8E-29 1.7E-33 271.8 33.8 325 203-558 28-444 (447)
99 4aez_A CDC20, WD repeat-contai 100.0 1.7E-29 5.8E-34 272.0 29.6 289 248-649 89-387 (401)
100 3jro_A Fusion protein of prote 100.0 1.2E-29 4.2E-34 295.2 29.7 254 244-562 3-287 (753)
101 2pm7_B Protein transport prote 100.0 7.3E-29 2.5E-33 255.6 31.7 247 201-517 7-284 (297)
102 4ggc_A P55CDC, cell division c 100.0 3.1E-28 1E-32 252.4 35.1 282 253-644 28-317 (318)
103 3mmy_A MRNA export factor; mRN 100.0 9.2E-29 3.2E-33 261.4 31.7 291 200-562 36-348 (368)
104 2j04_A TAU60, YPL007P, hypothe 100.0 1.6E-29 5.6E-34 273.2 25.4 314 249-685 14-350 (588)
105 1p22_A F-BOX/WD-repeat protein 100.0 2.4E-28 8.2E-33 266.0 34.7 232 247-562 130-367 (435)
106 2xyi_A Probable histone-bindin 100.0 1.7E-28 5.8E-33 266.8 29.8 258 245-561 123-411 (430)
107 3bg1_A Protein SEC13 homolog; 100.0 6.1E-29 2.1E-33 258.6 23.9 245 201-517 11-292 (316)
108 2aq5_A Coronin-1A; WD40 repeat 100.0 9.7E-28 3.3E-32 258.3 28.7 243 253-562 37-301 (402)
109 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.4E-27 1.5E-31 257.2 33.7 249 247-561 99-392 (450)
110 4gq1_A NUP37; propeller, trans 100.0 3.2E-28 1.1E-32 261.2 23.7 253 249-559 88-388 (393)
111 3vu4_A KMHSV2; beta-propeller 100.0 3.7E-27 1.3E-31 249.3 31.1 310 245-645 14-339 (355)
112 3jrp_A Fusion protein of prote 100.0 1.2E-27 4.2E-32 254.0 26.1 255 345-641 2-286 (379)
113 3lrv_A PRE-mRNA-splicing facto 100.0 9.5E-28 3.2E-32 252.6 23.1 274 210-560 45-333 (343)
114 3bws_A Protein LP49; two-domai 100.0 3.9E-26 1.3E-30 247.9 33.7 277 208-560 129-432 (433)
115 1l0q_A Surface layer protein; 100.0 1.5E-25 5E-30 239.8 35.5 264 216-562 5-277 (391)
116 3bws_A Protein LP49; two-domai 100.0 3.3E-26 1.1E-30 248.4 29.6 328 218-697 94-433 (433)
117 2vdu_B TRNA (guanine-N(7)-)-me 99.9 7.8E-26 2.7E-30 247.3 31.7 290 250-558 4-337 (450)
118 2xyi_A Probable histone-bindin 99.9 1.6E-25 5.4E-30 243.3 30.1 266 199-519 124-411 (430)
119 3jro_A Fusion protein of prote 99.9 6.4E-26 2.2E-30 263.9 28.1 253 348-642 3-285 (753)
120 3lrv_A PRE-mRNA-splicing facto 99.9 2.9E-26 9.9E-31 241.2 22.5 233 256-562 42-294 (343)
121 2w18_A PALB2, fancn, partner a 99.9 1.6E-24 5.6E-29 220.3 31.5 284 253-558 42-355 (356)
122 3vu4_A KMHSV2; beta-propeller 99.9 6.9E-25 2.4E-29 231.8 29.0 275 201-562 17-338 (355)
123 4gq1_A NUP37; propeller, trans 99.9 1.7E-25 5.9E-30 240.0 23.6 272 352-698 87-391 (393)
124 2j04_A TAU60, YPL007P, hypothe 99.9 9.6E-26 3.3E-30 243.9 21.5 228 207-517 21-296 (588)
125 1l0q_A Surface layer protein; 99.9 1.7E-24 5.8E-29 231.5 31.2 248 351-652 29-285 (391)
126 2w18_A PALB2, fancn, partner a 99.9 1.2E-22 4E-27 206.7 27.4 213 250-516 111-355 (356)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.2E-22 4.1E-27 219.3 27.0 258 224-562 94-389 (415)
128 1nir_A Nitrite reductase; hemo 99.9 2.5E-22 8.5E-27 223.9 28.8 337 207-650 143-522 (543)
129 1k32_A Tricorn protease; prote 99.9 7.4E-22 2.5E-26 238.3 32.1 410 206-695 17-501 (1045)
130 1ri6_A Putative isomerase YBHE 99.9 1.4E-21 4.8E-26 204.2 29.3 273 219-559 11-307 (343)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 8.6E-21 2.9E-25 204.8 31.9 235 223-541 159-409 (415)
132 1nir_A Nitrite reductase; hemo 99.9 2.5E-20 8.5E-25 207.7 30.2 328 257-694 144-512 (543)
133 2ecf_A Dipeptidyl peptidase IV 99.9 3.9E-21 1.3E-25 223.6 23.9 261 250-559 36-366 (741)
134 1k32_A Tricorn protease; prote 99.9 1.3E-19 4.6E-24 218.5 34.8 320 207-562 58-463 (1045)
135 2ojh_A Uncharacterized protein 99.9 2.8E-20 9.7E-25 189.4 24.1 251 219-551 18-293 (297)
136 3hfq_A Uncharacterized protein 99.9 1.6E-19 5.5E-24 189.7 30.4 272 221-559 14-316 (347)
137 3u4y_A Uncharacterized protein 99.9 3.8E-19 1.3E-23 185.3 30.0 270 216-562 13-306 (331)
138 1pby_B Quinohemoprotein amine 99.8 1.2E-19 4E-24 189.1 23.7 270 215-562 3-312 (337)
139 2ecf_A Dipeptidyl peptidase IV 99.8 1E-19 3.5E-24 211.6 25.0 280 207-560 42-413 (741)
140 3u4y_A Uncharacterized protein 99.8 1.1E-18 3.7E-23 181.8 28.1 202 353-562 39-254 (331)
141 3scy_A Hypothetical bacterial 99.8 1.5E-17 5.3E-22 175.5 34.4 269 220-559 24-336 (361)
142 1ri6_A Putative isomerase YBHE 99.8 1.1E-18 3.8E-23 182.1 23.8 203 353-560 36-262 (343)
143 2z3z_A Dipeptidyl aminopeptida 99.8 1.5E-18 5.1E-23 200.6 27.2 241 251-562 82-393 (706)
144 2z3z_A Dipeptidyl aminopeptida 99.8 1.4E-18 4.7E-23 200.9 26.8 288 206-562 84-437 (706)
145 2ojh_A Uncharacterized protein 99.8 2.5E-18 8.5E-23 174.9 25.6 199 351-562 38-260 (297)
146 2oit_A Nucleoporin 214KDA; NH2 99.8 2.8E-18 9.7E-23 185.8 27.4 208 207-468 42-279 (434)
147 3vgz_A Uncharacterized protein 99.8 2E-17 6.7E-22 173.6 30.5 243 249-562 39-305 (353)
148 1xfd_A DIP, dipeptidyl aminope 99.8 5.2E-19 1.8E-23 205.1 19.6 238 252-557 18-341 (723)
149 1xfd_A DIP, dipeptidyl aminope 99.8 6E-18 2.1E-22 196.1 28.3 276 208-561 23-394 (723)
150 3vgz_A Uncharacterized protein 99.8 3.8E-17 1.3E-21 171.4 31.1 270 208-551 47-335 (353)
151 1pby_B Quinohemoprotein amine 99.8 1.6E-18 5.4E-23 180.5 19.6 241 356-652 35-320 (337)
152 2oit_A Nucleoporin 214KDA; NH2 99.8 3.7E-18 1.3E-22 185.0 22.4 258 250-559 36-332 (434)
153 3o4h_A Acylamino-acid-releasin 99.8 8E-18 2.7E-22 190.0 23.6 263 207-560 27-315 (582)
154 1jmx_B Amine dehydrogenase; ox 99.8 1.6E-17 5.5E-22 173.8 22.0 240 255-562 4-327 (349)
155 3o4h_A Acylamino-acid-releasin 99.8 1.7E-17 5.7E-22 187.4 23.4 232 249-558 20-274 (582)
156 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.7E-16 5.9E-21 168.0 25.5 272 223-561 14-342 (365)
157 3hfq_A Uncharacterized protein 99.7 1.3E-15 4.4E-20 159.7 26.2 201 353-560 38-271 (347)
158 1z68_A Fibroblast activation p 99.7 5.7E-17 2E-21 187.8 15.2 242 255-562 20-348 (719)
159 1q7f_A NHL, brain tumor CG1071 99.7 7.5E-14 2.5E-18 142.0 34.0 246 248-562 27-282 (286)
160 3pe7_A Oligogalacturonate lyas 99.7 1.9E-15 6.3E-20 160.9 22.5 279 207-559 41-381 (388)
161 1jmx_B Amine dehydrogenase; ox 99.7 1E-15 3.5E-20 160.0 18.7 236 360-649 5-332 (349)
162 1z68_A Fibroblast activation p 99.7 5.1E-16 1.7E-20 179.8 17.9 198 359-562 20-293 (719)
163 3scy_A Hypothetical bacterial 99.7 3.6E-14 1.2E-18 149.6 30.5 270 207-538 55-360 (361)
164 4a5s_A Dipeptidyl peptidase 4 99.7 1.4E-15 4.8E-20 176.6 21.2 250 252-563 18-356 (740)
165 3pe7_A Oligogalacturonate lyas 99.7 5.2E-15 1.8E-19 157.5 22.2 246 246-562 26-331 (388)
166 2oiz_A Aromatic amine dehydrog 99.6 2.5E-14 8.4E-19 151.0 23.7 271 221-561 29-335 (361)
167 1jof_A Carboxy-CIS,CIS-muconat 99.6 2.5E-14 8.6E-19 151.3 23.2 198 355-559 40-290 (365)
168 3fvz_A Peptidyl-glycine alpha- 99.6 7.3E-13 2.5E-17 137.8 31.7 202 352-562 88-324 (329)
169 3azo_A Aminopeptidase; POP fam 99.6 1.2E-13 4E-18 158.3 26.5 204 353-562 128-371 (662)
170 2dg1_A DRP35, lactonase; beta 99.6 1.8E-12 6.1E-17 134.8 31.4 269 207-550 9-300 (333)
171 4a5s_A Dipeptidyl peptidase 4 99.6 1.6E-13 5.4E-18 159.3 25.6 265 208-548 23-381 (740)
172 3azo_A Aminopeptidase; POP fam 99.6 1.9E-13 6.4E-18 156.6 23.7 244 245-558 18-321 (662)
173 3c5m_A Oligogalacturonate lyas 99.6 7.5E-14 2.5E-18 148.6 18.9 292 207-562 41-386 (396)
174 2bkl_A Prolyl endopeptidase; m 99.5 3.4E-13 1.2E-17 155.3 24.1 282 210-562 76-399 (695)
175 3e5z_A Putative gluconolactona 99.5 2.5E-12 8.4E-17 131.5 27.8 240 245-562 22-288 (296)
176 2xdw_A Prolyl endopeptidase; a 99.5 2E-12 6.9E-17 149.3 30.2 245 248-562 122-416 (710)
177 3dsm_A Uncharacterized protein 99.5 6.6E-12 2.3E-16 130.5 29.4 266 219-562 13-303 (328)
178 2gop_A Trilobed protease; beta 99.5 2.6E-12 8.9E-17 134.3 26.3 239 222-559 42-330 (347)
179 3c5m_A Oligogalacturonate lyas 99.5 2E-13 7E-18 145.2 17.0 192 359-562 85-331 (396)
180 1rwi_B Serine/threonine-protei 99.5 5.6E-12 1.9E-16 126.6 25.4 239 252-562 25-266 (270)
181 1q7f_A NHL, brain tumor CG1071 99.5 2.2E-11 7.5E-16 123.6 27.7 231 212-518 40-280 (286)
182 2oiz_A Aromatic amine dehydrog 99.5 3.6E-12 1.2E-16 134.3 21.9 242 359-649 54-343 (361)
183 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 7.2E-11 2.5E-15 121.2 30.1 248 249-561 16-300 (314)
184 3fvz_A Peptidyl-glycine alpha- 99.4 9.3E-12 3.2E-16 129.4 22.9 248 354-643 23-323 (329)
185 2dg1_A DRP35, lactonase; beta 99.4 1E-11 3.5E-16 129.0 22.7 200 349-559 39-262 (333)
186 2gop_A Trilobed protease; beta 99.4 3.5E-11 1.2E-15 125.6 25.0 183 355-560 59-291 (347)
187 2z2n_A Virginiamycin B lyase; 99.4 6.1E-10 2.1E-14 113.1 32.4 236 248-558 12-253 (299)
188 1qks_A Cytochrome CD1 nitrite 99.4 4.4E-10 1.5E-14 124.8 33.2 272 215-561 169-478 (567)
189 2z2n_A Virginiamycin B lyase; 99.4 8.1E-10 2.8E-14 112.2 32.8 274 206-562 17-297 (299)
190 3no2_A Uncharacterized protein 99.4 7.5E-11 2.6E-15 119.1 24.3 210 261-548 4-231 (276)
191 3dsm_A Uncharacterized protein 99.4 4.2E-11 1.4E-15 124.3 23.0 242 356-650 45-309 (328)
192 1yr2_A Prolyl oligopeptidase; 99.4 4.6E-11 1.6E-15 138.5 25.4 240 248-562 160-443 (741)
193 2mad_H Methylamine dehydrogena 99.4 1.8E-09 6.1E-14 113.9 33.9 269 224-563 48-353 (373)
194 1qks_A Cytochrome CD1 nitrite 99.3 1.7E-09 5.8E-14 120.1 33.4 230 260-562 165-423 (567)
195 2bkl_A Prolyl endopeptidase; m 99.3 1.4E-10 4.6E-15 133.5 23.1 195 352-559 118-348 (695)
196 1rwi_B Serine/threonine-protei 99.3 3E-10 1E-14 113.8 22.1 195 356-561 25-223 (270)
197 3e5z_A Putative gluconolactona 99.3 2.3E-10 8E-15 116.6 21.0 238 393-691 26-282 (296)
198 2qc5_A Streptogramin B lactona 99.3 9.6E-09 3.3E-13 104.2 32.4 236 249-558 18-258 (300)
199 2qc5_A Streptogramin B lactona 99.3 7.8E-09 2.7E-13 104.9 31.0 257 219-558 37-298 (300)
200 3no2_A Uncharacterized protein 99.2 4.1E-10 1.4E-14 113.6 20.9 191 363-563 3-198 (276)
201 2xdw_A Prolyl endopeptidase; a 99.2 4.4E-10 1.5E-14 129.6 23.6 201 352-562 122-370 (710)
202 1xip_A Nucleoporin NUP159; bet 99.2 2.6E-10 8.7E-15 119.6 17.9 188 252-505 39-231 (388)
203 3sjl_D Methylamine dehydrogena 99.2 1.6E-09 5.5E-14 113.1 23.5 271 222-562 58-365 (386)
204 1xip_A Nucleoporin NUP159; bet 99.2 1.4E-09 4.8E-14 114.0 22.4 172 209-454 45-231 (388)
205 3hrp_A Uncharacterized protein 99.2 4.4E-09 1.5E-13 112.4 26.5 242 251-558 131-408 (409)
206 3dr2_A Exported gluconolactona 99.2 4.5E-09 1.5E-13 107.7 25.1 233 246-557 40-303 (305)
207 3g4e_A Regucalcin; six bladed 99.2 2.4E-08 8.1E-13 101.8 30.1 231 249-549 11-261 (297)
208 2ghs_A AGR_C_1268P; regucalcin 99.2 2.6E-08 9E-13 103.0 30.8 186 355-549 90-291 (326)
209 3iuj_A Prolyl endopeptidase; h 99.1 2.4E-09 8.2E-14 122.9 23.5 240 248-562 126-407 (693)
210 3c75_H MADH, methylamine dehyd 99.1 4.7E-09 1.6E-13 111.5 22.6 271 223-562 99-404 (426)
211 3sjl_D Methylamine dehydrogena 99.1 6.5E-09 2.2E-13 108.5 22.8 242 360-649 83-370 (386)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 1.4E-08 4.8E-13 103.9 24.8 199 350-562 13-258 (314)
213 2mad_H Methylamine dehydrogena 99.1 8.5E-08 2.9E-12 101.0 30.4 240 359-648 70-356 (373)
214 2qe8_A Uncharacterized protein 99.0 1.4E-08 5E-13 105.8 21.4 201 352-557 64-318 (343)
215 2ece_A 462AA long hypothetical 99.0 1.2E-07 4E-12 99.6 27.6 189 358-548 141-399 (462)
216 3hrp_A Uncharacterized protein 99.0 5.6E-08 1.9E-12 103.8 24.0 204 355-562 131-356 (409)
217 1yr2_A Prolyl oligopeptidase; 99.0 3.6E-08 1.2E-12 114.1 24.1 194 353-559 161-392 (741)
218 3g4e_A Regucalcin; six bladed 98.9 3.1E-07 1.1E-11 93.5 26.7 196 353-562 11-231 (297)
219 3q7m_A Lipoprotein YFGL, BAMB; 98.9 9.1E-07 3.1E-11 93.2 30.5 188 364-562 102-298 (376)
220 3c75_H MADH, methylamine dehyd 98.9 4.3E-08 1.5E-12 104.1 17.2 266 375-694 99-400 (426)
221 1mda_H Methylamine dehydrogena 98.8 3.1E-08 1.1E-12 103.4 13.9 262 224-562 47-348 (368)
222 2ghs_A AGR_C_1268P; regucalcin 98.8 3.9E-06 1.3E-10 86.5 29.5 188 356-559 50-259 (326)
223 3q7m_A Lipoprotein YFGL, BAMB; 98.7 3.4E-06 1.2E-10 88.7 26.2 180 365-562 143-339 (376)
224 3dr2_A Exported gluconolactona 98.7 2E-06 6.8E-11 87.8 22.4 198 345-559 35-266 (305)
225 3iuj_A Prolyl endopeptidase; h 98.6 2.1E-06 7E-11 98.4 23.0 231 208-519 135-406 (693)
226 2hz6_A Endoplasmic reticulum t 98.6 2.5E-08 8.4E-13 105.1 6.0 202 261-542 8-216 (369)
227 2qe8_A Uncharacterized protein 98.6 1.9E-06 6.4E-11 89.6 20.2 201 247-512 63-315 (343)
228 2iwa_A Glutamine cyclotransfer 98.6 5.8E-06 2E-10 81.6 22.4 202 252-518 22-237 (266)
229 1kb0_A Quinohemoprotein alcoho 98.6 2.7E-06 9.4E-11 96.8 22.2 187 374-563 189-510 (677)
230 2hz6_A Endoplasmic reticulum t 98.6 6.9E-09 2.4E-13 109.4 0.5 180 365-562 9-194 (369)
231 1yiq_A Quinohemoprotein alcoho 98.6 2.6E-06 8.7E-11 97.2 21.6 188 373-563 181-508 (689)
232 2iwa_A Glutamine cyclotransfer 98.6 1.1E-05 3.9E-10 79.5 23.4 199 356-562 22-239 (266)
233 1npe_A Nidogen, entactin; glyc 98.6 6.4E-05 2.2E-09 74.7 29.3 197 355-562 36-240 (267)
234 1mda_H Methylamine dehydrogena 98.5 5.8E-07 2E-11 93.8 13.7 257 376-694 47-344 (368)
235 1fwx_A Nitrous oxide reductase 98.5 2.9E-06 9.8E-11 92.3 19.1 186 374-562 174-433 (595)
236 2ece_A 462AA long hypothetical 98.5 9.1E-06 3.1E-10 85.4 21.4 232 213-506 95-399 (462)
237 1kb0_A Quinohemoprotein alcoho 98.5 3.4E-06 1.2E-10 96.0 19.8 192 365-559 128-422 (677)
238 2fp8_A Strictosidine synthase; 98.5 2.2E-05 7.5E-10 80.6 23.9 198 356-562 81-315 (322)
239 3nol_A Glutamine cyclotransfer 98.5 3.3E-05 1.1E-09 75.3 23.2 186 356-549 44-244 (262)
240 1yiq_A Quinohemoprotein alcoho 98.5 1.3E-05 4.6E-10 91.2 23.8 180 359-549 239-538 (689)
241 1fwx_A Nitrous oxide reductase 98.5 2.3E-06 8E-11 93.0 16.0 186 365-560 100-361 (595)
242 1npe_A Nidogen, entactin; glyc 98.4 0.00042 1.4E-08 68.7 31.1 176 355-542 79-263 (267)
243 3hxj_A Pyrrolo-quinoline quino 98.4 2.4E-06 8.1E-11 87.8 14.8 180 356-558 61-242 (330)
244 3hxj_A Pyrrolo-quinoline quino 98.4 2E-05 6.8E-10 80.8 20.9 186 357-562 139-326 (330)
245 3nok_A Glutaminyl cyclase; bet 98.4 3.2E-05 1.1E-09 75.4 20.6 187 252-505 56-253 (268)
246 3nol_A Glutamine cyclotransfer 98.3 6.7E-05 2.3E-09 73.1 21.6 188 253-507 45-244 (262)
247 3mbr_X Glutamine cyclotransfer 98.3 0.00022 7.6E-09 68.8 24.8 188 355-549 21-223 (243)
248 3nok_A Glutaminyl cyclase; bet 98.3 9E-05 3.1E-09 72.2 21.7 184 355-548 55-253 (268)
249 4a2l_A BT_4663, two-component 98.3 0.0011 3.9E-08 76.9 35.5 199 354-562 356-573 (795)
250 4a2l_A BT_4663, two-component 98.3 0.0011 3.6E-08 77.2 35.0 198 354-562 309-528 (795)
251 3qqz_A Putative uncharacterize 98.3 0.00022 7.6E-09 69.8 24.5 207 349-558 21-251 (255)
252 3mbr_X Glutamine cyclotransfer 98.3 0.00021 7.1E-09 69.0 23.8 189 251-505 21-222 (243)
253 2p4o_A Hypothetical protein; p 98.3 0.00084 2.9E-08 68.1 29.6 185 356-551 73-279 (306)
254 3v9f_A Two-component system se 98.2 0.0041 1.4E-07 72.0 36.8 195 354-561 312-525 (781)
255 1kv9_A Type II quinohemoprotei 98.1 0.0001 3.4E-09 83.7 20.0 193 365-563 66-336 (668)
256 1kv9_A Type II quinohemoprotei 98.1 0.00015 5.2E-09 82.3 20.5 187 374-563 177-491 (668)
257 2ad6_A Methanol dehydrogenase 98.1 0.0004 1.4E-08 77.1 23.5 195 365-562 160-496 (571)
258 2p4o_A Hypothetical protein; p 98.1 0.00085 2.9E-08 68.1 24.1 201 355-559 32-241 (306)
259 4hw6_A Hypothetical protein, I 98.0 0.001 3.6E-08 71.0 25.0 205 355-559 182-432 (433)
260 3v9f_A Two-component system se 98.0 0.0048 1.7E-07 71.4 32.4 198 355-562 363-570 (781)
261 3v64_C Agrin; beta propeller, 98.0 0.0054 1.8E-07 63.4 29.0 199 355-562 73-277 (349)
262 3tc9_A Hypothetical hydrolase; 98.0 0.0013 4.5E-08 70.2 24.9 204 355-559 179-429 (430)
263 1k3i_A Galactose oxidase precu 97.9 0.00019 6.4E-09 81.5 18.5 203 357-562 245-499 (656)
264 1w6s_A Methanol dehydrogenase 97.9 0.0017 5.7E-08 72.2 25.3 187 373-563 180-506 (599)
265 1ijq_A LDL receptor, low-densi 97.9 0.011 3.8E-07 60.0 29.8 199 355-562 30-240 (316)
266 2fp8_A Strictosidine synthase; 97.9 0.0022 7.5E-08 65.4 24.5 190 355-558 19-267 (322)
267 3v65_B Low-density lipoprotein 97.9 0.0037 1.3E-07 65.6 26.3 200 354-562 115-320 (386)
268 2ad6_A Methanol dehydrogenase 97.9 0.0031 1E-07 70.0 26.2 154 365-522 115-339 (571)
269 1w6s_A Methanol dehydrogenase 97.8 0.0038 1.3E-07 69.3 25.3 152 368-523 124-347 (599)
270 1k3i_A Galactose oxidase precu 97.8 0.00059 2E-08 77.4 19.1 183 360-549 292-530 (656)
271 3kya_A Putative phosphatase; s 97.8 0.0067 2.3E-07 65.1 26.0 208 355-562 186-477 (496)
272 2xe4_A Oligopeptidase B; hydro 97.8 0.0013 4.5E-08 75.7 22.2 194 358-562 224-460 (751)
273 1ijq_A LDL receptor, low-densi 97.8 0.0062 2.1E-07 62.0 24.3 180 374-561 9-196 (316)
274 3qqz_A Putative uncharacterize 97.8 0.011 3.6E-07 57.8 24.7 204 244-515 20-250 (255)
275 3v64_C Agrin; beta propeller, 97.8 0.0072 2.5E-07 62.5 25.0 197 356-561 35-235 (349)
276 3sov_A LRP-6, low-density lipo 97.7 0.012 4.2E-07 59.8 26.0 199 356-563 36-241 (318)
277 3p5b_L Low density lipoprotein 97.7 0.027 9.3E-07 59.2 29.3 203 352-563 109-323 (400)
278 1flg_A Protein (quinoprotein e 97.6 0.015 5.2E-07 64.5 26.1 194 365-563 68-358 (582)
279 3p5b_L Low density lipoprotein 97.6 0.014 4.7E-07 61.6 24.6 187 367-562 85-279 (400)
280 1flg_A Protein (quinoprotein e 97.6 0.01 3.5E-07 65.8 24.3 144 417-563 291-519 (582)
281 2p9w_A MAL S 1 allergenic prot 97.6 0.039 1.3E-06 55.5 25.8 203 352-559 10-264 (334)
282 3v65_B Low-density lipoprotein 97.5 0.011 3.7E-07 62.1 22.7 194 359-561 81-278 (386)
283 2xe4_A Oligopeptidase B; hydro 97.5 0.0054 1.8E-07 70.6 21.0 194 356-558 175-398 (751)
284 3tc9_A Hypothetical hydrolase; 97.4 0.0046 1.6E-07 65.9 17.6 156 396-560 138-301 (430)
285 3amr_A 3-phytase; beta-propell 97.4 0.083 2.8E-06 53.6 25.5 182 367-559 42-262 (355)
286 3m0c_C LDL receptor, low-densi 97.3 0.1 3.5E-06 59.7 29.0 205 350-563 419-635 (791)
287 3ei3_A DNA damage-binding prot 97.3 0.29 9.9E-06 58.6 33.6 323 204-562 514-915 (1158)
288 3sov_A LRP-6, low-density lipo 97.3 0.15 5.2E-06 51.5 26.7 151 356-517 80-237 (318)
289 4hw6_A Hypothetical protein, I 97.2 0.017 5.8E-07 61.5 19.7 195 356-558 140-372 (433)
290 2xzh_A Clathrin heavy chain 1; 97.2 0.23 7.7E-06 49.6 30.7 239 257-562 73-334 (365)
291 3amr_A 3-phytase; beta-propell 97.1 0.091 3.1E-06 53.3 22.0 111 355-466 128-262 (355)
292 4a0p_A LRP6, LRP-6, low-densit 97.0 0.29 9.8E-06 54.6 28.5 198 355-563 37-240 (628)
293 3m0c_C LDL receptor, low-densi 97.0 0.092 3.1E-06 60.1 24.8 182 373-562 402-591 (791)
294 2p9w_A MAL S 1 allergenic prot 97.0 0.022 7.6E-07 57.3 16.8 166 393-560 11-215 (334)
295 1bpo_A Protein (clathrin); cla 96.9 0.51 1.7E-05 49.0 30.4 240 256-562 71-333 (494)
296 1n7d_A LDL receptor, low-densi 96.8 0.0037 1.3E-07 71.0 11.1 199 355-562 406-616 (699)
297 2xzh_A Clathrin heavy chain 1; 96.8 0.45 1.6E-05 47.4 23.7 190 362-563 74-293 (365)
298 2ism_A Putative oxidoreductase 96.8 0.38 1.3E-05 49.3 24.9 190 355-548 75-333 (352)
299 3kya_A Putative phosphatase; s 96.8 0.038 1.3E-06 59.3 17.5 158 396-560 140-341 (496)
300 1bpo_A Protein (clathrin); cla 96.7 0.53 1.8E-05 48.9 24.7 178 374-563 85-292 (494)
301 2g8s_A Glucose/sorbosone dehyd 96.7 0.46 1.6E-05 48.8 24.4 67 487-553 271-347 (353)
302 3s94_A LRP-6, low-density lipo 96.7 0.26 9E-06 54.8 24.1 200 355-563 40-246 (619)
303 2xbg_A YCF48-like protein; pho 96.6 0.61 2.1E-05 47.2 24.9 151 354-516 162-320 (327)
304 3pbp_A Nucleoporin NUP82; beta 96.6 0.14 4.8E-06 53.1 19.1 150 406-557 31-209 (452)
305 2xbg_A YCF48-like protein; pho 96.5 0.8 2.7E-05 46.3 33.3 191 355-558 122-320 (327)
306 2xn4_A Kelch-like protein 2; s 96.4 0.18 6.1E-06 50.3 19.4 185 365-562 61-278 (302)
307 3a9g_A Putative uncharacterize 96.3 0.6 2.1E-05 47.9 22.7 189 355-548 73-330 (354)
308 2vpj_A Kelch-like protein 12; 96.3 0.24 8.3E-06 49.3 19.2 181 367-562 65-280 (301)
309 1n7d_A LDL receptor, low-densi 96.1 0.011 3.8E-07 67.1 9.1 179 374-561 385-572 (699)
310 3ii7_A Kelch-like protein 7; p 96.0 0.55 1.9E-05 46.8 20.3 183 365-562 55-274 (306)
311 3ott_A Two-component system se 96.0 3.1 0.0001 47.5 29.1 193 355-562 63-262 (758)
312 4asc_A Kelch repeat and BTB do 95.9 0.8 2.7E-05 45.9 21.0 172 377-561 69-278 (315)
313 3sre_A PON1, serum paraoxonase 95.8 1.5 5.2E-05 44.7 22.5 140 357-506 114-285 (355)
314 1cru_A Protein (soluble quinop 95.7 2.7 9.4E-05 44.5 27.5 56 499-554 369-430 (454)
315 2woz_A Kelch repeat and BTB do 95.6 0.99 3.4E-05 45.2 20.5 131 377-518 80-231 (318)
316 1zgk_A Kelch-like ECH-associat 95.5 0.55 1.9E-05 46.9 17.8 173 375-561 90-288 (308)
317 1tl2_A L10, protein (tachylect 95.4 0.22 7.7E-06 46.7 13.1 180 367-562 6-210 (236)
318 2be1_A Serine/threonine-protei 95.4 1 3.5E-05 45.6 19.3 92 372-464 64-181 (339)
319 3sre_A PON1, serum paraoxonase 95.4 2.8 9.5E-05 42.7 25.4 189 356-556 51-294 (355)
320 3pbp_A Nucleoporin NUP82; beta 95.2 0.45 1.5E-05 49.4 15.9 147 363-514 29-208 (452)
321 3ei3_A DNA damage-binding prot 95.2 7.4 0.00025 46.5 35.5 110 355-466 514-635 (1158)
322 3sbq_A Nitrous-oxide reductase 95.0 0.35 1.2E-05 51.8 14.5 130 431-562 317-480 (638)
323 3s94_A LRP-6, low-density lipo 94.9 5.8 0.0002 43.9 33.3 187 367-562 319-512 (619)
324 1xi4_A Clathrin heavy chain; a 94.9 1.6 5.4E-05 52.3 20.9 204 356-562 107-333 (1630)
325 3a9g_A Putative uncharacterize 94.9 4 0.00014 41.6 23.0 199 354-560 28-296 (354)
326 2ism_A Putative oxidoreductase 94.7 1 3.4E-05 46.2 17.3 106 395-506 31-153 (352)
327 1cru_A Protein (soluble quinop 94.3 1.5 5.2E-05 46.6 17.9 165 395-562 27-261 (454)
328 3ii7_A Kelch-like protein 7; p 94.1 1.2 4.2E-05 44.2 16.0 181 367-561 14-226 (306)
329 3das_A Putative oxidoreductase 94.0 2 7E-05 43.6 17.3 151 394-547 31-219 (347)
330 3das_A Putative oxidoreductase 93.9 6.3 0.00022 39.9 26.5 239 250-548 31-326 (347)
331 2vpj_A Kelch-like protein 12; 93.8 1.8 6.1E-05 42.8 16.7 174 375-562 31-233 (301)
332 2xn4_A Kelch-like protein 2; s 93.8 1.4 4.9E-05 43.6 15.9 173 375-561 30-230 (302)
333 4asc_A Kelch repeat and BTB do 93.5 4.3 0.00015 40.3 19.0 181 367-561 7-222 (315)
334 4a0p_A LRP6, LRP-6, low-densit 93.5 11 0.00038 41.7 39.3 200 355-563 340-552 (628)
335 2be1_A Serine/threonine-protei 93.1 0.16 5.5E-06 51.6 7.3 110 365-474 10-137 (339)
336 1tl2_A L10, protein (tachylect 92.7 0.19 6.6E-06 47.1 6.5 101 355-461 41-157 (236)
337 2uvk_A YJHT; unknown function, 92.7 1.8 6E-05 44.1 14.8 175 375-562 86-344 (357)
338 2g8s_A Glucose/sorbosone dehyd 92.6 2.6 8.7E-05 43.1 15.9 147 395-546 18-214 (353)
339 1xi4_A Clathrin heavy chain; a 91.8 3.2 0.00011 49.8 16.6 190 362-563 73-292 (1630)
340 1zgk_A Kelch-like ECH-associat 90.6 4.6 0.00016 40.0 14.9 172 375-561 39-241 (308)
341 2woz_A Kelch repeat and BTB do 90.5 7.5 0.00026 38.6 16.6 174 376-562 25-233 (318)
342 3b7f_A Glycosyl hydrolase, BNR 90.5 17 0.00059 37.2 20.4 158 355-515 55-259 (394)
343 2zwa_A Leucine carboxyl methyl 89.7 8.9 0.0003 43.1 17.8 147 365-519 451-636 (695)
344 3ott_A Two-component system se 88.9 35 0.0012 38.5 34.7 183 356-557 104-304 (758)
345 2zwa_A Leucine carboxyl methyl 88.9 6.6 0.00022 44.2 16.0 191 367-562 400-637 (695)
346 2rr3_B OSBP, oxysterol-binding 86.2 0.46 1.6E-05 30.7 2.3 20 4-23 13-32 (47)
347 2uvk_A YJHT; unknown function, 86.1 14 0.00048 37.2 15.4 89 365-457 19-128 (357)
348 3uc1_A DNA gyrase subunit A; D 84.4 35 0.0012 34.1 20.1 148 367-517 111-278 (327)
349 3no0_A DNA gyrase subunit A; D 83.7 33 0.0011 33.2 20.9 204 355-560 24-246 (276)
350 3s25_A Hypothetical 7-bladed b 82.4 40 0.0014 33.2 22.1 161 375-562 88-257 (302)
351 3b7f_A Glycosyl hydrolase, BNR 77.5 65 0.0022 32.7 20.0 189 365-556 22-258 (394)
352 3qhy_B Beta-lactamase inhibito 77.2 55 0.0019 31.7 18.7 183 356-562 64-248 (282)
353 3q6k_A 43.2 kDa salivary prote 76.8 69 0.0024 32.6 22.0 170 376-547 124-341 (381)
354 2wg3_C Hedgehog-interacting pr 75.8 83 0.0028 33.1 25.0 29 251-279 14-43 (463)
355 2wg3_C Hedgehog-interacting pr 74.6 33 0.0011 36.2 13.5 114 437-551 14-160 (463)
356 3l6v_A GYRA, DNA gyrase subuni 74.4 78 0.0027 32.1 21.2 194 364-562 5-267 (370)
357 3sbq_A Nitrous-oxide reductase 72.9 22 0.00074 38.3 11.1 117 355-472 323-483 (638)
358 3qhy_B Beta-lactamase inhibito 68.6 87 0.003 30.2 15.5 182 356-561 25-208 (282)
359 3uc1_A DNA gyrase subunit A; D 67.6 1E+02 0.0035 30.6 23.8 205 355-560 42-279 (327)
360 4gq2_M Nucleoporin NUP120; bet 67.5 41 0.0014 39.2 13.3 37 356-392 237-274 (950)
361 1suu_A DNA gyrase subunit A; t 67.1 1E+02 0.0034 30.4 22.9 189 367-561 10-232 (312)
362 1wp5_A Topoisomerase IV; broke 66.4 1.1E+02 0.0036 30.4 27.3 196 365-560 50-277 (323)
363 1sqj_A OXG-RCBH, oligoxylogluc 65.6 98 0.0033 35.1 15.8 159 394-554 14-195 (789)
364 3no0_A DNA gyrase subunit A; D 63.8 1.1E+02 0.0037 29.5 18.8 149 366-518 81-246 (276)
365 4gq2_M Nucleoporin NUP120; bet 62.7 30 0.001 40.3 10.9 40 252-291 237-276 (950)
366 1zi0_A DNA gyrase subunit A; b 61.2 1.3E+02 0.0044 29.5 21.6 189 367-560 5-226 (307)
367 1zi0_A DNA gyrase subunit A; b 57.9 1.4E+02 0.005 29.1 27.0 194 365-560 53-277 (307)
368 3s25_A Hypothetical 7-bladed b 52.8 1.7E+02 0.0059 28.4 24.9 170 361-558 110-291 (302)
369 2cn3_A Xyloglucanase, beta-1,4 46.1 3.3E+02 0.011 30.3 15.8 113 395-508 23-153 (737)
370 1suu_A DNA gyrase subunit A; t 45.6 2.3E+02 0.0078 27.7 27.3 194 365-559 58-282 (312)
371 3f7f_A Nucleoporin NUP120; nuc 42.0 54 0.0018 36.4 7.9 38 251-290 222-259 (729)
372 3l6v_A GYRA, DNA gyrase subuni 42.0 2.8E+02 0.0097 27.9 28.3 206 355-560 46-316 (370)
373 1sqj_A OXG-RCBH, oligoxylogluc 41.7 4.2E+02 0.014 29.8 22.5 156 354-513 14-196 (789)
374 2cn3_A Xyloglucanase, beta-1,4 41.5 4.1E+02 0.014 29.5 19.0 102 356-457 24-153 (737)
375 1wp5_A Topoisomerase IV; broke 40.7 2.8E+02 0.0094 27.3 21.9 192 364-560 3-225 (323)
376 4fhn_B Nucleoporin NUP120; pro 38.8 59 0.002 38.8 8.4 38 396-434 239-276 (1139)
377 3kci_A Probable E3 ubiquitin-p 35.9 3.5E+02 0.012 27.1 26.4 197 357-561 107-346 (389)
378 3a0f_A Xyloglucanase; beta-pro 32.7 5.6E+02 0.019 28.6 16.5 157 393-551 19-203 (763)
379 4fhn_B Nucleoporin NUP120; pro 29.7 30 0.001 41.4 3.7 40 252-291 239-278 (1139)
380 4hvt_A Ritya.17583.B, post-pro 28.7 6.3E+02 0.022 27.9 21.1 227 257-562 136-431 (711)
381 3a0f_A Xyloglucanase; beta-pro 28.6 6.5E+02 0.022 28.0 21.1 153 353-509 19-203 (763)
382 3f7f_A Nucleoporin NUP120; nuc 28.0 86 0.0029 34.8 6.6 37 356-393 223-259 (729)
383 3kci_A Probable E3 ubiquitin-p 27.1 4.9E+02 0.017 26.0 24.2 188 367-560 64-293 (389)
384 4a9v_A PHOX; hydrolase, beta-p 24.2 2.3E+02 0.008 30.5 8.9 60 395-455 476-549 (592)
385 1zvt_A Topoisomerase IV subuni 21.2 5.2E+02 0.018 24.3 14.4 151 408-561 3-164 (256)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-43 Score=404.11 Aligned_cols=442 Identities=17% Similarity=0.186 Sum_probs=316.0
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCee--e
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER--L 285 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~--~ 285 (701)
+++++++.+++++ ++.|++|+.... .....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++. .
T Consensus 25 ~~spdg~~l~~~~-~~~v~l~~~~~~-------~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 25 GNTPAGDKIQYCN-GTSVYTVPVGSL-------TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp EECTTSSEEEEEE-TTEEEEEETTCS-------SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred eeCCCCCEEEeCC-CCEEEEecCCCc-------ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee
Confidence 4556666777765 679999987532 12346788999999999999999999999999999999875432 2
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec-CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT-SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
..+..+.. .+..+.+++.+..++...... ....+..++. ......+.+|...|.+++|+|
T Consensus 97 ~~~~~~~~-------------~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~------~~~~~~l~gh~~~v~~v~f~p 157 (611)
T 1nr0_A 97 TTIPVFSG-------------PVKDISWDSESKRIAAVGEGRERFGHVFLFDT------GTSNGNLTGQARAMNSVDFKP 157 (611)
T ss_dssp EEEECSSS-------------CEEEEEECTTSCEEEEEECCSSCSEEEEETTT------CCBCBCCCCCSSCEEEEEECS
T ss_pred EeecccCC-------------ceEEEEECCCCCEEEEEECCCCceeEEEEeeC------CCCcceecCCCCCceEEEECC
Confidence 23333333 334444444443333221111 1123333332 244567789999999999999
Q ss_pred CC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe--------
Q 005352 365 NN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-------- 433 (701)
Q Consensus 365 ~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-------- 433 (701)
++ .|++++.|++|++||..+++++..+. |...|++++|+| ++++|++++.|++|++||+.+++.+..+
T Consensus 158 ~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~ 236 (611)
T 1nr0_A 158 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 236 (611)
T ss_dssp SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeecccccccc
Confidence 97 69999999999999999998888886 999999999999 9999999999999999999998877554
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE-----------------------------------e
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC-----------------------------------V 478 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~-----------------------------------~ 478 (701)
.|...|.+++|+|++++|++++.|++|++||+.+++........ .
T Consensus 237 ~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~ 316 (611)
T 1nr0_A 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSI 316 (611)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEE
T ss_pred ccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCc
Confidence 58899999999999999999999999999999987654332110 0
Q ss_pred ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec---------------------------------
Q 005352 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG--------------------------------- 525 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~--------------------------------- 525 (701)
......|...|++++|+| ++.+|++++.|+.|++||+.+.......
T Consensus 317 ~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~ 395 (611)
T 1nr0_A 317 DQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA 395 (611)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECS
T ss_pred ceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeec
Confidence 111245778999999999 7999999999999999997642211000
Q ss_pred -------------------------------------------------ccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 526 -------------------------------------------------LRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 526 -------------------------------------------------~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
..+...+.+++|+|+|++|++|+.|+.|++|
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lw 475 (611)
T 1nr0_A 396 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 475 (611)
T ss_dssp SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred CCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEE
Confidence 0123457889999999999999999999999
Q ss_pred eCCCCCCCC---ccccccccccccccCCceEE-ecCCCC-CCCCCCC-CCccc----cCCCCCCCccccCCCccccCccc
Q 005352 557 NCIGHEEPA---HDQAKTIRSLERFTTNASIA-IPWCGL-KCGNAEK-EPQLH----VSDDDSPENLAFAPARFSLGQEY 626 (701)
Q Consensus 557 d~~~~~~~~---~~~~~~~~~~~~~~~~~~~a-~~~~~~-~~~~~~~-~~~~~----~~~~~~~~~l~~sp~~~~~~~~~ 626 (701)
++.++.... ......+..+...+.+..++ ....+. ..|+... ..... ..+...+..++|+|+ +..+
T Consensus 476 d~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspd----g~~l 551 (611)
T 1nr0_A 476 KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD----NVRL 551 (611)
T ss_dssp EEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT----SSEE
T ss_pred EccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCC----CCEE
Confidence 997653110 01112233333333322222 122221 3343332 11111 114456788999998 7889
Q ss_pred cccCCCCcccCCCCccCCC-C-ccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 627 VFESFPKGCATWPEEKLPA-L-SQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 627 ~~~s~d~~~~~W~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
++++.|+.+++|+.+.... + ..+.+|. ...+.+++++++ ++ |+||+.||+||+|+.
T Consensus 552 asgs~D~~v~lW~~~~~~~~~~~~~~~h~----------~~~v~~v~fs~d-~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHA----------MSSVNSVIWLNE-TT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEEETTSCEEEEETTCTTSCCEEETTSST----------TSCEEEEEEEET-TE-EEEEETTSCEEEEEC
T ss_pred EEEECCCcEEEEECCCcccccchhhccCc----------ccCeeEEEEcCC-CE-EEEecCCCCEEEEec
Confidence 9999999999999876542 2 2232330 246788888888 88 999999999999984
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.3e-41 Score=378.34 Aligned_cols=457 Identities=23% Similarity=0.286 Sum_probs=324.8
Q ss_pred cccCcceeee--cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|.+.+.++. +++..+++++.|+.|+||+... ...+.+.+|.+.|++|+|+|||++||+++.|++|+|||
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~--------~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS--------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC--------CEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 4677776654 5567888999999999998432 12246889999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCc----------------------------ceeeeccccceee---------
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSEL----------------------------KPLFMDKEKISIL--------- 321 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~--------- 321 (701)
+ +++.+..+..+...+.++.|.++....+ ..+.+.+....+.
T Consensus 86 ~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 164 (577)
T 2ymu_A 86 R-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 164 (577)
T ss_dssp T-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred C-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccccccee
Confidence 6 5667777776666666655554322110 0000000000000
Q ss_pred -------------------EEeeecCCccEEEc--CC---ccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCc
Q 005352 322 -------------------KSLRRTSESACVVF--PP---KVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKT 376 (701)
Q Consensus 322 -------------------~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~ 376 (701)
.......+...++. .. .+|+...+.+..+.+|...|.+++|+|++ +|++++.|+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 244 (577)
T 2ymu_A 165 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 244 (577)
T ss_dssp EECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred ccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 00000000000000 00 12333456678889999999999999999 9999999999
Q ss_pred EEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEe
Q 005352 377 VRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS 455 (701)
Q Consensus 377 I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs 455 (701)
|++||.. ++.+..+. |...|++++|+| ++++|++++.|+.|++||...........|...|.+++|+|+++.|++++
T Consensus 245 i~~w~~~-~~~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~ 322 (577)
T 2ymu_A 245 VKLWNRN-GQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 322 (577)
T ss_dssp EEEECTT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEeCC-CCEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEe
Confidence 9999965 45555554 899999999999 99999999999999999987655556677899999999999999999999
Q ss_pred cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEE
Q 005352 456 MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSA 535 (701)
Q Consensus 456 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l 535 (701)
.|+.|++||+....... ...+...+.+++|+| ++.++++++.|+.|++||... ........|...|.++
T Consensus 323 ~d~~i~~w~~~~~~~~~---------~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~-~~~~~~~~~~~~v~~~ 391 (577)
T 2ymu_A 323 DDKTVKLWNRNGQHLQT---------LTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGV 391 (577)
T ss_dssp TTSCEEEEETTSCEEEE---------ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTC-CEEEEEECCSSCEEEE
T ss_pred CCCeEEEEeCCCCeeEE---------EeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCC-CEEEEecCCCCCeEEE
Confidence 99999999987654321 234567899999999 789999999999999999653 2233334588999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCCCCC-ccccccccccccccCCceEEe-cCCCC-CCCCCCCCCc-cccCCCCCCC
Q 005352 536 CFTSDGKHIVSAGEDSNVYMWNCIGHEEPA-HDQAKTIRSLERFTTNASIAI-PWCGL-KCGNAEKEPQ-LHVSDDDSPE 611 (701)
Q Consensus 536 ~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~-~~~~~-~~~~~~~~~~-~~~~~~~~~~ 611 (701)
+|+|++++|++++.|+.|++|+........ ......+..+...+.+..++. ..++. ..|+...... ........+.
T Consensus 392 ~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~ 471 (577)
T 2ymu_A 392 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 471 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEE
T ss_pred EECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEE
Confidence 999999999999999999999964322100 011122233333333222222 22221 3343322111 1123345677
Q ss_pred ccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeE
Q 005352 612 NLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRS 691 (701)
Q Consensus 612 ~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irv 691 (701)
.++|+|+ +..+++++.|+.+++|+.. ...+..+.+| .+.|.+++++++ |++||||+.||.||+
T Consensus 472 ~~~~spd----~~~las~~~d~~i~iw~~~-~~~~~~~~~h-----------~~~v~~l~~s~d-g~~l~s~~~dg~v~l 534 (577)
T 2ymu_A 472 GVAFSPD----GQTIASASDDKTVKLWNRN-GQLLQTLTGH-----------SSSVRGVAFSPD-GQTIASASDDKTVKL 534 (577)
T ss_dssp EEEECTT----SCEEEEEETTSEEEEEETT-SCEEEEEECC-----------SSCEEEEEECTT-SSCEEEEETTSEEEE
T ss_pred EEEEcCC----CCEEEEEeCCCEEEEEcCC-CCEEEEEeCC-----------CCCEEEEEEcCC-CCEEEEEECcCEEEE
Confidence 8899997 7788899999999999954 4445666555 467888999999 999999999999999
Q ss_pred EeecC
Q 005352 692 FLNYG 696 (701)
Q Consensus 692 w~~~g 696 (701)
|+.-|
T Consensus 535 wd~~~ 539 (577)
T 2ymu_A 535 WNRNG 539 (577)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 98544
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.5e-40 Score=371.16 Aligned_cols=396 Identities=24% Similarity=0.338 Sum_probs=304.8
Q ss_pred ccCccee--eecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 005352 202 KQGEGER--VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 202 ~~~~~~~--~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 279 (701)
+...+.. +.+++..+++++.|+.|++|+.... ..+.+.+|.+.|.+++|+|++++|++++.|+.|++||.
T Consensus 179 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~--------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~ 250 (577)
T 2ymu_A 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 250 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC--------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred CCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCc--------EEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 3444443 4456677888999999999974321 12457789999999999999999999999999999996
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
+++.+..+..+...+..+.+.+ .+..++. ...+..+.+ |+...+.+..+.+|...|.+
T Consensus 251 -~~~~~~~~~~~~~~v~~v~~~~-------------d~~~l~~---~~~d~~i~~-----w~~~~~~~~~~~~h~~~v~~ 308 (577)
T 2ymu_A 251 -NGQLLQTLTGHSSSVNGVAFRP-------------DGQTIAS---ASDDKTVKL-----WNRNGQLLQTLTGHSSSVWG 308 (577)
T ss_dssp -TSCEEEEECCCSSCEEEEEECT-------------TSSEEEE---EETTSCEEE-----EETTSCEEEEECCCSSCEEE
T ss_pred -CCCEEEEEecCCCCEEEEEEcC-------------CCCEEEE---EeCCCEEEE-----EeCCCcEEEEEecCCCCeEE
Confidence 4455555554444443333332 2222211 112222222 22334667788999999999
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 438 (701)
++|+|++ +|++++.|++|++||+..........|...|.+++|+| ++++|++++.|+.|++||...........|...
T Consensus 309 ~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~ 387 (577)
T 2ymu_A 309 VAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 387 (577)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTCCEEEEEECCSSC
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCC
Confidence 9999999 99999999999999987776655556999999999999 999999999999999999765555567778999
Q ss_pred EEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
|++++|+|++++|++++.|+.|++||....... ....|...|++++|+| ++.+|++++.|+.|++||...
T Consensus 388 v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~---------~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~ 457 (577)
T 2ymu_A 388 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ---------TLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNG 457 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECTTCCEEE---------EEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTS
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEE---------EecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCC
Confidence 999999999999999999999999997543211 1234667899999999 789999999999999999753
Q ss_pred cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCC
Q 005352 519 VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEK 598 (701)
Q Consensus 519 ~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 598 (701)
........|...|.+++|+|++++|++++.|+.|++|+... + .+..+
T Consensus 458 -~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~--------~~~~~----------------------- 504 (577)
T 2ymu_A 458 -QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q--------LLQTL----------------------- 504 (577)
T ss_dssp -CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C--------EEEEE-----------------------
T ss_pred -CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C--------EEEEE-----------------------
Confidence 23333445889999999999999999999999999999532 2 11111
Q ss_pred CCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCcc
Q 005352 599 EPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGL 678 (701)
Q Consensus 599 ~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 678 (701)
..+...+..++|+|+ +..+++++.|+.+++|+.. ...+..+.+| .+.|++++++++ |+
T Consensus 505 -----~~h~~~v~~l~~s~d----g~~l~s~~~dg~v~lwd~~-~~~~~~~~~h-----------~~~v~~~~fs~d-g~ 562 (577)
T 2ymu_A 505 -----TGHSSSVRGVAFSPD----GQTIASASDDKTVKLWNRN-GQLLQTLTGH-----------SSSVWGVAFSPD-GQ 562 (577)
T ss_dssp -----ECCSSCEEEEEECTT----SSCEEEEETTSEEEEECTT-SCEEEEEECC-----------SSCEEEEEECTT-SS
T ss_pred -----eCCCCCEEEEEEcCC----CCEEEEEECcCEEEEEeCC-CCEEEEEcCC-----------CCCEEEEEEcCC-CC
Confidence 011335667889997 6788999999999999953 4556666666 467889999999 99
Q ss_pred EEEEecCCCeEeEEe
Q 005352 679 VIVTAGWDGRIRSFL 693 (701)
Q Consensus 679 ~ivTgg~DG~Irvw~ 693 (701)
+|+|||.||+||+|+
T Consensus 563 ~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 563 TIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEeCCCEEEEeC
Confidence 999999999999995
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.1e-39 Score=394.33 Aligned_cols=451 Identities=19% Similarity=0.275 Sum_probs=340.1
Q ss_pred cccCccee--eecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGER--VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~--~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|.+.+.+ +++++..+++++.|+.|+||+..... ....+.+|.+.|.+++|+|+|++||+|+.||.|+|||
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-------KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-------EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 34555554 45566788889999999999976532 2245778999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+++.+..+..+.....++.+.+.....+... ...+..+.+++... .+.+..+.+|...|.
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--------------g~~d~~v~vwd~~~----~~~~~~~~~h~~~v~ 747 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT--------------GSNDFFLKLWDLNQ----KECRNTMFGHTNSVN 747 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEE--------------EETTSCEEEEETTS----SSEEEEECCCSSCEE
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCCCceEEEE--------------EeCCCeEEEEECCC----cchhheecCCCCCEE
Confidence 999998888877776666666655332221111 12222233332221 245678889999999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeee----------------------------------------------
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF---------------------------------------------- 391 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~---------------------------------------------- 391 (701)
+++|+|++ +|++++.||+|++||+.+++....+
T Consensus 748 ~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~ 827 (1249)
T 3sfz_A 748 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827 (1249)
T ss_dssp EEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 99999999 9999999999999999776543322
Q ss_pred ----------cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcE
Q 005352 392 ----------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460 (701)
Q Consensus 392 ----------~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v 460 (701)
.|...|.+++|+| ++.++++++.||.|++||+.++..+ ....|...|++++|+|+++.|++++.||.|
T Consensus 828 ~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v 906 (1249)
T 3sfz_A 828 TSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTI 906 (1249)
T ss_dssp TCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeE
Confidence 3667889999999 9999999999999999999998776 455788999999999999999999999999
Q ss_pred EEEECCCCeeee----ee--e------------------EEe-----ecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 461 RFYNVSDNHLEL----DA--E------------------ICV-----HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 461 ~i~d~~~~~~~~----~~--~------------------~~~-----~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
++|++.+..... .. . ... ..........+.+++|+| ++.++++|+.+|.|
T Consensus 907 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~g~~~g~i 985 (1249)
T 3sfz_A 907 RVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP-HLEYVAFGDEDGAI 985 (1249)
T ss_dssp EEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT-TSSEEEEEETTSCC
T ss_pred EEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC-CCCEEEEEcCCCCE
Confidence 999975321000 00 0 000 000112345799999999 78999999999999
Q ss_pred EEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCc-cccccccccccccCCceEEecCCC
Q 005352 512 RILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAH-DQAKTIRSLERFTTNASIAIPWCG 590 (701)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~ 590 (701)
++||..+.........|...|.+++|+|+|++|++++.||.|++|++.+++.... .....+..+........++....+
T Consensus 986 ~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg 1065 (1249)
T 3sfz_A 986 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDG 1065 (1249)
T ss_dssp EEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSS
T ss_pred EEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCC
Confidence 9999987776666667999999999999999999999999999999998763221 112233334333334444444444
Q ss_pred C-CCCCCCCCCccc--cCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhccc
Q 005352 591 L-KCGNAEKEPQLH--VSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSC 667 (701)
Q Consensus 591 ~-~~~~~~~~~~~~--~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (701)
. ..|+........ ..+...+..++|+|+ +..+++++.|+.+++|+......+..+.+| .+.+
T Consensus 1066 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h-----------~~~v 1130 (1249)
T 3sfz_A 1066 TVKVWNVITGRIERDFTCHQGTVLSCAISSD----ATKFSSTSADKTAKIWSFDLLSPLHELKGH-----------NGCV 1130 (1249)
T ss_dssp EEEEEETTTTCCCEEEECCSSCCCCEEECSS----SSSCEEECCSSCCCEECSSSSSCSBCCCCC-----------SSCE
T ss_pred cEEEEECCCCceeEEEcccCCcEEEEEECCC----CCEEEEEcCCCcEEEEECCCcceeeeeccC-----------CCcE
Confidence 3 445444333222 224556788899997 778899999999999999988888777666 4578
Q ss_pred ccccccCCCccEEEEecCCCeEeEEee
Q 005352 668 LCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 668 ~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
.+++++++ |.+|+||+.||.|++|+.
T Consensus 1131 ~~~~~s~d-g~~lat~~~dg~i~vwd~ 1156 (1249)
T 3sfz_A 1131 RCSAFSLD-GILLATGDDNGEIRIWNV 1156 (1249)
T ss_dssp EEEEECSS-SSEEEEEETTSCCCEEES
T ss_pred EEEEECCC-CCEEEEEeCCCEEEEEEC
Confidence 88899999 999999999999999984
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-38 Score=342.29 Aligned_cols=286 Identities=19% Similarity=0.331 Sum_probs=246.8
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
..+.+|.++|++++|+|++++|++|+.||+|+|||+.+++
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~---------------------------------------- 141 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---------------------------------------- 141 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC----------------------------------------
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------------------------------------
Confidence 4678999999999999999999999999999999997763
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
....+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. |...|.+++
T Consensus 142 ----------------------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~ 199 (410)
T 1vyh_C 142 ----------------------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS 199 (410)
T ss_dssp ----------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEE
T ss_pred ----------------------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEE
Confidence 345678899999999999999 99999999999999999999988876 899999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
|+| ++++|++|+.|++|++||++++..+ .+..|...|.+++++|++.+|++|+.|+.|++||+.+......
T Consensus 200 ~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~------- 271 (410)
T 1vyh_C 200 IMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE------- 271 (410)
T ss_dssp ECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------
T ss_pred EeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE-------
Confidence 999 9999999999999999999999877 4557888999999999999999999999999999988765432
Q ss_pred ccCCCCCCeeEEEEecCC-------------------CCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCC
Q 005352 481 KKKAPCKRITGFQFLPQD-------------------SSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDG 541 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~-------------------~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg 541 (701)
...|...|.+++|+|+. +.+|++|+.|+.|++||+.+.........|...|.+++|+|+|
T Consensus 272 -~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g 350 (410)
T 1vyh_C 272 -LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350 (410)
T ss_dssp -ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred -ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCC
Confidence 23466789999999842 5689999999999999998777666666689999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccc
Q 005352 542 KHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFS 621 (701)
Q Consensus 542 ~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~ 621 (701)
++|++|+.||.|++||+.+++... .+ ..+...+..++|+|+
T Consensus 351 ~~l~s~s~D~~i~vwd~~~~~~~~--------~~----------------------------~~h~~~v~~l~~~~~--- 391 (410)
T 1vyh_C 351 KFILSCADDKTLRVWDYKNKRCMK--------TL----------------------------NAHEHFVTSLDFHKT--- 391 (410)
T ss_dssp SCEEEEETTTEEEEECCTTSCCCE--------EE----------------------------ECCSSCEEEEEECSS---
T ss_pred CEEEEEeCCCeEEEEECCCCceEE--------EE----------------------------cCCCCcEEEEEEcCC---
Confidence 999999999999999997765211 11 011234666788886
Q ss_pred cCccccccCCCCcccCCCC
Q 005352 622 LGQEYVFESFPKGCATWPE 640 (701)
Q Consensus 622 ~~~~~~~~s~d~~~~~W~~ 640 (701)
+..+++++.|+.+++|+.
T Consensus 392 -~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 -APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp -SSCEEEEETTSEEEEEC-
T ss_pred -CCEEEEEeCCCcEEEEeC
Confidence 667889999999999985
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.6e-37 Score=323.56 Aligned_cols=285 Identities=18% Similarity=0.323 Sum_probs=243.0
Q ss_pred ecccCcceeeec--CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 200 VDKQGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 200 ~~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
..|.+.+.++.+ ++..+++++.|+.|+||+...... ...+..|...|.+++|+|+|++|++|+.|+.|++|
T Consensus 52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-------VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-------EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-------ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 346667766654 456788999999999998754322 24567899999999999999999999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
++.+..... .....+.+|.+.|
T Consensus 125 ~~~~~~~~~----------------------------------------------------------~~~~~~~~h~~~v 146 (340)
T 1got_B 125 NLKTREGNV----------------------------------------------------------RVSRELAGHTGYL 146 (340)
T ss_dssp ETTTCSBSC----------------------------------------------------------EEEEEEECCSSCE
T ss_pred ECccCCCcc----------------------------------------------------------eeEEEecCCCccE
Confidence 987642100 2234567899999
Q ss_pred EEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecC
Q 005352 358 LDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDI 435 (701)
Q Consensus 358 ~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~ 435 (701)
.++.|++++.+++++.|++|++||+.+++++..+. |...|.+++|+| ++++|++|+.|+.|++||++++..+. +..|
T Consensus 147 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h 225 (340)
T 1got_B 147 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGH 225 (340)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred EEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Confidence 99999999999999999999999999999998887 899999999999 99999999999999999999988774 4568
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...|++++|+|++++|++|+.||.|++||++..+..... ....+...|++++|+| ++.+|++|+.|+.|++||
T Consensus 226 ~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~------~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY------SHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------CCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE------ccCCcccceEEEEECC-CCCEEEEECCCCeEEEEE
Confidence 889999999999999999999999999999987653221 1223345799999999 789999999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
..+.........|...|.+++|+|+|.+|++|+.|+.|+|||
T Consensus 299 ~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 987666656666999999999999999999999999999997
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.1e-38 Score=326.04 Aligned_cols=286 Identities=19% Similarity=0.323 Sum_probs=241.7
Q ss_pred eeccCCCcEEEEEEccC----CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccccee
Q 005352 245 EIQAHDGSILTMKFSPD----GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspd----g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (701)
.+++|.+.|++++|+|+ +.+|+||+.|++|+||++.....
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~------------------------------------ 70 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL------------------------------------ 70 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE------------------------------------
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe------------------------------------
Confidence 45689999999999985 67999999999999999976542
Q ss_pred eEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeE
Q 005352 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVT 398 (701)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~ 398 (701)
.....+.+|...|.+++|++++ ++++++.|++|++||+.+++++..+. +...+.
T Consensus 71 ------------------------~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~ 126 (321)
T 3ow8_A 71 ------------------------DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW 126 (321)
T ss_dssp ------------------------EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC
T ss_pred ------------------------eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE
Confidence 1234567899999999999998 99999999999999999999988886 778899
Q ss_pred EEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
+++|+| ++++|++++.||.|++||+.+++.. ....+...+.+++|+|++++|++|+.||.|++||+++++....
T Consensus 127 ~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~---- 201 (321)
T 3ow8_A 127 TLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT---- 201 (321)
T ss_dssp CEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE----
T ss_pred EEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE----
Confidence 999999 9999999999999999999988766 4456678899999999999999999999999999998865432
Q ss_pred eecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 478 ~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
...+...|.+++|+| ++.+|++++.|+.|++||+...........|...|.+++|+|++++|++++.|+.|++||
T Consensus 202 ----~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd 276 (321)
T 3ow8_A 202 ----LEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276 (321)
T ss_dssp ----ECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ----EcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 234667899999999 789999999999999999987766666666899999999999999999999999999999
Q ss_pred CCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccC
Q 005352 558 CIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCAT 637 (701)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~ 637 (701)
+.+++. +..+ ......+..++|+|+ +..+++++.|+.+++
T Consensus 277 ~~~~~~--------~~~~----------------------------~~h~~~v~~v~~s~~----g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 277 VGTRTC--------VHTF----------------------------FDHQDQVWGVKYNGN----GSKIVSVGDDQEIHI 316 (321)
T ss_dssp TTTTEE--------EEEE----------------------------CCCSSCEEEEEECTT----SSEEEEEETTCCEEE
T ss_pred CCCCEE--------EEEE----------------------------cCCCCcEEEEEECCC----CCEEEEEeCCCeEEE
Confidence 987651 1111 011234566788886 678899999999999
Q ss_pred CCC
Q 005352 638 WPE 640 (701)
Q Consensus 638 W~~ 640 (701)
|+.
T Consensus 317 wd~ 319 (321)
T 3ow8_A 317 YDC 319 (321)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=324.57 Aligned_cols=281 Identities=18% Similarity=0.318 Sum_probs=243.4
Q ss_pred cccCcceeeecC------ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcE
Q 005352 201 DKQGEGERVRLN------EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274 (701)
Q Consensus 201 ~~~~~~~~~~~~------~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (701)
.|.+.+.++.+. +..+++|+.|++|+||++...... ....+.+|...|.+++|++++.+|++|+.|++|
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-----~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-----LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-----EEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-----eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 467778777764 346889999999999998643222 123578899999999999999999999999999
Q ss_pred EEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc
Q 005352 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (701)
Q Consensus 275 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 354 (701)
++||+.+++.+ ..+..|.
T Consensus 105 ~lWd~~~~~~~--------------------------------------------------------------~~~~~~~ 122 (321)
T 3ow8_A 105 RLWDLENGKQI--------------------------------------------------------------KSIDAGP 122 (321)
T ss_dssp EEEETTTTEEE--------------------------------------------------------------EEEECCT
T ss_pred EEEECCCCCEE--------------------------------------------------------------EEEeCCC
Confidence 99999887532 3445677
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
..+.+++|+|++ +|++++.|+.|++|++.+++....+. +...|.+++|+| ++++|++|+.||.|++||+++++.+..
T Consensus 123 ~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~ 201 (321)
T 3ow8_A 123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHT 201 (321)
T ss_dssp TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 788999999999 99999999999999999998887776 778899999999 999999999999999999999987754
Q ss_pred -ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 433 -VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 433 -~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
..|..+|++++|+|++++|++|+.|+.|++||+++...... ...|...|.+++|+| ++.+|++++.|+.|
T Consensus 202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~--------~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v 272 (321)
T 3ow8_A 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT--------LSGHASWVLNVAFCP-DDTHFVSSSSDKSV 272 (321)
T ss_dssp ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE--------ECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE--------EcCCCCceEEEEECC-CCCEEEEEeCCCcE
Confidence 45788999999999999999999999999999988764321 345668899999999 78999999999999
Q ss_pred EEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 512 RILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
++||+.+.........|...|.+++|+|++++|++++.||.|+|||+
T Consensus 273 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 273 KVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999887776666678999999999999999999999999999996
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1e-36 Score=346.63 Aligned_cols=420 Identities=15% Similarity=0.132 Sum_probs=301.1
Q ss_pred ccCccee--eecCccccccccccceEEEEEccCccchhhhcccCceeccCCCc-EEEEEEcc--CCCEEEEEeCCCcEEE
Q 005352 202 KQGEGER--VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGS-ILTMKFSP--DGQYLASAGDDGVVRL 276 (701)
Q Consensus 202 ~~~~~~~--~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fsp--dg~~Lasgs~Dg~I~i 276 (701)
+.+.+.+ ++++++.+++++ ++.|+||+....... ....+.+.+|.+. |++++|+| ++++||+|+.||.|+|
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~---~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSK---VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCS---SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCc---cccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 3444544 455556667666 889999998643111 0223567889999 99999999 9999999999999999
Q ss_pred EEeecC--------eeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec-CCccEEEcCCccccccCCCe
Q 005352 277 WQVVED--------ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT-SESACVVFPPKVFRILEKPL 347 (701)
Q Consensus 277 Wd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 347 (701)
||+.++ +.+..+..+.....++. +.+.+..++...... ....+..++ ..+.+
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~s~~~~~l~~~~~~~~~~~~v~~~d------~~~~~ 153 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDIS-------------WDFEGRRLCVVGEGRDNFGVFISWD------SGNSL 153 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEE-------------ECTTSSEEEEEECCSSCSEEEEETT------TCCEE
T ss_pred EeCCCCcccccccccccchhhcccccEEEEE-------------EeCCCCEEEEeccCCCCccEEEEEE------CCCcc
Confidence 999754 44444444443333333 333333322221111 112333333 23567
Q ss_pred EEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCC---CeEEEEEeeCC-CCEEEEEEcCCcEE
Q 005352 348 HEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSN---YVTCVHFNPVD-DNYFISGSIDGKVR 420 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~---~V~~l~f~p~~-~~~l~sgs~dg~v~ 420 (701)
..+.+|...|.+++|+|++ .|++++.|+.|++||+.+++++..+. |.. .|++++|+| + +++|++++.||.|+
T Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKIS 232 (615)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEE
T ss_pred eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEE
Confidence 8889999999999999998 79999999999999999999998887 777 899999999 7 99999999999999
Q ss_pred EEeCCCCcEEEEe-----cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE------------------
Q 005352 421 IWAVLSCHVVDWV-----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC------------------ 477 (701)
Q Consensus 421 iwd~~~~~~~~~~-----~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~------------------ 477 (701)
+||+.+++.+..+ .|...|.+++|+ ++++|++++.||.|++||+++++........
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTE
T ss_pred EEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCe
Confidence 9999999988766 788999999999 9999999999999999999877643322110
Q ss_pred -------------------eecccC---------------------------------CCCCCeeEEEEecC--------
Q 005352 478 -------------------VHSKKK---------------------------------APCKRITGFQFLPQ-------- 497 (701)
Q Consensus 478 -------------------~~~~~~---------------------------------~~~~~i~~l~~~p~-------- 497 (701)
...... .+...|.+++|.+.
T Consensus 312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 391 (615)
T 1pgu_A 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW 391 (615)
T ss_dssp EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEET
T ss_pred EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeC
Confidence 000011 12233334443110
Q ss_pred -------------------------C--------------------------------------CCEEEEEEC-CCcEEE
Q 005352 498 -------------------------D--------------------------------------SSKVMVSCA-DSQVRI 513 (701)
Q Consensus 498 -------------------------~--------------------------------------~~~l~~~s~-dg~I~i 513 (701)
+ +.++++++. |+.|++
T Consensus 392 d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~ 471 (615)
T 1pgu_A 392 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQV 471 (615)
T ss_dssp TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEE
T ss_pred CCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEE
Confidence 0 344555555 666666
Q ss_pred EeCCcccee-eecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCC
Q 005352 514 LQGPNVIGK-YKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLK 592 (701)
Q Consensus 514 wd~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 592 (701)
||+...... .....|...|++++|+|++++|++++.||.|++|++.+++.. ..+..
T Consensus 472 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~--------------- 528 (615)
T 1pgu_A 472 FKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK--------TSRWA--------------- 528 (615)
T ss_dssp EETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--------ECCSC---------------
T ss_pred EECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce--------eEeec---------------
Confidence 666543332 333457889999999999999999999999999999877621 11100
Q ss_pred CCCCCCCCccccCCCCCCCccccCCCc------cccCccccccCCCCcccCCCCccC-CCCccccccccchhhhhhhhhc
Q 005352 593 CGNAEKEPQLHVSDDDSPENLAFAPAR------FSLGQEYVFESFPKGCATWPEEKL-PALSQLSSASALHKSQYKFLKS 665 (701)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~l~~sp~~------~~~~~~~~~~s~d~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 665 (701)
.+...+..++|+|.. ...+..+++++.|+.+++|+.+.. ..+..+.+| ..
T Consensus 529 ------------~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-----------~~ 585 (615)
T 1pgu_A 529 ------------FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH-----------KD 585 (615)
T ss_dssp ------------CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS-----------TT
T ss_pred ------------CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC-----------cc
Confidence 013345667777710 002678899999999999999887 556666555 46
Q ss_pred ccccccccCCCccEEEEecCCCeEeEEee
Q 005352 666 SCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 666 ~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
.+.+++++++ +. |+||+.||.|++|+.
T Consensus 586 ~v~~l~~s~~-~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 586 GVNNLLWETP-ST-LVSSGADACIKRWNV 612 (615)
T ss_dssp CEEEEEEEET-TE-EEEEETTSCEEEEEE
T ss_pred ceEEEEEcCC-CC-eEEecCCceEEEEee
Confidence 7888999999 88 999999999999984
No 10
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.9e-38 Score=337.45 Aligned_cols=283 Identities=22% Similarity=0.358 Sum_probs=244.2
Q ss_pred eeecccCcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEE
Q 005352 198 CVVDKQGEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR 275 (701)
Q Consensus 198 ~~~~~~~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 275 (701)
.+..|...+.++.++ +..+++++.|+.|+||++.... ..+.+++|.+.|++++|+|++++|++|+.|++|+
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 445677777776655 4578889999999999976432 2346788999999999999999999999999999
Q ss_pred EEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCcc
Q 005352 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (701)
Q Consensus 276 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 355 (701)
|||+.+.+ .+..+.+|..
T Consensus 176 iwd~~~~~--------------------------------------------------------------~~~~~~~h~~ 193 (410)
T 1vyh_C 176 LWDFQGFE--------------------------------------------------------------CIRTMHGHDH 193 (410)
T ss_dssp EEETTSSC--------------------------------------------------------------EEECCCCCSS
T ss_pred EEeCCCCc--------------------------------------------------------------eeEEEcCCCC
Confidence 99987653 2344568999
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EE
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DW 432 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~ 432 (701)
.|.+++|+|++ +|++++.|++|++||+.++.++..+. |...|.+++|+| ++.+|++|+.|+.|++||+.+++.. .+
T Consensus 194 ~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~ 272 (410)
T 1vyh_C 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAEL 272 (410)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEe
Confidence 99999999999 99999999999999999999998886 889999999999 9999999999999999999998876 45
Q ss_pred ecCCCcEEEEEEeeC--------------------CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEE
Q 005352 433 VDIRQIVTAVCYRPD--------------------GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~--------------------g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l 492 (701)
..|...|.+++|+|+ +.+|++|+.|+.|++||++++..... ...|...|.++
T Consensus 273 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~--------~~~h~~~v~~v 344 (410)
T 1vyh_C 273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT--------LVGHDNWVRGV 344 (410)
T ss_dssp CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE--------EECCSSCEEEE
T ss_pred cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE--------EECCCCcEEEE
Confidence 578899999999996 67899999999999999998865432 23466789999
Q ss_pred EEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 493 QFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
+|+| ++.+|++++.|+.|++||..+.........|...|++++|+|++.+|++|+.||.|++|+++
T Consensus 345 ~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 345 LFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999 78999999999999999998766555555688999999999999999999999999999863
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.6e-38 Score=332.21 Aligned_cols=269 Identities=16% Similarity=0.164 Sum_probs=202.0
Q ss_pred cccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC------CCcEEEEEeecCeeeeeecCC
Q 005352 218 FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD------DGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 218 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~------Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
.+..+.....|++.. ....+|++.|++|+|+|||++||+|+. |+.|++|+..++....
T Consensus 21 ~~~g~~~~~~w~~p~-----------~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~----- 84 (357)
T 4g56_B 21 QSNGSSKGSAWGRPV-----------TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE----- 84 (357)
T ss_dssp ------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG-----
T ss_pred ecCCCccccccCCCC-----------CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce-----
Confidence 345566778886432 123469999999999999999999998 6677777766543211
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSA 371 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~ 371 (701)
.......+|...|.+++|+|++.++++
T Consensus 85 -----------------------------------------------------~~~~~~~~~~~~V~~~~~s~d~~~l~~ 111 (357)
T 4g56_B 85 -----------------------------------------------------SLCTAGVQTEAGVTDVAWVSEKGILVA 111 (357)
T ss_dssp -----------------------------------------------------GGCSEEEECSSCEEEEEEETTTEEEEE
T ss_pred -----------------------------------------------------eEecccCCCCCCEEEEEEcCCCCEEEE
Confidence 122334568899999999999988889
Q ss_pred ECCCcEEEEECCCCeeeeee-----cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEe
Q 005352 372 SIDKTVRLWRVGNDHCLRVF-----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYR 445 (701)
Q Consensus 372 s~dg~I~iWd~~~~~~~~~~-----~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~s 445 (701)
+.||+|+|||+.+++..... .|...|++++|+| ++++|++|+.|+.|++||+.+++.+. +..|...|++++|+
T Consensus 112 s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s 190 (357)
T 4g56_B 112 SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC 190 (357)
T ss_dssp ETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 99999999999988755332 4889999999999 99999999999999999999998775 45688999999999
Q ss_pred eCCC-eEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeee
Q 005352 446 PDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK 524 (701)
Q Consensus 446 p~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~ 524 (701)
|++. .+++++.||.|++||+++++..... ....+...+++++|+|+++.+|++|+.|+.|++||+++......
T Consensus 191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~ 264 (357)
T 4g56_B 191 PGKDTIFLSCGEDGRILLWDTRKPKPATRI------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT 264 (357)
T ss_dssp TTCSSCEEEEETTSCEEECCTTSSSCBCBC------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE
T ss_pred cCCCceeeeeccCCceEEEECCCCceeeee------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE
Confidence 9875 7889999999999999887643221 12345567999999997788999999999999999987776666
Q ss_pred cccCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCC
Q 005352 525 GLRRSGNQLSACFTSDG-KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 525 ~~~~~~~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
...|...|++++|+|++ ++|++|+.|++|+|||+++++
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 66688999999999987 689999999999999987654
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.5e-37 Score=351.93 Aligned_cols=407 Identities=14% Similarity=0.174 Sum_probs=287.0
Q ss_pred cccCcce--eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC----CcE
Q 005352 201 DKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD----GVV 274 (701)
Q Consensus 201 ~~~~~~~--~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~I 274 (701)
.|...+. ++++++..+++++.|++|+||+....... ....+.+|.++|.+++|+|+|++||+++.+ +.|
T Consensus 57 ~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-----~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v 131 (611)
T 1nr0_A 57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-----LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV 131 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-----EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce-----eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence 4555554 45566778999999999999997532211 123577899999999999999999999875 467
Q ss_pred EEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc
Q 005352 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (701)
Q Consensus 275 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 354 (701)
++|| .++....+..+...+.++.|.++. ...+ .....+..+.+++... .+.+..+.+|.
T Consensus 132 ~~wd--~~~~~~~l~gh~~~v~~v~f~p~~-------------~~~l--~s~s~D~~v~lwd~~~----~~~~~~l~~H~ 190 (611)
T 1nr0_A 132 FLFD--TGTSNGNLTGQARAMNSVDFKPSR-------------PFRI--ISGSDDNTVAIFEGPP----FKFKSTFGEHT 190 (611)
T ss_dssp EETT--TCCBCBCCCCCSSCEEEEEECSSS-------------SCEE--EEEETTSCEEEEETTT----BEEEEEECCCS
T ss_pred EEee--CCCCcceecCCCCCceEEEECCCC-------------CeEE--EEEeCCCeEEEEECCC----CeEeeeecccc
Confidence 7777 444555555555444444444432 1111 1122233333333221 14467889999
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee--------cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF--------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~--------~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~ 425 (701)
..|.+++|+|++ +|++++.|++|++||+.+++++..+ .|.+.|.+++|+| ++++|++++.|++|++||+.
T Consensus 191 ~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 191 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence 999999999999 9999999999999999999988877 5899999999999 99999999999999999998
Q ss_pred CCcEEE--------------------------------------------EecCCCcEEEEEEeeCCCeEEEEecCCcEE
Q 005352 426 SCHVVD--------------------------------------------WVDIRQIVTAVCYRPDGQGGIVGSMMGDCR 461 (701)
Q Consensus 426 ~~~~~~--------------------------------------------~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~ 461 (701)
+++.+. ...|...|++++|+|+|++|++++.|+.|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~ 349 (611)
T 1nr0_A 270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349 (611)
T ss_dssp TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Confidence 876442 125778899999999999999999999999
Q ss_pred EEECCCCeeeeeee--------------------------EEeec-----------------------------------
Q 005352 462 FYNVSDNHLELDAE--------------------------ICVHS----------------------------------- 480 (701)
Q Consensus 462 i~d~~~~~~~~~~~--------------------------~~~~~----------------------------------- 480 (701)
+||+.++....... +.+..
T Consensus 350 ~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~ 429 (611)
T 1nr0_A 350 SWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 429 (611)
T ss_dssp EEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE
T ss_pred EEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEE
Confidence 99998764322100 00000
Q ss_pred -------------ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce-eeecccCCCCeEEEEEecCCCEEEE
Q 005352 481 -------------KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG-KYKGLRRSGNQLSACFTSDGKHIVS 546 (701)
Q Consensus 481 -------------~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~~s~dg~~l~s 546 (701)
....+...+.+++|+| ++++|++++.|+.|++||+..... ......|...|++++|+|+|++|++
T Consensus 430 ~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las 508 (611)
T 1nr0_A 430 CYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA 508 (611)
T ss_dssp ESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred eCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEE
Confidence 0001234578899999 789999999999999999865321 1222458899999999999999999
Q ss_pred EeCCCcEEEEeCCC-CCCCCc---c-ccccccccccccCCceEE-ecCCCC-CCCCCCCCCc-c-ccC--C-CCCCCccc
Q 005352 547 AGEDSNVYMWNCIG-HEEPAH---D-QAKTIRSLERFTTNASIA-IPWCGL-KCGNAEKEPQ-L-HVS--D-DDSPENLA 614 (701)
Q Consensus 547 gs~Dg~I~iWd~~~-~~~~~~---~-~~~~~~~~~~~~~~~~~a-~~~~~~-~~~~~~~~~~-~-~~~--~-~~~~~~l~ 614 (701)
++.|+.|++|++.+ ++.... . ....+..+...+.+..++ ....+. ..|+...... . ..+ + ...+..++
T Consensus 509 ~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~ 588 (611)
T 1nr0_A 509 TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI 588 (611)
T ss_dssp EETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE
T ss_pred EcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEE
Confidence 99999999999987 322111 0 222333444444432222 223332 4565543221 1 122 2 34577888
Q ss_pred cCCCccccCccccccCCCCcccCCCC
Q 005352 615 FAPARFSLGQEYVFESFPKGCATWPE 640 (701)
Q Consensus 615 ~sp~~~~~~~~~~~~s~d~~~~~W~~ 640 (701)
|+|+ +. +++++.|+.+++|+.
T Consensus 589 fs~d----~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 589 WLNE----TT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEET----TE-EEEEETTSCEEEEEC
T ss_pred EcCC----CE-EEEecCCCCEEEEec
Confidence 9997 45 899999999999985
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=327.63 Aligned_cols=256 Identities=18% Similarity=0.187 Sum_probs=204.3
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
.|...|.+++|+|||++|++++ |+++++||............+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~------------------------------------ 70 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAP------------------------------------ 70 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTT------------------------------------
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccC------------------------------------
Confidence 4788899999999999999888 788999985321100000000
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeee-----cCCCCeEEEEE
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF-----PHSNYVTCVHF 402 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~-----~h~~~V~~l~f 402 (701)
..........|...|.+++|+|++.|++|+.||+|+|||+.+++++..+ .|...|++++|
T Consensus 71 ---------------~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~ 135 (344)
T 4gqb_B 71 ---------------NEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSV 135 (344)
T ss_dssp ---------------CGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEE
T ss_pred ---------------CcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEE
Confidence 0011122234677899999999999999999999999999998765543 38999999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCC-eEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
+| ++++|++|+.|++|++||+.+++.+. +..|...|++++|+|++. .|++++.|+.|++||+++++......
T Consensus 136 sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~----- 209 (344)
T 4gqb_B 136 LS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG----- 209 (344)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----
T ss_pred CC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeee-----
Confidence 99 99999999999999999999998875 456899999999999885 67899999999999999876543221
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDG-KHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~ 559 (701)
...+...+++++|+|+++.+|++|+.|+.|++||+++.........|...|++++|+|++ ++|++|+.|++|+|||+.
T Consensus 210 -~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 210 -CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp -----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred -cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence 223446789999999888899999999999999998776666666699999999999998 689999999999999976
Q ss_pred CCC
Q 005352 560 GHE 562 (701)
Q Consensus 560 ~~~ 562 (701)
+++
T Consensus 289 ~~~ 291 (344)
T 4gqb_B 289 LSE 291 (344)
T ss_dssp CCE
T ss_pred CCc
Confidence 553
No 14
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3e-37 Score=319.56 Aligned_cols=249 Identities=15% Similarity=0.284 Sum_probs=218.3
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+|.+.|++|+|+|++++||+|+.||+|++||+.++..
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~--------------------------------------- 47 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE--------------------------------------- 47 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------------------------
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce---------------------------------------
Confidence 46888999999999999999999999999999999987642
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
+..+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. |...|++++
T Consensus 48 -----------------------~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 104 (304)
T 2ynn_A 48 -----------------------VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA 104 (304)
T ss_dssp -----------------------EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred -----------------------eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEE
Confidence 34556788999999999999 99999999999999999999988886 999999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEE--EEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEe
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~ 478 (701)
|+| ++++|++|+.|++|++||++++... ....|...|++++|+| ++..|++|+.|+.|++||++........
T Consensus 105 ~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~---- 179 (304)
T 2ynn_A 105 VHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---- 179 (304)
T ss_dssp ECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE----
T ss_pred EcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee----
Confidence 999 9999999999999999999887433 4557889999999999 6789999999999999999876543211
Q ss_pred ecccCCCCCCeeEEEEecC-CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 479 HSKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~-~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
...+...+..+.|+|. ++.+|++++.|+.|++||+.+.........|...|.+++|+|++++|++|+.||.|++||
T Consensus 180 ---~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 180 ---TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp ---ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred ---ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 2234467888999873 567999999999999999998776666667999999999999999999999999999999
Q ss_pred CCCCC
Q 005352 558 CIGHE 562 (701)
Q Consensus 558 ~~~~~ 562 (701)
+.+++
T Consensus 257 ~~~~~ 261 (304)
T 2ynn_A 257 SSTYK 261 (304)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 98776
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.8e-36 Score=319.02 Aligned_cols=283 Identities=16% Similarity=0.316 Sum_probs=234.8
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+++|.+.|++++|+|++++|++|+.||+|+|||+.+++
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~---------------------------------------- 88 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN---------------------------------------- 88 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC----------------------------------------
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC----------------------------------------
Confidence 4688999999999999999999999999999999987764
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe----eeeee-cCCCCe
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH----CLRVF-PHSNYV 397 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~----~~~~~-~h~~~V 397 (701)
.+..+..|...|.+++|+|++ +|++++.|+.|++|++.+.. ....+ .|...|
T Consensus 89 ----------------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v 146 (340)
T 1got_B 89 ----------------------KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146 (340)
T ss_dssp ----------------------EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCE
T ss_pred ----------------------cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccE
Confidence 234556788999999999999 99999999999999998763 33333 389999
Q ss_pred EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeE
Q 005352 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~ 476 (701)
.++.|++ ++ .+++++.|+.|++||+.+++.+. +..|...|++++|+|+++++++|+.||.|++||++++.....
T Consensus 147 ~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~--- 221 (340)
T 1got_B 147 SCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT--- 221 (340)
T ss_dssp EEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE---
T ss_pred EEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE---
Confidence 9999998 54 58999999999999999998774 446889999999999999999999999999999998764322
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec--ccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG--LRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~--~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
...|...|++++|+| ++.+|++++.|+.|++||++........ ..+...|.+++|+|+|++|++|+.||.|+
T Consensus 222 -----~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~ 295 (340)
T 1got_B 222 -----FTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295 (340)
T ss_dssp -----ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred -----EcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEE
Confidence 234667899999999 7899999999999999999865443322 22445799999999999999999999999
Q ss_pred EEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCc
Q 005352 555 MWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKG 634 (701)
Q Consensus 555 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~ 634 (701)
+||+.+++.. ..+ ..+...+..++|+|+ +..+++++.|+.
T Consensus 296 vwd~~~~~~~--------~~~----------------------------~~h~~~v~~~~~s~d----g~~l~s~s~D~~ 335 (340)
T 1got_B 296 VWDALKADRA--------GVL----------------------------AGHDNRVSCLGVTDD----GMAVATGSWDSF 335 (340)
T ss_dssp EEETTTCCEE--------EEE----------------------------ECCSSCEEEEEECTT----SSCEEEEETTSC
T ss_pred EEEcccCcEe--------eEe----------------------------ecCCCcEEEEEEcCC----CCEEEEEcCCcc
Confidence 9998776511 000 011334667788887 678899999999
Q ss_pred ccCCC
Q 005352 635 CATWP 639 (701)
Q Consensus 635 ~~~W~ 639 (701)
+++|+
T Consensus 336 i~iWd 340 (340)
T 1got_B 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.8e-36 Score=313.59 Aligned_cols=249 Identities=21% Similarity=0.336 Sum_probs=214.8
Q ss_pred ceeccCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSILTMKFSPDG-QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
..+.+|.+.|++++|+|++ ++|+||+.|++|++|++......
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~------------------------------------- 53 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK------------------------------------- 53 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE-------------------------------------
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc-------------------------------------
Confidence 4688999999999999965 89999999999999998653210
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l 400 (701)
...++..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|.++
T Consensus 54 --------------------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~ 113 (319)
T 3frx_A 54 --------------------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV 113 (319)
T ss_dssp --------------------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred --------------------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEE
Confidence 003456788999999999999999 99999999999999999999988876 99999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeC------CCeEEEEecCCcEEEEECCCCeeeeee
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD------GQGGIVGSMMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~------g~~l~~gs~dg~v~i~d~~~~~~~~~~ 474 (701)
+|+| ++.+|++|+.|++|++||++.........|...|.++++.|. +..+++++.|+.|++||+++.+....
T Consensus 114 ~~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~- 191 (319)
T 3frx_A 114 DIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD- 191 (319)
T ss_dssp EECT-TSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE-
T ss_pred EEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee-
Confidence 9999 999999999999999999987777778889999999999985 44899999999999999988764321
Q ss_pred eEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 475 EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 475 ~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
...|...|.+++|+| ++.+|++++.|+.|++||+.......... +...|.+++|+|++.+|++++.+ .++
T Consensus 192 -------~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~-~i~ 261 (319)
T 3frx_A 192 -------FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAATAT-GIK 261 (319)
T ss_dssp -------ECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEE-CCSCEEEEEECSSSSEEEEEETT-EEE
T ss_pred -------ecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcCCCCEEEEEcCC-CcE
Confidence 235678899999999 78999999999999999998766554443 45789999999999999998865 599
Q ss_pred EEeCCCC
Q 005352 555 MWNCIGH 561 (701)
Q Consensus 555 iWd~~~~ 561 (701)
+|+++..
T Consensus 262 v~~~~~~ 268 (319)
T 3frx_A 262 VFSLDPQ 268 (319)
T ss_dssp EEEETTE
T ss_pred EEEeCcC
Confidence 9998654
No 17
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.5e-36 Score=315.65 Aligned_cols=252 Identities=20% Similarity=0.317 Sum_probs=207.5
Q ss_pred ceeccCCCcEEEEEE-----cc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccc
Q 005352 244 QEIQAHDGSILTMKF-----SP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEK 317 (701)
Q Consensus 244 ~~l~~H~~~I~~l~f-----sp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (701)
+.+++|.+.|++++| ++ ++++||||+.|++|+|||+.+.+....
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~------------------------------ 64 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY------------------------------ 64 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB------------------------------
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc------------------------------
Confidence 468899999999999 77 899999999999999999876431100
Q ss_pred ceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCC
Q 005352 318 ISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSN 395 (701)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~ 395 (701)
...+...+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |..
T Consensus 65 -------------------------~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~ 119 (343)
T 2xzm_R 65 -------------------------FGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS 119 (343)
T ss_dssp -------------------------SEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCS
T ss_pred -------------------------cccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC
Confidence 003456678999999999999999 99999999999999999999988876 999
Q ss_pred CeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe---cCCCcEEEEEEeeCC----------CeEEEEecCCcEEE
Q 005352 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDG----------QGGIVGSMMGDCRF 462 (701)
Q Consensus 396 ~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~---~~~~~i~~i~~sp~g----------~~l~~gs~dg~v~i 462 (701)
.|.+++|+| ++++|++++.|+.|++||+......... .|...|.+++|+|++ .+|++++.||.|++
T Consensus 120 ~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 198 (343)
T 2xzm_R 120 EVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKV 198 (343)
T ss_dssp CEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEE
T ss_pred cEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEE
Confidence 999999999 9999999999999999999855444333 577889999999987 78999999999999
Q ss_pred EECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCC
Q 005352 463 YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK 542 (701)
Q Consensus 463 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~ 542 (701)
||... .... ....|...|.+++|+| ++.+|++++.|+.|++||+...........+...|.+++|+|++.
T Consensus 199 wd~~~-~~~~--------~~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~ 268 (343)
T 2xzm_R 199 WNTNF-QIRY--------TFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQ 268 (343)
T ss_dssp EETTT-EEEE--------EEECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSC
T ss_pred EcCCC-ceeE--------EEcCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCC
Confidence 99543 2211 1234667899999999 789999999999999999854333222233556799999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCC
Q 005352 543 HIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 543 ~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+|+++ .|+.|++|++.+++
T Consensus 269 ~la~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 269 WVAVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp EEEEE-ESSCEEEEESSSCC
T ss_pred EEEEE-CCCCEEEEEeCCCC
Confidence 87755 57889999987765
No 18
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=318.63 Aligned_cols=293 Identities=15% Similarity=0.214 Sum_probs=224.1
Q ss_pred cCcceeeecCcc-ccccccccceEEEEEccCcc----chhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 203 QGEGERVRLNEE-DAMFCSKVQRVKVYHCKKRS----KELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 203 ~~~~~~~~~~~~-~~~~~~~d~~v~vw~~~~~~----~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
+..+.+++++++ .+++++.++++++|+..... ..............|...|.+++|+|++ +|++|+.||+|+||
T Consensus 30 ~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lW 108 (344)
T 4gqb_B 30 ERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELW 108 (344)
T ss_dssp CSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred cCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEE
Confidence 344555555443 33444557777777632110 0001111112234577889999999985 78899999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
|+.+++.+.. ....+.+|.+.|
T Consensus 109 d~~~~~~~~~----------------------------------------------------------~~~~~~~H~~~V 130 (344)
T 4gqb_B 109 ELDENETLIV----------------------------------------------------------SKFCKYEHDDIV 130 (344)
T ss_dssp EECTTSSCEE----------------------------------------------------------EEEEEECCSSCE
T ss_pred eccCCCceeE----------------------------------------------------------eeccccCCCCCE
Confidence 9988753221 123456899999
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe--
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-- 433 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-- 433 (701)
++++|+|++ +|++|+.|++|++||+.+++++..+. |...|++++|+|....+|++++.|++|++||+++++....+
T Consensus 131 ~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 210 (344)
T 4gqb_B 131 STVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC 210 (344)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec
Confidence 999999999 99999999999999999999999887 99999999999944468999999999999999998876543
Q ss_pred -cCCCcEEEEEEeeC-CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 434 -DIRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 434 -~~~~~i~~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
.+...+++++|+|+ +++|++|+.||.|++||+++++.... ...|...|++++|+|++..+|++++.|++|
T Consensus 211 ~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~--------~~~h~~~v~~v~fsp~g~~~lasgs~D~~i 282 (344)
T 4gqb_B 211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS--------SAVHSQCVTGLVFSPHSVPFLASLSEDCSL 282 (344)
T ss_dssp ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE--------EECCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE--------EcCCCCCEEEEEEccCCCeEEEEEeCCCeE
Confidence 34567999999995 56788999999999999998765432 234668899999999656789999999999
Q ss_pred EEEeCCccceeeecccCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCCC
Q 005352 512 RILQGPNVIGKYKGLRRSGNQLSACFTSDGK-HIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+|||..... .+....|...|++++|+|+++ +|++++.|++|++|++.+...
T Consensus 283 ~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 283 AVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 999997654 344556999999999999986 577999999999999987653
No 19
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.5e-36 Score=313.86 Aligned_cols=288 Identities=17% Similarity=0.308 Sum_probs=234.1
Q ss_pred eecccCcceeeecCc---cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEE
Q 005352 199 VVDKQGEGERVRLNE---EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR 275 (701)
Q Consensus 199 ~~~~~~~~~~~~~~~---~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 275 (701)
+..|.+.+.++.+.+ ..+++++.|++|++|++....... ......+++|...|.+++|+|+|++|++|+.|++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF--GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE--EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc--cccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 346778888877653 467889999999999985432211 122346889999999999999999999999999999
Q ss_pred EEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCcc
Q 005352 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (701)
Q Consensus 276 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 355 (701)
|||+.+++. +..+.+|..
T Consensus 91 ~wd~~~~~~--------------------------------------------------------------~~~~~~h~~ 108 (319)
T 3frx_A 91 LWDVATGET--------------------------------------------------------------YQRFVGHKS 108 (319)
T ss_dssp EEETTTTEE--------------------------------------------------------------EEEEECCSS
T ss_pred EEECCCCCe--------------------------------------------------------------eEEEccCCC
Confidence 999987742 345678999
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeC-----CCCEEEEEEcCCcEEEEeCCCCcE
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV-----DDNYFISGSIDGKVRIWAVLSCHV 429 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~-----~~~~l~sgs~dg~v~iwd~~~~~~ 429 (701)
.|.+++|+|++ +|++++.|++|++||++.........|...|.+++|.|. ++.+|++++.|+.|++||+++.+.
T Consensus 109 ~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 188 (319)
T 3frx_A 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188 (319)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh
Confidence 99999999998 999999999999999976554444559999999999982 234899999999999999998876
Q ss_pred E-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 430 V-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 430 ~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
. .+..|...|++++|+|++++|++|+.||.|++||+.+.+...... ....|.+++|+| ++.++++++.
T Consensus 189 ~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~v~~~~~sp-~~~~la~~~~- 257 (319)
T 3frx_A 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS---------AQDEVFSLAFSP-NRYWLAAATA- 257 (319)
T ss_dssp EEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE---------CCSCEEEEEECS-SSSEEEEEET-
T ss_pred heeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------CCCcEEEEEEcC-CCCEEEEEcC-
Confidence 6 456789999999999999999999999999999999887643221 235799999999 6777777765
Q ss_pred CcEEEEeCCccceeeec--------ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 509 SQVRILQGPNVIGKYKG--------LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~--------~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
+.+++|++......... ..+...+.+++|+|+|++|++|+.||.|+||++.+.
T Consensus 258 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 258 TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 45999998753322211 124667999999999999999999999999998764
No 20
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.4e-36 Score=318.40 Aligned_cols=290 Identities=16% Similarity=0.255 Sum_probs=229.5
Q ss_pred eecccCcceeeec--------CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC
Q 005352 199 VVDKQGEGERVRL--------NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD 270 (701)
Q Consensus 199 ~~~~~~~~~~~~~--------~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 270 (701)
+..|.+.+.++.+ ++..+++|+.|++|+||++...............+.+|...|.+++|+|++.+|++|+.
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~ 96 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence 3457777777754 45678899999999999986543211111223467899999999999999999999999
Q ss_pred CCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEE
Q 005352 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (701)
Q Consensus 271 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (701)
|++|++||+.+++ .+..+
T Consensus 97 D~~v~lwd~~~~~--------------------------------------------------------------~~~~~ 114 (343)
T 2xzm_R 97 DKTLRLWDLRTGT--------------------------------------------------------------TYKRF 114 (343)
T ss_dssp TSEEEEEETTSSC--------------------------------------------------------------EEEEE
T ss_pred CCcEEEEECCCCc--------------------------------------------------------------EEEEE
Confidence 9999999998764 34556
Q ss_pred cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee---cCCCCeEEEEEeeCCC----------CEEEEEEcC
Q 005352 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF---PHSNYVTCVHFNPVDD----------NYFISGSID 416 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~~~----------~~l~sgs~d 416 (701)
.+|...|.+++|+|++ +|++++.|++|++||+......... .|...|.+++|+| ++ .+|++++.|
T Consensus 115 ~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d 193 (343)
T 2xzm_R 115 VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWD 193 (343)
T ss_dssp ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETT
T ss_pred cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCC
Confidence 7899999999999999 9999999999999999854443333 4888999999999 65 799999999
Q ss_pred CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 417 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
+.|++||...........|...|++++|+|+|++|++|+.||.|++||+........ .. .+...|.+++|+|
T Consensus 194 ~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~---~~-----~~~~~v~~v~~sp 265 (343)
T 2xzm_R 194 GRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR---EF-----DAGSTINQIAFNP 265 (343)
T ss_dssp SEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE---EE-----ECSSCEEEEEECS
T ss_pred CEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce---ee-----cCCCcEEEEEECC
Confidence 999999965544446678899999999999999999999999999999954322111 00 1234699999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCccce----eeec---------ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVIG----KYKG---------LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~~----~~~~---------~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
++.+++ ++.|+.|++||+.+... .+.. ..|...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 266 -~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 266 -KLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp -SSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred -CCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 566655 55688899999864332 1111 146778999999999999999999999999998765
No 21
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.8e-35 Score=313.14 Aligned_cols=291 Identities=20% Similarity=0.314 Sum_probs=235.2
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+++|.+.|++|+|+|++++||||+.||+|+|||..+++....+..+.....++.+.+++. .++
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~-------------~la-- 122 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC-------------AIA-- 122 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSS-------------EEE--
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCC-------------EEE--
Confidence 46889999999999999999999999999999999998887777766655555555544332 111
Q ss_pred eeecCCccEEEcCCccc--cccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEE
Q 005352 324 LRRTSESACVVFPPKVF--RILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~ 399 (701)
....+..+.+++...- .........+.+|...|.+++|+|++ .|++++.|++|++||+.+++++..+. |...|.+
T Consensus 123 -sg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~ 201 (354)
T 2pbi_B 123 -CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLC 201 (354)
T ss_dssp -EESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred -EeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEE
Confidence 1112222222221110 01113456778899999999999999 99999999999999999999998886 8999999
Q ss_pred EEEeeC-CCCEEEEEEcCCcEEEEeCCCCcEEEE-ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 400 VHFNPV-DDNYFISGSIDGKVRIWAVLSCHVVDW-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 400 l~f~p~-~~~~l~sgs~dg~v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
++|+|. ++++|++|+.||.|++||+++++.+.. ..|...|++++|+|+++.|++|+.|+.|++||++.......
T Consensus 202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~---- 277 (354)
T 2pbi_B 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI---- 277 (354)
T ss_dssp EEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE----
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE----
Confidence 999883 358999999999999999999987754 46889999999999999999999999999999998754321
Q ss_pred eecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 478 ~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
.. ...+...+++++|+| ++.+|++++.|+.|++||+.+.........|...|++++|+|+|++|++|+.||.|+||+
T Consensus 278 -~~-~~~~~~~~~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 278 -YS-KESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -EC-CTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -Ec-CCCcccceeEEEEeC-CCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 11 223345789999999 789999999999999999987666666666999999999999999999999999999996
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.2e-36 Score=314.64 Aligned_cols=308 Identities=21% Similarity=0.290 Sum_probs=236.8
Q ss_pred ceeccCCC-cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDG-SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~-~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+.+++|.+ .|++++|+|+|++||+|+.|++|+|||+.++.....
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----------------------------------- 53 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----------------------------------- 53 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE-----------------------------------
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee-----------------------------------
Confidence 46788988 999999999999999999999999999987642110
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe--eeeeec-CCCCeE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYVT 398 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~--~~~~~~-h~~~V~ 398 (701)
.....+|...|.+++|+|++ +|++++.|++|++||+..+. ++..+. |...|.
T Consensus 54 ------------------------~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~ 109 (345)
T 3fm0_A 54 ------------------------SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVK 109 (345)
T ss_dssp ------------------------EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEE
T ss_pred ------------------------eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCce
Confidence 11225799999999999999 99999999999999998764 455555 999999
Q ss_pred EEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE---E-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeee
Q 005352 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHV---V-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~---~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~ 474 (701)
+++|+| ++++|++|+.|+.|++||+.++.. + ....|...|.+++|+|++++|++|+.|+.|++||+.........
T Consensus 110 ~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~ 188 (345)
T 3fm0_A 110 SVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA 188 (345)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE
T ss_pred EEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE
Confidence 999999 999999999999999999987642 2 34568889999999999999999999999999999876543221
Q ss_pred eEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc---------------eeeecc-cCCCCeEEEEEe
Q 005352 475 EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI---------------GKYKGL-RRSGNQLSACFT 538 (701)
Q Consensus 475 ~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~---------------~~~~~~-~~~~~v~~l~~s 538 (701)
....|...|.+++|+| ++.+|++++.|+.|+||+..... ...... .|...|.+++|+
T Consensus 189 ------~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 261 (345)
T 3fm0_A 189 ------TLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261 (345)
T ss_dssp ------EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC
T ss_pred ------EecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEe
Confidence 1345678899999999 78999999999999999853110 111111 277899999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCC
Q 005352 539 SDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPA 618 (701)
Q Consensus 539 ~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~ 618 (701)
|++.+|++++.|+.|++|+......+.... ..+ . ...+..+...+..++|+|+
T Consensus 262 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~----~~~---------~--------------~~~~~~h~~~V~~v~~~p~ 314 (345)
T 3fm0_A 262 QLTGALATACGDDAIRVFQEDPNSDPQQPT----FSL---------T--------------AHLHQAHSQDVNCVAWNPK 314 (345)
T ss_dssp TTTCCEEEEETTSCEEEEEECTTSCTTSCC----EEE---------E--------------EEETTSSSSCEEEEEECSS
T ss_pred cCCCEEEEEeCCCeEEEEEeCCCCCcceee----EEE---------E--------------eeecccccCcEeEeEEeCC
Confidence 999999999999999999987654221000 000 0 0001112345777888886
Q ss_pred ccccCccccccCCCCcccCCCCccCCCCcc
Q 005352 619 RFSLGQEYVFESFPKGCATWPEEKLPALSQ 648 (701)
Q Consensus 619 ~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~ 648 (701)
. ...+++++.|+.+++|+........+
T Consensus 315 ~---~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 315 E---PGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp S---TTEEEEEETTSCEEEEEECC------
T ss_pred C---ceEEEEcCCCCcEEEEEecCCCCccc
Confidence 2 34788999999999999887765444
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.3e-36 Score=315.52 Aligned_cols=297 Identities=19% Similarity=0.299 Sum_probs=232.3
Q ss_pred cccC-cce--eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 201 DKQG-EGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 201 ~~~~-~~~--~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
.|.. .+. ++++++..+++++.|+.|+||+......... .....+|.+.|.+++|+|+|++||+|+.|++|+||
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence 4444 444 4566677889999999999999764321111 11236799999999999999999999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
++..+.. +.+..+.+|...|
T Consensus 89 ~~~~~~~------------------------------------------------------------~~~~~~~~h~~~v 108 (345)
T 3fm0_A 89 KKNQDDF------------------------------------------------------------ECVTTLEGHENEV 108 (345)
T ss_dssp EECCC-E------------------------------------------------------------EEEEEECCCSSCE
T ss_pred EccCCCe------------------------------------------------------------EEEEEccCCCCCc
Confidence 9876431 2345678899999
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCCCe---eeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDH---CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-- 430 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~---~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-- 430 (701)
.+++|+|++ +|++++.|++|++||+.++. ++..+. |...|.+++|+| ++.+|++++.|+.|++||+.++...
T Consensus 109 ~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~ 187 (345)
T 3fm0_A 109 KSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCC 187 (345)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEE
T ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEE
Confidence 999999999 99999999999999998764 344444 889999999999 9999999999999999999887533
Q ss_pred -EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee--------eeEEeecccCCCCCCeeEEEEecCCCCE
Q 005352 431 -DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD--------AEICVHSKKKAPCKRITGFQFLPQDSSK 501 (701)
Q Consensus 431 -~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~--------~~~~~~~~~~~~~~~i~~l~~~p~~~~~ 501 (701)
....|...|++++|+|++++|++|+.|+.|++|+......... ...........|...|.+++|+| ++..
T Consensus 188 ~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~ 266 (345)
T 3fm0_A 188 ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ-LTGA 266 (345)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT-TTCC
T ss_pred EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec-CCCE
Confidence 4567889999999999999999999999999999643211000 00111122234678899999999 6889
Q ss_pred EEEEECCCcEEEEeCCccc----ee--e---ecccCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCCC
Q 005352 502 VMVSCADSQVRILQGPNVI----GK--Y---KGLRRSGNQLSACFTSDG-KHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 502 l~~~s~dg~I~iwd~~~~~----~~--~---~~~~~~~~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
|++++.|+.|++|+..... .. + ....|...|++++|+|++ .+|++|+.||.|++|++.+++.
T Consensus 267 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 267 LATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred EEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 9999999999999975321 11 1 123588999999999998 5999999999999999988764
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-36 Score=313.04 Aligned_cols=300 Identities=19% Similarity=0.244 Sum_probs=224.6
Q ss_pred eeecccCcceeeecCccccccccccceEEEEEccCccchhhhcccCcee-c-cCCCcEEEEEEccCCCEEEEEeCCCcEE
Q 005352 198 CVVDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI-Q-AHDGSILTMKFSPDGQYLASAGDDGVVR 275 (701)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l-~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 275 (701)
.+..|.+.+.++.++++.+++++.|+.|+||++........ ..+ . +|.+.|++++|+|++++||+|+.|++|+
T Consensus 9 ~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~-----~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLI-----DVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp EEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEE-----EEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEE-----EEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 34467788888988888888999999999999865321111 223 3 3999999999999999999999999999
Q ss_pred EEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCcc
Q 005352 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (701)
Q Consensus 276 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 355 (701)
||++....... . ..+.+..+.+|..
T Consensus 84 iw~~~~~~~~~-~------------------------------------------------------~~~~~~~~~~h~~ 108 (330)
T 2hes_X 84 IWAKEESADRT-F------------------------------------------------------EMDLLAIIEGHEN 108 (330)
T ss_dssp EEEC--------C------------------------------------------------------CCEEEEEEC----
T ss_pred EEEcccCcCcc-c------------------------------------------------------cceeEEEEcCCCC
Confidence 99986432000 0 0023566789999
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCC----Ceeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC--
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGN----DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-- 427 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~----~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~-- 427 (701)
.|.+++|+|++ +|++++.|++|++||+.. .+++..+. |...|++++|+| ++.+|++++.|++|++||+.++
T Consensus 109 ~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~ 187 (330)
T 2hes_X 109 EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDW 187 (330)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEE
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCe
Confidence 99999999999 999999999999999943 24556665 899999999999 9999999999999999999776
Q ss_pred cEE-EEecCCCcEEEEEEeeC--CCeEEEEecCCcEEEEECCCCeeeeeee-EEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 428 HVV-DWVDIRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAE-ICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 428 ~~~-~~~~~~~~i~~i~~sp~--g~~l~~gs~dg~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
+.+ .+..|...|.+++|+|+ +..|++|+.|++|++||+.......... .........|...|.+++|++ +.+|+
T Consensus 188 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~~l~ 265 (330)
T 2hes_X 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF--NGLIA 265 (330)
T ss_dssp EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT--TSCEE
T ss_pred eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC--CCEEE
Confidence 333 45578899999999998 6789999999999999986532100000 111112233678899999997 35899
Q ss_pred EEECCCcEEEEeCCccc--eee-ecccCCC-CeEEEEEec--CCCEEEEEeCCCcEEEEeCCC
Q 005352 504 VSCADSQVRILQGPNVI--GKY-KGLRRSG-NQLSACFTS--DGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~--~~~-~~~~~~~-~v~~l~~s~--dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
+++.|+.|++||..... ... ....|.. .|.+++|+| ++++|++|+.||.|+||+++.
T Consensus 266 s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 266 SVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999999999976532 111 1234665 899999999 789999999999999999864
No 25
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-36 Score=324.99 Aligned_cols=300 Identities=20% Similarity=0.307 Sum_probs=243.2
Q ss_pred eecccCcceeeec--CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEE
Q 005352 199 VVDKQGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (701)
Q Consensus 199 ~~~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 276 (701)
+..|.+.+.++.+ ++..+++++.|++|+||+..... ....+.+|...|.+++|+|+|++||+|+.|+.|++
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-------~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-------KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-------EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 3456777776654 55678999999999999875432 22457889999999999999999999999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
|++.+...... .......+.+|.+.
T Consensus 135 w~~~~~~~~~~-------------------------------------------------------~~~~~~~~~gh~~~ 159 (380)
T 3iz6_a 135 FNLSSQADRDG-------------------------------------------------------NMPVSRVLTGHKGY 159 (380)
T ss_dssp EECCCCSSCCC-------------------------------------------------------SSTTCCBCCCCSSC
T ss_pred EECCCCccccC-------------------------------------------------------CccceeeccCCCcc
Confidence 99875421000 00223456789999
Q ss_pred eEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeee------cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-C
Q 005352 357 ILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVF------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-C 427 (701)
Q Consensus 357 I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~------~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-~ 427 (701)
|.++.|+|++ .|++|+.|++|++||+.+++++..+ .|...|.+++|+|.++++|++|+.|++|++||++. .
T Consensus 160 v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~ 239 (380)
T 3iz6_a 160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239 (380)
T ss_dssp CCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC
T ss_pred eEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC
Confidence 9999999975 8999999999999999999998876 27889999999887889999999999999999984 3
Q ss_pred cEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE
Q 005352 428 HVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 428 ~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s 506 (701)
+.+ .+..|...|++++|+|++++|++|+.||+|++||+++++......... .....+...|++++|+| ++.+|++|+
T Consensus 240 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~-~g~~l~~g~ 317 (380)
T 3iz6_a 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP-DRNDNELPIVTSVAFSI-SGRLLFAGY 317 (380)
T ss_dssp CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC-SSSCCSSCSCSEEEECS-SSSEEEEEC
T ss_pred cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc-cccccccCceEEEEECC-CCCEEEEEE
Confidence 433 556789999999999999999999999999999999887643221110 11122334589999999 789999999
Q ss_pred CCCcEEEEeCCccceeeec----ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 507 ADSQVRILQGPNVIGKYKG----LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 507 ~dg~I~iwd~~~~~~~~~~----~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.|+.|++||.......... ..|...|.+++|+|+|++|++|+.|+.|+||++...+
T Consensus 318 ~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 318 SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999998765544333 4588999999999999999999999999999998765
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.7e-35 Score=313.61 Aligned_cols=290 Identities=18% Similarity=0.263 Sum_probs=224.4
Q ss_pred ccCcceee--ecCccccccccc------cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCc
Q 005352 202 KQGEGERV--RLNEEDAMFCSK------VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGV 273 (701)
Q Consensus 202 ~~~~~~~~--~~~~~~~~~~~~------d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 273 (701)
|+..+.++ ++++..+++++. |+.|++|+......... ......+|...|++++|+|++. +++++.||+
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~---~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES---LCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG---GCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee---EecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 55556555 455667777776 67788887543322111 1223457999999999999985 556788999
Q ss_pred EEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCC
Q 005352 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (701)
Q Consensus 274 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 353 (701)
|+|||+.+++... .......+|
T Consensus 117 v~lWd~~~~~~~~----------------------------------------------------------~~~~~~~~h 138 (357)
T 4g56_B 117 VELWEILEKESLL----------------------------------------------------------VNKFAKYEH 138 (357)
T ss_dssp EEEC--------C----------------------------------------------------------CCCEEECCC
T ss_pred EEEeeccccceeE----------------------------------------------------------EEeeccCCC
Confidence 9999998765321 112334679
Q ss_pred ccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
...|++++|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+|....+|++++.||.|++||+++++...
T Consensus 139 ~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~ 218 (357)
T 4g56_B 139 DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT 218 (357)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee
Confidence 9999999999999 99999999999999999999999887 899999999999444689999999999999999887664
Q ss_pred E---ecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 432 W---VDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 432 ~---~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
. ..+...+++++|+|++ .+|++|+.|+.|++||+++.+.... ...+...|++++|+|++..+|++++.
T Consensus 219 ~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~--------~~~~~~~v~~l~~sp~~~~~lasgs~ 290 (357)
T 4g56_B 219 RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT--------SAVHSQNITGLAYSYHSSPFLASISE 290 (357)
T ss_dssp BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE--------ECCCSSCEEEEEECSSSSCCEEEEET
T ss_pred eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE--------EeccceeEEEEEEcCCCCCEEEEEeC
Confidence 3 3456789999999974 6788999999999999988764321 23456789999999966688999999
Q ss_pred CCcEEEEeCCccceeeecccCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCC
Q 005352 508 DSQVRILQGPNVIGKYKGLRRSGNQLSACFTS-DGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 508 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|++|+|||+..... +....|...|++++|+| ++.+|+|++.||+|++|++....
T Consensus 291 D~~i~iwd~~~~~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 291 DCTVAVLDADFSEV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TSCEEEECTTSCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCEEEEEECCCCcE-eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 99999999986543 33446899999999998 79999999999999999997654
No 27
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.4e-35 Score=360.24 Aligned_cols=449 Identities=17% Similarity=0.189 Sum_probs=325.9
Q ss_pred cccCcceeeecCc--c--ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEE
Q 005352 201 DKQGEGERVRLNE--E--DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (701)
Q Consensus 201 ~~~~~~~~~~~~~--~--~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 276 (701)
.|...+.++.+.+ + .+++++.|+.|++|+..... ....+.+|.+.|++++|+|++++|++|+.||.|++
T Consensus 697 ~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-------CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-------EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-------hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence 4556666666544 2 46678999999999986542 22457789999999999999999999999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEE-cCCcc
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF-HGHSG 355 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~ 355 (701)
||+.+++....+...................+..+.+.+.+..++... ...+.+++.... ..+..+ .+|..
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----~~~v~~~d~~~~----~~~~~~~~~~~~ 841 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA----KNKVLLFDIHTS----GLLAEIHTGHHS 841 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----TTEEEEEETTTC----CEEEEEECSSSS
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----CCcEEEEEecCC----CceeEEcCCCCC
Confidence 999998877666543221111111111112233344444444333321 223333332221 223333 48999
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-------
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS------- 426 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~------- 426 (701)
.|.+++|+|++ ++++++.|+.|++||+.++..+..+. |...|++++|+| ++++|++++.||.|++||+.+
T Consensus 842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~ 920 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAI 920 (1249)
T ss_dssp CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSS
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeee
Confidence 99999999999 99999999999999999999888876 889999999999 999999999999999998532
Q ss_pred ------------------------------------------------------------------------CcEE-EEe
Q 005352 427 ------------------------------------------------------------------------CHVV-DWV 433 (701)
Q Consensus 427 ------------------------------------------------------------------------~~~~-~~~ 433 (701)
++.. ...
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence 1111 122
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
.|...|++++|+|+++++++++.||.|++||+.++.... ...+...|.++.|+| ...+++++.|+.|++
T Consensus 1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~---------~~~~~~~v~~~~~~~--~~~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF---------LQAHQETVKDFRLLQ--DSRLLSWSFDGTVKV 1069 (1249)
T ss_dssp CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC---------CBCCSSCEEEEEECS--SSEEEEEESSSEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE---------EecCCCcEEEEEEcC--CCcEEEEECCCcEEE
Confidence 466778999999999999999999999999999876532 335668899999999 457889999999999
Q ss_pred EeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccc--cccccccccccCCceEE-ecCCC
Q 005352 514 LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQ--AKTIRSLERFTTNASIA-IPWCG 590 (701)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~a-~~~~~ 590 (701)
||+.+.........|...|.+++|+|++++|++++.||.|++||+.+++...... ...+..+...+.+..++ ...+|
T Consensus 1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg 1149 (1249)
T 3sfz_A 1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1149 (1249)
T ss_dssp EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCC
Confidence 9998766555555688999999999999999999999999999998877433222 22344444444433333 33344
Q ss_pred -CCCCCCCCCCcccc-----------CCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhh
Q 005352 591 -LKCGNAEKEPQLHV-----------SDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKS 658 (701)
Q Consensus 591 -~~~~~~~~~~~~~~-----------~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~ 658 (701)
...|+......... .....+..++|+|+ +..+++++ +.+++|+......+..+..+
T Consensus 1150 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d----g~~l~s~~--g~v~vwd~~~g~~~~~~~~~------ 1217 (1249)
T 3sfz_A 1150 EIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPD----SKTLVSAG--GYLKWWNVATGDSSQTFYTN------ 1217 (1249)
T ss_dssp CCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTT----SSCEEEES--SSEEEBCSSSCBCCCCCCCS------
T ss_pred EEEEEECCCCceEEEeccccccccccccCceEEEEEECCC----CCEEEECC--CeEEEEECCCCceeeeeecc------
Confidence 35565544333222 23455788999997 55666654 89999999988877777655
Q ss_pred hhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 659 QYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
...+.+++++++ |.+|++++.||.|++|+.
T Consensus 1218 -----~~~i~~~~~s~d-g~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1218 -----GTNLKKIHVSPD-FRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp -----SCCCCCCEECSS-SCCEEEECTTCCEEEECC
T ss_pred -----CCcccEEEECCC-CCEEEEecCCcEEEEEee
Confidence 456888899999 999999999999999984
No 28
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.6e-35 Score=302.46 Aligned_cols=283 Identities=19% Similarity=0.252 Sum_probs=232.9
Q ss_pred ecccCcceeee--cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 200 VDKQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 200 ~~~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
..|.+.+.++. +++..+++++.|+.|+||++.... ..+.+.+|..+|.+++|+|++++|++|+.|++|++|
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-------eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 35666676554 556678899999999999976432 224577899999999999999999999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
|+.+++ .+..+.+|...|
T Consensus 83 d~~~~~--------------------------------------------------------------~~~~~~~h~~~v 100 (304)
T 2ynn_A 83 NYNTGE--------------------------------------------------------------KVVDFEAHPDYI 100 (304)
T ss_dssp ETTTCC--------------------------------------------------------------EEEEEECCSSCE
T ss_pred ECCCCc--------------------------------------------------------------EEEEEeCCCCcE
Confidence 998764 345567899999
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCCC-eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE--E
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--W 432 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~~-~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~--~ 432 (701)
.+++|+|++ +|++|+.|++|++||++++ .+...+. |...|.+++|+|.++.+|++|+.|++|++||+++..... .
T Consensus 101 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~ 180 (304)
T 2ynn_A 101 RSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180 (304)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred EEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec
Confidence 999999999 9999999999999999887 4445554 999999999999667899999999999999998765442 2
Q ss_pred ecCCCcEEEEEEee--CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc
Q 005352 433 VDIRQIVTAVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (701)
Q Consensus 433 ~~~~~~i~~i~~sp--~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~ 510 (701)
..+...+..++|+| ++.+|++|+.|+.|++||+++++.... ...|...|.+++|+| ++.+|++++.|+.
T Consensus 181 ~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~--------~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~ 251 (304)
T 2ynn_A 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT--------LEGHMSNVSFAVFHP-TLPIIISGSEDGT 251 (304)
T ss_dssp CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE--------EECCSSCEEEEEECS-SSSEEEEEETTSC
T ss_pred cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee--------eCCCCCCEEEEEECC-CCCEEEEEcCCCe
Confidence 34567899999987 778999999999999999998765432 234667899999999 7889999999999
Q ss_pred EEEEeCCccceeeecccCCCCeEEEEEecCCC--EEEEEeCCCcEEEEeCCCC
Q 005352 511 VRILQGPNVIGKYKGLRRSGNQLSACFTSDGK--HIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 511 I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~--~l~sgs~Dg~I~iWd~~~~ 561 (701)
|++||..+.........+...+.+++|+|++. +|++|+.| .+.+|++.+.
T Consensus 252 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~~ 303 (304)
T 2ynn_A 252 LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGND 303 (304)
T ss_dssp EEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC--
T ss_pred EEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEeccC
Confidence 99999987766666556888999999999885 57777755 4778887653
No 29
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-36 Score=356.41 Aligned_cols=405 Identities=9% Similarity=0.102 Sum_probs=272.7
Q ss_pred cccCcceeee--cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|...+.++. +++..+++|+.|+.|+||+...... .....|..+|++|+|+| |++|++++.|++|+|||
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~--------~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV--------VIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLS 85 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE--------EEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEE
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE--------EEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEE
Confidence 4556666554 5566788899999999998643211 01224788999999999 88999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+++.+ ..+. |...|+
T Consensus 86 ~~~~~~~--------------------------------------------------------------~~~~-~~~~V~ 102 (902)
T 2oaj_A 86 LYSQKVL--------------------------------------------------------------TTVF-VPGKIT 102 (902)
T ss_dssp TTTCSEE--------------------------------------------------------------EEEE-CSSCEE
T ss_pred CCCCcEE--------------------------------------------------------------EEEc-CCCCEE
Confidence 9876432 2222 557899
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeee-----------ee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR-----------VF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~-----------~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~ 425 (701)
+++|+|++ +|++|+.||+|++||+.++++.. .+ .|.+.|++++|+|.+...|++|+.||.| +||++
T Consensus 103 ~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~ 181 (902)
T 2oaj_A 103 SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV 181 (902)
T ss_dssp EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC
Confidence 99999999 99999999999999999987641 11 2888999999999445789999999999 99999
Q ss_pred CCcEEEEecC-------------------CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEe-eccc---
Q 005352 426 SCHVVDWVDI-------------------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV-HSKK--- 482 (701)
Q Consensus 426 ~~~~~~~~~~-------------------~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~-~~~~--- 482 (701)
+++.+..+.. ...|++++|+|+|++|++|+.||.|++||+++++......+.. ....
T Consensus 182 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~ 261 (902)
T 2oaj_A 182 ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQP 261 (902)
T ss_dssp TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCT
T ss_pred CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCC
Confidence 9987755432 3679999999999999999999999999998876532110000 0000
Q ss_pred ---C---CCCCCeeEEEEecC-----------------------------------------------------------
Q 005352 483 ---K---APCKRITGFQFLPQ----------------------------------------------------------- 497 (701)
Q Consensus 483 ---~---~~~~~i~~l~~~p~----------------------------------------------------------- 497 (701)
. .+...|++++|++.
T Consensus 262 ~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 341 (902)
T 2oaj_A 262 DYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPT 341 (902)
T ss_dssp TCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSS
T ss_pred cCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCC
Confidence 0 11224555555321
Q ss_pred ---------------------CCCEEEEEECCCcEEEEeCCccceeee-------cccCCCCeE----------------
Q 005352 498 ---------------------DSSKVMVSCADSQVRILQGPNVIGKYK-------GLRRSGNQL---------------- 533 (701)
Q Consensus 498 ---------------------~~~~l~~~s~dg~I~iwd~~~~~~~~~-------~~~~~~~v~---------------- 533 (701)
++..+++++.|+.|++||+.+...... ...|...|+
T Consensus 342 ~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~ 421 (902)
T 2oaj_A 342 NVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGAL 421 (902)
T ss_dssp SSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHH
T ss_pred CCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHH
Confidence 112344444455566666532211110 011223333
Q ss_pred ------------------EEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCc-------------cccccccccccccCCc
Q 005352 534 ------------------SACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAH-------------DQAKTIRSLERFTTNA 582 (701)
Q Consensus 534 ------------------~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 582 (701)
+++|+|++++|+||+.|++|++||+.++..... .....+.++...+.+.
T Consensus 422 ~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~ 501 (902)
T 2oaj_A 422 SAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETL 501 (902)
T ss_dssp HTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT
T ss_pred hcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCC
Confidence 445578899999999999999999998853211 0111233333333333
Q ss_pred eEEec-CCCC-CCCCCCCCC---------------------------------------------ccc--cCCCCCCCcc
Q 005352 583 SIAIP-WCGL-KCGNAEKEP---------------------------------------------QLH--VSDDDSPENL 613 (701)
Q Consensus 583 ~~a~~-~~~~-~~~~~~~~~---------------------------------------------~~~--~~~~~~~~~l 613 (701)
.+|.. ..+. ..|+..... ... ..+...+..+
T Consensus 502 ~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sv 581 (902)
T 2oaj_A 502 ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAI 581 (902)
T ss_dssp EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEE
T ss_pred eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEE
Confidence 33322 2222 334322110 011 1245567888
Q ss_pred ccCCCccccCccccccCCCCcccCCCCccCCCCc-----ccc-ccccchhhhhhhhhccccccccc-----CCC--ccEE
Q 005352 614 AFAPARFSLGQEYVFESFPKGCATWPEEKLPALS-----QLS-SASALHKSQYKFLKSSCLCTTSS-----HAW--GLVI 680 (701)
Q Consensus 614 ~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~--g~~i 680 (701)
+|+|+ + .+++++.|+.+++|+.+....+. .+. +| .+.|++++|+ ++. +++|
T Consensus 582 afSpd----G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh-----------~~~V~sv~Fs~~~~~~Dg~~~~~l 645 (902)
T 2oaj_A 582 NNSNI----G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ-----------SACVTCIEFVIMEYGDDGYSSILM 645 (902)
T ss_dssp EECBT----S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC-----------CCCEEEEEEEEEECTTSSSEEEEE
T ss_pred EecCC----c-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc-----------ccceEEEEEEEEecCCCCCcceEE
Confidence 99997 6 78899999999999987655432 121 22 4568888898 761 5999
Q ss_pred EEecCCCeEeEEee
Q 005352 681 VTAGWDGRIRSFLN 694 (701)
Q Consensus 681 vTgg~DG~Irvw~~ 694 (701)
++|+.||+||+|+.
T Consensus 646 ~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 646 VCGTDMGEVITYKI 659 (902)
T ss_dssp EEEETTSEEEEEEE
T ss_pred EEEecCCcEEEEEE
Confidence 99999999999985
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-36 Score=323.46 Aligned_cols=339 Identities=18% Similarity=0.218 Sum_probs=257.6
Q ss_pred ccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEe----ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 247 QAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQV----VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
..|.+.|++++|+|+|+ +||+|+.||.|++|++ .+++.+..+.. .
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~------------------------------~ 91 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI------------------------------I 91 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE------------------------------E
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc------------------------------c
Confidence 45779999999999999 9999999999999999 66652110000 0
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEE
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~ 399 (701)
..+... ........+|...|++++|+|++ +|++++.||.|++|| .+++.+..+. |...|.+
T Consensus 92 ~~~~~~----------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~ 154 (425)
T 1r5m_A 92 AELRHP----------------FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVS 154 (425)
T ss_dssp EEEECC----------------CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEE
T ss_pred cccccc----------------ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEE
Confidence 000000 00111234578899999999999 999999999999999 5666666665 8999999
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-CCc---------------EEEEEEeeCCCeEEEEecCCcEEEE
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQI---------------VTAVCYRPDGQGGIVGSMMGDCRFY 463 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~---------------i~~i~~sp~g~~l~~gs~dg~v~i~ 463 (701)
++|+| ++++|++++.|+.|++||+.+++.+..... ... +.+++|+|++ .+++++.+|.|++|
T Consensus 155 ~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~ 232 (425)
T 1r5m_A 155 VKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVY 232 (425)
T ss_dssp EEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEE
T ss_pred EEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEE
Confidence 99999 999999999999999999999887755443 333 8899999985 58899999999999
Q ss_pred ECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCE
Q 005352 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKH 543 (701)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 543 (701)
|+.+.+.... ...+...|.+++|+| ++.+|++++.|+.|++||+...........|...|.+++|+|++ +
T Consensus 233 d~~~~~~~~~--------~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 302 (425)
T 1r5m_A 233 QITEKTPTGK--------LIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-K 302 (425)
T ss_dssp ETTCSSCSEE--------ECCCSSCEEEEEEET-TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-E
T ss_pred EcCCCceeee--------eccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-E
Confidence 9998654321 234567899999999 68899999999999999998766555555688999999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccC
Q 005352 544 IVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLG 623 (701)
Q Consensus 544 l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~ 623 (701)
|++++.|+.|++||+.+++.. ..+ ......+..++|+|+ +
T Consensus 303 l~~~~~d~~i~i~d~~~~~~~--------~~~----------------------------~~~~~~i~~~~~s~~----~ 342 (425)
T 1r5m_A 303 VISCSMDGSVRLWSLKQNTLL--------ALS----------------------------IVDGVPIFAGRISQD----G 342 (425)
T ss_dssp EEEEETTSEEEEEETTTTEEE--------EEE----------------------------ECTTCCEEEEEECTT----S
T ss_pred EEEEeCCCcEEEEECCCCcEe--------Eec----------------------------ccCCccEEEEEEcCC----C
Confidence 999999999999999876411 000 011234566778886 6
Q ss_pred ccccccCCCCcccCCCCccCC--------------------CCccccccccchhhhhhhhhc--ccccccccCCCccEEE
Q 005352 624 QEYVFESFPKGCATWPEEKLP--------------------ALSQLSSASALHKSQYKFLKS--SCLCTTSSHAWGLVIV 681 (701)
Q Consensus 624 ~~~~~~s~d~~~~~W~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~iv 681 (701)
..+++++.++.+++|+..... .+..+..| .. .+.+++++++ +.+|+
T Consensus 343 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~-~~~l~ 410 (425)
T 1r5m_A 343 QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS-----------QDNDYIFDLSWNCA-GNKIS 410 (425)
T ss_dssp SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCT-----------TCCCCEEEEEECTT-SSEEE
T ss_pred CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCc-----------ccCCceEEEEccCC-CceEE
Confidence 788889999999999987665 33333333 23 6788889898 99999
Q ss_pred EecCCCeEeEEeecC
Q 005352 682 TAGWDGRIRSFLNYG 696 (701)
Q Consensus 682 Tgg~DG~Irvw~~~g 696 (701)
+|+.||.|++|+.-|
T Consensus 411 ~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 411 VAYSLQEGSVVAIPG 425 (425)
T ss_dssp EEESSSCCEEEECCC
T ss_pred EEecCceEEEEeecC
Confidence 999999999998644
No 31
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.9e-36 Score=320.75 Aligned_cols=295 Identities=17% Similarity=0.327 Sum_probs=237.1
Q ss_pred CceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+.+++|.+.|++++|+|++++||||+.||+|+|||+.+++.
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-------------------------------------- 100 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-------------------------------------- 100 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE--------------------------------------
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--------------------------------------
Confidence 356889999999999999999999999999999999877642
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe-------eeeee-cC
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-------CLRVF-PH 393 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~-------~~~~~-~h 393 (701)
...+.+|...|.+++|+|++ +|++|+.|+.|++||+.+.. ....+ .|
T Consensus 101 ------------------------~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh 156 (380)
T 3iz6_a 101 ------------------------THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGH 156 (380)
T ss_dssp ------------------------EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCC
T ss_pred ------------------------ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCC
Confidence 34556789999999999999 99999999999999997542 22223 38
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe------cCCCcEEEEEEee-CCCeEEEEecCCcEEEEECC
Q 005352 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV------DIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVS 466 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~------~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~ 466 (701)
.+.|.+++|.|..+..|++|+.|++|++||+.+++.+..+ .|...|.+++|+| +++.|++|+.|+.|++||++
T Consensus 157 ~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~ 236 (380)
T 3iz6_a 157 KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236 (380)
T ss_dssp SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETT
T ss_pred CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECC
Confidence 8999999999955678999999999999999999877544 5778899999987 88999999999999999998
Q ss_pred CCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeeccc-------CCCCeEEEEEec
Q 005352 467 DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLR-------RSGNQLSACFTS 539 (701)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~-------~~~~v~~l~~s~ 539 (701)
...... .....|...|.+++|+| ++.+|++++.|++|++||+.+......... +...|++++|+|
T Consensus 237 ~~~~~~-------~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 237 ITSRAV-------RTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp TTCCCC-------EEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred CCCcce-------EEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence 432211 11345678899999999 789999999999999999986544332211 223589999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCc
Q 005352 540 DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPAR 619 (701)
Q Consensus 540 dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~ 619 (701)
+|++|++|+.||.|++||+.+++... .+. .....+...+..++|+|+
T Consensus 309 ~g~~l~~g~~dg~i~vwd~~~~~~~~--------~~~------------------------~~~~~h~~~v~~l~~s~d- 355 (380)
T 3iz6_a 309 SGRLLFAGYSNGDCYVWDTLLAEMVL--------NLG------------------------TLQNSHEGRISCLGLSSD- 355 (380)
T ss_dssp SSSEEEEECTTSCEEEEETTTCCEEE--------EEC------------------------CSCSSCCCCCCEEEECSS-
T ss_pred CCCEEEEEECCCCEEEEECCCCceEE--------EEe------------------------cccCCCCCceEEEEECCC-
Confidence 99999999999999999987765210 000 000112445778899997
Q ss_pred cccCccccccCCCCcccCCCCccC
Q 005352 620 FSLGQEYVFESFPKGCATWPEEKL 643 (701)
Q Consensus 620 ~~~~~~~~~~s~d~~~~~W~~~~~ 643 (701)
+..+++++.|+.+++|+....
T Consensus 356 ---g~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 356 ---GSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp ---SSEEEEECTTSCEEEEECCSS
T ss_pred ---CCEEEEeeCCCCEEEEecCCC
Confidence 778999999999999997654
No 32
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7e-35 Score=302.62 Aligned_cols=287 Identities=28% Similarity=0.486 Sum_probs=232.5
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
..+.+|.+.|++++|+|++++||+|+.||.|++|++.+++
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---------------------------------------- 56 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---------------------------------------- 56 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----------------------------------------
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----------------------------------------
Confidence 4678999999999999999999999999999999987653
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
....+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+. |...|.+++
T Consensus 57 ----------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 114 (312)
T 4ery_A 57 ----------------------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 114 (312)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred ----------------------cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 234567899999999999999 99999999999999999999988886 899999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
|+| ++++|++|+.|+.|++||+++++.+. ...|..+|.+++|+|++++|++++.||.|++||+++++....
T Consensus 115 ~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~------- 186 (312)
T 4ery_A 115 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT------- 186 (312)
T ss_dssp ECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------
T ss_pred EcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE-------
Confidence 999 99999999999999999999988774 445788999999999999999999999999999998764321
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCC--eEEEEEe-cCCCEEEEEeCCCcEEEEe
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGN--QLSACFT-SDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~--v~~l~~s-~dg~~l~sgs~Dg~I~iWd 557 (701)
....+...+..++|+| ++.+|++++.|+.|++||+.+.........|... .....++ +++.+|++|+.||.|++||
T Consensus 187 ~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd 265 (312)
T 4ery_A 187 LIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265 (312)
T ss_dssp ECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEE
T ss_pred EeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEE
Confidence 1233456789999999 7899999999999999999876544443334332 2333444 6789999999999999999
Q ss_pred CCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccC--CCCcc
Q 005352 558 CIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFES--FPKGC 635 (701)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s--~d~~~ 635 (701)
+.+++. +..+. .+...+..++++|+ +..+++++ .|+.+
T Consensus 266 ~~~~~~--------~~~~~----------------------------~h~~~v~~~~~~p~----~~~l~s~~~~~d~~i 305 (312)
T 4ery_A 266 LQTKEI--------VQKLQ----------------------------GHTDVVISTACHPT----ENIIASAALENDKTI 305 (312)
T ss_dssp TTTCCE--------EEEEC----------------------------CCSSCEEEEEECSS----SSEEEEEECTTTCCE
T ss_pred CCCchh--------hhhhh----------------------------ccCCcEEEEeecCc----CCceEEEEccCCccE
Confidence 987652 11110 11223455677776 55566654 68999
Q ss_pred cCCCCc
Q 005352 636 ATWPEE 641 (701)
Q Consensus 636 ~~W~~~ 641 (701)
++|+.+
T Consensus 306 ~~W~~d 311 (312)
T 4ery_A 306 KLWKSD 311 (312)
T ss_dssp EEEECC
T ss_pred EEecCC
Confidence 999854
No 33
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-36 Score=325.99 Aligned_cols=341 Identities=17% Similarity=0.227 Sum_probs=262.0
Q ss_pred CCcEEEEEEccCCC-EEEEE----------eCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccc
Q 005352 250 DGSILTMKFSPDGQ-YLASA----------GDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKI 318 (701)
Q Consensus 250 ~~~I~~l~fspdg~-~Lasg----------s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (701)
...|.+++|+|+|+ +||+| +.|+.|+|||+.++...
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------------------- 58 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------------------- 58 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC---------------------------------
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC---------------------------------
Confidence 34688999999987 99999 89999999999876421
Q ss_pred eeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCC----Ceeeeeec-
Q 005352 319 SILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN----DHCLRVFP- 392 (701)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~----~~~~~~~~- 392 (701)
+++.. ..|...|.+++|+|++ +|++++.|+.|++||+.+ .+.+..+.
T Consensus 59 --------------------------~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~ 111 (416)
T 2pm9_A 59 --------------------------KPIAS-LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSN 111 (416)
T ss_dssp --------------------------SCSCC-CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC
T ss_pred --------------------------cEEEE-EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccC
Confidence 01111 2478899999999999 999999999999999988 34555555
Q ss_pred CCCCeEEEEEeeCC-CCEEEEEEcCCcEEEEeCCCCc------EEE----EecCCCcEEEEEEeeC-CCeEEEEecCCcE
Q 005352 393 HSNYVTCVHFNPVD-DNYFISGSIDGKVRIWAVLSCH------VVD----WVDIRQIVTAVCYRPD-GQGGIVGSMMGDC 460 (701)
Q Consensus 393 h~~~V~~l~f~p~~-~~~l~sgs~dg~v~iwd~~~~~------~~~----~~~~~~~i~~i~~sp~-g~~l~~gs~dg~v 460 (701)
|...|++++|+| + +++|++++.|+.|++||+.+++ ... ...|...|.+++|+|+ +..|++++.||.|
T Consensus 112 h~~~v~~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 190 (416)
T 2pm9_A 112 HSSSVKTVKFNA-KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFA 190 (416)
T ss_dssp SSSCCCEEEECS-SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCE
T ss_pred CccceEEEEEcC-CCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCE
Confidence 999999999999 6 8999999999999999999876 222 2467889999999999 7899999999999
Q ss_pred EEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC---cEEEEeCCccc-eeeecc-cCCCCeEEE
Q 005352 461 RFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS---QVRILQGPNVI-GKYKGL-RRSGNQLSA 535 (701)
Q Consensus 461 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg---~I~iwd~~~~~-~~~~~~-~~~~~v~~l 535 (701)
++||+++.+...... .......+...|.+++|+|++..++++++.|+ .|++||+.... ...... .|...|.++
T Consensus 191 ~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~ 268 (416)
T 2pm9_A 191 SIWDLKAKKEVIHLS--YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSL 268 (416)
T ss_dssp EEEETTTTEEEEEEC--CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEE
T ss_pred EEEECCCCCcceEEe--ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEE
Confidence 999999877543221 11112233678999999996568999999999 99999998753 223333 488999999
Q ss_pred EEec-CCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccc
Q 005352 536 CFTS-DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLA 614 (701)
Q Consensus 536 ~~s~-dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 614 (701)
+|+| ++++|++++.||.|++||+.+++.. ..+ ..+...+..++
T Consensus 269 ~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~--------~~~----------------------------~~~~~~v~~~~ 312 (416)
T 2pm9_A 269 DWCHQDEHLLLSSGRDNTVLLWNPESAEQL--------SQF----------------------------PARGNWCFKTK 312 (416)
T ss_dssp EECSSCSSCEEEEESSSEEEEECSSSCCEE--------EEE----------------------------ECSSSCCCCEE
T ss_pred EeCCCCCCeEEEEeCCCCEEEeeCCCCccc--------eee----------------------------cCCCCceEEEE
Confidence 9999 9999999999999999999876521 111 01133566788
Q ss_pred cCCCccccCccccccCCCCcccCCCCccCCCCccccc--------------------ccc-----chhhhhhhhhccccc
Q 005352 615 FAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSS--------------------ASA-----LHKSQYKFLKSSCLC 669 (701)
Q Consensus 615 ~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~--------------------~~~-----~~~~~~~~~~~~~~~ 669 (701)
|+|++ ...+++++.|+.+++|+............ +.. .. ...+++...+.+
T Consensus 313 ~s~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 388 (416)
T 2pm9_A 313 FAPEA---PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPA 388 (416)
T ss_dssp ECTTC---TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC-CCCSTTCCCSCC
T ss_pred ECCCC---CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc-cCCccccCCccc
Confidence 89961 26788999999999999877664332211 000 00 111224556778
Q ss_pred ccccCCCccEEEEecCCCeEeEEee
Q 005352 670 TTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 670 ~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
++++++ |++|++|+.||.|++|+.
T Consensus 389 ~~~s~d-g~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 389 AHWAFG-GKLVQITPDGKGVSITNP 412 (416)
T ss_dssp CEEETT-TEEECBCTTSSCBCCBCC
T ss_pred eEEeeC-CeEEEEeCCCCeEEEEEe
Confidence 889999 999999999999999984
No 34
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6e-35 Score=313.82 Aligned_cols=314 Identities=19% Similarity=0.305 Sum_probs=238.2
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
+|.+.|++++|+|+|++||+|+ |+.++||++.+++.+..+..+..... .
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~-----------------~------------- 110 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK-----------------D------------- 110 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------------
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccc-----------------c-------------
Confidence 5999999999999999999987 68999999988876554432210000 0
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeC
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV 405 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~ 405 (701)
.. .........+...|.+++|+|++ +|++|+.|++|++||+.+++.+..+. |...|++++|+|
T Consensus 111 ---------~~-----~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p- 175 (393)
T 1erj_A 111 ---------PE-----NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP- 175 (393)
T ss_dssp ------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-
T ss_pred ---------cc-----cccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-
Confidence 00 00001112345569999999999 99999999999999999999988886 999999999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
++++|++++.|++|++||+++++......+...+.+++|+| ++++|++|+.||.|++||++++......... ......
T Consensus 176 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~-~~~~~~ 254 (393)
T 1erj_A 176 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE-NESGTG 254 (393)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------CC
T ss_pred CCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc-ccCCCC
Confidence 99999999999999999999999888788888999999999 8999999999999999999987654322111 111245
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc------------eeeecccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI------------GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~------------~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
|...|.+++|+| ++.+|++++.|+.|++||+.... .......|...|.+++|+|++.+|++|+.|+.
T Consensus 255 h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~ 333 (393)
T 1erj_A 255 HKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 333 (393)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred CCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe
Confidence 778899999999 78999999999999999986421 22333458889999999999999999999999
Q ss_pred EEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCC
Q 005352 553 VYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFP 632 (701)
Q Consensus 553 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d 632 (701)
|++||+.+++. +..+.. +...+.++.|... ..++|+ +..+++++.|
T Consensus 334 v~iwd~~~~~~--------~~~l~~-h~~~v~~v~~~~~---------------------~~~~p~----~~~l~sgs~D 379 (393)
T 1erj_A 334 VLFWDKKSGNP--------LLMLQG-HRNSVISVAVANG---------------------SSLGPE----YNVFATGSGD 379 (393)
T ss_dssp EEEEETTTCCE--------EEEEEC-CSSCEEEEEECSS---------------------CTTCTT----CEEEEEEETT
T ss_pred EEEEECCCCeE--------EEEECC-CCCCEEEEEecCC---------------------cCcCCC----CCEEEEECCC
Confidence 99999988752 111111 2233334443321 123443 6678999999
Q ss_pred CcccCCCCccC
Q 005352 633 KGCATWPEEKL 643 (701)
Q Consensus 633 ~~~~~W~~~~~ 643 (701)
+.+++|+..+.
T Consensus 380 g~i~iW~~~~~ 390 (393)
T 1erj_A 380 CKARIWKYKKI 390 (393)
T ss_dssp SEEEEEEEEEC
T ss_pred CcEEECccccc
Confidence 99999997654
No 35
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.8e-34 Score=297.08 Aligned_cols=284 Identities=23% Similarity=0.339 Sum_probs=235.9
Q ss_pred ecccCcceeee--cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 200 VDKQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 200 ~~~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
..|...+.++. +++..+++++.|+.|+||+..... ..+.+.+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-------cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 35666676655 455678889999999999875432 124577899999999999999999999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
|+.+++ .+..+.+|...|
T Consensus 93 d~~~~~--------------------------------------------------------------~~~~~~~~~~~v 110 (312)
T 4ery_A 93 DVSSGK--------------------------------------------------------------CLKTLKGHSNYV 110 (312)
T ss_dssp ETTTCC--------------------------------------------------------------EEEEEECCSSCE
T ss_pred ECCCCc--------------------------------------------------------------EEEEEcCCCCCE
Confidence 997763 344567899999
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe--
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-- 433 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-- 433 (701)
.+++|+|++ +|++++.|++|++||+++++++..+. |...|.+++|+| ++++|++++.||.|++||+++++.+...
T Consensus 111 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 189 (312)
T 4ery_A 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLID 189 (312)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEec
Confidence 999999998 99999999999999999999988886 889999999999 9999999999999999999998877543
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
.+...+..++|+|++++|++++.||.|++||+++.+..... .. .. .........+.+.++.+|++++.|+.|++
T Consensus 190 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~-~~-~~~~~~~~~~~~~~~~~l~sg~~dg~i~v 263 (312)
T 4ery_A 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG-HK-NEKYCIFANFSVTGGKWIVSGSEDNLVYI 263 (312)
T ss_dssp SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE----CS-SC-CSSSCCCEEEECSSSCEEEECCTTSCEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE----Ee-cC-CceEEEEEEEEeCCCcEEEEECCCCEEEE
Confidence 35568999999999999999999999999999988754321 11 11 11122234555557889999999999999
Q ss_pred EeCCccceeeecccCCCCeEEEEEecCCCEEEEEe--CCCcEEEEeCC
Q 005352 514 LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG--EDSNVYMWNCI 559 (701)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs--~Dg~I~iWd~~ 559 (701)
||+.+.........|...|.+++|+|++.+|++++ .|+.|++|+.+
T Consensus 264 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 264 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99987766666666899999999999999999997 69999999864
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-35 Score=315.10 Aligned_cols=344 Identities=13% Similarity=0.133 Sum_probs=255.4
Q ss_pred cccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeE
Q 005352 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (701)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 299 (701)
+.|+.|+||++....... .. ....|...|++++|+|++++|++|+.||.|++|++.+....
T Consensus 42 ~~d~~v~iw~~~~~~~~~----~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~-------------- 102 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEK----PI-ASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA-------------- 102 (416)
T ss_dssp CCCCCCEEEESSSGGGCS----CS-CCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC--------------
T ss_pred CCCCeEEEEEccCCCCCc----EE-EEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc--------------
Confidence 789999999986543210 11 12258999999999999999999999999999998762100
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC-C-eEEEEECCCcE
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN-N-YLLSASIDKTV 377 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~-~l~s~s~dg~I 377 (701)
.+.+..+.+|...|.+++|+|+ + +|++++.|+.|
T Consensus 103 --------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 103 --------------------------------------------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEI 138 (416)
T ss_dssp --------------------------------------------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred --------------------------------------------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeE
Confidence 0234566789999999999998 5 99999999999
Q ss_pred EEEECCCCe------eeeee----cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-------CCcEE
Q 005352 378 RLWRVGNDH------CLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-------RQIVT 440 (701)
Q Consensus 378 ~iWd~~~~~------~~~~~----~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-------~~~i~ 440 (701)
++||+.+++ ....+ .|...|.+++|+|..+.+|++++.||.|++||+++++.+..... ...|.
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 218 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLS 218 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEE
T ss_pred EEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceE
Confidence 999999886 33333 48899999999993389999999999999999999987765543 67899
Q ss_pred EEEEeeCC-CeEEEEecCC---cEEEEECCCCeeeeeeeEEeecccC-CCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 441 AVCYRPDG-QGGIVGSMMG---DCRFYNVSDNHLELDAEICVHSKKK-APCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 441 ~i~~sp~g-~~l~~gs~dg---~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
+++|+|++ ..+++++.++ .|++||+++..... .... .|...|.+++|+|.++.+|++++.|+.|++||
T Consensus 219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL-------QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS-------BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc-------EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence 99999997 6899999998 99999998753211 1123 56788999999997789999999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCCCCCcccc----ccccccccccCCceEEecCCC
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDG-KHIVSAGEDSNVYMWNCIGHEEPAHDQA----KTIRSLERFTTNASIAIPWCG 590 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~ 590 (701)
+.+.........|...|.+++|+|++ .+|++++.|+.|++|++.+......... ........+......+ .+
T Consensus 292 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 368 (416)
T 2pm9_A 292 PESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREE---SK 368 (416)
T ss_dssp SSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------------------CC
T ss_pred CCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccc---cc
Confidence 98776666666688999999999999 8999999999999999998764332111 0000000010000000 00
Q ss_pred CCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCcc
Q 005352 591 LKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEK 642 (701)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~ 642 (701)
........ .........+..++|+|+ +..+++++.|+.+++|+.+.
T Consensus 369 ~~~~~~~~--~~~~~~~~~~~~~~~s~d----g~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 369 EKPSVFHL--QAPTWYGEPSPAAHWAFG----GKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp SCCCSSCC--CCCSTTCCCSCCCEEETT----TEEECBCTTSSCBCCBCCCC
T ss_pred cccccccc--cCCccccCCccceEEeeC----CeEEEEeCCCCeEEEEEecc
Confidence 00000000 011112334567889997 78888999999999999764
No 37
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5e-35 Score=309.74 Aligned_cols=290 Identities=14% Similarity=0.206 Sum_probs=242.8
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
+....+.+|.+.|++++|+|++ +|++|+.|++|++||..+++....+. |...|.+++|+| ++.+|++|+.|+.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEE
Confidence 5667899999999999999999 99999999999999999988887776 788999999999 99999999999999999
Q ss_pred eCCCC-------cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 423 AVLSC-------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 423 d~~~~-------~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
++... .......|...|.+++|+|++..|++++.|++|++||+.+++.... ...|...|.++.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~--------~~~h~~~v~~~~~~ 205 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS--------FHGHGADVLCLDLA 205 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE--------EECCSSCEEEEEEC
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE--------EcCCCCCeEEEEEE
Confidence 98643 2335567889999999999999999999999999999998765432 23456789999998
Q ss_pred cC-CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccc
Q 005352 496 PQ-DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRS 574 (701)
Q Consensus 496 p~-~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~ 574 (701)
|. ++.+|++++.|+.|++||+++.........|...|.+++|+|++.+|++|+.|+.|++||+.++.... .
T Consensus 206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~--------~ 277 (354)
T 2pbi_B 206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA--------I 277 (354)
T ss_dssp CCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--------E
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE--------E
Confidence 85 46899999999999999998776665556689999999999999999999999999999998754110 0
Q ss_pred cccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCcccccccc
Q 005352 575 LERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASA 654 (701)
Q Consensus 575 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~ 654 (701)
+. . ......+..++|+|+ +..+++++.|+.+++|+..+...+..+.+|
T Consensus 278 ~~-------------~-------------~~~~~~~~~~~~s~~----g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h-- 325 (354)
T 2pbi_B 278 YS-------------K-------------ESIIFGASSVDFSLS----GRLLFAGYNDYTINVWDVLKGSRVSILFGH-- 325 (354)
T ss_dssp EC-------------C-------------TTCCSCEEEEEECTT----SSEEEEEETTSCEEEEETTTCSEEEEECCC--
T ss_pred Ec-------------C-------------CCcccceeEEEEeCC----CCEEEEEECCCcEEEEECCCCceEEEEECC--
Confidence 00 0 000113445778886 678889999999999999888777666666
Q ss_pred chhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 655 LHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
.+.|.+++++++ |.+|+||+.||+||+|.
T Consensus 326 ---------~~~v~~l~~spd-g~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 326 ---------ENRVSTLRVSPD-GTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ---------SSCEEEEEECTT-SSCEEEEETTSEEEEEC
T ss_pred ---------CCcEEEEEECCC-CCEEEEEcCCCCEEecC
Confidence 467888999999 99999999999999994
No 38
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.6e-34 Score=308.79 Aligned_cols=296 Identities=20% Similarity=0.320 Sum_probs=233.0
Q ss_pred cccCcceeeec--CccccccccccceEEEEEccCccchhhhccc------------CceeccCCCcEEEEEEccCCCEEE
Q 005352 201 DKQGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYK------------GQEIQAHDGSILTMKFSPDGQYLA 266 (701)
Q Consensus 201 ~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~------------~~~l~~H~~~I~~l~fspdg~~La 266 (701)
.|...+.++.+ ++..+++++ ++.++||+........ .+.. ......+...|.+++|+|+|++||
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA-RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE-EECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE-EecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 46666665554 555666654 7899999986433211 0000 000112344699999999999999
Q ss_pred EEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCC
Q 005352 267 SAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346 (701)
Q Consensus 267 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (701)
+|+.|+.|+|||+.+++ .
T Consensus 140 s~~~d~~i~iwd~~~~~--------------------------------------------------------------~ 157 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRK--------------------------------------------------------------I 157 (393)
T ss_dssp EEETTSCEEEEETTTTE--------------------------------------------------------------E
T ss_pred EEcCCCeEEEEECCCCc--------------------------------------------------------------E
Confidence 99999999999997764 2
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~ 425 (701)
+..+.+|...|.+++|+|++ +|++++.|++|++||++++++...+.+...+.+++|+|.++++|++|+.|+.|++||++
T Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~ 237 (393)
T 1erj_A 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237 (393)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT
T ss_pred EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 34567899999999999999 99999999999999999999999999889999999999788999999999999999999
Q ss_pred CCcEEEEe--------cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeee----EEeecccCCCCCCeeEEE
Q 005352 426 SCHVVDWV--------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE----ICVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 426 ~~~~~~~~--------~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~----~~~~~~~~~~~~~i~~l~ 493 (701)
+++.+... .|...|++++|+|++++|++|+.||.|++||+++........ .........|...|.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 317 (393)
T 1erj_A 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 317 (393)
T ss_dssp TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEE
T ss_pred CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEE
Confidence 98876443 577899999999999999999999999999998654321110 001111234667899999
Q ss_pred EecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEec------CCCEEEEEeCCCcEEEEeCCCC
Q 005352 494 FLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTS------DGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 494 ~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~------dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
|+| ++.+|++++.|+.|++||..+.........|...|.+++|++ ++++|+||+.||.|+||++...
T Consensus 318 ~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 318 TTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999 788999999999999999987776666666999999999986 6889999999999999998654
No 39
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=301.96 Aligned_cols=294 Identities=18% Similarity=0.197 Sum_probs=218.2
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+++|.++|++++|+|+ +||+|+.|++|++||+..+..
T Consensus 8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--------------------------------------- 46 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--------------------------------------- 46 (330)
T ss_dssp EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------------------------------------
T ss_pred eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------------------------------------
Confidence 567899999999999987 999999999999999876421
Q ss_pred eeecCCccEEEcCCccccccCCCeEEE-cC-CccCeEEEEEecCC-eEEEEECCCcEEEEECCC-------Ceeeeeec-
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEF-HG-HSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN-------DHCLRVFP- 392 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~-------~~~~~~~~- 392 (701)
.....+ .+ |...|.+++|+|++ +|++++.|++|+|||+.. .+++..+.
T Consensus 47 ---------------------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 105 (330)
T 2hes_X 47 ---------------------TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG 105 (330)
T ss_dssp ---------------------EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-
T ss_pred ---------------------EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC
Confidence 111223 23 99999999999999 999999999999999853 34555554
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC----cEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC----HVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~----~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~ 467 (701)
|...|++++|+| ++++|++|+.|++|++||++.. +.+ .+..|...|++++|+|++++|++++.|+.|++||+.+
T Consensus 106 h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~ 184 (330)
T 2hes_X 106 HENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD 184 (330)
T ss_dssp ---CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET
T ss_pred CCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 999999999999 9999999999999999999532 333 4556889999999999999999999999999999876
Q ss_pred CeeeeeeeEEeecccCCCCCCeeEEEEecCC-CCEEEEEECCCcEEEEeCCcc--------ceeeecc-cCCCCeEEEEE
Q 005352 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQD-SSKVMVSCADSQVRILQGPNV--------IGKYKGL-RRSGNQLSACF 537 (701)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~-~~~l~~~s~dg~I~iwd~~~~--------~~~~~~~-~~~~~v~~l~~ 537 (701)
...... .....|...|.+++|+|+. +..|++++.|++|++||+... ....... .|...|.+++|
T Consensus 185 ~~~~~~------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 258 (330)
T 2hes_X 185 DDWECV------AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW 258 (330)
T ss_dssp TEEEEE------EEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEE
T ss_pred CCeeEE------EEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEE
Confidence 532211 1234567889999999943 568999999999999998643 1122222 27889999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCC-CCCccccC
Q 005352 538 TSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDD-SPENLAFA 616 (701)
Q Consensus 538 s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~s 616 (701)
++++ +|++++.||.|+||+..+++. +..... .. .+.. .+..++|+
T Consensus 259 s~~~-~l~s~~~dg~v~iw~~~~~~~------~~~~~~------------~~---------------~h~~~~v~~v~~~ 304 (330)
T 2hes_X 259 GFNG-LIASVGADGVLAVYEEVDGEW------KVFAKR------------AL---------------CHGVYEINVVKWL 304 (330)
T ss_dssp CTTS-CEEEEETTSCEEEEEEETTEE------EEEEEE------------SC---------------TTTTSCEEEEEEC
T ss_pred cCCC-EEEEEeCCCEEEEEEcCCCce------EEEecc------------cc---------------ccccceEEEEEEe
Confidence 9765 899999999999999765420 000000 00 0011 34556677
Q ss_pred CCccccCccccccCCCCcccCCCCcc
Q 005352 617 PARFSLGQEYVFESFPKGCATWPEEK 642 (701)
Q Consensus 617 p~~~~~~~~~~~~s~d~~~~~W~~~~ 642 (701)
|. ..+..+++++.|+.+++|+.++
T Consensus 305 ~~--~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 305 EL--NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -------CCEEEEETTSEEEEEEC--
T ss_pred cC--CCceEEEEecCCCcEEEEEecc
Confidence 72 0156788999999999998654
No 40
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=298.99 Aligned_cols=298 Identities=20% Similarity=0.266 Sum_probs=240.3
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
..+.+|.+.|++|+|+|++++|++|+.||.|++||+.+++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------------------------------------- 65 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE---------------------------------------- 65 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC----------------------------------------
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch----------------------------------------
Confidence 4678899999999999999999999999999999987764
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHF 402 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f 402 (701)
.+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+.+...|.+++|
T Consensus 66 ----------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 123 (369)
T 3zwl_B 66 ----------------------RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEF 123 (369)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred ----------------------hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEE
Confidence 345567899999999999998 999999999999999999999999999999999999
Q ss_pred eeCCCCEEEEEEcC-----CcEEEEeCCCCcE------------EEEecCCC--cEEEEEEeeCCCeEEEEecCCcEEEE
Q 005352 403 NPVDDNYFISGSID-----GKVRIWAVLSCHV------------VDWVDIRQ--IVTAVCYRPDGQGGIVGSMMGDCRFY 463 (701)
Q Consensus 403 ~p~~~~~l~sgs~d-----g~v~iwd~~~~~~------------~~~~~~~~--~i~~i~~sp~g~~l~~gs~dg~v~i~ 463 (701)
+| ++++|++++.+ +.|++||+..... .....+.. .+.+++|+|+++.|++++.+|.|++|
T Consensus 124 ~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 202 (369)
T 3zwl_B 124 SP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202 (369)
T ss_dssp CT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred cc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEE
Confidence 99 99999999998 9999999976531 22334444 89999999999999999999999999
Q ss_pred ECCC-CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCC
Q 005352 464 NVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK 542 (701)
Q Consensus 464 d~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~ 542 (701)
|+++ ...... ...+...|.+++|+| ++.+|++++.|+.|++||+.+........ +...+..++|+|+++
T Consensus 203 d~~~~~~~~~~--------~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 272 (369)
T 3zwl_B 203 DVSNNYEYVDS--------IDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKE 272 (369)
T ss_dssp ETTTTTEEEEE--------EECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSS
T ss_pred ECCCCcEeEEE--------EecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCc
Confidence 9998 333221 223567899999999 78999999999999999998765544433 778899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCcccc
Q 005352 543 HIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSL 622 (701)
Q Consensus 543 ~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~ 622 (701)
++++++.++.+.+|......
T Consensus 273 ~l~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 292 (369)
T 3zwl_B 273 FIILGGGQEAKDVTTTSANE------------------------------------------------------------ 292 (369)
T ss_dssp EEEEEECCC-----------------------------------------------------------------------
T ss_pred eEEEeecCCCceEEEEecCC------------------------------------------------------------
Confidence 99999999877776643322
Q ss_pred CccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 623 GQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 623 ~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
....+++|+......+..+.+| ...+.+++++++ +.+|+||+.||.|++|+.
T Consensus 293 --------~~~~i~~~d~~~~~~~~~~~~~-----------~~~v~~~~~s~~-~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 293 --------GKFEARFYHKIFEEEIGRVQGH-----------FGPLNTVAISPQ-GTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp ----------CEEEEEETTTCCEEEEEECC-----------SSCEEEEEECTT-SSEEEEEETTSEEEEEEE
T ss_pred --------CcceeEEEecCCCcchhheecc-----------cCcEEEEEECCC-CCEEEEEcCCCeEEEEEC
Confidence 1123455665555555555444 356778888888 999999999999999984
No 41
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-33 Score=291.18 Aligned_cols=251 Identities=18% Similarity=0.269 Sum_probs=207.3
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.+.+|.+.|++++|+|+|++||||+.|++|+|||+.....
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---------------------------------------- 43 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---------------------------------------- 43 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB----------------------------------------
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc----------------------------------------
Confidence 4678999999999999999999999999999999864310
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC--C-eEEEEECCCcEEEEECCCCe--eeeeec-CCCCeE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYVT 398 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~~--~~~~~~-h~~~V~ 398 (701)
+.+..+.+|.+.|.+++|+++ + +|++++.|++|++||+.+++ .+..+. |...|.
T Consensus 44 --------------------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~ 103 (297)
T 2pm7_B 44 --------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN 103 (297)
T ss_dssp --------------------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEE
T ss_pred --------------------EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCcee
Confidence 345678899999999999863 5 99999999999999998874 444444 889999
Q ss_pred EEEEeeCC--CCEEEEEEcCCcEEEEeCCCCc---EEEEecCCCcEEEEEEeeC-------------CCeEEEEecCCcE
Q 005352 399 CVHFNPVD--DNYFISGSIDGKVRIWAVLSCH---VVDWVDIRQIVTAVCYRPD-------------GQGGIVGSMMGDC 460 (701)
Q Consensus 399 ~l~f~p~~--~~~l~sgs~dg~v~iwd~~~~~---~~~~~~~~~~i~~i~~sp~-------------g~~l~~gs~dg~v 460 (701)
+++|+| + +.+|++++.|+.|++||++++. ......|...|.+++|+|+ +++|++|+.|+.|
T Consensus 104 ~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v 182 (297)
T 2pm7_B 104 SVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182 (297)
T ss_dssp EEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCE
T ss_pred EEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcE
Confidence 999999 5 7899999999999999998763 3355678899999999997 5799999999999
Q ss_pred EEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC--CCEEEEEECCCcEEEEeCCccc-----eeeecccCCCCeE
Q 005352 461 RFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPNVI-----GKYKGLRRSGNQL 533 (701)
Q Consensus 461 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~--~~~l~~~s~dg~I~iwd~~~~~-----~~~~~~~~~~~v~ 533 (701)
++||+++....... ......|...|.+++|+|+. +.+|++++.|++|+|||..... ..+....|...|.
T Consensus 183 ~lwd~~~~~~~~~~----~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~ 258 (297)
T 2pm7_B 183 KIWKYNSDAQTYVL----ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLW 258 (297)
T ss_dssp EEEEEETTTTEEEE----EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEE
T ss_pred EEEEEcCCCceEEE----EEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEE
Confidence 99999875422111 11234577889999999953 5899999999999999987532 1222234678899
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 534 SACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 534 ~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
+++|+|+|++|++++.|+.|+||+...
T Consensus 259 ~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 259 RASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 999999999999999999999999763
No 42
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.5e-33 Score=324.13 Aligned_cols=286 Identities=20% Similarity=0.342 Sum_probs=229.8
Q ss_pred eeecccCcceeeecCc---cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcE
Q 005352 198 CVVDKQGEGERVRLNE---EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274 (701)
Q Consensus 198 ~~~~~~~~~~~~~~~~---~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (701)
.+..|.+.+.++.+.. +.+++|+.|+.|+||++........ ...+.+.+|...|.+++|+|+|++|+||+.||+|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--cccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 3456888888887653 3578899999999999865432211 1224678999999999999999999999999999
Q ss_pred EEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc
Q 005352 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (701)
Q Consensus 275 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 354 (701)
+|||+.++.. +..+.+|.
T Consensus 455 ~vwd~~~~~~--------------------------------------------------------------~~~~~~h~ 472 (694)
T 3dm0_A 455 RLWDLAAGVS--------------------------------------------------------------TRRFVGHT 472 (694)
T ss_dssp EEEETTTTEE--------------------------------------------------------------EEEEECCS
T ss_pred EEEECCCCcc--------------------------------------------------------------eeEEeCCC
Confidence 9999987642 34567899
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee----cCCCCeEEEEEeeCCC--CEEEEEEcCCcEEEEeCCCC
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF----PHSNYVTCVHFNPVDD--NYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~----~h~~~V~~l~f~p~~~--~~l~sgs~dg~v~iwd~~~~ 427 (701)
..|.+++|+|++ +|++++.|++|++||+......... .|...|.+++|+| ++ ..|++++.|+.|++||++++
T Consensus 473 ~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~ 551 (694)
T 3dm0_A 473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNC 551 (694)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTTC
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCCC
Confidence 999999999999 9999999999999998765544332 3888999999999 54 68999999999999999998
Q ss_pred cEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE
Q 005352 428 HVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 428 ~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s 506 (701)
+... ...|...|++++|+|++++|++|+.||.|++||+.+++..... .+...|.+++|+| ++.++++ +
T Consensus 552 ~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~---------~~~~~v~~~~~sp-~~~~l~~-~ 620 (694)
T 3dm0_A 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---------EANSVIHALCFSP-NRYWLCA-A 620 (694)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC---------BCSSCEEEEEECS-SSSEEEE-E
T ss_pred cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe---------cCCCcEEEEEEcC-CCcEEEE-E
Confidence 8774 4568899999999999999999999999999999988754321 1235799999999 5665555 4
Q ss_pred CCCcEEEEeCCccceeeecc-------------------cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 507 ADSQVRILQGPNVIGKYKGL-------------------RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 507 ~dg~I~iwd~~~~~~~~~~~-------------------~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
.++.|+|||+.+........ .+...+++++|+|+|++|++|+.||.|+||++.
T Consensus 621 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 621 TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 56679999997644322211 112247899999999999999999999999985
No 43
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.2e-33 Score=292.91 Aligned_cols=250 Identities=21% Similarity=0.336 Sum_probs=209.5
Q ss_pred ceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+|+||++.|++|+|+|+ +++|||||.||+|+|||+.+.+...
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~------------------------------------ 75 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY------------------------------------ 75 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS------------------------------------
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc------------------------------------
Confidence 468999999999999997 6899999999999999997654110
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l 400 (701)
..+...+.+|...|.+++|+|++ +|++++.|+.|++|+........... +...+..+
T Consensus 76 ---------------------~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~ 134 (340)
T 4aow_A 76 ---------------------GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV 134 (340)
T ss_dssp ---------------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred ---------------------ceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEE
Confidence 02456778999999999999999 99999999999999999988777765 77788899
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--EEecCCCcEEEEEEeeCC--CeEEEEecCCcEEEEECCCCeeeeeeeE
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDIRQIVTAVCYRPDG--QGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~~~~~i~~i~~sp~g--~~l~~gs~dg~v~i~d~~~~~~~~~~~~ 476 (701)
.+++ ++++|++++.|+.+++||+...... ....+...+..++|++++ ..+++++.|+.|++||+++.+....
T Consensus 135 ~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~--- 210 (340)
T 4aow_A 135 AFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN--- 210 (340)
T ss_dssp EECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE---
T ss_pred EEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE---
Confidence 9998 8999999999999999999876554 334577889999998865 5678899999999999998875432
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
...|...|++++|+| ++.+|++++.|+.|++||+.+........ +...+.+++|+|++.++ +++.|+.|++|
T Consensus 211 -----~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iw 282 (340)
T 4aow_A 211 -----HIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLD-GGDIINALCFSPNRYWL-CAATGPSIKIW 282 (340)
T ss_dssp -----ECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEE-CSSCEEEEEECSSSSEE-EEEETTEEEEE
T ss_pred -----ecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeec-CCceEEeeecCCCCcee-eccCCCEEEEE
Confidence 234667899999999 78999999999999999998766555443 55789999999987654 55679999999
Q ss_pred eCCCCC
Q 005352 557 NCIGHE 562 (701)
Q Consensus 557 d~~~~~ 562 (701)
|++++.
T Consensus 283 d~~~~~ 288 (340)
T 4aow_A 283 DLEGKI 288 (340)
T ss_dssp ETTTTE
T ss_pred ECCCCe
Confidence 987654
No 44
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.4e-33 Score=299.62 Aligned_cols=252 Identities=15% Similarity=0.240 Sum_probs=209.3
Q ss_pred eccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEee
Q 005352 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (701)
+..|.++|++++|+|++++||+|+.|+.|++||+.+++.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~----------------------------------------- 42 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW----------------------------------------- 42 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------------------------------------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------------------------------------
Confidence 456999999999999999999999999999999987641
Q ss_pred ecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee---cCCCCeEEEE
Q 005352 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF---PHSNYVTCVH 401 (701)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~---~h~~~V~~l~ 401 (701)
+.+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++....+ .|...|.+++
T Consensus 43 -------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 103 (372)
T 1k8k_C 43 -------------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 103 (372)
T ss_dssp -------------------EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEE
T ss_pred -------------------EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEE
Confidence 1345667899999999999999 9999999999999999998755543 4889999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcE---E-EE-ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee---
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHV---V-DW-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD--- 473 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~---~-~~-~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~--- 473 (701)
|+| ++++|++++.|+.|++||+..+.. . .. ..|...|++++|+|++++|++++.||.|++||++.......
T Consensus 104 ~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 104 WAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp ECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred ECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 999 999999999999999999988762 2 22 35688999999999999999999999999999752210000
Q ss_pred -------eeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEE
Q 005352 474 -------AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVS 546 (701)
Q Consensus 474 -------~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s 546 (701)
...........+...|.+++|+| ++.+|++++.|+.|++||+.+.........|...|.+++|+|++.+|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 261 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA 261 (372)
T ss_dssp BTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred cccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE
Confidence 00001111235667899999999 7889999999999999999877666666668889999999999998888
Q ss_pred EeCCCcEEEEeCCC
Q 005352 547 AGEDSNVYMWNCIG 560 (701)
Q Consensus 547 gs~Dg~I~iWd~~~ 560 (701)
| .|+.|++|++.+
T Consensus 262 ~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 262 G-HDCFPVLFTYDS 274 (372)
T ss_dssp E-TTSSCEEEEEET
T ss_pred E-eCCeEEEEEccC
Confidence 8 899999999987
No 45
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.9e-33 Score=292.22 Aligned_cols=289 Identities=19% Similarity=0.364 Sum_probs=232.4
Q ss_pred eecccCcceeeecCc---cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEE
Q 005352 199 VVDKQGEGERVRLNE---EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR 275 (701)
Q Consensus 199 ~~~~~~~~~~~~~~~---~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 275 (701)
+..|.+.+.++++++ +.+++|+.|++|+||++....... ....+.+++|...|.+++|+|+|++|++|+.|+.|+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~--~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~ 111 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY--GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc--ceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccce
Confidence 346888888887763 457789999999999987543322 223356889999999999999999999999999999
Q ss_pred EEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCcc
Q 005352 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (701)
Q Consensus 276 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 355 (701)
+|+....... .....+..
T Consensus 112 ~~~~~~~~~~--------------------------------------------------------------~~~~~~~~ 129 (340)
T 4aow_A 112 LWDLTTGTTT--------------------------------------------------------------RRFVGHTK 129 (340)
T ss_dssp EEETTTTEEE--------------------------------------------------------------EEEECCSS
T ss_pred EEeeccccee--------------------------------------------------------------eeecCCCC
Confidence 9998776422 22345667
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee--cCCCCeEEEEEeeCC-CCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPVD-DNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~~-~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
.+..+.+++++ +|++++.|+.+++||+......... .|...+.+++|++.. ..++++++.|+.|++||+++++.+.
T Consensus 130 ~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~ 209 (340)
T 4aow_A 130 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 209 (340)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred ceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee
Confidence 78888999988 9999999999999999877654433 388999999998732 3578899999999999999998774
Q ss_pred -EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc
Q 005352 432 -WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (701)
Q Consensus 432 -~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~ 510 (701)
...|...|++++|+|++++|++|+.||.|++||+++.+...... +...+..+.|+| + ..+++++.|+.
T Consensus 210 ~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~---------~~~~v~~~~~~~-~-~~~~~~~~d~~ 278 (340)
T 4aow_A 210 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD---------GGDIINALCFSP-N-RYWLCAATGPS 278 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE---------CSSCEEEEEECS-S-SSEEEEEETTE
T ss_pred EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec---------CCceEEeeecCC-C-CceeeccCCCE
Confidence 45688999999999999999999999999999999877543211 235799999998 3 45667788999
Q ss_pred EEEEeCCccceeee---------cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 511 VRILQGPNVIGKYK---------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 511 I~iwd~~~~~~~~~---------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|++||+........ ...|...|++++|+|+|++|++|+.||.|+|||+.+|.
T Consensus 279 i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 279 IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999875433222 23478899999999999999999999999999999875
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.7e-34 Score=307.81 Aligned_cols=330 Identities=15% Similarity=0.140 Sum_probs=252.7
Q ss_pred ceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeee
Q 005352 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (701)
Q Consensus 206 ~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~ 285 (701)
..++++++..+++++.|+.|++|+....... ..+..| ..+....|+|++++||+|+.||.|++||+.+++.
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~- 131 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-------KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ- 131 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETT-------TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE-
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEeccccee-------eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce-
Confidence 3567788889999999999999997643321 223445 4555667899999999999999999999876542
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
...+.+|...|.+++|+|+
T Consensus 132 -------------------------------------------------------------~~~~~~h~~~v~~~~~~~~ 150 (420)
T 3vl1_A 132 -------------------------------------------------------------REIDQAHVSEITKLKFFPS 150 (420)
T ss_dssp -------------------------------------------------------------EEETTSSSSCEEEEEECTT
T ss_pred -------------------------------------------------------------eeecccccCccEEEEECCC
Confidence 2334679999999999999
Q ss_pred C-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec----CCCcE
Q 005352 366 N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD----IRQIV 439 (701)
Q Consensus 366 ~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~----~~~~i 439 (701)
+ +|++++.|++|++||+.+++++..+. |...|++++|+| ++++|++++.|+.|++||+++++.+..+. +...+
T Consensus 151 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence 9 99999999999999999999888886 999999999999 99999999999999999999998776553 33445
Q ss_pred EEEE---------------------EeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC
Q 005352 440 TAVC---------------------YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (701)
Q Consensus 440 ~~i~---------------------~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~ 498 (701)
.+++ |+|++++|++|+.||.|++||+++...... ....+...|.+++|+|++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~~v~~~~~~~~~ 302 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ-------LPSKFTCSCNSLTVDGNN 302 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE-------ECCTTSSCEEEEEECSSC
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE-------cccccCCCceeEEEeCCC
Confidence 5554 578899999999999999999998764332 123466789999999954
Q ss_pred CCEEEEEECCCcEEEEeCCccce-eeeccc-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccc
Q 005352 499 SSKVMVSCADSQVRILQGPNVIG-KYKGLR-RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE 576 (701)
Q Consensus 499 ~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~-~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 576 (701)
..+|++++.|+.|++||+.+... ...... +...|.++. .+++++|++++.||.|++|++..+..+.....
T Consensus 303 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~------- 374 (420)
T 3vl1_A 303 ANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIE------- 374 (420)
T ss_dssp TTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEEC-------
T ss_pred CCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCcccee-------
Confidence 44999999999999999986543 222222 566777775 46888999999999999999988653221100
Q ss_pred cccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCcc
Q 005352 577 RFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEK 642 (701)
Q Consensus 577 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~ 642 (701)
+. ...........+..++|+|++...+ .+++.+.++.+.+|+.+.
T Consensus 375 -~~-------------------~~~~~~~~~~~v~~~~~s~~~~~~g-~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 375 -FE-------------------TPTFLVSNDDAVSQFCYVSDDESNG-EVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp -TT-------------------SCEEECCSSCCCCEEEEECCSSSSC-EEEEEETTTEEEEEESCC
T ss_pred -cc-------------------CccEEccCCcceEEEEEccCCCCcc-eEEEEcCCceEEEEeccC
Confidence 00 1111123345677889999844333 455667888899998754
No 47
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-32 Score=287.53 Aligned_cols=283 Identities=17% Similarity=0.262 Sum_probs=237.8
Q ss_pred cccCcceeeec--CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|...+.++.+ ++..+++++ ++.|+||++....... ........+|...|.+++|+|++++|++++.||.|++||
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS--PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS--CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee--eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 45555655544 455666677 9999999986543211 111111227999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+++. .....+.+|...|.
T Consensus 126 ~~~~~~------------------------------------------------------------~~~~~~~~~~~~i~ 145 (337)
T 1gxr_A 126 LAAPTP------------------------------------------------------------RIKAELTSSAPACY 145 (337)
T ss_dssp CCCC--------------------------------------------------------------EEEEEEECSSSCEE
T ss_pred CCCCCc------------------------------------------------------------ceeeecccCCCceE
Confidence 977541 12345667899999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR 436 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 436 (701)
+++|+|++ +|++++.|+.|++||+.+++.+..+. |...|.+++|+| ++++|++++.||.|++||+++++.+....+.
T Consensus 146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 224 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeecCC
Confidence 99999998 99999999999999999999988887 889999999999 9999999999999999999999998888889
Q ss_pred CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
..+.+++|+|+++.+++++.++.|++||+.+..... ...+...|.+++|+| ++.+|++++.|+.|++||+
T Consensus 225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~---------~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---------LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---------ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE---------EcCCccceeEEEECC-CCCEEEEecCCCcEEEEEC
Confidence 999999999999999999999999999999875421 234567899999999 7899999999999999999
Q ss_pred CccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 517 PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.+...... ..+...+.+++|+|++++|++++.||.|++|++
T Consensus 295 ~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 295 PYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 87665543 347889999999999999999999999999996
No 48
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.8e-33 Score=300.34 Aligned_cols=302 Identities=13% Similarity=0.152 Sum_probs=240.9
Q ss_pred ecccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC----C---CEEEEEeCCC
Q 005352 200 VDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD----G---QYLASAGDDG 272 (701)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g---~~Lasgs~Dg 272 (701)
..|.+.+.++.+++..+++++.|+.|+||+....... ........+.+|...|++++|+|+ + ++|++++.||
T Consensus 13 ~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 13 KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNE-NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp SCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTC-CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccc-cCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 3577888999999988999999999999998754311 112223467789999999999999 9 9999999999
Q ss_pred cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcC
Q 005352 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (701)
Q Consensus 273 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (701)
.|++|++.+++.... ..+..+.+
T Consensus 92 ~i~iw~~~~~~~~~~---------------------------------------------------------~~~~~~~~ 114 (397)
T 1sq9_A 92 DLLFYRITREDETKK---------------------------------------------------------VIFEKLDL 114 (397)
T ss_dssp CEEEEEEEECTTTCC---------------------------------------------------------EEEEEECC
T ss_pred CEEEEEccCCccccc---------------------------------------------------------ccceeecc
Confidence 999999987642000 11345566
Q ss_pred C-----ccCeEEEEEe----cCC-e-EEEEECCCcEEEEECCC------Ceeee-----eec--------CCCCeEEEEE
Q 005352 353 H-----SGEILDLSWS----KNN-Y-LLSASIDKTVRLWRVGN------DHCLR-----VFP--------HSNYVTCVHF 402 (701)
Q Consensus 353 h-----~~~I~~l~~s----~~~-~-l~s~s~dg~I~iWd~~~------~~~~~-----~~~--------h~~~V~~l~f 402 (701)
| ...|.+++|+ |++ + |++++.||.|++||+.+ ++.+. .+. |...|.+++|
T Consensus 115 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 194 (397)
T 1sq9_A 115 LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 194 (397)
T ss_dssp SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE
T ss_pred cccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEE
Confidence 7 5899999999 888 8 99999999999999988 65554 442 7889999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec----C---CCcEEEEEEeeCCCeEEEEecC---CcEEEEECCCCeeee
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD----I---RQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDNHLEL 472 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~----~---~~~i~~i~~sp~g~~l~~gs~d---g~v~i~d~~~~~~~~ 472 (701)
+| ++ +|++++.||.|++||+++++.+..+. | ...|.+++|+|++++|++++.| |.|++||+++.+...
T Consensus 195 ~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~ 272 (397)
T 1sq9_A 195 SE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 272 (397)
T ss_dssp CT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred CC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccc
Confidence 99 88 99999999999999999988775544 5 8899999999999999999999 999999999876543
Q ss_pred eeeEEee-----cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc------cC-------------
Q 005352 473 DAEICVH-----SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL------RR------------- 528 (701)
Q Consensus 473 ~~~~~~~-----~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~------~~------------- 528 (701)
....... .....+...|.+++|+| ++.+|++++.|+.|++||+.+........ .|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 351 (397)
T 1sq9_A 273 SLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDS 351 (397)
T ss_dssp EECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred eeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccccc
Confidence 2211000 00011567899999999 78999999999999999998765555444 45
Q ss_pred --CCCeEEEEEecCC----------CEEEEEeCCCcEEEEeCCCCC
Q 005352 529 --SGNQLSACFTSDG----------KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 529 --~~~v~~l~~s~dg----------~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
...|.+++|+|++ ++|++++.||.|++|++.+++
T Consensus 352 ~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 352 LAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8999999999998 799999999999999998763
No 49
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.5e-34 Score=297.94 Aligned_cols=318 Identities=15% Similarity=0.160 Sum_probs=254.6
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
|.++|.+++|+|||++|+++..++.+.+|......
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 42 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA--------------------------------------------- 42 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE---------------------------------------------
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc---------------------------------------------
Confidence 56789999999999999998877766555332211
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee------cCCCCeEEEE
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF------PHSNYVTCVH 401 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~------~h~~~V~~l~ 401 (701)
. .....+|...|.+++|+|++ +|++++ ||.|++||+.++.....+ .|...|.+++
T Consensus 43 ----------------~-~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~ 104 (337)
T 1gxr_A 43 ----------------R-QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104 (337)
T ss_dssp ----------------E-EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEE
T ss_pred ----------------c-cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEE
Confidence 1 12234799999999999999 888887 999999999876533222 4889999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCc--EE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEe
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCH--VV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~--~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~ 478 (701)
|+| ++++|++++.|+.|++||+.+++ .. ....+...+.+++|+|+++.+++++.+|.|++||+++.+....
T Consensus 105 ~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~----- 178 (337)
T 1gxr_A 105 LLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ----- 178 (337)
T ss_dssp ECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-----
T ss_pred EcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee-----
Confidence 999 99999999999999999999876 22 4556788899999999999999999999999999998765432
Q ss_pred ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
...+...|.+++|+| ++.++++++.|+.|++||+.+....... .+...+.+++|+|++++|++++.|+.|++|++
T Consensus 179 ---~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 179 ---FQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp ---ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ---eecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 233567899999999 7899999999999999999876544443 47788999999999999999999999999999
Q ss_pred CCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCC
Q 005352 559 IGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATW 638 (701)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W 638 (701)
.+++.. .+ ......+..++|+|+ +..+++++.++.+++|
T Consensus 254 ~~~~~~---------~~----------------------------~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~~~ 292 (337)
T 1gxr_A 254 NKPDKY---------QL----------------------------HLHESCVLSLKFAYC----GKWFVSTGKDNLLNAW 292 (337)
T ss_dssp TSSCEE---------EE----------------------------CCCSSCEEEEEECTT----SSEEEEEETTSEEEEE
T ss_pred CCCCeE---------EE----------------------------cCCccceeEEEECCC----CCEEEEecCCCcEEEE
Confidence 876410 00 011234566788886 6678899999999999
Q ss_pred CCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 639 PEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
+.+....+... .+ ...+.+++++++ +.+|++|+.||.|++|+.
T Consensus 293 ~~~~~~~~~~~-~~-----------~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 293 RTPYGASIFQS-KE-----------SSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ETTTCCEEEEE-EC-----------SSCEEEEEECTT-SCEEEEEETTSCEEEEEE
T ss_pred ECCCCeEEEEe-cC-----------CCcEEEEEECCC-CCEEEEecCCCeEEEEEE
Confidence 98877655332 12 346777888888 999999999999999985
No 50
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-34 Score=335.32 Aligned_cols=245 Identities=10% Similarity=0.121 Sum_probs=193.1
Q ss_pred eccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEee
Q 005352 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (701)
..+|.+.|++|+|+|++++||+|+.||.|+||+..+.+..
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~---------------------------------------- 52 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV---------------------------------------- 52 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE----------------------------------------
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE----------------------------------------
Confidence 4579999999999999999999999999999997654321
Q ss_pred ecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEee
Q 005352 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNP 404 (701)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p 404 (701)
....|...|.+++|+| + +|++++.|++|++||+.+++++..+.|...|++++|+|
T Consensus 53 -----------------------~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp 108 (902)
T 2oaj_A 53 -----------------------IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDA 108 (902)
T ss_dssp -----------------------EECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCT
T ss_pred -----------------------EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECC
Confidence 1123778999999999 6 89999999999999999999999999889999999999
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCcEEEE------------ecCCCcEEEEEEeeC-CCeEEEEecCCcEEEEECCCCeee
Q 005352 405 VDDNYFISGSIDGKVRIWAVLSCHVVDW------------VDIRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 405 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~------------~~~~~~i~~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
++++|++|+.||.|++||+.+++.... ..|...|++++|+|+ +..+++|+.||.| +||+++++..
T Consensus 109 -~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~ 186 (902)
T 2oaj_A 109 -SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIK 186 (902)
T ss_dssp -TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEE
T ss_pred -CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceE
Confidence 999999999999999999998876421 346789999999996 5789999999999 9999988754
Q ss_pred eeeeEEee----------cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeee-------cc--------
Q 005352 472 LDAEICVH----------SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK-------GL-------- 526 (701)
Q Consensus 472 ~~~~~~~~----------~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~-------~~-------- 526 (701)
........ .....|...|++++|+| ++.+|++++.|+.|++||+++...... .+
T Consensus 187 ~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~ 265 (902)
T 2oaj_A 187 QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIR 265 (902)
T ss_dssp EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCC
T ss_pred EEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCC
Confidence 33211100 00122346799999999 689999999999999999976543221 11
Q ss_pred ---cCCCCeEEEEEec----CC-CEEEEEeCC-----CcEEEEe
Q 005352 527 ---RRSGNQLSACFTS----DG-KHIVSAGED-----SNVYMWN 557 (701)
Q Consensus 527 ---~~~~~v~~l~~s~----dg-~~l~sgs~D-----g~I~iWd 557 (701)
.+...|.+++|++ ++ .+|++|+.| ..+.+|+
T Consensus 266 ~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~ 309 (902)
T 2oaj_A 266 DSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID 309 (902)
T ss_dssp CCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred CCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence 1344789999964 33 456666554 2566665
No 51
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.4e-34 Score=303.99 Aligned_cols=251 Identities=12% Similarity=0.115 Sum_probs=195.3
Q ss_pred eccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEee
Q 005352 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (701)
++.|.++|++++|+|+|++||+|+.|+.|+|||+.++..
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------------------------- 45 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------------------------------------- 45 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----------------------------------------
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----------------------------------------
Confidence 445788999999999999999999999999999987621
Q ss_pred ecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe---eeee-ecCCCCeEEE
Q 005352 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH---CLRV-FPHSNYVTCV 400 (701)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~---~~~~-~~h~~~V~~l 400 (701)
+.+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++ .... ..|...|+++
T Consensus 46 -------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 106 (377)
T 3dwl_C 46 -------------------KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFV 106 (377)
T ss_dssp -------------------EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEE
T ss_pred -------------------EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEE
Confidence 1123456799999999999998 99999999999999999887 3333 3599999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcE----EEEec-CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee--
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHV----VDWVD-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD-- 473 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~----~~~~~-~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~-- 473 (701)
+|+| ++++|++++.|+.|++||+++++. ..+.. |...|++++|+|++++|++++.|+.|++||+........
T Consensus 107 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 107 RWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred EECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 9999 999999999999999999998862 34444 889999999999999999999999999999964331110
Q ss_pred --------eeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce----eeecccCCCCeEEEEEecCC
Q 005352 474 --------AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG----KYKGLRRSGNQLSACFTSDG 541 (701)
Q Consensus 474 --------~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~----~~~~~~~~~~v~~l~~s~dg 541 (701)
......... .|...|.+++|+| ++.+|++++.|+.|++||+.+... ......|...|.+++|+|++
T Consensus 186 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263 (377)
T ss_dssp SCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred ccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence 000111112 6778899999999 788999999999999999987654 44445588899999999999
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 005352 542 KHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 542 ~~l~sgs~Dg~I~iWd~~~ 560 (701)
++|++|+.|+.+ +|+...
T Consensus 264 ~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 264 AIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EEEEEESSSSEE-EECCCC
T ss_pred CEEEEEcCCcEE-EEEeCC
Confidence 999999866655 777654
No 52
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.4e-33 Score=327.14 Aligned_cols=283 Identities=19% Similarity=0.262 Sum_probs=234.7
Q ss_pred cccCcceee--ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERV--RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~--~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|.+.+.++ ++++..+++++.++.|+||++.... ..+.+.+|.++|++++|+|++++|++|+.||.|+|||
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-------eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 455666554 4556678889999999999975432 2245778999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+++ .+..+.+|...|+
T Consensus 84 ~~~~~--------------------------------------------------------------~~~~~~~~~~~v~ 101 (814)
T 3mkq_A 84 YNTGE--------------------------------------------------------------KVVDFEAHPDYIR 101 (814)
T ss_dssp TTTCC--------------------------------------------------------------EEEEEECCSSCEE
T ss_pred CCCCc--------------------------------------------------------------EEEEEecCCCCEE
Confidence 98764 3445678999999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCC-eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE-ec
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-VD 434 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~-~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~-~~ 434 (701)
+++|+|++ +|++++.||+|++||+.++ .....+. |...|.+++|+|.++++|++++.||.|++||+.++..... ..
T Consensus 102 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 181 (814)
T 3mkq_A 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181 (814)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC
T ss_pred EEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec
Confidence 99999999 9999999999999999987 5556655 8899999999996678999999999999999987765533 33
Q ss_pred -CCCcEEEEEEee--CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 435 -IRQIVTAVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 435 -~~~~i~~i~~sp--~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
+...+.+++|+| ++.++++++.+|.|++||+.+++.... ...+...|++++|+| ++.++++++.||.|
T Consensus 182 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--------~~~~~~~v~~~~~~~-~~~~l~~~~~dg~v 252 (814)
T 3mkq_A 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT--------LEGHMSNVSFAVFHP-TLPIIISGSEDGTL 252 (814)
T ss_dssp CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEE--------EECCSSCEEEEEECS-SSSEEEEEETTSCE
T ss_pred CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE--------EcCCCCCEEEEEEcC-CCCEEEEEeCCCeE
Confidence 348899999999 999999999999999999998765432 123567899999999 78899999999999
Q ss_pred EEEeCCccceeeecccCCCCeEEEEEecCCC--EEEEEeCCCcEEEEeCCCCC
Q 005352 512 RILQGPNVIGKYKGLRRSGNQLSACFTSDGK--HIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~--~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++||..+.........+...+.+++|+|++. +++++ .|+.+.+|++....
T Consensus 253 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 253 KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDE 304 (814)
T ss_dssp EEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCS
T ss_pred EEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCC
Confidence 9999987766666666888999999999987 45555 47779999987665
No 53
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-33 Score=302.42 Aligned_cols=343 Identities=14% Similarity=0.175 Sum_probs=255.4
Q ss_pred ccCcceeeecC--cc-ccccccccceEEEEEc----cCccc-----hhhhccc----CceeccCCCcEEEEEEccCCCEE
Q 005352 202 KQGEGERVRLN--EE-DAMFCSKVQRVKVYHC----KKRSK-----ELSALYK----GQEIQAHDGSILTMKFSPDGQYL 265 (701)
Q Consensus 202 ~~~~~~~~~~~--~~-~~~~~~~d~~v~vw~~----~~~~~-----~~~~~~~----~~~l~~H~~~I~~l~fspdg~~L 265 (701)
|.+.+.++.++ +. .+++++.|+.|+||++ ..... ....+.. .....+|.+.|++++|+|++++|
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 44566665554 45 7888999999999998 44321 1111100 01122378899999999999999
Q ss_pred EEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCC
Q 005352 266 ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345 (701)
Q Consensus 266 asgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (701)
++|+.||.|++|| .++ +
T Consensus 124 ~~~~~dg~i~i~~-~~~--------------------------------------------------------------~ 140 (425)
T 1r5m_A 124 VTGVENGELRLWN-KTG--------------------------------------------------------------A 140 (425)
T ss_dssp EEEETTSCEEEEE-TTS--------------------------------------------------------------C
T ss_pred EEEeCCCeEEEEe-CCC--------------------------------------------------------------C
Confidence 9999999999999 333 2
Q ss_pred CeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCC---------------eEEEEEeeCCCC
Q 005352 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNY---------------VTCVHFNPVDDN 408 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~---------------V~~l~f~p~~~~ 408 (701)
.+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+. +... +.+++|+| + .
T Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 218 (425)
T 1r5m_A 141 LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-D 218 (425)
T ss_dssp EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE-T-T
T ss_pred eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-C-C
Confidence 345567899999999999999 99999999999999999999988886 4444 89999998 5 5
Q ss_pred EEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCC
Q 005352 409 YFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 409 ~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 487 (701)
.+++++.+|.|++||+.+++.+. ...|...|.+++|+|++++|++++.||.|++||+.+.+.... ...+..
T Consensus 219 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--------~~~~~~ 290 (425)
T 1r5m_A 219 KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC--------FYGHSQ 290 (425)
T ss_dssp EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE--------ECCCSS
T ss_pred EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE--------ecCCCc
Confidence 68999999999999999887664 446888999999999999999999999999999987654321 234567
Q ss_pred CeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcc
Q 005352 488 RITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHD 567 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~ 567 (701)
.|.+++|+| ++ .+++++.|+.|++||+.+.........|...|.+++|+|++++|++++.||.|++|++.+++.+...
T Consensus 291 ~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 368 (425)
T 1r5m_A 291 SIVSASWVG-DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRS 368 (425)
T ss_dssp CEEEEEEET-TT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC----
T ss_pred cEEEEEECC-CC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceee
Confidence 899999999 45 9999999999999999877666666668899999999999999999999999999999876532111
Q ss_pred ccccccccccccCCceEEecCCCCCCCCCCCCCcccc--CCC-C-CCCccccCCCccccCccccccCCCCcccCCCCc
Q 005352 568 QAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHV--SDD-D-SPENLAFAPARFSLGQEYVFESFPKGCATWPEE 641 (701)
Q Consensus 568 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~-~-~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~ 641 (701)
.... .... +. ......... ... . .+..++|+|+ +..+++++.|+.+++|+.+
T Consensus 369 ~~~~-------~~~~-----~~------~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 369 LYGN-------RDGI-----LN------PLPIPLYASYQSSQDNDYIFDLSWNCA----GNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ----------------------------CEECCEEEEECCTTCCCCEEEEEECTT----SSEEEEEESSSCCEEEECC
T ss_pred eecc-------cccc-----cC------cccchhhhhhcCcccCCceEEEEccCC----CceEEEEecCceEEEEeec
Confidence 0000 0000 00 000001111 112 2 6778899997 6688899999999999864
No 54
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-32 Score=318.11 Aligned_cols=250 Identities=20% Similarity=0.323 Sum_probs=211.6
Q ss_pred ceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
..+++|.+.|++|+|+|+ +.+|+||+.|++|+||++.+.....
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~------------------------------------ 419 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY------------------------------------ 419 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS------------------------------------
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc------------------------------------
Confidence 357899999999999987 4799999999999999987642100
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l 400 (701)
......+.+|...|.+++|+|++ +|++|+.|++|+|||+.+++++..+. |...|.++
T Consensus 420 ---------------------~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~ 478 (694)
T 3dm0_A 420 ---------------------GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV 478 (694)
T ss_dssp ---------------------CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred ---------------------ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEE
Confidence 02245678999999999999999 99999999999999999999888876 99999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE----ecCCCcEEEEEEeeCC--CeEEEEecCCcEEEEECCCCeeeeee
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW----VDIRQIVTAVCYRPDG--QGGIVGSMMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~----~~~~~~i~~i~~sp~g--~~l~~gs~dg~v~i~d~~~~~~~~~~ 474 (701)
+|+| ++++|++++.|++|++||+........ ..|...|.+++|+|++ ..+++++.|+.|++||+++.+....
T Consensus 479 ~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~- 556 (694)
T 3dm0_A 479 AFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST- 556 (694)
T ss_dssp EECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE-
T ss_pred EEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE-
Confidence 9999 999999999999999999876654443 2477889999999987 5799999999999999998765321
Q ss_pred eEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 475 EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 475 ~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
...|...|++++|+| ++.+|++++.|+.|++||+.+........ +...|.+++|+|++.+|++++ |+.|+
T Consensus 557 -------~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~ 626 (694)
T 3dm0_A 557 -------LAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIK 626 (694)
T ss_dssp -------ECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEE
T ss_pred -------EcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEE
Confidence 345678899999999 78999999999999999998776655443 567899999999999888776 55699
Q ss_pred EEeCCCCC
Q 005352 555 MWNCIGHE 562 (701)
Q Consensus 555 iWd~~~~~ 562 (701)
|||+.++.
T Consensus 627 iwd~~~~~ 634 (694)
T 3dm0_A 627 IWDLESKS 634 (694)
T ss_dssp EEETTTTE
T ss_pred EEECCCCC
Confidence 99998765
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=313.33 Aligned_cols=289 Identities=11% Similarity=0.067 Sum_probs=203.5
Q ss_pred EEcCCccCeEEEEEecC------C-eEEEEECCCcEEEEECCCCeee-----------eee-cCCCCeEEEEEeeCCCCE
Q 005352 349 EFHGHSGEILDLSWSKN------N-YLLSASIDKTVRLWRVGNDHCL-----------RVF-PHSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 349 ~~~~h~~~I~~l~~s~~------~-~l~s~s~dg~I~iWd~~~~~~~-----------~~~-~h~~~V~~l~f~p~~~~~ 409 (701)
.+.+|.+.|.+++|+|+ + +|++++.||+|+|||+.++.+. ..+ .|...|++++|+| + ..
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~ 279 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TT 279 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-Ce
Confidence 35568889999999996 3 9999999999999999876422 233 3889999999997 4 58
Q ss_pred EEEEEcCCcEEEEeCCCCcE--EEEecCCCcEEEE--EEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 410 FISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAV--CYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~i~~i--~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
|++|+.||+|++||++++.. .....|...|++| +|+|++ ++|++|+.|++|++||+++.+...... .+.
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~--~~~---- 353 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV--SRF---- 353 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE--EEC----
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc--ccc----
Confidence 99999999999999987642 2456789999999 567887 899999999999999998765432111 111
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCC
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEP 564 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~ 564 (701)
....|.+++|+| ++..+++++.|++|++||++..........|...|++++|+|+|++|++|+.||+|++||+......
T Consensus 354 ~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~ 432 (524)
T 2j04_B 354 RGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLH 432 (524)
T ss_dssp SCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTT
T ss_pred ccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcc
Confidence 112478899999 6788999999999999999876654444559999999999999999999999999999997543210
Q ss_pred CccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCc-cC
Q 005352 565 AHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEE-KL 643 (701)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~-~~ 643 (701)
.+.... .|. ....+..++|+|++ ..+.. .....+|... +.
T Consensus 433 ---------~~~~~~-------~~~----------------~~~~v~~v~~sp~g----~~~~~---~~~~~~~~~~~~g 473 (524)
T 2j04_B 433 ---------GIKNSS-------ATQ----------------KSLRLWKWDYSIKD----DKYRI---DSSYEVYPLTVND 473 (524)
T ss_dssp ---------CC-------------C----------------CCCEEEECBCCSSS----CEEEE---CCCCCCCC-----
T ss_pred ---------ccccCc-------cce----------------eeeEEEEeccCCCC----CeEEc---cCCceecccccCC
Confidence 000000 000 00012345667763 21211 1233444332 23
Q ss_pred CCCccccccccchhhhhhhhhcccccccccCCC--ccEEEEecCCCeEeEEeecC
Q 005352 644 PALSQLSSASALHKSQYKFLKSSCLCTTSSHAW--GLVIVTAGWDGRIRSFLNYG 696 (701)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~ivTgg~DG~Irvw~~~g 696 (701)
..+..+.+| ...|++++++++. +..|++|+.||.||||+--|
T Consensus 474 ~~~~~l~gh-----------~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 474 VSKAKIDAH-----------GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp --------C-----------CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred cceeeecCC-----------CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 334455455 4688999999982 45999999999999998543
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.4e-33 Score=302.22 Aligned_cols=332 Identities=12% Similarity=0.074 Sum_probs=247.6
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
.+++++|+|+|++|++|+.||.|++||+.+++...
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~--------------------------------------------- 92 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK--------------------------------------------- 92 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---------------------------------------------
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceee---------------------------------------------
Confidence 45579999999999999999999999987754211
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCE
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~ 409 (701)
.+..| ..+....|++++ +|++++.|+.|++||+.++++...+ .|...|++++|+| ++++
T Consensus 93 -----------------~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~ 153 (420)
T 3vl1_A 93 -----------------MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEA 153 (420)
T ss_dssp -----------------TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECT-TSSE
T ss_pred -----------------EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECC-CCCE
Confidence 11223 334455678888 9999999999999999999998887 4999999999999 9999
Q ss_pred EEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCC-
Q 005352 410 FISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK- 487 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~- 487 (701)
|++++.|+.|++||+.+++.+ .+..|...|++++|+|+++.|++++.||.|++||+++++...... ....+..
T Consensus 154 l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~~~~~ 228 (420)
T 3vl1_A 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN-----RKENPHDG 228 (420)
T ss_dssp EEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-----BTTBTTCC
T ss_pred EEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee-----cCCCCCCC
Confidence 999999999999999988766 455689999999999999999999999999999999887543321 1112333
Q ss_pred --------------------CeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc-cCCCCeEEEEEecCCC-EEE
Q 005352 488 --------------------RITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL-RRSGNQLSACFTSDGK-HIV 545 (701)
Q Consensus 488 --------------------~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg~-~l~ 545 (701)
.+.+++|+| ++.+|++++.|+.|++||+.+........ .|...|.+++|+|++. +|+
T Consensus 229 v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 307 (420)
T 3vl1_A 229 VNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIY 307 (420)
T ss_dssp EEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEE
T ss_pred ccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEE
Confidence 344455566 68899999999999999998766555443 3778999999999999 999
Q ss_pred EEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcc
Q 005352 546 SAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQE 625 (701)
Q Consensus 546 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~ 625 (701)
+|+.||.|++||+.+++.+. ..+... ....+..+. .|+ +..
T Consensus 308 ~g~~dg~i~vwd~~~~~~~~-------~~~~~~---------------------------~~~~v~~~~-~~~----~~~ 348 (420)
T 3vl1_A 308 AGYENGMLAQWDLRSPECPV-------GEFLIN---------------------------EGTPINNVY-FAA----GAL 348 (420)
T ss_dssp EEETTSEEEEEETTCTTSCS-------EEEEES---------------------------TTSCEEEEE-EET----TEE
T ss_pred EEeCCCeEEEEEcCCCcCch-------hhhhcc---------------------------CCCCceEEE-eCC----CCE
Confidence 99999999999998875311 111000 111223332 232 567
Q ss_pred ccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCcc---EEEEecCCCeEeEEeec
Q 005352 626 YVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGL---VIVTAGWDGRIRSFLNY 695 (701)
Q Consensus 626 ~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~ivTgg~DG~Irvw~~~ 695 (701)
+++++.|+.+++|+.........+.... .......+.+.+.+++++++ +. .|+++|.+|.+++|..-
T Consensus 349 l~s~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~-~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 349 FVSSGFDTSIKLDIISDPESERPAIEFE--TPTFLVSNDDAVSQFCYVSD-DESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp EEEETTTEEEEEEEECCTTCCSCEECTT--SCEEECCSSCCCCEEEEECC-SSSSCEEEEEETTTEEEEEESC
T ss_pred EEEecCCccEEEEeccCCCCCccceecc--CccEEccCCcceEEEEEccC-CCCcceEEEEcCCceEEEEecc
Confidence 8899999999999977643222111000 00000112356777788888 77 67777788999999853
No 57
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.9e-33 Score=296.10 Aligned_cols=292 Identities=17% Similarity=0.276 Sum_probs=231.2
Q ss_pred cccCcceeeecCc------cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC----CCEEEEEeC
Q 005352 201 DKQGEGERVRLNE------EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD----GQYLASAGD 270 (701)
Q Consensus 201 ~~~~~~~~~~~~~------~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g~~Lasgs~ 270 (701)
.|...+.++.+++ ..+++++.++.|+||++..... ...........|.+.|++++|+|+ |++|++|+.
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE--IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC--EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE--EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4677888877763 3466677888999999864321 111111122247789999999999 679999999
Q ss_pred CCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEE
Q 005352 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (701)
Q Consensus 271 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (701)
||.|++||+.+++ .+..+
T Consensus 94 dg~i~v~d~~~~~--------------------------------------------------------------~~~~~ 111 (366)
T 3k26_A 94 RGIIRIINPITMQ--------------------------------------------------------------CIKHY 111 (366)
T ss_dssp TCEEEEECTTTCC--------------------------------------------------------------EEEEE
T ss_pred CCEEEEEEchhce--------------------------------------------------------------Eeeee
Confidence 9999999987763 34456
Q ss_pred cCCccCeEEEEEec-CC-eEEEEECCCcEEEEECCCCeeeeee----cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 351 HGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 351 ~~h~~~I~~l~~s~-~~-~l~s~s~dg~I~iWd~~~~~~~~~~----~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
.+|...|.+++|+| ++ +|++++.||.|++||+.+++.+..+ .|...|.+++|+| ++++|++++.||.|++||+
T Consensus 112 ~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~ 190 (366)
T 3k26_A 112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRI 190 (366)
T ss_dssp ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEEC
Confidence 78999999999999 77 9999999999999999999999887 4899999999999 9999999999999999999
Q ss_pred CCCcEEEEe-----------------------------cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeee-
Q 005352 425 LSCHVVDWV-----------------------------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA- 474 (701)
Q Consensus 425 ~~~~~~~~~-----------------------------~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~- 474 (701)
++++..... .|...|.+++|+ ++++++++.||.|++||+.+.......
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 268 (366)
T 3k26_A 191 NSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKI 268 (366)
T ss_dssp CSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGC
T ss_pred CCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccccc
Confidence 886543211 278899999998 779999999999999999876431100
Q ss_pred -----eEEeecccCCCCCCeeEEEEecCC--CCEEEEEECCCcEEEEeCCccce------eeecccCCCCeEEEEEecCC
Q 005352 475 -----EICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPNVIG------KYKGLRRSGNQLSACFTSDG 541 (701)
Q Consensus 475 -----~~~~~~~~~~~~~~i~~l~~~p~~--~~~l~~~s~dg~I~iwd~~~~~~------~~~~~~~~~~v~~l~~s~dg 541 (701)
..........+...|++++|+| + +.+|++++.|+.|++||+..... .+..+.+...|++++|+|++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 347 (366)
T 3k26_A 269 KPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS 347 (366)
T ss_dssp CTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred ccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC
Confidence 0111122334557799999999 5 89999999999999999986432 34444447999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 005352 542 KHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 542 ~~l~sgs~Dg~I~iWd~~~ 560 (701)
++|++++.||.|++||+.+
T Consensus 348 ~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 348 SILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SEEEEEETTSEEEEEEC--
T ss_pred CeEEEEeCCCEEEEEEecC
Confidence 9999999999999999853
No 58
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.1e-32 Score=300.46 Aligned_cols=318 Identities=18% Similarity=0.265 Sum_probs=252.2
Q ss_pred ceeccCCCcE-EEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSI-LTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I-~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
..+++|.+.| .++.| ++.+|++|+.||.|++||+.+++
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~--------------------------------------- 153 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK--------------------------------------- 153 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE---------------------------------------
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc---------------------------------------
Confidence 4678898885 66665 57799999999999999998764
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
.+..+.+|.+.|.+++|+++++|++|+.||+|++||+.+++++..+. |...|.+++
T Consensus 154 -----------------------~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~ 210 (464)
T 3v7d_B 154 -----------------------FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210 (464)
T ss_dssp -----------------------EEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred -----------------------EEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEE
Confidence 34456789999999999999999999999999999999999999887 999999999
Q ss_pred Eee-CCCCEEEEEEcCCcEEEEeCCCCcE------------------------EEEecCCCcEEEEEEeeCCCeEEEEec
Q 005352 402 FNP-VDDNYFISGSIDGKVRIWAVLSCHV------------------------VDWVDIRQIVTAVCYRPDGQGGIVGSM 456 (701)
Q Consensus 402 f~p-~~~~~l~sgs~dg~v~iwd~~~~~~------------------------~~~~~~~~~i~~i~~sp~g~~l~~gs~ 456 (701)
|++ .++++|++|+.||.|++||+.++.. .....|...+.++ +++++.+++|+.
T Consensus 211 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~ 288 (464)
T 3v7d_B 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY 288 (464)
T ss_dssp EEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEET
T ss_pred EecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeC
Confidence 995 2668999999999999999987652 2344566677766 678999999999
Q ss_pred CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEE
Q 005352 457 MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSAC 536 (701)
Q Consensus 457 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~ 536 (701)
||.|++||+.+.+.... ...|...|.+++|+| ++.++++++.|+.|++||+.+.........|...|.+++
T Consensus 289 d~~i~vwd~~~~~~~~~--------~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 359 (464)
T 3v7d_B 289 DNTLIVWDVAQMKCLYI--------LSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 359 (464)
T ss_dssp TSCEEEEETTTTEEEEE--------ECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCeEEEEECCCCcEEEE--------ecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEE
Confidence 99999999998765432 234668899999999 789999999999999999987776666667899999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccC
Q 005352 537 FTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFA 616 (701)
Q Consensus 537 ~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 616 (701)
|+ +.+|++++.||.|++||+.++.... .. ........++++
T Consensus 360 ~~--~~~l~s~s~dg~v~vwd~~~~~~~~--------~~-----------------------------~~~~~~~~~~~~ 400 (464)
T 3v7d_B 360 LS--DKFLVSAAADGSIRGWDANDYSRKF--------SY-----------------------------HHTNLSAITTFY 400 (464)
T ss_dssp EC--SSEEEEEETTSEEEEEETTTCCEEE--------EE-----------------------------ECTTCCCEEEEE
T ss_pred Ec--CCEEEEEeCCCcEEEEECCCCceee--------ee-----------------------------cCCCCccEEEEE
Confidence 97 5799999999999999998764210 00 011223445666
Q ss_pred CCccccCccccccCCCCcccCCCCccCCCCcc-ccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 617 PARFSLGQEYVFESFPKGCATWPEEKLPALSQ-LSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 617 p~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
|+ +..+++++ ++.+++|+.+....+.. +..+ ...+++++++ . ..++++++.||.+.+|-
T Consensus 401 ~~----~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~-----------~~~v~~v~~~-~-~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 401 VS----DNILVSGS-ENQFNIYNLRSGKLVHANILKD-----------ADQIWSVNFK-G-KTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EC----SSEEEEEE-TTEEEEEETTTCCEEESCTTTT-----------CSEEEEEEEE-T-TEEEEEEEETTEEEEEE
T ss_pred eC----CCEEEEec-CCeEEEEECCCCcEEehhhccC-----------CCcEEEEEec-C-CEEEEEEEeCCeEEEEE
Confidence 65 45566665 89999999998887665 2222 3567777775 3 67777777788766653
No 59
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-33 Score=302.82 Aligned_cols=252 Identities=14% Similarity=0.201 Sum_probs=201.0
Q ss_pred ee-ccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 245 EI-QAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 245 ~l-~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+ .+|.+.|++|+|+| ++++||+|+.||+|+|||+.+.+....+
T Consensus 57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~---------------------------------- 102 (437)
T 3gre_A 57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY---------------------------------- 102 (437)
T ss_dssp EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC----------------------------------
T ss_pred eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc----------------------------------
Confidence 45 78999999999999 9999999999999999998762200000
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECC---CCeeeeeec------
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG---NDHCLRVFP------ 392 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~---~~~~~~~~~------ 392 (701)
+....+ +|...|.+++|+|++ +|++++.||+|++||+. +++.+..+.
T Consensus 103 ----------------------~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 159 (437)
T 3gre_A 103 ----------------------SSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK 159 (437)
T ss_dssp ----------------------SCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ----------------------ceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence 112222 489999999999988 99999999999999995 554443332
Q ss_pred -------CCCCeEEEE--EeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---CCCcEEEEEEeeCCCeEEEEecCCcE
Q 005352 393 -------HSNYVTCVH--FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---IRQIVTAVCYRPDGQGGIVGSMMGDC 460 (701)
Q Consensus 393 -------h~~~V~~l~--f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---~~~~i~~i~~sp~g~~l~~gs~dg~v 460 (701)
+...+.++. ++| ++.+|++++.|+.|++||+++++.+..+. |...|++++|+|++++|++|+.||.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 238 (437)
T 3gre_A 160 INLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGII 238 (437)
T ss_dssp EEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCE
T ss_pred EEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeE
Confidence 566777877 456 78899999999999999999998775443 67899999999999999999999999
Q ss_pred EEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC---CCCEEEEEECCCcEEEEeCCcccee--eecc---------
Q 005352 461 RFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ---DSSKVMVSCADSQVRILQGPNVIGK--YKGL--------- 526 (701)
Q Consensus 461 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~---~~~~l~~~s~dg~I~iwd~~~~~~~--~~~~--------- 526 (701)
++||+++++..... ...+...|++++|+|. ++.+|++++.|+.|++||+.+.... +..+
T Consensus 239 ~iwd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 311 (437)
T 3gre_A 239 DIWDIRFNVLIRSW-------SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHF 311 (437)
T ss_dssp EEEETTTTEEEEEE-------BCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGG
T ss_pred EEEEcCCccEEEEE-------ecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcccee
Confidence 99999987654321 1234568999988763 5679999999999999999754322 2211
Q ss_pred ---------------cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 527 ---------------RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 527 ---------------~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.|...|.+++|+ ++++|++|+.||.|++||+.+++
T Consensus 312 ~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 312 LPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp SCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred cccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 156679999999 88999999999999999998876
No 60
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-32 Score=323.17 Aligned_cols=249 Identities=15% Similarity=0.279 Sum_probs=218.2
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~--------------------------------------- 47 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE--------------------------------------- 47 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------------------------
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce---------------------------------------
Confidence 56788999999999999999999999999999999987642
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
+..+.+|...|.+++|+|++ +|++++.||.|++||+.+++.+..+. |...|++++
T Consensus 48 -----------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~ 104 (814)
T 3mkq_A 48 -----------------------VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA 104 (814)
T ss_dssp -----------------------EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred -----------------------EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEE
Confidence 34556899999999999999 99999999999999999999988887 999999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCC-cEE-EEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEe
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSC-HVV-DWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~-~~~-~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~ 478 (701)
|+| ++.+|++++.||.|++||+.++ ... ....|...|++++|+| +++.|++++.||.|++||+.+.......
T Consensus 105 ~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~---- 179 (814)
T 3mkq_A 105 VHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---- 179 (814)
T ss_dssp ECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE----
T ss_pred EeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE----
Confidence 999 9999999999999999999886 443 4556889999999999 8899999999999999999876543221
Q ss_pred ecccCCCCCCeeEEEEecC-CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 479 HSKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~-~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
...+...+..++|+|. ++.++++++.|+.|++||..+.........|...|.+++|+|++++|++++.||.|++||
T Consensus 180 ---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd 256 (814)
T 3mkq_A 180 ---TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (814)
T ss_dssp ---ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred ---ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 1233467899999983 578999999999999999987666665556889999999999999999999999999999
Q ss_pred CCCCC
Q 005352 558 CIGHE 562 (701)
Q Consensus 558 ~~~~~ 562 (701)
+.+++
T Consensus 257 ~~~~~ 261 (814)
T 3mkq_A 257 SSTYK 261 (814)
T ss_dssp TTTCS
T ss_pred CCCCc
Confidence 98865
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.3e-32 Score=294.65 Aligned_cols=324 Identities=18% Similarity=0.294 Sum_probs=255.6
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+|.+.|.. +++++|++|++|+.||.|++||+.+++
T Consensus 112 ~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~---------------------------------------- 150 (445)
T 2ovr_B 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK---------------------------------------- 150 (445)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC----------------------------------------
T ss_pred EEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc----------------------------------------
Confidence 457789887533 355578999999999999999998764
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f 402 (701)
.+..+.+|...|.+++|+ .++|++++.||+|++||+.+++++..+. |...|.+++|
T Consensus 151 ----------------------~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 207 (445)
T 2ovr_B 151 ----------------------CLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207 (445)
T ss_dssp ----------------------EEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ----------------------EEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEe
Confidence 334556899999999997 3499999999999999999999998887 8999999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
+ ++.|++|+.||.|++||+.+++.+ ....|...|.++++ +++.+++|+.||.|++||+++.+....
T Consensus 208 ~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~-------- 274 (445)
T 2ovr_B 208 H---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT-------- 274 (445)
T ss_dssp E---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEE--------
T ss_pred c---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEE--------
Confidence 5 468999999999999999998877 44568889999998 788999999999999999988765432
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
...+...|.++.| ++.++++++.|+.|++||+.+.........|...+.++.+ ++++|++|+.||.|++||+.++
T Consensus 275 ~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 275 LQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp ECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred ecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC
Confidence 2345678999998 5789999999999999999877766666668888888777 4679999999999999999876
Q ss_pred CCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCc
Q 005352 562 EEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEE 641 (701)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~ 641 (701)
+.. ..+... ......+..+++++ ..+++++.|+.+++|+..
T Consensus 350 ~~~--------~~~~~~-------------------------~~~~~~v~~~~~~~------~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 350 QCL--------QTLQGP-------------------------NKHQSAVTCLQFNK------NFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp CEE--------EEECST-------------------------TSCSSCEEEEEECS------SEEEEEETTSEEEEEETT
T ss_pred cEE--------EEEccC-------------------------CCCCCCEEEEEECC------CEEEEEeCCCeEEEEECC
Confidence 521 111000 00122334444433 468889999999999998
Q ss_pred cCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCe----EeEEeec
Q 005352 642 KLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGR----IRSFLNY 695 (701)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~----Irvw~~~ 695 (701)
....+..+... ....+.+.+++++++++ +.+|++|+.||+ |.+|+--
T Consensus 391 ~~~~~~~~~~~------~~~~~~~~v~~~~~s~~-~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 391 TGEFIRNLVTL------ESGGSGGVVWRIRASNT-KLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp TCCEEEEEEEC------TTGGGTCEEEEEEECSS-EEEEEEECSSSSSCCEEEEEECC
T ss_pred CCceeeeeecc------ccCCCCceEEEEEecCC-EEEEEEcccCCCCccEEEEEECC
Confidence 88776655211 00112467888999998 999999999997 9999754
No 62
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=290.00 Aligned_cols=291 Identities=13% Similarity=0.148 Sum_probs=230.6
Q ss_pred cccCcceeeecCc--ccccc-ccc---cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC---CCEEEEEeCC
Q 005352 201 DKQGEGERVRLNE--EDAMF-CSK---VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD---GQYLASAGDD 271 (701)
Q Consensus 201 ~~~~~~~~~~~~~--~~~~~-~~~---d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs~D 271 (701)
.|...+.++.+++ ..+++ ++. |+.|+||++....... ....+|...|.+++|+|+ |.+|++|+.|
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL------LREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE------EEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc------eeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 3666777776665 34443 554 8999999987543211 112369999999999998 7999999999
Q ss_pred CcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEc
Q 005352 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (701)
Q Consensus 272 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (701)
|.|++||+.+++ .++..+.
T Consensus 90 g~i~iwd~~~~~-------------------------------------------------------------~~~~~~~ 108 (357)
T 3i2n_A 90 GNLHIWNLEAPE-------------------------------------------------------------MPVYSVK 108 (357)
T ss_dssp SCEEEECTTSCS-------------------------------------------------------------SCSEEEC
T ss_pred CeEEEEeCCCCC-------------------------------------------------------------ccEEEEE
Confidence 999999997753 2456677
Q ss_pred CCccCeEEEEE------ecCC-eEEEEECCCcEEEEECCCCe-eeeeec-C----CCCeEEEE----EeeCCCCEEEEEE
Q 005352 352 GHSGEILDLSW------SKNN-YLLSASIDKTVRLWRVGNDH-CLRVFP-H----SNYVTCVH----FNPVDDNYFISGS 414 (701)
Q Consensus 352 ~h~~~I~~l~~------s~~~-~l~s~s~dg~I~iWd~~~~~-~~~~~~-h----~~~V~~l~----f~p~~~~~l~sgs 414 (701)
+|...|.+++| +|++ +|++++.|+.|++||+.+++ .+..+. | ...+.+++ |+| ++++|++++
T Consensus 109 ~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~ 187 (357)
T 3i2n_A 109 GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGY 187 (357)
T ss_dssp CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEE
T ss_pred ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEc
Confidence 89999999965 5677 99999999999999999887 666664 2 34899998 677 899999999
Q ss_pred cCCcEEEEeCCCCcEEEEecCCCcEEEEEEee---CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeE
Q 005352 415 IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP---DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG 491 (701)
Q Consensus 415 ~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp---~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~ 491 (701)
.||.|++||+++++......+...|.+++|+| ++..|++++.||.|++||+++.+........ ....+...|++
T Consensus 188 ~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~v~~ 264 (357)
T 3i2n_A 188 DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASV---SEKAHKSTVWQ 264 (357)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEE---EEECCSSCEEE
T ss_pred cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeee---ccCCCcCCEEE
Confidence 99999999999999888888999999999999 9999999999999999999875443222111 12356788999
Q ss_pred EEEecCCCCEEEEEECCCcEEEEeCCcc-------------------ceeeecccCCCCeEEEEEecCCCEEE-EEeCCC
Q 005352 492 FQFLPQDSSKVMVSCADSQVRILQGPNV-------------------IGKYKGLRRSGNQLSACFTSDGKHIV-SAGEDS 551 (701)
Q Consensus 492 l~~~p~~~~~l~~~s~dg~I~iwd~~~~-------------------~~~~~~~~~~~~v~~l~~s~dg~~l~-sgs~Dg 551 (701)
++|+|++..++++++.|+.|++||+... ........|...|.+++|+|++++|+ +++.||
T Consensus 265 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~ 344 (357)
T 3i2n_A 265 VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ 344 (357)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence 9999943348999999999999998632 12233345889999999999999998 899999
Q ss_pred cEEEEeCCCCC
Q 005352 552 NVYMWNCIGHE 562 (701)
Q Consensus 552 ~I~iWd~~~~~ 562 (701)
.|++|++.+.+
T Consensus 345 ~i~iw~~~~~~ 355 (357)
T 3i2n_A 345 TVRVLIVTKLN 355 (357)
T ss_dssp EEEEEEECC--
T ss_pred cEEEEECCCcc
Confidence 99999998764
No 63
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.7e-33 Score=288.54 Aligned_cols=250 Identities=17% Similarity=0.229 Sum_probs=199.0
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.+.+|.+.|++++|+|+|++||||+.|++|+|||+.++..
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------------------------------- 47 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------------------------------- 47 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE----------------------------------------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc----------------------------------------
Confidence 4678999999999999999999999999999999987531
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC--C-eEEEEECCCcEEEEECCCCe--eeeeec-CCCCeE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYVT 398 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~~--~~~~~~-h~~~V~ 398 (701)
..+..+.+|.+.|.+++|+++ + +|++++.|++|++||+++++ .+..+. |...|+
T Consensus 48 --------------------~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~ 107 (316)
T 3bg1_A 48 --------------------ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN 107 (316)
T ss_dssp --------------------EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCC
T ss_pred --------------------EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceE
Confidence 124567899999999999863 5 99999999999999998874 444444 899999
Q ss_pred EEEEeeCC--CCEEEEEEcCCcEEEEeCCCCcEE----EEecCCCcEEEEEEeeC-----------------CCeEEEEe
Q 005352 399 CVHFNPVD--DNYFISGSIDGKVRIWAVLSCHVV----DWVDIRQIVTAVCYRPD-----------------GQGGIVGS 455 (701)
Q Consensus 399 ~l~f~p~~--~~~l~sgs~dg~v~iwd~~~~~~~----~~~~~~~~i~~i~~sp~-----------------g~~l~~gs 455 (701)
+++|+| + +.+|++|+.|+.|++||++.+... ....|...+.+++|+|+ +++|++|+
T Consensus 108 ~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 186 (316)
T 3bg1_A 108 SVCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG 186 (316)
T ss_dssp EEEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB
T ss_pred EEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEec
Confidence 999999 6 789999999999999999876322 23357788999999997 47899999
Q ss_pred cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC---CCEEEEEECCCcEEEEeCCccc----eeeecccC
Q 005352 456 MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD---SSKVMVSCADSQVRILQGPNVI----GKYKGLRR 528 (701)
Q Consensus 456 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~---~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~~ 528 (701)
.|+.|++||++..... ........|...|.+++|+|+. +.+|++++.|++|+||++.... .......|
T Consensus 187 ~D~~v~lWd~~~~~~~-----~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 261 (316)
T 3bg1_A 187 CDNLIKLWKEEEDGQW-----KEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF 261 (316)
T ss_dssp TTSBCCEEEECTTSCE-----EEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC
T ss_pred CCCeEEEEEeCCCCcc-----ceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC
Confidence 9999999999754210 0111234577889999999953 3789999999999999987521 11112347
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 529 SGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 529 ~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
...|.+++|+|++++|++++.|+.|+||+...
T Consensus 262 ~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 262 NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 88999999999999999999999999999753
No 64
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.2e-32 Score=290.21 Aligned_cols=292 Identities=15% Similarity=0.124 Sum_probs=223.9
Q ss_pred eeeecccCcceeeecCc---cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeCCC
Q 005352 197 ACVVDKQGEGERVRLNE---EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDG 272 (701)
Q Consensus 197 ~~~~~~~~~~~~~~~~~---~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg 272 (701)
.....|...+.++.+++ ..+++++.|+.|+||++....... ...+.+|.+.|.+++|+| ++.+|++++.|+
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-----FIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-----EECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-----eeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 34445777787776665 458889999999999986433211 112346999999999999 789999999999
Q ss_pred cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcC
Q 005352 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (701)
Q Consensus 273 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (701)
.|++||+.+.. +..+ ....+
T Consensus 142 ~i~iwd~~~~~-~~~~-----------------------------------------------------------~~~~~ 161 (383)
T 3ei3_B 142 ATTLRDFSGSV-IQVF-----------------------------------------------------------AKTDS 161 (383)
T ss_dssp EEEEEETTSCE-EEEE-----------------------------------------------------------ECCCC
T ss_pred EEEEEECCCCc-eEEE-----------------------------------------------------------eccCC
Confidence 99999987532 1111 11134
Q ss_pred CccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCC-EEEEEEcCCcEEEEeCCC---
Q 005352 353 HSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLS--- 426 (701)
Q Consensus 353 h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~-~l~sgs~dg~v~iwd~~~--- 426 (701)
|...|.+++|+|++ +|++++.|+.|++||+. ++++..+. |...|.+++|+| ++. +|++++.|+.|++||+++
T Consensus 162 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~ 239 (383)
T 3ei3_B 162 WDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKD 239 (383)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCS
T ss_pred CCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCc
Confidence 66889999999999 99999999999999994 55665555 999999999999 777 999999999999999998
Q ss_pred -CcEEEEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC----------CCCeeEEEE
Q 005352 427 -CHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP----------CKRITGFQF 494 (701)
Q Consensus 427 -~~~~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~----------~~~i~~l~~ 494 (701)
+..+....|...|++++|+| ++++|++++.|+.|++||+++............ ....+ ...+..+++
T Consensus 240 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~ 318 (383)
T 3ei3_B 240 KNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH-RQFQHLTPIKATWHPMYDLIVAGR 318 (383)
T ss_dssp TTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB-CCCTTSCCCCCEECSSSSEEEEEC
T ss_pred ccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc-cccccccceEEeccCCCCceEEEe
Confidence 66777778999999999999 999999999999999999987665332211110 01111 233444566
Q ss_pred ecCCCCEEEEEECCCcEEEEeCCccceeee--cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 495 LPQDSSKVMVSCADSQVRILQGPNVIGKYK--GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~--~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
+| ++.+ +++.|+.|++||+.+...... .+.+...+..++|+|++++|++|+ ||.|+||++++
T Consensus 319 s~-dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 319 YP-DDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp BC-CTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cC-Cccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 66 3444 667899999999976554443 333567788889999999999997 99999999875
No 65
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8e-32 Score=306.17 Aligned_cols=406 Identities=13% Similarity=0.099 Sum_probs=287.0
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC----eeeeeecCCCCC-CceeEEee--ccCCCcceeeeccccce
Q 005352 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED----ERLTEVDIPEID-PSCIYFTV--NHLSELKPLFMDKEKIS 319 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~----~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~ 319 (701)
..|.+.|.+++|+|+|++||+++ ++.|+||++.++ +....+..+... +.++.+.+ +.. .... ...
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~--~l~s-~~~---- 86 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ--YLCS-GDE---- 86 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC--EEEE-EET----
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC--EEEE-ecC----
Confidence 35899999999999999999998 789999999988 777777766665 66666655 321 1111 111
Q ss_pred eeEEeeecCCccEEEcCCccc----cccCCCeEEEcCCccCeEEEEEecCC-eEEEEECC----CcEEEEECCCCeeeee
Q 005352 320 ILKSLRRTSESACVVFPPKVF----RILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID----KTVRLWRVGNDHCLRV 390 (701)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~d----g~I~iWd~~~~~~~~~ 390 (701)
+..+.+++.... ....+.+..+.+|...|.+++|+|++ +|++++.+ +.|++|| .++.+..
T Consensus 87 ---------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~ 155 (615)
T 1pgu_A 87 ---------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGE 155 (615)
T ss_dssp ---------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEE
T ss_pred ---------CCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCccee
Confidence 222222222100 00124566788899999999999999 89999887 6888888 5556666
Q ss_pred ec-CCCCeEEEEEeeCCCC-EEEEEEcCCcEEEEeCCCCcEEEEe-cCCC---cEEEEEEeeC-CCeEEEEecCCcEEEE
Q 005352 391 FP-HSNYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLSCHVVDWV-DIRQ---IVTAVCYRPD-GQGGIVGSMMGDCRFY 463 (701)
Q Consensus 391 ~~-h~~~V~~l~f~p~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~---~i~~i~~sp~-g~~l~~gs~dg~v~i~ 463 (701)
+. |...|++++|+| ++. +|++++.|+.|++||+.+++.+..+ .|.. .|++++|+|+ +++|++++.||.|++|
T Consensus 156 ~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 234 (615)
T 1pgu_A 156 VSGHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 234 (615)
T ss_dssp CCSCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEE
T ss_pred eecCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 65 899999999999 666 8999999999999999998877544 4777 8999999999 9999999999999999
Q ss_pred ECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccC----CCCeEEEEEec
Q 005352 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRR----SGNQLSACFTS 539 (701)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~----~~~v~~l~~s~ 539 (701)
|+.+++..... ......+...|.+++|+ ++.+|++++.|+.|++||+.+.........+ ...+.++.|.
T Consensus 235 d~~~~~~~~~~----~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 307 (615)
T 1pgu_A 235 DGKSGEFLKYI----EDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT- 307 (615)
T ss_dssp ETTTCCEEEEC----CBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-
T ss_pred ECCCCCEeEEe----cccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-
Confidence 99887654321 00011577889999999 6899999999999999999865544433323 3677888885
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCccc--ccccccccc----------------------ccCCceEEecCC------
Q 005352 540 DGKHIVSAGEDSNVYMWNCIGHEEPAHDQ--AKTIRSLER----------------------FTTNASIAIPWC------ 589 (701)
Q Consensus 540 dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~--~~~~~~~~~----------------------~~~~~~~a~~~~------ 589 (701)
++.+|++++.||.|++||+.+++...... ...+..+.. .+...+.++.|.
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~ 387 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYS 387 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCE
T ss_pred CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEE
Confidence 88899999999999999987643211000 000111000 001112222221
Q ss_pred -----CC-CCCC--------------------------------------------------------------------
Q 005352 590 -----GL-KCGN-------------------------------------------------------------------- 595 (701)
Q Consensus 590 -----~~-~~~~-------------------------------------------------------------------- 595 (701)
+. ..|+
T Consensus 388 ~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 467 (615)
T 1pgu_A 388 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 467 (615)
T ss_dssp EEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred EEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCC
Confidence 00 0111
Q ss_pred ------CCCCC---ccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccc-cccchhhhhhhhhc
Q 005352 596 ------AEKEP---QLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSS-ASALHKSQYKFLKS 665 (701)
Q Consensus 596 ------~~~~~---~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 665 (701)
..... .........+..++|+|+ +..+++++.|+.+++|+.+....+..+.. | ..
T Consensus 468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-----------~~ 532 (615)
T 1pgu_A 468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPS----ETYIAAGDVMGKILLYDLQSREVKTSRWAFR-----------TS 532 (615)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTTEEEECCSCCC-----------SS
T ss_pred eEEEEECCCccccccccCCccCceEEEEECCC----CCEEEEcCCCCeEEEeeCCCCcceeEeecCC-----------CC
Confidence 11000 001112334667788987 77889999999999999988877766654 4 46
Q ss_pred ccccccccC----------CCccEEEEecCCCeEeEEeec
Q 005352 666 SCLCTTSSH----------AWGLVIVTAGWDGRIRSFLNY 695 (701)
Q Consensus 666 ~~~~~~~~~----------~~g~~ivTgg~DG~Irvw~~~ 695 (701)
.+.++++++ + +.+|++|+.||.|++|+.-
T Consensus 533 ~v~~~~~sp~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~ 571 (615)
T 1pgu_A 533 KINAISWKPAEKGANEEEIE-EDLVATGSLDTNIFIYSVK 571 (615)
T ss_dssp CEEEEEECCCC------CCS-CCEEEEEETTSCEEEEESS
T ss_pred ceeEEEEcCccccccccccC-CCEEEEEcCCCcEEEEECC
Confidence 788889998 7 9999999999999999854
No 66
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3e-32 Score=287.42 Aligned_cols=247 Identities=11% Similarity=0.208 Sum_probs=200.1
Q ss_pred eeccCCCcEEEEEEccCCCEE-EEEeC---CCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccccee
Q 005352 245 EIQAHDGSILTMKFSPDGQYL-ASAGD---DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~L-asgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (701)
.+++|.+.|++++|+|++..| ++|+. ||.|+|||+.+++...
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~---------------------------------- 58 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL---------------------------------- 58 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE----------------------------------
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc----------------------------------
Confidence 457799999999999999655 56665 9999999998764211
Q ss_pred eEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC---C-eEEEEECCCcEEEEECCCCe-eeeeec-CC
Q 005352 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN---N-YLLSASIDKTVRLWRVGNDH-CLRVFP-HS 394 (701)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~---~-~l~s~s~dg~I~iWd~~~~~-~~~~~~-h~ 394 (701)
....+|...|.+++|+|+ + +|++++.||.|++||+.+++ ++..+. |.
T Consensus 59 ---------------------------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 111 (357)
T 3i2n_A 59 ---------------------------LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHK 111 (357)
T ss_dssp ---------------------------EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCS
T ss_pred ---------------------------eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecc
Confidence 112368899999999998 5 99999999999999999887 777765 89
Q ss_pred CCeEEEEE------eeCCCCEEEEEEcCCcEEEEeCCCCc-EEEEe-cCC----CcEEEEE----EeeCCCeEEEEecCC
Q 005352 395 NYVTCVHF------NPVDDNYFISGSIDGKVRIWAVLSCH-VVDWV-DIR----QIVTAVC----YRPDGQGGIVGSMMG 458 (701)
Q Consensus 395 ~~V~~l~f------~p~~~~~l~sgs~dg~v~iwd~~~~~-~~~~~-~~~----~~i~~i~----~sp~g~~l~~gs~dg 458 (701)
..|.+++| +| ++++|++++.||.|++||+.+++ .+... .+. ..+.+++ |+|+++++++++.+|
T Consensus 112 ~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~ 190 (357)
T 3i2n_A 112 EIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG 190 (357)
T ss_dssp SCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS
T ss_pred cceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC
Confidence 99999965 56 88999999999999999999876 34333 333 3788888 788999999999999
Q ss_pred cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC--CCCEEEEEECCCcEEEEeCCccceeeec-----ccCCCC
Q 005352 459 DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ--DSSKVMVSCADSQVRILQGPNVIGKYKG-----LRRSGN 531 (701)
Q Consensus 459 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~--~~~~l~~~s~dg~I~iwd~~~~~~~~~~-----~~~~~~ 531 (701)
.|++||+++.+.... ..+...|.+++|+|. ++.++++++.|+.|++||+......... ..|...
T Consensus 191 ~i~i~d~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 261 (357)
T 3i2n_A 191 DIKLFDLRNMALRWE---------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKST 261 (357)
T ss_dssp EEEEEETTTTEEEEE---------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSC
T ss_pred eEEEEECccCceeee---------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCC
Confidence 999999998875321 223467999999995 5789999999999999998754332221 258899
Q ss_pred eEEEEEecCCC-EEEEEeCCCcEEEEeCCCCC
Q 005352 532 QLSACFTSDGK-HIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 532 v~~l~~s~dg~-~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|.+++|+|+++ +|++++.||.|++||+.++.
T Consensus 262 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 262 VWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 99999999998 89999999999999998765
No 67
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=285.04 Aligned_cols=254 Identities=19% Similarity=0.268 Sum_probs=214.2
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+|.+.|++++|+|++++||+|+.||.|+||++.....
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~--------------------------------------- 45 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH--------------------------------------- 45 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---------------------------------------
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---------------------------------------
Confidence 45789999999999999999999999999999999974321
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC--C-eEEEEECCCcEEEEECCCCe--eeeeec-CCCCe
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYV 397 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~~--~~~~~~-h~~~V 397 (701)
+.+..+.+|...|++++|+++ + +|++++.||.|++||+.+++ .+..+. |...|
T Consensus 46 ---------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v 104 (379)
T 3jrp_A 46 ---------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 104 (379)
T ss_dssp ---------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ---------------------eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcce
Confidence 234567789999999999876 6 99999999999999999986 555554 88999
Q ss_pred EEEEEeeCC--CCEEEEEEcCCcEEEEeCCCCc---EEEEecCCCcEEEEEEee-------------CCCeEEEEecCCc
Q 005352 398 TCVHFNPVD--DNYFISGSIDGKVRIWAVLSCH---VVDWVDIRQIVTAVCYRP-------------DGQGGIVGSMMGD 459 (701)
Q Consensus 398 ~~l~f~p~~--~~~l~sgs~dg~v~iwd~~~~~---~~~~~~~~~~i~~i~~sp-------------~g~~l~~gs~dg~ 459 (701)
.+++|+| + +.+|++++.|+.|++||+.+.. ......|...|++++|+| ++..|++++.||.
T Consensus 105 ~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 183 (379)
T 3jrp_A 105 NSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 183 (379)
T ss_dssp EEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSC
T ss_pred EEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCe
Confidence 9999999 7 8999999999999999998873 345567889999999999 6999999999999
Q ss_pred EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC--CCEEEEEECCCcEEEEeCCccc-----eeeecccCCCCe
Q 005352 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPNVI-----GKYKGLRRSGNQ 532 (701)
Q Consensus 460 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~--~~~l~~~s~dg~I~iwd~~~~~-----~~~~~~~~~~~v 532 (701)
|++||+++....... ......|...|.+++|+|+. +.+|++++.|+.|++||+.... .......+...|
T Consensus 184 i~i~d~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 259 (379)
T 3jrp_A 184 VKIWKYNSDAQTYVL----ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 259 (379)
T ss_dssp EEEEEEETTTTEEEE----EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE
T ss_pred EEEEEecCCCcceee----EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcE
Confidence 999999876533211 11234566889999999943 8999999999999999988642 333334478899
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 533 LSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 533 ~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.+++|+|++++|++++.||.|++|++....
T Consensus 260 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 260 WRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 999999999999999999999999988643
No 68
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.1e-32 Score=295.09 Aligned_cols=306 Identities=15% Similarity=0.189 Sum_probs=221.3
Q ss_pred CeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeee---cCCCCeEEEEEeeCCCCEEEEEEcCCcEE
Q 005352 346 PLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVF---PHSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~~~~~l~sgs~dg~v~ 420 (701)
......+|...|++|+|+|.+ +|++|+.||+|+|||+.+++....+ .|.+.|++|+|+|.++++|++|+.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 344567899999999999954 8999999999999999877644433 49999999999997789999999999999
Q ss_pred EEeCCCCcEEEEecC---CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 421 IWAVLSCHVVDWVDI---RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 421 iwd~~~~~~~~~~~~---~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
+||++++.......+ ...+.+++|+|++++|++|+.||.|++||++..... ....|...|++++|+|+
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~---------~~~~h~~~v~~v~~~p~ 261 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW---------NLRMHKKKVTHVALNPC 261 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC---------CSBCCSSCEEEEEECTT
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE---------EEecccceEEeeeecCC
Confidence 999987765544432 345789999999999999999999999999764321 23456788999999997
Q ss_pred CCCEEEEEECCCcEEEEeCCcccee---eecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccc
Q 005352 498 DSSKVMVSCADSQVRILQGPNVIGK---YKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRS 574 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~~~~~---~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~ 574 (701)
+..++++++.|+.|+|||++..... .....|...|++++|+|+|++|++++.||.|+|||+.++..+..........
T Consensus 262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 262 CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence 6778999999999999998754332 2234588999999999999999999999999999998876322111110000
Q ss_pred cccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCcccccccc
Q 005352 575 LERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASA 654 (701)
Q Consensus 575 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~ 654 (701)
.. ....+...|.+ ......+.+++++ ...+..+..++.+++|+......+..+..+
T Consensus 342 ~~---~~~~~~~~~~~----------------~~~~~~~~~~~d~---~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~-- 397 (435)
T 4e54_B 342 FQ---HLTPIKAAWHP----------------RYNLIVVGRYPDP---NFKSCTPYELRTIDVFDGNSGKMMCQLYDP-- 397 (435)
T ss_dssp CS---SSCCCBCEECS----------------SSSCEEEECCCCT---TSCCSSTTCCCCEEEECSSSCCEEEEECCS--
T ss_pred cc---cceeEEEEEcC----------------CCCEEEEEEcCCC---CeEEEEecCCCEEEEEECCCCcEEEEEeCC--
Confidence 00 00001111111 1111222334441 222334455667999999888776554322
Q ss_pred chhhhhhhhhcccccc-cccCCCccEEEEecCCCeEeEEee
Q 005352 655 LHKSQYKFLKSSCLCT-TSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 655 ~~~~~~~~~~~~~~~~-~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
+...+.++ +++++ |.+|++|+ |+.|++|+-
T Consensus 398 --------~~~~v~s~~~fspd-g~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 398 --------ESSGISSLNEFNPM-GDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp --------SCCCCCCEEEECTT-SSCEEEEC-SSEEEECCC
T ss_pred --------CCCcEEEEEEECCC-CCEEEEEc-CCcEEEEEC
Confidence 12356665 57787 99999886 889999974
No 69
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.7e-32 Score=287.72 Aligned_cols=292 Identities=13% Similarity=0.159 Sum_probs=221.4
Q ss_pred ceeccCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSILTMKFSPDG-QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
..+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++....
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------------- 111 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF----------------------------------- 111 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----------------------------------
T ss_pred EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----------------------------------
Confidence 3567899999999999999 9999999999999999986642211
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec-CC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCe
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYV 397 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V 397 (701)
..+.+|...|.+++|+| ++ +|++++.|+.|++||+.......... +...|
T Consensus 112 -------------------------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 166 (383)
T 3ei3_B 112 -------------------------IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWY 166 (383)
T ss_dssp -------------------------ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCE
T ss_pred -------------------------eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCe
Confidence 11236999999999999 55 99999999999999999644333333 44789
Q ss_pred EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCC-eEEEEecCCcEEEEECCCCeeeeeeeE
Q 005352 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~ 476 (701)
.+++|+| ++++|++++.|+.|++||++......+..|...|.+++|+|+++ .|++++.|+.|++||+++.+..... .
T Consensus 167 ~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~ 244 (383)
T 3ei3_B 167 CCVDVSV-SRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY-I 244 (383)
T ss_dssp EEEEEET-TTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE-E
T ss_pred EEEEECC-CCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce-E
Confidence 9999999 99999999999999999997655667778999999999999999 8999999999999999873211100 0
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcccee--eeccc-----C----------CCCeEEEEEec
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK--YKGLR-----R----------SGNQLSACFTS 539 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~--~~~~~-----~----------~~~v~~l~~s~ 539 (701)
.. ..+...|.+++|+|.++.+|++++.|+.|++||+.+.... +..+. | ...+..++|+|
T Consensus 245 ~~----~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~ 320 (383)
T 3ei3_B 245 AE----MPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP 320 (383)
T ss_dssp EE----EECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC
T ss_pred EE----ecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC
Confidence 01 1256789999999966889999999999999998754332 22211 1 23455577777
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCc
Q 005352 540 DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPAR 619 (701)
Q Consensus 540 dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~ 619 (701)
++++ +|+.||.|++||+.+++.. ..+... .....+..++|+|+
T Consensus 321 dg~~--s~s~d~~i~iwd~~~~~~~--------~~l~~~--------------------------~~~~~~~~~~~s~~- 363 (383)
T 3ei3_B 321 DDQL--LLNDKRTIDIYDANSGGLV--------HQLRDP--------------------------NAAGIISLNKFSPT- 363 (383)
T ss_dssp CTTT--CTTCCCCEEEEETTTCCEE--------EEECBT--------------------------TBCSCCCEEEECTT-
T ss_pred Cccc--ccCCCCeEEEEecCCCcee--------eeecCC--------------------------CCCceEEEEEEecC-
Confidence 7776 7789999999999887621 111000 00122344578887
Q ss_pred cccCccccccCCCCcccCCCCcc
Q 005352 620 FSLGQEYVFESFPKGCATWPEEK 642 (701)
Q Consensus 620 ~~~~~~~~~~s~d~~~~~W~~~~ 642 (701)
+..+++++ |+.+++|+.++
T Consensus 364 ---g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 364 ---GDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ---SSEEEEEE-TTEEEEEECC-
T ss_pred ---ccEEEEec-CCcEEEEecCC
Confidence 56777775 99999999754
No 70
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-31 Score=278.09 Aligned_cols=282 Identities=15% Similarity=0.204 Sum_probs=235.3
Q ss_pred ecccCcceeeec--CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 200 VDKQGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 200 ~~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
..|...+.++.+ ++..+++++.|+.|+||+..... ....+.+|.+.|.+++|+|++++|++++.||.|++|
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-------RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-------hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 456777776655 55678889999999999875432 224577899999999999999999999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
|+.+++.+ ..+. |...|
T Consensus 102 d~~~~~~~--------------------------------------------------------------~~~~-~~~~v 118 (369)
T 3zwl_B 102 DVSNGQCV--------------------------------------------------------------ATWK-SPVPV 118 (369)
T ss_dssp ETTTCCEE--------------------------------------------------------------EEEE-CSSCE
T ss_pred ECCCCcEE--------------------------------------------------------------EEee-cCCCe
Confidence 99876532 2223 67789
Q ss_pred EEEEEecCC-eEEEEECC-----CcEEEEECCCCeee-----------eee-cCCC--CeEEEEEeeCCCCEEEEEEcCC
Q 005352 358 LDLSWSKNN-YLLSASID-----KTVRLWRVGNDHCL-----------RVF-PHSN--YVTCVHFNPVDDNYFISGSIDG 417 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~d-----g~I~iWd~~~~~~~-----------~~~-~h~~--~V~~l~f~p~~~~~l~sgs~dg 417 (701)
.+++|+|++ +|++++.+ +.|++||+...... ..+ .|.. .+.+++|+| ++++|++++.||
T Consensus 119 ~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg 197 (369)
T 3zwl_B 119 KRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDG 197 (369)
T ss_dssp EEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTS
T ss_pred EEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCC
Confidence 999999999 99999998 99999999766422 111 2444 899999999 999999999999
Q ss_pred cEEEEeCCC-CcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 418 KVRIWAVLS-CHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 418 ~v~iwd~~~-~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
.|++||+++ .+.+ ....+...|.+++|+|++++|++++.||.|++||+.+.+...... +...+..++|+
T Consensus 198 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---------~~~~~~~~~~~ 268 (369)
T 3zwl_B 198 KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---------TDCPLNTAVIT 268 (369)
T ss_dssp EEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---------CSSCEEEEEEC
T ss_pred EEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec---------CCCCceeEEec
Confidence 999999998 5555 455688999999999999999999999999999999876543321 44679999999
Q ss_pred cCCCCEEEEEECCC--------------cEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 496 PQDSSKVMVSCADS--------------QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 496 p~~~~~l~~~s~dg--------------~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
| ++.++++++.++ .+++||............|...|.+++|+|++++|++++.||.|++|+++++
T Consensus 269 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 269 P-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp S-SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred C-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 9 789999999888 8999999877766666668999999999999999999999999999999875
Q ss_pred C
Q 005352 562 E 562 (701)
Q Consensus 562 ~ 562 (701)
.
T Consensus 348 ~ 348 (369)
T 3zwl_B 348 Y 348 (369)
T ss_dssp H
T ss_pred c
Confidence 4
No 71
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.7e-32 Score=288.82 Aligned_cols=309 Identities=9% Similarity=0.015 Sum_probs=218.1
Q ss_pred eeecCccccccccc-------cceEEEEEccCccchhhh-cc--cCceeccCCCcEEEEEEccCCCEEEEEe--------
Q 005352 208 RVRLNEEDAMFCSK-------VQRVKVYHCKKRSKELSA-LY--KGQEIQAHDGSILTMKFSPDGQYLASAG-------- 269 (701)
Q Consensus 208 ~~~~~~~~~~~~~~-------d~~v~vw~~~~~~~~~~~-~~--~~~~l~~H~~~I~~l~fspdg~~Lasgs-------- 269 (701)
++.+++..+++|+. ++.|++|++......... .. ....+.+|...|.+++++ +..+++|.
T Consensus 21 ~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~ 98 (365)
T 4h5i_A 21 KFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKIT 98 (365)
T ss_dssp EEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHH
T ss_pred EEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEE
Confidence 44555556666643 456999998654432221 11 122567899999888764 55666654
Q ss_pred ---CCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCC
Q 005352 270 ---DDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346 (701)
Q Consensus 270 ---~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (701)
.|+.+++|++.......... .. ..
T Consensus 99 s~~~d~~~r~~~~~~~~~~~~~~--------------------------------~~---------------------~~ 125 (365)
T 4h5i_A 99 QGKGNKHLRKFKYDKVNDQLEFL--------------------------------TS---------------------VD 125 (365)
T ss_dssp HTSCCCCEEEEEEETTTTEEEEE--------------------------------EE---------------------EC
T ss_pred EecCCCcEEEEEecCCCceEEEe--------------------------------ee---------------------ec
Confidence 46778888876543111000 00 00
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEE--EECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLS--ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s--~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd 423 (701)
......+...+.+++|+|+| ++++ ++.|++|+|||+.+++++..+.|...|.+++|+| ++++|++++. +.+++|+
T Consensus 126 ~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~ 203 (365)
T 4h5i_A 126 FDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITG-SSLEVIS 203 (365)
T ss_dssp SSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECS-SCEEEEE
T ss_pred eeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEeccc-eeEEEEE
Confidence 01113455678999999999 6654 4478999999999999999999999999999999 9999999985 5567777
Q ss_pred CCCCcEEE---EecCCCcEEEEEEeeCCCeEEEEecCC----cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 424 VLSCHVVD---WVDIRQIVTAVCYRPDGQGGIVGSMMG----DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 424 ~~~~~~~~---~~~~~~~i~~i~~sp~g~~l~~gs~dg----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
..+++.+. ...|...|.+++|+|+++.+++++.++ .+++|++............ ...+...|++++|+|
T Consensus 204 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~V~~~~~Sp 279 (365)
T 4h5i_A 204 TVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ----VTNRFKGITSMDVDM 279 (365)
T ss_dssp TTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE----EESSCSCEEEEEECT
T ss_pred eccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeee----ecCCCCCeEeEEECC
Confidence 77766542 234677899999999999999999887 5888998776544322211 234567899999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcccccccccc
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSL 575 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~ 575 (701)
++.+|++|+.|+.|+|||+.+....... ..|...|++++|+|||++|||||.|++|+||++...........+.+..+
T Consensus 280 -dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~~~s~~~~l~kl 358 (365)
T 4h5i_A 280 -KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYANYTSMKQKISKL 358 (365)
T ss_dssp -TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC-----------
T ss_pred -CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcCccCccccceee
Confidence 7999999999999999999887665543 45999999999999999999999999999999976554333444455555
Q ss_pred ccc
Q 005352 576 ERF 578 (701)
Q Consensus 576 ~~~ 578 (701)
|+.
T Consensus 359 ~~~ 361 (365)
T 4h5i_A 359 EHH 361 (365)
T ss_dssp ---
T ss_pred ecc
Confidence 544
No 72
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.5e-32 Score=297.60 Aligned_cols=293 Identities=13% Similarity=0.181 Sum_probs=219.1
Q ss_pred eeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 245 EIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 245 ~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
...+|...|+||+|+| ++.+||+|+.||.|+|||+.+++.
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~--------------------------------------- 154 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK--------------------------------------- 154 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC---------------------------------------
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc---------------------------------------
Confidence 4567999999999999 567999999999999999876542
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec-CC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVT 398 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~ 398 (701)
.....+.+|.+.|++|+|+| ++ +|++++.||+|++||++++....... +...+.
T Consensus 155 ---------------------~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 213 (435)
T 4e54_B 155 ---------------------PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFC 213 (435)
T ss_dssp ---------------------CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCC
T ss_pred ---------------------eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEE
Confidence 11233468999999999998 45 99999999999999998776544443 345688
Q ss_pred EEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCC-eEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
+++|+| ++.+|++|+.||.|++||++...+..+..|...|++++|+|++. +|++|+.|+.|++||+++.......
T Consensus 214 ~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~--- 289 (435)
T 4e54_B 214 SLDVSA-SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF--- 289 (435)
T ss_dssp CEEEET-TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC---
T ss_pred EEEECC-CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE---
Confidence 999999 99999999999999999998777667778999999999999886 6778999999999999876532211
Q ss_pred eecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCC------CCeEEEEEecCCCEEEEEe---
Q 005352 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRS------GNQLSACFTSDGKHIVSAG--- 548 (701)
Q Consensus 478 ~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~------~~v~~l~~s~dg~~l~sgs--- 548 (701)
.....|...|++++|+| ++.+|++++.|+.|+|||+.+.........|. ..+..+.|+|++.++++++
T Consensus 290 --~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 366 (435)
T 4e54_B 290 --LYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 366 (435)
T ss_dssp --SBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCC
T ss_pred --EEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCC
Confidence 11245678899999999 78999999999999999998654433322221 2334566777777777664
Q ss_pred ---------CCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCcc-ccCCC
Q 005352 549 ---------EDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENL-AFAPA 618 (701)
Q Consensus 549 ---------~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~sp~ 618 (701)
.++.|++||..+++... .+ . ..+...+..+ +|+|+
T Consensus 367 ~~~~~~~~~~~~~i~iwd~~~g~~~~--------~l------------~---------------~~~~~~v~s~~~fspd 411 (435)
T 4e54_B 367 PNFKSCTPYELRTIDVFDGNSGKMMC--------QL------------Y---------------DPESSGISSLNEFNPM 411 (435)
T ss_dssp TTSCCSSTTCCCCEEEECSSSCCEEE--------EE------------C---------------CSSCCCCCCEEEECTT
T ss_pred CCeEEEEecCCCEEEEEECCCCcEEE--------EE------------e---------------CCCCCcEEEEEEECCC
Confidence 23578999987775210 00 0 0112234444 58887
Q ss_pred ccccCccccccCCCCcccCCCCccCC
Q 005352 619 RFSLGQEYVFESFPKGCATWPEEKLP 644 (701)
Q Consensus 619 ~~~~~~~~~~~s~d~~~~~W~~~~~~ 644 (701)
+..++++ .|+.|++|+.+...
T Consensus 412 ----g~~lasg-~d~~i~iW~~~~gk 432 (435)
T 4e54_B 412 ----GDTLASA-MGYHILIWSQQEAR 432 (435)
T ss_dssp ----SSCEEEE-CSSEEEECCCC---
T ss_pred ----CCEEEEE-cCCcEEEEECCcCe
Confidence 5555655 58899999987764
No 73
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-31 Score=286.97 Aligned_cols=277 Identities=19% Similarity=0.296 Sum_probs=227.1
Q ss_pred ceeeecCccccccccccceEEEEEccCccchhhhcccCceec-cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCee
Q 005352 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ-AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (701)
Q Consensus 206 ~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~ 284 (701)
...+.++++.+++++.++.|+||+....... ..+. .|.+.|++++|+|++++|++|+.||.|++||+.+++
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~-------~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~- 167 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVS-------ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT- 167 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEE-------EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEe-------EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-
Confidence 4567788889999999999999998654321 1122 389999999999999999999999999999997764
Q ss_pred eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
.+..+.+|...|.+++|++
T Consensus 168 -------------------------------------------------------------~~~~~~~~~~~v~~~~~~~ 186 (401)
T 4aez_A 168 -------------------------------------------------------------KLRTMAGHQARVGCLSWNR 186 (401)
T ss_dssp -------------------------------------------------------------EEEEECCCSSCEEEEEEET
T ss_pred -------------------------------------------------------------EEEEecCCCCceEEEEECC
Confidence 3445668999999999943
Q ss_pred CCeEEEEECCCcEEEEECC-CCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEE
Q 005352 365 NNYLLSASIDKTVRLWRVG-NDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTA 441 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~-~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~ 441 (701)
.+|++++.||.|++||++ ....+..+. |...|.+++|+| ++++|++|+.|+.|++||+++++.+. ...|...|.+
T Consensus 187 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 264 (401)
T 4aez_A 187 -HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264 (401)
T ss_dssp -TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred -CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence 399999999999999998 455555554 999999999999 99999999999999999999988774 4468899999
Q ss_pred EEEeeCCCeE-EEEe--cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE--CCCcEEEEeC
Q 005352 442 VCYRPDGQGG-IVGS--MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC--ADSQVRILQG 516 (701)
Q Consensus 442 i~~sp~g~~l-~~gs--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s--~dg~I~iwd~ 516 (701)
++|+|++..+ ++++ .|+.|++||+.+++..... .+...|.+++|+| ++..+++++ .|+.|++||+
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~---------~~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV---------DAGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE---------ECSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEE
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE---------eCCCcEEEEEECC-CCCeEEEEeecCCCcEEEEec
Confidence 9999977554 4444 6999999999987654322 1336799999999 678888854 7999999998
Q ss_pred Cc--cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 517 PN--VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 517 ~~--~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.+ .........|...|.+++|+|++++|++++.||.|++|++.+++.
T Consensus 335 ~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 335 SSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp ETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred CCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 76 444444556889999999999999999999999999999998874
No 74
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=295.41 Aligned_cols=366 Identities=17% Similarity=0.197 Sum_probs=239.8
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCce
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSC 297 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 297 (701)
...++.++||++.... ....+++|.+.|++|+|+| ++++||+|+.||.|++||+.+++....+....
T Consensus 19 ~~~~~~~~v~~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----- 86 (408)
T 4a11_B 19 RRAESTRRVLGLELNK-------DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA----- 86 (408)
T ss_dssp HHHHHHHHHHTEEECT-------TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE-----
T ss_pred eeccCcceeeccccCc-------ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc-----
Confidence 3455667777654321 1234677999999999999 99999999999999999998765332211000
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec-CC-eEEEEECCC
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDK 375 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~-~l~s~s~dg 375 (701)
... .......+|...|.+++|+| ++ +|++++.|+
T Consensus 87 -----------------------~~~---------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 87 -----------------------VCS---------------------IGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK 122 (408)
T ss_dssp -----------------------EEE---------------------ECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred -----------------------ccc---------------------ccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence 000 00011246999999999999 55 999999999
Q ss_pred cEEEEECCCCeeeeeecCCCCeEEEEEeeC--CCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCe-E
Q 005352 376 TVRLWRVGNDHCLRVFPHSNYVTCVHFNPV--DDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQG-G 451 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~--~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~-l 451 (701)
.|++||+.+++.+..+.+...+.++.|+|. ++.++++++.|+.|++||+++++.+. +..|...|++++|+|+++. |
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll 202 (408)
T 4a11_B 123 TLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYIL 202 (408)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEE
T ss_pred eEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEE
Confidence 999999999999999999999999999983 23499999999999999999887664 4458899999999999985 8
Q ss_pred EEEecCCcEEEEECCCCeeeeeee--------EEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceee
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAE--------ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY 523 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~--------~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~ 523 (701)
++++.||.|++||++......... .........+...|.+++|+| ++.+|++++.|+.|++||+.+.....
T Consensus 203 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 203 ATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTL 281 (408)
T ss_dssp EEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCBCC
T ss_pred EEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCccce
Confidence 899999999999998764221100 001111245778899999999 78999999999999999998654433
Q ss_pred eccc-----CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCC
Q 005352 524 KGLR-----RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEK 598 (701)
Q Consensus 524 ~~~~-----~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 598 (701)
.... ....+........+..+++++.|+.|++||+.+++.. ..+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--------~~~----------------------- 330 (408)
T 4a11_B 282 VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI--------TML----------------------- 330 (408)
T ss_dssp CCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE--------EEE-----------------------
T ss_pred eccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce--------eee-----------------------
Confidence 2211 1111222222334556777788999999999877621 111
Q ss_pred CCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCcc
Q 005352 599 EPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGL 678 (701)
Q Consensus 599 ~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 678 (701)
..+...+..++|+|+ +..+++++.|+.+++|+.+....+....... .. ....+....
T Consensus 331 -----~~~~~~v~~~~~s~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~------------~~--~~~~~~~~~ 387 (408)
T 4a11_B 331 -----KGHYKTVDCCVFQSN----FQELYSGSRDCNILAWVPSLYEPVPDDDETT------------TK--SQLNPAFED 387 (408)
T ss_dssp -----CCCSSCEEEEEEETT----TTEEEEEETTSCEEEEEECC------------------------------------
T ss_pred -----ccCCCeEEEEEEcCC----CCEEEEECCCCeEEEEeCCCCCccCCCCceE------------ec--cccccccce
Confidence 011334666788886 6778899999999999998887655442220 01 111222255
Q ss_pred EEEEecCCCeEeEEeec
Q 005352 679 VIVTAGWDGRIRSFLNY 695 (701)
Q Consensus 679 ~ivTgg~DG~Irvw~~~ 695 (701)
...+++.||.|++|.+-
T Consensus 388 ~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 388 AWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -----------------
T ss_pred eecccCccCceeecCCc
Confidence 67788999999999864
No 75
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-30 Score=286.08 Aligned_cols=279 Identities=18% Similarity=0.313 Sum_probs=233.5
Q ss_pred eeecccCc-ceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEE
Q 005352 198 CVVDKQGE-GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (701)
Q Consensus 198 ~~~~~~~~-~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 276 (701)
.+..|... +.++.++++.+++|+.|+.|++|+..... ....+.+|.+.|++++|+|++ +|++|+.||+|++
T Consensus 116 ~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~-------~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKK-------FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCc-------EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 33455555 36788899999999999999999975432 224577899999999999988 9999999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
||+.+++. +..+.+|...
T Consensus 188 wd~~~~~~--------------------------------------------------------------~~~~~~h~~~ 205 (464)
T 3v7d_B 188 WDIKKGCC--------------------------------------------------------------THVFEGHNST 205 (464)
T ss_dssp EETTTTEE--------------------------------------------------------------EEEECCCSSC
T ss_pred EECCCCcE--------------------------------------------------------------EEEECCCCCc
Confidence 99987642 3456789999
Q ss_pred eEEEEEec--CC-eEEEEECCCcEEEEECCCCeee-----------------------eee-cCCCCeEEEEEeeCCCCE
Q 005352 357 ILDLSWSK--NN-YLLSASIDKTVRLWRVGNDHCL-----------------------RVF-PHSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 357 I~~l~~s~--~~-~l~s~s~dg~I~iWd~~~~~~~-----------------------~~~-~h~~~V~~l~f~p~~~~~ 409 (701)
|.+++|++ ++ +|++++.|++|++||+.++... ..+ .|...|.++ ++ ++++
T Consensus 206 v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-~~~~ 282 (464)
T 3v7d_B 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG-HGNI 282 (464)
T ss_dssp EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE-ETTE
T ss_pred cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC-CCCE
Confidence 99999995 55 9999999999999999887532 222 377788877 45 7899
Q ss_pred EEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCC
Q 005352 410 FISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 488 (701)
|++++.||.|++||+.+++.+. ...|...|.+++|+|+++.+++|+.||.|++||+++++.... ...|...
T Consensus 283 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~--------~~~h~~~ 354 (464)
T 3v7d_B 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT--------LQGHTAL 354 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE--------ECCCSSC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE--------EeCCCCc
Confidence 9999999999999999988774 446889999999999999999999999999999998875432 2346678
Q ss_pred eeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 489 i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|.++.++ +.++++++.|+.|++||+.+....+... +...+..++|++++++|++|+ ||.|++||+.+++
T Consensus 355 v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 355 VGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp EEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred EEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 9999996 4799999999999999999877666553 667788899999999999999 8999999999887
No 76
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.9e-32 Score=291.47 Aligned_cols=319 Identities=13% Similarity=0.159 Sum_probs=238.2
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+|.+.|++|+|+| ++|++|+.||.|++|++.+++....
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~------------------------------------ 51 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP------------------------------------ 51 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG------------------------------------
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC------------------------------------
Confidence 45778999999999998 7999999999999999987541100
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC----C----eEEEEECCCcEEEEECCCCee-----eee
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN----N----YLLSASIDKTVRLWRVGNDHC-----LRV 390 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~----~----~l~s~s~dg~I~iWd~~~~~~-----~~~ 390 (701)
...+..+.+|...|.+++|+|+ + +|++++.|+.|++||+.+++. +..
T Consensus 52 --------------------~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 111 (397)
T 1sq9_A 52 --------------------KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 111 (397)
T ss_dssp --------------------GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE
T ss_pred --------------------CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee
Confidence 0345667789999999999998 5 889999999999999998876 666
Q ss_pred ec-C-----CCCeEEEEEe----eCCCCE-EEEEEcCCcEEEEeCCC------CcEE------EE-------ecCCCcEE
Q 005352 391 FP-H-----SNYVTCVHFN----PVDDNY-FISGSIDGKVRIWAVLS------CHVV------DW-------VDIRQIVT 440 (701)
Q Consensus 391 ~~-h-----~~~V~~l~f~----p~~~~~-l~sgs~dg~v~iwd~~~------~~~~------~~-------~~~~~~i~ 440 (701)
+. | ...|.+++|+ | ++++ |++++.||.|++||+.+ ++.+ .+ ..+...|+
T Consensus 112 ~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 190 (397)
T 1sq9_A 112 LDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 190 (397)
T ss_dssp ECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCC
T ss_pred ecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCce
Confidence 65 6 4899999999 9 8999 99999999999999988 5433 23 23678899
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC---CCCeeEEEEecCCCCEEEEEECC---CcEEEE
Q 005352 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP---CKRITGFQFLPQDSSKVMVSCAD---SQVRIL 514 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~---~~~i~~l~~~p~~~~~l~~~s~d---g~I~iw 514 (701)
+++|+|++ .|++++.+|.|++||+++.+...... . ...| ...|.+++|+| ++.+|++++.| +.|++|
T Consensus 191 ~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~---~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 191 SVDISERG-LIATGFNNGTVQISELSTLRPLYNFE--S---QHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp EEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE--C---CC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEE
T ss_pred EEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe--c---cccccccCCccceEEECC-CCCEEEEEecCCCCceEEEE
Confidence 99999999 99999999999999999876543221 1 0114 67899999999 68999999999 999999
Q ss_pred eCCccceeeeccc-------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCC
Q 005352 515 QGPNVIGKYKGLR-------------RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTN 581 (701)
Q Consensus 515 d~~~~~~~~~~~~-------------~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 581 (701)
|+.+......... |...|.+++|+|++++|++++.||.|++||+.+++.. ..+......
T Consensus 264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~ 335 (397)
T 1sq9_A 264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI--------TTLNMHCDD 335 (397)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--------EEEECCGGG
T ss_pred ECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee--------EEEecccCc
Confidence 9987666555555 8899999999999999999999999999999876521 111100000
Q ss_pred ceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccc------cCccccccCCCCcccCCCCccC
Q 005352 582 ASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFS------LGQEYVFESFPKGCATWPEEKL 643 (701)
Q Consensus 582 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~------~~~~~~~~s~d~~~~~W~~~~~ 643 (701)
. ..... ...........+...+..++|+|++.. ....+++++.|+.+++|+.+..
T Consensus 336 ~-----~~~~~--~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 336 I-----EIEED--ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp C-----SSGGG--CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred c-----cchhh--hhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 0 00000 000000011122456777888887311 1167899999999999997653
No 77
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.6e-31 Score=278.13 Aligned_cols=255 Identities=19% Similarity=0.290 Sum_probs=211.2
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+|.+.|++|+|+|++++||+|+.||.|++||+.++....
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------------------------------- 47 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW------------------------------------- 47 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-------------------------------------
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-------------------------------------
Confidence 4577899999999999999999999999999999998653110
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec--CC-eEEEEECCCcEEEEECCCC---------eeeeee
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK--NN-YLLSASIDKTVRLWRVGND---------HCLRVF 391 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~--~~-~l~s~s~dg~I~iWd~~~~---------~~~~~~ 391 (701)
+....+.+|...|.+++|+| ++ +|++++.||+|++||+.++ +++..+
T Consensus 48 ---------------------~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 106 (351)
T 3f3f_A 48 ---------------------ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL 106 (351)
T ss_dssp ---------------------EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE
T ss_pred ---------------------eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee
Confidence 23456778999999999999 46 9999999999999999887 445555
Q ss_pred c-CCCCeEEEEEeeCC--CCEEEEEEcCCcEEEEeCCCCcEEEE--------------ecCCCcEEEEEEeeC---CCeE
Q 005352 392 P-HSNYVTCVHFNPVD--DNYFISGSIDGKVRIWAVLSCHVVDW--------------VDIRQIVTAVCYRPD---GQGG 451 (701)
Q Consensus 392 ~-h~~~V~~l~f~p~~--~~~l~sgs~dg~v~iwd~~~~~~~~~--------------~~~~~~i~~i~~sp~---g~~l 451 (701)
. |...|.+++|+| + +++|++++.||.|++||+++++.+.. ..+...+.+++|+|+ +..+
T Consensus 107 ~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 185 (351)
T 3f3f_A 107 NDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185 (351)
T ss_dssp CCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEE
T ss_pred cccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEE
Confidence 4 899999999999 7 99999999999999999988764321 146678999999997 8999
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC---CEEEEEECCCcEEEEeCCcc---------
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS---SKVMVSCADSQVRILQGPNV--------- 519 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~---~~l~~~s~dg~I~iwd~~~~--------- 519 (701)
++++.++.+.+|+......... .....|...|++++|+|+.+ .+|++++.|+.|++||+...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 259 (351)
T 3f3f_A 186 AVSALEQAIIYQRGKDGKLHVA------AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEES 259 (351)
T ss_dssp EEEETTEEEEEEECTTSCEEEE------EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------
T ss_pred EEecCCCcEEEEccCCCceeee------eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCc
Confidence 9999999998888877654321 12345678899999999432 79999999999999998652
Q ss_pred -------------------------------------ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 520 -------------------------------------IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 520 -------------------------------------~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
........|...|++++|+|++++|++|+.||.|+||++.+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 260 LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp -------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 2222334588899999999999999999999999999999876
Q ss_pred C
Q 005352 563 E 563 (701)
Q Consensus 563 ~ 563 (701)
.
T Consensus 340 ~ 340 (351)
T 3f3f_A 340 E 340 (351)
T ss_dssp C
T ss_pred c
Confidence 3
No 78
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.6e-32 Score=285.14 Aligned_cols=302 Identities=12% Similarity=0.177 Sum_probs=235.1
Q ss_pred eccCCCcEEEEEEccC----CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 246 IQAHDGSILTMKFSPD----GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 246 l~~H~~~I~~l~fspd----g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
..+|.++|++++|+|+ ..++++++.++.|++|++.+++.+..+..
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~------------------------------- 62 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS------------------------------- 62 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEE-------------------------------
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeee-------------------------------
Confidence 4579999999999984 45667777778999999987654322210
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC----C-eEEEEECCCcEEEEECCCCeeeeeec-CCC
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN----N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSN 395 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~----~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~ 395 (701)
+....|...|.+++|+|+ + +|++++.||.|++||+.+++.+..+. |..
T Consensus 63 --------------------------~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 116 (366)
T 3k26_A 63 --------------------------YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN 116 (366)
T ss_dssp --------------------------EECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS
T ss_pred --------------------------ccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC
Confidence 111237788999999998 6 89999999999999999999998887 999
Q ss_pred CeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe----cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee
Q 005352 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 396 ~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~----~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
.|++++|+|.++++|++++.||.|++||+++++.+... .|...|.+++|+|++++|++++.||.|++||+++.+..
T Consensus 117 ~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 117 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 196 (366)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccc
Confidence 99999999977899999999999999999999888665 68899999999999999999999999999999876432
Q ss_pred eeeeE--------------------EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce----------
Q 005352 472 LDAEI--------------------CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG---------- 521 (701)
Q Consensus 472 ~~~~~--------------------~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~---------- 521 (701)
..... ........+...|.+++|+ +.++++++.|+.|++||+.+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 273 (366)
T 3k26_A 197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 273 (366)
T ss_dssp HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCC
T ss_pred cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCc
Confidence 11100 0011122377889999998 46999999999999999875432
Q ss_pred ----eeecccCCCCeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCC
Q 005352 522 ----KYKGLRRSGNQLSACFTSD--GKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGN 595 (701)
Q Consensus 522 ----~~~~~~~~~~v~~l~~s~d--g~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 595 (701)
......|...|.+++|+|+ +++|++|+.||.|++||+.+++.... ....+ .+
T Consensus 274 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~-------------~~----- 331 (366)
T 3k26_A 274 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA----KCTTL-------------TH----- 331 (366)
T ss_dssp CEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC----EEEEE-------------CC-----
T ss_pred chheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc----cceEE-------------cc-----
Confidence 2333447788999999999 99999999999999999988752110 00000 00
Q ss_pred CCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCc
Q 005352 596 AEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEE 641 (701)
Q Consensus 596 ~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~ 641 (701)
......+..++|+|+ +..+++++.|+.+++|+..
T Consensus 332 --------~~~~~~v~~~~~s~~----~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 332 --------HKCGAAIRQTSFSRD----SSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp --------TTCCSCEEEEEECTT----SSEEEEEETTSEEEEEEC-
T ss_pred --------cccCCceEEEEeCCC----CCeEEEEeCCCEEEEEEec
Confidence 001345677888996 7788999999999999864
No 79
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-31 Score=272.65 Aligned_cols=286 Identities=16% Similarity=0.153 Sum_probs=229.1
Q ss_pred CceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+.+.+|.+.|++++| |++++|++|+.||.|++||+.+++.
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~-------------------------------------- 51 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL-------------------------------------- 51 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE--------------------------------------
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE--------------------------------------
Confidence 3568899999999999 9999999999999999999976542
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC---eeeeeec-CCCCe
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND---HCLRVFP-HSNYV 397 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~---~~~~~~~-h~~~V 397 (701)
...+..|...|.+++|+|++ +|++++.|+.|++|++... +.+..+. |...|
T Consensus 52 ------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i 107 (313)
T 3odt_A 52 ------------------------GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNV 107 (313)
T ss_dssp ------------------------EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCE
T ss_pred ------------------------EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCE
Confidence 33456788999999999999 9999999999999998765 4444454 89999
Q ss_pred EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeE
Q 005352 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~ 476 (701)
.+++|+ +++|++++.||.|++|| ..........+...+.+++|.| +++.+++++.||.|++||.....
T Consensus 108 ~~~~~~---~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------- 176 (313)
T 3odt_A 108 CSLSFQ---DGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVI------- 176 (313)
T ss_dssp EEEEEE---TTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEE-------
T ss_pred EEEEec---CCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceE-------
Confidence 999994 57999999999999999 3333445667889999999999 99999999999999999943211
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
......+...+.+++|+| ++. +++++.|+.|++||+.+.........|...|.+++|+|++ .|++++.||.|++|
T Consensus 177 --~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iw 251 (313)
T 3odt_A 177 --KTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIW 251 (313)
T ss_dssp --EEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEE
T ss_pred --EEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEE
Confidence 111233668899999999 455 9999999999999998776666666689999999999999 59999999999999
Q ss_pred eCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCccc
Q 005352 557 NCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCA 636 (701)
Q Consensus 557 d~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~ 636 (701)
|+.+++.. ..+ ......+..++|+|+ +. +++++.|+.++
T Consensus 252 d~~~~~~~--------~~~----------------------------~~~~~~i~~~~~~~~----~~-~~~~~~dg~i~ 290 (313)
T 3odt_A 252 SKENGSLK--------QVI----------------------------TLPAISIWSVDCMSN----GD-IIVGSSDNLVR 290 (313)
T ss_dssp CTTTCCEE--------EEE----------------------------ECSSSCEEEEEECTT----SC-EEEEETTSCEE
T ss_pred ECCCCcee--------EEE----------------------------eccCceEEEEEEccC----CC-EEEEeCCCcEE
Confidence 99887521 000 011224566778886 33 67789999999
Q ss_pred CCCCccCCCCcc
Q 005352 637 TWPEEKLPALSQ 648 (701)
Q Consensus 637 ~W~~~~~~~~~~ 648 (701)
+|+.+....+..
T Consensus 291 iw~~~~~~~~~~ 302 (313)
T 3odt_A 291 IFSQEKSRWASE 302 (313)
T ss_dssp EEESCGGGCCC-
T ss_pred EEeCCCCceeeh
Confidence 999887665443
No 80
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.5e-31 Score=281.06 Aligned_cols=285 Identities=13% Similarity=0.182 Sum_probs=228.2
Q ss_pred ccCcceeee--cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 005352 202 KQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 202 ~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 279 (701)
+...+.++. +++..+++++.++.|+||+...... .....+.+|.+.|.+++|+|++++|++++.||.|++||+
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 455565554 4556788898999999999765421 123457789999999999999999999999999999999
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
.+++... ...+..|...|.+
T Consensus 82 ~~~~~~~------------------------------------------------------------~~~~~~~~~~v~~ 101 (372)
T 1k8k_C 82 KGRTWKP------------------------------------------------------------TLVILRINRAARC 101 (372)
T ss_dssp ETTEEEE------------------------------------------------------------EEECCCCSSCEEE
T ss_pred CCCeeee------------------------------------------------------------eEEeecCCCceeE
Confidence 8765221 1223568889999
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCCCee---eeee--cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC--------
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHC---LRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-------- 425 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~~~~---~~~~--~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~-------- 425 (701)
++|+|++ +|++++.|+.|++||+..+.. ...+ .|...|++++|+| ++++|++++.||.|++||++
T Consensus 102 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 180 (372)
T 1k8k_C 102 VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERP 180 (372)
T ss_dssp EEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCC
T ss_pred EEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccc
Confidence 9999999 999999999999999988763 2333 3789999999999 99999999999999999964
Q ss_pred ----------CCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 426 ----------SCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 426 ----------~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
.++.+. +..|...|++++|+|++++|++++.||.|++||+++.+..... ..+...|.+++|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~v~~~~~ 252 (372)
T 1k8k_C 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL--------ASETLPLLAVTF 252 (372)
T ss_dssp CCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE--------ECSSCCEEEEEE
T ss_pred cccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE--------ccCCCCeEEEEE
Confidence 455554 4467889999999999999999999999999999887654321 234568999999
Q ss_pred ecCCCCEEEEEECCCcEEEEeCCc--cc---------------------ee-----------------eec-ccCCCCeE
Q 005352 495 LPQDSSKVMVSCADSQVRILQGPN--VI---------------------GK-----------------YKG-LRRSGNQL 533 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg~I~iwd~~~--~~---------------------~~-----------------~~~-~~~~~~v~ 533 (701)
+| ++.+++++ .|+.|++|++.. .. .. ... ..|...|+
T Consensus 253 ~~-~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 330 (372)
T 1k8k_C 253 IT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVS 330 (372)
T ss_dssp EE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEE
T ss_pred ec-CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcc
Confidence 99 66766666 999999999866 21 00 111 25889999
Q ss_pred EEEEe-cCC---CEEEEEeCCCcEEEEeCCCCC
Q 005352 534 SACFT-SDG---KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 534 ~l~~s-~dg---~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+++|. ++| .+|+||+.||.|++|++.+++
T Consensus 331 ~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 331 QISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred eeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 99976 666 999999999999999987754
No 81
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-30 Score=269.44 Aligned_cols=283 Identities=17% Similarity=0.245 Sum_probs=230.6
Q ss_pred eecccCcceeeec-CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 199 VVDKQGEGERVRL-NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 199 ~~~~~~~~~~~~~-~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
+..|.+.+.++.+ ++..+++++.|+.|+||+..... ....+..|.+.|.+++|+|++++|++|+.||.|++|
T Consensus 14 l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 14 LKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQW-------LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp ECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSE-------EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred hhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCE-------EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 3456777776665 45678889999999999975432 124567799999999999999999999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
++..... .+++..+.+|...|
T Consensus 87 ~~~~~~~-----------------------------------------------------------~~~~~~~~~~~~~i 107 (313)
T 3odt_A 87 PLFATSG-----------------------------------------------------------EDPLYTLIGHQGNV 107 (313)
T ss_dssp ETTCCTT-----------------------------------------------------------SCC-CEECCCSSCE
T ss_pred EeeecCC-----------------------------------------------------------CCcccchhhcccCE
Confidence 9865421 03455678899999
Q ss_pred EEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec-C
Q 005352 358 LDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-I 435 (701)
Q Consensus 358 ~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~ 435 (701)
.+++|. .++|++++.|+.|++|| .++.+..+. |...+.+++|.|.++++|++++.||.|++||.... ...... +
T Consensus 108 ~~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~ 183 (313)
T 3odt_A 108 CSLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV-IKTFSGIH 183 (313)
T ss_dssp EEEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-EEEECSSC
T ss_pred EEEEec-CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce-EEEEeccC
Confidence 999993 34999999999999999 566666665 89999999999878999999999999999994332 223333 7
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...+.+++|+|++. +++++.+|.|++||+++++.... ...+...|++++|+| ++ .+++++.|+.|++||
T Consensus 184 ~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd 252 (313)
T 3odt_A 184 NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT--------YEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWS 252 (313)
T ss_dssp SSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE--------EECCSSCEEEEEECT-TS-CEEEEETTSEEEEEC
T ss_pred cccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh--------hhcCCceEEEEEEec-CC-CEEEEecCCEEEEEE
Confidence 88999999999998 99999999999999998765432 224567899999999 44 699999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+.+.........|...|.+++|+|+++ +++++.||.|++|++.+++.
T Consensus 253 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 253 KENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp TTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred CCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 987766666566888999999999998 66799999999999988763
No 82
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.1e-32 Score=288.67 Aligned_cols=285 Identities=12% Similarity=0.151 Sum_probs=212.8
Q ss_pred cCccee--eecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEee
Q 005352 203 QGEGER--VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (701)
Q Consensus 203 ~~~~~~--~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 280 (701)
++.+.+ +++++..+++++.|+.|+||+...... .....+.+|.+.|++++|+|++++|++|+.|+.|++||+.
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-----KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 344544 455567788899999999999864321 2234577899999999999999999999999999999998
Q ss_pred cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEE
Q 005352 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (701)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 360 (701)
+++.. .+...+.+|...|.++
T Consensus 86 ~~~~~-----------------------------------------------------------~~~~~~~~~~~~v~~~ 106 (377)
T 3dwl_C 86 PDGTW-----------------------------------------------------------KQTLVLLRLNRAATFV 106 (377)
T ss_dssp ---CC-----------------------------------------------------------CCEEECCCCSSCEEEE
T ss_pred CCCce-----------------------------------------------------------eeeeEecccCCceEEE
Confidence 75400 2345567899999999
Q ss_pred EEecCC-eEEEEECCCcEEEEECCCCee---eeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC--------
Q 005352 361 SWSKNN-YLLSASIDKTVRLWRVGNDHC---LRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-------- 426 (701)
Q Consensus 361 ~~s~~~-~l~s~s~dg~I~iWd~~~~~~---~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-------- 426 (701)
+|+|++ +|++++.|+.|++||+.+++. ...+. |...|++++|+| ++++|++++.|+.|++||+..
T Consensus 107 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 107 RWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred EECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 999998 999999999999999998873 55554 899999999999 999999999999999999852
Q ss_pred ----------CcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 427 ----------CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 427 ----------~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
++.+..+.|...|++++|+|++++|++++.||.|++||+.++..... .......+...|.+++|+|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~v~~~~~s~ 261 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR----ALITVKLSQLPLRSLLWAN 261 (377)
T ss_dssp SCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE----ECCCEECSSSCEEEEEEEE
T ss_pred ccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce----eeEeecCCCCceEEEEEcC
Confidence 33444448889999999999999999999999999999998764211 1112344667899999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCccc--------------------------------------eeee--------------
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVI--------------------------------------GKYK-------------- 524 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~--------------------------------------~~~~-------------- 524 (701)
++.+|++++.++.+ +|+..... ..+.
T Consensus 262 -~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 339 (377)
T 3dwl_C 262 -ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSL 339 (377)
T ss_dssp -TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCC
T ss_pred -CCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhcccccccccc
Confidence 67888777665555 66653110 0000
Q ss_pred cccCCCCeEEEEEecCC-C---EEEEEeCCCcEEEEeC
Q 005352 525 GLRRSGNQLSACFTSDG-K---HIVSAGEDSNVYMWNC 558 (701)
Q Consensus 525 ~~~~~~~v~~l~~s~dg-~---~l~sgs~Dg~I~iWd~ 558 (701)
...|...|+++++.+.. . .|+||+.||.|+|||+
T Consensus 340 ~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 340 PTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred CccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 01288899999976643 3 6999999999999985
No 83
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-30 Score=283.14 Aligned_cols=277 Identities=19% Similarity=0.315 Sum_probs=223.3
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
+.++.+.+.+++.+.|++|+||+....... ....+.+|...|++|+|+|+|++||+|+.||.|+|||+.+++.
T Consensus 109 ~~l~wS~~n~lAvgld~tV~lWd~~tg~~~-----~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-- 181 (420)
T 4gga_A 109 NLVDWSSGNVLAVALDNSVYLWSASSGDIL-----QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-- 181 (420)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETTTCCEE-----EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--
T ss_pred eeEEECCCCEEEEEeCCEEEEEECCCCCEE-----EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE--
Confidence 345555566677777999999997653211 1123457889999999999999999999999999999988753
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
+..+.+|...|.+++|++ .
T Consensus 182 ------------------------------------------------------------~~~~~~h~~~v~~~s~~~-~ 200 (420)
T 4gga_A 182 ------------------------------------------------------------LRNMTSHSARVGSLSWNS-Y 200 (420)
T ss_dssp ------------------------------------------------------------EEEECCCSSCEEEEEEET-T
T ss_pred ------------------------------------------------------------EEEEeCCCCceEEEeeCC-C
Confidence 345678999999988753 3
Q ss_pred eEEEEECCCcEEEEECCCCe-eeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE-----EEEecCCCcE
Q 005352 367 YLLSASIDKTVRLWRVGNDH-CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-----VDWVDIRQIV 439 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~-~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~-----~~~~~~~~~i 439 (701)
.|++|+.|+.+++||..... .+..+. |...+.++.|+| ++.++++++.|+.+++|+..+++. .....+...|
T Consensus 201 ~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V 279 (420)
T 4gga_A 201 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV 279 (420)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCE
T ss_pred EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCce
Confidence 89999999999999988654 344444 899999999999 999999999999999999987642 3455688899
Q ss_pred EEEEEeeCCCe-EEE--EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE--CCCcEEEE
Q 005352 440 TAVCYRPDGQG-GIV--GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC--ADSQVRIL 514 (701)
Q Consensus 440 ~~i~~sp~g~~-l~~--gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s--~dg~I~iw 514 (701)
.+++|+|.+.. +++ |+.|+.|++||+.++....... ....+.++.|+| ++..+++++ .|+.|+||
T Consensus 280 ~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~---------~~~~v~~~~~~~-~~~~lv~~sg~~d~~I~iw 349 (420)
T 4gga_A 280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD---------AHSQVCSILWSP-HYKELISGHGFAQNQLVIW 349 (420)
T ss_dssp EEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE---------CSSCEEEEEEET-TTTEEEEEECTTTCCEEEE
T ss_pred eeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec---------cccceeeeeecC-CCCeEEEEEecCCCEEEEE
Confidence 99999997654 444 4579999999999987653221 235689999999 566666554 69999999
Q ss_pred eCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 515 QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|..+........+|...|++++|+|+|++|+||+.|++|+|||+.+..
T Consensus 350 d~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 350 KYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999877777777799999999999999999999999999999998755
No 84
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-32 Score=299.29 Aligned_cols=284 Identities=13% Similarity=0.063 Sum_probs=211.4
Q ss_pred cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC------CCEEEEEeCCCcEEEEEeecCeeeee
Q 005352 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD------GQYLASAGDDGVVRLWQVVEDERLTE 287 (701)
Q Consensus 214 ~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g~~Lasgs~Dg~I~iWd~~~~~~~~~ 287 (701)
..+++++.|++|+||++....... .....+.+|.+.|++|+|+|+ +.+||+|+.||+|+|||+.++.....
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~---~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~ 250 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHC---VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH 250 (524)
T ss_dssp --------CEEEEEEEEETTTCCE---EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred hhhccCCCCceEEEEEccCCCCCc---eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence 346778899999999985432111 112346678999999999997 57999999999999999976531100
Q ss_pred ecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCe
Q 005352 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNY 367 (701)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~ 367 (701)
.. .....+...+.+|...|++++|++++.
T Consensus 251 ~~---------------------------------------------------~~~~~p~~~l~~h~~~v~sv~~s~~~~ 279 (524)
T 2j04_B 251 VF---------------------------------------------------KMCEKPSLTLSLADSLITTFDFLSPTT 279 (524)
T ss_dssp EE---------------------------------------------------ECCCSCSEEECCTTTCEEEEEESSSSE
T ss_pred cc---------------------------------------------------eeecCceEEEEcCCCCEEEEEecCCCe
Confidence 00 000145567889999999999998779
Q ss_pred EEEEECCCcEEEEECCCCe-eeeee-cCCCCeEEE--EEeeCCC-CEEEEEEcCCcEEEEeCCCCcEEE-EecCC--CcE
Q 005352 368 LLSASIDKTVRLWRVGNDH-CLRVF-PHSNYVTCV--HFNPVDD-NYFISGSIDGKVRIWAVLSCHVVD-WVDIR--QIV 439 (701)
Q Consensus 368 l~s~s~dg~I~iWd~~~~~-~~~~~-~h~~~V~~l--~f~p~~~-~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~--~~i 439 (701)
|++|+.||+|++||++++. +...+ .|...|+++ +|+| ++ .+|++|+.|++|+|||+++++... ...|. ..|
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v 358 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNL 358 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSC
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcc
Confidence 9999999999999999764 33444 499999999 4666 76 899999999999999999876543 23333 358
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
.+++|+|+++.+++++.|++|++||+++...... ...|...|++++|+| ++.+|++|+.|++|++||....
T Consensus 359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~--------l~gH~~~V~sva~Sp-~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP--------LVSRETTITAIGVSR-LHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE--------EEECSSCEEEEECCS-SCCBCEEEETTTEEECCBSCSS
T ss_pred cceEeCCCcCeEEEeCCCCcEEEEECccccccee--------eecCCCceEEEEeCC-CCCeEEEEECCCEEEEEechHh
Confidence 8999999999999999999999999998654321 123668899999999 7889999999999999984310
Q ss_pred -----c---------e------------------------------eeecccCCCCeEEEEEecCC---CEEEEEeCCCc
Q 005352 520 -----I---------G------------------------------KYKGLRRSGNQLSACFTSDG---KHIVSAGEDSN 552 (701)
Q Consensus 520 -----~---------~------------------------------~~~~~~~~~~v~~l~~s~dg---~~l~sgs~Dg~ 552 (701)
. . ......|...|.+++|+|++ ..|++|+.||.
T Consensus 430 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~ 509 (524)
T 2j04_B 430 LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGL 509 (524)
T ss_dssp TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSE
T ss_pred hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCce
Confidence 0 0 00112366789999999996 49999999999
Q ss_pred EEEEeCCCC
Q 005352 553 VYMWNCIGH 561 (701)
Q Consensus 553 I~iWd~~~~ 561 (701)
|+||++...
T Consensus 510 vrlw~l~~~ 518 (524)
T 2j04_B 510 LTLEYLSLE 518 (524)
T ss_dssp EEEEECSCC
T ss_pred EEEEEcccc
Confidence 999998754
No 85
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.4e-31 Score=286.45 Aligned_cols=287 Identities=15% Similarity=0.204 Sum_probs=230.0
Q ss_pred eeecCccccc---cccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCe
Q 005352 208 RVRLNEEDAM---FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDE 283 (701)
Q Consensus 208 ~~~~~~~~~~---~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~ 283 (701)
.+..+++..+ .++.+|.|+||++.+..... .....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 3445555433 37889999999986543321 12235778999999999999 99999999999999999998764
Q ss_pred eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe
Q 005352 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (701)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 363 (701)
..... ..++..+.+|...|.+++|+
T Consensus 116 ~~~~~-------------------------------------------------------~~~~~~~~~h~~~v~~~~~~ 140 (402)
T 2aq5_A 116 LVLPL-------------------------------------------------------REPVITLEGHTKRVGIVAWH 140 (402)
T ss_dssp CSSCB-------------------------------------------------------CSCSEEEECCSSCEEEEEEC
T ss_pred Ccccc-------------------------------------------------------CCceEEecCCCCeEEEEEEC
Confidence 21100 14567788999999999999
Q ss_pred cCC--eEEEEECCCcEEEEECCCCeeeeee--c-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe--cCC
Q 005352 364 KNN--YLLSASIDKTVRLWRVGNDHCLRVF--P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIR 436 (701)
Q Consensus 364 ~~~--~l~s~s~dg~I~iWd~~~~~~~~~~--~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~ 436 (701)
|++ +|++++.|++|++||+.+++++..+ . |...|++++|+| ++++|++++.||.|++||+++++.+... .|.
T Consensus 141 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 219 (402)
T 2aq5_A 141 PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE 219 (402)
T ss_dssp SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSC
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCC
Confidence 996 8999999999999999999999888 3 899999999999 9999999999999999999999887554 555
Q ss_pred Cc-EEEEEEeeCCCeEEEE---ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE-EEECCCcE
Q 005352 437 QI-VTAVCYRPDGQGGIVG---SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM-VSCADSQV 511 (701)
Q Consensus 437 ~~-i~~i~~sp~g~~l~~g---s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~-~~s~dg~I 511 (701)
.. +.+++|+|++++|++| +.++.|++||+++....... ....+...+.+++|+| ++.+++ +++.|+.|
T Consensus 220 ~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~v~~~~~s~-~~~~l~~~g~~dg~i 292 (402)
T 2aq5_A 220 GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSL------QELDTSSGVLLPFFDP-DTNIVYLCGKGDSSI 292 (402)
T ss_dssp SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEE------EECCCCSSCEEEEEET-TTTEEEEEETTCSCE
T ss_pred CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceE------EeccCCCceeEEEEcC-CCCEEEEEEcCCCeE
Confidence 54 8999999999999999 78999999999876532111 1123456799999999 566665 55579999
Q ss_pred EEEeCCccc---eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 512 RILQGPNVI---GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 512 ~iwd~~~~~---~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++||+.+.. ..+..+.+...|.+++|+|++.++++ .++.+++|++.++.
T Consensus 293 ~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 293 RYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred EEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 999998654 34444556789999999999998875 56799999998754
No 86
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.7e-29 Score=274.24 Aligned_cols=332 Identities=14% Similarity=0.216 Sum_probs=257.4
Q ss_pred HHHHhHHhhhc-cceeeecccCc-ceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC
Q 005352 184 RVKKRWFSRLR-SLACVVDKQGE-GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD 261 (701)
Q Consensus 184 r~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd 261 (701)
++...|...-. ....+..|.+. +.++.++++.+++++.|+.|+||+..... ....+.+|.+.|++++|+
T Consensus 98 ~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~-- 168 (445)
T 2ovr_B 98 RIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGK-------CLRTLVGHTGGVWSSQMR-- 168 (445)
T ss_dssp HHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCC-------EEEECCCCSSCEEEEEEE--
T ss_pred hhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCc-------EEEEEcCCCCCEEEEEec--
Confidence 34455665432 23334456554 47888999999999999999999976432 124577899999999997
Q ss_pred CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCcccc
Q 005352 262 GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFR 341 (701)
Q Consensus 262 g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (701)
+.+|++|+.||.|++||+.+++.+..+..+.....++.+..+ . ......+..+.+++...
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~----~--------------l~s~s~dg~i~~wd~~~-- 228 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK----R--------------VVSGSRDATLRVWDIET-- 228 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT----E--------------EEEEETTSEEEEEESSS--
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC----E--------------EEEEeCCCEEEEEECCC--
Confidence 669999999999999999999888887766655555444210 0 11112233333333221
Q ss_pred ccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcE
Q 005352 342 ILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKV 419 (701)
Q Consensus 342 ~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v 419 (701)
.+.+..+.+|...|.+++| ++ ++++++.|+.|++||+.+++++..+. |...|.+++| ++.++++++.||.|
T Consensus 229 --~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i 301 (445)
T 2ovr_B 229 --GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSI 301 (445)
T ss_dssp --CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCE
T ss_pred --CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeE
Confidence 2567788899999999999 45 99999999999999999999998887 8899999998 67899999999999
Q ss_pred EEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC
Q 005352 420 RIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (701)
Q Consensus 420 ~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~ 498 (701)
++||+++++.+. ...|...+.++.+ +++.+++|+.||.|++||+++++.... ......+...|++++|+
T Consensus 302 ~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~v~~~~~~--- 371 (445)
T 2ovr_B 302 RVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQT-----LQGPNKHQSAVTCLQFN--- 371 (445)
T ss_dssp EEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE-----ECSTTSCSSCEEEEEEC---
T ss_pred EEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEE-----EccCCCCCCCEEEEEEC---
Confidence 999999998774 4467778887776 467999999999999999988765422 11223466889999995
Q ss_pred CCEEEEEECCCcEEEEeCCccceeeec-----ccCCCCeEEEEEecCCCEEEEEeCCCc----EEEEeCCCC
Q 005352 499 SSKVMVSCADSQVRILQGPNVIGKYKG-----LRRSGNQLSACFTSDGKHIVSAGEDSN----VYMWNCIGH 561 (701)
Q Consensus 499 ~~~l~~~s~dg~I~iwd~~~~~~~~~~-----~~~~~~v~~l~~s~dg~~l~sgs~Dg~----I~iWd~~~~ 561 (701)
+.++++++.||.|++||+.+....... ..+...|.+++|+|++.+|++|+.||. |.+||++..
T Consensus 372 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 372 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 479999999999999999865544333 357889999999999999999999998 999999864
No 87
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.98 E-value=1.4e-31 Score=284.38 Aligned_cols=251 Identities=11% Similarity=0.053 Sum_probs=186.0
Q ss_pred CCcEEEEEEccCCCEEEEEeCCC-------cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 250 DGSILTMKFSPDGQYLASAGDDG-------VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg-------~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.-||++++|+|||++|++||.|. .|++|++..........+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~-------------------------------- 61 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF-------------------------------- 61 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE--------------------------------
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeee--------------------------------
Confidence 35899999999999999997643 599999976532110000
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEE-----------EEECCCcEEEEECCCCeeee--
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL-----------SASIDKTVRLWRVGNDHCLR-- 389 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~-----------s~s~dg~I~iWd~~~~~~~~-- 389 (701)
.......+.+|...|.++++.++ .++ +++.|+++++|++.......
T Consensus 62 --------------------~~~~~~~l~~~~~~v~s~~~~~~-~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~ 120 (365)
T 4h5i_A 62 --------------------HILSEFALEDNDDSPTAIDASKG-IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEF 120 (365)
T ss_dssp --------------------EEEEEEECCTTSCCCCEEEEETT-EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEE
T ss_pred --------------------eeeeEEEccCCCCceEEEEeCCC-EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEE
Confidence 00011235677788888877543 333 34567889999986653211
Q ss_pred --ee------cCCCCeEEEEEeeCCCCEEEEEE--cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCc
Q 005352 390 --VF------PHSNYVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGD 459 (701)
Q Consensus 390 --~~------~h~~~V~~l~f~p~~~~~l~sgs--~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~ 459 (701)
.. .+..++.+++|+| +++++++++ .|++|+|||+.+++.+....+...|.+++|+|+|+++++++.+ .
T Consensus 121 ~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~ 198 (365)
T 4h5i_A 121 LTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-S 198 (365)
T ss_dssp EEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-C
T ss_pred eeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-e
Confidence 11 1456799999999 999887554 6899999999999999888899999999999999999999855 5
Q ss_pred EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC----cEEEEeCCccce----eeecccCCCC
Q 005352 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS----QVRILQGPNVIG----KYKGLRRSGN 531 (701)
Q Consensus 460 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg----~I~iwd~~~~~~----~~~~~~~~~~ 531 (701)
+.+|+..++..... .....+...|.+++|+| ++..+++++.|+ .+++|+...... ......|...
T Consensus 199 ~~~~~~~~~~~~~~------~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 271 (365)
T 4h5i_A 199 LEVISTVTGSCIAR------KTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKG 271 (365)
T ss_dssp EEEEETTTCCEEEE------ECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSC
T ss_pred EEEEEeccCcceee------eecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCC
Confidence 66666665554321 12344667899999999 788999988877 578888764332 2334458889
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 532 QLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 532 v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|++++|+|+|++||+|+.|+.|+|||+.+++
T Consensus 272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 272 ITSMDVDMKGELAVLASNDNSIALVKLKDLS 302 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred eEeEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence 9999999999999999999999999987764
No 88
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.8e-31 Score=287.25 Aligned_cols=298 Identities=9% Similarity=0.092 Sum_probs=226.0
Q ss_pred cccCcceeeec---CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 201 DKQGEGERVRL---NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 201 ~~~~~~~~~~~---~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
.|.+.+.++.+ ++..+++++.|+.|+||+........ ........+|.+.|++|+|+|++++|++|+.||.|++|
T Consensus 61 ~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw 138 (437)
T 3gre_A 61 NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE--VYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVL 138 (437)
T ss_dssp TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC--CCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc--ccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 35567776655 44678889999999999975421111 11111122599999999999999999999999999999
Q ss_pred Eee---cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEE--cC
Q 005352 278 QVV---EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF--HG 352 (701)
Q Consensus 278 d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 352 (701)
|+. +++....... ..+..+ ..
T Consensus 139 d~~~~~~~~~~~~~~~------------------------------------------------------~~i~~~~~~~ 164 (437)
T 3gre_A 139 KVNHYQQESEVKFLNC------------------------------------------------------ECIRKINLKN 164 (437)
T ss_dssp EEEEEEETTEEEEEEE------------------------------------------------------EEEEEEEGGG
T ss_pred EeccccCCceeecccc------------------------------------------------------ceeEEEEccC
Confidence 995 3332211110 001111 11
Q ss_pred --CccCeEEEE--EecCC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 353 --HSGEILDLS--WSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 353 --h~~~I~~l~--~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
+...+.++. +++++ +|++++.|+.|++||+++++++..+. |...|++++|+| ++++|++|+.||.|++||+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEET
T ss_pred cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEc
Confidence 566788888 55777 99999999999999999999988886 689999999999 8999999999999999999
Q ss_pred CCCcEEEEe--cCCCcEEEEEEee----CCCeEEEEecCCcEEEEECCCCeeeeeeeEEe---e---c----------cc
Q 005352 425 LSCHVVDWV--DIRQIVTAVCYRP----DGQGGIVGSMMGDCRFYNVSDNHLELDAEICV---H---S----------KK 482 (701)
Q Consensus 425 ~~~~~~~~~--~~~~~i~~i~~sp----~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~---~---~----------~~ 482 (701)
++++.+... .+...|++++|+| ++.+|++|+.||.|++||+++++......... . . ..
T Consensus 244 ~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (437)
T 3gre_A 244 RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNF 323 (437)
T ss_dssp TTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCC
T ss_pred CCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccccee
Confidence 999887654 6777899996665 67899999999999999999887544322100 0 0 00
Q ss_pred --CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeeccc---------------------------------
Q 005352 483 --KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLR--------------------------------- 527 (701)
Q Consensus 483 --~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~--------------------------------- 527 (701)
..+...|++++|++ +.+|++++.|+.|++||+.+.........
T Consensus 324 ~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (437)
T 3gre_A 324 CGIRSLNALSTISVSN--DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVD 401 (437)
T ss_dssp CCCCSGGGGCCEEEET--TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC--------
T ss_pred cccccCCceEEEEECC--ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccC
Confidence 12567799999993 58999999999999999876443322221
Q ss_pred ----CCCCeEEEEEecC--CCEEEEEeCCCcEEEEe
Q 005352 528 ----RSGNQLSACFTSD--GKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 528 ----~~~~v~~l~~s~d--g~~l~sgs~Dg~I~iWd 557 (701)
|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 402 ~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 402 DSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 7889999999998 78999999999999995
No 89
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=5.7e-30 Score=265.43 Aligned_cols=277 Identities=19% Similarity=0.308 Sum_probs=220.0
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
+.++.+.+.+++.+.|++|+|||....... ....+.+|...|++|+|+|++++||+|+.||+|++|++.+++.
T Consensus 29 ~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~-----~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-- 101 (318)
T 4ggc_A 29 NLVDWSSGNVLAVALDNSVYLWSASSGDIL-----QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-- 101 (318)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETTTCCEE-----EEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--
T ss_pred eEEEECCCCEEEEEeCCEEEEEECCCCCEE-----EEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee--
Confidence 445566666777778999999997643211 1123457899999999999999999999999999999988753
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
+..+.+|...+.++.+.+ .
T Consensus 102 ------------------------------------------------------------~~~~~~h~~~~~~~~~~~-~ 120 (318)
T 4ggc_A 102 ------------------------------------------------------------LRNMTSHSARVGSLSWNS-Y 120 (318)
T ss_dssp ------------------------------------------------------------EEEEECCSSCEEEEEEET-T
T ss_pred ------------------------------------------------------------EEEecCccceEEEeecCC-C
Confidence 345567888887766542 2
Q ss_pred eEEEEECCCcEEEEECCCCee-eeee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE-----EEEecCCCcE
Q 005352 367 YLLSASIDKTVRLWRVGNDHC-LRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-----VDWVDIRQIV 439 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~-~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~-----~~~~~~~~~i 439 (701)
.+++++.++.+++|+...... +..+ .|...+.++.+.+ ++++|++++.|+.|++||+++++. .....+...|
T Consensus 121 ~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v 199 (318)
T 4ggc_A 121 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV 199 (318)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCE
T ss_pred EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCce
Confidence 899999999999999887643 3333 4899999999999 999999999999999999987653 2445677889
Q ss_pred EEEEEeeCCCeEE---EEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE--CCCcEEEE
Q 005352 440 TAVCYRPDGQGGI---VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC--ADSQVRIL 514 (701)
Q Consensus 440 ~~i~~sp~g~~l~---~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s--~dg~I~iw 514 (701)
.+++++|++..++ +++.++.|++||......... ..+...+..+.|+| .+..+++++ .|+.|++|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iw 269 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA---------VDAHSQVCSILWSP-HYKELISGHGFAQNQLVIW 269 (318)
T ss_dssp EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE---------EECSSCEEEEEEET-TTTEEEEEECTTTCCEEEE
T ss_pred EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc---------ccceeeeeeeeecc-cccceEEEEEcCCCEEEEE
Confidence 9999999776443 566789999999988765321 12346689999999 455555544 69999999
Q ss_pred eCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 515 QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|+.+.........|...|++++|+|+|++|+||+.||+|+|||+.+..
T Consensus 270 d~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 270 KYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999877776666799999999999999999999999999999997653
No 90
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=2.3e-30 Score=273.69 Aligned_cols=286 Identities=16% Similarity=0.277 Sum_probs=224.5
Q ss_pred ceeccCCCcEEEEEEccC---CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccccee
Q 005352 244 QEIQAHDGSILTMKFSPD---GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspd---g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (701)
+.+++|.+.|++|+|+|+ |++|++|+.||.|+|||+.+...
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~------------------------------------ 76 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ------------------------------------ 76 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC------------------------------------
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc------------------------------------
Confidence 457889999999999999 69999999999999999986320
Q ss_pred eEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEE
Q 005352 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTC 399 (701)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~ 399 (701)
.....+.+|...|.+++|+|++ +|++++.||.|++||+.+++.+....|...|++
T Consensus 77 ------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~ 132 (368)
T 3mmy_A 77 ------------------------TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKT 132 (368)
T ss_dssp ------------------------EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEE
T ss_pred ------------------------eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEE
Confidence 1124567899999999999999 999999999999999999999998889999999
Q ss_pred EEE--eeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 400 VHF--NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 400 l~f--~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
++| +| ++++|++++.||.|++||+++++.+........+.++.+.+ ..+++++.++.+++|+++.......
T Consensus 133 ~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~---- 205 (368)
T 3mmy_A 133 IHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFR---- 205 (368)
T ss_dssp EEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEE----
T ss_pred EEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--CeeEEEeCCCcEEEEEeccccchhh----
Confidence 999 77 88899999999999999999998887777777777777664 5889999999999999987654321
Q ss_pred eecccCCCCCCeeEEEEecCCCC----EEEEEECCCcEEEEeCCcc---ceeeecccCCC------------CeEEEEEe
Q 005352 478 VHSKKKAPCKRITGFQFLPQDSS----KVMVSCADSQVRILQGPNV---IGKYKGLRRSG------------NQLSACFT 538 (701)
Q Consensus 478 ~~~~~~~~~~~i~~l~~~p~~~~----~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~------------~v~~l~~s 538 (701)
.........+.++.+.+ +.. .+++++.|+.|++||+... ........|.. .|.+++|+
T Consensus 206 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 282 (368)
T 3mmy_A 206 --RIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH 282 (368)
T ss_dssp --ECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC
T ss_pred --hccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe
Confidence 11223334566666665 233 3999999999999999754 22222222333 79999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCC
Q 005352 539 SDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPA 618 (701)
Q Consensus 539 ~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~ 618 (701)
|++++|++++.||.|++||+.+++.. ..+ ......+..++|+|+
T Consensus 283 p~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~----------------------------~~~~~~v~~~~~s~~ 326 (368)
T 3mmy_A 283 PVHGTLATVGSDGRFSFWDKDARTKL--------KTS----------------------------EQLDQPISACCFNHN 326 (368)
T ss_dssp TTTCCEEEEETTSCEEEEETTTTEEE--------EEC----------------------------CCCSSCEEEEEECTT
T ss_pred cCCCEEEEEccCCeEEEEECCCCcEE--------EEe----------------------------cCCCCCceEEEECCC
Confidence 99999999999999999999876521 010 011335667788887
Q ss_pred ccccCccccccCCCCcccCCC
Q 005352 619 RFSLGQEYVFESFPKGCATWP 639 (701)
Q Consensus 619 ~~~~~~~~~~~s~d~~~~~W~ 639 (701)
+..+++++.|+..+.|.
T Consensus 327 ----g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 327 ----GNIFAYASSYDWSKGHE 343 (368)
T ss_dssp ----SSCEEEEECCCSTTCGG
T ss_pred ----CCeEEEEeccccccccc
Confidence 67788888777655444
No 91
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=5.3e-30 Score=275.24 Aligned_cols=296 Identities=19% Similarity=0.265 Sum_probs=234.4
Q ss_pred CCeEEEcCCccCeEEEEEec-CC-eEEEEECCCcEEEEECCCCeeeeeec--------------CCCCeEEEEEeeCCCC
Q 005352 345 KPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP--------------HSNYVTCVHFNPVDDN 408 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~-~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--------------h~~~V~~l~f~p~~~~ 408 (701)
+....+.+|.+.|++++|+| ++ +|++++.||.|++||+.++.....+. |...|++++|+|.++.
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 55667789999999999999 88 99999999999999999887665553 8899999999996778
Q ss_pred EEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeC---CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 409 YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD---GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 409 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~---g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
+|++++.||.|++||+.+++......+...+.++++.|. +..+++++.+|.|++||+++++.... ...+
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~--------~~~~ 185 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI--------LQGH 185 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE--------ECCC
T ss_pred EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee--------ecCC
Confidence 999999999999999999999988889999999999994 45999999999999999987754321 2346
Q ss_pred CCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec----------------ccCCCCeEEEEEecCCCEEEEEeC
Q 005352 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG----------------LRRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~----------------~~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
...|.+++|+|++..++++++.|+.|++||++........ ..|...|.+++|+|++++|++++.
T Consensus 186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 6889999999955557999999999999998754321111 347889999999999999999999
Q ss_pred CCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcccccc
Q 005352 550 DSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFE 629 (701)
Q Consensus 550 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~ 629 (701)
||.|++||+.+++.......... .. ..........+. ....++..
T Consensus 266 dg~i~vwd~~~~~~~~~~~~~~~-------------------------------~~-~~~~~~~~~~~~---~~~~~~~~ 310 (408)
T 4a11_B 266 DNRMRLWNSSNGENTLVNYGKVC-------------------------------NN-SKKGLKFTVSCG---CSSEFVFV 310 (408)
T ss_dssp TSCEEEEETTTCCBCCCCCCCCC-------------------------------CC-CSSCCCCEECCS---SSSCEEEE
T ss_pred CCeEEEEECCCCccceecccccc-------------------------------cc-ccccceeEEecC---CCceEEEE
Confidence 99999999998763211100000 00 000000111111 24456666
Q ss_pred CCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEeec
Q 005352 630 SFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNY 695 (701)
Q Consensus 630 s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~~ 695 (701)
+.++.+++|+......+..+.+| .+.+.+++++++ +.+|+||+.||.|++|+.-
T Consensus 311 ~~~~~i~v~d~~~~~~~~~~~~~-----------~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 311 PYGSTIAVYTVYSGEQITMLKGH-----------YKTVDCCVFQSN-FQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp EETTEEEEEETTTCCEEEEECCC-----------SSCEEEEEEETT-TTEEEEEETTSCEEEEEEC
T ss_pred ecCCEEEEEECcCCcceeeeccC-----------CCeEEEEEEcCC-CCEEEEECCCCeEEEEeCC
Confidence 78899999999988887777666 467888889998 9999999999999999853
No 92
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=6.9e-30 Score=278.17 Aligned_cols=273 Identities=18% Similarity=0.385 Sum_probs=223.1
Q ss_pred cccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEee
Q 005352 201 DKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (701)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 280 (701)
.+...+.++.++++.+++|+.|+.|+||+..... ....+.+|.+.|++++| ++++|++|+.||.|++||+.
T Consensus 131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE-------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp SSCCCEEEEECCSSEEEEEESSSCEEEEESSSCC-------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred CCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCe-------EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 3445678899999999999999999999975432 22457789999999999 78899999999999999998
Q ss_pred cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEE
Q 005352 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (701)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 360 (701)
+++ .+..+.+|...|.++
T Consensus 202 ~~~--------------------------------------------------------------~~~~~~~h~~~v~~l 219 (435)
T 1p22_A 202 TGE--------------------------------------------------------------MLNTLIHHCEAVLHL 219 (435)
T ss_dssp SCC--------------------------------------------------------------EEEEECCCCSCEEEE
T ss_pred CCc--------------------------------------------------------------EEEEEcCCCCcEEEE
Confidence 764 344567799999999
Q ss_pred EEecCCeEEEEECCCcEEEEECCCCeee---eee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecC
Q 005352 361 SWSKNNYLLSASIDKTVRLWRVGNDHCL---RVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDI 435 (701)
Q Consensus 361 ~~s~~~~l~s~s~dg~I~iWd~~~~~~~---~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~ 435 (701)
+|++ +++++++.||+|++||+.++... ..+ .|...|.+++| ++++|++|+.||.|++||+++++.+. ...|
T Consensus 220 ~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 295 (435)
T 1p22_A 220 RFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 295 (435)
T ss_dssp ECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC
Confidence 9973 49999999999999999988765 333 38899999999 56899999999999999999998774 4568
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...|.++++ +++.+++|+.||.|++||+++++.... ...|...|.+++| ++.+|++|+.||.|++||
T Consensus 296 ~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~--------~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 296 KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV--------LEGHEELVRCIRF---DNKRIVSGAYDGKIKVWD 362 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE--------ECCCSSCEEEEEC---CSSEEEEEETTSCEEEEE
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEE--------EeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEE
Confidence 889999988 467999999999999999998765432 2346678999988 568999999999999999
Q ss_pred CCccc---------eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 516 GPNVI---------GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 516 ~~~~~---------~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+.... .......|...|.+++| ++.+|++|+.||.|++||+.+...
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 363 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp HHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred CCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 86433 33444558899999999 788999999999999999988763
No 93
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=6.8e-30 Score=267.35 Aligned_cols=299 Identities=13% Similarity=0.140 Sum_probs=214.1
Q ss_pred EEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC----eeeeeec-CCCCeEEEEEeeC-CCCEEEEEEcCCcEE
Q 005352 348 HEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND----HCLRVFP-HSNYVTCVHFNPV-DDNYFISGSIDGKVR 420 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~----~~~~~~~-h~~~V~~l~f~p~-~~~~l~sgs~dg~v~ 420 (701)
..+.+|.+.|++++|+|++ +|++++.||.|++||+.++ +.+..+. |...|++++|+|. ++++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 4568999999999999999 9999999999999999876 3445554 8999999999984 489999999999999
Q ss_pred EEeCCCCc----------EEEEecCCCcEEEEEEeeC--CCeEEEEecCCcEEEEECCCCeeeeeeeEEe-----ecccC
Q 005352 421 IWAVLSCH----------VVDWVDIRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAEICV-----HSKKK 483 (701)
Q Consensus 421 iwd~~~~~----------~~~~~~~~~~i~~i~~sp~--g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~-----~~~~~ 483 (701)
+||+.+++ ......|...|.+++|+|+ +++|++++.||.|++||+++.+......... .....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99998863 3355578899999999999 9999999999999999998776433222111 11123
Q ss_pred CCCCCeeEEEEecC--CCCEEEEEECCCcEEEEeCCccce--eeecccCCCCeEEEEEecCC----CEEEEEeCCCcEEE
Q 005352 484 APCKRITGFQFLPQ--DSSKVMVSCADSQVRILQGPNVIG--KYKGLRRSGNQLSACFTSDG----KHIVSAGEDSNVYM 555 (701)
Q Consensus 484 ~~~~~i~~l~~~p~--~~~~l~~~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg----~~l~sgs~Dg~I~i 555 (701)
.+...+.++.|+|+ ++..+++++.++.+.+|+...... ......|...|.+++|+|++ ++|++|+.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 56678999999995 489999999999998888765433 34445588999999999998 89999999999999
Q ss_pred EeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcc
Q 005352 556 WNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGC 635 (701)
Q Consensus 556 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~ 635 (701)
||+.++........ .. .. .......+.................+
T Consensus 245 wd~~~~~~~~~~~~-~~--------~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (351)
T 3f3f_A 245 FKITEKLSPLASEE-SL--------TN---------------------------SNMFDNSADVDMDAQGRSDSNTEEKA 288 (351)
T ss_dssp EEEEECC-------------------------------------------------------------------------
T ss_pred EeCCCCcCccccCC-cc--------cc---------------------------eeccCCCcccccccccccccccceee
Confidence 99987653211000 00 00 00000011100111111223344455
Q ss_pred cCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 636 ATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 636 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
.+|+......+..+.+| ...|.+++++++ +.+|+||+.||.|++|+.
T Consensus 289 ~~~~~~~~~~~~~~~~h-----------~~~v~~~~~s~~-~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 289 ELQSNLQVELLSEHDDH-----------NGEVWSVSWNLT-GTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp --CCSEEEEEEEEECTT-----------SSCEEEEEECSS-SCCEEEEETTSCEEEEEE
T ss_pred eecccccccEEEEEecc-----------cccEEEEEEcCC-CCEEEEecCCCcEEEEec
Confidence 67776666666666555 467888899998 999999999999999984
No 94
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=6.8e-30 Score=278.56 Aligned_cols=261 Identities=16% Similarity=0.303 Sum_probs=197.4
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
.|.+.|++|+|+|+|++||+|+.||.|+||++.+++........
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~------------------------------------ 69 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRG------------------------------------ 69 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCC------------------------------------
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccc------------------------------------
Confidence 37899999999999999999999999999999876421100000
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCc------------cCeEEEEEecCC---eEEEEECCCcEEEEECCCCeee----
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHS------------GEILDLSWSKNN---YLLSASIDKTVRLWRVGNDHCL---- 388 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~~~~---- 388 (701)
.-+....+.+|. ..|.+++|+|++ +|++++.|++|++||+.++...
T Consensus 70 ---------------~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~ 134 (447)
T 3dw8_B 70 ---------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGY 134 (447)
T ss_dssp ---------------CEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECC
T ss_pred ---------------ceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCccee
Confidence 002345667887 889999999985 8999999999999999765432
Q ss_pred -----------------------------------eee--cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-CcEE
Q 005352 389 -----------------------------------RVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVV 430 (701)
Q Consensus 389 -----------------------------------~~~--~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-~~~~ 430 (701)
..+ .|...|++++|+| ++++|++| .|+.|++||+.+ ++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~ 212 (447)
T 3dw8_B 135 NLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSF 212 (447)
T ss_dssp SCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEE
T ss_pred cccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCcee
Confidence 122 3899999999999 99999998 799999999984 4444
Q ss_pred E--------EecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc--------CCCCCCeeEEE
Q 005352 431 D--------WVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK--------KAPCKRITGFQ 493 (701)
Q Consensus 431 ~--------~~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~--------~~~~~~i~~l~ 493 (701)
. ...|...|++++|+|++ +.|++|+.||.|++||+++..........+.... ..+...|.+++
T Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (447)
T 3dw8_B 213 NIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVK 292 (447)
T ss_dssp EEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEE
T ss_pred eeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEE
Confidence 4 33688899999999998 9999999999999999998764110000111100 01113899999
Q ss_pred EecCCCCEEEEEECCCcEEEEeCCc-cc--eeeecccCCC-------------CeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 494 FLPQDSSKVMVSCADSQVRILQGPN-VI--GKYKGLRRSG-------------NQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 494 ~~p~~~~~l~~~s~dg~I~iwd~~~-~~--~~~~~~~~~~-------------~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
|+| ++.+|++++. +.|++||+.. .. ..+..+.... .+..++|+|++++|++|+.||.|++||
T Consensus 293 ~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 293 FSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFD 370 (447)
T ss_dssp ECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEE
T ss_pred ECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEE
Confidence 999 7899999999 9999999975 32 3333321100 134599999999999999999999999
Q ss_pred CCCCCC
Q 005352 558 CIGHEE 563 (701)
Q Consensus 558 ~~~~~~ 563 (701)
+.+++.
T Consensus 371 ~~~~~~ 376 (447)
T 3dw8_B 371 RNTKRD 376 (447)
T ss_dssp TTTCCE
T ss_pred cCCCcc
Confidence 998763
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.2e-29 Score=265.96 Aligned_cols=282 Identities=11% Similarity=0.069 Sum_probs=227.6
Q ss_pred cccCcceeee--cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCC-EEEEEeCCCcEEEE
Q 005352 201 DKQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLW 277 (701)
Q Consensus 201 ~~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iW 277 (701)
.|.+.+.++. +++..+++++.|+.|+||++....... ....+.+|...|++++|+|+++ +|++|+.||.|++|
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE----EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc----cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 4556666554 455678889999999999986543111 1134558999999999999999 99999999999999
Q ss_pred Ee-ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcC--Cc
Q 005352 278 QV-VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG--HS 354 (701)
Q Consensus 278 d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~ 354 (701)
|+ .+++ ...+.+ |.
T Consensus 85 d~~~~~~---------------------------------------------------------------~~~~~~~~~~ 101 (342)
T 1yfq_A 85 DLIGSPS---------------------------------------------------------------FQALTNNEAN 101 (342)
T ss_dssp CSSSSSS---------------------------------------------------------------EEECBSCCCC
T ss_pred EeccCCc---------------------------------------------------------------eEeccccCCC
Confidence 98 6653 133456 99
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCC---------CeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGN---------DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~---------~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
..|.+++|+| + +|++++.|+.|++||+++ ++++..+.|...|.+++|+| +. +++++.|+.|++||+
T Consensus 102 ~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~ 177 (342)
T 1yfq_A 102 LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRL 177 (342)
T ss_dssp SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS-SE--EEEEESTTEEEEEES
T ss_pred CceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC-Cc--EEEEeCCCeEEEEEC
Confidence 9999999999 7 999999999999999988 77788888999999999998 54 999999999999999
Q ss_pred CC-CcE---EEEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCC------eeeeeeeEEeecc---cCCCCCCee
Q 005352 425 LS-CHV---VDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDN------HLELDAEICVHSK---KKAPCKRIT 490 (701)
Q Consensus 425 ~~-~~~---~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~------~~~~~~~~~~~~~---~~~~~~~i~ 490 (701)
++ +.. .....+...+.+++|+| +++.+++++.+|.|++|+++.. ..... +..+.. ...+...|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~ 255 (342)
T 1yfq_A 178 PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA--FRCHRLNLKDTNLAYPVN 255 (342)
T ss_dssp SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE--EECCCCCTTCCSSCCCEE
T ss_pred CccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee--eecccccccccccceeEE
Confidence 98 542 24446788999999999 9999999999999999999876 22211 111110 012345899
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccC-CCCeEEEEEecCCCEEEEEeCCCc-EEEEeC
Q 005352 491 GFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRR-SGNQLSACFTSDGKHIVSAGEDSN-VYMWNC 558 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-~~~v~~l~~s~dg~~l~sgs~Dg~-I~iWd~ 558 (701)
+++|+| ++.+|++++.|+.|++||+.+.........| ...|.+++ |++++|++++.||. .+.|..
T Consensus 256 ~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 256 SIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred EEEEcC-CCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 999999 7889999999999999999877766666666 88999999 99999999999998 655554
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=5.3e-30 Score=268.74 Aligned_cols=248 Identities=14% Similarity=0.125 Sum_probs=205.6
Q ss_pred eccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEee
Q 005352 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (701)
..+|.+.|++++|+|++++|++|+.||.|+||++.++...
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~---------------------------------------- 46 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN---------------------------------------- 46 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------------------------------------
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------------------------------------
Confidence 3579999999999999999999999999999999875310
Q ss_pred ecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEEC-CCCeeeeeec--CCCCeEEE
Q 005352 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRV-GNDHCLRVFP--HSNYVTCV 400 (701)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~-~~~~~~~~~~--h~~~V~~l 400 (701)
.+...+.+|...|.+++|+|++ +|++++.||.|++||+ .+++...... |...|.++
T Consensus 47 -------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l 107 (342)
T 1yfq_A 47 -------------------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRI 107 (342)
T ss_dssp -------------------EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEE
T ss_pred -------------------ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEE
Confidence 1123345799999999999987 5999999999999999 8888766666 99999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCC---------CcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC-Cee
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLS---------CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD-NHL 470 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~---------~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~-~~~ 470 (701)
+|+| +++|++++.|+.|++||+++ ++.+....+...|.+++|+|++ +++++.++.|++||+++ ...
T Consensus 108 ~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 108 CKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp EEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC
T ss_pred EeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc
Confidence 9998 78999999999999999987 6666666688999999999987 99999999999999987 432
Q ss_pred eeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc------ceeeecccC---------CCCeEEE
Q 005352 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------IGKYKGLRR---------SGNQLSA 535 (701)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~------~~~~~~~~~---------~~~v~~l 535 (701)
.... ....+...+.+++|+|.++.++++++.|+.|++|+.... ........| ...|.++
T Consensus 184 ~~~~------~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (342)
T 1yfq_A 184 NGTI------EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257 (342)
T ss_dssp CCEE------EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE
T ss_pred ccee------eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEE
Confidence 2111 123455689999999834689999999999999998654 333333334 3499999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 536 CFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 536 ~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+|+|++++|++++.||.|++||+.+++
T Consensus 258 ~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 258 EFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp EECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred EEcCCCCEEEEecCCceEEEEcCccHh
Confidence 999999999999999999999998765
No 97
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=6.4e-29 Score=269.23 Aligned_cols=288 Identities=17% Similarity=0.208 Sum_probs=228.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
.+..|+||+++ +||+|. |++|+|||+.+++....
T Consensus 107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~-------------------------------------------- 140 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQL-------------------------------------------- 140 (420)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEE--------------------------------------------
T ss_pred cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEE--------------------------------------------
Confidence 35679999764 777664 99999999988764322
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCE
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~ 409 (701)
..+.+|...|++|+|+|++ +|++|+.||+|+|||+.+++++..+. |...+.+++++ +.+
T Consensus 141 ----------------~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~ 201 (420)
T 4gga_A 141 ----------------LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYI 201 (420)
T ss_dssp ----------------EECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTE
T ss_pred ----------------EEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCE
Confidence 2335688899999999999 99999999999999999999998887 88999998875 579
Q ss_pred EEEEEcCCcEEEEeCCCCcE--EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCC
Q 005352 410 FISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 487 (701)
|++|+.|+.+++||...... .....|...+..+.++|+++++++++.|+.+++|++..++..... ......+..
T Consensus 202 l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~----~~~~~~~~~ 277 (420)
T 4gga_A 202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQG 277 (420)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC----SEEECCCSS
T ss_pred EEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccccee----eeeecccCC
Confidence 99999999999999986543 356678999999999999999999999999999999876532211 111345667
Q ss_pred CeeEEEEecCCCCEEEEEE--CCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe--CCCcEEEEeCCCCCC
Q 005352 488 RITGFQFLPQDSSKVMVSC--ADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG--EDSNVYMWNCIGHEE 563 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs--~Dg~I~iWd~~~~~~ 563 (701)
.|.+++|+|.+..++++++ .|+.|++||+.+........ +...+.++.|+|+++.|++++ .|+.|+|||+.+++.
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~ 356 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 356 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE
Confidence 8999999998888887754 69999999998766555443 557899999999999998875 799999999987752
Q ss_pred CCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccC
Q 005352 564 PAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKL 643 (701)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~ 643 (701)
. ..+ ..+...+..++|+|+ +..+++++.|+++++|+..+.
T Consensus 357 v--------~~l----------------------------~gH~~~V~~l~~spd----g~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 357 V--------AEL----------------------------KGHTSRVLSLTMSPD----GATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp E--------EEE----------------------------CCCSSCEEEEEECTT----SSCEEEEETTTEEEEECCSCS
T ss_pred E--------EEE----------------------------cCCCCCEEEEEEcCC----CCEEEEEecCCeEEEEECCCC
Confidence 1 111 011335677888997 778999999999999998877
Q ss_pred CCCccc
Q 005352 644 PALSQL 649 (701)
Q Consensus 644 ~~~~~~ 649 (701)
.+..+.
T Consensus 397 ~~~~~~ 402 (420)
T 4gga_A 397 DPARRR 402 (420)
T ss_dssp SCC---
T ss_pred Cccchh
Confidence 665443
No 98
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=4.8e-29 Score=271.80 Aligned_cols=325 Identities=16% Similarity=0.238 Sum_probs=219.7
Q ss_pred cCcceee--ecCccccccccccceEEEEEccCccch----hhhcccCceeccCC------------CcEEEEEEccCC--
Q 005352 203 QGEGERV--RLNEEDAMFCSKVQRVKVYHCKKRSKE----LSALYKGQEIQAHD------------GSILTMKFSPDG-- 262 (701)
Q Consensus 203 ~~~~~~~--~~~~~~~~~~~~d~~v~vw~~~~~~~~----~~~~~~~~~l~~H~------------~~I~~l~fspdg-- 262 (701)
.+.+.++ ++++..+++|+.|+.|+||++...... .........+++|. +.|++++|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 3445444 455678889999999999998754310 11112235678898 889999999998
Q ss_pred CEEEEEeCCCcEEEEEeecCeeeeee-cCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCcccc
Q 005352 263 QYLASAGDDGVVRLWQVVEDERLTEV-DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFR 341 (701)
Q Consensus 263 ~~Lasgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (701)
.+|++++.|+.|++|++.++...... ....... .+. .. ..+..+... .+. +..+.
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g-~~~-~~---~~~~~~~~~-----~~~--------------~~~~~ 163 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDG-RYR-DP---TTVTTLRVP-----VFR--------------PMDLM 163 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC----------C---CCCCSCCCC-----EEE--------------EEEEE
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccc-ccc-Cc---ccccceEec-----ccc--------------chhee
Confidence 89999999999999999876543211 1100000 000 00 000000000 000 00000
Q ss_pred ccCCCeEEE-cCCccCeEEEEEecCC-eEEEEECCCcEEEEECC-CCeeeeee--------cCCCCeEEEEEeeCCC-CE
Q 005352 342 ILEKPLHEF-HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG-NDHCLRVF--------PHSNYVTCVHFNPVDD-NY 409 (701)
Q Consensus 342 ~~~~~~~~~-~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~-~~~~~~~~--------~h~~~V~~l~f~p~~~-~~ 409 (701)
....+...+ .+|...|.+++|+|++ +|++| .|++|++||+. .++++..+ .|...|++++|+| ++ ++
T Consensus 164 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~ 241 (447)
T 3dw8_B 164 VEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNT 241 (447)
T ss_dssp EEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTE
T ss_pred eeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcE
Confidence 011223333 6899999999999999 88888 89999999999 45555533 4899999999999 76 99
Q ss_pred EEEEEcCCcEEEEeCCCCcE----E-EEecCCC------------cEEEEEEeeCCCeEEEEecCCcEEEEECCC-Ceee
Q 005352 410 FISGSIDGKVRIWAVLSCHV----V-DWVDIRQ------------IVTAVCYRPDGQGGIVGSMMGDCRFYNVSD-NHLE 471 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~----~-~~~~~~~------------~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~-~~~~ 471 (701)
|++|+.||.|++||+++++. + .+..+.. .|++++|+|++++|++++. +.|++||++. ++..
T Consensus 242 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 242 FVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV 320 (447)
T ss_dssp EEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS
T ss_pred EEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc
Confidence 99999999999999998875 3 3444443 8999999999999999999 9999999986 4432
Q ss_pred eeeeEEeecccCC---------CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceee-e-----------------
Q 005352 472 LDAEICVHSKKKA---------PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY-K----------------- 524 (701)
Q Consensus 472 ~~~~~~~~~~~~~---------~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~-~----------------- 524 (701)
... ..+..... ....+..++|+| ++.+|++++.|+.|++||+.+..... .
T Consensus 321 ~~~--~~~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (447)
T 3dw8_B 321 ETY--QVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKV 397 (447)
T ss_dssp CCE--ESCGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCE
T ss_pred cee--eccccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccc
Confidence 211 11110000 001134589999 78999999999999999987543221 1
Q ss_pred --------------cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 525 --------------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 525 --------------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.......|..++|+|++.+|++++.++ +++|.-
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 398 CASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp ECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 112345789999999999999998775 888864
No 99
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.7e-29 Score=272.03 Aligned_cols=289 Identities=15% Similarity=0.193 Sum_probs=224.8
Q ss_pred cCCCc--EEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEee
Q 005352 248 AHDGS--ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (701)
Q Consensus 248 ~H~~~--I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (701)
+|... +.++.|+ +..+++++.|+.|++||+.+++....+
T Consensus 89 ~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~------------------------------------- 129 (401)
T 4aez_A 89 GIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALA------------------------------------- 129 (401)
T ss_dssp TCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEE-------------------------------------
T ss_pred CCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEee-------------------------------------
Confidence 55554 4445565 456889999999999999877532211
Q ss_pred ecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEe
Q 005352 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFN 403 (701)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~ 403 (701)
...|...|.+++|+|++ +|++++.||.|++||+.+++.+..+. |...|.+++|+
T Consensus 130 ------------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 185 (401)
T 4aez_A 130 ------------------------ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN 185 (401)
T ss_dssp ------------------------ECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE
T ss_pred ------------------------ecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC
Confidence 12378899999999999 99999999999999999999888886 89999999995
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCC-Cc-EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 404 PVDDNYFISGSIDGKVRIWAVLS-CH-VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 404 p~~~~~l~sgs~dg~v~iwd~~~-~~-~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
+++|++++.||.|++||++. .. ......|...|.+++|+|++++|++|+.||.|++||+++......
T Consensus 186 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-------- 254 (401)
T 4aez_A 186 ---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT-------- 254 (401)
T ss_dssp ---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE--------
T ss_pred ---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE--------
Confidence 47999999999999999984 33 335667899999999999999999999999999999998654321
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEE--CCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe--CCCcEEEEe
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSC--ADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG--EDSNVYMWN 557 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs--~Dg~I~iWd 557 (701)
...+...|.+++|+|++..++++++ .|+.|++||+.+....... .+...|.+++|+|++++|++++ .||.|++|+
T Consensus 255 ~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp ECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEE
T ss_pred ecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEe
Confidence 2346678999999997677788776 7999999999866544433 3677899999999999999954 899999999
Q ss_pred CCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccC
Q 005352 558 CIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCAT 637 (701)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~ 637 (701)
+.+++... ... ...+...+..++|+|+ +..+++++.|+.+++
T Consensus 334 ~~~~~~~~------~~~----------------------------~~~h~~~v~~~~~s~d----g~~l~s~~~dg~i~i 375 (401)
T 4aez_A 334 YSSSGLTK------QVD----------------------------IPAHDTRVLYSALSPD----GRILSTAASDENLKF 375 (401)
T ss_dssp EETTEEEE------EEE----------------------------EECCSSCCCEEEECTT----SSEEEEECTTSEEEE
T ss_pred cCCcccee------EEE----------------------------ecCCCCCEEEEEECCC----CCEEEEEeCCCcEEE
Confidence 87754100 000 0011335667888997 678899999999999
Q ss_pred CCCccCCCCccc
Q 005352 638 WPEEKLPALSQL 649 (701)
Q Consensus 638 W~~~~~~~~~~~ 649 (701)
|+......+...
T Consensus 376 w~~~~~~~~~~~ 387 (401)
T 4aez_A 376 WRVYDGDHVKRP 387 (401)
T ss_dssp EECCC-------
T ss_pred EECCCCcccccc
Confidence 999887765543
No 100
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=295.23 Aligned_cols=254 Identities=19% Similarity=0.272 Sum_probs=211.1
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+|.++|++++|+|+|++|++|+.||.|+|||+..+..
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~--------------------------------------- 43 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH--------------------------------------- 43 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---------------------------------------
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---------------------------------------
Confidence 35788999999999999999999999999999999875421
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC--C-eEEEEECCCcEEEEECCCCe--eeeeec-CCCCe
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYV 397 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~~--~~~~~~-h~~~V 397 (701)
+.+..+.+|.+.|++++|+++ + +|++|+.||+|++||+.+++ .+..+. |...|
T Consensus 44 ---------------------~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V 102 (753)
T 3jro_A 44 ---------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 102 (753)
T ss_dssp ---------------------EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ---------------------ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCe
Confidence 234567889999999999987 6 99999999999999999986 444444 89999
Q ss_pred EEEEEeeCC--CCEEEEEEcCCcEEEEeCCCCc---EEEEecCCCcEEEEEEee-------------CCCeEEEEecCCc
Q 005352 398 TCVHFNPVD--DNYFISGSIDGKVRIWAVLSCH---VVDWVDIRQIVTAVCYRP-------------DGQGGIVGSMMGD 459 (701)
Q Consensus 398 ~~l~f~p~~--~~~l~sgs~dg~v~iwd~~~~~---~~~~~~~~~~i~~i~~sp-------------~g~~l~~gs~dg~ 459 (701)
++++|+| + +++|++|+.||.|++||++++. ......|...|.+++|+| ++..+++|+.||.
T Consensus 103 ~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~ 181 (753)
T 3jro_A 103 NSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (753)
T ss_dssp EEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred EEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence 9999999 7 8999999999999999998873 345667889999999999 5899999999999
Q ss_pred EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC--CCEEEEEECCCcEEEEeCCccc-----eeeecccCCCCe
Q 005352 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPNVI-----GKYKGLRRSGNQ 532 (701)
Q Consensus 460 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~--~~~l~~~s~dg~I~iwd~~~~~-----~~~~~~~~~~~v 532 (701)
|++||+++...... .......|...|++++|+|++ +.++++++.||.|++||+.... .......|...|
T Consensus 182 I~iwd~~~~~~~~~----~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 257 (753)
T 3jro_A 182 VKIWKYNSDAQTYV----LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 257 (753)
T ss_dssp EEEEEEETTTTEEE----EEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC
T ss_pred EEEEeccCCcccce----eeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce
Confidence 99999987643221 111234567889999999943 8999999999999999987643 233334478899
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 533 LSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 533 ~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++++|+|+|++|++|+.||.|++|++.++.
T Consensus 258 ~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 258 WRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999999999999999999999999998654
No 101
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=7.3e-29 Score=255.55 Aligned_cols=247 Identities=17% Similarity=0.240 Sum_probs=196.4
Q ss_pred cccCcceee--ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc--CCCEEEEEeCCCcEEE
Q 005352 201 DKQGEGERV--RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRL 276 (701)
Q Consensus 201 ~~~~~~~~~--~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~i 276 (701)
.|.+.+.++ ++++..+++++.|+.|+||+...... .....+.+|.++|++++|+| ++++||||+.|++|+|
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-----EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 466666554 45677899999999999999864321 12356889999999999986 3899999999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
||+.+++. ..+..+.+|...
T Consensus 82 Wd~~~~~~------------------------------------------------------------~~~~~~~~h~~~ 101 (297)
T 2pm7_B 82 WKEENGRW------------------------------------------------------------SQIAVHAVHSAS 101 (297)
T ss_dssp EEBSSSCB------------------------------------------------------------CCCEEECCCSSC
T ss_pred EEcCCCce------------------------------------------------------------EEEEEeecCCCc
Confidence 99876531 233456789999
Q ss_pred eEEEEEecC--C-eEEEEECCCcEEEEECCCCee---eeeecCCCCeEEEEEeeCC-------------CCEEEEEEcCC
Q 005352 357 ILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHC---LRVFPHSNYVTCVHFNPVD-------------DNYFISGSIDG 417 (701)
Q Consensus 357 I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~~~---~~~~~h~~~V~~l~f~p~~-------------~~~l~sgs~dg 417 (701)
|.+++|+|+ + +|++++.|++|++||++++.. .....|...|.+++|+| + +++|++|+.|+
T Consensus 102 v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~~~~~~~~~~~~~l~sgs~D~ 180 (297)
T 2pm7_B 102 VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP-ATIEEDGEHNGTKESRKFVTGGADN 180 (297)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC-CC------------CCEEEEEETTS
T ss_pred eeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC-CcccccccCCCCCCcceEEEEcCCC
Confidence 999999997 6 999999999999999987632 22234899999999999 4 47999999999
Q ss_pred cEEEEeCCCCc----EE-EEecCCCcEEEEEEeeCC---CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCe
Q 005352 418 KVRIWAVLSCH----VV-DWVDIRQIVTAVCYRPDG---QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (701)
Q Consensus 418 ~v~iwd~~~~~----~~-~~~~~~~~i~~i~~sp~g---~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i 489 (701)
+|++||+++++ .. .+..|...|.+++|+|++ ++|++++.|++|++||++........ ... ....+...|
T Consensus 181 ~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~--~~~-~~~~~~~~v 257 (297)
T 2pm7_B 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKK--TLL-KEEKFPDVL 257 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEE--EES-SSSCCSSCE
T ss_pred cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccce--eee-ecccCCCcE
Confidence 99999998764 33 455788999999999985 89999999999999999864311110 011 123456789
Q ss_pred eEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 490 TGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
.+++|+| ++.+|++++.|+.|+||+..
T Consensus 258 ~~~~~s~-~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 258 WRASWSL-SGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEECS-SSCCEEEEETTSCEEEEEEC
T ss_pred EEEEECC-CCCEEEEEcCCCcEEEEEEC
Confidence 9999999 78999999999999999965
No 102
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=3.1e-28 Score=252.37 Aligned_cols=282 Identities=17% Similarity=0.230 Sum_probs=222.8
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccE
Q 005352 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (701)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (701)
..+|+||+++ +||+| .|++|+|||+.+++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-------------------------------------------- 61 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-------------------------------------------- 61 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE--------------------------------------------
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE--------------------------------------------
Confidence 4679999986 67665 5999999999888644322
Q ss_pred EEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEE
Q 005352 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYF 410 (701)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l 410 (701)
.+.+|...|++++|+|++ +|++|+.||+|++||+.+++++..+. |...+.++.+ ++.++
T Consensus 62 ----------------~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l 122 (318)
T 4ggc_A 62 ----------------QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYIL 122 (318)
T ss_dssp ----------------ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEE
T ss_pred ----------------EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEE
Confidence 235688899999999999 99999999999999999999998886 7777777665 56799
Q ss_pred EEEEcCCcEEEEeCCCCcE--EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCC
Q 005352 411 ISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (701)
Q Consensus 411 ~sgs~dg~v~iwd~~~~~~--~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 488 (701)
++++.++.+++|+...... .....|...+..+.+.++++++++++.||.|++||+++++...... .....+...
T Consensus 123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~ 198 (318)
T 4ggc_A 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----QTFTQHQGA 198 (318)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----EEECCCCSC
T ss_pred EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----eeecccCCc
Confidence 9999999999999987643 3566788999999999999999999999999999998765332211 113345578
Q ss_pred eeEEEEecCCCCEEEE--EECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe--CCCcEEEEeCCCCCCC
Q 005352 489 ITGFQFLPQDSSKVMV--SCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG--EDSNVYMWNCIGHEEP 564 (701)
Q Consensus 489 i~~l~~~p~~~~~l~~--~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs--~Dg~I~iWd~~~~~~~ 564 (701)
|..+.++|.+...+.+ ++.++.|++||......... ..+...+..+.|+|++..+++++ .|+.|+|||+.+++..
T Consensus 199 v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~ 277 (318)
T 4ggc_A 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 277 (318)
T ss_dssp EEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred eEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE
Confidence 9999999977766644 45689999999886554443 33778899999999999888765 7999999999877621
Q ss_pred CccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCC
Q 005352 565 AHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLP 644 (701)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~ 644 (701)
..+ ..+...+..++|+|+ +..+++++.|+.+++|+..+++
T Consensus 278 --------~~l----------------------------~gH~~~V~~l~~spd----g~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 278 --------AEL----------------------------KGHTSRVLSLTMSPD----GATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp --------EEE----------------------------CCCSSCEEEEEECTT----SSCEEEEETTTEEEEECCSCCC
T ss_pred --------EEE----------------------------cCCCCCEEEEEEcCC----CCEEEEEecCCeEEEEECCCCC
Confidence 111 012345677888997 6789999999999999987664
No 103
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=9.2e-29 Score=261.41 Aligned_cols=291 Identities=13% Similarity=0.204 Sum_probs=229.9
Q ss_pred ecccCcceeeecCc-----cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcE
Q 005352 200 VDKQGEGERVRLNE-----EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274 (701)
Q Consensus 200 ~~~~~~~~~~~~~~-----~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (701)
..|.+.+.++.+++ ..+++++.|+.|+||++....... ...+.+|.+.|++++|+|++++|++|+.||.|
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v 110 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI-----PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA 110 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE-----EEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee-----EEEeccccCCEEEEEECcCCCEEEEEcCCCcE
Confidence 35677777776665 467889999999999987532221 13577899999999999999999999999999
Q ss_pred EEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc
Q 005352 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (701)
Q Consensus 275 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 354 (701)
++||+.+++.+ .+.+|.
T Consensus 111 ~iwd~~~~~~~---------------------------------------------------------------~~~~~~ 127 (368)
T 3mmy_A 111 KMWDLSSNQAI---------------------------------------------------------------QIAQHD 127 (368)
T ss_dssp EEEETTTTEEE---------------------------------------------------------------EEEECS
T ss_pred EEEEcCCCCce---------------------------------------------------------------eecccc
Confidence 99999876522 234588
Q ss_pred cCeEEEEE--ecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 355 GEILDLSW--SKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 355 ~~I~~l~~--s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
..|.+++| ++++ +|++++.|+.|++||+++++++..+.....+.++.+.+ ..+++++.++.+++|+++......
T Consensus 128 ~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~ 204 (368)
T 3mmy_A 128 APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEF 204 (368)
T ss_dssp SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEE
T ss_pred CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchh
Confidence 99999999 7888 89999999999999999999999998777888887764 588889999999999998765442
Q ss_pred Ee---cCCCcEEEEEEeeCCCe----EEEEecCCcEEEEECCCCee-eeeeeEEeecc------cCCCCCCeeEEEEecC
Q 005352 432 WV---DIRQIVTAVCYRPDGQG----GIVGSMMGDCRFYNVSDNHL-ELDAEICVHSK------KKAPCKRITGFQFLPQ 497 (701)
Q Consensus 432 ~~---~~~~~i~~i~~sp~g~~----l~~gs~dg~v~i~d~~~~~~-~~~~~~~~~~~------~~~~~~~i~~l~~~p~ 497 (701)
.. .....+.++++.++... +++++.+|.|++|+++.... .....+..+.. ...+...|++++|+|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp- 283 (368)
T 3mmy_A 205 RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP- 283 (368)
T ss_dssp EECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-
T ss_pred hhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-
Confidence 21 23456777888776665 99999999999999987632 11111111110 111223699999999
Q ss_pred CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 498 DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++.+|++++.|+.|++||+.+.........|...|.+++|+|+|++|++++.|+..+.|++.+.+
T Consensus 284 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 284 VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence 78999999999999999999877666666789999999999999999999999877777765544
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-29 Score=273.16 Aligned_cols=314 Identities=11% Similarity=0.059 Sum_probs=228.8
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
-...|.+++|+|||+++||++.|++|+ |...++ .+..+......+.|.+.+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg~----------------------- 65 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLEF----------------------- 65 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCCC-----------------------
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCCC-----------------------
Confidence 457899999999999999999999999 654443 2333333344444444331
Q ss_pred CccEEEcCCccccccC-CCeEEEc-CCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCC-----CeEEE
Q 005352 329 ESACVVFPPKVFRILE-KPLHEFH-GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSN-----YVTCV 400 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~-~~~~~~~-~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~-----~V~~l 400 (701)
.+.+++.. +....+. .|...|.+++|+|+| +|++++.||+|++||... ++..+.|.. .|.++
T Consensus 66 --------~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~sv 135 (588)
T 2j04_A 66 --------ENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCF 135 (588)
T ss_dssp --------CCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEE
T ss_pred --------cceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEE
Confidence 11111110 1111112 467889999999999 999999999999999644 666666444 49999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcE-------EEE-----ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHV-------VDW-----VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~-------~~~-----~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
+|+| ++++|++|+.||+|+|||+.++.. +.. .+|...|.+++|+|+| +++++.|+.|++||+.++
T Consensus 136 afSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 136 EWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp EECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSS
T ss_pred EEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCC
Confidence 9999 999999999999999999998852 333 4466799999999999 888999999999999876
Q ss_pred eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce-eeecccCCCCeEEEEE--ecCCCEEE
Q 005352 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG-KYKGLRRSGNQLSACF--TSDGKHIV 545 (701)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~~--s~dg~~l~ 545 (701)
..... .+.....|...|.+++|+ ++.+++++ ++.|++||...... .+. .+|...+..++| +|++..|+
T Consensus 213 ~~~~~----~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~d~~~La 283 (588)
T 2j04_A 213 SHQPV----SRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLK-TGSLENFHIIPLNHEKESTILL 283 (588)
T ss_dssp SSCCC----EEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEE-CSCCSCCCEEEETTCSSCEEEE
T ss_pred ccccc----eeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEE-cCCCceEEEEEeeeCCCCCEEE
Confidence 63200 000112355789999998 47888887 69999999987666 444 359999999999 99999999
Q ss_pred EEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcc
Q 005352 546 SAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQE 625 (701)
Q Consensus 546 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~ 625 (701)
++++||+ ++|.++. +.++|+ +..
T Consensus 284 ~a~edG~-klw~~d~----------------------------------------------------~~~spd----~~l 306 (588)
T 2j04_A 284 MSNKTSY-KVLLEDE----------------------------------------------------LHVTAD----NII 306 (588)
T ss_dssp ECSSCEE-EEEESSS----------------------------------------------------EEEECC----CSS
T ss_pred EEcCCCC-EEEeecc----------------------------------------------------EEECCC----ceE
Confidence 9999999 9999761 123554 222
Q ss_pred ccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecC
Q 005352 626 YVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGW 685 (701)
Q Consensus 626 ~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~ 685 (701)
.+ +.|+.+++|+....+ +..+.+. ..+++++++++ |+.||+|+.
T Consensus 307 ~a--~~d~~v~lW~~~g~~-l~~~~~~------------~~I~~va~SPd-G~~lA~~~~ 350 (588)
T 2j04_A 307 AP--YLEKKFKKWSTIWNE-FNNYETT------------LVIHGISLSPD-GYSIAIVYD 350 (588)
T ss_dssp HH--HHHHHHHHTTTTTTS-SSSSCCE------------EEEEEEEECTT-SSEEEEEEE
T ss_pred EE--EcCCEEEEEECCCCc-eeeeccc------------eEEEEEEECCC-CCEEEEEEe
Confidence 22 248999999864443 3333222 35788889999 999999874
No 105
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.4e-28 Score=265.99 Aligned_cols=232 Identities=21% Similarity=0.312 Sum_probs=198.8
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
.+|...|+++.| ++++|++|+.||.|++||+.+++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~------------------------------------------- 164 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE------------------------------------------- 164 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-------------------------------------------
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-------------------------------------------
Confidence 357778999887 78999999999999999987764
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEee
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNP 404 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p 404 (701)
.+..+.+|...|.+++| ++ +|++|+.||+|++||+.+++++..+. |...|.+++|++
T Consensus 165 -------------------~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~ 223 (435)
T 1p22_A 165 -------------------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN 223 (435)
T ss_dssp -------------------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT
T ss_pred -------------------EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC
Confidence 34556789999999999 45 99999999999999999999988886 889999999964
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCcEE----EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 405 VDDNYFISGSIDGKVRIWAVLSCHVV----DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 405 ~~~~~l~sgs~dg~v~iwd~~~~~~~----~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
++|++|+.||.|++||+.++... ....|...|.+++| +++++++|+.||.|++||+++++....
T Consensus 224 ---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~------- 291 (435)
T 1p22_A 224 ---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT------- 291 (435)
T ss_dssp ---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE-------
T ss_pred ---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEE-------
Confidence 59999999999999999887643 34568889999998 788999999999999999998765432
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
...+...|.++.+. +.++++++.|+.|++||+.+.........|...|.+++| ++.+|++|+.||.|++||+.+
T Consensus 292 -~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 292 -LNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp -EECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred -EcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence 22455778999884 579999999999999999877666666668899999998 788999999999999999876
Q ss_pred CC
Q 005352 561 HE 562 (701)
Q Consensus 561 ~~ 562 (701)
+.
T Consensus 366 ~~ 367 (435)
T 1p22_A 366 AL 367 (435)
T ss_dssp HT
T ss_pred CC
Confidence 54
No 106
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.7e-28 Score=266.77 Aligned_cols=258 Identities=19% Similarity=0.260 Sum_probs=209.0
Q ss_pred eeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 245 EIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
...+|.+.|++++|+|+ +.+||+++.||.|++|++.+.......
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~----------------------------------- 167 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP----------------------------------- 167 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT-----------------------------------
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc-----------------------------------
Confidence 45679999999999997 789999999999999999764210000
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCee-------eeee-cC
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHC-------LRVF-PH 393 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~-------~~~~-~h 393 (701)
.....++..+.+|...|.+++|+|++ +|++++.||+|++||+.++.. ...+ .|
T Consensus 168 -----------------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h 230 (430)
T 2xyi_A 168 -----------------SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH 230 (430)
T ss_dssp -----------------TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCC
T ss_pred -----------------cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCC
Confidence 00014567788999999999999987 899999999999999987432 2333 48
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC---cEE-EEecCCCcEEEEEEeeCCC-eEEEEecCCcEEEEECCCC
Q 005352 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC---HVV-DWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~---~~~-~~~~~~~~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~ 468 (701)
...|.+++|+|.++.+|++++.||.|++||++++ +.+ ....|...|++++|+|++. .+++|+.||.|++||++..
T Consensus 231 ~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~ 310 (430)
T 2xyi_A 231 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence 8999999999977889999999999999999976 333 4557889999999999987 5889999999999999874
Q ss_pred eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc--------------cceeeecccCCCCeEE
Q 005352 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKGLRRSGNQLS 534 (701)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~--------------~~~~~~~~~~~~~v~~ 534 (701)
..... ....|...|++++|+|++..+|++++.|+.|+|||+.. ....+....|...|.+
T Consensus 311 ~~~~~-------~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 383 (430)
T 2xyi_A 311 KLKLH-------SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 383 (430)
T ss_dssp TSCSE-------EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEE
T ss_pred CCCeE-------EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceE
Confidence 32110 12235678999999996667899999999999999876 2334444558889999
Q ss_pred EEEecCCC-EEEEEeCCCcEEEEeCCCC
Q 005352 535 ACFTSDGK-HIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 535 l~~s~dg~-~l~sgs~Dg~I~iWd~~~~ 561 (701)
++|+|++. +|++++.||.|+||++...
T Consensus 384 ~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 384 FSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999999 9999999999999998754
No 107
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=6.1e-29 Score=258.59 Aligned_cols=245 Identities=16% Similarity=0.248 Sum_probs=191.4
Q ss_pred cccCcceeee--cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc--CCCEEEEEeCCCcEEE
Q 005352 201 DKQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRL 276 (701)
Q Consensus 201 ~~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~i 276 (701)
.|.+.+.++. +++..+++++.|+.|+||++...... ....+.+|.+.|++++|+| ++++||||+.|++|+|
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-----~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-----LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-----EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-----EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 4566666554 55678899999999999998643211 1245789999999999986 4899999999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
||+.+++. ..+..+.+|...
T Consensus 86 Wd~~~~~~------------------------------------------------------------~~~~~~~~h~~~ 105 (316)
T 3bg1_A 86 WREENGTW------------------------------------------------------------EKSHEHAGHDSS 105 (316)
T ss_dssp ECCSSSCC------------------------------------------------------------CEEEEECCCSSC
T ss_pred EECCCCcc------------------------------------------------------------eEEEEccCCCCc
Confidence 99876421 223456789999
Q ss_pred eEEEEEecC--C-eEEEEECCCcEEEEECCCCee---eeee-cCCCCeEEEEEeeCC-----------------CCEEEE
Q 005352 357 ILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHC---LRVF-PHSNYVTCVHFNPVD-----------------DNYFIS 412 (701)
Q Consensus 357 I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~~~---~~~~-~h~~~V~~l~f~p~~-----------------~~~l~s 412 (701)
|.+++|+|+ + +|++++.|++|++||+..+.. ...+ .|...|.+++|+| + +.+|++
T Consensus 106 V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s 184 (316)
T 3bg1_A 106 VNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFAS 184 (316)
T ss_dssp CCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBEEC
T ss_pred eEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc-ccCCccccccccccCccccceEEE
Confidence 999999997 5 899999999999999987632 2222 3888999999998 5 368999
Q ss_pred EEcCCcEEEEeCCCC---cEE-EEecCCCcEEEEEEeeCC----CeEEEEecCCcEEEEECCCCee-eeeeeEEeecccC
Q 005352 413 GSIDGKVRIWAVLSC---HVV-DWVDIRQIVTAVCYRPDG----QGGIVGSMMGDCRFYNVSDNHL-ELDAEICVHSKKK 483 (701)
Q Consensus 413 gs~dg~v~iwd~~~~---~~~-~~~~~~~~i~~i~~sp~g----~~l~~gs~dg~v~i~d~~~~~~-~~~~~~~~~~~~~ 483 (701)
|+.|+.|++||++.. +.+ .+..|...|.+++|+|++ +.|++++.||+|++|++.+... ..... .+ .
T Consensus 185 gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~-~~----~ 259 (316)
T 3bg1_A 185 GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPK-LL----H 259 (316)
T ss_dssp CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCC-EE----E
T ss_pred ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhh-hh----h
Confidence 999999999999754 233 455788999999999986 7899999999999999976311 00000 01 1
Q ss_pred CCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 484 ~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
.+...|.+++|+| ++.+|++++.|+.|+||+..
T Consensus 260 ~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 260 KFNDVVWHVSWSI-TANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ECSSCEEEEEECT-TTCCEEEEESSSCEEEEEEC
T ss_pred cCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEEC
Confidence 2457899999999 78999999999999999964
No 108
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=9.7e-28 Score=258.27 Aligned_cols=243 Identities=17% Similarity=0.245 Sum_probs=197.0
Q ss_pred EEEEEEccCCCE-EEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 253 ILTMKFSPDGQY-LASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 253 I~~l~fspdg~~-Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
...++++|+... +++++.||.|+||++.......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~--------------------------------------------- 71 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD--------------------------------------------- 71 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---------------------------------------------
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---------------------------------------------
Confidence 446888887654 4467889999999986543210
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEec-CC-eEEEEECCCcEEEEECCCC-------eeeeeec-CCCCeEEEE
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGND-------HCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~-~l~s~s~dg~I~iWd~~~~-------~~~~~~~-h~~~V~~l~ 401 (701)
..+..+.+|...|++++|+| ++ +|++++.||+|++||+.++ +++..+. |...|++++
T Consensus 72 -------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 138 (402)
T 2aq5_A 72 -------------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138 (402)
T ss_dssp -------------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEE
T ss_pred -------------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEE
Confidence 23345678999999999999 77 9999999999999999987 4555555 999999999
Q ss_pred EeeCCC-CEEEEEEcCCcEEEEeCCCCcEEEEe---cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 402 FNPVDD-NYFISGSIDGKVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 402 f~p~~~-~~l~sgs~dg~v~iwd~~~~~~~~~~---~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
|+| ++ ++|++++.||.|++||+.+++.+..+ .|...|++++|+|+++.|++++.||.|++||+++++.....
T Consensus 139 ~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--- 214 (402)
T 2aq5_A 139 WHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEK--- 214 (402)
T ss_dssp ECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE---
T ss_pred ECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeee---
Confidence 999 65 79999999999999999999887555 58899999999999999999999999999999987654321
Q ss_pred eecccCCCC-CCeeEEEEecCCCCEEEEE---ECCCcEEEEeCCcccee--eecccCCCCeEEEEEecCCCEEEE-EeCC
Q 005352 478 VHSKKKAPC-KRITGFQFLPQDSSKVMVS---CADSQVRILQGPNVIGK--YKGLRRSGNQLSACFTSDGKHIVS-AGED 550 (701)
Q Consensus 478 ~~~~~~~~~-~~i~~l~~~p~~~~~l~~~---s~dg~I~iwd~~~~~~~--~~~~~~~~~v~~l~~s~dg~~l~s-gs~D 550 (701)
...+. ..+..+.|+| ++.+|+++ +.|+.|++||+.+.... .....+...+.+++|+|++++|++ |+.|
T Consensus 215 ----~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 215 ----DRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp ----ECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred ----ccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence 02222 3488999999 68888888 68999999999865432 222346778999999999999975 5579
Q ss_pred CcEEEEeCCCCC
Q 005352 551 SNVYMWNCIGHE 562 (701)
Q Consensus 551 g~I~iWd~~~~~ 562 (701)
|.|++|++.+++
T Consensus 290 g~i~i~d~~~~~ 301 (402)
T 2aq5_A 290 SSIRYFEITSEA 301 (402)
T ss_dssp SCEEEEEECSST
T ss_pred CeEEEEEecCCC
Confidence 999999998776
No 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.4e-27 Score=257.20 Aligned_cols=249 Identities=13% Similarity=0.051 Sum_probs=194.2
Q ss_pred ccCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEee--cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 247 QAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVV--EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
.+|.+.|++++|+|+|++| ++|+.||.|+|||+. +++.+
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~-------------------------------------- 140 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL-------------------------------------- 140 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE--------------------------------------
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee--------------------------------------
Confidence 4677789999999999996 899999999999997 54322
Q ss_pred eeecCCccEEEcCCccccccCCCeEEE--cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeee----ee-cCCC
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEF--HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR----VF-PHSN 395 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~----~~-~h~~ 395 (701)
..+ ..|...|.+++|+|++ +|++++.++.|++|++.+++... .+ .|..
T Consensus 141 ------------------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~ 196 (450)
T 2vdu_B 141 ------------------------KLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVS 196 (450)
T ss_dssp ------------------------EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSS
T ss_pred ------------------------eeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccC
Confidence 222 2567889999999999 99999999999999998887653 33 3899
Q ss_pred CeEEEEEeeCC---CCEEEEEEcCCcEEEEeCCCCcEEEE--ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCee
Q 005352 396 YVTCVHFNPVD---DNYFISGSIDGKVRIWAVLSCHVVDW--VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (701)
Q Consensus 396 ~V~~l~f~p~~---~~~l~sgs~dg~v~iwd~~~~~~~~~--~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~ 470 (701)
.|++++|+| + +++|++++.|+.|++||+.+++.+.. ..|...|++++|+ ++++|++++.|+.|++||+.+++.
T Consensus 197 ~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 197 MLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN 274 (450)
T ss_dssp CEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred ceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence 999999999 8 88999999999999999998887643 3688999999999 999999999999999999998876
Q ss_pred eeeeeEEee-----------------cccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeC--Ccc---ceeeeccc
Q 005352 471 ELDAEICVH-----------------SKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQG--PNV---IGKYKGLR 527 (701)
Q Consensus 471 ~~~~~~~~~-----------------~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~--~~~---~~~~~~~~ 527 (701)
......... .........|.+++|+| ++.++++++ .++.|++|++ ... ........
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~ 353 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF 353 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc
Confidence 543321100 00012345789999999 788888888 8999999999 322 22222223
Q ss_pred CCCCeEEEEEecCCCEEEEEeC------CCcEEEEeCCCC
Q 005352 528 RSGNQLSACFTSDGKHIVSAGE------DSNVYMWNCIGH 561 (701)
Q Consensus 528 ~~~~v~~l~~s~dg~~l~sgs~------Dg~I~iWd~~~~ 561 (701)
+ ..|.+++|+|++.++++++. +..|.+|.++..
T Consensus 354 ~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 354 P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 4 88999999996544444443 556899987644
No 110
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=3.2e-28 Score=261.24 Aligned_cols=253 Identities=19% Similarity=0.221 Sum_probs=176.3
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
|.+.+....+++++.+||+|+.|++|+|||+.+++....
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~----------------------------------------- 126 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ----------------------------------------- 126 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEE-----------------------------------------
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee-----------------------------------------
Confidence 334444444555677899999999999999988753221
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEec--------CC-eEEEEECCCcEEEEECCCCeeee-eecCCCCeE
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK--------NN-YLLSASIDKTVRLWRVGNDHCLR-VFPHSNYVT 398 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~--------~~-~l~s~s~dg~I~iWd~~~~~~~~-~~~h~~~V~ 398 (701)
.++..+.||.+.|.+++|+| ++ +|++++.|++|+|||+.++.++. .+.|...|.
T Consensus 127 ----------------~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~ 190 (393)
T 4gq1_A 127 ----------------HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGI 190 (393)
T ss_dssp ----------------EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEE
T ss_pred ----------------eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcE
Confidence 12234578999999999998 56 99999999999999998776554 456999999
Q ss_pred EEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE--------------------------EecCCCcEEEEEEe-eCCCeE
Q 005352 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--------------------------WVDIRQIVTAVCYR-PDGQGG 451 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~--------------------------~~~~~~~i~~i~~s-p~g~~l 451 (701)
+++|+|.+.++|++++.|++|++||+++++... ...+...+.++.|. |+++.|
T Consensus 191 ~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l 270 (393)
T 4gq1_A 191 SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI 270 (393)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE
T ss_pred EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE
Confidence 999999444689999999999999998865331 12355678888887 799999
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEe---e-------cccCCCCCCeeEEEEecC-CCCEEEEEECCCcEEEEeCCccc
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICV---H-------SKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQGPNVI 520 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~---~-------~~~~~~~~~i~~l~~~p~-~~~~l~~~s~dg~I~iwd~~~~~ 520 (701)
++++.|+.+++||+...+......... . ..............+.|. ++.++++|+.|+.|++||..+..
T Consensus 271 ~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 271 LAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp EEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred EEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 999999999999998765432211000 0 000011112223344443 34456677789999999998776
Q ss_pred eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 521 GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 521 ~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
.......|..+|.+++|+|||++||+++.+| +.+|.+.
T Consensus 351 ~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 351 SNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 6666666888999999999999999999766 6666653
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=3.7e-27 Score=249.33 Aligned_cols=310 Identities=8% Similarity=0.072 Sum_probs=211.6
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.+.+|.+.|++++|+|||++||+|+.|+ ++||++.+.+....
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~------------------------------------- 55 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS------------------------------------- 55 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-------------------------------------
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-------------------------------------
Confidence 4577999999999999999999998875 78999876542211
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHF 402 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f 402 (701)
.+...+..+++.+++ .+++++.|++|++||+.+++++..+.+...|.+++|
T Consensus 56 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~ 108 (355)
T 3vu4_A 56 ---------------------------QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFL 108 (355)
T ss_dssp ---------------------------EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred ---------------------------eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEE
Confidence 111236667777776 446788889999999999999999999999999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCC-cEEEEecCCCcEEEEEEeeCCCeEEE--EecCCcEEEEECCCCeeeeeee----
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSC-HVVDWVDIRQIVTAVCYRPDGQGGIV--GSMMGDCRFYNVSDNHLELDAE---- 475 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~--gs~dg~v~i~d~~~~~~~~~~~---- 475 (701)
++ + .++++ .++.|++||+.+. +.+..... +...+++++ ..+++ |+.+|.|++||+.++.......
T Consensus 109 ~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~ 180 (355)
T 3vu4_A 109 SR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ 180 (355)
T ss_dssp CS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------
T ss_pred cC-C--EEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccccc
Confidence 87 3 45544 4889999999987 55433333 455566777 56666 5889999999998754110000
Q ss_pred ---EEe-ecccCCCCCCeeEEEEecCCCCEEEEEECCCc-EEEEeCCccceeeecc-c-CCCCeEEEEEecCCCEEEEEe
Q 005352 476 ---ICV-HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ-VRILQGPNVIGKYKGL-R-RSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 476 ---~~~-~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~-I~iwd~~~~~~~~~~~-~-~~~~v~~l~~s~dg~~l~sgs 548 (701)
+.. ......|...|++++|+| ++.+|++++.|++ |++||+.+........ . |...|.+++|+|+|++|++++
T Consensus 181 ~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 181 QKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp ------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred ccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence 000 122456778999999999 7899999999998 9999998766665554 3 889999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccc
Q 005352 549 EDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVF 628 (701)
Q Consensus 549 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~ 628 (701)
.|+.|+|||+..+........... ....+. .-.|.-. ..............++|+|+ +..+++
T Consensus 260 ~d~~v~iw~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~-------~~~~~~~~~~~~~~~a~~~d----~~~l~~ 322 (355)
T 3vu4_A 260 DKWTLHVFEIFNDQDNKRHALKGW-INMKYF-----QSEWSLC-------NFKLSVDKHVRGCKIAWISE----SSLVVV 322 (355)
T ss_dssp TTCEEEEEESSCCSCCCSEETTTT-EECCCC-----CCSSCSE-------EEECCCCTTCCCCEEEESSS----SEEEEE
T ss_pred CCCEEEEEEccCCCCcccccccce-eecccc-----cccccee-------EEEeccCCCCCceEEEEeCC----CCEEEE
Confidence 999999999987642211110000 000000 0001100 00000011222356788987 677888
Q ss_pred cCCCCcccCCCCccCCC
Q 005352 629 ESFPKGCATWPEEKLPA 645 (701)
Q Consensus 629 ~s~d~~~~~W~~~~~~~ 645 (701)
++.|+.+.+|+......
T Consensus 323 ~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 323 WPHTRMIETFKVVFDDE 339 (355)
T ss_dssp ETTTTEEEEEEEEEETT
T ss_pred EeCCCeEEEEEEEcCCC
Confidence 88999999988665443
No 112
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-27 Score=254.05 Aligned_cols=255 Identities=18% Similarity=0.190 Sum_probs=203.0
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECC--CCeeeeeec-CCCCeEEEEEeeCC--CCEEEEEEcCCc
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG--NDHCLRVFP-HSNYVTCVHFNPVD--DNYFISGSIDGK 418 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~--~~~~~~~~~-h~~~V~~l~f~p~~--~~~l~sgs~dg~ 418 (701)
+++..+.+|...|++++|+|++ +|++++.||.|++||+. +.+.+..+. |...|++++|+| + +++|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCE
Confidence 3456778999999999999999 99999999999999998 556666665 899999999987 5 899999999999
Q ss_pred EEEEeCCCCc--EE-EEecCCCcEEEEEEeeC--CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEE
Q 005352 419 VRIWAVLSCH--VV-DWVDIRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 419 v~iwd~~~~~--~~-~~~~~~~~i~~i~~sp~--g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 493 (701)
|++||+.+++ .+ ....|...|.+++|+|+ +..|++++.||.|++||+.......... ...+...|.+++
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~~~~v~~~~ 154 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------IDAHAIGVNSAS 154 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE------EECCTTCEEEEE
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE------ecCCCCceEEEE
Confidence 9999999985 33 45568899999999999 9999999999999999998874332211 234567899999
Q ss_pred EecC------------CCCEEEEEECCCcEEEEeCCccce----eeecccCCCCeEEEEEecC---CCEEEEEeCCCcEE
Q 005352 494 FLPQ------------DSSKVMVSCADSQVRILQGPNVIG----KYKGLRRSGNQLSACFTSD---GKHIVSAGEDSNVY 554 (701)
Q Consensus 494 ~~p~------------~~~~l~~~s~dg~I~iwd~~~~~~----~~~~~~~~~~v~~l~~s~d---g~~l~sgs~Dg~I~ 554 (701)
|+|. ++.++++++.|+.|++||+..... ......|...|.+++|+|+ +++|++++.||.|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~ 234 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEE
Confidence 9995 589999999999999999864332 2233458899999999999 89999999999999
Q ss_pred EEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCc
Q 005352 555 MWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKG 634 (701)
Q Consensus 555 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~ 634 (701)
+||+.++..+.... . .........+..++|+|+ +..+++++.|+.
T Consensus 235 iwd~~~~~~~~~~~------~-------------------------~~~~~~~~~v~~~~~s~~----g~~l~~~~~dg~ 279 (379)
T 3jrp_A 235 IWTQDNEQGPWKKT------L-------------------------LKEEKFPDVLWRASWSLS----GNVLALSGGDNK 279 (379)
T ss_dssp EEEESSTTSCCEEE------E-------------------------SSSSCCSSCEEEEEECSS----SCCEEEEESSSS
T ss_pred EEeCCCCCccceee------e-------------------------eccccCCCcEEEEEEcCC----CCEEEEecCCCc
Confidence 99998865211000 0 000012334566788887 677888889999
Q ss_pred ccCCCCc
Q 005352 635 CATWPEE 641 (701)
Q Consensus 635 ~~~W~~~ 641 (701)
+++|+..
T Consensus 280 i~iw~~~ 286 (379)
T 3jrp_A 280 VTLWKEN 286 (379)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 9999976
No 113
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.5e-28 Score=252.57 Aligned_cols=274 Identities=12% Similarity=0.080 Sum_probs=206.2
Q ss_pred ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005352 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (701)
Q Consensus 210 ~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~ 289 (701)
..++..+++|+.|+.|++|+....... ..+. .+.|.++.|+|+ +++|+.|++|++|+......+..+.
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~-------~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~ 112 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTI-------TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSK 112 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCE-------EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETT
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEE-------EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecC
Confidence 345667888999999999998654221 1121 456788889888 9999999999999976532111110
Q ss_pred CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEE-cCCccCeEEEEEec--CC
Q 005352 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF-HGHSGEILDLSWSK--NN 366 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s~--~~ 366 (701)
. .+.+..+ .+|...|.+++|+| ++
T Consensus 113 --~---------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~ 139 (343)
T 3lrv_A 113 --T---------------------------------------------------NKVLREIEVDSANEIIYMYGHNEVNT 139 (343)
T ss_dssp --T---------------------------------------------------CCEEEEEECCCSSCEEEEECCC---C
T ss_pred --C---------------------------------------------------cceeEEeecCCCCCEEEEEcCCCCCC
Confidence 0 0112222 36778999999999 88
Q ss_pred -eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--EEec-CCCcEE
Q 005352 367 -YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVD-IRQIVT 440 (701)
Q Consensus 367 -~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~-~~~~i~ 440 (701)
+|++++.||+|++||+++++++..+. +...|++++|+| ++.+|++|+.||.|++||+++++.+ .+.. |...|+
T Consensus 140 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~ 218 (343)
T 3lrv_A 140 EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIK 218 (343)
T ss_dssp CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEE
T ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEE
Confidence 99999999999999999999877663 566899999999 9999999999999999999998865 4455 789999
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCe--eEEEEecCCCCEEEEEEC-CCcEEEEeCC
Q 005352 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI--TGFQFLPQDSSKVMVSCA-DSQVRILQGP 517 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i--~~l~~~p~~~~~l~~~s~-dg~I~iwd~~ 517 (701)
+++|+|++.+|++++ ++.|++||+++......... ...+...+ .+++|+| ++.+|++++. |+.|++|+..
T Consensus 219 ~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 219 EVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT-----YTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp EEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC-----CBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc-----cccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEc
Confidence 999999999999999 55999999998754321110 00111222 4699999 7899999998 9999999986
Q ss_pred ccceeeecccCCCCeEEEEEec---CCCEEEEEeCCCcEEEEeCCC
Q 005352 518 NVIGKYKGLRRSGNQLSACFTS---DGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 518 ~~~~~~~~~~~~~~v~~l~~s~---dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
.....+.. .++..++|.+ +...|++++.||.+.++-...
T Consensus 292 ~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 292 KKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp TTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred ccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 55444433 5677888988 889999999999999886443
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=3.9e-26 Score=247.92 Aligned_cols=277 Identities=10% Similarity=0.068 Sum_probs=220.5
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeee
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE 287 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~ 287 (701)
++++++..+++++.++.|++|+....... .......+.+|.+.|.+++|+|+++++++++.|+.|++||+.+++.
T Consensus 129 ~~s~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~--- 203 (433)
T 3bws_A 129 RFIDNTRLAIPLLEDEGMDVLDINSGQTV--RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY--- 203 (433)
T ss_dssp EESSSSEEEEEBTTSSSEEEEETTTCCEE--EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE---
T ss_pred EEeCCCeEEEEeCCCCeEEEEECCCCeEe--eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE---
Confidence 34443344555777889999997654321 2222224668999999999999999999999999999999977542
Q ss_pred ecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-
Q 005352 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN- 366 (701)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~- 366 (701)
+..+..|...+.+++|+|++
T Consensus 204 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 224 (433)
T 3bws_A 204 -----------------------------------------------------------KATVDLTGKWSKILLYDPIRD 224 (433)
T ss_dssp -----------------------------------------------------------EEEEECSSSSEEEEEEETTTT
T ss_pred -----------------------------------------------------------EEEEcCCCCCeeEEEEcCCCC
Confidence 33445688899999999998
Q ss_pred eE-EEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE--------cCCcEEEEeCCCCcEEEEecCCC
Q 005352 367 YL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS--------IDGKVRIWAVLSCHVVDWVDIRQ 437 (701)
Q Consensus 367 ~l-~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs--------~dg~v~iwd~~~~~~~~~~~~~~ 437 (701)
++ ++++.|+.|++||+.+++.+..+.+...+.+++|+| ++++|++++ .|+.|++||+.+++.+....+..
T Consensus 225 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~ 303 (433)
T 3bws_A 225 LVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG 303 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE
T ss_pred EEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC
Confidence 66 455589999999999999999888778899999999 898998888 48899999999998888777777
Q ss_pred cEEEEEEeeCCCeE-EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC---------
Q 005352 438 IVTAVCYRPDGQGG-IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA--------- 507 (701)
Q Consensus 438 ~i~~i~~sp~g~~l-~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~--------- 507 (701)
.+..++|+|+++.+ ++++.++.|++||+.+++..... .+...+.+++|+| ++.++++++.
T Consensus 304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~---------~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~ 373 (433)
T 3bws_A 304 NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI---------PVFDKPNTIALSP-DGKYLYVSCRGPNHPTEGY 373 (433)
T ss_dssp CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE---------ECSSSEEEEEECT-TSSEEEEEECCCCCTTTCT
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe---------cCCCCCCeEEEcC-CCCEEEEEecCCCcccccc
Confidence 89999999999765 55688999999999987654321 1235688999999 6777777776
Q ss_pred ------CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCCC
Q 005352 508 ------DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE-DSNVYMWNCIG 560 (701)
Q Consensus 508 ------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~-Dg~I~iWd~~~ 560 (701)
||.|++||..+........ ....+.+++|+|+|++|++++. |+.|++|++++
T Consensus 374 ~~~g~~dg~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 374 LKKGLVLGKVYVIDTTTDTVKEFWE-AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCCSSCCEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ccccccceEEEEEECCCCcEEEEec-CCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 5699999997655443332 3567899999999999998875 99999999864
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.5e-25 Score=239.83 Aligned_cols=264 Identities=12% Similarity=0.130 Sum_probs=210.5
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEeecCeeeeeecCCCCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 294 (701)
+++++.++.|++|+...... .+.+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+.
T Consensus 5 ~vs~~~d~~v~v~d~~~~~~-------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~-------- 68 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNKV-------TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA-------- 68 (391)
T ss_dssp EEEETTTTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE--------
T ss_pred EEEcCCCCEEEEEECCCCeE-------EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE--------
Confidence 45688899999999764321 12355564 48999999999987 677799999999998876432
Q ss_pred CceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE-EEE
Q 005352 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SAS 372 (701)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s 372 (701)
.+..| ..+.+++|+|++ +|+ +++
T Consensus 69 ------------------------------------------------------~~~~~-~~v~~~~~spdg~~l~~~~~ 93 (391)
T 1l0q_A 69 ------------------------------------------------------TVPAG-SSPQGVAVSPDGKQVYVTNM 93 (391)
T ss_dssp ------------------------------------------------------EEECS-SSEEEEEECTTSSEEEEEET
T ss_pred ------------------------------------------------------EEECC-CCccceEECCCCCEEEEEEC
Confidence 22223 389999999999 664 555
Q ss_pred CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEE-EEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeE
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF-ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGG 451 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l-~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l 451 (701)
.++.|++||+.+++.+..+.+...+.+++|+| ++++| ++++.++.|++||+.+++.+........+..++|+|+++.+
T Consensus 94 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l 172 (391)
T 1l0q_A 94 ASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKV 172 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEE
T ss_pred CCCEEEEEECCCCeEEEEEeCCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEE
Confidence 67999999999999999988888899999999 88876 67888999999999999988877777888999999999988
Q ss_pred -EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE---CCCcEEEEeCCccceeeeccc
Q 005352 452 -IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC---ADSQVRILQGPNVIGKYKGLR 527 (701)
Q Consensus 452 -~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s---~dg~I~iwd~~~~~~~~~~~~ 527 (701)
++++.++.|++||+++++...... +...+.+++|+| ++.++++++ .++.|++||+.+........
T Consensus 173 ~~~~~~~~~v~~~d~~~~~~~~~~~---------~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~- 241 (391)
T 1l0q_A 173 YVANFDSMSISVIDTVTNSVIDTVK---------VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIP- 241 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE---------CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEe---------cCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEEEEEe-
Confidence 567788999999999876543211 235688999999 677777777 79999999998655443333
Q ss_pred CCCCeEEEEEecCCCEE-EEEeCCCcEEEEeCCCCC
Q 005352 528 RSGNQLSACFTSDGKHI-VSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 528 ~~~~v~~l~~s~dg~~l-~sgs~Dg~I~iWd~~~~~ 562 (701)
....+.+++|+|++++| ++++.|+.|++||+.+++
T Consensus 242 ~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 242 VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 33468899999999988 677889999999998875
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=3.3e-26 Score=248.43 Aligned_cols=328 Identities=9% Similarity=0.026 Sum_probs=239.4
Q ss_pred cccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCce
Q 005352 218 FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSC 297 (701)
Q Consensus 218 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 297 (701)
.++.++.++||.++.....+. ....+..|. .+.+++|+|++.++++++.|+.|++||+.+++......
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------- 161 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHR---FISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSP-------- 161 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEE---EEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECC--------
T ss_pred cccCCCceEEEEECCCCCcce---EEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecC--------
Confidence 456677677777654322111 112344443 45699999988888889899999999998876432111
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCc
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKT 376 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~ 376 (701)
...+.+|...|.+++|++++ ++++++.|+.
T Consensus 162 -------------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 162 -------------------------------------------------PEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp -------------------------------------------------CHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred -------------------------------------------------cccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 11235788999999999999 8899999999
Q ss_pred EEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEE-EEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEE
Q 005352 377 VRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFI-SGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG 454 (701)
Q Consensus 377 I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g 454 (701)
|++||+.+++.+..+. |...+.+++|+| ++++++ +++.++.|++||+++++.+........+.+++|+|+++.++++
T Consensus 193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 193 VHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEE
Confidence 9999999999888876 788999999999 888775 4447999999999999988877777889999999999999998
Q ss_pred e--------cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc
Q 005352 455 S--------MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL 526 (701)
Q Consensus 455 s--------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~ 526 (701)
+ .||.|++||+.+++...... +...+.+++|+|++..++++++.++.|++||..+.......
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~- 341 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIG---------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI- 341 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEE---------EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE-
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeecc---------CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe-
Confidence 8 48899999999886543221 11357889999954456677788999999999865443332
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCC
Q 005352 527 RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSD 606 (701)
Q Consensus 527 ~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 606 (701)
.+...+.+++|+|+|++|++++.+..-.
T Consensus 342 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~---------------------------------------------------- 369 (433)
T 3bws_A 342 PVFDKPNTIALSPDGKYLYVSCRGPNHP---------------------------------------------------- 369 (433)
T ss_dssp ECSSSEEEEEECTTSSEEEEEECCCCCT----------------------------------------------------
T ss_pred cCCCCCCeEEEcCCCCEEEEEecCCCcc----------------------------------------------------
Confidence 3667899999999999999887632000
Q ss_pred CCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecC-
Q 005352 607 DDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGW- 685 (701)
Q Consensus 607 ~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~- 685 (701)
....+++++.|+.+.+|+.+....+..+..+ ..+.+++++++ |.+|++++.
T Consensus 370 ---------------~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~------------~~~~~~~~s~d-g~~l~~~~~~ 421 (433)
T 3bws_A 370 ---------------TEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG------------NQPTGLDVSPD-NRYLVISDFL 421 (433)
T ss_dssp ---------------TTCTTSCCSSCCEEEEEETTTTEEEEEEECS------------SSEEEEEECTT-SCEEEEEETT
T ss_pred ---------------ccccccccccceEEEEEECCCCcEEEEecCC------------CCCceEEEcCC-CCEEEEEECC
Confidence 0112233455666666666555444333222 23556778888 888887764
Q ss_pred CCeEeEEeecCC
Q 005352 686 DGRIRSFLNYGL 697 (701)
Q Consensus 686 DG~Irvw~~~g~ 697 (701)
||.|++|+.-++
T Consensus 422 d~~i~v~~~~~~ 433 (433)
T 3bws_A 422 DHQIRVYRRDGF 433 (433)
T ss_dssp TTEEEEEEETTC
T ss_pred CCeEEEEEecCC
Confidence 999999987653
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.8e-26 Score=247.27 Aligned_cols=290 Identities=10% Similarity=-0.049 Sum_probs=200.5
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCe---eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE---RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
..+|.+++|+|+|++|+++ .++.|++||+.+++ .+..+..+........+....... ..+...............
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQ-GQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhc-cccccccccccccccCcC
Confidence 3578899999999976666 57899999999998 555554322100000000000000 000000000000000000
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eE-EEEECCCcEEEEECC--CCeeeeee---cCCCCeEE
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVG--NDHCLRVF---PHSNYVTC 399 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l-~s~s~dg~I~iWd~~--~~~~~~~~---~h~~~V~~ 399 (701)
. . ...+... ...+.....+|.+.|.+++|+|++ +| ++++.||.|++||+. +++++..+ .|...|++
T Consensus 82 ~----~--~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~ 154 (450)
T 2vdu_B 82 D----S--IKRTAAK-VPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNA 154 (450)
T ss_dssp -------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEE
T ss_pred c----c--ccccCcc-ccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceE
Confidence 0 0 0000000 001223446788899999999999 64 889999999999999 88888777 47789999
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-----EEecCCCcEEEEEEeeC---CCeEEEEecCCcEEEEECCCCeee
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-----DWVDIRQIVTAVCYRPD---GQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-----~~~~~~~~i~~i~~sp~---g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
++|+| ++++|++++.+|.|++|++.+++.. ....|...|++++|+|+ +++|++|+.|+.|++||+.++...
T Consensus 155 ~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 155 ISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred EEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 99999 9999999999999999999887654 45568899999999999 999999999999999999877543
Q ss_pred eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc-------------------------
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL------------------------- 526 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~------------------------- 526 (701)
.. ....|...|.+++|+ ++.+|++++.|+.|++||+.+........
T Consensus 234 ~~-------~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 234 DK-------WLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp EE-------ECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred ee-------eecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence 21 133466889999999 78999999999999999988654332221
Q ss_pred cCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeC
Q 005352 527 RRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNC 558 (701)
Q Consensus 527 ~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~ 558 (701)
.....|.+++|+|++++|++++ .|+.|+||++
T Consensus 305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 2345789999999999999999 8999999999
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=1.6e-25 Score=243.31 Aligned_cols=266 Identities=18% Similarity=0.290 Sum_probs=202.9
Q ss_pred eecccCcceeeecCc---cccccccccceEEEEEccCccchh---hhcccCceeccCCCcEEEEEEccCCC-EEEEEeCC
Q 005352 199 VVDKQGEGERVRLNE---EDAMFCSKVQRVKVYHCKKRSKEL---SALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDD 271 (701)
Q Consensus 199 ~~~~~~~~~~~~~~~---~~~~~~~~d~~v~vw~~~~~~~~~---~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~D 271 (701)
...|.+.+.++++.+ ..+++++.++.|+||++....... ........+.+|.+.|++|+|+|++. +|++|+.|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 356778888777665 357778999999999986532111 11233456789999999999999988 99999999
Q ss_pred CcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEc
Q 005352 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (701)
Q Consensus 272 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (701)
|.|++|++.++...... ..+...+.
T Consensus 204 g~i~vwd~~~~~~~~~~-------------------------------------------------------~~~~~~~~ 228 (430)
T 2xyi_A 204 HTICLWDINATPKEHRV-------------------------------------------------------IDAKNIFT 228 (430)
T ss_dssp SCEEEEETTSCCBGGGE-------------------------------------------------------EECSEEEC
T ss_pred CeEEEEeCCCCCCCCce-------------------------------------------------------eccceeec
Confidence 99999999774311000 02345667
Q ss_pred CCccCeEEEEEecC-C-eEEEEECCCcEEEEECCCC---eeeeee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC
Q 005352 352 GHSGEILDLSWSKN-N-YLLSASIDKTVRLWRVGND---HCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (701)
Q Consensus 352 ~h~~~I~~l~~s~~-~-~l~s~s~dg~I~iWd~~~~---~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~ 425 (701)
+|...|.+++|+|+ + +|++++.|+.|++||++++ +.+..+ .|...|++++|+|....+|++|+.||.|++||++
T Consensus 229 ~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~ 308 (430)
T 2xyi_A 229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCC
Confidence 89999999999994 4 8999999999999999987 455555 4899999999999333479999999999999999
Q ss_pred CC-cEE-EEecCCCcEEEEEEeeCCC-eEEEEecCCcEEEEECCCCeeeeee------eEEeecccCCCCCCeeEEEEec
Q 005352 426 SC-HVV-DWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDA------EICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 426 ~~-~~~-~~~~~~~~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~------~~~~~~~~~~~~~~i~~l~~~p 496 (701)
+. +.+ .+..|...|++++|+|+++ .|++++.||.|++||+......... ..........|...|.+++|+|
T Consensus 309 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 388 (430)
T 2xyi_A 309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 388 (430)
T ss_dssp CTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS
T ss_pred CCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC
Confidence 73 333 5556889999999999985 6889999999999999863211100 0011112345667899999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCcc
Q 005352 497 QDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
++..++++++.|+.|+||++...
T Consensus 389 ~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 389 NEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp SSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCEEEEEECCCCEEEeEcccc
Confidence 54449999999999999998743
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.4e-26 Score=263.94 Aligned_cols=253 Identities=18% Similarity=0.178 Sum_probs=201.6
Q ss_pred EEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECC--CCeeeeeec-CCCCeEEEEEeeCC--CCEEEEEEcCCcEEE
Q 005352 348 HEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG--NDHCLRVFP-HSNYVTCVHFNPVD--DNYFISGSIDGKVRI 421 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~--~~~~~~~~~-h~~~V~~l~f~p~~--~~~l~sgs~dg~v~i 421 (701)
..+.+|.+.|++++|+|++ +|++|+.||+|++||+. +++.+..+. |...|++++|+| + +++|++|+.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEE
Confidence 4568999999999999999 99999999999999998 445666665 999999999998 6 899999999999999
Q ss_pred EeCCCCc---EEEEecCCCcEEEEEEeeC--CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 422 WAVLSCH---VVDWVDIRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 422 wd~~~~~---~~~~~~~~~~i~~i~~sp~--g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
||+.+++ ......|...|++++|+|+ ++.+++|+.||.|++||+++........ ...+...|.++.|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~------~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------IDAHAIGVNSASWAP 155 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE------EECCSSCEEEEEECC
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE------eecCCCceEEEEecC
Confidence 9999885 3355568899999999999 9999999999999999998774322211 234567899999999
Q ss_pred C------------CCCEEEEEECCCcEEEEeCCccc----eeeecccCCCCeEEEEEecC---CCEEEEEeCCCcEEEEe
Q 005352 497 Q------------DSSKVMVSCADSQVRILQGPNVI----GKYKGLRRSGNQLSACFTSD---GKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 497 ~------------~~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~~~~~v~~l~~s~d---g~~l~sgs~Dg~I~iWd 557 (701)
. ++..+++++.||.|++||++... .......|...|++++|+|+ +.+|++|+.||.|++||
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5 48899999999999999987542 22333458899999999999 99999999999999999
Q ss_pred CCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccC
Q 005352 558 CIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCAT 637 (701)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~ 637 (701)
+.++...... ...........+..++|+|+ +..+++++.|+.+++
T Consensus 236 ~~~~~~~~~~-------------------------------~~~~~~~~~~~v~~l~~spd----g~~l~s~s~Dg~I~v 280 (753)
T 3jro_A 236 QDNEQGPWKK-------------------------------TLLKEEKFPDVLWRASWSLS----GNVLALSGGDNKVTL 280 (753)
T ss_dssp ESSSSSCCBC-------------------------------CBSSSSCCSSCCCCEEECTT----TCCEEEECSSSCEEC
T ss_pred CCCCCCccee-------------------------------EEeccCCCCCceEEEEEcCC----CCEEEEEcCCCEEEE
Confidence 9886521100 00001112345677889997 678889999999999
Q ss_pred CCCcc
Q 005352 638 WPEEK 642 (701)
Q Consensus 638 W~~~~ 642 (701)
|+...
T Consensus 281 wd~~~ 285 (753)
T 3jro_A 281 WKENL 285 (753)
T ss_dssp CBCCS
T ss_pred EecCC
Confidence 99874
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.9e-26 Score=241.19 Aligned_cols=233 Identities=13% Similarity=0.097 Sum_probs=178.7
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEc
Q 005352 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF 335 (701)
Q Consensus 256 l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (701)
..+.+++.+|++|+.||+|++||+.+++.+..+
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~----------------------------------------------- 74 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTI----------------------------------------------- 74 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEE-----------------------------------------------
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEE-----------------------------------------------
Confidence 344568889999999999999999887543322
Q ss_pred CCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECC---------CCeeeeeec--CCCCeEEEEEee
Q 005352 336 PPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVG---------NDHCLRVFP--HSNYVTCVHFNP 404 (701)
Q Consensus 336 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~---------~~~~~~~~~--h~~~V~~l~f~p 404 (701)
. ...|.++.|+|. +++++.|++|++|+.. +++.+..+. |...|.+++|+|
T Consensus 75 ---------------~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 135 (343)
T 3lrv_A 75 ---------------T--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHN 135 (343)
T ss_dssp ---------------E--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC
T ss_pred ---------------e--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCC
Confidence 1 234556667776 8899999999999655 555455444 668899999998
Q ss_pred -CCCCEEEEEEcCCcEEEEeCCCCcEEEEe--cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 405 -VDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 405 -~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
.++++|++++.||.|++||+++++..... .+...+++++|+|++.+|++|+.||.|++||+++++... ...
T Consensus 136 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~------~~~ 209 (343)
T 3lrv_A 136 EVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS------SRF 209 (343)
T ss_dssp ---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC------EEC
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc------cEE
Confidence 35789999999999999999999887554 345579999999999999999999999999999876431 011
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeeccc---CCCCe--EEEEEecCCCEEEEEeC-CCcEEE
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLR---RSGNQ--LSACFTSDGKHIVSAGE-DSNVYM 555 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~---~~~~v--~~l~~s~dg~~l~sgs~-Dg~I~i 555 (701)
...|...|++++|+| ++.+|++++ ++.|++||+++......... +...+ .+++|+|+|++|++++. |+.|+|
T Consensus 210 ~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v 287 (343)
T 3lrv_A 210 PVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTI 287 (343)
T ss_dssp CCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEE
Confidence 123678999999999 789999999 55999999986544322211 22223 46999999999999998 999999
Q ss_pred EeCCCCC
Q 005352 556 WNCIGHE 562 (701)
Q Consensus 556 Wd~~~~~ 562 (701)
|++....
T Consensus 288 ~~~~~~~ 294 (343)
T 3lrv_A 288 YKFDKKT 294 (343)
T ss_dssp EEECTTT
T ss_pred EEEcccc
Confidence 9997654
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.6e-24 Score=220.34 Aligned_cols=284 Identities=14% Similarity=0.125 Sum_probs=187.2
Q ss_pred EEEEEEccCCC---EEEEEeCCCcEEEEEeecC---eeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 253 ILTMKFSPDGQ---YLASAGDDGVVRLWQVVED---ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 253 I~~l~fspdg~---~Lasgs~Dg~I~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
+.+|-|-.-|- .++++++ ..|++|+..++ ++++++.+++.++..+.+.++.... ..+....-....+..+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL-VCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC-EEEEECSSSEEEEEEECC
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce-eeeeeccccccceEEEEE
Confidence 55666654433 6888887 68999999998 8888888888766655555433322 223333333333333222
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEE---CCCcEEEEECC-CCeeeeeec-CCCCeEEEE
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSAS---IDKTVRLWRVG-NDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s---~dg~I~iWd~~-~~~~~~~~~-h~~~V~~l~ 401 (701)
+.+.... .....-.+|...|..+ +++.++.++ .|+.|++|++. +++.+..+. |...++.++
T Consensus 120 spd~~~~-----------~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~ 185 (356)
T 2w18_A 120 SSDDESE-----------KQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILT 185 (356)
T ss_dssp ------C-----------CEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEE
T ss_pred CCCcccc-----------ccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEE
Confidence 2220000 1111123455455554 556555554 49999999994 477666554 888888888
Q ss_pred EeeC--CCCEEEEEEcCCcEEEEeCCCCcEEEEec-CC---CcEEEEEEeeCCCeE------------EEEecCCcEEEE
Q 005352 402 FNPV--DDNYFISGSIDGKVRIWAVLSCHVVDWVD-IR---QIVTAVCYRPDGQGG------------IVGSMMGDCRFY 463 (701)
Q Consensus 402 f~p~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~---~~i~~i~~sp~g~~l------------~~gs~dg~v~i~ 463 (701)
|+|. ++.+|++++.|++|+|||+.+++.+..+. +. ..+.+++|+|+|+.+ ++|+.|++|++|
T Consensus 186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp EEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred eeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 8884 56899999999999999999999886654 32 357788999999887 557789999999
Q ss_pred ECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeE-EEEEecCCC
Q 005352 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQL-SACFTSDGK 542 (701)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~-~l~~s~dg~ 542 (701)
|..+++......+.. ...+...+.+..+ ++.++++++.|++|+|||+.+.........|...+. .++|+|||+
T Consensus 266 d~~tgk~l~v~~~~~---p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~ 339 (356)
T 2w18_A 266 NPKTTLSVGVMLYCL---PPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDS 339 (356)
T ss_dssp ETTTTEEEEEEEECC---CTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSS
T ss_pred ECCCCEEEEEEEeec---cCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCC
Confidence 999887653221111 1223333333333 367899999999999999998776655555666554 689999999
Q ss_pred EEEEEeCCCcEEEEeC
Q 005352 543 HIVSAGEDSNVYMWNC 558 (701)
Q Consensus 543 ~l~sgs~Dg~I~iWd~ 558 (701)
+|++|+.|++|+|||+
T Consensus 340 ~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 340 HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEEECCCcEEEecC
Confidence 9999999999999995
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=6.9e-25 Score=231.84 Aligned_cols=275 Identities=12% Similarity=0.141 Sum_probs=200.5
Q ss_pred cccCcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEE-EEEeCCCcEEEE
Q 005352 201 DKQGEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYL-ASAGDDGVVRLW 277 (701)
Q Consensus 201 ~~~~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iW 277 (701)
.|...+.+++++ +..+++|+.+ .++||+....... ...+...+..+++.++++++ ++++.|++|+||
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHI---------MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEE---------EEEECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCccee---------eeeecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 355666666554 4555555554 5889997543211 11222357888999988887 567788999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
|+.+++.+. .+. |...|
T Consensus 87 d~~~~~~~~--------------------------------------------------------------~~~-~~~~v 103 (355)
T 3vu4_A 87 DDVKKQDVS--------------------------------------------------------------RIK-VDAPV 103 (355)
T ss_dssp ETTTTEEEE--------------------------------------------------------------EEE-CSSCE
T ss_pred ECCCCcEEE--------------------------------------------------------------EEE-CCCce
Confidence 998876432 222 45689
Q ss_pred EEEEEecCCeEEEEECCCcEEEEECCCC-eeeeeecCCCCeEEEEEeeCCCCEEEE--EEcCCcEEEEeCCCCc------
Q 005352 358 LDLSWSKNNYLLSASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFIS--GSIDGKVRIWAVLSCH------ 428 (701)
Q Consensus 358 ~~l~~s~~~~l~s~s~dg~I~iWd~~~~-~~~~~~~h~~~V~~l~f~p~~~~~l~s--gs~dg~v~iwd~~~~~------ 428 (701)
.+++++++..++ + .|+.|++||+.++ +.+..+.. +...+++++ .++++ |+.||.|++||+.++.
T Consensus 104 ~~v~~~~~~~~~-~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~ 176 (355)
T 3vu4_A 104 KDLFLSREFIVV-S-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQD 176 (355)
T ss_dssp EEEEECSSEEEE-E-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET---TEEEEEESSCTTCEEEEECCC--------
T ss_pred EEEEEcCCEEEE-E-EcCEEEEEECCCCceeeEEecc--CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCcccccc
Confidence 999998876333 2 4789999999988 77666655 455566665 56666 5789999999999865
Q ss_pred -----------EEEEecCCCcEEEEEEeeCCCeEEEEecCCc-EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 429 -----------VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGD-CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 429 -----------~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
...+..|...|++++|+|+|++|++|+.||+ |++||+++++...... ...|...|.+++|+|
T Consensus 177 ~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~------~g~h~~~v~~~~~s~ 250 (355)
T 3vu4_A 177 QGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR------RGLDRADVVDMKWST 250 (355)
T ss_dssp ----------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE------CTTCCSCEEEEEECT
T ss_pred ccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE------cCCCCCcEEEEEECC
Confidence 4566789999999999999999999999998 9999999876543211 122668899999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCccce----ee------------------ecc-cCCCCeEEEEEecCCCEEEEEeCCCcE
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVIG----KY------------------KGL-RRSGNQLSACFTSDGKHIVSAGEDSNV 553 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~~----~~------------------~~~-~~~~~v~~l~~s~dg~~l~sgs~Dg~I 553 (701)
++.+|++++.|+.|++||+..... .+ ... ........++|++++++|++++.||.+
T Consensus 251 -~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~ 329 (355)
T 3vu4_A 251 -DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI 329 (355)
T ss_dssp -TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred -CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence 789999999999999999864321 00 000 012234678999999999999999999
Q ss_pred EEEeCCCCC
Q 005352 554 YMWNCIGHE 562 (701)
Q Consensus 554 ~iWd~~~~~ 562 (701)
++|++..++
T Consensus 330 ~~~~~~~~~ 338 (355)
T 3vu4_A 330 ETFKVVFDD 338 (355)
T ss_dssp EEEEEEEET
T ss_pred EEEEEEcCC
Confidence 999988765
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.7e-25 Score=239.96 Aligned_cols=272 Identities=14% Similarity=0.044 Sum_probs=170.2
Q ss_pred CCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeee-----e-cCCCCeEEEEEee-------CCCCEEEEEEcCC
Q 005352 352 GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRV-----F-PHSNYVTCVHFNP-------VDDNYFISGSIDG 417 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~-----~-~h~~~V~~l~f~p-------~~~~~l~sgs~dg 417 (701)
.|...+....+.+++ +|++++.|++|+|||+.++.+... + .|.+.|++++|+| .++++|++|+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 455555555556666 899999999999999998876542 2 2999999999987 2678999999999
Q ss_pred cEEEEeCCCCc-EEEEecCCCcEEEEEEeeCCC-eEEEEecCCcEEEEECCCCeeeeeeeEEe-----------------
Q 005352 418 KVRIWAVLSCH-VVDWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICV----------------- 478 (701)
Q Consensus 418 ~v~iwd~~~~~-~~~~~~~~~~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~~~----------------- 478 (701)
+|+|||+.++. ......|...+.+++|+|++. +|++|+.||.|++||+++++.........
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 99999998765 457778999999999999874 79999999999999998876433221100
Q ss_pred ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
......+...+.++.|.+.++..+++++.|+.+++||+...........+...+..+.+.|+++.+...
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----------- 315 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF----------- 315 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS-----------
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc-----------
Confidence 011234667889999986689999999999999999986543332222233333333333332111000
Q ss_pred CCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCC
Q 005352 559 IGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATW 638 (701)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W 638 (701)
.......+.|.. .+..+++++.|+.+++|
T Consensus 316 -------------------------------------------------~~~~~~~~~~~~--~~~~~~sgs~Dg~V~lw 344 (393)
T 4gq1_A 316 -------------------------------------------------PSLLGACPHPRY--MDYFATAHSQHGLIQLI 344 (393)
T ss_dssp -------------------------------------------------CCSSCCEECSSC--TTEEEEEETTTTEEEEE
T ss_pred -------------------------------------------------CcceeEEEccCC--CCEEEEEECCCCEEEEE
Confidence 000011122210 12233455667777777
Q ss_pred CCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEeecCCC
Q 005352 639 PEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLP 698 (701)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~~g~p 698 (701)
+......+..+..| ...|.+++++++ |++||+|+.|| |.+|+..|+.
T Consensus 345 d~~~~~~~~~~~~~-----------~~~V~svafspd-G~~LA~as~~G-v~lvrL~gf~ 391 (393)
T 4gq1_A 345 NTYEKDSNSIPIQL-----------GMPIVDFCWHQD-GSHLAIATEGS-VLLTRLMGFT 391 (393)
T ss_dssp ETTCTTCCEEEEEC-----------SSCEEEEEECTT-SSEEEEEESSE-EEEEEEGGGC
T ss_pred ECCCCcEEEEecCC-----------CCcEEEEEEcCC-CCEEEEEeCCC-eEEEEEeCcc
Confidence 77666655444333 346888899999 99999998655 7777776653
No 124
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.6e-26 Score=243.85 Aligned_cols=228 Identities=10% Similarity=0.087 Sum_probs=173.3
Q ss_pred eeeecCccccccccccceEEEEEccCccc----------------------hhhhcccCceec-cCCCcEEEEEEccCCC
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSK----------------------ELSALYKGQEIQ-AHDGSILTMKFSPDGQ 263 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~----------------------~~~~~~~~~~l~-~H~~~I~~l~fspdg~ 263 (701)
.++++++..+++++.|++|+ +...... ++........+. +|...|.+++|||+|+
T Consensus 21 v~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~ 98 (588)
T 2j04_A 21 LTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDD 98 (588)
T ss_dssp EEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSS
T ss_pred EEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCC
Confidence 45667777888899999996 4211110 000001111222 5688899999999999
Q ss_pred EEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCcccccc
Q 005352 264 YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL 343 (701)
Q Consensus 264 ~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (701)
+||+++.||.|+|||... .+
T Consensus 99 ~LAs~s~dg~V~iwd~~~--~l---------------------------------------------------------- 118 (588)
T 2j04_A 99 WMAVLSNNGNVSVFKDNK--ML---------------------------------------------------------- 118 (588)
T ss_dssp CEEEEETTSCEEEEETTE--EE----------------------------------------------------------
T ss_pred EEEEEeCCCcEEEEeCCc--ee----------------------------------------------------------
Confidence 999999999999999432 11
Q ss_pred CCCeEEEcCCc-----cCeEEEEEecCC-eEEEEECCCcEEEEECCCCee-------eeee-----cCCCCeEEEEEeeC
Q 005352 344 EKPLHEFHGHS-----GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHC-------LRVF-----PHSNYVTCVHFNPV 405 (701)
Q Consensus 344 ~~~~~~~~~h~-----~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~-------~~~~-----~h~~~V~~l~f~p~ 405 (701)
..+. |. ..|.+++|||+| +|++|+.||+|+|||+.++.. +.++ .|...|.+++|+|
T Consensus 119 ----~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP- 192 (588)
T 2j04_A 119 ----TNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE- 192 (588)
T ss_dssp ----EECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-
T ss_pred ----eecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-
Confidence 1222 33 359999999999 999999999999999998852 4554 2678999999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCcEE---EEe--cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCHVV---DWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~~~---~~~--~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
++ +++++.|++|++||+.++... ... .|...|.+++|+ |+.|++++ ++.|++||+.+++....
T Consensus 193 dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~------- 260 (588)
T 2j04_A 193 DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL------- 260 (588)
T ss_dssp TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE-------
T ss_pred Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE-------
Confidence 77 888999999999999887742 222 577899999999 68888887 69999999998775321
Q ss_pred ccCCCCCCeeEEEE--ecCCCCEEEEEECCCcEEEEeCC
Q 005352 481 KKKAPCKRITGFQF--LPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 481 ~~~~~~~~i~~l~~--~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
...|...+..+.| +| ++..+++++.+|+ ++|...
T Consensus 261 -~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 261 -KTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp -ECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEESS
T ss_pred -EcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEeec
Confidence 2247788999999 98 7789999999999 999864
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=1.7e-24 Score=231.54 Aligned_cols=248 Identities=11% Similarity=0.123 Sum_probs=191.8
Q ss_pred cCCccCeEEEEEecCC-eE-EEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEE-EEcCCcEEEEeCCCC
Q 005352 351 HGHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS-GSIDGKVRIWAVLSC 427 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~-~l-~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~s-gs~dg~v~iwd~~~~ 427 (701)
.+| ..+.+++|+|++ ++ ++++.|++|++||+.+++.+..+.+...+.+++|+| ++++|++ ++.++.|++||+.++
T Consensus 29 ~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~ 106 (391)
T 1l0q_A 29 PVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSN 106 (391)
T ss_dssp ECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTT
T ss_pred ecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECC-CCCEEEEEECCCCEEEEEECCCC
Confidence 344 358999999999 55 677799999999999999999998777999999999 8887755 446799999999999
Q ss_pred cEEEEecCCCcEEEEEEeeCCCeE-EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE-EEE
Q 005352 428 HVVDWVDIRQIVTAVCYRPDGQGG-IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV-MVS 505 (701)
Q Consensus 428 ~~~~~~~~~~~i~~i~~sp~g~~l-~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l-~~~ 505 (701)
+.+....+...+.+++|+|+++.+ ++++.++.|++||+.+++...... ....+.+++|+| ++..+ +++
T Consensus 107 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------~~~~~~~~~~~~-dg~~l~~~~ 176 (391)
T 1l0q_A 107 TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS---------VGRSPKGIAVTP-DGTKVYVAN 176 (391)
T ss_dssp EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---------CCSSEEEEEECT-TSSEEEEEE
T ss_pred eEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe---------cCCCcceEEECC-CCCEEEEEe
Confidence 988888788889999999999987 677889999999999887543211 124578999999 55555 677
Q ss_pred ECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe---CCCcEEEEeCCCCCCCCccccccccccccccCCc
Q 005352 506 CADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG---EDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNA 582 (701)
Q Consensus 506 s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs---~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (701)
+.++.|++||+.+....... .+...+.+++|+|++++|++++ .++.|++||+.+++.. ..+.
T Consensus 177 ~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~--------~~~~------ 241 (391)
T 1l0q_A 177 FDSMSISVIDTVTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT--------ARIP------ 241 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE--------EEEE------
T ss_pred CCCCEEEEEECCCCeEEEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE--------EEEe------
Confidence 78999999999865443332 3566889999999999999888 6899999999876410 0110
Q ss_pred eEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccc-cccCCCCcccCCCCccCCCCcccccc
Q 005352 583 SIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEY-VFESFPKGCATWPEEKLPALSQLSSA 652 (701)
Q Consensus 583 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~-~~~s~d~~~~~W~~~~~~~~~~~~~~ 652 (701)
.+..+..++++|+ +..+ ++++.++.+++|+.+....+..+..+
T Consensus 242 -----------------------~~~~~~~~~~s~d----g~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 242 -----------------------VGPDPAGIAVTPD----GKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp -----------------------CCSSEEEEEECTT----SSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred -----------------------cCCCccEEEEccC----CCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 0112345677886 4444 67788999999999887766655444
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.91 E-value=1.2e-22 Score=206.71 Aligned_cols=213 Identities=9% Similarity=0.050 Sum_probs=151.0
Q ss_pred CCcEEEEEEccC----CCEEEEEeCCCcEEEEEeecCeeeeee-cCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 250 DGSILTMKFSPD----GQYLASAGDDGVVRLWQVVEDERLTEV-DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 250 ~~~I~~l~fspd----g~~Lasgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.+.|++|+|+|| ++++++++.+ +++|++.+++.+... ..+... +..+.+.+.
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~-------------V~~~~~s~d-------- 167 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQ-------------VEVMTFAED-------- 167 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCE-------------EEEEEECTT--------
T ss_pred ccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCc-------------EEEEEECCC--------
Confidence 346778888888 8899998854 888998777654432 111111 111111110
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec---CC-eEEEEECCCcEEEEECCCCeeeeeec-C---CCC
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK---NN-YLLSASIDKTVRLWRVGNDHCLRVFP-H---SNY 396 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~---~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h---~~~ 396 (701)
++.+..+.+|...+..++|++ ++ +|++++.|++|+|||+.++++++++. | ...
T Consensus 168 -------------------G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~ 228 (356)
T 2w18_A 168 -------------------GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQAS 228 (356)
T ss_dssp -------------------SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CC
T ss_pred -------------------CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceee
Confidence 134556678999999999999 55 99999999999999999999999986 3 346
Q ss_pred eEEEEEeeCCCCEE------------EEEEcCCcEEEEeCCCCcEEEEe------cCCCcEEEEEEeeCCCeEEEEecCC
Q 005352 397 VTCVHFNPVDDNYF------------ISGSIDGKVRIWAVLSCHVVDWV------DIRQIVTAVCYRPDGQGGIVGSMMG 458 (701)
Q Consensus 397 V~~l~f~p~~~~~l------------~sgs~dg~v~iwd~~~~~~~~~~------~~~~~i~~i~~sp~g~~l~~gs~dg 458 (701)
+.+++|+| ++.++ ++|+.|++|++||..+++.+... +|...+.+. +.++..+++|+.|+
T Consensus 229 v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~Dg 305 (356)
T 2w18_A 229 VCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSG 305 (356)
T ss_dssp CEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTS
T ss_pred eEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCC
Confidence 88889999 88876 56888999999999999877543 333334333 33478899999999
Q ss_pred cEEEEECCCCeeeeeeeEEeecccCCCCCC-eeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 459 DCRFYNVSDNHLELDAEICVHSKKKAPCKR-ITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 459 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
+|+|||+.+++..... ..|... +..++|+| ++++|++|+.|++|+|||.
T Consensus 306 TIkIWDl~tGk~l~tL--------~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 306 TIAIWDLLLGQCTALL--------PPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CEEEEETTTCSEEEEE--------CCC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred cEEEEECCCCcEEEEe--------cCCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence 9999999998765431 123333 45689999 7999999999999999984
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=1.2e-22 Score=219.29 Aligned_cols=258 Identities=10% Similarity=0.046 Sum_probs=199.6
Q ss_pred eEEEEEc--cCccchhhhcccCceeccCCCcEEEEEEcc--------------CCCEEEEEeCC------CcEEEEEeec
Q 005352 224 RVKVYHC--KKRSKELSALYKGQEIQAHDGSILTMKFSP--------------DGQYLASAGDD------GVVRLWQVVE 281 (701)
Q Consensus 224 ~v~vw~~--~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--------------dg~~Lasgs~D------g~I~iWd~~~ 281 (701)
.+++||. ..... .....+.+|...+..+++++ .+..|+.++.+ +.|++||+..
T Consensus 94 ~i~lwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g 168 (415)
T 2hqs_A 94 AYQLVDTGGAPGTV-----LAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG 168 (415)
T ss_dssp EEEEEECSSSTTCE-----EEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS
T ss_pred EEEEEeCCCCCCCE-----EeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC
Confidence 8999998 54321 11235677888888887775 26677776664 7999999864
Q ss_pred CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE
Q 005352 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (701)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 361 (701)
. ....+.+|...|.+++
T Consensus 169 ~---------------------------------------------------------------~~~~l~~~~~~v~~~~ 185 (415)
T 2hqs_A 169 Y---------------------------------------------------------------NQFVVHRSPQPLMSPA 185 (415)
T ss_dssp C---------------------------------------------------------------SCEEEEEESSCEEEEE
T ss_pred C---------------------------------------------------------------CCEEEeCCCCcceeeE
Confidence 2 2344566888999999
Q ss_pred EecCC-eEEEEECCC---cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE-EEEcCCc--EEEEeCCCCcEEEEec
Q 005352 362 WSKNN-YLLSASIDK---TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGK--VRIWAVLSCHVVDWVD 434 (701)
Q Consensus 362 ~s~~~-~l~s~s~dg---~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~dg~--v~iwd~~~~~~~~~~~ 434 (701)
|+|++ +|++++.++ .|++||+.++++.....+...+.+++|+| ++++|+ +++.++. |++||+.+++...+..
T Consensus 186 ~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~ 264 (415)
T 2hqs_A 186 WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTD 264 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCC
T ss_pred EcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCcC
Confidence 99999 899999875 99999999998887777888999999999 998877 6666654 9999999998877778
Q ss_pred CCCcEEEEEEeeCCCeEEEEec-CC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC---
Q 005352 435 IRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD--- 508 (701)
Q Consensus 435 ~~~~i~~i~~sp~g~~l~~gs~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d--- 508 (701)
+...+.+++|+|+|+.|++++. ++ .|.+||+.+++... ...+...+..++|+| ++++|++++.+
T Consensus 265 ~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~---------l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~ 334 (415)
T 2hqs_A 265 GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR---------ITWEGSQNQDADVSS-DGKFMVMVSSNGGQ 334 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE---------CCCSSSEEEEEEECT-TSSEEEEEEECSSC
T ss_pred CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE---------EecCCCcccCeEECC-CCCEEEEEECcCCc
Confidence 8889999999999999998876 44 67777888765321 112335688999999 67888777764
Q ss_pred CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeCCCCC
Q 005352 509 SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDS---NVYMWNCIGHE 562 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg---~I~iWd~~~~~ 562 (701)
..|++||+.+..... ...+ ..+.+++|+|+|++|++++.++ .|++||+.++.
T Consensus 335 ~~i~~~d~~~~~~~~-l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 335 QHIAKQDLATGGVQV-LSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEEEETTTCCEEE-CCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred eEEEEEECCCCCEEE-ecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 589999998654422 2223 3899999999999999998877 79999987554
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=2.5e-22 Score=223.88 Aligned_cols=337 Identities=11% Similarity=0.108 Sum_probs=234.3
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEe--ecCee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV--VEDER 284 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~--~~~~~ 284 (701)
..+++.+..+++++.++.|.+||...... .+.+..+.. +.+++|+|||++|++++.|+.|++||+ .+++.
T Consensus 143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~~~-------~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAGQIALVDGDSKKI-------VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK 214 (543)
T ss_dssp SCCCGGGEEEEEEGGGTEEEEEETTTCCE-------EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred cccCCCCEEEEEEcCCCeEEEEECCCceE-------EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE
Confidence 34555566667788899999998654321 133442333 899999999999999999999999999 55543
Q ss_pred eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
+. .+. +...+..++|+|
T Consensus 215 ~~--------------------------------------------------------------~i~-~g~~p~~va~sp 231 (543)
T 1nir_A 215 VA--------------------------------------------------------------EIK-IGIEARSVESSK 231 (543)
T ss_dssp EE--------------------------------------------------------------EEE-CCSEEEEEEECC
T ss_pred EE--------------------------------------------------------------EEe-cCCCcceEEeCC
Confidence 22 223 234578999999
Q ss_pred ----CC-eEEEEE-CCCcEEEEECCCCeeeeeecC------------CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 365 ----NN-YLLSAS-IDKTVRLWRVGNDHCLRVFPH------------SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 365 ----~~-~l~s~s-~dg~I~iWd~~~~~~~~~~~h------------~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
++ +|++++ .+++|.+||..+++++..+.. ...+..+.++|....++++...++.|.+||+.+
T Consensus 232 ~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~ 311 (543)
T 1nir_A 232 FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 311 (543)
T ss_dssp STTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred CcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence 98 777777 489999999999999888752 237899999994455566777889999999987
Q ss_pred CcEEE--EecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 427 CHVVD--WVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 427 ~~~~~--~~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
.+.+. .+.+...+..+.|+|+|+++++++ .+++|.+||+.++++..... .....|......+ ++|+.+..++
T Consensus 312 ~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~----~g~~ph~g~g~~~-~~p~~g~~~~ 386 (543)
T 1nir_A 312 IDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD----VGKTPHPGRGANF-VHPKYGPVWS 386 (543)
T ss_dssp SSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE----CSSSBCCTTCEEE-EETTTEEEEE
T ss_pred CCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec----cCCCCCCCCCccc-CCCCCccEEE
Confidence 65432 455667788999999999877665 58999999999987654321 1122333333333 4674466666
Q ss_pred EEE-CCCcEEEEeCCc-------cceeeecccCCCCeEEEEEecCCCEEEEEe-------CCCcEEEEeCCCCCCCCccc
Q 005352 504 VSC-ADSQVRILQGPN-------VIGKYKGLRRSGNQLSACFTSDGKHIVSAG-------EDSNVYMWNCIGHEEPAHDQ 568 (701)
Q Consensus 504 ~~s-~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs-------~Dg~I~iWd~~~~~~~~~~~ 568 (701)
++. .|++|.+||..+ .........+...+..++++|+|++|++++ .+++|.+||+.+.+.....
T Consensus 387 s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~- 465 (543)
T 1nir_A 387 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV- 465 (543)
T ss_dssp EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE-
T ss_pred eccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEE-
Confidence 665 589999999876 444444444667788899999999999987 2779999999988732000
Q ss_pred cccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcccccc-----CCCCcccCCCCccC
Q 005352 569 AKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFE-----SFPKGCATWPEEKL 643 (701)
Q Consensus 569 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~-----s~d~~~~~W~~~~~ 643 (701)
..+ -.|.|.. .....+..++|+|+ +..+... +.++.|.+||..++
T Consensus 466 -~~v-------------~~~~~~~------------~~~~~~~~~~~~~~----g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 466 -LPI-------------AEWADLG------------EGAKRVVQPEYNKR----GDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp -ECH-------------HHHHCCC------------SSCCEEEEEEECSS----SSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred -eec-------------hhhcccC------------CCCCceEeccCCCC----CCEEEEEeecCCCCCCeEEEEECCCc
Confidence 000 0011110 00123445678887 4444432 24788999999998
Q ss_pred CCCcccc
Q 005352 644 PALSQLS 650 (701)
Q Consensus 644 ~~~~~~~ 650 (701)
+++..+.
T Consensus 516 ~~~~~i~ 522 (543)
T 1nir_A 516 KLKAVVK 522 (543)
T ss_dssp EEEEEEC
T ss_pred eEEEeec
Confidence 8776664
No 129
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=7.4e-22 Score=238.25 Aligned_cols=410 Identities=11% Similarity=0.031 Sum_probs=264.3
Q ss_pred ceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC------CcEEEEEe
Q 005352 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD------GVVRLWQV 279 (701)
Q Consensus 206 ~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D------g~I~iWd~ 279 (701)
+....++++.+++.+. +.|.+|+..... .+.+.+|.+.|.+++|||||++||+++.+ ..|.+|++
T Consensus 17 ~~~~~~S~~~iaf~~~-~~l~~~~~~gg~--------~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~ 87 (1045)
T 1k32_A 17 LLNPDIHGDRIIFVCC-DDLWEHDLKSGS--------TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG 87 (1045)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCC--------EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred EeCcEEeCCEEEEEEC-CcEEEEECCCCc--------EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEEC
Confidence 3344445666666554 689999875432 13567799999999999999999988654 37999998
Q ss_pred ecCeeeeeecCCCCCC-------ceeEEeeccCCCcceeeecc-c--cceeeEEeeecC---------Ccc-------EE
Q 005352 280 VEDERLTEVDIPEIDP-------SCIYFTVNHLSELKPLFMDK-E--KISILKSLRRTS---------ESA-------CV 333 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~---------~~~-------~~ 333 (701)
.+++ ...+..+.... ..+.|++++. +....... . ....+..+.... ... .+
T Consensus 88 ~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l 164 (1045)
T 1k32_A 88 ENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRR 164 (1045)
T ss_dssp TTTE-EEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEE
T ss_pred CCCC-eEEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEE
Confidence 8776 33343332222 3344444332 11111100 0 000011100000 000 00
Q ss_pred EcC-----------------Ccccc-ccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCC-CeeeeeecCC
Q 005352 334 VFP-----------------PKVFR-ILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFPHS 394 (701)
Q Consensus 334 ~~~-----------------~~~~~-~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~-~~~~~~~~h~ 394 (701)
... ..+|. ........+.+|...+.++.|+++..+++++.++++.||.+.. +.....+.+.
T Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~ 244 (1045)
T 1k32_A 165 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSF 244 (1045)
T ss_dssp EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCC
T ss_pred EEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCC
Confidence 000 00000 0113345568899999999999886667778889999998653 3334444433
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec-----------CCCcEEEEEEe-eCCCeEEEEecCCcEEE
Q 005352 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-----------IRQIVTAVCYR-PDGQGGIVGSMMGDCRF 462 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-----------~~~~i~~i~~s-p~g~~l~~gs~dg~v~i 462 (701)
..+...+|+| ++++|+.+. ++.|++||+...++..... +...+.+++|+ |+|+.|++++ ++.+.+
T Consensus 245 ~~~~~~~~Sp-DG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~ 321 (1045)
T 1k32_A 245 TDYYPRHLNT-DGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFI 321 (1045)
T ss_dssp CSSCEEEEEE-SSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEE
T ss_pred CCcceeeEcC-CCCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEE
Confidence 4567789999 999888874 8999999996555443222 23368899999 9999999887 789999
Q ss_pred EECCCCeeeeeeeEEeecccCCCCC-CeeEEEEecCCCCEEEEEECCCcEE-EEeCCccceeeecccCCCCeEEEEEecC
Q 005352 463 YNVSDNHLELDAEICVHSKKKAPCK-RITGFQFLPQDSSKVMVSCADSQVR-ILQGPNVIGKYKGLRRSGNQLSACFTSD 540 (701)
Q Consensus 463 ~d~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~~p~~~~~l~~~s~dg~I~-iwd~~~~~~~~~~~~~~~~v~~l~~s~d 540 (701)
|++..+.... ...+.. .+..++|+ ++..++.++.++.+. +||.......... .+...+..++|+||
T Consensus 322 ~~~~~~~~~~---------~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpD 389 (1045)
T 1k32_A 322 QDVSGTYVLK---------VPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRN 389 (1045)
T ss_dssp ECTTSSBEEE---------CSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTT
T ss_pred EcCCCCceEE---------ccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCC
Confidence 9998765321 122334 68889998 678888888888888 8998754332222 46788999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCcc
Q 005352 541 GKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARF 620 (701)
Q Consensus 541 g~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~ 620 (701)
|++|++++.++.|++||+.+++.... . ......+..++|+|+
T Consensus 390 G~~la~~~~~~~v~~~d~~tg~~~~~--------~----------------------------~~~~~~v~~~~~SpD-- 431 (1045)
T 1k32_A 390 GKFAVVANDRFEIMTVDLETGKPTVI--------E----------------------------RSREAMITDFTISDN-- 431 (1045)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEE--------E----------------------------ECSSSCCCCEEECTT--
T ss_pred CCEEEEECCCCeEEEEECCCCceEEe--------c----------------------------cCCCCCccceEECCC--
Confidence 99999999999999999988762100 0 001223455678887
Q ss_pred ccCccccccCCC----------CcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEe
Q 005352 621 SLGQEYVFESFP----------KGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIR 690 (701)
Q Consensus 621 ~~~~~~~~~s~d----------~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Ir 690 (701)
+..++..+.+ +.+.+|+..... +..+..+ ...+..++++++ |+.|++++.++..+
T Consensus 432 --G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~-----------~~~~~~~~~spd-G~~l~~~s~~~~~~ 496 (1045)
T 1k32_A 432 --SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTE-----------NSHDYAPAFDAD-SKNLYYLSYRSLDP 496 (1045)
T ss_dssp --SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCS-----------SSBEEEEEECTT-SCEEEEEESCCCCC
T ss_pred --CCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCC-----------CcccCCceEcCC-CCEEEEEecccCCc
Confidence 4555544433 478999987655 4444333 123445678888 99999999999888
Q ss_pred EEeec
Q 005352 691 SFLNY 695 (701)
Q Consensus 691 vw~~~ 695 (701)
+|...
T Consensus 497 ~~~~~ 501 (1045)
T 1k32_A 497 SPDRV 501 (1045)
T ss_dssp EECSS
T ss_pred Ccchh
Confidence 88643
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=1.4e-21 Score=204.24 Aligned_cols=273 Identities=12% Similarity=0.185 Sum_probs=189.1
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC-CcEEEEEee--cCeeeeeecCCCCCC
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD-GVVRLWQVV--EDERLTEVDIPEIDP 295 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-g~I~iWd~~--~~~~~~~~~~~~~~~ 295 (701)
++.++.|++|++.... .... .....|...+.+++|+|+|++|++++.+ +.|.+|++. +++.
T Consensus 11 ~~~~~~v~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~----------- 74 (343)
T 1ri6_A 11 SPESQQIHVWNLNHEG-ALTL----TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL----------- 74 (343)
T ss_dssp EGGGTEEEEEEECTTS-CEEE----EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-----------
T ss_pred CCCCCeEEEEEECCCC-cEEE----eeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-----------
Confidence 4679999999985321 1111 1122477789999999999999998887 999999997 3321
Q ss_pred ceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC-
Q 005352 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI- 373 (701)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~- 373 (701)
+.+..+..+. .+..++|+|++ +|++++.
T Consensus 75 -------------------------------------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~ 104 (343)
T 1ri6_A 75 -------------------------------------------------TFAAESALPG-SLTHISTDHQGQFVFVGSYN 104 (343)
T ss_dssp -------------------------------------------------EEEEEEECSS-CCSEEEECTTSSEEEEEETT
T ss_pred -------------------------------------------------eeccccccCC-CCcEEEEcCCCCEEEEEecC
Confidence 1112223233 67899999999 6766654
Q ss_pred CCcEEEEEC---CCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCCC-CcEEE-----Ee-cCCCcEEEE
Q 005352 374 DKTVRLWRV---GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLS-CHVVD-----WV-DIRQIVTAV 442 (701)
Q Consensus 374 dg~I~iWd~---~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~~-~~~~~-----~~-~~~~~i~~i 442 (701)
++.|.+||+ ...+.+..+.....+.+++|+| +++++++++ .++.|++||+.+ ++... .. .....+..+
T Consensus 105 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (343)
T 1ri6_A 105 AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM 183 (343)
T ss_dssp TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred CCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceE
Confidence 889999999 4445566666666799999999 888888777 899999999987 65432 11 234578899
Q ss_pred EEeeCCCeEEEEe-cCCcEEEEECCC--CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE-EEECCCcEEEEeCCc
Q 005352 443 CYRPDGQGGIVGS-MMGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM-VSCADSQVRILQGPN 518 (701)
Q Consensus 443 ~~sp~g~~l~~gs-~dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~-~~s~dg~I~iwd~~~ 518 (701)
+|+|+++++++++ .++.|.+|++.. +....................+..++|+| ++.+|+ +...++.|.+||+..
T Consensus 184 ~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 184 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCEEEEEEEcC
Confidence 9999999776655 789999999954 33322111111111112234677899999 566665 455799999999872
Q ss_pred --c-ceeeecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 005352 519 --V-IGKYKGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCI 559 (701)
Q Consensus 519 --~-~~~~~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~ 559 (701)
. ............+..++|+|+|++|++++ .++.|.+|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 263 DGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp TSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 1 11222222233488999999999998887 68999999665
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.89 E-value=8.6e-21 Score=204.76 Aligned_cols=235 Identities=11% Similarity=0.048 Sum_probs=186.3
Q ss_pred ceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCC---cEEEEEeecCeeeeeecCCCCCCceeE
Q 005352 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG---VVRLWQVVEDERLTEVDIPEIDPSCIY 299 (701)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg---~I~iWd~~~~~~~~~~~~~~~~~~~~~ 299 (701)
+.|++|+..... .+.+.+|.+.|.+++|+|||++||+++.|+ .|++||+.+++.
T Consensus 159 ~~i~i~d~~g~~--------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--------------- 215 (415)
T 2hqs_A 159 YELRVSDYDGYN--------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------------- 215 (415)
T ss_dssp EEEEEEETTSCS--------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---------------
T ss_pred ceEEEEcCCCCC--------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE---------------
Confidence 799999975321 245777999999999999999999999885 999999987642
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE-EEECCCc-
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDKT- 376 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s~dg~- 376 (701)
..+..|...+.+++|+|++ +|+ +++.++.
T Consensus 216 ------------------------------------------------~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~ 247 (415)
T 2hqs_A 216 ------------------------------------------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSL 247 (415)
T ss_dssp ------------------------------------------------EEEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred ------------------------------------------------EEeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence 1234577789999999999 666 6666655
Q ss_pred -EEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEc-CC--cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEE
Q 005352 377 -VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (701)
Q Consensus 377 -I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~-dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 452 (701)
|++||+.+++......|...+.+++|+| ++++|++++. ++ .|.+||+.+++......+...+.+++|+|+|++|+
T Consensus 248 ~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~ 326 (415)
T 2hqs_A 248 NLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV 326 (415)
T ss_dssp EEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEE
T ss_pred eEEEEECCCCCEEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEE
Confidence 9999999988866666888999999999 9999988886 44 68888999887666666777899999999999999
Q ss_pred EEecC---CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC---cEEEEeCCccceeeecc
Q 005352 453 VGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS---QVRILQGPNVIGKYKGL 526 (701)
Q Consensus 453 ~gs~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg---~I~iwd~~~~~~~~~~~ 526 (701)
+++.+ ..|.+||+.+++... + ..+ ..+.+++|+| ++..|++++.++ .|++||+.... .....
T Consensus 327 ~~~~~~g~~~i~~~d~~~~~~~~-----l----~~~-~~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~ 394 (415)
T 2hqs_A 327 MVSSNGGQQHIAKQDLATGGVQV-----L----SST-FLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRF-KARLP 394 (415)
T ss_dssp EEEECSSCEEEEEEETTTCCEEE-----C----CCS-SSCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCC-EEECC
T ss_pred EEECcCCceEEEEEECCCCCEEE-----e----cCC-CCcCCeEEcC-CCCEEEEEEcCCCccEEEEEECCCCc-EEEee
Confidence 88864 589999999876421 1 111 2789999999 788888888766 79999986432 33444
Q ss_pred cCCCCeEEEEEecCC
Q 005352 527 RRSGNQLSACFTSDG 541 (701)
Q Consensus 527 ~~~~~v~~l~~s~dg 541 (701)
.+.+.|.+++|+|.-
T Consensus 395 ~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 395 ATDGQVKFPAWSPYL 409 (415)
T ss_dssp CSSSEEEEEEECCCC
T ss_pred CCCCCCcCCcccccc
Confidence 578899999999964
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.87 E-value=2.5e-20 Score=207.69 Aligned_cols=328 Identities=11% Similarity=0.054 Sum_probs=224.8
Q ss_pred EEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcC
Q 005352 257 KFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFP 336 (701)
Q Consensus 257 ~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (701)
.|+|++.++++++.|++|.+||..+++.+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~-------------------------------------------------- 173 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVK-------------------------------------------------- 173 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEE--------------------------------------------------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEE--------------------------------------------------
Confidence 378999999999999999999998875433
Q ss_pred CccccccCCCeEEEc-CCccCeEEEEEecCC-eEEEEECCCcEEEEEC--CCCeeeeeecCCCCeEEEEEeeC---CCCE
Q 005352 337 PKVFRILEKPLHEFH-GHSGEILDLSWSKNN-YLLSASIDKTVRLWRV--GNDHCLRVFPHSNYVTCVHFNPV---DDNY 409 (701)
Q Consensus 337 ~~~~~~~~~~~~~~~-~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~--~~~~~~~~~~h~~~V~~l~f~p~---~~~~ 409 (701)
.+. +|. +..++|+|++ +|++++.|++|++||+ .+++++..+.+...+..++|+|. ++++
T Consensus 174 ------------~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~ 239 (543)
T 1nir_A 174 ------------VIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY 239 (543)
T ss_dssp ------------EEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE
T ss_pred ------------EEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCE
Confidence 233 333 7899999999 9999999999999999 89999999988888999999982 5677
Q ss_pred EEEEE-cCCcEEEEeCCCCcEEEEecC------------CCcEEEEEEeeCCCeE-EEEecCCcEEEEECCCCeeeeeee
Q 005352 410 FISGS-IDGKVRIWAVLSCHVVDWVDI------------RQIVTAVCYRPDGQGG-IVGSMMGDCRFYNVSDNHLELDAE 475 (701)
Q Consensus 410 l~sgs-~dg~v~iwd~~~~~~~~~~~~------------~~~i~~i~~sp~g~~l-~~gs~dg~v~i~d~~~~~~~~~~~ 475 (701)
+++++ .+++|.+||..+.+++..+.. ...+..+.++|++..+ ++...++.|.+||+.+.+......
T Consensus 240 l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~ 319 (543)
T 1nir_A 240 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS 319 (543)
T ss_dssp EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEE
T ss_pred EEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEE
Confidence 77776 589999999999988765542 2268899999977654 556678999999998765332111
Q ss_pred EEeecccCCCCCCeeEEEEecCCCCEEEEE-ECCCcEEEEeCCccceeeecc----cCCCCeEEEEEecC-CCEEEEEe-
Q 005352 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQVRILQGPNVIGKYKGL----RRSGNQLSACFTSD-GKHIVSAG- 548 (701)
Q Consensus 476 ~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~-s~dg~I~iwd~~~~~~~~~~~----~~~~~v~~l~~s~d-g~~l~sgs- 548 (701)
+. +...+.++.|+| ++++++++ ..+++|.+||..+........ .|.+....+ ++|+ +.+++++.
T Consensus 320 i~-------~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~ 390 (543)
T 1nir_A 320 IG-------AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHL 390 (543)
T ss_dssp EE-------CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred ec-------cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccC
Confidence 11 234577899999 66766555 458999999998654433222 144333333 5787 66677775
Q ss_pred CCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccc
Q 005352 549 EDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVF 628 (701)
Q Consensus 549 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~ 628 (701)
.|++|.+|++.+...+. ...+.++.+.. .......+.++|+ +..+++
T Consensus 391 ~d~~V~v~d~~~~~~~~-~~~~~v~~l~~----------------------------~g~~~~~v~~~pd----g~~l~v 437 (543)
T 1nir_A 391 GDGSISLIGTDPKNHPQ-YAWKKVAELQG----------------------------QGGGSLFIKTHPK----SSHLYV 437 (543)
T ss_dssp SSSEEEEEECCTTTCTT-TBTSEEEEEEC----------------------------SCSCCCCEECCTT----CCEEEE
T ss_pred CCceEEEEEeCCCCCch-hcCeEEEEEEc----------------------------CCCCceEEEcCCC----CCcEEE
Confidence 68999999998743210 00111111110 1122344667887 556665
Q ss_pred cC-------CCCcccCCCCccCCCC-ccccccccchhhhhhhhhcccccccccCCCccEEEEec-----CCCeEeEEee
Q 005352 629 ES-------FPKGCATWPEEKLPAL-SQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAG-----WDGRIRSFLN 694 (701)
Q Consensus 629 ~s-------~d~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg-----~DG~Irvw~~ 694 (701)
++ .++.|++|+..++... ..++... ..+... ....+..+.++++ |+.|..+. .|+.|.||+.
T Consensus 438 ~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~--~~~~~~-~~~~~~~~~~~~~-g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 438 DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE--WADLGE-GAKRVVQPEYNKR-GDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH--HHCCCS-SCCEEEEEEECSS-SSEEEEEEECCTTSCCEEEEEET
T ss_pred ecCCCCCcccCceEEEEECCCCCCCeEEeechh--hcccCC-CCCceEeccCCCC-CCEEEEEeecCCCCCCeEEEEEC
Confidence 54 2678999999988865 2221110 000000 0135667789999 87777663 3799999984
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=3.9e-21 Score=223.64 Aligned_cols=261 Identities=11% Similarity=0.095 Sum_probs=181.9
Q ss_pred CCcEEEEEEccCCCEEEEEeC-CC-----cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 250 DGSILTMKFSPDGQYLASAGD-DG-----VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~-Dg-----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
...|.+++|||||++|++++. |+ .|++||+.+++....+......+....+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~---------------------- 93 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLS---------------------- 93 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-----------------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhccccccccc----------------------
Confidence 456999999999999999998 88 89999998876544332221110000000
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC---eeeeeecCCCCeEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND---HCLRVFPHSNYVTC 399 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~---~~~~~~~h~~~V~~ 399 (701)
...... .....+. ....|.+++|+|+| +|++++. +.|++||+.++ +......+...+.+
T Consensus 94 -----------~~~~~~----~~~~~~~-~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~ 156 (741)
T 2ecf_A 94 -----------DEEKAR----RERQRIA-AMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATD 156 (741)
T ss_dssp -----------------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEE
T ss_pred -----------chhhhh----hhhhhhc-cccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCccccc
Confidence 000000 0000111 12357889999999 7888776 99999999988 66555567788999
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc-----------------EEEEEEeeCCCeEEEEecCC----
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI-----------------VTAVCYRPDGQGGIVGSMMG---- 458 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-----------------i~~i~~sp~g~~l~~gs~dg---- 458 (701)
++|+| ++++|++++ ++.|++||+.+++.......... +..++|+|||+.|++++.++
T Consensus 157 ~~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~ 234 (741)
T 2ecf_A 157 AKLSP-KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVP 234 (741)
T ss_dssp EEECT-TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSC
T ss_pred ccCCC-CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCc
Confidence 99999 999999887 56999999999877655433221 47899999999999988765
Q ss_pred -----------------------------cEEEEECCC-CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-
Q 005352 459 -----------------------------DCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA- 507 (701)
Q Consensus 459 -----------------------------~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~- 507 (701)
.|.+||+.+ ++.... . ....+...+..++| | +++.|++++.
T Consensus 235 ~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~-----~-~~~~~~~~~~~~~~-p-Dg~~l~~~~~~ 306 (741)
T 2ecf_A 235 VQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWI-----D-LGKEQDIYLARVNW-R-DPQHLSFQRQS 306 (741)
T ss_dssp EEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEE-----C-CCSCSSEEEEEEEE-E-ETTEEEEEEEE
T ss_pred eEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEe-----c-CCCCcceEEEEEEe-C-CCCEEEEEEec
Confidence 788899887 653211 0 01134567899999 9 6777776654
Q ss_pred ----CCcEEEEeCCccceeeecccCCC----CeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 508 ----DSQVRILQGPNVIGKYKGLRRSG----NQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 508 ----dg~I~iwd~~~~~~~~~~~~~~~----~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
+..|++||..+.........+.. .+..++|+|||+++++++.||.+.||.++
T Consensus 307 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 307 RDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp TTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred ccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 56799999876543332222222 44688999999999999999988888765
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=1.3e-19 Score=218.54 Aligned_cols=320 Identities=10% Similarity=0.035 Sum_probs=215.6
Q ss_pred eeeecCcccccccccc------ceEEEEEccCccchhhhcccCceeccCCCcE-------EEEEEccCCCEEEEEeCC--
Q 005352 207 ERVRLNEEDAMFCSKV------QRVKVYHCKKRSKELSALYKGQEIQAHDGSI-------LTMKFSPDGQYLASAGDD-- 271 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d------~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I-------~~l~fspdg~~Lasgs~D-- 271 (701)
.++++++..+++++.+ ..|.+|+..... .+.+..|...+ ..++|+|||+++++++.+
T Consensus 58 ~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~--------~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~ 129 (1045)
T 1k32_A 58 ARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE--------IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQP 129 (1045)
T ss_dssp EEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE--------EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSS
T ss_pred eEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC--------eEEcccCCCcccccccccccccCCCCCEEEEEECCcCC
Confidence 3566677778876543 478888765421 13566788888 999999999988888755
Q ss_pred ----CcEEEEEeecCeeeeeecCCCCCCceeEEee---------------------------------------ccCCCc
Q 005352 272 ----GVVRLWQVVEDERLTEVDIPEIDPSCIYFTV---------------------------------------NHLSEL 308 (701)
Q Consensus 272 ----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~ 308 (701)
..|.+|++.+++...... . ....+.+.+ .+...+
T Consensus 130 ~~~~~~l~~~~~~~g~~~~l~~-~--~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v 206 (1045)
T 1k32_A 130 FSSMTCLYRVENDGINFVPLNL-G--PATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHV 206 (1045)
T ss_dssp STTCCEEEEEEGGGTEEEECCS-C--SCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCC
T ss_pred CcccceEEEEECCCCCeEEecC-C--CcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcc
Confidence 357777776665332111 1 111111111 000001
Q ss_pred ceeeeccccceeeEEeeecCCccEEEcCCccccc--cCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC
Q 005352 309 KPLFMDKEKISILKSLRRTSESACVVFPPKVFRI--LEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND 385 (701)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~ 385 (701)
....+.+. .++..... +.. ..+|.+ .......+..|. .+..++|+|+| .|+.+ .++.|.+||+...
T Consensus 207 ~~~~~s~d--~l~~~~~~--dg~-----~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~ 275 (1045)
T 1k32_A 207 SSPVIVGH--RIYFITDI--DGF-----GQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE 275 (1045)
T ss_dssp EEEEEETT--EEEEEECT--TSS-----CEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC
T ss_pred cceEEeCC--EEEEEEec--cCc-----eEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce
Confidence 11111111 00000000 000 012221 123445555554 46678999999 67766 5899999999544
Q ss_pred eeeeeec------------CCCCeEEEEEe-eCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCC-cEEEEEEeeCCCeE
Q 005352 386 HCLRVFP------------HSNYVTCVHFN-PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGG 451 (701)
Q Consensus 386 ~~~~~~~------------h~~~V~~l~f~-p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-~i~~i~~sp~g~~l 451 (701)
... .+. |...+.+++|+ | ++++|++++ ++.|.+|++.+++......+.. .+..++|+ +|+.|
T Consensus 276 ~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 276 KIE-KIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp CEE-ECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEE
T ss_pred Eee-eeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeE
Confidence 433 433 23368999999 9 999888887 8899999999888777666777 89999999 99999
Q ss_pred EEEecCCcEE-EEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCC
Q 005352 452 IVGSMMGDCR-FYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSG 530 (701)
Q Consensus 452 ~~gs~dg~v~-i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~ 530 (701)
+.++.++.+. +|++.++.... ...+...+..++|+| +++.|++++.++.|++||+.+.........|..
T Consensus 352 ~~~s~~~~l~~~~d~~~~~~~~---------l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~ 421 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGKAEK---------FEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREA 421 (1045)
T ss_dssp EEEETTEEEEEEEETTTCCEEE---------CCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred EEEECCCceEEEEECCCCCceE---------ecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCC
Confidence 9998888888 89998765321 113456789999999 789999999999999999986554444335778
Q ss_pred CeEEEEEecCCCEEEEEeCCC----------cEEEEeCCCCC
Q 005352 531 NQLSACFTSDGKHIVSAGEDS----------NVYMWNCIGHE 562 (701)
Q Consensus 531 ~v~~l~~s~dg~~l~sgs~Dg----------~I~iWd~~~~~ 562 (701)
.+.+++|+|||++|++++.++ .|++||+.+++
T Consensus 422 ~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 422 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 889999999999999887654 89999998765
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=2.8e-20 Score=189.40 Aligned_cols=251 Identities=14% Similarity=0.105 Sum_probs=183.9
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec-CeeeeeecCCCCCCce
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE-DERLTEVDIPEIDPSC 297 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~-~~~~~~~~~~~~~~~~ 297 (701)
.+.++.|++|+...... ..+..|.+.|.+++|+|+|++|++++ ++.|.+||+.+ ++...
T Consensus 18 ~~~~~~i~~~d~~~~~~--------~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~----------- 77 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKM--------RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK----------- 77 (297)
T ss_dssp CCCCEEEEEEETTTTEE--------EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE-----------
T ss_pred CCcceeEEEEeCCCCce--------eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE-----------
Confidence 45789999999754321 23456899999999999999999987 78999999987 54211
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCC-ccCeEEEEEecCC-eEEEEE--C
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH-SGEILDLSWSKNN-YLLSAS--I 373 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~l~~s~~~-~l~s~s--~ 373 (701)
.+.+| ...|.+++|+|++ +|++++ .
T Consensus 78 ---------------------------------------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 106 (297)
T 2ojh_A 78 ---------------------------------------------------VDTGFATICNNDHGISPDGALYAISDKVE 106 (297)
T ss_dssp ---------------------------------------------------CCCTTCCCBCSCCEECTTSSEEEEEECTT
T ss_pred ---------------------------------------------------eccccccccccceEECCCCCEEEEEEeCC
Confidence 11223 3578889999999 888888 3
Q ss_pred CCcEEEE--ECCCCeeeeeecCCCCeEEEEEeeCCCCEEE-EEEcCCcEEEEeC--CCCcEEEEecCCCcEEEEEEeeCC
Q 005352 374 DKTVRLW--RVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGKVRIWAV--LSCHVVDWVDIRQIVTAVCYRPDG 448 (701)
Q Consensus 374 dg~I~iW--d~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~dg~v~iwd~--~~~~~~~~~~~~~~i~~i~~sp~g 448 (701)
++.+.|| ++.+++ ...+.+...+.+++|+| ++++|+ ++..++.++||++ .+++......+...+.+++|+|++
T Consensus 107 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 184 (297)
T 2ojh_A 107 FGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG 184 (297)
T ss_dssp TSSCEEEEEETTCCC-CEECCSSSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTS
T ss_pred CCcceEEEEECCCCc-eEEeecCCCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCC
Confidence 3455555 445554 34455455699999999 888776 7888999999984 556666667778889999999999
Q ss_pred CeEEEEe-cCCcEEEEECCC-CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-----------CcEEEEe
Q 005352 449 QGGIVGS-MMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----------SQVRILQ 515 (701)
Q Consensus 449 ~~l~~gs-~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-----------g~I~iwd 515 (701)
+.|++++ .++.+++|++.. ..... ....+...+..+.|+| ++.+|++++.+ +.|++||
T Consensus 185 ~~l~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 185 RWIYFNSSRTGQMQIWRVRVDGSSVE--------RITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCEE--------ECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred CEEEEEecCCCCccEEEECCCCCCcE--------EEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence 9888766 588999998862 22111 1122345688899999 67888777765 5699999
Q ss_pred CCccce--eeecccCCCCeEEEEEecCCCEEEEEeCCC
Q 005352 516 GPNVIG--KYKGLRRSGNQLSACFTSDGKHIVSAGEDS 551 (701)
Q Consensus 516 ~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg 551 (701)
+.+... ......|...+..++|+|+|++|++++.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 256 MDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 875433 333335778899999999999998887653
No 136
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=1.6e-19 Score=189.69 Aligned_cols=272 Identities=11% Similarity=0.106 Sum_probs=184.0
Q ss_pred ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC---CCcEEEEEeecCeeeeeecCCCCCCce
Q 005352 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD---DGVVRLWQVVEDERLTEVDIPEIDPSC 297 (701)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 297 (701)
.++.|.+|.++.....+... ....+...+..++|+|+|+ |++++. ++.|.+|++.+++.
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~----~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~------------- 75 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTND----GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA------------- 75 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEE----EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------------
T ss_pred CCCCEEEEEEcCCCCeEEEe----eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------------
Confidence 46678999887543333221 1234556778899999999 555544 68999999976542
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE-CCC
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS-IDK 375 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s-~dg 375 (701)
+.+..+..+...+..++|+|++ +|++++ .++
T Consensus 76 -----------------------------------------------~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~ 108 (347)
T 3hfq_A 76 -----------------------------------------------HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKG 108 (347)
T ss_dssp -----------------------------------------------EEEEEEEEESCCCSEEEEETTTTEEEEEETTTT
T ss_pred -----------------------------------------------EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 1122233456678899999999 788777 689
Q ss_pred cEEEEECCC-C--eeeeeecCC----------CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC-CCcEEEE----ecCCC
Q 005352 376 TVRLWRVGN-D--HCLRVFPHS----------NYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-SCHVVDW----VDIRQ 437 (701)
Q Consensus 376 ~I~iWd~~~-~--~~~~~~~h~----------~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~-~~~~~~~----~~~~~ 437 (701)
.|.+|++.. + ..+..+.+. ..+.+++|+| +++++++...++.|++|++. +++.... .....
T Consensus 109 ~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 187 (347)
T 3hfq_A 109 TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF 187 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence 999999963 2 333333322 2488999999 88866666678899999998 5544322 12234
Q ss_pred cEEEEEEeeCCCeEEE-EecCCcEEEEECCC--CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE-EEEECCCcEEE
Q 005352 438 IVTAVCYRPDGQGGIV-GSMMGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV-MVSCADSQVRI 513 (701)
Q Consensus 438 ~i~~i~~sp~g~~l~~-gs~dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l-~~~s~dg~I~i 513 (701)
.+..++|+|+|+++++ +..++.+.+|++.. +.+.....+............+..++|+| ++++| ++...++.|.+
T Consensus 188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEE
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEE
Confidence 6788999999997666 46688999999874 44332222211111111224588999999 56655 55667999999
Q ss_pred EeCCc---cceeeecccCCCCeEEEEEecCCCEEEEEeCC-CcEEEEeCC
Q 005352 514 LQGPN---VIGKYKGLRRSGNQLSACFTSDGKHIVSAGED-SNVYMWNCI 559 (701)
Q Consensus 514 wd~~~---~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D-g~I~iWd~~ 559 (701)
|++.. .........+...+..++|+|+|++|++++.+ +.|.+|+++
T Consensus 267 ~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 267 FAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 99862 12222222245568899999999999888765 899999554
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=3.8e-19 Score=185.26 Aligned_cols=270 Identities=9% Similarity=0.086 Sum_probs=187.5
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEeecCeeeeeecCCCCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDERLTEVDIPEID 294 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~~~~~~~~~~~~~~ 294 (701)
+++...++.|.+|+....... ..+..+...+ +++|+|+|++|++++. ++.|.+||+.+++..
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~--------- 75 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEIL-------NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK--------- 75 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCEE-------EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE---------
T ss_pred EEEecCCCeEEEEeCccccee-------eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee---------
Confidence 455778899999997543221 1233455667 9999999997776666 899999999876420
Q ss_pred CceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC
Q 005352 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI 373 (701)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~ 373 (701)
...+..+.....+++|+|++ +|+++..
T Consensus 76 ----------------------------------------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 103 (331)
T 3u4y_A 76 ----------------------------------------------------VVAIQEGQSSMADVDITPDDQFAVTVTG 103 (331)
T ss_dssp ----------------------------------------------------EEEEEECSSCCCCEEECTTSSEEEECCC
T ss_pred ----------------------------------------------------EEecccCCCCccceEECCCCCEEEEecC
Confidence 22233344555558999999 7775444
Q ss_pred CC---cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEE-EEEEcCCc-EEEEeCCCCcEE-----EEecCCCcEEEEE
Q 005352 374 DK---TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF-ISGSIDGK-VRIWAVLSCHVV-----DWVDIRQIVTAVC 443 (701)
Q Consensus 374 dg---~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l-~sgs~dg~-v~iwd~~~~~~~-----~~~~~~~~i~~i~ 443 (701)
++ .|.+||+.+++.+..+.....+.+++|+| +++++ ++...++. |.+|++.....+ ........+..++
T Consensus 104 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 182 (331)
T 3u4y_A 104 LNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNIT 182 (331)
T ss_dssp SSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEE
T ss_pred CCCcccEEEEECCCCCeEEEEECCCCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceE
Confidence 42 89999999999999888777889999999 87744 55556688 999998754322 2334456689999
Q ss_pred EeeCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCccce
Q 005352 444 YRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVIG 521 (701)
Q Consensus 444 ~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~~~ 521 (701)
|+|+|+++++++ .++.|.+||+.+++...... .+. ....+..++|+| ++++++++. .++.|.+||..+...
T Consensus 183 ~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~-~~~-----~~~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 183 FTPDGNFAFVANLIGNSIGILETQNPENITLLN-AVG-----TNNLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp ECTTSSEEEEEETTTTEEEEEECSSTTSCEEEE-EEE-----CSSCCCCEEECT-TSSEEEEECSSEEEEEEEETTTTEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEECCCCcccceee-ecc-----CCCCCceEEECC-CCCEEEEEEcCCCEEEEEECCCCce
Confidence 999999766554 68899999998776511000 111 125567899999 677665554 578899999875443
Q ss_pred ee----ecc-----cCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCC
Q 005352 522 KY----KGL-----RRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 522 ~~----~~~-----~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~~ 562 (701)
.. ... ........++|+|+|++|++++ .++.|.+|++.+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 256 SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 11 110 0111225689999999886665 45699999998654
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=1.2e-19 Score=189.06 Aligned_cols=270 Identities=11% Similarity=0.081 Sum_probs=194.6
Q ss_pred ccccccccceEEEEEccCccchhhhcccCceec-cCCC-cEEEEEEccCCCEE-EEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ-AHDG-SILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~-~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
.+++++.++.|.+||...... . +.+. ++.. .+..++|+|+|++| +++..++.|.+||+.+++.+..+...
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~-~------~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 75 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAV-D------KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEE-E------EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred EEEEcCCCCeEEEEECCCCcE-E------EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence 466788899999999754321 1 1122 2222 47889999999876 55566889999999887644333211
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS 370 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s 370 (701)
.. ..|...+..++|+|++ +|++
T Consensus 76 ~~---------------------------------------------------------~~~~~~~~~~~~s~dg~~l~~ 98 (337)
T 1pby_B 76 TP---------------------------------------------------------EERVKSLFGAALSPDGKTLAI 98 (337)
T ss_dssp BT---------------------------------------------------------TEEEECTTCEEECTTSSEEEE
T ss_pred Cc---------------------------------------------------------ccccccccceEECCCCCEEEE
Confidence 00 0022346678999999 7777
Q ss_pred EE------------CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc
Q 005352 371 AS------------IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (701)
Q Consensus 371 ~s------------~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 438 (701)
++ .++.|.+||+.+++.+..+.....+.+++|+| ++++|+++ ++.|.+||+.+++..........
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~ 175 (337)
T 1pby_B 99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW 175 (337)
T ss_dssp EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT
T ss_pred EecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeecccc
Confidence 75 57999999999999888887777789999999 88877777 68999999999988765543331
Q ss_pred EEEEEEeeCCCeEEEEecCC------------------------cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 439 VTAVCYRPDGQGGIVGSMMG------------------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg------------------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
...+.|+|+++.+++.+..+ .|.+||+.+++.. .... . .+...+.+++|
T Consensus 176 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~--~----~~~~~~~~~~~ 248 (337)
T 1pby_B 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV--R----IMDVFYFSTAV 248 (337)
T ss_dssp TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE--E----ECSSCEEEEEE
T ss_pred CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec--C----CCCCceeeEEE
Confidence 12347899998776654332 4689999987754 2211 1 12356788999
Q ss_pred ecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 495 LPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+| ++.+++++ ++.|++||+.+........ ....+.+++|+|+|++|++++.++.|++||+.+++
T Consensus 249 s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 249 NP-AKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp CT-TSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CC-CCCEEEEe--CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 99 67777777 7999999998654333222 33567899999999999999999999999998876
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.84 E-value=1e-19 Score=211.62 Aligned_cols=280 Identities=13% Similarity=0.075 Sum_probs=197.3
Q ss_pred eeeecCccccccccc-cc-----eEEEEEccCccchhhhcccCceeccCC----------------------CcEEEEEE
Q 005352 207 ERVRLNEEDAMFCSK-VQ-----RVKVYHCKKRSKELSALYKGQEIQAHD----------------------GSILTMKF 258 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~-d~-----~v~vw~~~~~~~~~~~~~~~~~l~~H~----------------------~~I~~l~f 258 (701)
..++++++.+++++. ++ .|++|+....... .+.. ...+. ..|.+++|
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR--LLVD---SKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE--EEEC---GGGTC--------------------CCEESCCCEE
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee--Eccc---hhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 456677778888877 77 8999997654321 1110 01111 34789999
Q ss_pred ccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCc
Q 005352 259 SPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPK 338 (701)
Q Consensus 259 spdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (701)
||||++|++++. +.|.+||+.++..
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~------------------------------------------------------ 141 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGK------------------------------------------------------ 141 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCST------------------------------------------------------
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCc------------------------------------------------------
Confidence 999999999987 8999999977510
Q ss_pred cccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecC-CCC----------------eEEE
Q 005352 339 VFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPH-SNY----------------VTCV 400 (701)
Q Consensus 339 ~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h-~~~----------------V~~l 400 (701)
.....+..|...+..++|+|+| +|+.++ ++.|++||+.+++....... ... +..+
T Consensus 142 ------~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~ 214 (741)
T 2ecf_A 142 ------AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGY 214 (741)
T ss_dssp ------TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSE
T ss_pred ------ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccce
Confidence 0111234566789999999999 777776 56999999999887765542 221 4789
Q ss_pred EEeeCCCCEEEEEEcCC---------------------------------cEEEEeCCC-CcEEEEe---cCCCcEEEEE
Q 005352 401 HFNPVDDNYFISGSIDG---------------------------------KVRIWAVLS-CHVVDWV---DIRQIVTAVC 443 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg---------------------------------~v~iwd~~~-~~~~~~~---~~~~~i~~i~ 443 (701)
+|+| ++++|++++.|+ .|++||+.+ ++..... .+...+..++
T Consensus 215 ~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 293 (741)
T 2ecf_A 215 WWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVN 293 (741)
T ss_dssp EECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEE
T ss_pred EECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEE
Confidence 9999 999999988765 789999988 7765443 3567899999
Q ss_pred EeeCCCeEEEEec-----CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 444 YRPDGQGGIVGSM-----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 444 ~sp~g~~l~~gs~-----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
| |||+.|++++. +..|++||+.+++........ .......+..++|+| +++++++++.++.++||....
T Consensus 294 ~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~----~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~ 367 (741)
T 2ecf_A 294 W-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET----SPTWVPLHNSLRFLD-DGSILWSSERTGFQHLYRIDS 367 (741)
T ss_dssp E-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE----CSSCCCCCSCCEECT-TSCEEEEECTTSSCEEEEECS
T ss_pred e-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC----CCCcCCcCCceEECC-CCeEEEEecCCCccEEEEEcC
Confidence 9 99999998764 567999999987654322111 111111356789999 567888888899888876541
Q ss_pred cceeeecccCCCCeEEE-EEecCCCEEEE-EeCCC--cEEEEeCCC
Q 005352 519 VIGKYKGLRRSGNQLSA-CFTSDGKHIVS-AGEDS--NVYMWNCIG 560 (701)
Q Consensus 519 ~~~~~~~~~~~~~v~~l-~~s~dg~~l~s-gs~Dg--~I~iWd~~~ 560 (701)
.........+...+..+ .|+|+|++|+. ++.++ .++||++..
T Consensus 368 ~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 368 KGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp SSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 11133333466778777 59999997754 55555 899999864
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.83 E-value=1.1e-18 Score=181.81 Aligned_cols=202 Identities=13% Similarity=0.157 Sum_probs=149.0
Q ss_pred CccCeEEEEEecCC-eEEEEEC-CCcEEEEECCCCee-eeeec-CCCCeEEEEEeeCCCCEEEEEEcCC---cEEEEeCC
Q 005352 353 HSGEILDLSWSKNN-YLLSASI-DKTVRLWRVGNDHC-LRVFP-HSNYVTCVHFNPVDDNYFISGSIDG---KVRIWAVL 425 (701)
Q Consensus 353 h~~~I~~l~~s~~~-~l~s~s~-dg~I~iWd~~~~~~-~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg---~v~iwd~~ 425 (701)
+...+ .++|+|++ ++++++. ++.|.+||+.+++. ...+. +..+..+++|+| ++++++++..++ .|.+||+.
T Consensus 39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~ 116 (331)
T 3u4y_A 39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFL 116 (331)
T ss_dssp CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETT
T ss_pred cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECC
Confidence 34455 89999999 6666665 89999999999987 66665 444444499999 999888555553 89999999
Q ss_pred CCcEEEEecCCCcEEEEEEeeCCCeEEEEe-cCCc-EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE-
Q 005352 426 SCHVVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGD-CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV- 502 (701)
Q Consensus 426 ~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs-~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l- 502 (701)
+++.+........+..++|+|+|+++++++ .++. +.+|++............. .........++|+| +++++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~sp-dg~~l~ 191 (331)
T 3u4y_A 117 KNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEF----ISGGTRPFNITFTP-DGNFAF 191 (331)
T ss_dssp TTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE----ECSSSSEEEEEECT-TSSEEE
T ss_pred CCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcc----ccCCCCccceEECC-CCCEEE
Confidence 999888777777889999999998766654 4588 9999998654332221111 12334578999999 56655
Q ss_pred EEEECCCcEEEEeCCccce---eeecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCC
Q 005352 503 MVSCADSQVRILQGPNVIG---KYKGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~~~~---~~~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~~ 562 (701)
+++..++.|++||+.+... .... .....+..++|+|+|++|+.++ .++.|.+||+.+++
T Consensus 192 v~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 192 VANLIGNSIGILETQNPENITLLNAV-GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGT 254 (331)
T ss_dssp EEETTTTEEEEEECSSTTSCEEEEEE-ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred EEeCCCCeEEEEECCCCcccceeeec-cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence 4555689999999875443 2222 2446778899999999876664 57889999998765
No 141
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=1.5e-17 Score=175.55 Aligned_cols=269 Identities=14% Similarity=0.165 Sum_probs=181.4
Q ss_pred cccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC----CcEEEEEeecC-eeeeeecCCCCC
Q 005352 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD----GVVRLWQVVED-ERLTEVDIPEID 294 (701)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~I~iWd~~~~-~~~~~~~~~~~~ 294 (701)
+.++.|.+|.++.....+.... .+ |...+..++|+|+|++|++++.+ +.|.+|++... ..+
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~---~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~--------- 89 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLS---DA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL--------- 89 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEE---EE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE---------
T ss_pred CCCCCEEEEEEeCCCCCEEEee---cc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE---------
Confidence 3567899998865443333221 12 66778889999999999999886 79999998763 111
Q ss_pred CceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE-
Q 005352 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS- 372 (701)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s- 372 (701)
+.+.....+......+++ ++ +|++++
T Consensus 90 --------------------------------------------------~~~~~~~~~~~~p~~~~~--dg~~l~~~~~ 117 (361)
T 3scy_A 90 --------------------------------------------------HLLNTQKTMGADPCYLTT--NGKNIVTANY 117 (361)
T ss_dssp --------------------------------------------------EEEEEEECSSSCEEEEEE--CSSEEEEEET
T ss_pred --------------------------------------------------EEeeEeccCCCCcEEEEE--CCCEEEEEEC
Confidence 111222334456677777 55 666655
Q ss_pred CCCcEEEEECCCCeeeeee----cC-----------CCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCCCCc-------E
Q 005352 373 IDKTVRLWRVGNDHCLRVF----PH-----------SNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCH-------V 429 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~----~h-----------~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~~~~-------~ 429 (701)
.++.|.+|++.....+..+ .+ ...+.+++|+| ++++++++. .++.|.+|++.... +
T Consensus 118 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l 196 (361)
T 3scy_A 118 SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKF 196 (361)
T ss_dssp TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCC
T ss_pred CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccce
Confidence 6889999999765433221 11 23458899999 898666555 47899999887533 1
Q ss_pred -------EEEecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCE
Q 005352 430 -------VDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (701)
Q Consensus 430 -------~~~~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~ 501 (701)
.........+..++|+|+|+++++++ .++.|.+|++.++.+.....+. ....+......++|+| ++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~---~~~~~~~~~~~i~~sp-dg~~ 272 (361)
T 3scy_A 197 LTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA---ADTVNAQGSGDIHLSP-DGKY 272 (361)
T ss_dssp EEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE---SCSSCCCCEEEEEECT-TSSE
T ss_pred eecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe---cCCCCCCCcccEEECC-CCCE
Confidence 12233456688999999999888777 6899999999877653322221 1222334568999999 6777
Q ss_pred EEEEEC--CCcEEEEeCC--ccce-eeecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 005352 502 VMVSCA--DSQVRILQGP--NVIG-KYKGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCI 559 (701)
Q Consensus 502 l~~~s~--dg~I~iwd~~--~~~~-~~~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~ 559 (701)
|+++.. ++.|.+|++. +... ..........+..++|+|+|++|++++ .++.|.+|+++
T Consensus 273 l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 273 LYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 766665 4899999985 2221 111111245678999999999998887 67899997665
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.82 E-value=1.1e-18 Score=182.08 Aligned_cols=203 Identities=16% Similarity=0.169 Sum_probs=146.9
Q ss_pred CccCeEEEEEecCC-eEEEEECC-CcEEEEECC--CCe--eeeeecCCCCeEEEEEeeCCCCEEEEEEc-CCcEEEEeCC
Q 005352 353 HSGEILDLSWSKNN-YLLSASID-KTVRLWRVG--NDH--CLRVFPHSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVL 425 (701)
Q Consensus 353 h~~~I~~l~~s~~~-~l~s~s~d-g~I~iWd~~--~~~--~~~~~~h~~~V~~l~f~p~~~~~l~sgs~-dg~v~iwd~~ 425 (701)
|...+.+++|+|++ +|++++.+ +.|.+|++. +++ .+..+.....+.+++|+| ++++|++++. ++.|.+||+.
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcC-CCCEEEEEecCCCeEEEEECC
Confidence 55678889999999 78888876 999999997 554 344455455889999999 8887776665 8889999994
Q ss_pred ---CCcEEEEecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCC-CeeeeeeeEEeecccCCCCCCeeEEEEecCCCC
Q 005352 426 ---SCHVVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (701)
Q Consensus 426 ---~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~ 500 (701)
..+..........+.+++|+|+++.+++++ .++.|.+||+.+ ++......... .......+..++|+| ++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p-dg~ 190 (343)
T 1ri6_A 115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV---TTVEGAGPRHMVFHP-NEQ 190 (343)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE---ECSTTCCEEEEEECT-TSS
T ss_pred CCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc---ccCCCCCcceEEECC-CCC
Confidence 444555555666799999999999888887 899999999987 54332110011 112234678899999 566
Q ss_pred EEEEE-ECCCcEEEEeCCc--cc----eeeecc----cCCCCeEEEEEecCCCEEEE-EeCCCcEEEEeCCC
Q 005352 501 KVMVS-CADSQVRILQGPN--VI----GKYKGL----RRSGNQLSACFTSDGKHIVS-AGEDSNVYMWNCIG 560 (701)
Q Consensus 501 ~l~~~-s~dg~I~iwd~~~--~~----~~~~~~----~~~~~v~~l~~s~dg~~l~s-gs~Dg~I~iWd~~~ 560 (701)
+++++ ..++.|.+|++.. .. ...... .....+..++|+|+|++|++ +..++.|++|++..
T Consensus 191 ~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 191 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 55554 4799999999853 11 111111 12346778999999998874 45799999999874
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=1.5e-18 Score=200.65 Aligned_cols=241 Identities=12% Similarity=0.084 Sum_probs=171.7
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCc
Q 005352 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (701)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (701)
..|.+++|+|| .+++.+. |+.|++||+.+++..
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~--------------------------------------------- 114 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVT--------------------------------------------- 114 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEE---------------------------------------------
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceE---------------------------------------------
Confidence 56999999999 6665553 599999999776421
Q ss_pred cEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCC-----CeeeeeecC-CCC-------
Q 005352 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN-----DHCLRVFPH-SNY------- 396 (701)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~-----~~~~~~~~h-~~~------- 396 (701)
.+..+...+.+++|+|+| +|++ ..++.|++||+.+ ++....... ...
T Consensus 115 ------------------~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 115 ------------------YLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp ------------------EEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred ------------------EccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 122345567889999999 7777 4789999999998 776654442 222
Q ss_pred -------eEEEEEeeCCCCEEEEEE---------------------------------cCCcEEEEeCCCCcEEEEe---
Q 005352 397 -------VTCVHFNPVDDNYFISGS---------------------------------IDGKVRIWAVLSCHVVDWV--- 433 (701)
Q Consensus 397 -------V~~l~f~p~~~~~l~sgs---------------------------------~dg~v~iwd~~~~~~~~~~--- 433 (701)
+.+++|+| ++++|++++ .+..|++||+.+++.....
T Consensus 176 ~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 254 (706)
T 2z3z_A 176 HQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE 254 (706)
T ss_dssp GGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS
T ss_pred hhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC
Confidence 58999999 999999987 3467999999998866544
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCC-----cEEEEECCCC-eeeeeeeEEeecccCCCCCCeeEEEEec-CCCCEEEEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMG-----DCRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQFLP-QDSSKVMVSC 506 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg-----~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~p-~~~~~l~~~s 506 (701)
.+...+..++|+|||+.|++++.++ .|.+||+.++ ....... .. .......+..+.|+| .++.+++++.
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~---~~-~~~~~~~~~~~~~sp~~dg~~l~~~~ 330 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV---ET-DKHYVEPLHPLTFLPGSNNQFIWQSR 330 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE---EE-CSSCCCCCSCCEECTTCSSEEEEEEC
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE---cc-CCCeECccCCceeecCCCCEEEEEEc
Confidence 3556799999999999999988776 8999999987 3322111 11 111112346789998 2456888888
Q ss_pred CCCcEEEEeCC-ccceeeecccCCCCeEE-EEEecCCCEEEEEeC-CC----cEEEEeCCCCC
Q 005352 507 ADSQVRILQGP-NVIGKYKGLRRSGNQLS-ACFTSDGKHIVSAGE-DS----NVYMWNCIGHE 562 (701)
Q Consensus 507 ~dg~I~iwd~~-~~~~~~~~~~~~~~v~~-l~~s~dg~~l~sgs~-Dg----~I~iWd~~~~~ 562 (701)
.++.++||... +.........+...+.. ++|+|+|+.|+.++. ++ .|+.|++.+++
T Consensus 331 ~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 331 RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 89999998765 22222233335566776 799999998866554 44 57777766654
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=1.4e-18 Score=200.93 Aligned_cols=288 Identities=13% Similarity=0.113 Sum_probs=193.9
Q ss_pred ceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec----
Q 005352 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE---- 281 (701)
Q Consensus 206 ~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~---- 281 (701)
+..+.++++..++.+.++.|++|+...... ..+..|.+.+.+++|||||++||++ .|+.|++|++.+
T Consensus 84 v~~~~~spd~~~~~~~~~~i~~~d~~~~~~--------~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 84 SFRTLDAGRGLVVLFTQGGLVGFDMLARKV--------TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CEEEEETTTTEEEEEETTEEEEEETTTTEE--------EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred ceeEEECCCCeEEEEECCEEEEEECCCCce--------EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 444444443434444679999999754321 2244567778999999999999995 679999999987
Q ss_pred -CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEE
Q 005352 282 -DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (701)
Q Consensus 282 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 360 (701)
++........... + .. +.+ ....+...+.++
T Consensus 155 ~g~~~~~~~~~~~~---~----------------------~~---------------------g~~--~~~ee~~~~~~~ 186 (706)
T 2z3z_A 155 MSRAIAVTIDGTET---L----------------------VY---------------------GQA--VHQREFGIEKGT 186 (706)
T ss_dssp CCCCEESCSCCBTT---E----------------------EE---------------------SSC--CGGGCTTCCCSE
T ss_pred CCCcEEeccCCCCC---e----------------------Ec---------------------ccc--hhhhhcCCCceE
Confidence 5432211100000 0 00 000 111233457889
Q ss_pred EEecCC-eEEEEE---------------------------------CCCcEEEEECCCCeeeeee---cCCCCeEEEEEe
Q 005352 361 SWSKNN-YLLSAS---------------------------------IDKTVRLWRVGNDHCLRVF---PHSNYVTCVHFN 403 (701)
Q Consensus 361 ~~s~~~-~l~s~s---------------------------------~dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~ 403 (701)
+|+|+| +|++++ .+..|++||+.+++..... .+...+.+++|+
T Consensus 187 ~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 266 (706)
T 2z3z_A 187 FWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWS 266 (706)
T ss_dssp EECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEEC
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEE
Confidence 999999 888887 4467999999998876554 366789999999
Q ss_pred eCCCCEEEEEEcCC-----cEEEEeCCCC-cEEEEe--cCCC---cEEEEEEee--CCCeEEEEecCCcEEEEECC-CCe
Q 005352 404 PVDDNYFISGSIDG-----KVRIWAVLSC-HVVDWV--DIRQ---IVTAVCYRP--DGQGGIVGSMMGDCRFYNVS-DNH 469 (701)
Q Consensus 404 p~~~~~l~sgs~dg-----~v~iwd~~~~-~~~~~~--~~~~---~i~~i~~sp--~g~~l~~gs~dg~v~i~d~~-~~~ 469 (701)
| ++++|++++.++ .|++||+.++ ...... .... .+..++|+| +|++++++..+|.+++|.+. ++.
T Consensus 267 p-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~ 345 (706)
T 2z3z_A 267 P-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR 345 (706)
T ss_dssp T-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC
T ss_pred C-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC
Confidence 9 999999888776 8999999998 443333 2222 246789999 99999999999999999876 332
Q ss_pred eeeeeeEEeecccCCCCCCeeE-EEEecCCCCEEEEEE-CCC----cEEEEeCCccceeeecccCCCCeEEEEEecCCCE
Q 005352 470 LELDAEICVHSKKKAPCKRITG-FQFLPQDSSKVMVSC-ADS----QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKH 543 (701)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~i~~-l~~~p~~~~~l~~~s-~dg----~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 543 (701)
.... ...+...+.. +.|+| +++.|+.++ .++ .|+.||..+... ....+...+.+++|+|||++
T Consensus 346 ~~~~--------l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~spdg~~ 414 (706)
T 2z3z_A 346 LIRQ--------VTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGKT--KDLTPESGMHRTQLSPDGSA 414 (706)
T ss_dssp EEEE--------CCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCCC--EESCCSSSEEEEEECTTSSE
T ss_pred EEEe--------cCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCCc--eeccCCCceEEEEECCCCCE
Confidence 2110 1223345666 79999 566555544 444 667777655332 22235677899999999999
Q ss_pred EEEEeCC----CcEEEEeCCCCC
Q 005352 544 IVSAGED----SNVYMWNCIGHE 562 (701)
Q Consensus 544 l~sgs~D----g~I~iWd~~~~~ 562 (701)
|+.+..+ +.|++||+.+++
T Consensus 415 l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 415 IIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEecCCCCCcEEEEEECCCCe
Confidence 8876443 569999998765
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.82 E-value=2.5e-18 Score=174.92 Aligned_cols=199 Identities=14% Similarity=0.080 Sum_probs=147.9
Q ss_pred cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCC-Ceeeeeec-C-CCCeEEEEEeeCCCCEEEEEEc--CCc--EEEE
Q 005352 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN-DHCLRVFP-H-SNYVTCVHFNPVDDNYFISGSI--DGK--VRIW 422 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~-~~~~~~~~-h-~~~V~~l~f~p~~~~~l~sgs~--dg~--v~iw 422 (701)
..|...|.+++|+|++ +|++++ ++.|++||+.+ ++...... + ...+.+++|+| ++++|++++. ++. |.+|
T Consensus 38 ~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~ 115 (297)
T 2ojh_A 38 WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLL 115 (297)
T ss_dssp EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEE
T ss_pred ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEE
Confidence 4477889999999999 777766 88999999999 87776664 3 47789999999 9999999983 344 4555
Q ss_pred eCCCCcEEEEecCCCcEEEEEEeeCCCeEE-EEecCCcEEEEECCC--CeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGI-VGSMMGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 423 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~-~gs~dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
++.+++...+ .....+..++|+|+++.|+ ++..++.+++|++.. .... ....+...+.++.|+| ++
T Consensus 116 ~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~s~-dg 184 (297)
T 2ojh_A 116 PSTGGTPRLM-TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET---------RLTHGEGRNDGPDYSP-DG 184 (297)
T ss_dssp ETTCCCCEEC-CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE---------ECCCSSSCEEEEEECT-TS
T ss_pred ECCCCceEEe-ecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce---------EcccCCCccccceECC-CC
Confidence 5556554433 3344589999999999887 677899999998643 3221 1223446789999999 66
Q ss_pred CEEEEEE-CCCcEEEEeCC-ccceeeecccCCCCeEEEEEecCCCEEEEEeCC-----------CcEEEEeCCCCC
Q 005352 500 SKVMVSC-ADSQVRILQGP-NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGED-----------SNVYMWNCIGHE 562 (701)
Q Consensus 500 ~~l~~~s-~dg~I~iwd~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D-----------g~I~iWd~~~~~ 562 (701)
..+++++ .++.+++|++. ..........+...+..++|+|+|++|++++.+ +.|++||+.+++
T Consensus 185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 185 RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 7666655 58999999875 222333333466778899999999999988766 569999998765
No 146
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=2.8e-18 Score=185.83 Aligned_cols=208 Identities=13% Similarity=0.080 Sum_probs=146.2
Q ss_pred eeeecCccccccccccceEEEEEccCccch------hhhc--ccCceeccCCCcEEEEEEccCCCEEE----EEeCCCcE
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKE------LSAL--YKGQEIQAHDGSILTMKFSPDGQYLA----SAGDDGVV 274 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~------~~~~--~~~~~l~~H~~~I~~l~fspdg~~La----sgs~Dg~I 274 (701)
.+++.....+++++.++ ++||+....... .... ........|.+.|.+++|+|+|++|| +|+.|+.|
T Consensus 42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v 120 (434)
T 2oit_A 42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII 120 (434)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEE
T ss_pred EEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceE
Confidence 44555566677776666 899876421110 0000 11111234677899999999999999 88999999
Q ss_pred EEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc
Q 005352 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (701)
Q Consensus 275 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 354 (701)
+|||+.+..... ...... -..+..+.+|.
T Consensus 121 ~iwd~~~~~~~~-----~~~~~~----------------------------------------------~~~~~~~~~h~ 149 (434)
T 2oit_A 121 AFFDVRTFSNEA-----KQQKRP----------------------------------------------FAYHKLLKDAG 149 (434)
T ss_dssp EEEEHHHHHCTT-----CSSCCC----------------------------------------------SEEEECCCSGG
T ss_pred EEEEccccccCC-----cCCcce----------------------------------------------eeeeeccCCCC
Confidence 999997641000 000000 01123456799
Q ss_pred cCeEEEEEecC-C-eEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 355 GEILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 355 ~~I~~l~~s~~-~-~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
..|.+++|+|+ + +|++++.||+|++||++++..+... .|...|++++|+| ++++|++|+.||.|++||++ ++...
T Consensus 150 ~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~ 227 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKK 227 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEE
T ss_pred CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-Ccccc
Confidence 99999999998 5 8999999999999999998765443 4788999999999 89999999999999999998 43332
Q ss_pred -EecC-------CCcEEEEEEeeCCCeEEEEe-cCC------cEEEEECCCC
Q 005352 432 -WVDI-------RQIVTAVCYRPDGQGGIVGS-MMG------DCRFYNVSDN 468 (701)
Q Consensus 432 -~~~~-------~~~i~~i~~sp~g~~l~~gs-~dg------~v~i~d~~~~ 468 (701)
...+ ...+.+++|++++.++++.+ .+| .+++|+++..
T Consensus 228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 2222 23799999999887775533 333 3899999865
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.80 E-value=2e-17 Score=173.57 Aligned_cols=243 Identities=9% Similarity=0.051 Sum_probs=181.6
Q ss_pred CCCcEEEEEEccCCCEEEEEeC-------CCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 249 HDGSILTMKFSPDGQYLASAGD-------DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~-------Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
....+..++|+|+|++|++++. ++.|.+||..+++.+..+.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 86 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-------------------------------- 86 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------------------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------------------
Confidence 3456889999999999888874 5689999988775433221
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE-EEECCCcEEEEECCCCeeeeeecCCC----
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFPHSN---- 395 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s~dg~I~iWd~~~~~~~~~~~h~~---- 395 (701)
....+..++|+|++ +++ +...++.|.+||+.+++.+..+....
T Consensus 87 -------------------------------~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 135 (353)
T 3vgz_A 87 -------------------------------NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT 135 (353)
T ss_dssp -------------------------------ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC
T ss_pred -------------------------------cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc
Confidence 12235678999998 454 55557999999999999888776321
Q ss_pred ------CeEEEEEeeCCCCEEEEEE--cCCcEEEEeCCCCcEEEEec-CCCcEEEEEEeeCCCeEEEEecCCcEEEEECC
Q 005352 396 ------YVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (701)
Q Consensus 396 ------~V~~l~f~p~~~~~l~sgs--~dg~v~iwd~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~ 466 (701)
.+.+++|+| ++++++++. .++.|.+||+.+++.+.... +...+..++|+|+++.+++++.++.|.+||+.
T Consensus 136 ~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~ 214 (353)
T 3vgz_A 136 EEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTA 214 (353)
T ss_dssp SSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT
T ss_pred cccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECC
Confidence 278999999 888777766 47889999999999887766 55668899999999999999999999999999
Q ss_pred CCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEE
Q 005352 467 DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIV 545 (701)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 545 (701)
+++....... ....+...+.+++|+| ++..+++++ .++.|.+||..+........... ...++|+|+|++++
T Consensus 215 ~~~~~~~~~~----~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~ 287 (353)
T 3vgz_A 215 DNKILSRKKL----LDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAY 287 (353)
T ss_dssp TTEEEEEEEC----CCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEE
T ss_pred CCeEEEEEEc----CCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEE
Confidence 8876533221 1222345678899999 566555555 46999999997654433322122 25699999999766
Q ss_pred EEe-CCCcEEEEeCCCCC
Q 005352 546 SAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 546 sgs-~Dg~I~iWd~~~~~ 562 (701)
.++ .++.|.+||..+++
T Consensus 288 v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 288 VTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp EEETTTTEEEEEETTTTE
T ss_pred EEECCCCeEEEEECCCCe
Confidence 555 78999999988765
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.80 E-value=5.2e-19 Score=205.06 Aligned_cols=238 Identities=13% Similarity=0.129 Sum_probs=167.5
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
.+.+++|+|||+++++ +.||.|++||+.+++..
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~---------------------------------------------- 50 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST---------------------------------------------- 50 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE----------------------------------------------
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE----------------------------------------------
Confidence 4678999999998877 78999999999887532
Q ss_pred EEEcCCccccccCCCeEEEcCCcc---CeEEEEEecCC-eEEEEECC---------CcEEEEECCCCeeeeeec---CCC
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSG---EILDLSWSKNN-YLLSASID---------KTVRLWRVGNDHCLRVFP---HSN 395 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~---~I~~l~~s~~~-~l~s~s~d---------g~I~iWd~~~~~~~~~~~---h~~ 395 (701)
..+.+|.. .|.+++|+|+| +|++++.+ +.|.+||+.+++...... +..
T Consensus 51 ----------------~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 114 (723)
T 1xfd_A 51 ----------------VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA 114 (723)
T ss_dssp ----------------EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred ----------------EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccc
Confidence 22233433 48999999999 88888775 778899999987632222 344
Q ss_pred CeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-CCc------------------EEEEEEeeCCCeEEEEec
Q 005352 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQI------------------VTAVCYRPDGQGGIVGSM 456 (701)
Q Consensus 396 ~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~------------------i~~i~~sp~g~~l~~gs~ 456 (701)
.+..++|+| +++.|+.++. +.|++||+.+++....... ... +.+++|+|||+.|++++.
T Consensus 115 ~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~ 192 (723)
T 1xfd_A 115 KLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI 192 (723)
T ss_dssp CCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred cccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEE
Confidence 588999999 9999999885 7999999998877655433 222 378999999999999876
Q ss_pred CC----------------------------------cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 457 MG----------------------------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 457 dg----------------------------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
++ .|++||+.+++.... +........+...+..+.|+| +++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~--l~~~~~~~~~~~~~~~~~~Sp-Dg~~l 269 (723)
T 1xfd_A 193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE--MMPPDDPRMREYYITMVKWAT-STKVA 269 (723)
T ss_dssp ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE--CCCCCCGGGSSEEEEEEEESS-SSEEE
T ss_pred CCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEE--eeCCccCCCccceeEEEEEeC-CCeEE
Confidence 53 688888887653211 111100111245688999999 67777
Q ss_pred EEEEC----CCcEEEEeCCccceeeec-ccCCCCe----EEEEEecCCCEEEE--EeCCC------cEEEEe
Q 005352 503 MVSCA----DSQVRILQGPNVIGKYKG-LRRSGNQ----LSACFTSDGKHIVS--AGEDS------NVYMWN 557 (701)
Q Consensus 503 ~~~s~----dg~I~iwd~~~~~~~~~~-~~~~~~v----~~l~~s~dg~~l~s--gs~Dg------~I~iWd 557 (701)
++.+. +..|++||+.+....... ..+...+ ..++|+|||++|+. +..++ .|++|+
T Consensus 270 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 270 VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred EEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 66653 357999998765433221 1122333 37899999997765 45677 567777
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.80 E-value=6e-18 Score=196.07 Aligned_cols=276 Identities=9% Similarity=0.097 Sum_probs=187.2
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCC---cEEEEEEccCCCEEEEEeCC---------CcEE
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDG---SILTMKFSPDGQYLASAGDD---------GVVR 275 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~D---------g~I~ 275 (701)
.++++++.+ +.+.++.|++|+...... .+.+.+|.. .|.+++|||||++||+++.+ +.|.
T Consensus 23 ~~spdg~~~-~~~~dg~i~~~d~~~g~~-------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 23 KWISDTEFI-YREQKGTVRLWNVETNTS-------TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CBSSSSCBC-CCCSSSCEEEBCGGGCCC-------EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred EEcCCCcEE-EEeCCCCEEEEECCCCcE-------EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 455555644 447889999998754322 123444554 49999999999999999875 7788
Q ss_pred EEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCcc
Q 005352 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (701)
Q Consensus 276 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 355 (701)
+||+.+++. ..+ ....+|..
T Consensus 95 ~~d~~~~~~-~~l-----------------------------------------------------------~~~~~~~~ 114 (723)
T 1xfd_A 95 LSKIPHGDP-QSL-----------------------------------------------------------DPPEVSNA 114 (723)
T ss_dssp EEESSSCCC-EEC-----------------------------------------------------------CCTTCCSC
T ss_pred EEECCCCce-Eec-----------------------------------------------------------cCCccccc
Confidence 999987652 111 01124555
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCC------------------eEEEEEeeCCCCEEEEEEc
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNY------------------VTCVHFNPVDDNYFISGSI 415 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~------------------V~~l~f~p~~~~~l~sgs~ 415 (701)
.+..++|+|+| .|+.++. +.|++||+.+++...... +... +.+++|+| ++++|++++.
T Consensus 115 ~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~ 192 (723)
T 1xfd_A 115 KLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAI 192 (723)
T ss_dssp CCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEE
T ss_pred cccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEE
Confidence 68889999999 8888776 799999999988776654 2322 37899999 9999998876
Q ss_pred CC----------------------------------cEEEEeCCCCcEE-EEecC------CCcEEEEEEeeCCCeEEEE
Q 005352 416 DG----------------------------------KVRIWAVLSCHVV-DWVDI------RQIVTAVCYRPDGQGGIVG 454 (701)
Q Consensus 416 dg----------------------------------~v~iwd~~~~~~~-~~~~~------~~~i~~i~~sp~g~~l~~g 454 (701)
++ .|++||+.+++.. .+..+ ...+..++|+|||+.+++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~ 272 (723)
T 1xfd_A 193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTW 272 (723)
T ss_dssp ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEE
T ss_pred CCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEE
Confidence 53 7999999988753 33322 4678999999999988776
Q ss_pred ecC----CcEEEEECCCCeeeeeeeEEeecccCCCCCCe----eEEEEecCCCCEEE-E-EECCC------cEEEEe-CC
Q 005352 455 SMM----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRI----TGFQFLPQDSSKVM-V-SCADS------QVRILQ-GP 517 (701)
Q Consensus 455 s~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i----~~l~~~p~~~~~l~-~-~s~dg------~I~iwd-~~ 517 (701)
... ..|++||+.+++....... . +...+ ..++|+| +++.|+ + +..++ .|++|| ..
T Consensus 273 ~~~~~~~~~i~~~d~~~g~~~~~~~~--~-----~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~ 344 (723)
T 1xfd_A 273 LNRAQNVSILTLCDATTGVCTKKHED--E-----SEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQP 344 (723)
T ss_dssp EETTSCEEEEEEEETTTCCEEEEEEE--E-----CSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSC
T ss_pred EcCCCCeEEEEEEeCCCCcceEEEEe--c-----cCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccC
Confidence 543 5799999988765432111 0 11112 3679999 455444 3 45566 577777 33
Q ss_pred ccce--eeecccCCCCeEE-EEEecCCCEEEEEeCC---CcEEEEeCCCC
Q 005352 518 NVIG--KYKGLRRSGNQLS-ACFTSDGKHIVSAGED---SNVYMWNCIGH 561 (701)
Q Consensus 518 ~~~~--~~~~~~~~~~v~~-l~~s~dg~~l~sgs~D---g~I~iWd~~~~ 561 (701)
.... ......+...+.. ++|+|||++|+..+.+ +.++||+++..
T Consensus 345 ~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 345 NSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp CSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred CCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 3220 1122223344554 6999999999766555 78999998754
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.80 E-value=3.8e-17 Score=171.35 Aligned_cols=270 Identities=9% Similarity=0.055 Sum_probs=189.8
Q ss_pred eeecCccccccccc-------cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEE-EEeCCCcEEEEEe
Q 005352 208 RVRLNEEDAMFCSK-------VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLA-SAGDDGVVRLWQV 279 (701)
Q Consensus 208 ~~~~~~~~~~~~~~-------d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~I~iWd~ 279 (701)
.++++++.+++++. ++.|.+|+...... . +.+. +...+..++|+|+|++|+ +...++.|.+||.
T Consensus 47 ~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~--~-----~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 47 AYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV--T-----QAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE--E-----EEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE--E-----EEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 34555556655442 67899998654321 1 1122 233467899999999655 4555799999999
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
.+++.+..+...... .+ -......+.+
T Consensus 119 ~~~~~~~~~~~~~~~--------------------------------------------------~~---~~~~~~~~~~ 145 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRK--------------------------------------------------RT---EEVRPLQPRE 145 (353)
T ss_dssp TTCCEEEEEESCCCC--------------------------------------------------CC---SSCCCCEEEE
T ss_pred CCCeeEEEEecCCCc--------------------------------------------------cc---cccCCCCCce
Confidence 887755444321100 00 0001123678
Q ss_pred EEEecCC-eEEEEE--CCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec-
Q 005352 360 LSWSKNN-YLLSAS--IDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD- 434 (701)
Q Consensus 360 l~~s~~~-~l~s~s--~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~- 434 (701)
++|+|++ ++++++ .++.|.+||+.+++.+..+. +...+.+++|+| ++++++++..++.|.+||+.+++......
T Consensus 146 ~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~ 224 (353)
T 3vgz_A 146 LVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKL 224 (353)
T ss_dssp EEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEc
Confidence 9999998 666555 47899999999999999888 666789999999 99999999999999999999998875543
Q ss_pred ----CCCcEEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE-ECC
Q 005352 435 ----IRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CAD 508 (701)
Q Consensus 435 ----~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~-s~d 508 (701)
+...+..++|+|+++.+++++. ++.|.+||+.+++....... .....++|+| +++.++++ ..+
T Consensus 225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----------~~~~~~~~s~-dg~~l~v~~~~~ 293 (353)
T 3vgz_A 225 LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA----------PESLAVLFNP-ARNEAYVTHRQA 293 (353)
T ss_dssp CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC----------SSCCCEEEET-TTTEEEEEETTT
T ss_pred CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc----------CCCceEEECC-CCCEEEEEECCC
Confidence 3456888999999998877765 48999999988775432221 1124689999 56655544 469
Q ss_pred CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCC
Q 005352 509 SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDS 551 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg 551 (701)
+.|.+||..+........ ....+.+++|+|+|++|+.+..++
T Consensus 294 ~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 294 GKVSVIDAKSYKVVKTFD-TPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TEEEEEETTTTEEEEEEE-CCSEEEEEEECTTSCEEEEEEECC
T ss_pred CeEEEEECCCCeEEEEEe-cCCCCCeEEEcCCCCEEEEEEccc
Confidence 999999987654433322 345789999999999887776553
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.79 E-value=1.6e-18 Score=180.48 Aligned_cols=241 Identities=10% Similarity=-0.015 Sum_probs=171.9
Q ss_pred CeEEEEEecCC-eE-EEEECCCcEEEEECCCCeeeeeecCCC------CeEEEEEeeCCCCEEEEEE------------c
Q 005352 356 EILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSN------YVTCVHFNPVDDNYFISGS------------I 415 (701)
Q Consensus 356 ~I~~l~~s~~~-~l-~s~s~dg~I~iWd~~~~~~~~~~~h~~------~V~~l~f~p~~~~~l~sgs------------~ 415 (701)
.+..++|+|++ ++ ++++.++.|.+||+.+++.+..+.... .+.+++|+| ++++|+++. .
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEEC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEeccccccccccccc
Confidence 36788999998 55 556668899999999999887776433 678899999 898888886 5
Q ss_pred CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 416 DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 416 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
++.|.+||+.+++.+........+..++|+|++++|+++ ++.|.+||+.+++...... . ...... +.|+
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~----~--~~~~~~---~~~s 182 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP----I--QSWEAE---TYAQ 182 (337)
T ss_dssp CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC----S--TTTTTT---TBCC
T ss_pred CceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee----c--cccCCC---ceeC
Confidence 799999999999888777667778899999999998888 6899999999887542211 1 110111 2567
Q ss_pred cCCCCEEEEEEC-CC-----------------------cEEEEeCCcccee-eecccCCCCeEEEEEecCCCEEEEEeCC
Q 005352 496 PQDSSKVMVSCA-DS-----------------------QVRILQGPNVIGK-YKGLRRSGNQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 496 p~~~~~l~~~s~-dg-----------------------~I~iwd~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~sgs~D 550 (701)
| ++..+++.+. ++ .|.+||..+.... .....+...+.+++|+|+|++|+++ +
T Consensus 183 ~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~ 259 (337)
T 1pby_B 183 P-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y 259 (337)
T ss_dssp C-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--E
T ss_pred C-CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--C
Confidence 7 3444433332 22 4689998765432 2223355678899999999999988 7
Q ss_pred CcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccC
Q 005352 551 SNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFES 630 (701)
Q Consensus 551 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s 630 (701)
+.|++||+.+++.. ..+ . ....+..++|+|+ +..+++++
T Consensus 260 ~~v~~~d~~~~~~~--------~~~-----------~------------------~~~~~~~~~~s~d----g~~l~~~~ 298 (337)
T 1pby_B 260 NVLESFDLEKNASI--------KRV-----------P------------------LPHSYYSVNVSTD----GSTVWLGG 298 (337)
T ss_dssp SEEEEEETTTTEEE--------EEE-----------E------------------CSSCCCEEEECTT----SCEEEEES
T ss_pred CeEEEEECCCCcCc--------cee-----------c------------------CCCceeeEEECCC----CCEEEEEc
Confidence 99999998876521 000 0 0113445678887 55666667
Q ss_pred CCCcccCCCCccCCCCcccccc
Q 005352 631 FPKGCATWPEEKLPALSQLSSA 652 (701)
Q Consensus 631 ~d~~~~~W~~~~~~~~~~~~~~ 652 (701)
.++.+.+|+.+....+..+..+
T Consensus 299 ~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 299 ALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp BSSEEEEEETTTCCEEEEEECG
T ss_pred CCCcEEEEECcCCcEEEEEEcC
Confidence 8899999999888776665443
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=3.7e-18 Score=184.96 Aligned_cols=258 Identities=16% Similarity=0.135 Sum_probs=171.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
...+..|++++++.+|++++.|+ |+||+....... .......
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~~~---------------------------------- 77 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKPGDDP---------------------------------- 77 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCTTCCT----------------------------------
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---cccccCc----------------------------------
Confidence 34578899999999999999988 999987542110 0000000
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE----EEECCCcEEEEECCCC--------ee---eeeec-
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL----SASIDKTVRLWRVGND--------HC---LRVFP- 392 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~----s~s~dg~I~iWd~~~~--------~~---~~~~~- 392 (701)
..... ..+... ..|...|.+++|+|++ +|+ +++.|++|+|||+.+. +. +..+.
T Consensus 78 ~~~~~---------~~~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 147 (434)
T 2oit_A 78 NKIVD---------KVQGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD 147 (434)
T ss_dssp TCEEE---------CCCCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS
T ss_pred ccccc---------cCcccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCC
Confidence 00000 011111 2467789999999999 777 7888999999998654 22 23333
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
|...|++++|+|.++++|++++.||+|++||++++..+ ....|...|++++|+|+|++|++|+.||.|++||++ +...
T Consensus 148 h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~ 226 (434)
T 2oit_A 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK 226 (434)
T ss_dssp GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE
T ss_pred CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc
Confidence 78999999999944899999999999999999988655 455678899999999999999999999999999998 3322
Q ss_pred eeeeEEeecc-cCCCCCCeeEEEEecCCCCEEEE-EECCCc------EEEEeCCccc----eeeec---c-----cCCCC
Q 005352 472 LDAEICVHSK-KKAPCKRITGFQFLPQDSSKVMV-SCADSQ------VRILQGPNVI----GKYKG---L-----RRSGN 531 (701)
Q Consensus 472 ~~~~~~~~~~-~~~~~~~i~~l~~~p~~~~~l~~-~s~dg~------I~iwd~~~~~----~~~~~---~-----~~~~~ 531 (701)
.. +..+.. ...+...+.++.|++ +..++++ ...+|. +++|++.+.. ..+.. . ....+
T Consensus 227 ~~--~~~~~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~ 303 (434)
T 2oit_A 227 KV--IPCPPFYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQH 303 (434)
T ss_dssp EE--ECCCTTCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCC
T ss_pred cc--ccCCcccCCCCceeEEEEEEec-CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCc
Confidence 11 111111 112334799999999 4555544 334433 8999987532 11111 1 12233
Q ss_pred eEEEEEecCCCEEEEEeC-CCcEEEEeCC
Q 005352 532 QLSACFTSDGKHIVSAGE-DSNVYMWNCI 559 (701)
Q Consensus 532 v~~l~~s~dg~~l~sgs~-Dg~I~iWd~~ 559 (701)
...+.+-++.+++++++. .+.|.|....
T Consensus 304 ~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 304 HYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred ceeeehhccCCEEEEecCCCCceeEEEec
Confidence 334444577777776654 4557777644
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.78 E-value=8e-18 Score=189.99 Aligned_cols=263 Identities=10% Similarity=0.061 Sum_probs=191.4
Q ss_pred eeeecCccccccccc-cceEEEEEccCccchhhhcccCceeccCC-CcEEEEEEccCCCEEEEEeC---CCcEEEEEeec
Q 005352 207 ERVRLNEEDAMFCSK-VQRVKVYHCKKRSKELSALYKGQEIQAHD-GSILTMKFSPDGQYLASAGD---DGVVRLWQVVE 281 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~-d~~v~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~ 281 (701)
..++++++.+++++. +++++||++... .. +.+..|. ..|..+.|+|| +++++++. +...+||.+..
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~~~g--~~------~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLYDGG--ET------VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETT--EE------EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred eecCCCCCeEEEEEccCCceeEEEEcCC--Cc------EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 456678888888776 999999996322 11 2233455 68999999999 78887775 56678887754
Q ss_pred --CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 282 --DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 282 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
..... .+..+ ..+..
T Consensus 98 ~~~g~~~--------------------------------------------------------------~l~~~-~~~~~ 114 (582)
T 3o4h_A 98 SRPGEEQ--------------------------------------------------------------RLEAV-KPMRI 114 (582)
T ss_dssp TSTTCCE--------------------------------------------------------------ECTTS-CSBEE
T ss_pred cCCCccc--------------------------------------------------------------cccCC-CCcee
Confidence 21000 11111 12335
Q ss_pred EEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC----CcEEEEeCCCCcEEEEe
Q 005352 360 LSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID----GKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 360 l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d----g~v~iwd~~~~~~~~~~ 433 (701)
.+|+|++ .+++++.++.+.+||+.+++......+.. .+++|+| ++++|++++.+ +.|++||+.+++...+.
T Consensus 115 ~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~ 191 (582)
T 3o4h_A 115 LSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD 191 (582)
T ss_dssp EEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEEEC
T ss_pred eeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceEee
Confidence 5778777 45555555556699999998777666544 8899999 99999988877 78999999999888888
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEE--------EecCCCCEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ--------FLPQDSSKVM 503 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~--------~~p~~~~~l~ 503 (701)
.+...+..++|+|||+.|+++..++ .|++||+.+++.. . ...+...+..+. |+|+ +.+++
T Consensus 192 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~spd-g~~~~ 261 (582)
T 3o4h_A 192 SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D--------LELPSKDFSSYRPTAITWLGYLPD-GRLAV 261 (582)
T ss_dssp CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E--------CCCSCSHHHHHCCSEEEEEEECTT-SCEEE
T ss_pred cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E--------ccCCCcChhhhhhccccceeEcCC-CcEEE
Confidence 8888899999999999999888888 8999999887654 1 112233344445 9994 58999
Q ss_pred EEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeCCC
Q 005352 504 VSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDS---NVYMWNCIG 560 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg---~I~iWd~~~ 560 (701)
+++.++.+++|++ .. ... .....+.+++|+ +++++++++.+. .|++|+..+
T Consensus 262 ~~~~~g~~~l~~~--g~-~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 262 VARREGRSAVFID--GE-RVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEETTEEEEEET--TE-EEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEcCCcEEEEEE--CC-eec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999999999999 22 121 244678899999 999999988774 477777654
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.77 E-value=1.6e-17 Score=173.82 Aligned_cols=240 Identities=9% Similarity=-0.013 Sum_probs=171.7
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEE
Q 005352 255 TMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVV 334 (701)
Q Consensus 255 ~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (701)
.+++++++.++++++.++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------------------------------------------- 39 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-------------------------------------------- 39 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--------------------------------------------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--------------------------------------------
Confidence 456788899999999999999999988764433221
Q ss_pred cCCccccccCCCeEEEcCCccCeEEEEEecCC-eE-EEEECCCcEEEEECCCCeeeeeecCCC-------CeEEEEEeeC
Q 005352 335 FPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSN-------YVTCVHFNPV 405 (701)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l-~s~s~dg~I~iWd~~~~~~~~~~~h~~-------~V~~l~f~p~ 405 (701)
+....+..++|+|++ ++ +++..++.|.+||+.+++.+..+.... .+.+++|+|
T Consensus 40 -----------------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp- 101 (349)
T 1jmx_B 40 -----------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP- 101 (349)
T ss_dssp -----------------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-
T ss_pred -----------------CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-
Confidence 111245688999998 45 455578999999999999887776322 378999999
Q ss_pred CCCEEEEEEcC------------CcEEEEeCCCCc---EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCee
Q 005352 406 DDNYFISGSID------------GKVRIWAVLSCH---VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (701)
Q Consensus 406 ~~~~l~sgs~d------------g~v~iwd~~~~~---~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~ 470 (701)
++++|++++.+ +.|.+||+.+++ .+....+...+.+++|+|+|+ +++++ +.|.+||+.+++.
T Consensus 102 dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 102 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKY 178 (349)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCE
T ss_pred CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCce
Confidence 99999988865 899999998844 334445556788999999999 66654 4499999988765
Q ss_pred eeeeeEEeecc---------------------------c---------------------------------CCCCCCee
Q 005352 471 ELDAEICVHSK---------------------------K---------------------------------KAPCKRIT 490 (701)
Q Consensus 471 ~~~~~~~~~~~---------------------------~---------------------------------~~~~~~i~ 490 (701)
........... . ......+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
T 1jmx_B 179 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 258 (349)
T ss_dssp EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcce
Confidence 43221100000 0 00112345
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 491 GFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.++++|.++.+++++ ++.|.+||+.+........ ....+.+++|+|+|++|++++.++.|++||+.+++
T Consensus 259 ~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 259 TGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp EEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred eeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 667778346677766 8899999998654432222 33457789999999999988889999999998765
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.77 E-value=1.7e-17 Score=187.38 Aligned_cols=232 Identities=11% Similarity=0.060 Sum_probs=170.5
Q ss_pred CCCcEEEEEEccCCCEEEEEeC-CCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 249 HDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
+..+|++++|+|||++||+++. ||+++||++.+++.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------------------------------------------- 56 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------------------------------------------- 56 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-------------------------------------------
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-------------------------------------------
Confidence 3567999999999999999887 99999999865532
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCc-cCeEEEEEecCCeEEEEEC---CCcEEEEECCC---CeeeeeecCCCCeEEE
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHS-GEILDLSWSKNNYLLSASI---DKTVRLWRVGN---DHCLRVFPHSNYVTCV 400 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~l~~s~~~~l~s~s~---dg~I~iWd~~~---~~~~~~~~h~~~V~~l 400 (701)
..+..|. ..+..++|+|+..+++++. +...++|.+.. +... .+.....+...
T Consensus 57 --------------------~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~ 115 (582)
T 3o4h_A 57 --------------------VKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRIL 115 (582)
T ss_dssp --------------------EECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEE
T ss_pred --------------------EeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceee
Confidence 1122343 5788999999855555654 45566665433 2222 34333345577
Q ss_pred EEeeCCCC-EEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecC----CcEEEEECCCCeeeeeee
Q 005352 401 HFNPVDDN-YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM----GDCRFYNVSDNHLELDAE 475 (701)
Q Consensus 401 ~f~p~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d----g~v~i~d~~~~~~~~~~~ 475 (701)
+|+| +++ .+++...++.+.+||+.+++...+..+.. .+++|+|||+.|+.++.+ +.|++||+.+++...
T Consensus 116 ~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~--- 189 (582)
T 3o4h_A 116 SGVD-TGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV--- 189 (582)
T ss_dssp EEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE---
T ss_pred eeCC-CCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE---
Confidence 8888 664 34444455566699999998776665554 889999999999988776 779999998876431
Q ss_pred EEeecccCCCCCCeeEEEEecCCCCEEEEEECCC--cEEEEeCCccceeeecccCCCCeEEEE--------EecCCCEEE
Q 005352 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS--QVRILQGPNVIGKYKGLRRSGNQLSAC--------FTSDGKHIV 545 (701)
Q Consensus 476 ~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~--------~s~dg~~l~ 545 (701)
...+...+..++|+| +++.|+++..++ .|++||..+.... ....+...+..++ |+|||.+++
T Consensus 190 ------l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 261 (582)
T 3o4h_A 190 ------FDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAV 261 (582)
T ss_dssp ------ECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEE
T ss_pred ------eecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEE
Confidence 123345679999999 788888888888 8999998865554 3334555566666 999999999
Q ss_pred EEeCCCcEEEEeC
Q 005352 546 SAGEDSNVYMWNC 558 (701)
Q Consensus 546 sgs~Dg~I~iWd~ 558 (701)
+++.|+.+++|++
T Consensus 262 ~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 262 VARREGRSAVFID 274 (582)
T ss_dssp EEEETTEEEEEET
T ss_pred EEEcCCcEEEEEE
Confidence 9999999999999
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=1.7e-16 Score=167.97 Aligned_cols=272 Identities=11% Similarity=0.019 Sum_probs=176.6
Q ss_pred ceEEEEEccCccchhhhcccCcee-ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEee-cCeeeeeecCCCCCCceeEE
Q 005352 223 QRVKVYHCKKRSKELSALYKGQEI-QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV-EDERLTEVDIPEIDPSCIYF 300 (701)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~-~~~~~~~~~~~~~~~~~~~~ 300 (701)
+.|.+|.++.....+..+. .. .++...+..++|+|+|++|++++.+ .|.+|++. +++.....
T Consensus 14 ~~i~~~~~d~~~g~l~~~~---~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~------------ 77 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIK---RTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA------------ 77 (365)
T ss_dssp CEEEEEEEETTTTEEEEEE---EEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE------------
T ss_pred CcEEEEEEECCCCCEEEee---EEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee------------
Confidence 4688877654333222111 11 1234467889999999999999988 99999997 55422110
Q ss_pred eeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-e-E-EEEE-----
Q 005352 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-Y-L-LSAS----- 372 (701)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~-l-~s~s----- 372 (701)
....+ +.+.+++|+|++ + + ++++
T Consensus 78 ------------------------------------------------~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~ 108 (365)
T 1jof_A 78 ------------------------------------------------SHPIG-GHPRANDADTNTRAIFLLAAKQPPYA 108 (365)
T ss_dssp ------------------------------------------------EEECC-SSGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred ------------------------------------------------EeecC-CCCccEEECCCCCEEEEEEecCCcce
Confidence 00001 113347888988 3 3 3442
Q ss_pred --------CCCcEEEEECC-CCeeeeeec-----CCCCeEEEEEeeCCCCEEEEEEc-CCcEEEEeCC-CCcEEE--Eec
Q 005352 373 --------IDKTVRLWRVG-NDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVL-SCHVVD--WVD 434 (701)
Q Consensus 373 --------~dg~I~iWd~~-~~~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~-dg~v~iwd~~-~~~~~~--~~~ 434 (701)
.++++.+|++. .++....+. +...+.+++|+| ++++|+++.. ++.|++||+. +++... ...
T Consensus 109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 187 (365)
T 1jof_A 109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVD 187 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred eccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe
Confidence 68999999997 455543332 456799999999 9998887664 6789999998 676532 222
Q ss_pred ---CCCcEEEEEEeeCCCeEEEEec-CCcEEEEECC--CCeeeee-eeEEeecc-cCCCCC------CeeEEE-EecCCC
Q 005352 435 ---IRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVS--DNHLELD-AEICVHSK-KKAPCK------RITGFQ-FLPQDS 499 (701)
Q Consensus 435 ---~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~--~~~~~~~-~~~~~~~~-~~~~~~------~i~~l~-~~p~~~ 499 (701)
+...+..++|+|+|+++++++. ++.|.+|++. ++++... ..+..... ...+.. .+..++ |+| ++
T Consensus 188 ~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG 266 (365)
T 1jof_A 188 APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SG 266 (365)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TS
T ss_pred cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CC
Confidence 2566899999999999988775 6899999875 3443211 11111100 011111 578999 999 67
Q ss_pred CEEEEEECC-C-----cEEEEeCC-ccceee--e-cccCCCCeEEEEEec---CCCEEEEEeCC-CcEEEEeCCCC
Q 005352 500 SKVMVSCAD-S-----QVRILQGP-NVIGKY--K-GLRRSGNQLSACFTS---DGKHIVSAGED-SNVYMWNCIGH 561 (701)
Q Consensus 500 ~~l~~~s~d-g-----~I~iwd~~-~~~~~~--~-~~~~~~~v~~l~~s~---dg~~l~sgs~D-g~I~iWd~~~~ 561 (701)
++|+++..+ + .|.+|++. +..... . ...+...+..++|+| +|++|++++.+ +.|.+|+++..
T Consensus 267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 267 KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 777766543 3 89999985 322211 1 111344566789999 89999999865 89999998765
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.71 E-value=1.3e-15 Score=159.71 Aligned_cols=201 Identities=14% Similarity=0.167 Sum_probs=138.5
Q ss_pred CccCeEEEEEecCCeEEEEEC---CCcEEEEECCCCee--eeee-cCCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCC
Q 005352 353 HSGEILDLSWSKNNYLLSASI---DKTVRLWRVGNDHC--LRVF-PHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVL 425 (701)
Q Consensus 353 h~~~I~~l~~s~~~~l~s~s~---dg~I~iWd~~~~~~--~~~~-~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~ 425 (701)
+...+..++|+|++.|++++. ++.|.+|++.+++. +..+ .+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345677899999995554443 68999999977763 3332 2677889999999 999888887 67899999996
Q ss_pred -CCc--EEEEecCC----------CcEEEEEEeeCCCeEEEEecCCcEEEEECC-CCeeeeeeeEEeecccCCCCCCeeE
Q 005352 426 -SCH--VVDWVDIR----------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVS-DNHLELDAEICVHSKKKAPCKRITG 491 (701)
Q Consensus 426 -~~~--~~~~~~~~----------~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 491 (701)
++. .+...... ..+.+++|+|+|+.+++...++.|.+|++. ++.+...... .......+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~-----~~~~g~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL-----TMEAGFGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE-----ECCTTCCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE-----EcCCCCCCce
Confidence 333 22222221 248899999999966666678899999998 4443322111 1112245778
Q ss_pred EEEecCCCCEEEE-EECCCcEEEEeCCc--cce----eeecccC----CCCeEEEEEecCCCEE-EEEeCCCcEEEEeCC
Q 005352 492 FQFLPQDSSKVMV-SCADSQVRILQGPN--VIG----KYKGLRR----SGNQLSACFTSDGKHI-VSAGEDSNVYMWNCI 559 (701)
Q Consensus 492 l~~~p~~~~~l~~-~s~dg~I~iwd~~~--~~~----~~~~~~~----~~~v~~l~~s~dg~~l-~sgs~Dg~I~iWd~~ 559 (701)
++|+| +++++++ ...++.|.+|++.. ... ....... ...+..++|+|+|++| ++...++.|.+|++.
T Consensus 192 ~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 192 LVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred EEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 99999 5665555 56689999998763 211 1111111 1458899999999988 555678999999986
Q ss_pred C
Q 005352 560 G 560 (701)
Q Consensus 560 ~ 560 (701)
.
T Consensus 271 ~ 271 (347)
T 3hfq_A 271 A 271 (347)
T ss_dssp G
T ss_pred C
Confidence 3
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.70 E-value=5.7e-17 Score=187.78 Aligned_cols=242 Identities=10% Similarity=0.051 Sum_probs=165.0
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEE
Q 005352 255 TMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVV 334 (701)
Q Consensus 255 ~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (701)
.++|+|+|++++++ .|+.|++||+.+++...
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~------------------------------------------------ 50 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYT------------------------------------------------ 50 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEE------------------------------------------------
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEE------------------------------------------------
Confidence 78999999766555 69999999998875321
Q ss_pred cCCccccccCCCeEEEcCCcc---CeEEEEEecCC-eEEEEEC---------CCcEEEEECCCCeeeeeecCCCCeEEEE
Q 005352 335 FPPKVFRILEKPLHEFHGHSG---EILDLSWSKNN-YLLSASI---------DKTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (701)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~h~~---~I~~l~~s~~~-~l~s~s~---------dg~I~iWd~~~~~~~~~~~h~~~V~~l~ 401 (701)
.+.+|.. .|.+++|||+| +|++++. ++.|++||+.+++.+........+..++
T Consensus 51 --------------~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~ 116 (719)
T 1z68_A 51 --------------ILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLC 116 (719)
T ss_dssp --------------EECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEE
T ss_pred --------------EEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccce
Confidence 1222322 48899999999 7887776 7899999999998742222346789999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec--CCCcE-----------------EEEEEeeCCCeEEEEecCC----
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD--IRQIV-----------------TAVCYRPDGQGGIVGSMMG---- 458 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~i-----------------~~i~~sp~g~~l~~gs~dg---- 458 (701)
|+| +++.|+.+. ++.|++||+.+++...+.. +...+ .+++|+|||+.|+.++.+.
T Consensus 117 ~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~ 194 (719)
T 1z68_A 117 WSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP 194 (719)
T ss_dssp ECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSC
T ss_pred ECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCc
Confidence 999 999999886 7899999998887664432 22222 4899999999999987652
Q ss_pred ------------------------------cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 459 ------------------------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 459 ------------------------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
.|++||+.+++......+........+...+..++|+|+ +.++++....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~ 273 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD-ERVCLQWLKR 273 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS-SEEEEEEEES
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC-CeEEEEEecc
Confidence 688899887653100011000111235567899999994 6666664433
Q ss_pred ----CcEEEEe----CCccceeeec----ccCCCCeE-----EEEEecCCCEEEE--EeCCC--cEEEEeCCCCC
Q 005352 509 ----SQVRILQ----GPNVIGKYKG----LRRSGNQL-----SACFTSDGKHIVS--AGEDS--NVYMWNCIGHE 562 (701)
Q Consensus 509 ----g~I~iwd----~~~~~~~~~~----~~~~~~v~-----~l~~s~dg~~l~s--gs~Dg--~I~iWd~~~~~ 562 (701)
..|.+|| ..+....... ..+...+. .+.|+|||+.|+. ...+| .|++|++.+++
T Consensus 274 ~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 274 VQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp STTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred ccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 2488899 6543322221 23455555 7899999996554 44555 57777877655
No 159
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=7.5e-14 Score=141.96 Aligned_cols=246 Identities=7% Similarity=0.078 Sum_probs=174.9
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
+|-..+.+|+++++|+++++...++.|.+||.. ++.+..+....
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~----------------------------------- 70 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG----------------------------------- 70 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS-----------------------------------
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC-----------------------------------
Confidence 466789999999999998888889999999975 33222221000
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe-cCCeEEEEEC--CCcEEEEECCCCeeeeeec--CCCCeEEEEE
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-KNNYLLSASI--DKTVRLWRVGNDHCLRVFP--HSNYVTCVHF 402 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s-~~~~l~s~s~--dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f 402 (701)
...+|...+..+++. +++.|+.+.. ++.|.+|| .+++.+..+. +...+.++++
T Consensus 71 ---------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~ 128 (286)
T 1q7f_A 71 ---------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTV 128 (286)
T ss_dssp ---------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEE
T ss_pred ---------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEE
Confidence 002345568899995 6675555543 88999999 5677776664 3457899999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe---cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~---~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
+| +++++++...++.|.+||.. ++.+... .....+..++++|+|+.+++...++.|++|+........ .
T Consensus 129 ~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~-----~- 200 (286)
T 1q7f_A 129 DN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQ-----I- 200 (286)
T ss_dssp CT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEE-----E-
T ss_pred eC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEE-----E-
Confidence 99 88888887778999999965 4444433 233568999999999977777889999999986542211 1
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEECCC-cEEEEeCCcc-ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADS-QVRILQGPNV-IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg-~I~iwd~~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
. .......+.++++.+ ++.++++...++ .|.+||.... ...+........+.+++++|+|+++++ +.|+.|++|+
T Consensus 201 ~-~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 201 G-GEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp S-CTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred c-cCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence 1 112235688999999 677777777776 9999996532 233333223345789999999987777 6799999999
Q ss_pred CCCCC
Q 005352 558 CIGHE 562 (701)
Q Consensus 558 ~~~~~ 562 (701)
+....
T Consensus 278 ~~~~~ 282 (286)
T 1q7f_A 278 YVQLA 282 (286)
T ss_dssp CSCCC
T ss_pred ccccc
Confidence 86543
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.68 E-value=1.9e-15 Score=160.95 Aligned_cols=279 Identities=11% Similarity=0.027 Sum_probs=176.0
Q ss_pred eeeecCccccccccc-cce--EEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCe
Q 005352 207 ERVRLNEEDAMFCSK-VQR--VKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~-d~~--v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~ 283 (701)
..+++++..+++.+. ++. |.+|+.... +... ...+|...+..+.|+|||++|+.++.++.|.+||+.+++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--~~~~-----lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~ 113 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--VATQ-----LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE 113 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC--EEEE-----CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC--ceEE-----eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 357778888888776 664 555554332 2221 223455555567899999999999999999999998875
Q ss_pred eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE--
Q 005352 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-- 361 (701)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~-- 361 (701)
...... .+...+....
T Consensus 114 ~~~~~~--------------------------------------------------------------~~~~~~~~~~~~ 131 (388)
T 3pe7_A 114 ENVVYQ--------------------------------------------------------------VPAEWVGYGTWV 131 (388)
T ss_dssp EEEEEE--------------------------------------------------------------CCTTEEEEEEEE
T ss_pred ceeeee--------------------------------------------------------------chhhccccccee
Confidence 332221 1222222222
Q ss_pred EecCC-eEEE----------------------EECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC--
Q 005352 362 WSKNN-YLLS----------------------ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-- 416 (701)
Q Consensus 362 ~s~~~-~l~s----------------------~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d-- 416 (701)
+++++ +++. ...+..|.+||+.+++......+...+..++|+|.+++.|+....+
T Consensus 132 ~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~ 211 (388)
T 3pe7_A 132 ANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPH 211 (388)
T ss_dssp ECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCT
T ss_pred ECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCC
Confidence 25555 3332 2244679999999998777777788899999999556777766653
Q ss_pred ----CcEEEEeCCCCcEEEEecCC--CcEEEEEEeeCCCeEEEEec-CC----cEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 417 ----GKVRIWAVLSCHVVDWVDIR--QIVTAVCYRPDGQGGIVGSM-MG----DCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 417 ----g~v~iwd~~~~~~~~~~~~~--~~i~~i~~sp~g~~l~~gs~-dg----~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
..|.++|+..+....+..+. ..+..++|+|+|+.|+..+. ++ .|++||+.+++..............
T Consensus 212 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~-- 289 (388)
T 3pe7_A 212 DLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLM-- 289 (388)
T ss_dssp TTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEE--
T ss_pred CCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeee--
Confidence 37888888777665555544 35788999999998866443 22 3999999988653322111000000
Q ss_pred CCCeeEEEEecCCCCEEEEE---------ECCCcEEEEeCCccceeeecccCCC-----------CeEEEEEecCCCEEE
Q 005352 486 CKRITGFQFLPQDSSKVMVS---------CADSQVRILQGPNVIGKYKGLRRSG-----------NQLSACFTSDGKHIV 545 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~---------s~dg~I~iwd~~~~~~~~~~~~~~~-----------~v~~l~~s~dg~~l~ 545 (701)
.....+.|+| ++..|+.. ..+..|++||+...... ....+.. .+..++|+|||++|+
T Consensus 290 -~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~ 366 (388)
T 3pe7_A 290 -SNYDGSLMVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQIL 366 (388)
T ss_dssp -ECTTSSEEEE-EECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEE
T ss_pred -ecCCCCeEcc-CCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEE
Confidence 0011236889 45555543 45678999998754322 1112333 478889999999888
Q ss_pred EEe-CCCcEEEEeCC
Q 005352 546 SAG-EDSNVYMWNCI 559 (701)
Q Consensus 546 sgs-~Dg~I~iWd~~ 559 (701)
.++ .+|...||.++
T Consensus 367 ~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 367 FTSDVHGKPALYLAT 381 (388)
T ss_dssp EEECTTSSCEEEEEE
T ss_pred EEecCCCceeEEEEE
Confidence 665 46777777654
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.67 E-value=1e-15 Score=160.01 Aligned_cols=236 Identities=10% Similarity=0.085 Sum_probs=165.1
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCC--CeEEEEEeeCCCCEEE-EEEcCCcEEEEeCCCCcEEEEecC
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSN--YVTCVHFNPVDDNYFI-SGSIDGKVRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~--~V~~l~f~p~~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~~ 435 (701)
+++++++ ++++++.+++|++||+.+++.+..+.... .+..++|+| ++++++ ++..++.|.+||+.+++.+.....
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 4567777 88899999999999999999988887544 688999999 887654 555689999999999887755543
Q ss_pred CC-------cEEEEEEeeCCCeEEEEecC------------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 436 RQ-------IVTAVCYRPDGQGGIVGSMM------------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 436 ~~-------~i~~i~~sp~g~~l~~gs~d------------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
.. .+..++|+|+|+++++++.+ +.|.+||+.+++........ .....+.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF------PMPRQVYLMRAAD 157 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE------ECCSSCCCEEECT
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec------cCCCcccceeECC
Confidence 22 27889999999999998865 89999999875432111110 1123578899999
Q ss_pred CCCCEEEEEECCCcEEEEeCCccceeeecccC------------------------------------------------
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVIGKYKGLRR------------------------------------------------ 528 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~------------------------------------------------ 528 (701)
++. +++++ +.|++||..+.........+
T Consensus 158 -dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 158 -DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp -TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred -CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 556 55543 34999998653322111000
Q ss_pred --------------------CCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEec
Q 005352 529 --------------------SGNQLSACFTS-DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIP 587 (701)
Q Consensus 529 --------------------~~~v~~l~~s~-dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 587 (701)
...+..++|+| +|++|+++ ++.|++||+.+++.. ..+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~--------~~~~----------- 292 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI--------KAAN----------- 292 (349)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE--------EEEE-----------
T ss_pred eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE--------EEEc-----------
Confidence 11355677889 99999888 889999998876511 0000
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccc
Q 005352 588 WCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQL 649 (701)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~ 649 (701)
....+..++++|+ +..+++++.++.+.+|+.+....+..+
T Consensus 293 ------------------~~~~~~~~~~s~d----g~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 293 ------------------LDHTYYCVAFDKK----GDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp ------------------CSSCCCEEEECSS----SSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred ------------------CCCCccceEECCC----CCEEEEecCCCeEEEEeccccceeeee
Confidence 0112345678887 555666677889999998887766554
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.67 E-value=5.1e-16 Score=179.78 Aligned_cols=198 Identities=9% Similarity=0.073 Sum_probs=143.6
Q ss_pred EEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCC----CeEEEEEeeCCCCEEEEEEc---------CCcEEEEeCC
Q 005352 359 DLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSN----YVTCVHFNPVDDNYFISGSI---------DGKVRIWAVL 425 (701)
Q Consensus 359 ~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~----~V~~l~f~p~~~~~l~sgs~---------dg~v~iwd~~ 425 (701)
+++|+|++.++..+.|++|++||+.++++...+.+.. .+.+++|+| ++++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6799999966666679999999999999887776432 389999999 9999998876 6899999999
Q ss_pred CCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC----CCC---------CCeeEE
Q 005352 426 SCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK----APC---------KRITGF 492 (701)
Q Consensus 426 ~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~----~~~---------~~i~~l 492 (701)
+++.+........+..++|+|||+.|+.+. ++.|++|++.+++..... ...... .+. ....++
T Consensus 99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~---~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT---FNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC---CCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred CCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe---cCCCcCCeEcccccceeeeecccCcccE
Confidence 988732122235688999999999999885 789999999877543211 000000 000 122589
Q ss_pred EEecCCCCEEEEEECCC----------------------------------cEEEEeCCcccee----ee----cccCCC
Q 005352 493 QFLPQDSSKVMVSCADS----------------------------------QVRILQGPNVIGK----YK----GLRRSG 530 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~dg----------------------------------~I~iwd~~~~~~~----~~----~~~~~~ 530 (701)
.|+| +++.|++++.|. .|++||+...... +. ...+..
T Consensus 175 ~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 175 WWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 9999 788888887652 7889998765431 11 123667
Q ss_pred CeEEEEEecCCCEEEEEeCC----CcEEEEe----CCCCC
Q 005352 531 NQLSACFTSDGKHIVSAGED----SNVYMWN----CIGHE 562 (701)
Q Consensus 531 ~v~~l~~s~dg~~l~sgs~D----g~I~iWd----~~~~~ 562 (701)
.+..++|+||++++++.... ..|++|| +.+++
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 88999999998877775432 2488888 65554
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.67 E-value=3.6e-14 Score=149.61 Aligned_cols=270 Identities=11% Similarity=0.122 Sum_probs=172.0
Q ss_pred eeeecCcccccccccc----ceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEeec
Q 005352 207 ERVRLNEEDAMFCSKV----QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQVVE 281 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d----~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~iWd~~~ 281 (701)
..+++++..+++++.+ +.|.+|+++.....+..+ ..+..+......+++ ++++|++++ .++.|.+|++..
T Consensus 55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~---~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL---NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ 129 (361)
T ss_dssp EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE---EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe---eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence 4556666667776654 799999986542222211 223345667788888 888887776 578999999976
Q ss_pred CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE
Q 005352 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (701)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 361 (701)
...+..... ...... ........+...+.+++
T Consensus 130 ~g~~~~~~~--------~~~~~g----------------------------------------~~~~~~~~~~~~~~~~~ 161 (361)
T 3scy_A 130 DGALLPASD--------VIEFKG----------------------------------------SGPDKERQTMPHLHCVR 161 (361)
T ss_dssp TSCBCSCSE--------EEECCC----------------------------------------CCSCTTTCSSCCEEEEE
T ss_pred CCcCcccce--------eEEccC----------------------------------------CCCCccccCCCcceEEE
Confidence 432211100 000000 00000012344578899
Q ss_pred EecCC-eEEEEE-CCCcEEEEECCCCee--------------eeeecCCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeC
Q 005352 362 WSKNN-YLLSAS-IDKTVRLWRVGNDHC--------------LRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAV 424 (701)
Q Consensus 362 ~s~~~-~l~s~s-~dg~I~iWd~~~~~~--------------~~~~~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~ 424 (701)
|+|++ +|++++ .++.|.+|++..... .........+..++|+| +++++++++ .++.|.+|++
T Consensus 162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~ 240 (361)
T 3scy_A 162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRY 240 (361)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEe
Confidence 99999 565555 488999998875431 12233556788999999 998887777 6899999999
Q ss_pred CCCcEEEE--e----cCCCcEEEEEEeeCCCeEEEEecC--CcEEEEECC--CCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 425 LSCHVVDW--V----DIRQIVTAVCYRPDGQGGIVGSMM--GDCRFYNVS--DNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 425 ~~~~~~~~--~----~~~~~i~~i~~sp~g~~l~~gs~d--g~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
.+++.... . .+...+..++|+|+|++|+++..+ +.|.+|++. ++.......+.. ...+.+++|
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-------g~~~~~~~~ 313 (361)
T 3scy_A 241 ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-------GIHPRNFII 313 (361)
T ss_dssp ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-------SSCCCEEEE
T ss_pred cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-------CCCCceEEE
Confidence 87754322 1 122447899999999999777664 889999996 344322221111 245778999
Q ss_pred ecCCCCEEEEEE-CCCcEEEEeCC--ccceeeec-ccCCCCeEEEEEe
Q 005352 495 LPQDSSKVMVSC-ADSQVRILQGP--NVIGKYKG-LRRSGNQLSACFT 538 (701)
Q Consensus 495 ~p~~~~~l~~~s-~dg~I~iwd~~--~~~~~~~~-~~~~~~v~~l~~s 538 (701)
+| ++++|++++ .++.|.+|++. +....... ..+...+.|+.|.
T Consensus 314 sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 314 TP-NGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CT-TSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CC-CCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99 677777777 67899996543 43333222 1244578888885
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.67 E-value=1.4e-15 Score=176.59 Aligned_cols=250 Identities=10% Similarity=0.078 Sum_probs=166.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
...++.|+|||++|+++ |+.|++||+.+++....+..+..
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~-------------------------------------- 57 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF-------------------------------------- 57 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT--------------------------------------
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhh--------------------------------------
Confidence 35689999999999987 89999999988764322221100
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECC---------CcEEEEECCCCeeeeeecCCCCeEEEE
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID---------KTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~d---------g~I~iWd~~~~~~~~~~~h~~~V~~l~ 401 (701)
..+.....+++|||++ +|+.++.+ +.+.+||+.++++.....+...+...+
T Consensus 58 -------------------~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~ 118 (740)
T 4a5s_A 58 -------------------DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVT 118 (740)
T ss_dssp -------------------TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEE
T ss_pred -------------------hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeE
Confidence 0111233468899999 88887776 566799999999877666788899999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec--CCCcE-----------------EEEEEeeCCCeEEEEecCC----
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD--IRQIV-----------------TAVCYRPDGQGGIVGSMMG---- 458 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~i-----------------~~i~~sp~g~~l~~gs~dg---- 458 (701)
|+| +++.|+.+. ++.|++|++.+++...+.. ....+ ..+.|+|||+.|+.++.|.
T Consensus 119 ~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~ 196 (740)
T 4a5s_A 119 WSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP 196 (740)
T ss_dssp ECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC
T ss_pred ECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCc
Confidence 999 999998885 7899999999887654432 22222 3489999999999875432
Q ss_pred --------------------------------cEEEEECCC---CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 459 --------------------------------DCRFYNVSD---NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 459 --------------------------------~v~i~d~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
.|++||+.+ +.......+........+...+..++|+| +++.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~ 275 (740)
T 4a5s_A 197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISL 275 (740)
T ss_dssp EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEE
T ss_pred eEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEE
Confidence 366677766 42100001110000012456688999999 566665
Q ss_pred EEEC----CCcEEEEeCCccc--------eeeecccCCCCeE-----EEEEecCCCEEE-EEeC-C--CcEEEEeCCCCC
Q 005352 504 VSCA----DSQVRILQGPNVI--------GKYKGLRRSGNQL-----SACFTSDGKHIV-SAGE-D--SNVYMWNCIGHE 562 (701)
Q Consensus 504 ~~s~----dg~I~iwd~~~~~--------~~~~~~~~~~~v~-----~l~~s~dg~~l~-sgs~-D--g~I~iWd~~~~~ 562 (701)
.... +..|++||..+.. ..+....+...+. ..+|+|||+.|+ ..+. + ..|++|++.+++
T Consensus 276 ~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 276 QWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred EEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 5443 3369999976543 1111122444333 688999999877 6654 3 458888988765
Q ss_pred C
Q 005352 563 E 563 (701)
Q Consensus 563 ~ 563 (701)
.
T Consensus 356 ~ 356 (740)
T 4a5s_A 356 C 356 (740)
T ss_dssp C
T ss_pred e
Confidence 3
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.66 E-value=5.2e-15 Score=157.49 Aligned_cols=246 Identities=14% Similarity=0.088 Sum_probs=164.0
Q ss_pred eccCCCcEEE-----EEEccCCCEEEEEeC-CCc--EEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccc
Q 005352 246 IQAHDGSILT-----MKFSPDGQYLASAGD-DGV--VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEK 317 (701)
Q Consensus 246 l~~H~~~I~~-----l~fspdg~~Lasgs~-Dg~--I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (701)
+..|.+.... .+|+|||++||.++. ++. |.+||+.+++...
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~------------------------------- 74 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ------------------------------- 74 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------------------
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------------------
Confidence 4446655555 789999999999887 674 7777776664221
Q ss_pred ceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCC
Q 005352 318 ISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSN 395 (701)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~ 395 (701)
...+|...+..+.|+|++ .|+.++.++.|++||+.+++....+. +..
T Consensus 75 -------------------------------lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~ 123 (388)
T 3pe7_A 75 -------------------------------LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE 123 (388)
T ss_dssp -------------------------------CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT
T ss_pred -------------------------------eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh
Confidence 112344444466899999 89999999999999999998776665 334
Q ss_pred CeEEEE--EeeCCCCEEEEEE----------------------cCCcEEEEeCCCCcEEEEecCCCcEEEEEEee-CCCe
Q 005352 396 YVTCVH--FNPVDDNYFISGS----------------------IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQG 450 (701)
Q Consensus 396 ~V~~l~--f~p~~~~~l~sgs----------------------~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~ 450 (701)
.+.... ++| ++.+++... .+..|.+||+.+++...+..+...+..++|+| +|+.
T Consensus 124 ~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~ 202 (388)
T 3pe7_A 124 WVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDST 202 (388)
T ss_dssp EEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEE
T ss_pred cccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCE
Confidence 443343 477 888877432 34679999999998888777788899999999 9998
Q ss_pred EEEEecC------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE-EECCC----cEEEEeCCcc
Q 005352 451 GIVGSMM------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV-SCADS----QVRILQGPNV 519 (701)
Q Consensus 451 l~~gs~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~-~s~dg----~I~iwd~~~~ 519 (701)
|+..... ..|.++|+........ . .......+....|+| +++.|+. +..++ .|++||+.+.
T Consensus 203 l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~--~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 203 VAFCHEGPHDLVDARMWLINEDGTNMRKV-----K--THAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp EEEEECSCTTTSSCSEEEEETTSCCCEES-----C--CCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred EEEEEecCCCCCcceEEEEeCCCCceEEe-----e--eCCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecCCC
Confidence 8877653 3788888776543211 0 011112477889999 5665544 33322 3999998754
Q ss_pred ceee--ecccCC---CCeEEEEEecCCCEEEEE---------eCCCcEEEEeCCCCC
Q 005352 520 IGKY--KGLRRS---GNQLSACFTSDGKHIVSA---------GEDSNVYMWNCIGHE 562 (701)
Q Consensus 520 ~~~~--~~~~~~---~~v~~l~~s~dg~~l~sg---------s~Dg~I~iWd~~~~~ 562 (701)
.... ....+. .....++|+|||++|+.. ..+..|++||+.+++
T Consensus 275 ~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 275 ENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp CEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred ceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 4222 111100 001123699999988754 456789999998765
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.63 E-value=2.5e-14 Score=150.99 Aligned_cols=271 Identities=12% Similarity=0.098 Sum_probs=179.8
Q ss_pred ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEeecCeeeeeecC
Q 005352 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDI 290 (701)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~iWd~~~~~~~~~~~~ 290 (701)
.++.|.+||...... . ..+..+..+ .++|+|||++|+++. .++.|.+||+.+.+.+.++..
T Consensus 29 ~d~~v~v~D~~t~~~--~-----~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~ 99 (361)
T 2oiz_A 29 TESRVHVYDYTNGKF--L-----GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL 99 (361)
T ss_dssp GGCEEEEEETTTCCE--E-----EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEE
T ss_pred ccCeEEEEECCCCeE--E-----EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEc
Confidence 478999998643321 1 235555555 899999999999886 367899999887765544432
Q ss_pred CCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE
Q 005352 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL 369 (701)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~ 369 (701)
.... ..+......++++|++ +|+
T Consensus 100 ~~~~--------------------------------------------------------~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 100 PPKR--------------------------------------------------------VQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp CTTB--------------------------------------------------------CCBCCCGGGEEECTTSSEEE
T ss_pred Cccc--------------------------------------------------------cccCCCcceEEECCCCCEEE
Confidence 1100 0022345678999999 777
Q ss_pred EEEC--CCcEEEEECCCCeeeee-ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-CcEEEE------ecCCCcE
Q 005352 370 SASI--DKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVVDW------VDIRQIV 439 (701)
Q Consensus 370 s~s~--dg~I~iWd~~~~~~~~~-~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-~~~~~~------~~~~~~i 439 (701)
++.. +++|.+||+.+++.+.. +..... ..+.+.|.....+++.+.||.+.+|++.. ++.... +......
T Consensus 124 v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~ 202 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP 202 (361)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC
T ss_pred EECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc
Confidence 7764 68999999999999888 765443 33567774457888999999999999865 554411 1111112
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc----cCCCCCCeeEEEEecCCCCEEEEEEC--------
Q 005352 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----KKAPCKRITGFQFLPQDSSKVMVSCA-------- 507 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~~p~~~~~l~~~s~-------- 507 (701)
..+.+.|++..++..+.++.+.++|+..........+..... ..........++++| ++..++++..
T Consensus 203 ~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~ 281 (361)
T 2oiz_A 203 IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTH 281 (361)
T ss_dssp BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCT
T ss_pred eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccc
Confidence 233446788888888889999999997654332221111110 000001112368899 4455555432
Q ss_pred ---CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 508 ---DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 508 ---dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.+.|.+||..+.........+. +.+++|+|+|++|++++. +.|.+||..++
T Consensus 282 ~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 282 KFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred cCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3589999998766554443344 899999999999999887 99999999887
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.63 E-value=2.5e-14 Score=151.25 Aligned_cols=198 Identities=9% Similarity=0.102 Sum_probs=138.6
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECC-CCeeeeeecC--CCCeEEEEEeeCCCCE--EEEEE-------------c
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVG-NDHCLRVFPH--SNYVTCVHFNPVDDNY--FISGS-------------I 415 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~-~~~~~~~~~h--~~~V~~l~f~p~~~~~--l~sgs-------------~ 415 (701)
..+..++|+|++ +|++++.+ .|.+|++. +++......+ .+.+.+++|+| ++++ ++++. .
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 457789999999 78888888 99999997 7776554432 23466789999 8884 44542 6
Q ss_pred CCcEEEEeCC-CCcEEEEe-----cCCCcEEEEEEeeCCCeEEEEec-CCcEEEEECC-CCeeeeeeeEEeecccCCCCC
Q 005352 416 DGKVRIWAVL-SCHVVDWV-----DIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVS-DNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 416 dg~v~iwd~~-~~~~~~~~-----~~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~ 487 (701)
++.+.+|++. .++..... .+...+..++|+|+|++++++.. ++.|++|++. +++......+. ...+..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~----~~~~g~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD----APDPGD 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE----CSSTTC
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe----cCCCCC
Confidence 8999999997 45544322 24567999999999998887764 6799999998 56543211111 011235
Q ss_pred CeeEEEEecCCCCEEEEEEC-CCcEEEEeCC--ccce-----eeeccc-----CCC------CeEEEE-EecCCCEEEEE
Q 005352 488 RITGFQFLPQDSSKVMVSCA-DSQVRILQGP--NVIG-----KYKGLR-----RSG------NQLSAC-FTSDGKHIVSA 547 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~-dg~I~iwd~~--~~~~-----~~~~~~-----~~~------~v~~l~-~s~dg~~l~sg 547 (701)
.+..++|+| +++++++++. ++.|.+|+.. +... ...... +.. .+..++ |+|||++|+++
T Consensus 194 ~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 194 HPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence 688999999 6777777765 7899999754 2221 111111 111 488999 99999998877
Q ss_pred eCCC------cEEEEeCC
Q 005352 548 GEDS------NVYMWNCI 559 (701)
Q Consensus 548 s~Dg------~I~iWd~~ 559 (701)
+.+. .|.+|+++
T Consensus 273 ~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 273 SRANKFELQGYIAGFKLR 290 (365)
T ss_dssp EEESSTTSCCEEEEEEEC
T ss_pred CCCCCCCCCCeEEEEEEC
Confidence 5432 89999986
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.61 E-value=7.3e-13 Score=137.77 Aligned_cols=202 Identities=11% Similarity=0.064 Sum_probs=143.9
Q ss_pred CCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe-eeeeec----------CCCCeEEEEEeeCCCCEEEEEE-cCCc
Q 005352 352 GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-CLRVFP----------HSNYVTCVHFNPVDDNYFISGS-IDGK 418 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~-~~~~~~----------h~~~V~~l~f~p~~~~~l~sgs-~dg~ 418 (701)
++......|++++++ ++++...++.|++||..... .+..+. +-..+..++++|.+++++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 344578899999999 77777788999999986542 455442 2346899999985677777775 6899
Q ss_pred EEEEeCCCCcEEEEecC-----------CCcEEEEEEeeC-CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCC
Q 005352 419 VRIWAVLSCHVVDWVDI-----------RQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486 (701)
Q Consensus 419 v~iwd~~~~~~~~~~~~-----------~~~i~~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 486 (701)
|++|| .+++.+..... -..+..++++|+ +..+++...++.|++|+..+++..... ......
T Consensus 168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~------~~~~~~ 240 (329)
T 3fvz_A 168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI------KHASFG 240 (329)
T ss_dssp EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE------CCTTTT
T ss_pred EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE------eccccC
Confidence 99999 45655544431 123889999998 677777778899999999866543221 112334
Q ss_pred CCeeEEEEecCCCCEEEEEE-------CCCcEEEEeCCccceeeec---ccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 487 KRITGFQFLPQDSSKVMVSC-------ADSQVRILQGPNVIGKYKG---LRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~s-------~dg~I~iwd~~~~~~~~~~---~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
..+..+++.| +..+.+.+ .+..|++|+..+....... ..+...+..++++|+|.++++...++.|++|
T Consensus 241 ~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 241 RNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF 318 (329)
T ss_dssp TCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred CCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence 5677888888 33333332 3458999998755443332 2356678999999999888888899999999
Q ss_pred eCCCCC
Q 005352 557 NCIGHE 562 (701)
Q Consensus 557 d~~~~~ 562 (701)
++....
T Consensus 319 ~~~~~~ 324 (329)
T 3fvz_A 319 TLTEKM 324 (329)
T ss_dssp EEEECS
T ss_pred eCCccc
Confidence 987543
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.59 E-value=1.2e-13 Score=158.27 Aligned_cols=204 Identities=8% Similarity=-0.005 Sum_probs=136.4
Q ss_pred CccCeEEEEEecCC-eEEEEECC----------CcEEEEECCC------Ceeeeee-cCCCCeEEEEEeeCCCCEEEEEE
Q 005352 353 HSGEILDLSWSKNN-YLLSASID----------KTVRLWRVGN------DHCLRVF-PHSNYVTCVHFNPVDDNYFISGS 414 (701)
Q Consensus 353 h~~~I~~l~~s~~~-~l~s~s~d----------g~I~iWd~~~------~~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs 414 (701)
|...+..++|+|+| .|++++.+ ..|++||+.+ ++..... .+...+..++|+| ++++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEE
Confidence 56678899999999 88888776 5899999988 6665555 5667788899999 999999887
Q ss_pred cCC--------cEEEEeCC-CC---cEEEEec-CCCcEEEEEEeeCCCeEEEEecCC--cEEEEECCCCeeeeeeeEEee
Q 005352 415 IDG--------KVRIWAVL-SC---HVVDWVD-IRQIVTAVCYRPDGQGGIVGSMMG--DCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 415 ~dg--------~v~iwd~~-~~---~~~~~~~-~~~~i~~i~~sp~g~~l~~gs~dg--~v~i~d~~~~~~~~~~~~~~~ 479 (701)
.++ .|++||+. ++ +...+.. +...+..++|+|||+.++++..++ .|.+||+.+++...... ..
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~--~~ 284 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR--RE 284 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC--CS
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc--cc
Confidence 553 79999998 56 4444444 367899999999999888888888 56666665554322111 00
Q ss_pred cccCC--CCCCeeEEEEecCCCCEEEEEECCCcEEEE--eCCccceeeecccCCCCeEEE-EEecCCCEEEEEeCCC--c
Q 005352 480 SKKKA--PCKRITGFQFLPQDSSKVMVSCADSQVRIL--QGPNVIGKYKGLRRSGNQLSA-CFTSDGKHIVSAGEDS--N 552 (701)
Q Consensus 480 ~~~~~--~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw--d~~~~~~~~~~~~~~~~v~~l-~~s~dg~~l~sgs~Dg--~ 552 (701)
..... -...+..++|+| ++.+++++.. +.++|| |..... ......+...+..+ +++.+.-++++++.+. .
T Consensus 285 ~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 361 (662)
T 3azo_A 285 EEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYE 361 (662)
T ss_dssp SBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEE
T ss_pred ccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCE
Confidence 00000 001145688888 6788888888 999998 544322 22223355566666 4443333444555554 4
Q ss_pred EEEEeCCCCC
Q 005352 553 VYMWNCIGHE 562 (701)
Q Consensus 553 I~iWd~~~~~ 562 (701)
|++|++.+++
T Consensus 362 i~~~d~~~g~ 371 (662)
T 3azo_A 362 VVELDTVTGR 371 (662)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 6666766665
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.58 E-value=1.8e-12 Score=134.80 Aligned_cols=269 Identities=10% Similarity=0.038 Sum_probs=175.8
Q ss_pred eeeecCc--cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCee
Q 005352 207 ERVRLNE--EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (701)
Q Consensus 207 ~~~~~~~--~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~ 284 (701)
..+.++. ..++..+.++.+++|.-. . ...+..+...+.+++|+|+|++++++..++.|.+||..+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 9 PTLFYSGKSNSAVPIISESELQTITAE----P------WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp CBCCSCGGGGCSSCCCCGGGSCEEECE----E------EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred ceeeecCCccceeEEeecccCcccccc----e------eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE
Confidence 3444443 344445677888888311 1 123455667789999999999888888899999999876542
Q ss_pred eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
.. ....+...+.++++++
T Consensus 79 ~~--------------------------------------------------------------~~~~~~~~~~~i~~~~ 96 (333)
T 2dg1_A 79 KR--------------------------------------------------------------PFVSHKANPAAIKIHK 96 (333)
T ss_dssp EE--------------------------------------------------------------EEECSSSSEEEEEECT
T ss_pred EE--------------------------------------------------------------EeeCCCCCcceEEECC
Confidence 11 1112456789999999
Q ss_pred CC-eEEEEECC----CcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEc------CCcEEEEeCCCCcEE
Q 005352 365 NN-YLLSASID----KTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSI------DGKVRIWAVLSCHVV 430 (701)
Q Consensus 365 ~~-~l~s~s~d----g~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~------dg~v~iwd~~~~~~~ 430 (701)
++ ++++...+ +.|.+||..++.....+. +...+.+++++| +++++++... .+.|..+|..+++..
T Consensus 97 dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~ 175 (333)
T 2dg1_A 97 DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT 175 (333)
T ss_dssp TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEE
T ss_pred CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEE
Confidence 99 55555555 589999998876653332 446799999999 8887776653 356777777666655
Q ss_pred EEecCCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECCCC-eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 431 DWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 431 ~~~~~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
........+..++|+|+++.++++ +.++.|.+|++.+. ............... ....+.++++.+ ++.++++...+
T Consensus 176 ~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~-~G~l~v~~~~~ 253 (333)
T 2dg1_A 176 PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT-GHEGPDSCCIDS-DDNLYVAMYGQ 253 (333)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC-SSSEEEEEEEBT-TCCEEEEEETT
T ss_pred EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC-CCCCCCceEECC-CCCEEEEEcCC
Confidence 544444568899999999866554 56789999999642 211110000000011 114577899998 67777777788
Q ss_pred CcEEEEeCCcc-ceeeeccc----CCCCeEEEEEecCCCEEEEEeCC
Q 005352 509 SQVRILQGPNV-IGKYKGLR----RSGNQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 509 g~I~iwd~~~~-~~~~~~~~----~~~~v~~l~~s~dg~~l~sgs~D 550 (701)
+.|.+||.... ...+.... +...+.+++|+|+++.|+.++.+
T Consensus 254 ~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 254 GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 99999997532 12222211 11268899999998777666554
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.58 E-value=1.6e-13 Score=159.27 Aligned_cols=265 Identities=8% Similarity=0.075 Sum_probs=164.8
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC---------CcEEEEE
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---------GVVRLWQ 278 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---------g~I~iWd 278 (701)
...+++..++.+ ++.|++|+....... .+.....+..+......+.|||||++|+.++.+ +.+.+||
T Consensus 23 ~w~~dg~~~~~~--~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 23 RWISDHEYLYKQ--ENNILVFNAEYGNSS--VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp EECSSSEEEEEE--TTEEEEEETTTCCEE--EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred EECCCCcEEEEc--CCcEEEEECCCCceE--EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 344444444443 899999998654321 122221222222234558899999999999886 5567999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+++.. .+..|...+.
T Consensus 99 ~~~~~~~---------------------------------------------------------------~l~~~~~~~~ 115 (740)
T 4a5s_A 99 LNKRQLI---------------------------------------------------------------TEERIPNNTQ 115 (740)
T ss_dssp TTTTEEC---------------------------------------------------------------CSSCCCTTEE
T ss_pred CCCCcEE---------------------------------------------------------------EcccCCCcce
Confidence 9887521 1234667899
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCe-----------------EEEEEeeCCCCEEEEEEcCC-
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYV-----------------TCVHFNPVDDNYFISGSIDG- 417 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V-----------------~~l~f~p~~~~~l~sgs~dg- 417 (701)
..+|||+| .|+.+ .++.|++|++.+++..+... +...+ ..+.|+| |+++|+.++.|.
T Consensus 116 ~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~ 193 (740)
T 4a5s_A 116 WVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDT 193 (740)
T ss_dssp EEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECT
T ss_pred eeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEccc
Confidence 99999999 77766 57899999998887654332 22222 3589999 999999876332
Q ss_pred -----------------------------------cEEEEeCCC---C---cEEEEec------CCCcEEEEEEeeCCCe
Q 005352 418 -----------------------------------KVRIWAVLS---C---HVVDWVD------IRQIVTAVCYRPDGQG 450 (701)
Q Consensus 418 -----------------------------------~v~iwd~~~---~---~~~~~~~------~~~~i~~i~~sp~g~~ 450 (701)
.|++||+.+ + +...+.. +...+..++|+|||+.
T Consensus 194 ~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~ 273 (740)
T 4a5s_A 194 EVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERI 273 (740)
T ss_dssp TCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEE
T ss_pred CCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeE
Confidence 488899988 7 4444432 6667999999999997
Q ss_pred EEEEec----CCcEEEEECCCCe----eeeeeeEEeecccCCCCCC-----eeEEEEecCCCCEEE-EEEC-C--CcEEE
Q 005352 451 GIVGSM----MGDCRFYNVSDNH----LELDAEICVHSKKKAPCKR-----ITGFQFLPQDSSKVM-VSCA-D--SQVRI 513 (701)
Q Consensus 451 l~~gs~----dg~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~~-----i~~l~~~p~~~~~l~-~~s~-d--g~I~i 513 (701)
++.... +..|.+||+.+++ +.....+.. ..+... .....|+| +++.|+ ..+. + ..|++
T Consensus 274 ~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~----~~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~~~G~~~l~~ 348 (740)
T 4a5s_A 274 SLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE----MSTTGWVGRFRPSEPHFTL-DGNSFYKIISNEEGYRHICY 348 (740)
T ss_dssp EEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE----ECSSSCSSSSSCCCCEECT-TSSEEEEEEECTTSCEEEEE
T ss_pred EEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee----ccCCceEccCcCCCceEcC-CCCEEEEEEEcCCCceEEEE
Confidence 666543 2369999998876 221111100 111122 23678999 566555 5554 3 45777
Q ss_pred EeCCccceeeecccCCCCeEEEEEecCCCEEEEEe
Q 005352 514 LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs 548 (701)
||.......... .....+..+. .++++.|+..+
T Consensus 349 ~~~~~~~~~~lT-~g~~~v~~~~-~~d~~~i~f~~ 381 (740)
T 4a5s_A 349 FQIDKKDCTFIT-KGTWEVIGIE-ALTSDYLYYIS 381 (740)
T ss_dssp EETTCSSCEESC-CSSSCEEEEE-EECSSEEEEEE
T ss_pred EECCCCceEecc-cCCEEEEEEE-EEeCCEEEEEE
Confidence 887654332222 2344555543 24566555443
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.56 E-value=1.9e-13 Score=156.58 Aligned_cols=244 Identities=11% Similarity=0.049 Sum_probs=165.3
Q ss_pred eeccCCCcEEEEEEccCCCEEEEE--eCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASA--GDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasg--s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+.+|...|..++|++++.++++. +.++...||....+.....+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l---------------------------------- 63 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA---------------------------------- 63 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES----------------------------------
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee----------------------------------
Confidence 456799999999999887777777 66889999997443222211
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeE---------EEEEe--cCC-e-EEEEEC-CCcEEEEECC--C-C
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL---------DLSWS--KNN-Y-LLSASI-DKTVRLWRVG--N-D 385 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~---------~l~~s--~~~-~-l~s~s~-dg~I~iWd~~--~-~ 385 (701)
..|...+. ...|+ |++ . |+.++. +..|.+|++. . +
T Consensus 64 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~ 115 (662)
T 3azo_A 64 ----------------------------LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA 115 (662)
T ss_dssp ----------------------------SCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC
T ss_pred ----------------------------CCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC
Confidence 11222222 34555 888 6 665543 5567777765 3 4
Q ss_pred eeeeeec-----CCCCeEEEEEeeCCCCEEEEEEcC----------CcEEEEeCCC------CcEEEEe-cCCCcEEEEE
Q 005352 386 HCLRVFP-----HSNYVTCVHFNPVDDNYFISGSID----------GKVRIWAVLS------CHVVDWV-DIRQIVTAVC 443 (701)
Q Consensus 386 ~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~d----------g~v~iwd~~~------~~~~~~~-~~~~~i~~i~ 443 (701)
+...... |...+..++|+| +++.|++++.+ ..|++||+.+ ++...+. .+...+..++
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 194 (662)
T 3azo_A 116 VPRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPR 194 (662)
T ss_dssp CCEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCE
T ss_pred CCEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCce
Confidence 4333333 456789999999 99999988876 5899999998 6666666 5667788899
Q ss_pred EeeCCCeEEEEecCC--------cEEEEECC-CCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC--cEE
Q 005352 444 YRPDGQGGIVGSMMG--------DCRFYNVS-DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS--QVR 512 (701)
Q Consensus 444 ~sp~g~~l~~gs~dg--------~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg--~I~ 512 (701)
|+|||+.|+.++.++ .|++||+. ++.......+. ..+...+..+.|+| ++++++++..++ .|+
T Consensus 195 ~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-----~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~ 268 (662)
T 3azo_A 195 LSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-----GGPEEAIAQAEWAP-DGSLIVATDRTGWWNLH 268 (662)
T ss_dssp ECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-----EETTBCEEEEEECT-TSCEEEEECTTSSCEEE
T ss_pred ECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-----CCCCceEcceEECC-CCeEEEEECCCCCeEEE
Confidence 999999999887553 79999998 45211111111 11235688999999 566777777788 566
Q ss_pred EEeCCccceeeecccCCCC--------eEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 513 ILQGPNVIGKYKGLRRSGN--------QLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~--------v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
+||............+... +..++|+|+++++++++. +.++||.+
T Consensus 269 ~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 269 RVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp EECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred EEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 6675432211111111111 467899999999999999 99999944
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.56 E-value=7.5e-14 Score=148.65 Aligned_cols=292 Identities=11% Similarity=0.054 Sum_probs=174.8
Q ss_pred eeeecCccccccccc---cceEEEEEccCccchhhhcccCceeccCCCc-EEEEEEccCCCEEEEEeCCCcEEEEEeecC
Q 005352 207 ERVRLNEEDAMFCSK---VQRVKVYHCKKRSKELSALYKGQEIQAHDGS-ILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~---d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~ 282 (701)
..++++++.+++... +..|.+|+..... .. .+..+... ...+.|+|||++|+.++.++.|.+|++.++
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~--~~------~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~ 112 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ--AV------QLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL 112 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTE--EE------ECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCc--EE------EeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence 346677777766533 2356667654322 11 12222223 234789999999999999999999999877
Q ss_pred eeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEE
Q 005352 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (701)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 362 (701)
+.......+.. +. .. +..+++.... ....+ ....+.|
T Consensus 113 ~~~~~~~~~~~------~~-------------~~-------------g~~l~~~~~~------~~~~~-----~~~~~~~ 149 (396)
T 3c5m_A 113 EEQVIYTVDEE------WK-------------GY-------------GTWVANSDCT------KLVGI-----EILKRDW 149 (396)
T ss_dssp CEEEEEECCTT------EE-------------EE-------------EEEEECTTSS------EEEEE-----EEEGGGC
T ss_pred CcEEEEecccc------cC-------------CC-------------CCEEEeccCC------ccccc-----ccccccc
Confidence 54332221110 00 00 0001110000 00000 0112357
Q ss_pred ecCC-eEEEE-----ECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC------CcEEEEeCCCCcEE
Q 005352 363 SKNN-YLLSA-----SIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVV 430 (701)
Q Consensus 363 s~~~-~l~s~-----s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d------g~v~iwd~~~~~~~ 430 (701)
+|++ .++.+ ..+..|.+||+.+++......+...+..+.|+|.++..|+..+.+ ..|.+||+.+++..
T Consensus 150 spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (396)
T 3c5m_A 150 QPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR 229 (396)
T ss_dssp CCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE
T ss_pred CCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee
Confidence 7887 44433 456789999999988877777778899999998446666665543 36889998776655
Q ss_pred EEecC--CCcEEEEEEeeCCCeEEEEecC-----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 431 DWVDI--RQIVTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 431 ~~~~~--~~~i~~i~~sp~g~~l~~gs~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
.+..+ ...+..++|+|+|+.|+.++.+ +.|++||+.+++..... .. .... +.|+|.++.+++
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-----~~-----~~~~-~~~s~~dg~~l~ 298 (396)
T 3c5m_A 230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-----VM-----PPCS-HLMSNFDGSLMV 298 (396)
T ss_dssp ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-----EC-----CSEE-EEEECSSSSEEE
T ss_pred EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-----eC-----CCCC-CCccCCCCceEE
Confidence 44443 2358889999999988877554 44999999877643211 10 0123 788883455666
Q ss_pred EEE----------------CCCcEEEEeCCccce-eeecccCCC-----------CeEEEEEecCCCEEEEEeC-CCc--
Q 005352 504 VSC----------------ADSQVRILQGPNVIG-KYKGLRRSG-----------NQLSACFTSDGKHIVSAGE-DSN-- 552 (701)
Q Consensus 504 ~~s----------------~dg~I~iwd~~~~~~-~~~~~~~~~-----------~v~~l~~s~dg~~l~sgs~-Dg~-- 552 (701)
+++ .+..|++||...... .+.. +.. .+..++|+|+|++|+.++. ++.
T Consensus 299 ~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~ 376 (396)
T 3c5m_A 299 GDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCK--HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPA 376 (396)
T ss_dssp EEECCC----------CCCCCCEEEEEETTTTBCCEEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred EecCCcceeeccccccccCCCCcEEEEecccCceEEccC--CCCccccccccccCCCCCceEccCCCeEEEEecCCCCce
Confidence 654 347899999865432 2222 222 2566889999998887764 455
Q ss_pred EEEEeCCCCC
Q 005352 553 VYMWNCIGHE 562 (701)
Q Consensus 553 I~iWd~~~~~ 562 (701)
|+++++.++.
T Consensus 377 l~~~~~~~~~ 386 (396)
T 3c5m_A 377 IYIADVPESY 386 (396)
T ss_dssp EEEEECCTTC
T ss_pred EEEEEEcccc
Confidence 4444555554
No 174
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.54 E-value=3.4e-13 Score=155.31 Aligned_cols=282 Identities=11% Similarity=0.020 Sum_probs=178.9
Q ss_pred ecCccccccccccc---eEEEEEccCccchhhhcccCce-eccCCCcEEEEEEccCCCEEE-----EEeCCCcEEEEEee
Q 005352 210 RLNEEDAMFCSKVQ---RVKVYHCKKRSKELSALYKGQE-IQAHDGSILTMKFSPDGQYLA-----SAGDDGVVRLWQVV 280 (701)
Q Consensus 210 ~~~~~~~~~~~~d~---~v~vw~~~~~~~~~~~~~~~~~-l~~H~~~I~~l~fspdg~~La-----sgs~Dg~I~iWd~~ 280 (701)
.++++.++....++ .-.+|...........+..... -.+|...+..++|||||++|| .|+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 35566666544332 3555654322222111211111 135777899999999999999 45556789999998
Q ss_pred cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEE
Q 005352 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (701)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 360 (701)
+++.+... .+... ....+
T Consensus 156 tg~~~~~~------------------------------------------------------------~~~~~--~~~~~ 173 (695)
T 2bkl_A 156 SGEWSKVD------------------------------------------------------------VIEGG--KYATP 173 (695)
T ss_dssp TCCBCSSC------------------------------------------------------------CBSCC--TTCCC
T ss_pred CCCCcCCc------------------------------------------------------------ccCcc--cccce
Confidence 87532000 00011 11568
Q ss_pred EEecCC-eEEEEECCCc-------------EEEEECCCCee--eeeec---CCCCeEEEEEeeCCCCEEEEEEcCC----
Q 005352 361 SWSKNN-YLLSASIDKT-------------VRLWRVGNDHC--LRVFP---HSNYVTCVHFNPVDDNYFISGSIDG---- 417 (701)
Q Consensus 361 ~~s~~~-~l~s~s~dg~-------------I~iWd~~~~~~--~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg---- 417 (701)
+|+|+| .|+.++.|.. |++|++.+++. ...+. +...+..+.|+| ++++|+.++.++
T Consensus 174 ~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~ 252 (695)
T 2bkl_A 174 KWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSEN 252 (695)
T ss_dssp EECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEE
T ss_pred EEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCce
Confidence 999999 8888888776 99999998762 22332 446789999999 999888877666
Q ss_pred cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEec----CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEE
Q 005352 418 KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 418 ~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 493 (701)
.|.+|+..+++...+..+...+....+ ++|. ++..+. ++.|.+||+.+.....-..+. .......+..+.
T Consensus 253 ~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~----~~~~~~~l~~~~ 326 (695)
T 2bkl_A 253 DVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIV----PEDSSASLLSVS 326 (695)
T ss_dssp EEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEE----CCCSSCEEEEEE
T ss_pred EEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEe----cCCCCCeEEEEE
Confidence 688887777766666666666666666 6777 555443 578999999765320000111 011134577788
Q ss_pred EecCCCCEEEEEECCCcEEEEeCC-ccceeeeccc-CCCCeEEEEEecCCCEEEEE----eCCCcEEEEeCCCCC
Q 005352 494 FLPQDSSKVMVSCADSQVRILQGP-NVIGKYKGLR-RSGNQLSACFTSDGKHIVSA----GEDSNVYMWNCIGHE 562 (701)
Q Consensus 494 ~~p~~~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~-~~~~v~~l~~s~dg~~l~sg----s~Dg~I~iWd~~~~~ 562 (701)
+. ++.++++...|+..+||... .......... ....+..++++|+++.|+.. ...+.|++||+.+++
T Consensus 327 ~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 327 IV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 87 46788888889988887543 1111111111 25667788899999877633 345789999998876
No 175
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.54 E-value=2.5e-12 Score=131.46 Aligned_cols=240 Identities=10% Similarity=0.015 Sum_probs=165.5
Q ss_pred eeccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 245 EIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
.+..+.....+++|+|+|+ +++++..++.|..|+..++ .
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~-------------------------------------- 61 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L-------------------------------------- 61 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E--------------------------------------
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e--------------------------------------
Confidence 3444566788999999998 7888888999999997654 1
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-----CCCCe
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYV 397 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-----h~~~V 397 (701)
..+..+...+.++++++++ ++++...++.|.+||..+++...... ....+
T Consensus 62 ------------------------~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 117 (296)
T 3e5z_A 62 ------------------------SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSP 117 (296)
T ss_dssp ------------------------EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCC
T ss_pred ------------------------EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCC
Confidence 1122345678899999999 55555556899999998887654432 12356
Q ss_pred EEEEEeeCCCCEEEEE----E-------------cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcE
Q 005352 398 TCVHFNPVDDNYFISG----S-------------IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sg----s-------------~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v 460 (701)
..++++| +++++++. . ..+.|..++.. ++..........+..++|+|+++.+++.+.++.|
T Consensus 118 ~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i 195 (296)
T 3e5z_A 118 NDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNAT 195 (296)
T ss_dssp CCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEE
T ss_pred CCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeE
Confidence 7899999 89888873 2 13456666665 5655556666778999999999999777778999
Q ss_pred EEEECC-CCee-eeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEE-
Q 005352 461 RFYNVS-DNHL-ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACF- 537 (701)
Q Consensus 461 ~i~d~~-~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~- 537 (701)
.+|++. ++.+ .... . . . .....+.++++.+ ++.++++. ++.|.+||.... .......+.. +.+++|
T Consensus 196 ~~~~~~~~g~~~~~~~-~-~-~---~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~g~-~~~~~~~~~~-~~~~~f~ 264 (296)
T 3e5z_A 196 HRYCLNARGETEYQGV-H-F-T---VEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPDGD-ELGRVLTPQT-TSNLCFG 264 (296)
T ss_dssp EEEEECSSSCEEEEEE-E-E-C---CSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTTSC-EEEEEECSSC-CCEEEEE
T ss_pred EEEEECCCCcCcCCCe-E-e-e---CCCCCCCeEEECC-CCCEEEEc--CCeEEEECCCCC-EEEEEECCCC-ceeEEEE
Confidence 999997 3433 1111 1 1 1 1334567789998 56655555 889999998632 2222222444 889999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 538 TSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 538 s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.|+++.|++++.+ .+.-++.++..
T Consensus 265 ~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 265 GPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp STTSCEEEEEETT-EEEEEECSCCB
T ss_pred CCCCCEEEEEcCC-eEEEEEccccc
Confidence 5899999888876 35555555443
No 176
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.54 E-value=2e-12 Score=149.26 Aligned_cols=245 Identities=9% Similarity=0.061 Sum_probs=167.0
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCC-----cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDG-----VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg-----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+|...+..++|||||++||.+..++ .|++||+.+++....
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~----------------------------------- 166 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD----------------------------------- 166 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-----------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-----------------------------------
Confidence 4556789999999999999776543 899999988763221
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCc----------------EEEEECCCC
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKT----------------VRLWRVGND 385 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~----------------I~iWd~~~~ 385 (701)
.+. ...+..++|+|++ .|+.++.++. |++|++.++
T Consensus 167 --------------------------~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~ 218 (710)
T 2xdw_A 167 --------------------------VLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD 218 (710)
T ss_dssp --------------------------EEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC
T ss_pred --------------------------ccc--CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCC
Confidence 011 1125678999999 8888887766 999999887
Q ss_pred ee--eeeec---CCCCeEEEEEeeCCCCEEEEEEc-----CCcEEEEeCCC------C--cEEEEecCCCcEEEEEEeeC
Q 005352 386 HC--LRVFP---HSNYVTCVHFNPVDDNYFISGSI-----DGKVRIWAVLS------C--HVVDWVDIRQIVTAVCYRPD 447 (701)
Q Consensus 386 ~~--~~~~~---h~~~V~~l~f~p~~~~~l~sgs~-----dg~v~iwd~~~------~--~~~~~~~~~~~i~~i~~sp~ 447 (701)
+. ...+. +...+..+.|+| ++++|+.++. +..|++||+.+ + ....+..+...+.. .|+|+
T Consensus 219 ~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~d 296 (710)
T 2xdw_A 219 QSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNE 296 (710)
T ss_dssp GGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEE
T ss_pred cccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEecc
Confidence 63 22222 455688999999 9999888765 56899999976 4 34455555555544 48899
Q ss_pred CCeEEEEecC----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc--EEEEeCCccce
Q 005352 448 GQGGIVGSMM----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ--VRILQGPNVIG 521 (701)
Q Consensus 448 g~~l~~gs~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~--I~iwd~~~~~~ 521 (701)
|+.|+..+.. +.|.+||+.+.....-..+. . ......+..+.|.+ ++.++++...++. |++|+..+...
T Consensus 297 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--~--~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~ 371 (710)
T 2xdw_A 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--P--EHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGAL 371 (710)
T ss_dssp TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--C--CCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCCcccceecc--C--CCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCE
Confidence 9988877653 35999999875310000111 1 11113577888886 6678888888875 56677643332
Q ss_pred eeecccCCCCeEEEEEecCCCEEEEE-e---CCCcEEEEeCCCCC
Q 005352 522 KYKGLRRSGNQLSACFTSDGKHIVSA-G---EDSNVYMWNCIGHE 562 (701)
Q Consensus 522 ~~~~~~~~~~v~~l~~s~dg~~l~sg-s---~Dg~I~iWd~~~~~ 562 (701)
......+...+..++++|++..|+.. + ..+.|++||+.+++
T Consensus 372 ~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 372 LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 22222246778889999999766533 2 45789999998876
No 177
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=6.6e-12 Score=130.47 Aligned_cols=266 Identities=8% Similarity=-0.041 Sum_probs=180.1
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCcee
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCI 298 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~ 298 (701)
++.++.|.++|........ ..+....-+........|.+. ++++.++...++.|.+||..+++.+.++
T Consensus 13 g~~~~~l~~~d~~t~~~~~-~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i---------- 80 (328)
T 3dsm_A 13 QYSNATLSYYDPATCEVEN-EVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI---------- 80 (328)
T ss_dssp TSCCBEEEEEETTTTEEEC-SHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE----------
T ss_pred CCCCceEEEEECCCCEEhh-hhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc----------
Confidence 4558899999976433211 111000001122446778874 4555666666899999999887644322
Q ss_pred EEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEE-CCCcE
Q 005352 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSAS-IDKTV 377 (701)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s-~dg~I 377 (701)
. .......+++++++.++.+. .++.|
T Consensus 81 ----------------------------------------------------~-~~~~p~~i~~~~~g~lyv~~~~~~~v 107 (328)
T 3dsm_A 81 ----------------------------------------------------T-GFTSPRYIHFLSDEKAYVTQIWDYRI 107 (328)
T ss_dssp ----------------------------------------------------E-CCSSEEEEEEEETTEEEEEEBSCSEE
T ss_pred ----------------------------------------------------C-CCCCCcEEEEeCCCeEEEEECCCCeE
Confidence 1 22456788998888555555 89999
Q ss_pred EEEECCCCeeeeeecCCC------CeEEEEEeeCCCCEEEEEE-cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCe
Q 005352 378 RLWRVGNDHCLRVFPHSN------YVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (701)
Q Consensus 378 ~iWd~~~~~~~~~~~h~~------~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~ 450 (701)
.+||..+++....+.... ....+++ . ++.++++.. .++.|.++|+.+++++..+........++++|+|+.
T Consensus 108 ~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l 185 (328)
T 3dsm_A 108 FIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKM 185 (328)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEE
T ss_pred EEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCE
Confidence 999999999887776443 6677887 3 555555544 488999999999988877666666788999999987
Q ss_pred EEEEecC----------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc
Q 005352 451 GIVGSMM----------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI 520 (701)
Q Consensus 451 l~~gs~d----------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~ 520 (701)
++++..+ +.|.++|..+.+..... .. ........++++| ++..++++.. .|.+||..+..
T Consensus 186 ~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~--~~-----~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 186 WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF--KF-----KLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE--EC-----CTTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSS
T ss_pred EEEECCCccCCccccCCceEEEEECCCCeEEEEE--ec-----CCCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCc
Confidence 6666554 78999999887654221 11 1123578999999 5666666654 89999987544
Q ss_pred eeeec-cc-CCCCeEEEEEec-CCCEEEEE----eCCCcEEEEeCCCCC
Q 005352 521 GKYKG-LR-RSGNQLSACFTS-DGKHIVSA----GEDSNVYMWNCIGHE 562 (701)
Q Consensus 521 ~~~~~-~~-~~~~v~~l~~s~-dg~~l~sg----s~Dg~I~iWd~~~~~ 562 (701)
..... .. .......++++| ++.++++. ..++.|.+|+.+ ++
T Consensus 256 ~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 256 VPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred eeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 32111 11 145788999999 55666666 578999999987 54
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.52 E-value=2.6e-12 Score=134.26 Aligned_cols=239 Identities=10% Similarity=0.051 Sum_probs=156.1
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC---Cc--EEEEEeecCeeeeeecCCCCCCc
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GV--VRLWQVVEDERLTEVDIPEIDPS 296 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~--I~iWd~~~~~~~~~~~~~~~~~~ 296 (701)
++.|.+|+...... ..+ ..+..++|||||++||.++.+ +. |.+|++.+++..
T Consensus 42 ~~~l~~~d~~~~~~--------~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~----------- 98 (347)
T 2gop_A 42 ENTIVIENLKNNAR--------RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK----------- 98 (347)
T ss_dssp EEEEEEEETTTCCE--------EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE-----------
T ss_pred cceEEEEeCCCCce--------EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE-----------
Confidence 56788887654321 112 457889999999999988764 34 666666554321
Q ss_pred eeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC--
Q 005352 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-- 373 (701)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~-- 373 (701)
.+..+.. +..++|+|++ .|+.++.
T Consensus 99 ----------------------------------------------------~l~~~~~-~~~~~wspdg~~l~~~~~~~ 125 (347)
T 2gop_A 99 ----------------------------------------------------KILEAKN-IRSLEWNEDSRKLLIVGFKR 125 (347)
T ss_dssp ----------------------------------------------------EEEEESE-EEEEEECTTSSEEEEEEECC
T ss_pred ----------------------------------------------------EEEcCCC-ccceeECCCCCEEEEEEccC
Confidence 1111223 8889999998 6666653
Q ss_pred -------------------------CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCC-------cEEE
Q 005352 374 -------------------------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG-------KVRI 421 (701)
Q Consensus 374 -------------------------dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg-------~v~i 421 (701)
...|.+||+.+++.+..+... .+..++|+| ++ +++++..++ ...|
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l 202 (347)
T 2gop_A 126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDI 202 (347)
T ss_dssp CC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEE
T ss_pred CCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCC-Ce-EEEEEecccccccccccccE
Confidence 257999999998873444333 788999999 88 777776542 3344
Q ss_pred EeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecC--------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeE-E
Q 005352 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM--------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG-F 492 (701)
Q Consensus 422 wd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~-l 492 (701)
|.+.+++...+..+ ..+..+ +|+|+.|+.++.+ ..|.+|| +++... ....+...+.. +
T Consensus 203 ~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~--------l~~~~~~~~~~~~ 269 (347)
T 2gop_A 203 YIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG--------ILDEVDRGVGQAK 269 (347)
T ss_dssp EEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE--------SSTTCCSEEEEEE
T ss_pred EEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEe--------ccccCCcccCCcc
Confidence 44436665555544 455544 9999999887754 3577777 333211 12223456775 8
Q ss_pred EEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcE-EEEeCC
Q 005352 493 QFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNV-YMWNCI 559 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I-~iWd~~ 559 (701)
.|+ ++ ++++++.++.++|| +.+.. ......+...|.+++|+| .++++++.++.. .||.++
T Consensus 270 ~~s--dg-~~~~~~~~~~~~l~-~~~g~-~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 270 IKD--GK-VYFTLFEEGSVNLY-IWDGE-IKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EET--TE-EEEEEEETTEEEEE-EESSS-EEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEc--Cc-EEEEEecCCcEEEE-EcCCc-eEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 887 45 88888999999999 76322 222233567889999999 677888777765 777765
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.51 E-value=2e-13 Score=145.22 Aligned_cols=192 Identities=10% Similarity=0.028 Sum_probs=130.4
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEE-------------------EEEeeCCCCEEEEE----
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC-------------------VHFNPVDDNYFISG---- 413 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~-------------------l~f~p~~~~~l~sg---- 413 (701)
.+.|+|++ +|+.++.++.|++||+.+++....+. +...... +.|+| +++.++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~ 163 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYH 163 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeecc
Confidence 36899999 89899999999999999887766655 3332222 23455 55555433
Q ss_pred -EcCCcEEEEeCCCCcEEEEecCCCcEEEEEEee-CCCeEEEEecC------CcEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 414 -SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMM------GDCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 414 -s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~gs~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
..+..|.+||+.+++......+...+..+.|+| +++.|+..+.+ ..|.+|++........ . ....
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~--~~~~ 236 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI-----K--EHAE 236 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEES-----S--CCCT
T ss_pred CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEe-----e--ccCC
Confidence 345689999999988877777778899999999 78877766543 3588888876542211 0 1111
Q ss_pred CCCeeEEEEecCCCCEEEEEECC-----CcEEEEeCCccceeeecccCCCCeEEEEEec-CCCEEEEEe-----------
Q 005352 486 CKRITGFQFLPQDSSKVMVSCAD-----SQVRILQGPNVIGKYKGLRRSGNQLSACFTS-DGKHIVSAG----------- 548 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~sgs----------- 548 (701)
...+..+.|+| +++.|+.++.+ +.|++||+.+........ .. ... +.|+| +|++|++++
T Consensus 237 ~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 237 GESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADAD 312 (396)
T ss_dssp TEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC--------
T ss_pred CccccceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeecccc
Confidence 23577889999 56666655443 449999987543322111 11 233 89999 999888765
Q ss_pred -----CCCcEEEEeCCCCC
Q 005352 549 -----EDSNVYMWNCIGHE 562 (701)
Q Consensus 549 -----~Dg~I~iWd~~~~~ 562 (701)
.++.|++||+.+++
T Consensus 313 ~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp --CCCCCCEEEEEETTTTB
T ss_pred ccccCCCCcEEEEecccCc
Confidence 34789999998765
No 180
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.49 E-value=5.6e-12 Score=126.62 Aligned_cols=239 Identities=11% Similarity=0.012 Sum_probs=167.3
Q ss_pred cEEEEEEccCCCEEE-EEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCc
Q 005352 252 SILTMKFSPDGQYLA-SAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (701)
Q Consensus 252 ~I~~l~fspdg~~La-sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (701)
...+|+++++|++++ +...++.|.+|+..+..... +
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~------------------------------------------ 61 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-L------------------------------------------ 61 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-C------------------------------------------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-E------------------------------------------
Confidence 678999999999777 54678899999865432100 0
Q ss_pred cEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCE
Q 005352 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~ 409 (701)
...+...+.++++.+++.|+.+..++.|.+||.......... .....+.++++.| ++++
T Consensus 62 -------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l 121 (270)
T 1rwi_B 62 -------------------PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAV 121 (270)
T ss_dssp -------------------CCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCE
T ss_pred -------------------eeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCE
Confidence 011223567889999884444444889999998765443222 2336789999999 8888
Q ss_pred EEEEEcCCcEEEEeCCCCcEEEEe-cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCC
Q 005352 410 FISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 488 (701)
+++...++.|.+|+..+....... .....+..++++|+|+.+++...++.|.+|+......... .......
T Consensus 122 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~ 193 (270)
T 1rwi_B 122 YVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--------PFTDITA 193 (270)
T ss_dssp EEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--------CCSSCCS
T ss_pred EEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee--------cccCCCC
Confidence 887777889999987655433221 2234678899999998777777788999999887653211 1112256
Q ss_pred eeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 489 i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+.++++.+ ++.++++...++.|.+|+............+...+.+++++++|+++++...++.|+++++...+
T Consensus 194 p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 194 PWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 88999998 56777777778999999987544333222234578999999999988898999999999987654
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.47 E-value=2.2e-11 Score=123.57 Aligned_cols=231 Identities=10% Similarity=0.098 Sum_probs=153.7
Q ss_pred CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEE-ccCCCEEEEEeC-CCcEEEEEeecCeeeeeec
Q 005352 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKF-SPDGQYLASAGD-DGVVRLWQVVEDERLTEVD 289 (701)
Q Consensus 212 ~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~f-spdg~~Lasgs~-Dg~I~iWd~~~~~~~~~~~ 289 (701)
++...++...++.|.+|+..... .........-.+|...+.++++ .+++.++++... ++.|.+|+ .+++.+..+.
T Consensus 40 ~g~l~v~~~~~~~i~~~d~~g~~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~ 116 (286)
T 1q7f_A 40 QNDIIVADTNNHRIQIFDKEGRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFG 116 (286)
T ss_dssp TCCEEEEEGGGTEEEEECTTSCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEEC
T ss_pred CCCEEEEECCCCEEEEECCCCcE--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEec
Confidence 33334445678899999865221 1111110011245567999999 577777666643 78999999 4443222111
Q ss_pred CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eE
Q 005352 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL 368 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l 368 (701)
..+...+.++++.+++ .+
T Consensus 117 -------------------------------------------------------------~~~~~~~~~i~~~~~g~l~ 135 (286)
T 1q7f_A 117 -------------------------------------------------------------ATILQHPRGVTVDNKGRII 135 (286)
T ss_dssp -------------------------------------------------------------TTTCSCEEEEEECTTSCEE
T ss_pred -------------------------------------------------------------CccCCCceEEEEeCCCCEE
Confidence 1233467899999998 66
Q ss_pred EEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC---CCcEEEE
Q 005352 369 LSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI---RQIVTAV 442 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~---~~~i~~i 442 (701)
++...++.|.+||.. ++.+..+. +...+.+++++| +++++++...++.|++||... +.+..+.. ...+..+
T Consensus 136 v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i 212 (286)
T 1q7f_A 136 VVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGV 212 (286)
T ss_dssp EEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEE
T ss_pred EEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEE
Confidence 666678899999964 55555553 445789999999 888888877889999999854 44433332 2578999
Q ss_pred EEeeCCCeEEEEecCC-cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 443 CYRPDGQGGIVGSMMG-DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 443 ~~sp~g~~l~~gs~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
+++|+|+.+++...++ .|.+|+...... .. +.. ......+.++++.| ++.++++ +.++.|++|+...
T Consensus 213 ~~d~~G~l~v~~~~~~~~i~~~~~~g~~~-~~--~~~----~~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 213 GINSNGEILIADNHNNFNLTIFTQDGQLI-SA--LES----KVKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EECTTCCEEEEECSSSCEEEEECTTSCEE-EE--EEE----SSCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSC
T ss_pred EECCCCCEEEEeCCCCEEEEEECCCCCEE-EE--Ecc----cCCCCcceeEEECC-CCcEEEE-CCCCeEEEEEccc
Confidence 9999998888887776 999999654322 11 111 11223477899999 5666555 6799999998754
No 182
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.46 E-value=3.6e-12 Score=134.31 Aligned_cols=242 Identities=9% Similarity=0.023 Sum_probs=157.0
Q ss_pred EEEEecCC-eEEEEE----------CCCcEEEEECCCCeeeeeec-------CCCCeEEEEEeeCCCCEEEEEEc--CCc
Q 005352 359 DLSWSKNN-YLLSAS----------IDKTVRLWRVGNDHCLRVFP-------HSNYVTCVHFNPVDDNYFISGSI--DGK 418 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s----------~dg~I~iWd~~~~~~~~~~~-------h~~~V~~l~f~p~~~~~l~sgs~--dg~ 418 (701)
.++|+|++ ++++++ .+++|.+||+.+.+.+..+. +......++|+| ++++|+++.. ++.
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATS 132 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCe
Confidence 78999999 777765 36789999999998888775 234577899999 9999988874 578
Q ss_pred EEEEeCCCCcEEEE-ecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCC-CeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 419 VRIWAVLSCHVVDW-VDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 419 v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
|.+||+.+++.+.. +..... ..+.+.|++ ..+++.+.||.+.+|++.. ++.... ............+ ..+.+.
T Consensus 133 v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~--~~~~~~~~~~~~~-~~~~~~ 208 (361)
T 2oiz_A 133 IGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ--SRSKQMFSVKDDP-IFIAPA 208 (361)
T ss_dssp EEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE--EECCCCSCTTTSC-BCSCCE
T ss_pred EEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee--ccccceEcCCCCc-eEEEec
Confidence 99999999988876 665443 335677765 6778888999999999865 332211 0000001111111 122335
Q ss_pred cCCCCEEEEEECCCcEEEEeCCcccee----eeccc----CC----CCeEEEEEecCCCEEEEEeC-----------CCc
Q 005352 496 PQDSSKVMVSCADSQVRILQGPNVIGK----YKGLR----RS----GNQLSACFTSDGKHIVSAGE-----------DSN 552 (701)
Q Consensus 496 p~~~~~l~~~s~dg~I~iwd~~~~~~~----~~~~~----~~----~~v~~l~~s~dg~~l~sgs~-----------Dg~ 552 (701)
+ ++..++..+.++.|.++|....... +.... .. .....++|+|++++++++.. .+.
T Consensus 209 ~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 209 L-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp E-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred c-cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence 5 4566677778899999998532211 11000 00 11123689999888877643 347
Q ss_pred EEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCC
Q 005352 553 VYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFP 632 (701)
Q Consensus 553 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d 632 (701)
|.+||+.+.+.. ..+ .... +..++++|+ ++.+++.+.
T Consensus 288 v~viD~~t~~~v--------~~i-----------------------------~~~~-p~~ia~spd----g~~l~v~n~- 324 (361)
T 2oiz_A 288 IWVMDTKTKQRV--------ARI-----------------------------PGRD-ALSMTIDQQ----RNLMLTLDG- 324 (361)
T ss_dssp EEEEETTTTEEE--------EEE-----------------------------ECTT-CCEEEEETT----TTEEEEECS-
T ss_pred EEEEECCCCcEE--------EEE-----------------------------ecCC-eeEEEECCC----CCEEEEeCC-
Confidence 999998876521 111 0011 556788887 556666555
Q ss_pred CcccCCCCccC--CCCccc
Q 005352 633 KGCATWPEEKL--PALSQL 649 (701)
Q Consensus 633 ~~~~~W~~~~~--~~~~~~ 649 (701)
+.+.+|+.+.+ ..+..+
T Consensus 325 ~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp SCEEEEECSSSSCEEEEEE
T ss_pred CeEEEEECCCCcceeeEEe
Confidence 89999998887 655553
No 183
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.44 E-value=7.2e-11 Score=121.23 Aligned_cols=248 Identities=12% Similarity=0.122 Sum_probs=167.0
Q ss_pred CCCcEEEEEEccCCCEEEE-------EeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 249 HDGSILTMKFSPDGQYLAS-------AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Las-------gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
.-....+++|+++|.++++ +..++.|.+||..+++... +..
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~------------------------------- 63 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICK------------------------------- 63 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EEC-------------------------------
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEe-------------------------------
Confidence 3445679999999988888 6778899999976654210 000
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC-CeEEEEECCCcEEEEECCCCeeeee-ec-----CC
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRV-FP-----HS 394 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~~l~s~s~dg~I~iWd~~~~~~~~~-~~-----h~ 394 (701)
....++...+.+++++++ +.|+.++..+.|.+||.. ++.... .. ..
T Consensus 64 --------------------------~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~ 116 (314)
T 1pjx_A 64 --------------------------PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRM 116 (314)
T ss_dssp --------------------------CEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBC
T ss_pred --------------------------cccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccc
Confidence 001124456889999999 766666656689999998 665443 22 12
Q ss_pred CCeEEEEEeeCCCCEEEEEEcC---------------CcEEEEeCCCCcEEEEecCCCcEEEEEEe----eCCCeEEEE-
Q 005352 395 NYVTCVHFNPVDDNYFISGSID---------------GKVRIWAVLSCHVVDWVDIRQIVTAVCYR----PDGQGGIVG- 454 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~d---------------g~v~iwd~~~~~~~~~~~~~~~i~~i~~s----p~g~~l~~g- 454 (701)
..+.++++.+ +++++++...+ +.|..||.. ++.............++++ |+++.++++
T Consensus 117 ~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~ 194 (314)
T 1pjx_A 117 QGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE 194 (314)
T ss_dssp BCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred cCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEE
Confidence 3588999999 88888776654 567778776 6555444444567889999 999766655
Q ss_pred ecCCcEEEEECC-CCeeeeeeeEEeecccCCCC-CCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCe
Q 005352 455 SMMGDCRFYNVS-DNHLELDAEICVHSKKKAPC-KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQ 532 (701)
Q Consensus 455 s~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~-~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v 532 (701)
..++.|.+|++. ++......... . ...+. ..+..+++.+ ++.++++...++.|.+||..+.........+...+
T Consensus 195 ~~~~~i~~~~~~~~g~~~~~~~~~--~-~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 270 (314)
T 1pjx_A 195 TPTKKLWSYDIKGPAKIENKKVWG--H-IPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKP 270 (314)
T ss_dssp TTTTEEEEEEEEETTEEEEEEEEE--E-CCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCE
T ss_pred CCCCeEEEEECCCCCccccceEEE--E-CCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCc
Confidence 567899999986 34322111111 1 11122 4577899998 67888777788999999987332222222244778
Q ss_pred EEEEEecCCCEE-EEEeCCCcEEEEeCCCC
Q 005352 533 LSACFTSDGKHI-VSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 533 ~~l~~s~dg~~l-~sgs~Dg~I~iWd~~~~ 561 (701)
.+++|+++|++| ++...++.|..|++...
T Consensus 271 ~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 271 SNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred eeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 999999999955 45556789999998753
No 184
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.44 E-value=9.3e-12 Score=129.40 Aligned_cols=248 Identities=11% Similarity=0.095 Sum_probs=169.3
Q ss_pred ccCeEEEEEecCC-eEEEEECC------------------------CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCC
Q 005352 354 SGEILDLSWSKNN-YLLSASID------------------------KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVD 406 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~d------------------------g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~ 406 (701)
-+.+.+|+++++| ++++...+ ++|.+||..+++.+..+. +-..+..++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 3679999999999 66666655 479999999998887775 345789999999 8
Q ss_pred CCEEEEEEcCCcEEEEeCCCCc-EEEEe----------cCCCcEEEEEEee-CCCeEEEEe-cCCcEEEEECCCCeeeee
Q 005352 407 DNYFISGSIDGKVRIWAVLSCH-VVDWV----------DIRQIVTAVCYRP-DGQGGIVGS-MMGDCRFYNVSDNHLELD 473 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~-~~~~~----------~~~~~i~~i~~sp-~g~~l~~gs-~dg~v~i~d~~~~~~~~~ 473 (701)
++++++...++.|++||..... .+..+ .+-..+..++++| ++..+++.+ .++.|++|+.. +.....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEE
Confidence 9988888889999999986552 23322 2233689999999 787777776 68999999954 333221
Q ss_pred eeEEeeccc----CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc--ceeeecccCCCCeEEEEEecCCCEEEEE
Q 005352 474 AEICVHSKK----KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--IGKYKGLRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 474 ~~~~~~~~~----~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~l~~s~dg~~l~sg 547 (701)
.. ..... ..+.....++++.|+.+.++++...++.|++|+..+. ...+....+...+..++|+| +..+++.
T Consensus 181 ~~--~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~ 257 (329)
T 3fvz_A 181 WG--EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVN 257 (329)
T ss_dssp EC--EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEE
T ss_pred ec--cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeC
Confidence 11 11100 1223457899999954778888888999999998633 33333334567788999999 4333333
Q ss_pred -------eCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCcc
Q 005352 548 -------GEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARF 620 (701)
Q Consensus 548 -------s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~ 620 (701)
..+..|++|++.+++... .+. .. ......+..++++|+
T Consensus 258 g~~~v~~~~~~~v~~~~~~~g~~~~--------~~~-------------~~------------~~~~~~p~~ia~~~d-- 302 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNFSSGEIID--------VFK-------------PV------------RKHFDMPHDIVASED-- 302 (329)
T ss_dssp CCCCTTCSCCCCEEEEETTTCCEEE--------EEC-------------CS------------SSCCSSEEEEEECTT--
T ss_pred CCEEeccCCCcEEEEEEcCCCeEEE--------EEc-------------CC------------CCccCCeeEEEECCC--
Confidence 345589999988775210 000 00 001123456778886
Q ss_pred ccCccccccCCCCcccCCCCccC
Q 005352 621 SLGQEYVFESFPKGCATWPEEKL 643 (701)
Q Consensus 621 ~~~~~~~~~s~d~~~~~W~~~~~ 643 (701)
+..+++...++.|+.|+.+..
T Consensus 303 --G~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 303 --GTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp --SEEEEEESSSCCEEEEEEEEC
T ss_pred --CCEEEEECCCCEEEEEeCCcc
Confidence 677888888888988886543
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.43 E-value=1e-11 Score=129.02 Aligned_cols=200 Identities=12% Similarity=0.130 Sum_probs=141.4
Q ss_pred EEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCEEEEEEcC----CcEEEE
Q 005352 349 EFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSID----GKVRIW 422 (701)
Q Consensus 349 ~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~d----g~v~iw 422 (701)
.+..+...+.+++|++++ +++++..++.|.+||..+++..... .+...+.+++++| +++++++...+ +.|.+|
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~ 117 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAA 117 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEE
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEE
Confidence 344556677899999999 6667788899999999988776654 4667899999999 88888877666 689999
Q ss_pred eCCCCcEEEEe---cCCCcEEEEEEeeCCCeEEEEec------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEE
Q 005352 423 AVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 423 d~~~~~~~~~~---~~~~~i~~i~~sp~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 493 (701)
|..++...... .....+..++++|+|+.+++... .+.|..|+..+.+..... . ....+.+++
T Consensus 118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~------~~~~~~~i~ 188 (333)
T 2dg1_A 118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII---Q------NISVANGIA 188 (333)
T ss_dssp CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE---E------EESSEEEEE
T ss_pred eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee---c------CCCcccceE
Confidence 99887765332 23456899999999987776553 355666666554432110 0 113468899
Q ss_pred EecCCCCEE-EEEECCCcEEEEeCCcc---ceee-----ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 494 FLPQDSSKV-MVSCADSQVRILQGPNV---IGKY-----KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 494 ~~p~~~~~l-~~~s~dg~I~iwd~~~~---~~~~-----~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
|+| ++..+ ++...++.|.+||.... ...+ ........+..++++++|+++++...++.|.+|+.+
T Consensus 189 ~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 189 LST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp ECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ECC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 999 56644 55556889999998531 1111 111112467889999999988888888999999974
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.41 E-value=3.5e-11 Score=125.65 Aligned_cols=183 Identities=9% Similarity=-0.002 Sum_probs=125.4
Q ss_pred cCeEEEEEecCC-eEEEEECC---C--cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC------------
Q 005352 355 GEILDLSWSKNN-YLLSASID---K--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID------------ 416 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~d---g--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d------------ 416 (701)
..+..++|+|+| +|+.++.+ + .|.+|++.+++......+.. +..++|+| +++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 357789999999 77766653 3 38888999888777666555 99999999 99988887642
Q ss_pred ---------------CcEEEEeCCCCcE-EEEecCCCcEEEEEEeeCCCeEEEEecCC-------cEEEEECCCCeeeee
Q 005352 417 ---------------GKVRIWAVLSCHV-VDWVDIRQIVTAVCYRPDGQGGIVGSMMG-------DCRFYNVSDNHLELD 473 (701)
Q Consensus 417 ---------------g~v~iwd~~~~~~-~~~~~~~~~i~~i~~sp~g~~l~~gs~dg-------~v~i~d~~~~~~~~~ 473 (701)
..|.+||+.+++. ..+.. . .+..++|+|+| .++++..++ ...+|.+.+++...
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~- 212 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEK- 212 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEE-
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEE-
Confidence 5699999998877 44333 3 78899999999 777775542 34454444443321
Q ss_pred eeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC--------CcEEEEeCCccceeeecccCCCCeEE-EEEecCCCEE
Q 005352 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD--------SQVRILQGPNVIGKYKGLRRSGNQLS-ACFTSDGKHI 544 (701)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d--------g~I~iwd~~~~~~~~~~~~~~~~v~~-l~~s~dg~~l 544 (701)
+. . + ..+..+ +| +++.|+.++.+ ..|.+|| . .........+...+.. +.|+ ++ ++
T Consensus 213 --l~--~----~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d-~-~~~~~l~~~~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 213 --MF--E----K-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD-G-KEVMGILDEVDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp --EE--E----E-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC-S-SCEEESSTTCCSEEEEEEEET-TE-EE
T ss_pred --ec--c----C-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC-C-CceEeccccCCcccCCccEEc-Cc-EE
Confidence 11 1 1 223333 88 67777766643 4688888 2 2222222234567776 8999 88 99
Q ss_pred EEEeCCCcEEEEeCCC
Q 005352 545 VSAGEDSNVYMWNCIG 560 (701)
Q Consensus 545 ~sgs~Dg~I~iWd~~~ 560 (701)
++++.++.++|| +.+
T Consensus 277 ~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWD 291 (347)
T ss_dssp EEEEETTEEEEE-EES
T ss_pred EEEecCCcEEEE-EcC
Confidence 999999999999 874
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.39 E-value=6.1e-10 Score=113.09 Aligned_cols=236 Identities=6% Similarity=0.030 Sum_probs=167.1
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
.+...+.+|+++++|.++++...++.|.+||.. ++. ..+.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~-------------------------------------- 51 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYP-------------------------------------- 51 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEE--------------------------------------
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEec--------------------------------------
Confidence 456789999999999988777667899999876 321 1110
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEe
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFN 403 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~ 403 (701)
+..+...+.++++.+++ .+++...++.|..||.. ++. ..+. ....+.++++.
T Consensus 52 ----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~ 107 (299)
T 2z2n_A 52 ----------------------LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEG 107 (299)
T ss_dssp ----------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEEC
T ss_pred ----------------------CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEEC
Confidence 01123568889999988 55555557889999986 332 2222 45578999999
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCCCcEEEEe--cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 404 p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
| ++.++++...++.|.+||. +++..... .....+..+++.++|+.+++...++.|..||. +++... +.
T Consensus 108 ~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~---- 177 (299)
T 2z2n_A 108 P-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE---FK---- 177 (299)
T ss_dssp T-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EE----
T ss_pred C-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---ee----
Confidence 8 8888887777889999998 55554332 23456899999999987777777789999998 554321 11
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.......+.++++.+ ++.++++...++.|.+||.......+....+...+.+++++++|+++++...++.|..|+.
T Consensus 178 ~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 178 IPTPASGPVGITKGN-DDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp CSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCCCCCcceeEEECC-CCCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 112235678899998 5676666666889999998433233333334567899999999997777767889999997
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.38 E-value=4.4e-10 Score=124.77 Aligned_cols=272 Identities=10% Similarity=0.044 Sum_probs=179.5
Q ss_pred ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEee--cCeeeeeecCCC
Q 005352 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV--EDERLTEVDIPE 292 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~--~~~~~~~~~~~~ 292 (701)
.+++...++.|.|+|...... . ..+. ....+..+.|+|||++|++++.|+.|.+||+. +.+.+.+
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v-~------~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~----- 235 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEI-K------TVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE----- 235 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCE-E------EEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE-----
T ss_pred EEEEeCCCCeEEEEECCCCeE-E------EEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE-----
Confidence 344566789999998754321 1 1122 22356789999999999999999999999985 4432221
Q ss_pred CCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe----cCC-e
Q 005352 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS----KNN-Y 367 (701)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s----~~~-~ 367 (701)
+... .....++|+ |+| +
T Consensus 236 ---------------------------------------------------------i~~G-~~P~~ia~s~~~~pDGk~ 257 (567)
T 1qks_A 236 ---------------------------------------------------------IKIG-SEARSIETSKMEGWEDKY 257 (567)
T ss_dssp ---------------------------------------------------------EECC-SEEEEEEECCSTTCTTTE
T ss_pred ---------------------------------------------------------EecC-CCCceeEEccccCCCCCE
Confidence 2211 234688999 688 5
Q ss_pred EEEE-ECCCcEEEEECCCCeeeeeecC------------CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--EE
Q 005352 368 LLSA-SIDKTVRLWRVGNDHCLRVFPH------------SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DW 432 (701)
Q Consensus 368 l~s~-s~dg~I~iWd~~~~~~~~~~~h------------~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~ 432 (701)
++++ ..+++|.++|..+.+.+..+.. ...+..+.+++....+++.....|.|.++|....... ..
T Consensus 258 l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~ 337 (567)
T 1qks_A 258 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE 337 (567)
T ss_dssp EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee
Confidence 5555 4569999999999998887652 1267888888833445555556799999999876433 33
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCc
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQ 510 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~ 510 (701)
+........+.|+|+|++++++. .++.|.++|+.++++.... ..- ....|...-..+ +.|+.+..++++. .++.
T Consensus 338 i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i--~vg-g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~ 413 (567)
T 1qks_A 338 ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE--DTG-GQTPHPGRGANF-VHPTFGPVWATSHMGDDS 413 (567)
T ss_dssp EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE--ECS-SSSBCCTTCEEE-EETTTEEEEEEEBSSSSE
T ss_pred eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE--ecc-CcCCCCccceee-ECCCCCcEEEeCCCCCCe
Confidence 44556678899999999988766 5789999999998764322 110 122332222222 5674344444443 4689
Q ss_pred EEEEeCCc-------cceeeecccCCCCeEEEEEecCCCEEEEEeC-------CCcEEEEeCCCC
Q 005352 511 VRILQGPN-------VIGKYKGLRRSGNQLSACFTSDGKHIVSAGE-------DSNVYMWNCIGH 561 (701)
Q Consensus 511 I~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~-------Dg~I~iWd~~~~ 561 (701)
|.++|... .............-..+..+|++++|.+... ...|.++|+.+.
T Consensus 414 Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 414 VALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 99999875 2222222112223345778999999988763 359999999876
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.38 E-value=8.1e-10 Score=112.20 Aligned_cols=274 Identities=8% Similarity=0.097 Sum_probs=179.3
Q ss_pred ceeeecCcc-cccccc-ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCe
Q 005352 206 GERVRLNEE-DAMFCS-KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (701)
Q Consensus 206 ~~~~~~~~~-~~~~~~-~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~ 283 (701)
...+..+.+ .+.++. .++.|.+|+.. .. +... .+..+...+.+|+++++|.++++...++.|..|+.. ++
T Consensus 17 ~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~--~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 17 PYGITVSDKGKVWITQHKANMISCINLD-GK--ITEY----PLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-CC--EEEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ccceEECCCCCEEEEecCCCcEEEEcCC-CC--eEEe----cCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 344444433 333333 36788888755 21 1111 112245679999999999988887778889888864 22
Q ss_pred eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe
Q 005352 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (701)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 363 (701)
...+. +..+...+..+++.
T Consensus 89 -~~~~~------------------------------------------------------------~~~~~~~~~~i~~~ 107 (299)
T 2z2n_A 89 -IKEYT------------------------------------------------------------LPNPDSAPYGITEG 107 (299)
T ss_dssp -EEEEE------------------------------------------------------------CSSTTCCEEEEEEC
T ss_pred -EEEEe------------------------------------------------------------CCCcCCCceeeEEC
Confidence 11110 01123467889999
Q ss_pred cCC-eEEEEECCCcEEEEECCCCeeeeee-c-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe--cCCCc
Q 005352 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVF-P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQI 438 (701)
Q Consensus 364 ~~~-~l~s~s~dg~I~iWd~~~~~~~~~~-~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~ 438 (701)
+++ .+++...++.|.+||. +++..... . ....+.++++.+ +++++++...++.|..||. +++..... .....
T Consensus 108 ~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 184 (299)
T 2z2n_A 108 PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASG 184 (299)
T ss_dssp TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCc
Confidence 988 5555556789999998 55443322 2 446789999998 8888777766789999999 66655432 23456
Q ss_pred EEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
+..++++++|+.+++...++.|..|+. ++.... +. .......+.++++.+ ++.++++...++.|.+||...
T Consensus 185 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~----~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g 255 (299)
T 2z2n_A 185 PVGITKGNDDALWFVEIIGNKIGRITT-SGEITE---FK----IPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTSNN 255 (299)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE----CSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEETTT
T ss_pred ceeEEECCCCCEEEEccCCceEEEECC-CCcEEE---EE----CCCCCCCceeEEECC-CCCEEEeccCCceEEEECCCC
Confidence 889999999987666666889999998 554321 11 112345688999998 566666555789999999854
Q ss_pred cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 519 VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 519 ~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
....+....+...+.++++ ++|.++++.. .+.|..++.++.+
T Consensus 256 ~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 256 IIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred ceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 3333333334567899999 8888777665 5677778776543
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.38 E-value=7.5e-11 Score=119.05 Aligned_cols=210 Identities=10% Similarity=-0.034 Sum_probs=155.3
Q ss_pred CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccc
Q 005352 261 DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVF 340 (701)
Q Consensus 261 dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (701)
.+++|++++.|+.|.+||..+++.+.++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--------------------------------------------------- 32 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP--------------------------------------------------- 32 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE---------------------------------------------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC---------------------------------------------------
Confidence 35789999999999999998887554432
Q ss_pred cccCCCeEEEcCCc-cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecC--CCCeEEEEEeeCCCCEEEEEEc-
Q 005352 341 RILEKPLHEFHGHS-GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPH--SNYVTCVHFNPVDDNYFISGSI- 415 (701)
Q Consensus 341 ~~~~~~~~~~~~h~-~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h--~~~V~~l~f~p~~~~~l~sgs~- 415 (701)
.+. ..+.++.+.|+| +|+ +.++.|..||. +++.+..+.. ...+.++.+.| +++++++.+.
T Consensus 33 -----------~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~ 97 (276)
T 3no2_A 33 -----------LEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP-DGNALVAWCGH 97 (276)
T ss_dssp -----------CCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT-TSCEEEEEEST
T ss_pred -----------CCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC-CCCEEEEecCC
Confidence 222 356788899999 555 56788999999 8998888874 35788999999 9999999887
Q ss_pred CCcEEEEeCCCCcEEEEecC-------CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCC
Q 005352 416 DGKVRIWAVLSCHVVDWVDI-------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (701)
Q Consensus 416 dg~v~iwd~~~~~~~~~~~~-------~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 488 (701)
++.|..+|. +++.+..... ......+++.++|+++++...++.|..||.. ++........ ..
T Consensus 98 ~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~---------~~ 166 (276)
T 3no2_A 98 PSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS---------GT 166 (276)
T ss_dssp TEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS---------SC
T ss_pred CCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC---------CC
Confidence 778888886 5665533321 1234556788999999999999999999998 6655432211 23
Q ss_pred eeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccC------CCCeEEEEEecCCCEEEEEe
Q 005352 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRR------SGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 489 i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~------~~~v~~l~~s~dg~~l~sgs 548 (701)
..++...+ ++++++++..++.|..+|..+.....+...+ ...+..++..++|.++++..
T Consensus 167 ~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 167 PFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred ccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 45567777 6888888888889999998865554443221 23378888899999888874
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.38 E-value=4.2e-11 Score=124.33 Aligned_cols=242 Identities=7% Similarity=0.023 Sum_probs=163.8
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 435 (701)
....+.+..+..+++...++.|.+||..+++.+..+.....+..+++++ ++.++++...++.|.+||..++++......
T Consensus 45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp CEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred cceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence 4566777543355666678999999999999999888777899999998 775555544789999999999988765554
Q ss_pred CC------cEEEEEEeeCCCeEEEEe--cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 436 RQ------IVTAVCYRPDGQGGIVGS--MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 436 ~~------~i~~i~~sp~g~~l~~gs--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
.. ....+++ . +..++++. .++.|.++|+.+++....... ......+.+.| ++.+++++..
T Consensus 124 g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~---------g~~p~~i~~~~-dG~l~v~~~~ 191 (328)
T 3dsm_A 124 PDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTI---------GIQPTSLVMDK-YNKMWTITDG 191 (328)
T ss_dssp TTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEEC---------SSCBCCCEECT-TSEEEEEBCC
T ss_pred CCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc---------CCCccceEEcC-CCCEEEEECC
Confidence 44 5667777 3 45555555 488999999998876433211 12345788888 5666666554
Q ss_pred C----------CcEEEEeCCccceeeecc-cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccc
Q 005352 508 D----------SQVRILQGPNVIGKYKGL-RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE 576 (701)
Q Consensus 508 d----------g~I~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 576 (701)
+ +.|.++|..+........ ........++|+|++++|+++.. .|++||..+++.....
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~--------- 260 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP--------- 260 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC---------
T ss_pred CccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee---------
Confidence 4 789999987544332221 12346899999999999988765 8999999877621000
Q ss_pred cccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcccccc----CCCCcccCCCCccCCCCcccc
Q 005352 577 RFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFE----SFPKGCATWPEEKLPALSQLS 650 (701)
Q Consensus 577 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~----s~d~~~~~W~~~~~~~~~~~~ 650 (701)
... .....+..++++|+ .+..+++. ..++.+.+|+.+ ...+..+.
T Consensus 261 ~~~-------------------------~~~~~p~gi~vdp~---~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 261 FLE-------------------------FRDTKYYGLTVNPN---NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp SBC-------------------------CCSSCEEEEEECTT---TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred eec-------------------------CCCCceEEEEEcCC---CCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 000 00122344667774 25556665 567888899887 66566553
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.37 E-value=4.6e-11 Score=138.48 Aligned_cols=240 Identities=15% Similarity=0.116 Sum_probs=155.7
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCC-----CcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDD-----GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~D-----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+|...+..++|||||++||.+..+ ..|++||+.+++.+..
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----------------------------------- 204 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----------------------------------- 204 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-----------------------------------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-----------------------------------
Confidence 355578999999999999987654 4699999988763210
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCc--------------EEEEECCCCee-
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKT--------------VRLWRVGNDHC- 387 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~--------------I~iWd~~~~~~- 387 (701)
..+...+..++|+|+..|+.++.++. |++|++.++..
T Consensus 205 ----------------------------~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~ 256 (741)
T 1yr2_A 205 ----------------------------ELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA 256 (741)
T ss_dssp ----------------------------EEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGG
T ss_pred ----------------------------cCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchh
Confidence 00111124678888875555555543 89999987752
Q ss_pred -eeeec---CCCCeEEEEEeeCCCCEEEEEEcCC-----cEEEEeCCCC--c-EEEEecCCCcEEEEEEeeCCCeEEEEe
Q 005352 388 -LRVFP---HSNYVTCVHFNPVDDNYFISGSIDG-----KVRIWAVLSC--H-VVDWVDIRQIVTAVCYRPDGQGGIVGS 455 (701)
Q Consensus 388 -~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg-----~v~iwd~~~~--~-~~~~~~~~~~i~~i~~sp~g~~l~~gs 455 (701)
...+. +...+..+.|+| ++++|+..+.++ .|++||+.++ + ...+..+...+... +.|+|+.|+..+
T Consensus 257 ~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s 334 (741)
T 1yr2_A 257 DQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVS 334 (741)
T ss_dssp CEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEE
T ss_pred CEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEE
Confidence 22333 334688999999 999888877554 7999999877 5 55555555555544 348999888877
Q ss_pred cC----CcEEEEECCCCe--eeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC-ccceeeec-cc
Q 005352 456 MM----GDCRFYNVSDNH--LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-NVIGKYKG-LR 527 (701)
Q Consensus 456 ~d----g~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~-~~~~~~~~-~~ 527 (701)
.+ +.|.+||+.+.. ... + . ..+...+..+.+. ++.++++...|+..+||... +....... ..
T Consensus 335 ~~~~~~~~l~~~d~~~~~~~~~~---l-~----~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~ 404 (741)
T 1yr2_A 335 GDGAPLKKIVRVDLSGSTPRFDT---V-V----PESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP 404 (741)
T ss_dssp CTTCTTCEEEEEECSSSSCEEEE---E-E----CCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCS
T ss_pred CCCCCCCEEEEEeCCCCccccEE---E-e----cCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCC
Confidence 63 459999987742 111 1 1 1122346667776 45778888888887776443 11111111 11
Q ss_pred CCCCeEEEEEecCCCEEE-EE---eCCCcEEEEeCCCCC
Q 005352 528 RSGNQLSACFTSDGKHIV-SA---GEDSNVYMWNCIGHE 562 (701)
Q Consensus 528 ~~~~v~~l~~s~dg~~l~-sg---s~Dg~I~iWd~~~~~ 562 (701)
....+..++++|+++.|+ +. ...+.|++||+.+++
T Consensus 405 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 405 GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 356788899999987665 22 345789999998765
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.35 E-value=1.8e-09 Score=113.92 Aligned_cols=269 Identities=12% Similarity=0.018 Sum_probs=173.9
Q ss_pred eEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEeecCeeeeeecCCCC
Q 005352 224 RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 224 ~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
.|.++|...... . ..+.....+ .++|+|||++|+.+. .++.|.+||..+.+.+..+.....
T Consensus 48 ~v~v~D~~t~~~--~-----~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~ 118 (373)
T 2mad_H 48 QQWVLDAGSGSI--L-----GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA 118 (373)
T ss_pred EEEEEECCCCeE--E-----EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCc
Confidence 788888754321 1 233333444 899999999998885 367899999987765544432100
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s 372 (701)
.. +. +...-..+.|+|+| +|+.++
T Consensus 119 -----------------------------------------------------~~-~~-~g~~p~~~~~spDG~~l~v~n 143 (373)
T 2mad_H 119 -----------------------------------------------------PR-FD-VGPYSWMNANTPNNADLLFFQ 143 (373)
T ss_pred -----------------------------------------------------cc-cc-cCCCccceEECCCCCEEEEEe
Confidence 00 00 01223478999999 777776
Q ss_pred C--CCcEEEEECCCCeeeee-ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec------CCCc-EEEE
Q 005352 373 I--DKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD------IRQI-VTAV 442 (701)
Q Consensus 373 ~--dg~I~iWd~~~~~~~~~-~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~------~~~~-i~~i 442 (701)
. ++.|.++| .+++.+.. +..... +.+.|.....+++.+.||.+.++|. +++...... ...+ ....
T Consensus 144 ~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~ 218 (373)
T 2mad_H 144 FAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQP 218 (373)
T ss_pred cCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecc
Confidence 4 57899999 99998888 765443 4555635567778888999999999 877663221 1122 2335
Q ss_pred EEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc----cCCCCCCeeEEEEecCCCCEEEEEEC----------C
Q 005352 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----KKAPCKRITGFQFLPQDSSKVMVSCA----------D 508 (701)
Q Consensus 443 ~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~~p~~~~~l~~~s~----------d 508 (701)
.+.+++..++..+..+.+.+.|+..........+..... ..........+.++| ++..++++.. .
T Consensus 219 ~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~~~~~~~~~~~~~~ 297 (373)
T 2mad_H 219 AQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAA 297 (373)
T ss_pred eeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-CCCEEEEEeccCCcccccCCC
Confidence 667777666665678899999997654332222221110 001112234477888 5565555443 3
Q ss_pred CcEEEEeCCccceeeecccCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCCC
Q 005352 509 SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK-HIVSAG-EDSNVYMWNCIGHEE 563 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~sgs-~Dg~I~iWd~~~~~~ 563 (701)
+.|.++|..+....-... .......++|+|||+ +++++. .++.|.+||..+++.
T Consensus 298 ~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 298 KEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 579999998655443332 334688999999999 788877 589999999998873
No 194
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.33 E-value=1.7e-09 Score=120.10 Aligned_cols=230 Identities=13% Similarity=0.041 Sum_probs=160.8
Q ss_pred cCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCcc
Q 005352 260 PDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKV 339 (701)
Q Consensus 260 pdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (701)
|.+.++++...++.|.++|..+++.+..+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~-------------------------------------------------- 194 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD-------------------------------------------------- 194 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEE--------------------------------------------------
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEe--------------------------------------------------
Confidence 455677788889999999998876544332
Q ss_pred ccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECC--CCeeeeeecCCCCeEEEEEe----eCCCCEEEE
Q 005352 340 FRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG--NDHCLRVFPHSNYVTCVHFN----PVDDNYFIS 412 (701)
Q Consensus 340 ~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~--~~~~~~~~~h~~~V~~l~f~----p~~~~~l~s 412 (701)
....+..+.++|++ ++++++.|+.|.+||+. +.+.+..+........++|+ | +++++++
T Consensus 195 -------------~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~p-DGk~l~v 260 (567)
T 1qks_A 195 -------------TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIA 260 (567)
T ss_dssp -------------CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEE
T ss_pred -------------CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCC-CCCEEEE
Confidence 11245588999999 88889999999999996 88888888766678899999 7 8887776
Q ss_pred EE-cCCcEEEEeCCCCcEEEEecCC------------CcEEEEEEeeCCCeEEEE-ecCCcEEEEECCCCeeeeeeeEEe
Q 005352 413 GS-IDGKVRIWAVLSCHVVDWVDIR------------QIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICV 478 (701)
Q Consensus 413 gs-~dg~v~iwd~~~~~~~~~~~~~------------~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~~~~~~~~~~~~ 478 (701)
+. .++.|.++|..+.+.+..+... ..+..+..++++..+++. ...|.|.++|..+........+
T Consensus 261 ~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-- 338 (567)
T 1qks_A 261 GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-- 338 (567)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--
T ss_pred EEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee--
Confidence 65 4589999999998887654321 257788888887655544 5569999999987543221111
Q ss_pred ecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCccceeeecc-----cCCCCeEEEEEecCCCEE-EEEe-CC
Q 005352 479 HSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVIGKYKGL-----RRSGNQLSACFTSDGKHI-VSAG-ED 550 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~~~~~~~~-----~~~~~v~~l~~s~dg~~l-~sgs-~D 550 (701)
.......++.|+| ++.+++++. .++.|.++|..+........ .|.+.-..+ ++|++..+ +++. .+
T Consensus 339 -----~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~ 411 (567)
T 1qks_A 339 -----SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGD 411 (567)
T ss_dssp -----ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSS
T ss_pred -----eccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCC
Confidence 1123466789999 566666555 58999999998654332211 132222222 68875444 4553 46
Q ss_pred CcEEEEeCCCCC
Q 005352 551 SNVYMWNCIGHE 562 (701)
Q Consensus 551 g~I~iWd~~~~~ 562 (701)
+.|.+++..+.+
T Consensus 412 ~~Vsvid~~~~~ 423 (567)
T 1qks_A 412 DSVALIGTDPEG 423 (567)
T ss_dssp SEEEEEECCTTT
T ss_pred CeEEEecCCCCC
Confidence 899999988754
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.29 E-value=1.4e-10 Score=133.54 Aligned_cols=195 Identities=10% Similarity=-0.004 Sum_probs=130.5
Q ss_pred CCccCeEEEEEecCC-eEE-----EEECCCcEEEEECCCCeee-eeecCCCCeEEEEEeeCCCCEEEEEEcCCc------
Q 005352 352 GHSGEILDLSWSKNN-YLL-----SASIDKTVRLWRVGNDHCL-RVFPHSNYVTCVHFNPVDDNYFISGSIDGK------ 418 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-~l~-----s~s~dg~I~iWd~~~~~~~-~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~------ 418 (701)
+|...+..++|||+| +|+ .|+.+.+|++||+.+++.+ ...........++|+| +++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 466678999999999 666 2333468999999999875 2111111226899999 9999999988776
Q ss_pred -------EEEEeCCCCcE--EEEe---cCCCcEEEEEEeeCCCeEEEEecCC----cEEEEECCCCeeeeeeeEEeeccc
Q 005352 419 -------VRIWAVLSCHV--VDWV---DIRQIVTAVCYRPDGQGGIVGSMMG----DCRFYNVSDNHLELDAEICVHSKK 482 (701)
Q Consensus 419 -------v~iwd~~~~~~--~~~~---~~~~~i~~i~~sp~g~~l~~gs~dg----~v~i~d~~~~~~~~~~~~~~~~~~ 482 (701)
|++|++.+++. .... .+...+..+.|+|+|++|+.++.++ .|.+++..++.... +..
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-----l~~-- 269 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-----LVK-- 269 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-----EEE--
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-----eec--
Confidence 99999988762 1122 2345788999999999999887766 56677654443221 111
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEE---CCCcEEEEeCCccc----eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 005352 483 KAPCKRITGFQFLPQDSSKVMVSC---ADSQVRILQGPNVI----GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYM 555 (701)
Q Consensus 483 ~~~~~~i~~l~~~p~~~~~l~~~s---~dg~I~iwd~~~~~----~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i 555 (701)
+...+....+ + ++.+++.+. .++.|.+||+.+.. ..+........+..++|+ ++.++++...|+..+|
T Consensus 270 --~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 270 --GVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEV 344 (695)
T ss_dssp --CSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred --CCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 1123444455 5 344444443 25889999987543 223222224567888888 7778889999999888
Q ss_pred EeCC
Q 005352 556 WNCI 559 (701)
Q Consensus 556 Wd~~ 559 (701)
|.++
T Consensus 345 ~~~~ 348 (695)
T 2bkl_A 345 RVAT 348 (695)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8765
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.28 E-value=3e-10 Score=113.83 Aligned_cols=195 Identities=8% Similarity=-0.029 Sum_probs=136.7
Q ss_pred CeEEEEEecCC-eEE-EEECCCcEEEEECCCCeeeee-ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 356 EILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~-s~s~dg~I~iWd~~~~~~~~~-~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
...++++.+++ .++ +...++.|.+||..+...... ..+...+.++++.+ +++++++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 67889999998 445 436788999999766543322 12335688999998 888666655 88999999887655433
Q ss_pred e-cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 433 V-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 433 ~-~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
. .....+..++++|+|+.+++...++.|.+|+..+...... .......+.++++.+ ++.++++...++.|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--------PFTGLNDPDGVAVDN-SGNVYVTDTDNNRV 173 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--------CCCSCCSCCCEEECT-TCCEEEEEGGGTEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--------ccccCCCceeEEEeC-CCCEEEEECCCCEE
Confidence 2 2235789999999998777777788999997654432110 111224577899998 56777776778899
Q ss_pred EEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 512 RILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.+||............+...+..++++++|.++++...++.|++|+..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 174 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred EEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 99998754443332233467899999999988888778899999997654
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.27 E-value=2.3e-10 Score=116.64 Aligned_cols=238 Identities=11% Similarity=0.044 Sum_probs=154.0
Q ss_pred CCCCeEEEEEeeCCCC-EEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee
Q 005352 393 HSNYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
+.....+++|+| +++ +++++..++.|..||..++ ...+......+.+++++|+|+.+++...++.|.+||..+++..
T Consensus 26 ~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 26 GFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred CCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 456688999999 887 7888888999999999988 5555566778999999999998777777789999999776643
Q ss_pred eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE----E-------------CCCcEEEEeCCccceeeecccCCCCeEE
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS----C-------------ADSQVRILQGPNVIGKYKGLRRSGNQLS 534 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~----s-------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~ 534 (701)
.... .........+..+++.| ++.++++. + ..+.|..++.......+ ..+......
T Consensus 104 ~~~~----~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~--~~~~~~~~g 176 (296)
T 3e5z_A 104 SIAD----SFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAP--IRDRVKPNG 176 (296)
T ss_dssp EEEC----EETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEE--ECCCSSEEE
T ss_pred EEee----ccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEe--ecCCCCCcc
Confidence 2111 10111224567899999 67777763 2 13467777765222222 235567789
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCC-CCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCcc
Q 005352 535 ACFTSDGKHIVSAGEDSNVYMWNCI-GHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENL 613 (701)
Q Consensus 535 l~~s~dg~~l~sgs~Dg~I~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 613 (701)
++|+|+|++|++.+.++.|++|++. ++.. . .....+ . .....+..+
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~-~-------~~~~~~----------~---------------~~~~~p~~i 223 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGET-E-------YQGVHF----------T---------------VEPGKTDGL 223 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCE-E-------EEEEEE----------C---------------CSSSCCCSE
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcC-c-------CCCeEe----------e---------------CCCCCCCeE
Confidence 9999999999888888999999987 2220 0 000000 0 001123346
Q ss_pred ccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeE
Q 005352 614 AFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRS 691 (701)
Q Consensus 614 ~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irv 691 (701)
+++++ +..+++. ++++.+|+.+ ...+..+..+ .. +.++++..+.+..|+.++.+|..|+
T Consensus 224 ~~d~~----G~l~v~~--~~~v~~~~~~-g~~~~~~~~~-----------~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 224 RVDAG----GLIWASA--GDGVHVLTPD-GDELGRVLTP-----------QT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EEBTT----SCEEEEE--TTEEEEECTT-SCEEEEEECS-----------SC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EECCC----CCEEEEc--CCeEEEECCC-CCEEEEEECC-----------CC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 66775 4445544 6788889875 3334444333 12 5556664333777777777766554
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.26 E-value=9.6e-09 Score=104.19 Aligned_cols=236 Identities=7% Similarity=-0.014 Sum_probs=165.8
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
....+.+|.+.++|++.++...++.|.+|+.. ++.. .+.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~--------------------------------------- 56 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFE--------------------------------------- 56 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEE---------------------------------------
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEE---------------------------------------
Confidence 45678999999999988887778899999876 3311 110
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeee-ec-CCCCeEEEEEeeC
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRV-FP-HSNYVTCVHFNPV 405 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~-~~-h~~~V~~l~f~p~ 405 (701)
+..+...+..+++.+++ .+++...++.|..||.. ++.... .. ....+.++++.+
T Consensus 57 ---------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~- 113 (300)
T 2qc5_A 57 ---------------------VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL- 113 (300)
T ss_dssp ---------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-
T ss_pred ---------------------CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-
Confidence 01123567889999888 45554457889999987 554322 12 346789999998
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCcEEEEe--cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 483 (701)
+++++++...++.|..||.. ++..... .....+..+++.++++.+++...++.|..|+. ++.... +. ..
T Consensus 114 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~----~~ 184 (300)
T 2qc5_A 114 NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YP----LP 184 (300)
T ss_dssp TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE----CS
T ss_pred CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---ee----CC
Confidence 88888877668899999987 6655332 23456899999999986666666788999998 443321 11 11
Q ss_pred CCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 484 ~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.....+.++++.+ ++.++++....+.|.+|+.......+........+.+++++++|++.++...++.|..|+.
T Consensus 185 ~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 185 TNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp STTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCCCcceEEECC-CCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 2235678999998 5676666666788999998433333333334567899999999997777767789999997
No 199
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.25 E-value=7.8e-09 Score=104.90 Aligned_cols=257 Identities=10% Similarity=0.098 Sum_probs=170.2
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCcee
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCI 298 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~ 298 (701)
...++.|.+|+.. . .+... .+..+...+.+|++.++|.++++...++.|..||.. ++. ..+.
T Consensus 37 ~~~~~~v~~~~~~-~--~~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~--------- 98 (300)
T 2qc5_A 37 QHKANKISSLDQS-G--RIKEF----EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEYP--------- 98 (300)
T ss_dssp ETTTTEEEEECTT-S--CEEEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEE---------
T ss_pred cCCCCeEEEECCC-C--ceEEE----ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEec---------
Confidence 3356888888755 1 11111 122345679999999999888877767889888865 331 1110
Q ss_pred EEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcE
Q 005352 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTV 377 (701)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I 377 (701)
+......+.++++.+++ ++++...++.|
T Consensus 99 ---------------------------------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 127 (300)
T 2qc5_A 99 ---------------------------------------------------LPQPDSGPYGITEGLNGDIWFTQLNGDRI 127 (300)
T ss_dssp ---------------------------------------------------CSSTTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred ---------------------------------------------------CCCCCCCCccceECCCCCEEEEccCCCeE
Confidence 01122457888999888 55555557889
Q ss_pred EEEECCCCeeeee-ec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe--cCCCcEEEEEEeeCCCeEEE
Q 005352 378 RLWRVGNDHCLRV-FP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVCYRPDGQGGIV 453 (701)
Q Consensus 378 ~iWd~~~~~~~~~-~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~ 453 (701)
..||.. ++.... +. ....+.++++.+ +++++++...++.|..||. +++..... .....+..+++.++|+..++
T Consensus 128 ~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 204 (300)
T 2qc5_A 128 GKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFV 204 (300)
T ss_dssp EEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred EEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEE
Confidence 999987 554422 22 346789999998 8887776666788999998 55555432 23356889999999977666
Q ss_pred EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeE
Q 005352 454 GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQL 533 (701)
Q Consensus 454 gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~ 533 (701)
....+.|.+|+. ++.... .. .......+.++++.+ ++.++++...++.|..||.......+........+.
T Consensus 205 ~~~~~~i~~~~~-~g~~~~---~~----~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~ 275 (300)
T 2qc5_A 205 EIMGNKIGRITT-TGEISE---YD----IPTPNARPHAITAGK-NSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPH 275 (300)
T ss_dssp ETTTTEEEEECT-TCCEEE---EE----CSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTTSCEEEEECCSTTCCCC
T ss_pred ccCCCEEEEEcC-CCcEEE---EE----CCCCCCCceEEEECC-CCCEEEeccCCCeEEEECCCCcEEEEECCccCCccc
Confidence 666778999998 333221 11 112345678999998 566666665679999999854333443333446688
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 534 SACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 534 ~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
+++++++|+++++.. . .|..++.
T Consensus 276 ~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 276 GITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CEEECTTSCEEEECS-S-EEEEEEE
T ss_pred eeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 999999998666655 4 6777764
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.25 E-value=4.1e-10 Score=113.63 Aligned_cols=191 Identities=13% Similarity=0.066 Sum_probs=143.9
Q ss_pred ecCCeEEEEECCCcEEEEECCCCeeeeeecCC--CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC--Cc
Q 005352 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFPHS--NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR--QI 438 (701)
Q Consensus 363 s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~--~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~ 438 (701)
+|++.|++++.++.|.+||..+++.+..+... ..+.++++.| ++++|+ +.++.|..||. +++.+..+... ..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 35558999999999999999999999998843 3689999999 999888 45788999999 78777544432 47
Q ss_pred EEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 439 VTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
+.++.+.|+|+.+++.+. ++.+..+|. +++......+. .....+......+.+.+ +++++++...++.|..||..
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~--~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFE--TGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEEC--CSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEecc--CCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC
Confidence 889999999999999887 778888886 45544333221 11111122344556777 78899999999999999987
Q ss_pred ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 518 NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 518 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.....+... ...+.++.+.++|+++++++.+++|..+|..+++.
T Consensus 155 -G~~~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 155 -GQLLNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp -SCEEEEEEC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred -CCEEEEEEC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 554444332 24566778889999999999888999999998873
No 201
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.24 E-value=4.4e-10 Score=129.61 Aligned_cols=201 Identities=5% Similarity=-0.008 Sum_probs=135.0
Q ss_pred CCccCeEEEEEecCC-eEEEEECC-C----cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCc-------
Q 005352 352 GHSGEILDLSWSKNN-YLLSASID-K----TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGK------- 418 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-~l~s~s~d-g----~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~------- 418 (701)
+|...+..++|||+| +|+.++.+ | .|++||+.+++.+........+..++|+| +++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEe-CCCEEEEEEECCcccccccc
Confidence 355568899999999 66655543 3 89999999998876433223367899999 9999999888766
Q ss_pred ---------EEEEeCCCCcE---EEEec--CCCcEEEEEEeeCCCeEEEEec-----CCcEEEEECCC------Ceeeee
Q 005352 419 ---------VRIWAVLSCHV---VDWVD--IRQIVTAVCYRPDGQGGIVGSM-----MGDCRFYNVSD------NHLELD 473 (701)
Q Consensus 419 ---------v~iwd~~~~~~---~~~~~--~~~~i~~i~~sp~g~~l~~gs~-----dg~v~i~d~~~------~~~~~~ 473 (701)
|++|++.+++. +.... +...+..+.|+|||++|+.++. +..|.+||+.+ +....
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~- 279 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW- 279 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC-
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce-
Confidence 99999988762 21121 3455789999999999988775 56899999975 32111
Q ss_pred eeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC----CcEEEEeCCccc----eeeecccCCCCeEEEEEecCCCEEE
Q 005352 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD----SQVRILQGPNVI----GKYKGLRRSGNQLSACFTSDGKHIV 545 (701)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d----g~I~iwd~~~~~----~~~~~~~~~~~v~~l~~s~dg~~l~ 545 (701)
. .+.. +...+.. .|+| ++..|+..+.. ..|.+||+.+.. ..+........+..++|++++.+++
T Consensus 280 ~--~l~~----~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 280 V--KLID----NFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp E--EEEC----SSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred E--EeeC----CCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 0 1111 1122333 4777 45555555542 369999987643 2232221223678899998888888
Q ss_pred EEeCCCc--EEEEeCCCCC
Q 005352 546 SAGEDSN--VYMWNCIGHE 562 (701)
Q Consensus 546 sgs~Dg~--I~iWd~~~~~ 562 (701)
+...|+. |++|++.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp EEEETTEEEEEEEETTTCC
T ss_pred EEEECCEEEEEEEECCCCC
Confidence 9888885 5666765554
No 202
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.21 E-value=2.6e-10 Score=119.57 Aligned_cols=188 Identities=9% Similarity=-0.006 Sum_probs=131.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
.+..+++++...+|++|+.++ +++|++........-. .. .
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~--~~-------------------------------------~ 78 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD--ST-------------------------------------P 78 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS--SC-------------------------------------C
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccc--cc-------------------------------------c
Confidence 688999999999999999985 6669986543100000 00 0
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCE
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~ 409 (701)
+ .+.... .+.. |+.|+| ++ .|+++ .++.|++||+.+....... .+...+.++.+.+ . .
T Consensus 79 --------~----~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~ 138 (388)
T 1xip_A 79 --------L----TFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--T 138 (388)
T ss_dssp --------C----CCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--E
T ss_pred --------c----cceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--C
Confidence 0 111122 2556 999999 55 77777 8899999999876654444 3677788887765 2 3
Q ss_pred EEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc---CCCC
Q 005352 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK---KAPC 486 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~---~~~~ 486 (701)
++++..||.|.+||+.+++... +...|++++|+|+| +++|..||++++|+...........+...... ..+.
T Consensus 139 ~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~ 213 (388)
T 1xip_A 139 LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE 213 (388)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT
T ss_pred EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCC
Confidence 8888999999999999887654 34689999999999 78899999999999887664211111111111 1356
Q ss_pred CCeeEEEEecCCCCEEEEE
Q 005352 487 KRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~ 505 (701)
..|.+++|.+ +..++++-
T Consensus 214 ~~V~sI~wl~-~~~flv~y 231 (388)
T 1xip_A 214 YSPLSVTILS-PQDFLAVF 231 (388)
T ss_dssp SEEEEEEESS-SSEEEEEE
T ss_pred eeEEEEEEec-CCeEEEEE
Confidence 8899999999 56666653
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.21 E-value=1.6e-09 Score=113.06 Aligned_cols=271 Identities=13% Similarity=0.061 Sum_probs=171.9
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEeecCeeeeeecCC
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
++.|.+.|...... ...+.....+ . |+++|||++|+.+. .++.|.+||..+.+.+.++...
T Consensus 58 ~~~V~ViD~~t~~v-------~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~ 128 (386)
T 3sjl_D 58 VTQQFVIDGEAGRV-------IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP 128 (386)
T ss_dssp SEEEEEEETTTTEE-------EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred CCEEEEEECCCCeE-------EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECC
Confidence 57888888653221 1233334445 3 99999999887775 3678999999988765554322
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS 370 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s 370 (701)
... . ......-..+.++|+| +++.
T Consensus 129 ~g~---------------------------------------------------r----~~~g~~P~~~a~spDGk~lyV 153 (386)
T 3sjl_D 129 DAP---------------------------------------------------R----FLVGTYPWMTSLTPDGKTLLF 153 (386)
T ss_dssp TCC---------------------------------------------------C----CCBSCCGGGEEECTTSSEEEE
T ss_pred Ccc---------------------------------------------------c----cccCCCCceEEEcCCCCEEEE
Confidence 100 0 0001123467899999 7777
Q ss_pred EEC--CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-CcEEEEec-C----CCcEE-E
Q 005352 371 ASI--DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVVDWVD-I----RQIVT-A 441 (701)
Q Consensus 371 ~s~--dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-~~~~~~~~-~----~~~i~-~ 441 (701)
+.. ++.|.++|+.+++.+..+.-.+. ..+.|.....|++.+.||++.+.++.+ +++..... . ..++. .
T Consensus 154 an~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~ 230 (386)
T 3sjl_D 154 YQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH 230 (386)
T ss_dssp EECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSC
T ss_pred EEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccccc
Confidence 664 68999999999999999875442 223353667888889999999999976 55432111 1 11221 2
Q ss_pred EEEe-eCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc----cCCCCCCeeEEEEecCCCCEEEEEEC---------
Q 005352 442 VCYR-PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----KKAPCKRITGFQFLPQDSSKVMVSCA--------- 507 (701)
Q Consensus 442 i~~s-p~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~~p~~~~~l~~~s~--------- 507 (701)
..|. ++|++++ .+.+|.|.+.|+.+........+.+... .......+..+++++ +++.+++...
T Consensus 231 ~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~ 308 (386)
T 3sjl_D 231 PAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKT 308 (386)
T ss_dssp CEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTS
T ss_pred ceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCC
Confidence 4554 5775555 5568999999998765433332221110 011112334567788 4555555432
Q ss_pred -CCcEEEEeCCccceeeecccCCCCeEEEEEecCCC-EEEEE-eCCCcEEEEeCCCCC
Q 005352 508 -DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK-HIVSA-GEDSNVYMWNCIGHE 562 (701)
Q Consensus 508 -dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~sg-s~Dg~I~iWd~~~~~ 562 (701)
.+.|.++|..+........ -...+.++++++|++ +|+++ ..++.|.++|..+++
T Consensus 309 ~~~~V~viD~~t~kv~~~i~-vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 309 ASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp CEEEEEEEETTTCCEEEEEE-EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCEEEEEECCCCeEEEEEE-CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 2579999998765444332 223678999999997 67665 458999999998887
No 204
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.20 E-value=1.4e-09 Score=113.96 Aligned_cols=172 Identities=8% Similarity=-0.034 Sum_probs=120.6
Q ss_pred eecCccccccccccceEEEEEccCccchhh---hcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeee
Q 005352 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELS---ALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (701)
Q Consensus 209 ~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~ 285 (701)
++.....+++|+. ..++||+.+...+... .-+.......+.+ |+.|+| |+.+|+++ .++.|++||+.+....
T Consensus 45 is~~~gll~a~~~-~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~ 119 (388)
T 1xip_A 45 ISNSKSLFVAASG-SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEF 119 (388)
T ss_dssp EETTTTEEEEEET-TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCE
T ss_pred EcCCCCEEEEeCC-CEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhcc
Confidence 3333444444444 5677798653321110 0011112334677 999999 99999999 8899999998765311
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
..+..|...+.++.+.+.
T Consensus 120 --------------------------------------------------------------~~~~~~~~~v~~i~~~~p 137 (388)
T 1xip_A 120 --------------------------------------------------------------RTVTSFEKPVFQLKNVNN 137 (388)
T ss_dssp --------------------------------------------------------------EEEEECSSCEEEEEECSS
T ss_pred --------------------------------------------------------------CccceeecceeeEEecCC
Confidence 112234455667766654
Q ss_pred CeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE--EEEe----------
Q 005352 366 NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VDWV---------- 433 (701)
Q Consensus 366 ~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~--~~~~---------- 433 (701)
. +++++.||.|.+||+.++.... +...|+|++|+| ++ ++.|..||++++|+...+++ ...+
T Consensus 138 ~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~ 210 (388)
T 1xip_A 138 T-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELP 210 (388)
T ss_dssp E-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSC
T ss_pred C-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCCccccccc
Confidence 3 8889999999999999887654 446899999999 77 77899999999999988775 4333
Q ss_pred cCCCcEEEEEEeeCCCeEEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVG 454 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~g 454 (701)
.+...|.+|+|.+++.++++=
T Consensus 211 ~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 211 VEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp TTTSEEEEEEESSSSEEEEEE
T ss_pred CCCeeEEEEEEecCCeEEEEE
Confidence 257889999999999888773
No 205
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.19 E-value=4.4e-09 Score=112.43 Aligned_cols=242 Identities=12% Similarity=0.053 Sum_probs=160.9
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCc
Q 005352 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (701)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (701)
.....|+|+++|+++++...++.|++||..++......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~------------------------------------------ 168 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH------------------------------------------ 168 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE------------------------------------------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee------------------------------------------
Confidence 46889999999998888877899999998776422111
Q ss_pred cEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCC--cEEEEECCCCeeeeee----c-CCCCeEEEEE
Q 005352 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDK--TVRLWRVGNDHCLRVF----P-HSNYVTCVHF 402 (701)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg--~I~iWd~~~~~~~~~~----~-h~~~V~~l~f 402 (701)
.. ..... ++|++++ .|+++..++ .|.+|+...+.....+ . ....+.++++
T Consensus 169 --------------------~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav 226 (409)
T 3hrp_A 169 --------------------PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVAL 226 (409)
T ss_dssp --------------------ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEE
T ss_pred --------------------cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEE
Confidence 11 11223 7899998 788877765 7899988766554444 3 4566889999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEEEE----ec-CCCcE-E-EEEEeeC-CCeEEEEecCCcEEEEECCCCeeeeee
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDW----VD-IRQIV-T-AVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~----~~-~~~~i-~-~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~~~~ 474 (701)
+| ++..|+.+..++.|+.||..++..... .. ..... . .++|+|+ +..+++-..++.|+.|+.........-
T Consensus 227 ~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g 305 (409)
T 3hrp_A 227 DE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCG 305 (409)
T ss_dssp CT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEE
T ss_pred eC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEe
Confidence 99 555666677788999999987764433 11 11111 3 8999995 555555666888999998754211100
Q ss_pred eEEeec-----ccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCccc-eeeeccc-------------CCCCeEE
Q 005352 475 EICVHS-----KKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVI-GKYKGLR-------------RSGNQLS 534 (701)
Q Consensus 475 ~~~~~~-----~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~~-~~~~~~~-------------~~~~v~~ 534 (701)
...... ..........++++.| ++.++++-. .++.|+.|+..+.. ..+.+.. .......
T Consensus 306 ~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~g 384 (409)
T 3hrp_A 306 SATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYD 384 (409)
T ss_dssp CTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEE
T ss_pred CCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceE
Confidence 000000 0001134578999999 577777777 88999999954332 2222210 1246889
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeC
Q 005352 535 ACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 535 l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
++++++|.++++-..++.|+.+++
T Consensus 385 iavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 385 ICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEcCCCCEEEEECCCCeEEEEEe
Confidence 999999888888888889988875
No 206
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.18 E-value=4.5e-09 Score=107.69 Aligned_cols=233 Identities=11% Similarity=0.058 Sum_probs=151.9
Q ss_pred eccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 246 IQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
+..+........|+|+|+ ++++...++.|..|+. +++
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~----------------------------------------- 77 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT----------------------------------------- 77 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-----------------------------------------
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-----------------------------------------
Confidence 444556678899999998 5677777889999986 332
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEE-CCCcEEEEECCCCeeeeeec-----CCCCeE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSAS-IDKTVRLWRVGNDHCLRVFP-----HSNYVT 398 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s-~dg~I~iWd~~~~~~~~~~~-----h~~~V~ 398 (701)
...+..+...+..+++.++|.|+.+. .++.|.+|+.. ++...... ....+.
T Consensus 78 ----------------------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~ 134 (305)
T 3dr2_A 78 ----------------------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPN 134 (305)
T ss_dssp ----------------------EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCC
T ss_pred ----------------------EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCC
Confidence 11122244567899999999555555 45789999986 54333222 123567
Q ss_pred EEEEeeCCCCEEEE----EEc-------------CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecC----
Q 005352 399 CVHFNPVDDNYFIS----GSI-------------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---- 457 (701)
Q Consensus 399 ~l~f~p~~~~~l~s----gs~-------------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d---- 457 (701)
.+++.| +++++++ |.. .+.|..||..+++..... .......++|+|+++.|+++...
T Consensus 135 ~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~ 212 (305)
T 3dr2_A 135 DLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGH 212 (305)
T ss_dssp CEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---
T ss_pred CEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCC
Confidence 899999 8988886 321 256888888777655444 44567889999999988887665
Q ss_pred --CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc-ceeeecccCCCCeEE
Q 005352 458 --GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-IGKYKGLRRSGNQLS 534 (701)
Q Consensus 458 --g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~ 534 (701)
+.|.+|++....+. ........ ......++++.+ +++ |.++..+ .|.+|+.... ...+.. + ..+.+
T Consensus 213 ~~~~i~~~~~~~~~l~-~~~~~~~~----~~~~pdgi~~d~-~G~-lwv~~~~-gv~~~~~~g~~~~~~~~--~-~~~~~ 281 (305)
T 3dr2_A 213 GSVEITAFAWRDGALH-DRRHFASV----PDGLPDGFCVDR-GGW-LWSSSGT-GVCVFDSDGQLLGHIPT--P-GTASN 281 (305)
T ss_dssp CCCEEEEEEEETTEEE-EEEEEECC----SSSCCCSEEECT-TSC-EEECCSS-EEEEECTTSCEEEEEEC--S-SCCCE
T ss_pred CCCEEEEEEecCCCcc-CCeEEEEC----CCCCCCeEEECC-CCC-EEEecCC-cEEEECCCCCEEEEEEC--C-CceeE
Confidence 68999998765521 11111111 123456788888 566 4444444 5999997532 222222 2 25889
Q ss_pred EEEecCCCEEEEEeCCCcEEEEe
Q 005352 535 ACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 535 l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
++|+++++.|+.++.++ ++.++
T Consensus 282 ~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 282 CTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp EEECTTSCEEEEEETTE-EEEEE
T ss_pred EEEeCCCCEEEEEcCCe-EEEEE
Confidence 99999999888887764 44333
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.18 E-value=2.4e-08 Score=101.84 Aligned_cols=231 Identities=8% Similarity=0.043 Sum_probs=149.9
Q ss_pred CCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 249 HDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 249 H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
+..-.-+..|+|+ +.++++...++.|..||..+++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~------------------------------------------ 48 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ------------------------------------------ 48 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE------------------------------------------
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE------------------------------------------
Confidence 3445668899995 456666677889999998765310
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecC-----CCCeEEEEE
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPH-----SNYVTCVHF 402 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h-----~~~V~~l~f 402 (701)
.+ .+...+.++++++++.|+.+. ++.|.+||..+++....... ...++.+++
T Consensus 49 ---------------------~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~ 105 (297)
T 3g4e_A 49 ---------------------RV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKV 105 (297)
T ss_dssp ---------------------EE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEE
T ss_pred ---------------------EE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEE
Confidence 01 123568899999999544444 56899999988876544331 245889999
Q ss_pred eeCCCCEEEEEEcC---------CcEEEEeCC-CCcEEEEecCCCcEEEEEEeeCCCeEEE-EecCCcEEEEECC--CCe
Q 005352 403 NPVDDNYFISGSID---------GKVRIWAVL-SCHVVDWVDIRQIVTAVCYRPDGQGGIV-GSMMGDCRFYNVS--DNH 469 (701)
Q Consensus 403 ~p~~~~~l~sgs~d---------g~v~iwd~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~~-gs~dg~v~i~d~~--~~~ 469 (701)
+| +++++++.... ..-.||.+. .++...........+.++|+|+++.|++ .+.++.|..|++. ++.
T Consensus 106 d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~ 184 (297)
T 3g4e_A 106 DP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQ 184 (297)
T ss_dssp CT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCC
T ss_pred CC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCc
Confidence 99 88877654322 223455443 2444444444456789999999987755 4557889999973 444
Q ss_pred eeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEe-cCCCEEEEEe
Q 005352 470 LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFT-SDGKHIVSAG 548 (701)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s-~dg~~l~sgs 548 (701)
+.....+.. .........++++.+ ++.+.++....+.|.+||..+.........+...+++++|. |+++.|+.++
T Consensus 185 ~~~~~~~~~---~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 185 ISNRRSVYK---LEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEEEEEE---CCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred ccCcEEEEE---CCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 321111111 111224577899988 57777777778899999987444333333355679999998 8888776554
Q ss_pred C
Q 005352 549 E 549 (701)
Q Consensus 549 ~ 549 (701)
.
T Consensus 261 ~ 261 (297)
T 3g4e_A 261 A 261 (297)
T ss_dssp B
T ss_pred C
Confidence 3
No 208
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.18 E-value=2.6e-08 Score=103.01 Aligned_cols=186 Identities=12% Similarity=0.029 Sum_probs=119.9
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecC-----CCCeEEEEEeeCCCCEEEEEEc------CCcEEEEe
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPH-----SNYVTCVHFNPVDDNYFISGSI------DGKVRIWA 423 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h-----~~~V~~l~f~p~~~~~l~sgs~------dg~v~iwd 423 (701)
..+.+++|++++.++.++.+ .|.+||..+++....... ...+.+++++| +++++++... .+.|..++
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe
Confidence 46889999999944445554 499999988876443321 23588999999 8887765542 24566666
Q ss_pred CCCCcEEEEecCCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECC--CC-eeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 424 VLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVS--DN-HLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 424 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
+++.............++|+|+++.++++ +.++.|.+|++. ++ .......+. . .........++++.+ ++
T Consensus 168 --~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~--~-~~~~~~~p~gi~~d~-~G 241 (326)
T 2ghs_A 168 --KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI--D-STGIKGGMDGSVCDA-EG 241 (326)
T ss_dssp --TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE--E-CTTSSSEEEEEEECT-TS
T ss_pred --CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE--E-CCCCCCCCCeeEECC-CC
Confidence 55554444444567899999999877655 457889999986 44 321111111 0 111224467888888 56
Q ss_pred CEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEe-cCCCEEEEEeC
Q 005352 500 SKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFT-SDGKHIVSAGE 549 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s-~dg~~l~sgs~ 549 (701)
.+.++...++.|.+||... ........+...+++++|+ ++++.|+.++.
T Consensus 242 ~lwva~~~~~~v~~~d~~g-~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 242 HIWNARWGEGAVDRYDTDG-NHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CEEEEEETTTEEEEECTTC-CEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CEEEEEeCCCEEEEECCCC-CEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 7777666778999999742 2222222245579999998 88877755543
No 209
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.15 E-value=2.4e-09 Score=122.94 Aligned_cols=240 Identities=13% Similarity=0.116 Sum_probs=151.4
Q ss_pred cCCCcEEEEEEccCCCEEEE-----EeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 248 AHDGSILTMKFSPDGQYLAS-----AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Las-----gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+|...+..++|||||++||- |+....|++||+.+++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~----------------------------------- 170 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET----------------------------------- 170 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-----------------------------------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-----------------------------------
Confidence 46678999999999999884 33346799999988763211
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCC-------------cEEEEECCCCee-
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDK-------------TVRLWRVGNDHC- 387 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg-------------~I~iWd~~~~~~- 387 (701)
.+.+ .....++|+ ++ .|+.++.+. .|++|++.+...
T Consensus 171 --------------------------~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~ 221 (693)
T 3iuj_A 171 --------------------------PLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED 221 (693)
T ss_dssp --------------------------EEEE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGG
T ss_pred --------------------------ccCC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCccc
Confidence 0010 112456899 88 777777664 399999987653
Q ss_pred -eeeec----CCCCeEEEEEeeCCCCEEEEEEc----CCcEEEEeCCCC--cEEEEecCCCcEEEEEEeeCCCeEEEEec
Q 005352 388 -LRVFP----HSNYVTCVHFNPVDDNYFISGSI----DGKVRIWAVLSC--HVVDWVDIRQIVTAVCYRPDGQGGIVGSM 456 (701)
Q Consensus 388 -~~~~~----h~~~V~~l~f~p~~~~~l~sgs~----dg~v~iwd~~~~--~~~~~~~~~~~i~~i~~sp~g~~l~~gs~ 456 (701)
...+. +...+..+.|+| ++++|+.... ...|+++|+.++ +...+..+....... ++++|..|+..+.
T Consensus 222 ~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~ 299 (693)
T 3iuj_A 222 DRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTN 299 (693)
T ss_dssp CEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEEC
T ss_pred ceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEEC
Confidence 23333 234578899999 8988765443 248999999776 455555555555554 6677766665543
Q ss_pred ----CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCC--cEEEEeCCccceeeecccCC
Q 005352 457 ----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADS--QVRILQGPNVIGKYKGLRRS 529 (701)
Q Consensus 457 ----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg--~I~iwd~~~~~~~~~~~~~~ 529 (701)
.+.|..+++.+.....-..+.. +...+. .|+++ ++.|+... .++ .|++|+..............
T Consensus 300 ~~~~~~~l~~~d~~~~~~~~~~~l~~------~~~~~~--~~s~~-g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~ 370 (693)
T 3iuj_A 300 RDAPNRRLVTVDAANPGPAHWRDLIP------ERQQVL--TVHSG-SGYLFAEYMVDATARVEQFDYEGKRVREVALPGL 370 (693)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEEC------CCSSCE--EEEEE-TTEEEEEEEETTEEEEEEECTTSCEEEEECCSSS
T ss_pred CCCCCCEEEEEeCCCCCccccEEEec------CCCCEE--EEEEE-CCEEEEEEEECCeeEEEEEECCCCeeEEeecCCC
Confidence 3578999998754310011111 112233 77884 55555554 454 68888876433222222244
Q ss_pred CCeEEEEEecCCCEEEEEeCC----CcEEEEeCCCCC
Q 005352 530 GNQLSACFTSDGKHIVSAGED----SNVYMWNCIGHE 562 (701)
Q Consensus 530 ~~v~~l~~s~dg~~l~sgs~D----g~I~iWd~~~~~ 562 (701)
..+..+.++++++.|+....+ +.|+.||+.+++
T Consensus 371 ~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 371 GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 567778888888766655444 789999998765
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.12 E-value=4.7e-09 Score=111.51 Aligned_cols=271 Identities=11% Similarity=0.058 Sum_probs=175.4
Q ss_pred ceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEeecCeeeeeecCCC
Q 005352 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPE 292 (701)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~iWd~~~~~~~~~~~~~~ 292 (701)
+.|.++|...... ...+..-..+ .|.++|||++|+.+. .++.|.++|..+.+.+.++.+..
T Consensus 99 ~~VsVID~~t~~v-------v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g 169 (426)
T 3c75_H 99 TQQFVIDGSTGRI-------LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD 169 (426)
T ss_dssp EEEEEEETTTTEE-------EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred CeEEEEECCCCEE-------EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC
Confidence 7899998654321 1223333445 799999999888775 46789999998887665543220
Q ss_pred CCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEE
Q 005352 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA 371 (701)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~ 371 (701)
.. . + ........+.++|++ +|+.+
T Consensus 170 ~~--------------------------------------------------r----~-~~g~~P~~~~~spDGk~lyV~ 194 (426)
T 3c75_H 170 AP--------------------------------------------------R----F-LVGTYQWMNALTPDNKNLLFY 194 (426)
T ss_dssp CC--------------------------------------------------C----C-CBSCCGGGSEECTTSSEEEEE
T ss_pred cc--------------------------------------------------c----c-ccCCCcceEEEcCCCCEEEEE
Confidence 00 0 0 001123456899999 77777
Q ss_pred EC--CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE----ecC-CCc-EEEEE
Q 005352 372 SI--DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW----VDI-RQI-VTAVC 443 (701)
Q Consensus 372 s~--dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~----~~~-~~~-i~~i~ 443 (701)
.. ++.|.+.|+.+++.+..+.-... ....|.....+++.+.||.+.+.++.++++... +.. ..+ ...+.
T Consensus 195 n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~ 271 (426)
T 3c75_H 195 QFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPA 271 (426)
T ss_dssp ECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCE
T ss_pred ecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEee
Confidence 64 57899999999999988875442 334453457778888899999889866655421 111 111 12356
Q ss_pred EeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC----CCCCCeeEEEEecCCCCEEEEEEC----------CC
Q 005352 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK----APCKRITGFQFLPQDSSKVMVSCA----------DS 509 (701)
Q Consensus 444 ~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~----~~~~~i~~l~~~p~~~~~l~~~s~----------dg 509 (701)
|.+++..++..+..+.+.+.|+..........+....... ........+.++| ++..+++... .+
T Consensus 272 ~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~gthk~~s~ 350 (426)
T 3c75_H 272 FSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEWKHKAASR 350 (426)
T ss_dssp ECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEEEEEEECCTTCTTSCEE
T ss_pred ecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEEEEecccccccccCCCC
Confidence 7899988888888999999999766543322222110000 0011122368899 4555554432 35
Q ss_pred cEEEEeCCccceeeecccCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCC
Q 005352 510 QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK-HIVSAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 510 ~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~sgs-~Dg~I~iWd~~~~~ 562 (701)
.|.++|..+....-... -......+.|+|||+ +++++. .++.|.++|..+.+
T Consensus 351 ~VsVID~~T~kvv~~I~-vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 351 FVVVLNAETGERINKIE-LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEECCCCeEEEEEE-CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 79999998665444332 123578899999999 888888 58999999999887
No 211
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.12 E-value=6.5e-09 Score=108.45 Aligned_cols=242 Identities=10% Similarity=0.025 Sum_probs=153.6
Q ss_pred EEEecCC-eEEEEE----------CCCcEEEEECCCCeeeeeecCC--------CCeEEEEEeeCCCCEEEEEEc--CCc
Q 005352 360 LSWSKNN-YLLSAS----------IDKTVRLWRVGNDHCLRVFPHS--------NYVTCVHFNPVDDNYFISGSI--DGK 418 (701)
Q Consensus 360 l~~s~~~-~l~s~s----------~dg~I~iWd~~~~~~~~~~~h~--------~~V~~l~f~p~~~~~l~sgs~--dg~ 418 (701)
++++|++ +++.++ .++.|.+||..+.+.+..+.-. .....++|+| ++++++++.. ++.
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCe
Confidence 8999999 565554 3678999999999998887521 2566799999 9999888864 689
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC-CeeeeeeeEEeecccCCCCCCe-eEEEEec
Q 005352 419 VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRI-TGFQFLP 496 (701)
Q Consensus 419 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~i-~~l~~~p 496 (701)
|.++|+.+++++..+...+. ...+....+.+++.+.||.+.+.++.. ++..... ..........+ ....|.+
T Consensus 162 VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~----~~~~~~~~~~~~~~~~~~~ 235 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH----TEVFHPEDEFLINHPAYSQ 235 (386)
T ss_dssp EEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE----CCCCSCTTSCBCSCCEEET
T ss_pred EEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee----cceeccccccccccceeEc
Confidence 99999999999877765543 223333456777888899999999876 4442111 01111111122 2235654
Q ss_pred CCCCEEEEEECCCcEEEEeCCccce----eeecc--------cCCCCeEEEEEecCCCEEEEEeC----------CCcEE
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVIG----KYKGL--------RRSGNQLSACFTSDGKHIVSAGE----------DSNVY 554 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~~----~~~~~--------~~~~~v~~l~~s~dg~~l~sgs~----------Dg~I~ 554 (701)
.++.++ ..+.++.|++.|...... .+... ........++++++++.|+.+.. .+.|.
T Consensus 236 ~dG~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~ 314 (386)
T 3sjl_D 236 KAGRLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV 314 (386)
T ss_dssp TTTEEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCcEE-EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEE
Confidence 355444 466689999999864321 11100 01123335777999998887643 24688
Q ss_pred EEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcc-ccccCCCC
Q 005352 555 MWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQE-YVFESFPK 633 (701)
Q Consensus 555 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~-~~~~s~d~ 633 (701)
+.|+.+.+... .+.. ...+..+.++|++ ... |++...++
T Consensus 315 viD~~t~kv~~--------~i~v-----------------------------g~~~~~lavs~D~---~~~ly~tn~~~~ 354 (386)
T 3sjl_D 315 VLDAKTGERLA--------KFEM-----------------------------GHEIDSINVSQDE---KPLLYALSTGDK 354 (386)
T ss_dssp EEETTTCCEEE--------EEEE-----------------------------EEEECEEEECSSS---SCEEEEEETTTT
T ss_pred EEECCCCeEEE--------EEEC-----------------------------CCCcceEEECCCC---CeEEEEEcCCCC
Confidence 88888876211 1100 0123456778872 223 44456688
Q ss_pred cccCCCCccCCCCccc
Q 005352 634 GCATWPEEKLPALSQL 649 (701)
Q Consensus 634 ~~~~W~~~~~~~~~~~ 649 (701)
.+.+++...+..+.++
T Consensus 355 ~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 355 TLYIHDAESGEELRSV 370 (386)
T ss_dssp EEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCcEEEEe
Confidence 8999998888876665
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.11 E-value=1.4e-08 Score=103.93 Aligned_cols=199 Identities=8% Similarity=0.034 Sum_probs=133.3
Q ss_pred EcCCccCeEEEEEecCC-eEEE-------EECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEeeCC-CCEEEEEEc
Q 005352 350 FHGHSGEILDLSWSKNN-YLLS-------ASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVD-DNYFISGSI 415 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~~-~l~s-------~s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~~-~~~l~sgs~ 415 (701)
+...-....+++|.+++ .+++ ...++.|.+||..+++...... +...+.++++++ + ++++++ ..
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~-~~ 90 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVA-DM 90 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEE-ET
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEE-EC
Confidence 34444567899999888 5555 4778999999988877654332 346789999998 7 554544 44
Q ss_pred CCcEEEEeCCCCcEEEE-ecC-----CCcEEEEEEeeCCCeEEEEecC---------------CcEEEEECCCCeeeeee
Q 005352 416 DGKVRIWAVLSCHVVDW-VDI-----RQIVTAVCYRPDGQGGIVGSMM---------------GDCRFYNVSDNHLELDA 474 (701)
Q Consensus 416 dg~v~iwd~~~~~~~~~-~~~-----~~~i~~i~~sp~g~~l~~gs~d---------------g~v~i~d~~~~~~~~~~ 474 (701)
.+.|.+||.. ++.... ... ...+..++++++|+.+++...+ +.|..|+.. ++....
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~- 167 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV- 167 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-
Confidence 5579999998 766544 321 1347899999999877776654 567777765 332211
Q ss_pred eEEeecccCCCCCCeeEEEEe----cCCCCEEEE-EECCCcEEEEeCC-ccc----eeeec-ccCC-CCeEEEEEecCCC
Q 005352 475 EICVHSKKKAPCKRITGFQFL----PQDSSKVMV-SCADSQVRILQGP-NVI----GKYKG-LRRS-GNQLSACFTSDGK 542 (701)
Q Consensus 475 ~~~~~~~~~~~~~~i~~l~~~----p~~~~~l~~-~s~dg~I~iwd~~-~~~----~~~~~-~~~~-~~v~~l~~s~dg~ 542 (701)
. . .......++++ | +++.+++ ...++.|.+||.. ... ..+.. ..+. ..+..++++++|+
T Consensus 168 -~--~-----~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 238 (314)
T 1pjx_A 168 -D--T-----AFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp -E--E-----EESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred -c--c-----CCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence 0 0 11345788999 8 5545544 4568999999865 211 11111 1122 5678899999999
Q ss_pred EEEEEeCCCcEEEEeCCCCC
Q 005352 543 HIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 543 ~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++++...++.|.+|+.++++
T Consensus 239 l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 239 LLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEEEEETTTEEEEECTTCBS
T ss_pred EEEEEcCCCEEEEEcCCCCc
Confidence 88888888999999987554
No 213
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.09 E-value=8.5e-08 Score=100.99 Aligned_cols=240 Identities=8% Similarity=-0.050 Sum_probs=151.6
Q ss_pred EEEEecCC-eEEEEE----------CCCcEEEEECCCCeeeeeecCC--------CCeEEEEEeeCCCCEEEEEEc--CC
Q 005352 359 DLSWSKNN-YLLSAS----------IDKTVRLWRVGNDHCLRVFPHS--------NYVTCVHFNPVDDNYFISGSI--DG 417 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s----------~dg~I~iWd~~~~~~~~~~~h~--------~~V~~l~f~p~~~~~l~sgs~--dg 417 (701)
.++++|++ +++.+. .++.|.+||..+.+.+..+... .....++|+| ++++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 78999999 666664 3678999999998888776532 3456899999 9999998874 47
Q ss_pred cEEEEeCCCCcEEEE-ecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 418 KVRIWAVLSCHVVDW-VDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 418 ~v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
.|.++| .+++++.. +..... +.+.|++ +.+++.+.||.+.+++. +++....... ...............+.
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~--~~~~~~~~p~~~~~~~~ 221 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLV--GAMLTAAQNLLTQPAQA 221 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEec--cccccCCcceeecceeE
Confidence 899999 99988876 655443 4455655 45566778999999999 6654421110 00001111112234566
Q ss_pred cCCCCEEEEEECCCcEEEEeCCccce----eeeccc--------CCCCeEEEEEecCCCEEEEEeC----------CCcE
Q 005352 496 PQDSSKVMVSCADSQVRILQGPNVIG----KYKGLR--------RSGNQLSACFTSDGKHIVSAGE----------DSNV 553 (701)
Q Consensus 496 p~~~~~l~~~s~dg~I~iwd~~~~~~----~~~~~~--------~~~~v~~l~~s~dg~~l~sgs~----------Dg~I 553 (701)
++++.++++ +..+.+.+.|...... .+.... .......+.++|+++.|+.+.. .+.|
T Consensus 222 ~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V 300 (373)
T 2mad_H 222 NKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred ecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence 644444444 4778999999853221 111100 1122344778898888777653 3568
Q ss_pred EEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCc-cccccC-C
Q 005352 554 YMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQ-EYVFES-F 631 (701)
Q Consensus 554 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~-~~~~~s-~ 631 (701)
.++|..+.+... .+ + -...+..+.++|+ +. .++++. .
T Consensus 301 ~VID~~t~~vv~--------~i-----------~------------------~g~~p~~i~~s~D----g~~~l~v~~~~ 339 (373)
T 2mad_H 301 TSVTGLVGQTSS--------QI-----------S------------------LGHDVDAISVAQD----GGPDLYALSAG 339 (373)
T ss_pred EEEECCCCEEEE--------EE-----------E------------------CCCCcCeEEECCC----CCeEEEEEcCC
Confidence 888887765210 00 0 0113455778887 44 555555 5
Q ss_pred CCcccCCCCccCCCCcc
Q 005352 632 PKGCATWPEEKLPALSQ 648 (701)
Q Consensus 632 d~~~~~W~~~~~~~~~~ 648 (701)
++.+.+++...+..+..
T Consensus 340 ~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 340 TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCeEEEEECCCCCEEee
Confidence 88999999988887666
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.03 E-value=1.4e-08 Score=105.79 Aligned_cols=201 Identities=12% Similarity=0.047 Sum_probs=130.9
Q ss_pred CCccCeEEEEEecCCeEEEEEC------CCcEEEEECCCCeeeeeecC-------CCCeEEEEEeeCCCCEEEEEE---c
Q 005352 352 GHSGEILDLSWSKNNYLLSASI------DKTVRLWRVGNDHCLRVFPH-------SNYVTCVHFNPVDDNYFISGS---I 415 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~~l~s~s~------dg~I~iWd~~~~~~~~~~~h-------~~~V~~l~f~p~~~~~l~sgs---~ 415 (701)
+|...+..+++.+++.|+.+.. ++.|.+||+.+++.+..+.. ...+..++++|.++..+++-. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 3567899999999995544442 57899999999987776642 245789999982344445554 5
Q ss_pred CCcEEEEeCCCCcEEEEecC------------------------------CCcEEEEEEeeCCCeEEEEecCC-cEEEEE
Q 005352 416 DGKVRIWAVLSCHVVDWVDI------------------------------RQIVTAVCYRPDGQGGIVGSMMG-DCRFYN 464 (701)
Q Consensus 416 dg~v~iwd~~~~~~~~~~~~------------------------------~~~i~~i~~sp~g~~l~~gs~dg-~v~i~d 464 (701)
++.|.+||+.+++....... ...+..|+|+|+|+.|+++...+ .+..++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 78999999988776554321 02368899999999998887766 444444
Q ss_pred CC---CCeee---eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC-CccceeeecccCCCCeEEEEE
Q 005352 465 VS---DNHLE---LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG-PNVIGKYKGLRRSGNQLSACF 537 (701)
Q Consensus 465 ~~---~~~~~---~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~-~~~~~~~~~~~~~~~v~~l~~ 537 (701)
.. ..... ....+... .......++++.+ ++.++++...++.|.+||. ...............+.+++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~----g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~ 298 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERY----SEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNF 298 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEE----EECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEE
T ss_pred HHHhcCCCCChhhhhcceEec----ccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEE
Confidence 21 11000 00000000 0112456789998 6788888888999999998 322222222123456899999
Q ss_pred ecCCCEEEEEeCCCcEEEEe
Q 005352 538 TSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 538 s~dg~~l~sgs~Dg~I~iWd 557 (701)
.++|.++++.+..+.+.+|+
T Consensus 299 ~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 299 GSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp CTTSCEEEEECCGGGSGGGB
T ss_pred CCCCcEEEEeCccccccccc
Confidence 99999888887665554444
No 215
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.02 E-value=1.2e-07 Score=99.62 Aligned_cols=189 Identities=12% Similarity=0.116 Sum_probs=128.5
Q ss_pred EEEEEecCCeEEEEECC------CcEEEEECCCCeeeeeecCC----CCeEEEEEeeCCCCEEEEEE-------------
Q 005352 358 LDLSWSKNNYLLSASID------KTVRLWRVGNDHCLRVFPHS----NYVTCVHFNPVDDNYFISGS------------- 414 (701)
Q Consensus 358 ~~l~~s~~~~l~s~s~d------g~I~iWd~~~~~~~~~~~h~----~~V~~l~f~p~~~~~l~sgs------------- 414 (701)
..+...|++.++++..+ +.|.+.|..+++.+..+... ..-..+-|+| +.+.+++..
T Consensus 141 h~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~ 219 (462)
T 2ece_A 141 HTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKL 219 (462)
T ss_dssp EEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCT
T ss_pred cceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccch
Confidence 45566788855555444 78999999999999988622 3345688899 888888874
Q ss_pred ------cCCcEEEEeCCCCcEEEEecCC---CcEEEEEE--eeCCCeEEEEec------CCcEEEEECCCCeeeeeeeEE
Q 005352 415 ------IDGKVRIWAVLSCHVVDWVDIR---QIVTAVCY--RPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 415 ------~dg~v~iwd~~~~~~~~~~~~~---~~i~~i~~--sp~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~~~ 477 (701)
.+..|.+||+.+++.+..+... .....+.| +|+++++++++. +++|.+|....+.......+.
T Consensus 220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId 299 (462)
T 2ece_A 220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE 299 (462)
T ss_dssp TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence 3688999999998877766654 34555656 999999888874 568888777666554433332
Q ss_pred eecccCC------------CCCCeeEEEEecCCCCEEEEEEC-CCcEEEEeCCcc---c--eeeeccc------------
Q 005352 478 VHSKKKA------------PCKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPNV---I--GKYKGLR------------ 527 (701)
Q Consensus 478 ~~~~~~~------------~~~~i~~l~~~p~~~~~l~~~s~-dg~I~iwd~~~~---~--~~~~~~~------------ 527 (701)
+...... .......|.+++ ++++|.++.. .+.|.+||+... . ......+
T Consensus 300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~ 378 (462)
T 2ece_A 300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK 378 (462)
T ss_dssp ECCEECCSSCCGGGGGGTEECCCCCCEEECT-TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred CCCccccccccccccccccCCCceeEEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence 2221100 024578899999 5666666655 889999998522 1 1111110
Q ss_pred CCCCeEEEEEecCCCEEEEEe
Q 005352 528 RSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 528 ~~~~v~~l~~s~dg~~l~sgs 548 (701)
..+....+.++|||++|+++.
T Consensus 379 ~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 379 LTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCCEEEEcCCCCEEEEEc
Confidence 011357899999999999988
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.98 E-value=5.6e-08 Score=103.82 Aligned_cols=204 Identities=14% Similarity=0.061 Sum_probs=142.4
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCC--cEEEEeCCCCcEEE
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG--KVRIWAVLSCHVVD 431 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg--~v~iwd~~~~~~~~ 431 (701)
.....|+|++++ ++++...++.|++||..++............. ++|+| +++.|+++..++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 467899999999 55555667899999999887776655444444 99999 888888888766 78889887665433
Q ss_pred Ee----c-CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE
Q 005352 432 WV----D-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 432 ~~----~-~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s 506 (701)
.. . ....+..++++|++..|+++..++.|+.||..+............. .....+...++|+|+++.++++-.
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g--~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSG--SLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCS--CCCCSSCCEEEEETTTTEEEEEET
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccC--CCCCCccccEEEeCCCCEEEEEeC
Confidence 33 2 4456788999996666666777889999999876533211100100 001111238999996677777777
Q ss_pred CCCcEEEEeCCccceeeeccc-------------CCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCC
Q 005352 507 ADSQVRILQGPNVIGKYKGLR-------------RSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 507 ~dg~I~iwd~~~~~~~~~~~~-------------~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~~ 562 (701)
.++.|+.|+.......+.+.. .-.....++++++|+++++-. .++.|+.|++.++.
T Consensus 287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 789999999765433333221 124578999999999888877 88999999976654
No 217
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.98 E-value=3.6e-08 Score=114.14 Aligned_cols=194 Identities=10% Similarity=0.023 Sum_probs=125.6
Q ss_pred CccCeEEEEEecCC-eEEEEECC-----CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCc--------
Q 005352 353 HSGEILDLSWSKNN-YLLSASID-----KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGK-------- 418 (701)
Q Consensus 353 h~~~I~~l~~s~~~-~l~s~s~d-----g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~-------- 418 (701)
|...+..++|||+| +|+.++.+ ..|++||+.+++.+....+...+..++|+| + +.|+.+..++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEEST-T-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEEC-C-CEEEEEEecCccccccccc
Confidence 44467889999999 66655543 359999999998765432222345789999 8 88888876654
Q ss_pred ------EEEEeCCCCcE--EEEec---CCCcEEEEEEeeCCCeEEEEecCC-----cEEEEECCCCeee-eeeeEEeecc
Q 005352 419 ------VRIWAVLSCHV--VDWVD---IRQIVTAVCYRPDGQGGIVGSMMG-----DCRFYNVSDNHLE-LDAEICVHSK 481 (701)
Q Consensus 419 ------v~iwd~~~~~~--~~~~~---~~~~i~~i~~sp~g~~l~~gs~dg-----~v~i~d~~~~~~~-~~~~~~~~~~ 481 (701)
|++|++.+++. ..... +...+..+.|+|||++|+..+.++ .|++||+.++... .. .+..
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~---~l~~- 314 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT---ALIP- 314 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE---EEEC-
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE---EecC-
Confidence 89999987652 12222 223588999999999998887654 7999999776211 11 1111
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEEC----CCcEEEEeCCccc---eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCA----DSQVRILQGPNVI---GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~----dg~I~iwd~~~~~---~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
+...+... +.| ++..|+..+. ++.|.+||+.... ..+. ..+...+..++|+ ++.++++...|+..+
T Consensus 315 ---~~~~~~~~-~~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 315 ---DLKAQWDF-VDG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV-PESKDNLESVGIA-GNRLFASYIHDAKSQ 387 (741)
T ss_dssp ---SSSSCEEE-EEE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE-CCCSSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred ---CCCceEEE-Eec-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe-cCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 11223333 346 5666666665 3459999987531 2222 2233456677887 667788888999877
Q ss_pred EEeCC
Q 005352 555 MWNCI 559 (701)
Q Consensus 555 iWd~~ 559 (701)
||.++
T Consensus 388 l~~~~ 392 (741)
T 1yr2_A 388 VLAFD 392 (741)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77654
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.94 E-value=3.1e-07 Score=93.46 Aligned_cols=196 Identities=12% Similarity=0.073 Sum_probs=132.2
Q ss_pred CccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 353 HSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 353 h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
+..-..+..|++++ .+++...++.|..||..+++. ..+.....+.+++++| +++++++ . ++.|.+||..+++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEE
Confidence 34455688999954 566666789999999988765 4555678899999999 8885554 4 568999999888765
Q ss_pred EEecC-----CCcEEEEEEeeCCCeEEEEecC---------CcEEEEECCCC-eeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 431 DWVDI-----RQIVTAVCYRPDGQGGIVGSMM---------GDCRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 431 ~~~~~-----~~~i~~i~~sp~g~~l~~gs~d---------g~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
.+... ...+..++++|+|+.+++.... ..-.+|.+... +... + .. .......++|+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~-~~-----~~~~pngi~~s 157 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---Y-FD-----QVDISNGLDWS 157 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---E-EE-----EESBEEEEEEC
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---E-ee-----ccccccceEEc
Confidence 44332 2347889999999866554321 23345554432 2211 0 00 11345789999
Q ss_pred cCCCC-EEEEEECCCcEEEEeCC--ccc----eee-ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 496 PQDSS-KVMVSCADSQVRILQGP--NVI----GKY-KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 496 p~~~~-~l~~~s~dg~I~iwd~~--~~~----~~~-~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
| +++ ++++.+.++.|.+|+.. +.. ..+ ........+..++++++|++.++....+.|..|+.++++
T Consensus 158 p-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 158 L-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp T-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred C-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence 9 455 45566668899999863 221 112 111233567899999999988888888899999988765
No 219
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.92 E-value=9.1e-07 Score=93.19 Aligned_cols=188 Identities=11% Similarity=0.016 Sum_probs=121.1
Q ss_pred cCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEE---
Q 005352 364 KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT--- 440 (701)
Q Consensus 364 ~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~--- 440 (701)
.++.++.++.++.|..+|..+++.+..+.....+.+.... .+..++.++.++.|..+|..+++.+-.......+.
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 3558888899999999999999988777643333221111 24577888889999999999998775544433321
Q ss_pred ---EEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC--CCCCCe-eEEEEecCCCCEEEEEECCCcEEEE
Q 005352 441 ---AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK--APCKRI-TGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 441 ---~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~~~~i-~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
.... .+..+++++.++.+..+|..+++.............. .....+ ..... .+..+++++.++.+..+
T Consensus 180 ~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 180 GESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNLTAL 254 (376)
T ss_dssp CCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCEEEE
T ss_pred CCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEEEEE
Confidence 1222 2457888888999999999988776543321110000 000000 00011 24678888889999999
Q ss_pred eCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 515 QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|..+........ ......+.. ++..|+.++.++.|+.+|..+++
T Consensus 255 d~~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 255 DLRSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp ETTTCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCC
T ss_pred ECCCCcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCc
Confidence 988766555432 233444444 46688888899999999998886
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.86 E-value=4.3e-08 Score=104.08 Aligned_cols=266 Identities=8% Similarity=0.079 Sum_probs=167.5
Q ss_pred CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE----------cCCcEEEEeCCCCcEEEEecCC--------
Q 005352 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS----------IDGKVRIWAVLSCHVVDWVDIR-------- 436 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs----------~dg~v~iwd~~~~~~~~~~~~~-------- 436 (701)
+.|.++|..+++.+..+.-.... .++++| ++++++++. .++.|.++|..+.+.+..+...
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 69999999999999999844444 899999 888777765 3678999999999888655432
Q ss_pred CcEEEEEEeeCCCeEEEEec--CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 437 QIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
.....+.++|||++++++.. ++.|.++|+.+.+....... .. +....|.....+++.+.||.+.+.
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v--~g----------~~~~~p~g~~~~v~~~~dG~~~~V 244 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV--PD----------CYHIFPASPTVFYMNCRDGSLARV 244 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CS----------EEEEEEEETTEEEEEETTSSEEEE
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc--CC----------ceeeccCCCcEEEEEcCCCCEEEE
Confidence 34567899999999999874 57899999999886543221 10 123334344566667777777777
Q ss_pred eCCccceeee----cccCCCC-eEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCC
Q 005352 515 QGPNVIGKYK----GLRRSGN-QLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWC 589 (701)
Q Consensus 515 d~~~~~~~~~----~~~~~~~-v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 589 (701)
+......... ......+ ...+.|.+++..++..+..+.|++.|+.+...... ........ ..+...|.
T Consensus 245 ~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~------~~~~~~~~-~~i~~g~~ 317 (426)
T 3c75_H 245 DFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFR------APIEALTE-AERADDWR 317 (426)
T ss_dssp ECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEEC------CCEESSCT-TTGGGTEE
T ss_pred ECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEe------eeeeeccc-cccccccc
Confidence 7632211100 0001111 12356789998887778889999999876541100 00000000 00000000
Q ss_pred CCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccC---------CCCcccCCCCccCCCCccccccccchhhhh
Q 005352 590 GLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFES---------FPKGCATWPEEKLPALSQLSSASALHKSQY 660 (701)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s---------~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 660 (701)
-.....+.++|++ ...|++.. ..+.+.+.|...+..+.+++..
T Consensus 318 -----------------p~g~~~va~s~dg---~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-------- 369 (426)
T 3c75_H 318 -----------------PGGWQQTAYHRQS---DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-------- 369 (426)
T ss_dssp -----------------ECSSSCEEEEGGG---TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--------
T ss_pred -----------------cCCceeeEEcCCC---CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--------
Confidence 0011123456651 22333321 1346778888888888777554
Q ss_pred hhhhcccccccccCCCcc-EEEEecC-CCeEeEEee
Q 005352 661 KFLKSSCLCTTSSHAWGL-VIVTAGW-DGRIRSFLN 694 (701)
Q Consensus 661 ~~~~~~~~~~~~~~~~g~-~ivTgg~-DG~Irvw~~ 694 (701)
...+.+.++++ |+ .++++.+ ++.|-|++.
T Consensus 370 ----~~P~gia~spD-g~~~lyv~n~~s~~VsVID~ 400 (426)
T 3c75_H 370 ----HEIDSINVSQD-AEPLLYALSAGTQTLHIYDA 400 (426)
T ss_dssp ----EEECEEEECCS-SSCEEEEEETTTTEEEEEET
T ss_pred ----CCcCeEEEccC-CCEEEEEEcCCCCeEEEEEC
Confidence 24677889999 87 8888875 899999974
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.81 E-value=3.1e-08 Score=103.41 Aligned_cols=262 Identities=10% Similarity=-0.007 Sum_probs=157.2
Q ss_pred eEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEeecCeeeeeecCCCC
Q 005352 224 RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 224 ~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
.|.|.|...... + ..+.....+ .+.|+|||++|+.+. .++.|.+||..+++.+.++..+..
T Consensus 47 ~vsvID~~t~~v-~------~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~ 117 (368)
T 1mda_H 47 ENWVSCAGCGVT-L------GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA 117 (368)
T ss_dssp EEEEEETTTTEE-E------EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred eEEEEECCCCeE-E------EEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc
Confidence 777877543221 1 223333445 799999999988886 378999999999887665543210
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s 372 (701)
. + ...+ .....++++|+| +++.+.
T Consensus 118 ~--------------------------------------------------~---~~~g--~~P~~ia~SpDGk~lyVan 142 (368)
T 1mda_H 118 P--------------------------------------------------R---FSVG--PRVHIIGNCASSACLLFFL 142 (368)
T ss_dssp C--------------------------------------------------S---CCBS--CCTTSEEECTTSSCEEEEE
T ss_pred c--------------------------------------------------c---cccC--CCcceEEEcCCCCEEEEEc
Confidence 0 0 0000 123467899999 777776
Q ss_pred C--CCcEEE--EECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-----CcEEE----Eec-CCCc
Q 005352 373 I--DKTVRL--WRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-----CHVVD----WVD-IRQI 438 (701)
Q Consensus 373 ~--dg~I~i--Wd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-----~~~~~----~~~-~~~~ 438 (701)
. ...|.+ +|+.+ +..+...+. +.+.|.....+++.+.||.+.+.|+.+ ++... ... ...+
T Consensus 143 ~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P 216 (368)
T 1mda_H 143 FGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216 (368)
T ss_dssp CSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred cCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence 4 467888 99877 445543222 223443455667777899998899887 43321 011 1223
Q ss_pred EEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc----cCCCCCCeeEEEEecCCCCEEEEEEC-------
Q 005352 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----KKAPCKRITGFQFLPQDSSKVMVSCA------- 507 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~~p~~~~~l~~~s~------- 507 (701)
. . .+++..++..+. +.+.+.|+..........+.+... ..........+.++| +++.++++..
T Consensus 217 ~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~ 290 (368)
T 1mda_H 217 A---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCL 290 (368)
T ss_dssp E---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTT
T ss_pred c---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCccc
Confidence 3 3 666777666666 999999997543222111111000 000001112267999 5555555432
Q ss_pred --CCcEEEEeCCccceeeecccCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCC
Q 005352 508 --DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK-HIVSAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 508 --dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~sgs-~Dg~I~iWd~~~~~ 562 (701)
++.+.++|..+........ -......++|+|||+ ++++.. .++.|.++|+.+.+
T Consensus 291 ~~~~~~~ViD~~t~~vv~~i~-vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 291 AAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred ccCCCEEEEECCCCeEEEEEE-CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 2456699998665443332 122578899999997 556666 59999999999876
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.80 E-value=3.9e-06 Score=86.52 Aligned_cols=188 Identities=7% Similarity=-0.025 Sum_probs=127.0
Q ss_pred CeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe
Q 005352 356 EILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 356 ~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 433 (701)
......|++++ .+++...++.|..||..+++.. .+.....+.+++|.| +++++++. . ..|.+||..+++...+.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKIS-DSKQLIAS-D-DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEE-TTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeC-CCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence 45678999974 6666667899999999887643 345567899999999 88776654 3 45999999888765444
Q ss_pred cC-----CCcEEEEEEeeCCCeEEEEec------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 434 DI-----RQIVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 434 ~~-----~~~i~~i~~sp~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
.. ...+..++++|+|+.+++... .+.|..++ +++.... . . ......+++|+| +++.+
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~---~-~-----~~~~~~~i~~s~-dg~~l 193 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL---F-A-----DISIPNSICFSP-DGTTG 193 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE---E-E-----EESSEEEEEECT-TSCEE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe---e-C-----CCcccCCeEEcC-CCCEE
Confidence 32 135889999999986655432 24555555 3433211 0 0 112467899999 56555
Q ss_pred -EEEECCCcEEEEeCC--cc-c----eeeec-ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 503 -MVSCADSQVRILQGP--NV-I----GKYKG-LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 503 -~~~s~dg~I~iwd~~--~~-~----~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
++.+.++.|.+|+.. +. . ..+.. ......+..++++++|.++++...++.|.+|+..
T Consensus 194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred EEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 444567899999974 32 1 12211 1133456789999999988877777899999873
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.71 E-value=3.4e-06 Score=88.72 Aligned_cols=180 Identities=9% Similarity=0.040 Sum_probs=119.5
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCCeE------EEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVT------CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~------~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 438 (701)
++.++.++.++.|..+|..+++.+..+.....+. .... .+..++.+..++.|..+|..+++.+-......+
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~ 219 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQA 219 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence 4578888899999999999999888876443332 2222 245677788899999999999987744332211
Q ss_pred E-----E---EEEEee--CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 439 V-----T---AVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 439 i-----~---~i~~sp--~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
. . .+...| .+..+++++.++.+..+|..+++....... .....+.. .+..+++++.+
T Consensus 220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~----------~~~~~~~~---~~~~l~~~~~~ 286 (376)
T 3q7m_A 220 TGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL----------GSVNDFIV---DGNRIYLVDQN 286 (376)
T ss_dssp ----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC----------CCEEEEEE---ETTEEEEEETT
T ss_pred CCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC----------CCCCCceE---ECCEEEEEcCC
Confidence 0 0 011111 356788888899999999998876543221 12333333 35678888899
Q ss_pred CcEEEEeCCccceeeeccc-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 509 SQVRILQGPNVIGKYKGLR-RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+.|..+|..+......... ....+..... .+..|+.++.+|.|+++|..+++
T Consensus 287 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 287 DRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp CCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred CeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 9999999887665554321 1122222233 35688899999999999998886
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.68 E-value=2e-06 Score=87.76 Aligned_cols=198 Identities=12% Similarity=0.083 Sum_probs=130.4
Q ss_pred CCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
..+..+..+........|++++ .+++...++.|..|+. +++......+...+..+++++ +++++++...++.|.+|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEE
Confidence 3445555566678899999988 5667777899999998 454333333667789999999 88877666566789999
Q ss_pred eCCCCcEEEEecC-----CCcEEEEEEeeCCCeEEE----Eec-------------CCcEEEEECCCCeeeeeeeEEeec
Q 005352 423 AVLSCHVVDWVDI-----RQIVTAVCYRPDGQGGIV----GSM-------------MGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 423 d~~~~~~~~~~~~-----~~~i~~i~~sp~g~~l~~----gs~-------------dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
+.. ++...+... ...+..++++|+|+.+++ |.. .+.|..||..+++.....
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------ 185 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------ 185 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE------
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe------
Confidence 986 554433221 134667999999987776 332 245777777555543211
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECC------CcEEEEeCCccc----eeeecccCCCCeEEEEEecCCCEEEEEeCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCAD------SQVRILQGPNVI----GKYKGLRRSGNQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~d------g~I~iwd~~~~~----~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D 550 (701)
.......++|+| ++..|+++... +.|++|++.... ..+... .......++++++|++.++ +.+
T Consensus 186 ----~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~-~~~ 258 (305)
T 3dr2_A 186 ----DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSS-SGT 258 (305)
T ss_dssp ----EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEEC-CSS
T ss_pred ----cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEe-cCC
Confidence 113467899999 67766666554 789999875321 111111 2334567889999995554 444
Q ss_pred CcEEEEeCC
Q 005352 551 SNVYMWNCI 559 (701)
Q Consensus 551 g~I~iWd~~ 559 (701)
.|++|+.+
T Consensus 259 -gv~~~~~~ 266 (305)
T 3dr2_A 259 -GVCVFDSD 266 (305)
T ss_dssp -EEEEECTT
T ss_pred -cEEEECCC
Confidence 49999874
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.63 E-value=2.1e-06 Score=98.44 Aligned_cols=231 Identities=7% Similarity=0.036 Sum_probs=138.8
Q ss_pred eeecCcccccc-----ccccceEEEEEccCccchhhhcccCceeccCCCcE--EEEEEccCCCEEEEEeCCCc-------
Q 005352 208 RVRLNEEDAMF-----CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSI--LTMKFSPDGQYLASAGDDGV------- 273 (701)
Q Consensus 208 ~~~~~~~~~~~-----~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I--~~l~fspdg~~Lasgs~Dg~------- 273 (701)
+++++++.++. |+....|+||++...... ..+...+ ..++|+ ||+.|+.+..+..
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~----------~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL----------ETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE----------EEEEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCC----------ccccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 45666666664 344468999988654311 1121222 467899 9999999888743
Q ss_pred ------EEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCe
Q 005352 274 ------VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPL 347 (701)
Q Consensus 274 ------I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (701)
|.+|++.+..... ..+
T Consensus 204 ~~~~~~v~~~~lgt~~~~~----------------------------------------------------------~~v 225 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDD----------------------------------------------------------RLV 225 (693)
T ss_dssp -CCCCEEEEEETTSCGGGC----------------------------------------------------------EEE
T ss_pred cCCCcEEEEEECCCCcccc----------------------------------------------------------eEE
Confidence 7777765542100 001
Q ss_pred EEEcC-CccCeEEEEEecCC-eE-EEEEC---CCcEEEEECCCC--eeeeeecCCCCeEEEEEeeCCCCEEE-EEEcC--
Q 005352 348 HEFHG-HSGEILDLSWSKNN-YL-LSASI---DKTVRLWRVGND--HCLRVFPHSNYVTCVHFNPVDDNYFI-SGSID-- 416 (701)
Q Consensus 348 ~~~~~-h~~~I~~l~~s~~~-~l-~s~s~---dg~I~iWd~~~~--~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~d-- 416 (701)
..... |...+..+.|+|++ +| ++.+. ...|.++|+.++ +......+....... |++ ++..|+ ....+
T Consensus 226 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~-~g~~l~~~t~~~~~ 303 (693)
T 3iuj_A 226 FGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDN-KGSTLYLLTNRDAP 303 (693)
T ss_dssp ESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEE-ETTEEEEEECTTCT
T ss_pred EecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Eec-cCCEEEEEECCCCC
Confidence 11122 34457788999999 44 44443 258999999776 334334455555554 556 455544 44433
Q ss_pred -CcEEEEeCCCCcE---EEEecCCCcEEEEEEeeCCCeEEEEecCC---cEEEEECCCCeeeeeeeEEeecccCCCCCCe
Q 005352 417 -GKVRIWAVLSCHV---VDWVDIRQIVTAVCYRPDGQGGIVGSMMG---DCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (701)
Q Consensus 417 -g~v~iwd~~~~~~---~~~~~~~~~i~~i~~sp~g~~l~~gs~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i 489 (701)
+.|..+|+.++.. ..+..+...+. .|+++++.|+....++ .|++|++....... + .......+
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~---l-----~~p~~~~~ 373 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVRE---V-----ALPGLGSV 373 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEE---E-----CCSSSSEE
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEE---e-----ecCCCceE
Confidence 5799999987654 44555655554 8999999888776544 68899987554321 1 11122446
Q ss_pred eEEEEecCCCCEEEEEEC---CCcEEEEeCCcc
Q 005352 490 TGFQFLPQDSSKVMVSCA---DSQVRILQGPNV 519 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~---dg~I~iwd~~~~ 519 (701)
..+.+++++..++++.+. -+.|+.||+.+.
T Consensus 374 ~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 374 SGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 667777744444444433 278999998643
No 226
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.62 E-value=2.5e-08 Score=105.12 Aligned_cols=202 Identities=12% Similarity=0.040 Sum_probs=107.7
Q ss_pred CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccc
Q 005352 261 DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVF 340 (701)
Q Consensus 261 dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (701)
++..|++++.||.|..||..+++.+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------------------------------------- 37 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------------------------------------- 37 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------------------------
Confidence 577899999999999999999875544321
Q ss_pred cccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCC--CCeEE-EEEeeCCCCEEEEEEcC
Q 005352 341 RILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHS--NYVTC-VHFNPVDDNYFISGSID 416 (701)
Q Consensus 341 ~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~--~~V~~-l~f~p~~~~~l~sgs~d 416 (701)
+.+.+..+..++ .+++++.|+.|+.||..+++.+..+... ..+.+ ..+. .+..+++++.+
T Consensus 38 --------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~d 101 (369)
T 2hz6_A 38 --------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQ 101 (369)
T ss_dssp --------------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEE
T ss_pred --------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCC
Confidence 111122223445 6777789999999999999877665421 11100 0111 34567788889
Q ss_pred CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 417 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
+.|+.||..+++.+....... ...++|++..+++++.++.|+.||..+++.......... ....+.+
T Consensus 102 g~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~----------~~~~~~~ 168 (369)
T 2hz6_A 102 DIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY----------AASLPED 168 (369)
T ss_dssp EEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE----------CCBCCCC
T ss_pred CEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc----------cCccccC
Confidence 999999999998774443332 234567888999999999999999998876544332111 1111111
Q ss_pred C--CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEE-EEEecCCC
Q 005352 497 Q--DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLS-ACFTSDGK 542 (701)
Q Consensus 497 ~--~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~-l~~s~dg~ 542 (701)
+ ....+++++.++.|+.||..+........ ...++.. ..++++|.
T Consensus 169 ~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 169 DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGL 216 (369)
T ss_dssp CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSC
T ss_pred CccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCce
Confidence 0 11567788999999999998766555433 2334433 33444554
No 227
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.61 E-value=1.9e-06 Score=89.63 Aligned_cols=201 Identities=10% Similarity=0.062 Sum_probs=128.8
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeC-----CCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 247 QAHDGSILTMKFSPDGQYLASAGD-----DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~-----Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
.+|-..+..|+|+++|+++++-.. ++.|.+||+.+++.+..+.++...
T Consensus 63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~--------------------------- 115 (343)
T 2qe8_A 63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI--------------------------- 115 (343)
T ss_dssp CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT---------------------------
T ss_pred ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh---------------------------
Confidence 356778999999999976665433 578999999888755544322100
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC-Ce-EEEEE---CCCcEEEEECCCCeeeeeecC---
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN-NY-LLSAS---IDKTVRLWRVGNDHCLRVFPH--- 393 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~~-l~s~s---~dg~I~iWd~~~~~~~~~~~h--- 393 (701)
..+...+..+++.++ +. +++.. .++.|.+||+.+++..+.+..
T Consensus 116 -----------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 116 -----------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp -----------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred -----------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 012344578888875 44 44444 578899999987776554421
Q ss_pred ---------------------------CCCeEEEEEeeCCCCEEEEEEcCC-cEEEEeCC---CCc--------EEEEec
Q 005352 394 ---------------------------SNYVTCVHFNPVDDNYFISGSIDG-KVRIWAVL---SCH--------VVDWVD 434 (701)
Q Consensus 394 ---------------------------~~~V~~l~f~p~~~~~l~sgs~dg-~v~iwd~~---~~~--------~~~~~~ 434 (701)
...+..|+|+| +++.|+.+...+ .|..++.. .+. .+....
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 245 (343)
T 2qe8_A 167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS 245 (343)
T ss_dssp TSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE
T ss_pred ccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc
Confidence 02368899999 888888887666 44444421 111 011223
Q ss_pred CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 435 ~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
.......++++++|..+++...++.|.+||..+++.... .. .......+++++.+ ++.++++.+..+.+.
T Consensus 246 ~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~----~~---~~~~~~p~~va~~~-~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 246 EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLL----VT---DEKLSWTDSFNFGS-DGYLYFDCNQLHHSA 315 (343)
T ss_dssp ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEE----EE---CGGGSCEEEEEECT-TSCEEEEECCGGGSG
T ss_pred cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEE----EE---CCceecCCeeEECC-CCcEEEEeCcccccc
Confidence 344566799999999888888899999999855543211 11 11235678999988 566666666544443
No 228
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.61 E-value=5.8e-06 Score=81.57 Aligned_cols=202 Identities=6% Similarity=-0.050 Sum_probs=134.5
Q ss_pred cEEEEEEccCCCEEEEEeC--CCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 252 SILTMKFSPDGQYLASAGD--DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~--Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
....|.|++++.+.++.+. ++.|++.|+.+++.+..+.+..
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~------------------------------------- 64 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD------------------------------------- 64 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-------------------------------------
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-------------------------------------
Confidence 3679999998765565554 5799999999988665543211
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCC-CCeEEEEEeeCCCC
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHS-NYVTCVHFNPVDDN 408 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~-~~V~~l~f~p~~~~ 408 (701)
+ .....+++..+...++.-.++.+.++|..+.+.+..+... .. ...+++ +++
T Consensus 65 -----------------------~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~-Dg~ 117 (266)
T 2iwa_A 65 -----------------------S-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLAT-DGK 117 (266)
T ss_dssp -----------------------T-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEE-CSS
T ss_pred -----------------------C-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEE-CCC
Confidence 1 1112345543224444556889999999999999998754 32 234556 666
Q ss_pred EEEEEEcCCcEEEEeCCCCcEEEEecCC------CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee---
Q 005352 409 YFISGSIDGKVRIWAVLSCHVVDWVDIR------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH--- 479 (701)
Q Consensus 409 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~------~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~--- 479 (701)
.++++..++.|.++|..+.+.+..+... ..++.+.|. +|...+....++.|.+.|..+++......+.-.
T Consensus 118 ~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~ 196 (266)
T 2iwa_A 118 ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKK 196 (266)
T ss_dssp SEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHH
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccc
Confidence 6666667889999999998877554422 136778888 675444444578999999999886544332100
Q ss_pred --cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 480 --SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 480 --~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
...........+++|.|+...+++++...+.|.+.++..
T Consensus 197 ~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 197 LIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp HHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred cccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 011122346789999996556667777788998888654
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.59 E-value=2.7e-06 Score=96.76 Aligned_cols=187 Identities=7% Similarity=-0.000 Sum_probs=125.6
Q ss_pred CCcEEEEECCCCeeeeeecCCCC---------------------------------eEEEEEeeCCCCEEEEEEcCC---
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSNY---------------------------------VTCVHFNPVDDNYFISGSIDG--- 417 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~~---------------------------------V~~l~f~p~~~~~l~sgs~dg--- 417 (701)
++.|+.+|..+++.+..+..... ...++++| +.+.++.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 68999999999999887752111 13577888 777888777664
Q ss_pred ----------------cEEEEeCCCCcEEEEec---CC-------CcEEEEEEeeCC---CeEEEEecCCcEEEEECCCC
Q 005352 418 ----------------KVRIWAVLSCHVVDWVD---IR-------QIVTAVCYRPDG---QGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 418 ----------------~v~iwd~~~~~~~~~~~---~~-------~~i~~i~~sp~g---~~l~~gs~dg~v~i~d~~~~ 468 (701)
.|..+|..+++.+-.+. +. ....-+....+| ..+++++.+|.++++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 49999999998874332 11 123333444577 68899999999999999999
Q ss_pred eeeeeeeEEeecc---cCCCC------------------------CCeeEEEEecCCCCEEEEEEC--------------
Q 005352 469 HLELDAEICVHSK---KKAPC------------------------KRITGFQFLPQDSSKVMVSCA-------------- 507 (701)
Q Consensus 469 ~~~~~~~~~~~~~---~~~~~------------------------~~i~~l~~~p~~~~~l~~~s~-------------- 507 (701)
++.....+..... ..... ..-..++++| +..++++...
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~ 426 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEF 426 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeeccccccc
Confidence 8765433211000 00000 0112567888 4556665433
Q ss_pred -----------------------------CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 508 -----------------------------DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 508 -----------------------------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.+.|..||..+........ +..++....+..++.+++.++.||.+++||.
T Consensus 427 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 427 NQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp TCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred ccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 1679999998766655543 3334455567778889999999999999999
Q ss_pred CCCCC
Q 005352 559 IGHEE 563 (701)
Q Consensus 559 ~~~~~ 563 (701)
.+++.
T Consensus 506 ~tG~~ 510 (677)
T 1kb0_A 506 ATGEK 510 (677)
T ss_dssp TTCCE
T ss_pred CCCce
Confidence 99884
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.58 E-value=6.9e-09 Score=109.38 Aligned_cols=180 Identities=8% Similarity=0.051 Sum_probs=102.3
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC--CcEE-E
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR--QIVT-A 441 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~i~-~ 441 (701)
++.+++++.|+.|+.||..+++.+..+.. +.+.+..+.. ++..+++++.||.|+.||..+++.+...... ..+. +
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 44899999999999999999999988876 5565555555 6777888889999999999888765332211 1110 0
Q ss_pred EEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce
Q 005352 442 VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG 521 (701)
Q Consensus 442 i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~ 521 (701)
..+. .+..+++++.++.++.||..+++........ . ...++| ++..+++++.++.|+.||..+...
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~---------~---~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA---------F---ADSLSP-STSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC---------C---cccccc-cCCEEEEEecCCEEEEEECCCCCE
Confidence 0111 3456788888999999999988765432211 0 134456 677888999999999999876544
Q ss_pred eeecccCCCCeEEEEEecCC---CEEEEEeCCCcEEEEeCCCCC
Q 005352 522 KYKGLRRSGNQLSACFTSDG---KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 522 ~~~~~~~~~~v~~l~~s~dg---~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
....... .....+++.+. ..+++++.||.|+.||..+++
T Consensus 153 ~W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 153 RWNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp CCEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred EEeEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 3332111 01122233332 567778899999999999887
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.58 E-value=2.6e-06 Score=97.23 Aligned_cols=188 Identities=12% Similarity=0.059 Sum_probs=123.7
Q ss_pred CCCcEEEEECCCCeeeeeecCC--C------------------------------CeEEEEEeeCCCCEEEEEEcCCc--
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHS--N------------------------------YVTCVHFNPVDDNYFISGSIDGK-- 418 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~--~------------------------------~V~~l~f~p~~~~~l~sgs~dg~-- 418 (701)
.++.|+.||..+++.+..+... . ....++++| +..+++.+..++.
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w 259 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLW 259 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCcc
Confidence 3689999999999988776521 0 012578888 7788888887763
Q ss_pred -----------------EEEEeCCCCcEEEEec---CC-------CcEEEEEEeeCCC---eEEEEecCCcEEEEECCCC
Q 005352 419 -----------------VRIWAVLSCHVVDWVD---IR-------QIVTAVCYRPDGQ---GGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 419 -----------------v~iwd~~~~~~~~~~~---~~-------~~i~~i~~sp~g~---~l~~gs~dg~v~i~d~~~~ 468 (701)
|..+|..+++.+-... +. .++.......+|+ .++.++.+|.++++|..++
T Consensus 260 ~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG 339 (689)
T 1yiq_A 260 DPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG 339 (689)
T ss_dssp CHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred ccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence 9999999998874332 11 1222233334665 7889999999999999999
Q ss_pred eeeeeeeEEeecc--------------------cCC-----------CCCCeeEEEEecCCCCEEEEEEC----------
Q 005352 469 HLELDAEICVHSK--------------------KKA-----------PCKRITGFQFLPQDSSKVMVSCA---------- 507 (701)
Q Consensus 469 ~~~~~~~~~~~~~--------------------~~~-----------~~~~i~~l~~~p~~~~~l~~~s~---------- 507 (701)
++.....+..... ... .......++++| +..++++...
T Consensus 340 ~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~ 418 (689)
T 1yiq_A 340 ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIP 418 (689)
T ss_dssp CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEEECCS
T ss_pred CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEeccccceeeeecc
Confidence 8763322110000 000 001122367888 4455555422
Q ss_pred -----------------------------------CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 508 -----------------------------------DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 508 -----------------------------------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
++.|+.||+.+.........+ .+.....+...+.+++.|+.||.
T Consensus 419 ~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~ 497 (689)
T 1yiq_A 419 EAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGR 497 (689)
T ss_dssp SCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSE
T ss_pred ccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCc
Confidence 367999999877666554322 33334466678889999999999
Q ss_pred EEEEeCCCCCC
Q 005352 553 VYMWNCIGHEE 563 (701)
Q Consensus 553 I~iWd~~~~~~ 563 (701)
|+.||.+++++
T Consensus 498 l~a~D~~tG~~ 508 (689)
T 1yiq_A 498 VIAYAADTGEK 508 (689)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCcc
Confidence 99999999984
No 232
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.58 E-value=1.1e-05 Score=79.46 Aligned_cols=199 Identities=7% Similarity=-0.013 Sum_probs=133.4
Q ss_pred CeEEEEEecCCeEE-EEEC--CCcEEEEECCCCeeeeeecCCC--CeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 356 EILDLSWSKNNYLL-SASI--DKTVRLWRVGNDHCLRVFPHSN--YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 356 ~I~~l~~s~~~~l~-s~s~--dg~I~iWd~~~~~~~~~~~h~~--~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
....+.|++++.|+ +.+. ++.|.+.|+.+++.+..+.... ....+++. .+.++++.-.++.+.++|..+.+++
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 36899999988444 4433 5899999999999998876333 33345554 3344555556889999999999888
Q ss_pred EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc
Q 005352 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (701)
Q Consensus 431 ~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~ 510 (701)
..+... ......++++|+.++++..++.|.++|..+.+.......... ......++.+.|. ++..++....++.
T Consensus 100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~---~~p~~~~nele~~--dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN---GHRVIRLNELEYI--NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET---TEECCCEEEEEEE--TTEEEEEETTSSE
T ss_pred EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC---CcccccceeEEEE--CCEEEEecCCCCe
Confidence 766544 112344667899888888889999999988765443322211 1122346677777 3555554446889
Q ss_pred EEEEeCCccce--eeeccc-----------CCCCeEEEEEecCCCEE-EEEeCCCcEEEEeCCCCC
Q 005352 511 VRILQGPNVIG--KYKGLR-----------RSGNQLSACFTSDGKHI-VSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 511 I~iwd~~~~~~--~~~~~~-----------~~~~v~~l~~s~dg~~l-~sgs~Dg~I~iWd~~~~~ 562 (701)
|.+.|..+... .+.... .....+.++|+|+++.| +++...+.|+.-++....
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99999876433 222210 12356899999998655 556677889999887653
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.57 E-value=6.4e-05 Score=74.73 Aligned_cols=197 Identities=7% Similarity=-0.002 Sum_probs=125.2
Q ss_pred cCeEEEEEecCC-eEE-EEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 355 GEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~-s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
..+..++|.+++ .|+ +-..++.|..+++........+. .......++++|..+.++++-...+.|.++++.......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 356789999865 444 44557899999997765444443 225789999998334445555556789999987544333
Q ss_pred EecC-CCcEEEEEEeeCCCeEEEEec---CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 432 WVDI-RQIVTAVCYRPDGQGGIVGSM---MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 432 ~~~~-~~~i~~i~~sp~g~~l~~gs~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
.... ......++++|++..|+++.. .+.|..+++....... +. ........++++.++++.++++-..
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~-----~~---~~~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI-----LA---QDNLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE-----EE---CTTCSCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE-----EE---ECCCCCCcEEEEcCCCCEEEEEECC
Confidence 3322 256789999997766666654 3678888886543211 11 0122457899999954555566666
Q ss_pred CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCC
Q 005352 508 DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSA-GEDSNVYMWNCIGHE 562 (701)
Q Consensus 508 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~~~ 562 (701)
.+.|.++|.......... ........++.. +..|+.+ ...+.|..++..+++
T Consensus 188 ~~~I~~~~~~g~~~~~~~-~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVL-EGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp TTEEEEEETTEEEEEEEE-ECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE
T ss_pred CCEEEEEecCCCceEEEe-cCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCC
Confidence 789999998743222111 122344666654 4455544 456899999988765
No 234
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.54 E-value=5.8e-07 Score=93.78 Aligned_cols=257 Identities=8% Similarity=-0.035 Sum_probs=158.7
Q ss_pred cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE----------cCCcEEEEeCCCCcEEEEecCC--------C
Q 005352 376 TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS----------IDGKVRIWAVLSCHVVDWVDIR--------Q 437 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs----------~dg~v~iwd~~~~~~~~~~~~~--------~ 437 (701)
+|.++|..+++.+..+.-.... .+.++| ++++++++. .++.|.+||+.+++.+..+... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999733333 799999 888888776 3688999999999988766432 3
Q ss_pred cEEEEEEeeCCCeEEEEec--CCcEEE--EECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 438 IVTAVCYRPDGQGGIVGSM--MGDCRF--YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 438 ~i~~i~~sp~g~~l~~gs~--dg~v~i--~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
....++++|||++++++.. ...+.+ +|+.+ . ..+... .+ +.+.|.....+++.+.|+.+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v---~~i~v~-----~~-----~~~~p~g~~~~~~~~~dg~~~~ 189 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--D---QLTKSA-----SC-----FHIHPGAAATHYLGSCPASLAA 189 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--E---EEEECS-----SC-----CCCEEEETTEEECCCCTTSCEE
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--c---eEEECC-----Cc-----eEEccCCCeEEEEEcCCCCEEE
Confidence 4668999999999999875 456888 88866 1 111110 00 1233444556677778888888
Q ss_pred EeCCc-----cceeee----cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceE
Q 005352 514 LQGPN-----VIGKYK----GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASI 584 (701)
Q Consensus 514 wd~~~-----~~~~~~----~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (701)
.|... ...... ......+. . ++++..++..+. +.|.+.|+.+....... .... ......
T Consensus 190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~------~~~~-~~~~~~ 257 (368)
T 1mda_H 190 SDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKA------AIDG-NESGRK 257 (368)
T ss_dssp EECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEEC------CCCS-SCTHHH
T ss_pred EECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEE------EEEe-cccccc
Confidence 88765 211100 11122333 3 677776666666 99999998654311000 0000 000000
Q ss_pred EecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccC---C-----CCcccCCCCccCCCCccccccccch
Q 005352 585 AIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFES---F-----PKGCATWPEEKLPALSQLSSASALH 656 (701)
Q Consensus 585 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s---~-----d~~~~~W~~~~~~~~~~~~~~~~~~ 656 (701)
+..|. -.....+.++|++ ...|++.. . ...+.++|..+...+.+++..
T Consensus 258 ~~~~~-----------------p~g~~~v~~s~dg---~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---- 313 (368)
T 1mda_H 258 ADNFR-----------------SAGFQMVAKLKNT---DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---- 313 (368)
T ss_dssp HTTEE-----------------ECSSSCEEEETTT---TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----
T ss_pred ccccc-----------------cCcceeeEEcCCC---CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----
Confidence 00000 0011124566762 23333322 1 234558999888888888655
Q ss_pred hhhhhhhhcccccccccCCCcc-EEEEec-CCCeEeEEee
Q 005352 657 KSQYKFLKSSCLCTTSSHAWGL-VIVTAG-WDGRIRSFLN 694 (701)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~g~-~ivTgg-~DG~Irvw~~ 694 (701)
...+.++++++ |+ ++++.. .++.|.+++.
T Consensus 314 --------~~p~gi~~s~D-g~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 314 --------HDSDAIIAAQD-GASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp --------EEECEEEECCS-SSCEEEEEETTTTEEEEEES
T ss_pred --------CCcceEEECCC-CCEEEEEccCCCCeEEEEEC
Confidence 24678888998 65 788888 5999999985
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.53 E-value=2.9e-06 Score=92.30 Aligned_cols=186 Identities=11% Similarity=0.024 Sum_probs=119.4
Q ss_pred CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCC------------------------------------
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG------------------------------------ 417 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg------------------------------------ 417 (701)
++.+.+.|..+.+.+.++.-.+....++++| +++++++.+.+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred CceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 4578899999988888877444567788888 888888877543
Q ss_pred --cEEEEeCCC--CcE-EEEecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeee----eeeEEeecccCCCCC
Q 005352 418 --KVRIWAVLS--CHV-VDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLEL----DAEICVHSKKKAPCK 487 (701)
Q Consensus 418 --~v~iwd~~~--~~~-~~~~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~----~~~~~~~~~~~~~~~ 487 (701)
.|.+.|..+ ++. +..+.......++.++|||+++++++ .+.+|.+||+.+.+... ........ ......
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~-~v~vG~ 331 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA-EPELGL 331 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE-CCBCCS
T ss_pred ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE-EcCCCC
Confidence 467777776 434 44555555677899999999888876 47889999998542100 00000000 122335
Q ss_pred CeeEEEEecCCCCEEEEEECCCcEEEEeCCccc---------eee-ecccCCCCe-----EEEEEecCCCEEEEEeC---
Q 005352 488 RITGFQFLPQDSSKVMVSCADSQVRILQGPNVI---------GKY-KGLRRSGNQ-----LSACFTSDGKHIVSAGE--- 549 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~---------~~~-~~~~~~~~v-----~~l~~s~dg~~l~sgs~--- 549 (701)
....++|+| ++..+++...|++|.+||+.... ... +...|-.+- ..+.++|||++|+++..
T Consensus 332 gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk 410 (595)
T 1fwx_A 332 GPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSK 410 (595)
T ss_dssp CEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred CcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCc
Confidence 678899999 55555566669999999976522 111 111121111 12235799999999853
Q ss_pred CCcE----------EEEeCCCCC
Q 005352 550 DSNV----------YMWNCIGHE 562 (701)
Q Consensus 550 Dg~I----------~iWd~~~~~ 562 (701)
|+.+ .++|+.+++
T Consensus 411 dr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 411 DRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TSSCCCCSSCCEEEEEEECSSSS
T ss_pred cccccCCCCCCCcceEEEcCCCc
Confidence 4432 888986655
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.50 E-value=9.1e-06 Score=85.37 Aligned_cols=232 Identities=14% Similarity=0.186 Sum_probs=141.2
Q ss_pred cccccc-ccccceEEEEEccCccch--hhhcccCceec--cCCCcEEEEEEccCCCEEEEEeCC------CcEEEEEeec
Q 005352 213 EEDAMF-CSKVQRVKVYHCKKRSKE--LSALYKGQEIQ--AHDGSILTMKFSPDGQYLASAGDD------GVVRLWQVVE 281 (701)
Q Consensus 213 ~~~~~~-~~~d~~v~vw~~~~~~~~--~~~~~~~~~l~--~H~~~I~~l~fspdg~~Lasgs~D------g~I~iWd~~~ 281 (701)
..++++ +-.+++|.|+|....... +.+.....++. .....-..+..+|+| +++++..+ |.|.+.|..+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 344444 677899999998643221 11111101111 111245567888999 77776555 6799999888
Q ss_pred CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE
Q 005352 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (701)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 361 (701)
.+.+.++..... ...--.++.
T Consensus 174 ~~v~~~~~~~~~-----------------------------------------------------------~~~~~Yd~~ 194 (462)
T 2ece_A 174 FEPLGKWEIDRG-----------------------------------------------------------DQYLAYDFW 194 (462)
T ss_dssp CCEEEECCSBCT-----------------------------------------------------------TCCCCCCEE
T ss_pred CeEEEEEccCCC-----------------------------------------------------------CccccceEE
Confidence 776655532211 011223577
Q ss_pred EecCC-eEEEEE-------------------CCCcEEEEECCCCeeeeeecCC---CCeEEEEE--eeCCCCEEEEEE--
Q 005352 362 WSKNN-YLLSAS-------------------IDKTVRLWRVGNDHCLRVFPHS---NYVTCVHF--NPVDDNYFISGS-- 414 (701)
Q Consensus 362 ~s~~~-~l~s~s-------------------~dg~I~iWd~~~~~~~~~~~h~---~~V~~l~f--~p~~~~~l~sgs-- 414 (701)
|+|++ .++++. ...+|.+||+.+++.+.++... .....+.| +| +++++++++
T Consensus 195 ~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~ 273 (462)
T 2ece_A 195 WNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-TKLMGFINMVV 273 (462)
T ss_dssp EETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST-TCCEEEEEEEE
T ss_pred ECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC-CCCEEEEEEee
Confidence 88888 666663 3789999999999888888743 34556666 88 888877666
Q ss_pred ----cCCcEEEEeCCCCcE-----EEEecC----------------CCcEEEEEEeeCCCeEEEEec-CCcEEEEECCCC
Q 005352 415 ----IDGKVRIWAVLSCHV-----VDWVDI----------------RQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDN 468 (701)
Q Consensus 415 ----~dg~v~iwd~~~~~~-----~~~~~~----------------~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~ 468 (701)
.+++|.+|....++. +..... ...+..|.++|||++|+++.. .+.|.+||+...
T Consensus 274 ~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 274 SLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp ETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred eccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 566887766554421 111110 245788999999999998876 688999998633
Q ss_pred -eeeeeeeEEeeccc--------CCCCCCeeEEEEecCCCCEEEEEE
Q 005352 469 -HLELDAEICVHSKK--------KAPCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 469 -~~~~~~~~~~~~~~--------~~~~~~i~~l~~~p~~~~~l~~~s 506 (701)
...+...+...... ......-..++++| ++++|+++.
T Consensus 354 ~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 354 FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 33333333322110 00112356788999 677777665
No 237
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.50 E-value=3.4e-06 Score=95.99 Aligned_cols=192 Identities=6% Similarity=-0.088 Sum_probs=120.1
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCC------CCeEEEEEeeCCCCEEEEEEc------CCcEEEEeCCCCcEEEE
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHS------NYVTCVHFNPVDDNYFISGSI------DGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~------~~V~~l~f~p~~~~~l~sgs~------dg~v~iwd~~~~~~~~~ 432 (701)
++.++.++.|+.|..+|..+++.+..+... ..+..--.. .+..++.++. ++.|+.||..+++.+-.
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 457888899999999999999998887633 122221111 2345555543 68999999999988733
Q ss_pred ecCCC---------------------------------cEEEEEEeeCCCeEEEEecCC-------------------cE
Q 005352 433 VDIRQ---------------------------------IVTAVCYRPDGQGGIVGSMMG-------------------DC 460 (701)
Q Consensus 433 ~~~~~---------------------------------~i~~i~~sp~g~~l~~gs~dg-------------------~v 460 (701)
..... ....++++|++..+++++.++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 32111 113578899999999988764 49
Q ss_pred EEEECCCCeeeeeeeEEeeccc-CCCCCCeeEEEEecCCC---CEEEEEECCCcEEEEeCCccceeeecccC--------
Q 005352 461 RFYNVSDNHLELDAEICVHSKK-KAPCKRITGFQFLPQDS---SKVMVSCADSQVRILQGPNVIGKYKGLRR-------- 528 (701)
Q Consensus 461 ~i~d~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~p~~~---~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-------- 528 (701)
..+|..+++.....+...+... ........-+.... ++ ..+++++.+|.|+++|..+..........
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~ 364 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY 364 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence 9999999987655432211100 00011222223333 44 67888999999999998765543322100
Q ss_pred ---CCCe------------------------EEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 529 ---SGNQ------------------------LSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 529 ---~~~v------------------------~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
...+ ..++++|++.++++...+-...+|...
T Consensus 365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 422 (677)
T 1kb0_A 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDK 422 (677)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECT
T ss_pred CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccc
Confidence 0001 157889999999888766555555443
No 238
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.48 E-value=2.2e-05 Score=80.60 Aligned_cols=198 Identities=10% Similarity=-0.011 Sum_probs=119.1
Q ss_pred CeEEEEEec-CCeEEEEECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEeeCCCCEEEEEEc--------------
Q 005352 356 EILDLSWSK-NNYLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSI-------------- 415 (701)
Q Consensus 356 ~I~~l~~s~-~~~l~s~s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~-------------- 415 (701)
.+..|++.+ ++.|+.+...+.|..+|..++....... .......+++.+.+++++++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~ 160 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT 160 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence 467899997 6777777666668888877654322111 12357888888634555555322
Q ss_pred ---CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeE
Q 005352 416 ---DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG 491 (701)
Q Consensus 416 ---dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~ 491 (701)
++.|..||..+++.......-.....++++|+++.|+++ +..+.|..|++....... ..... . . .. ...
T Consensus 161 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~-~-~---~g-P~g 233 (322)
T 2fp8_A 161 SDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLV-K-I---PN-PGN 233 (322)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEE-E-C---SS-EEE
T ss_pred cCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEE-e-C---CC-CCC
Confidence 367888998777655443333446679999999877666 556899999987532100 00001 1 1 12 678
Q ss_pred EEEecCCCCEEEEEEC----------CCcEEEEeCCcc-ceeeecccC--CCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 492 FQFLPQDSSKVMVSCA----------DSQVRILQGPNV-IGKYKGLRR--SGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 492 l~~~p~~~~~l~~~s~----------dg~I~iwd~~~~-~~~~~~~~~--~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
+++.+ ++.+.++... .+.|..+|.... ...+..... ...+..+++ .+++++++....+.|..+++
T Consensus 234 i~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 234 IKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp EEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred eEECC-CCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence 88988 5666655544 467888886422 222222111 234666666 46666666667889999998
Q ss_pred CCCC
Q 005352 559 IGHE 562 (701)
Q Consensus 559 ~~~~ 562 (701)
....
T Consensus 312 ~~~~ 315 (322)
T 2fp8_A 312 DKKG 315 (322)
T ss_dssp ----
T ss_pred cccc
Confidence 6544
No 239
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.48 E-value=3.3e-05 Score=75.30 Aligned_cols=186 Identities=8% Similarity=0.028 Sum_probs=122.9
Q ss_pred CeEEEEEecCC-eEEEEECCC--cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 356 EILDLSWSKNN-YLLSASIDK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
....|.|+ ++ ++.+.+.+| .|+++|+.+++.+..+............+..+.+++..-.++.+.+||..+.+.+..
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 34788998 56 666667766 899999999999988875554444333331344444555688999999999998877
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
+..... ...++++++.|+++..++.|.++|..+.+.......... ......++.+.|. ++.+++..-.++.|.
T Consensus 123 i~~~~e--G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~---g~~~~~lNELe~~--~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 123 FNYDGE--GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAH---GEELPELNELEWV--DGEIFANVWQTNKIV 195 (262)
T ss_dssp EECSSC--CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEET---TEECCCEEEEEEE--TTEEEEEETTSSEEE
T ss_pred EECCCC--ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccC---CccccccceeEEE--CCEEEEEEccCCeEE
Confidence 665442 234446888888887788899999998776544332211 1112335556765 455554444688999
Q ss_pred EEeCCcccee--eecc----------cCCCCeEEEEEecCCCEEEEEeC
Q 005352 513 ILQGPNVIGK--YKGL----------RRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 513 iwd~~~~~~~--~~~~----------~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
+.|..+.... +... ......+.++|+|+++.|+..+.
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9998754322 2211 11245689999999887777664
No 240
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.47 E-value=1.3e-05 Score=91.24 Aligned_cols=180 Identities=9% Similarity=0.079 Sum_probs=117.6
Q ss_pred EEEEecCC-eEEEEECCC-------------------cEEEEECCCCeeeeeec---CC-------CCeEEEEEeeCCCC
Q 005352 359 DLSWSKNN-YLLSASIDK-------------------TVRLWRVGNDHCLRVFP---HS-------NYVTCVHFNPVDDN 408 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg-------------------~I~iWd~~~~~~~~~~~---h~-------~~V~~l~f~p~~~~ 408 (701)
.+++.+++ .++.++.++ .|..||..+++.+..++ |. ..+....... ++.
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCc
Confidence 56777765 777777665 39999999999998876 21 1222222222 454
Q ss_pred ---EEEEEEcCCcEEEEeCCCCcEEEEecCCC--c--------------------------------------EEEEEEe
Q 005352 409 ---YFISGSIDGKVRIWAVLSCHVVDWVDIRQ--I--------------------------------------VTAVCYR 445 (701)
Q Consensus 409 ---~l~sgs~dg~v~iwd~~~~~~~~~~~~~~--~--------------------------------------i~~i~~s 445 (701)
.++.++.+|.++++|..+++++....... . -..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78889999999999999998873211110 0 1126888
Q ss_pred eCCCeEEEEec---------------------------------------------CCcEEEEECCCCeeeeeeeEEeec
Q 005352 446 PDGQGGIVGSM---------------------------------------------MGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 446 p~g~~l~~gs~---------------------------------------------dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
|+...+++... +|.|..||+.+++........
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--- 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--- 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES---
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC---
Confidence 98888887632 377999999999876543321
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCC-CCeEEEEEecCCC-EEEEEeC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRS-GNQLSACFTSDGK-HIVSAGE 549 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~-~~v~~l~~s~dg~-~l~sgs~ 549 (701)
..+..-.+.. .+.++++++.|+.|+.||..+.....+..... ....-+.|..+|+ |+++.+.
T Consensus 475 ------~~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 475 ------TIFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp ------SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ------CCccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 1112223444 56789999999999999999877665543222 2223466778886 5555443
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.45 E-value=2.3e-06 Score=93.00 Aligned_cols=186 Identities=15% Similarity=0.126 Sum_probs=127.8
Q ss_pred CC-eEEEE-ECCCcEEEEECCCCeeeeeec--CCCCeEEEEE-e-eCCCCEEEEEE------------------cCCcEE
Q 005352 365 NN-YLLSA-SIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHF-N-PVDDNYFISGS------------------IDGKVR 420 (701)
Q Consensus 365 ~~-~l~s~-s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f-~-p~~~~~l~sgs------------------~dg~v~ 420 (701)
+| +++.. ..+..|.+.|+.+.++.+.+. ....+..+++ . | ++.++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEE
Confidence 66 45444 456679999999999988544 4566888888 4 7 888888875 245799
Q ss_pred EEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCC--------------------------------------cEEE
Q 005352 421 IWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG--------------------------------------DCRF 462 (701)
Q Consensus 421 iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg--------------------------------------~v~i 462 (701)
+.|..+.++...+...+....++++|+|+++++.+.+. .|.+
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 99999998886665544667788999999999988653 2444
Q ss_pred EECCC--CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCccce-----------eeecccC
Q 005352 463 YNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVIG-----------KYKGLRR 528 (701)
Q Consensus 463 ~d~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~~~-----------~~~~~~~ 528 (701)
.|..+ ++.. ...+. -.....++.++| +++++++++ .+.+|.++|..+... ......-
T Consensus 259 ID~~~~~~~~~-~~~Ip-------vg~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 259 VDGRKEASSLF-TRYIP-------IANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp EECSGGGCCSS-EEEEE-------EESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred EeCcccCCcee-EEEEe-------cCCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 45444 1110 00010 012456789999 566655555 589999999885421 1112224
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 529 SGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 529 ~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
......++|+|+|...++.-.|+.|.+||++.
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 45678999999994445566899999999876
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.43 E-value=0.00042 Score=68.71 Aligned_cols=176 Identities=5% Similarity=-0.108 Sum_probs=106.0
Q ss_pred cCeEEEEEecCC-eEE-EEECCCcEEEEECCCCeeeeeecC-CCCeEEEEEeeCCCCEEEEEEc---CCcEEEEeCCCCc
Q 005352 355 GEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFPH-SNYVTCVHFNPVDDNYFISGSI---DGKVRIWAVLSCH 428 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~-s~s~dg~I~iWd~~~~~~~~~~~h-~~~V~~l~f~p~~~~~l~sgs~---dg~v~iwd~~~~~ 428 (701)
.....+++.+++ .|+ +-...+.|.++++........... ......++++| ++..|+.+.. .+.|..+++....
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCC
Confidence 356788999864 444 445567899999875433222322 25678999999 6555555443 3678888886543
Q ss_pred EEEEe-cCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE
Q 005352 429 VVDWV-DIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 429 ~~~~~-~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s 506 (701)
..... ..-.....++++|++..|+++. ..+.|..+++........ .. ......+++.. ++.++++..
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~----~~-----~~~~P~gi~~d--~~~lyva~~ 226 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV----LE-----GLQYPFAVTSY--GKNLYYTDW 226 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE----EE-----CCCSEEEEEEE--TTEEEEEET
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE----ec-----CCCCceEEEEe--CCEEEEEEC
Confidence 22222 2234688999999877666554 567899999975432211 11 11233556543 344555445
Q ss_pred CCCcEEEEeCCccceeeecccC-CCCeEEEEEecCCC
Q 005352 507 ADSQVRILQGPNVIGKYKGLRR-SGNQLSACFTSDGK 542 (701)
Q Consensus 507 ~dg~I~iwd~~~~~~~~~~~~~-~~~v~~l~~s~dg~ 542 (701)
..+.|.++|..+.......... ......+++.|++.
T Consensus 227 ~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 227 KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 5789999998754433322212 22466777877764
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.43 E-value=2.4e-06 Score=87.83 Aligned_cols=180 Identities=14% Similarity=0.048 Sum_probs=109.4
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCC-eEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNY-VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV- 433 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~-V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~- 433 (701)
.+.++...+++.|+.++.+ |..+|. +++.+..+..... .....+. +..+..++.++.|..+|.. ++.....
T Consensus 61 ~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~ 133 (330)
T 3hxj_A 61 IECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKWRFK 133 (330)
T ss_dssp EEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE---TTEEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred cccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEEEEc
Confidence 3455666667766666555 888886 6655544442222 2223332 4567778888999999998 6655333
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
.....+.++...+++. +++++.++.+..||.. ++...... . ....+..+...+ ++. +.+++ +.|..
T Consensus 134 ~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~--~------~~~~~~~~~~d~-~g~-l~v~t--~~l~~ 199 (330)
T 3hxj_A 134 TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK--T------NDAITSAASIGK-DGT-IYFGS--DKVYA 199 (330)
T ss_dssp CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE--C------SSCCCSCCEECT-TCC-EEEES--SSEEE
T ss_pred CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe--c------CCCceeeeEEcC-CCE-EEEEe--CEEEE
Confidence 3334455666666665 6778888999999988 55433221 1 122344555544 344 45555 88999
Q ss_pred EeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 514 LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
+| .+.............+.++...++|. |..++.++.|+.++.
T Consensus 200 ~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~ 242 (330)
T 3hxj_A 200 IN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP 242 (330)
T ss_dssp EC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT
T ss_pred EC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC
Confidence 99 54444444333445677888888875 555667788888873
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.40 E-value=2e-05 Score=80.79 Aligned_cols=186 Identities=13% Similarity=0.033 Sum_probs=116.6
Q ss_pred eEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-Eec
Q 005352 357 ILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVD 434 (701)
Q Consensus 357 I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~ 434 (701)
+.++...+++.++.++.++.|..+|.. ++.+..+. ....+.++.+.+ ++.+++ ++ +.|..+| .+++... ...
T Consensus 139 ~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g~~~~~~~~ 212 (330)
T 3hxj_A 139 YATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDGTEKWNFYA 212 (330)
T ss_dssp CSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTSCEEEEECC
T ss_pred eeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCCcEEEEEcc
Confidence 444555667777788888999999998 77766665 344566777765 666544 44 7899999 6665553 333
Q ss_pred CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 435 ~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
....+.++...++| .|.+++.++.+..++..... .... ... ...+..+.+.+ ...|.+++.++.|..+
T Consensus 213 ~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~~g~~-~~~~--~~~------~~~~~~~~~~~--~g~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 213 GYWTVTRPAISEDG-TIYVTSLDGHLYAINPDGTE-KWRF--KTG------KRIESSPVIGN--TDTIYFGSYDGHLYAI 280 (330)
T ss_dssp SSCCCSCCEECTTS-CEEEEETTTEEEEECTTSCE-EEEE--ECS------SCCCSCCEECT--TSCEEEECTTCEEEEE
T ss_pred CCcceeceEECCCC-eEEEEcCCCeEEEECCCCCE-eEEe--eCC------CCccccceEcC--CCeEEEecCCCCEEEE
Confidence 34557778888776 56667778888888754332 2211 111 11122333432 4578888889899999
Q ss_pred eCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 515 QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|.. .............+.++...++|. |..++.+|.+++......+
T Consensus 281 d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 281 NPD-GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp CTT-SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred CCC-CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 963 332222222445566777777776 5668889999998866543
No 245
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.39 E-value=3.2e-05 Score=75.40 Aligned_cols=187 Identities=10% Similarity=0.006 Sum_probs=123.6
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
-...|.|+ ++.+..+.+.+|.|+++|+.+++.+..+ +..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~--------------------------------------- 94 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG--------------------------------------- 94 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT---------------------------------------
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC---------------------------------------
Confidence 34788887 4677788888999999999998754433 111
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI 411 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~ 411 (701)
...--.+++..+..++..-.++.+.+||..+.+.+.++.....-..++ + ++..|+
T Consensus 95 ----------------------~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~-Dg~~L~ 149 (268)
T 3nok_A 95 ----------------------NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--Y-WNGKLV 149 (268)
T ss_dssp ----------------------TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--E-ETTEEE
T ss_pred ----------------------CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--c-CCCEEE
Confidence 001122444333344445578999999999999999998655444555 4 567777
Q ss_pred EEEcCCcEEEEeCCCCcEEEEecCC------CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee-c--c-
Q 005352 412 SGSIDGKVRIWAVLSCHVVDWVDIR------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH-S--K- 481 (701)
Q Consensus 412 sgs~dg~v~iwd~~~~~~~~~~~~~------~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~-~--~- 481 (701)
.+..++.|.++|..+.+.+..+... ..++.+.|. +|+..+..-.++.|.+.|..+++......+.-. . .
T Consensus 150 vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~ 228 (268)
T 3nok_A 150 RSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAG 228 (268)
T ss_dssp EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTT
T ss_pred EECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccc
Confidence 7777889999999998877554321 235667776 775444444688999999999887654443211 0 0
Q ss_pred -cCCCCCCeeEEEEecCCCCEEEEE
Q 005352 482 -KKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 482 -~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
......-.++|++.|....++++|
T Consensus 229 ~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 229 QVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cccCcCCceEEEEEcCCCCEEEEeC
Confidence 122335679999999655555554
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.34 E-value=6.7e-05 Score=73.12 Aligned_cols=188 Identities=12% Similarity=0.084 Sum_probs=121.5
Q ss_pred EEEEEEccCCCEEEEEeCCC--cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCc
Q 005352 253 ILTMKFSPDGQYLASAGDDG--VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (701)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (701)
...|.|+ ++.+..+.|.+| .|+++|+.+++.+.++.+...
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~------------------------------------- 86 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR------------------------------------- 86 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-------------------------------------
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-------------------------------------
Confidence 4789998 777778888876 899999999986655532210
Q ss_pred cEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEE
Q 005352 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF 410 (701)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l 410 (701)
..--.++...+...+..-.++.+.+||..+.+.+..+.....-..++ + ++..|
T Consensus 87 ------------------------~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~-dg~~L 139 (262)
T 3nol_A 87 ------------------------YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--H-NDQYL 139 (262)
T ss_dssp ------------------------CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--E-CSSCE
T ss_pred ------------------------cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--c-CCCEE
Confidence 01112333322233344468899999999999999998654334444 4 56666
Q ss_pred EEEEcCCcEEEEeCCCCcEEEEecC---C---CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc---
Q 005352 411 ISGSIDGKVRIWAVLSCHVVDWVDI---R---QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK--- 481 (701)
Q Consensus 411 ~sgs~dg~v~iwd~~~~~~~~~~~~---~---~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~--- 481 (701)
+....++.|.++|..+.+.+..+.. . ..++.+.|. +|+..+..-.++.|.+.|..+++......+.-...
T Consensus 140 ~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~ 218 (262)
T 3nol_A 140 IMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG 218 (262)
T ss_dssp EECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC
T ss_pred EEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccc
Confidence 6655678899999999887755433 1 234557776 67555444468899999999988765443321110
Q ss_pred -cCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 482 -KKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 482 -~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
......-.++|++.|+ .+.|++.+.
T Consensus 219 ~~~~~~~vlNGIA~dp~-~~~lfVTGK 244 (262)
T 3nol_A 219 PLPSPIDVLNGIAWDKE-HHRLFVTGK 244 (262)
T ss_dssp SCCSSCCCEEEEEEETT-TTEEEEEET
T ss_pred cccCcCCceEEEEEcCC-CCEEEEECC
Confidence 1122346789999994 455555544
No 247
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.32 E-value=0.00022 Score=68.80 Aligned_cols=188 Identities=7% Similarity=-0.033 Sum_probs=124.2
Q ss_pred cCeEEEEEecCCeEEEEECC--CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 355 GEILDLSWSKNNYLLSASID--KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~d--g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
.....|.|+++..+.+.+.+ ..|+.+|+.+++.+...............+..+.+++..-.++.+.+||..+.+.+..
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 44678999873356666665 4899999999999998875544443333332445555556789999999999998877
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
+.....-..+ .++++.|+++..++.|.++|..+.+.......... ......++.+.+. ++..++..-.+..|.
T Consensus 101 i~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~---g~~~~~lNeLe~~--~G~lyanvw~s~~I~ 173 (243)
T 3mbr_X 101 FRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG---GRPLDNLNELEWV--NGELLANVWLTSRIA 173 (243)
T ss_dssp EECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEET---TEECCCEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC---CcccccceeeEEe--CCEEEEEECCCCeEE
Confidence 7655443344 46788888888899999999998776544332221 1122345566665 355554444678899
Q ss_pred EEeCCcccee--eecc-----------cCCCCeEEEEEecCCCEEEEEeC
Q 005352 513 ILQGPNVIGK--YKGL-----------RRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 513 iwd~~~~~~~--~~~~-----------~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
+.|..+.... +... ....-.+.++++|+++.|+..+.
T Consensus 174 vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 174 RIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9998754322 2211 12235689999998777766653
No 248
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.31 E-value=9e-05 Score=72.22 Aligned_cols=184 Identities=8% Similarity=0.011 Sum_probs=123.7
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEE--EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTC--VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~--l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
.....|.|+.+.++.+.+.+|.|+++|+.+++.+..+ ....... +++. .+.+++..-.++.+.+||..+.+.+..
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 3457888874337778888899999999999988877 4444433 5553 455666666789999999999999877
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
+.....-..++ ++++.|+++..++.|.++|..+.+......... .......++.+.|. ++.+++..-.++.|.
T Consensus 132 i~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~---~g~~v~~lNeLe~~--dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 132 TRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL---RGQPVELINELECA--NGVIYANIWHSSDVL 204 (268)
T ss_dssp EECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE---TTEECCCEEEEEEE--TTEEEEEETTCSEEE
T ss_pred EeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC---CCcccccccccEEe--CCEEEEEECCCCeEE
Confidence 66544433444 678889888889999999999877654433222 11122345667776 455554444688999
Q ss_pred EEeCCccce--eeecc-----------cCCCCeEEEEEecCCCEEEEEe
Q 005352 513 ILQGPNVIG--KYKGL-----------RRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 513 iwd~~~~~~--~~~~~-----------~~~~~v~~l~~s~dg~~l~sgs 548 (701)
+.|..+... .+... ....-.+.++++|+++.|+..+
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999875432 22211 1224678999999776555544
No 249
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.31 E-value=0.0011 Score=76.88 Aligned_cols=199 Identities=13% Similarity=0.086 Sum_probs=130.6
Q ss_pred ccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec---------CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP---------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 354 ~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~---------h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
...|.++...+++.|..|+.++-|..|+..+++...... ....|.++...+ ++++|..|+.++-|.+||.
T Consensus 356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEET
T ss_pred CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeC
Confidence 356899988888888889998889999988776543321 135689998887 7775677777778999999
Q ss_pred CCCcEEEEec-----CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 425 LSCHVVDWVD-----IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 425 ~~~~~~~~~~-----~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
.+++...... ....|.++...++|+. .+|+. +-+.+|+..+++....... ..........|.++...+ ++
T Consensus 435 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~i~~d~-~g 509 (795)
T 4a2l_A 435 NSGQVENFNQRNSQLVNENVYAILPDGEGNL-WLGTL-SALVRFNPEQRSFTTIEKE--KDGTPVVSKQITTLFRDS-HK 509 (795)
T ss_dssp TTCCEEEECTTTSCCSCSCEEEEEECSSSCE-EEEES-SCEEEEETTTTEEEECCBC--TTCCBCCCCCEEEEEECT-TC
T ss_pred CCCcEEEeecCCCCcCCCeeEEEEECCCCCE-EEEec-CceeEEeCCCCeEEEcccc--ccccccCCceEEEEEECC-CC
Confidence 8887665432 2356899998888764 44555 4588899887654321100 000112235688887766 34
Q ss_pred CEEEEEECCCcEEEEeCCccceeeec-----ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 500 SKVMVSCADSQVRILQGPNVIGKYKG-----LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~~~~~~~~~-----~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
. +.+|+. +-|..||..+....+.. ......|.++..+++|.+.++.. . -|..||..+.+
T Consensus 510 ~-lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 510 R-LWIGGE-EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQ 573 (795)
T ss_dssp C-EEEEES-SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTE
T ss_pred C-EEEEeC-CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCc
Confidence 4 455555 56888886543222211 11345789999999998666554 3 58888876543
No 250
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.30 E-value=0.0011 Score=77.18 Aligned_cols=198 Identities=9% Similarity=0.060 Sum_probs=132.4
Q ss_pred ccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-------CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 354 ~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-------h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
...|.++...++|.|..|+.++-|..|+..+........ ....|.++...+ +++ |..|+.++-|..||..+
T Consensus 309 ~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 309 QRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPIT 386 (795)
T ss_dssp SSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEECTTT
T ss_pred CCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEcCCC
Confidence 357999998888888889988889999876554322111 245699998876 555 55577777899999988
Q ss_pred CcEEEEec---------CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 427 CHVVDWVD---------IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 427 ~~~~~~~~---------~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
++...... ....|.+++..++|+.|.+|+.++-|..||..+++...-. ..........|.++...+
T Consensus 387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~----~~~~~l~~~~v~~i~~d~- 461 (795)
T 4a2l_A 387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFN----QRNSQLVNENVYAILPDG- 461 (795)
T ss_dssp CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEEC----TTTSCCSCSCEEEEEECS-
T ss_pred CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEee----cCCCCcCCCeeEEEEECC-
Confidence 76654431 1356899998888875788888778999998876543211 001112345688887766
Q ss_pred CCCEEEEEECCCcEEEEeCCccceeeec------ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 498 DSSKVMVSCADSQVRILQGPNVIGKYKG------LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~~~~~~~~------~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++ .|.+|+. +-|.+||..+....... ......|.++...++|.+.+... +-|+.|+..++.
T Consensus 462 ~g-~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 462 EG-NLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD 528 (795)
T ss_dssp SS-CEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred CC-CEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence 34 4555555 56888987653222111 11236789999999998666554 458888876553
No 251
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.30 E-value=0.00022 Score=69.77 Aligned_cols=207 Identities=12% Similarity=0.174 Sum_probs=136.6
Q ss_pred EEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecC--CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 349 EFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPH--SNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 349 ~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h--~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
.+.+-...+..|+|.|++ ++++...++.|...|.. ++.++.+.. ....-.|++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 345566789999999976 55557778899999998 888877753 35688889987 7766666556778999987
Q ss_pred CCCcE---EEEe-------cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee--cccCCCCCCeeEE
Q 005352 425 LSCHV---VDWV-------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH--SKKKAPCKRITGF 492 (701)
Q Consensus 425 ~~~~~---~~~~-------~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~i~~l 492 (701)
..... +... ..+.....++|+|.++.|+++.......+|.+..........+... .........+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65432 2222 1233468999999998888888776666776652100000111000 0011234568999
Q ss_pred EEecCCCCEEEEEECCCcEEEEeCCccc-eeeeccc-------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 493 QFLPQDSSKVMVSCADSQVRILQGPNVI-GKYKGLR-------RSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~-------~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
++.|..+.+++.+.....|.++|..... ..+.... .....-.++|.++|++.++ ++.+.++.+.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 9999877788888788889999977432 2222221 1135689999999984444 77777777753
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.30 E-value=0.00021 Score=69.04 Aligned_cols=189 Identities=8% Similarity=0.035 Sum_probs=121.9
Q ss_pred CcEEEEEEccCCCEEEEEeCCC--cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 251 GSILTMKFSPDGQYLASAGDDG--VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
.-...+.|++ +.+..+.|.+| .|+++|+.+++.+.++.++...
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~---------------------------------- 65 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY---------------------------------- 65 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC----------------------------------
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc----------------------------------
Confidence 3467899986 66677777754 8999999999876655432210
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCC
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDN 408 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~ 408 (701)
.--.++...+..+...-.++.+.+||..+.+.+.++.....-..++ + ++.
T Consensus 66 ---------------------------fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~-dg~ 115 (243)
T 3mbr_X 66 ---------------------------FGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--S-DDS 115 (243)
T ss_dssp ---------------------------CEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--E-CSS
T ss_pred ---------------------------ceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--e-CCC
Confidence 0112333322244445578999999999999999998655445555 4 555
Q ss_pred EEEEEEcCCcEEEEeCCCCcEEEEecCC------CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec-c
Q 005352 409 YFISGSIDGKVRIWAVLSCHVVDWVDIR------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS-K 481 (701)
Q Consensus 409 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~------~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~-~ 481 (701)
.|+.+..++.|.++|..+.+.+..+... ..++.+.+. +|+.++..-.+..|.+.|..+++......+.... .
T Consensus 116 ~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~ 194 (243)
T 3mbr_X 116 HLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPD 194 (243)
T ss_dssp CEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTT
T ss_pred EEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccc
Confidence 5666566889999999998877554332 245566665 6655544446789999999998876544332111 0
Q ss_pred c----CCCCCCeeEEEEecCCCCEEEEE
Q 005352 482 K----KAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 482 ~----~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
. .....-.++|++.|....++++|
T Consensus 195 ~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 195 ADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred cccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 1 12334678999999544444444
No 253
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.28 E-value=0.00084 Score=68.10 Aligned_cols=185 Identities=12% Similarity=0.063 Sum_probs=109.0
Q ss_pred CeEEEEEecCC-eEEEEEC-CC-cEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc--
Q 005352 356 EILDLSWSKNN-YLLSASI-DK-TVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-- 428 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~-dg-~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-- 428 (701)
....+++.+++ ++++... ++ .|..+|..+++...... .......++..+ ++..+++-..++.|.++|..+++
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEe
Confidence 46788999998 4443333 22 46677777776544332 223345555554 44445544458889999987653
Q ss_pred EEEEe---------cCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCC-CeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 429 VVDWV---------DIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 429 ~~~~~---------~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
+.... ..-.....+ +|+++.|+++. ..+.|..|++.. +.... ...... ......+++.+
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~-~~~~~~------~~~P~gi~vd~- 221 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE-PEIFVE------QTNIDDFAFDV- 221 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC-CEEEEE------SCCCSSEEEBT-
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc-cEEEec------cCCCCCeEECC-
Confidence 21110 011234555 88887766654 567899999875 22211 111110 12356788888
Q ss_pred CCCEEEEEECCCcEEEEeCCccceee-ecccCCCCeEEEEEe---cCCCEEEEEeCCC
Q 005352 498 DSSKVMVSCADSQVRILQGPNVIGKY-KGLRRSGNQLSACFT---SDGKHIVSAGEDS 551 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~l~~s---~dg~~l~sgs~Dg 551 (701)
++.++++....+.|.+++........ .........++++|. |+++.|+.++..+
T Consensus 222 dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 222 EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 67777777778899999975322212 222234668999998 8888777666543
No 254
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=0.0041 Score=71.99 Aligned_cols=195 Identities=10% Similarity=0.038 Sum_probs=125.9
Q ss_pred ccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeee-------c---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe
Q 005352 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF-------P---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (701)
Q Consensus 354 ~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~-------~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd 423 (701)
...|.+|...+++.|..|+.++-|..++..+....... . ....|.++...+ +++ |..|+.++-|..||
T Consensus 312 ~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGK-LWIGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSC-EEEEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCC-EEEEeCCCcEEEEE
Confidence 45788998888888888888888999998765433221 1 235689998876 555 55666666799999
Q ss_pred CCCCcEEEEe----cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 424 VLSCHVVDWV----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 424 ~~~~~~~~~~----~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
..++...... .....|.++...++|. |.+|+.++-+..|+..+++.... .........|.++...+ .
T Consensus 390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~------~~~~~~~~~v~~i~~d~--~ 460 (781)
T 3v9f_A 390 NGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQII------ELEKNELLDVRVFYEDK--N 460 (781)
T ss_dssp TTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEEC------CSTTTCCCCEEEEEECT--T
T ss_pred CCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEe------ccCCCCCCeEEEEEECC--C
Confidence 8765544321 1235688888887775 55677767789999877654321 00012345677777765 3
Q ss_pred CEEEEEECCCcEEEEeCCccce-eeeccc----CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 500 SKVMVSCADSQVRILQGPNVIG-KYKGLR----RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~~~~~-~~~~~~----~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
..|.+|+. +-|..+|..+... .+.... ....|.++...++|.+.+.. .++-|+.|+..++
T Consensus 461 g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 461 KKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQ 525 (781)
T ss_dssp SEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCC
T ss_pred CCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCC
Confidence 45666666 5688898764322 121111 14678999999998866554 4344777886554
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.10 E-value=0.0001 Score=83.75 Aligned_cols=193 Identities=11% Similarity=0.047 Sum_probs=123.0
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCC-----------e-EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNY-----------V-TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~-----------V-~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
++.++.++.++.|..+|..+++.+..+..... + ..+++ .+..++.++.|+.|..+|..+++.+-.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE---ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 55778888899999999999999988863221 1 12233 345778888899999999999988743
Q ss_pred ecCC-----CcEEE-EEEeeCCCeEEEEec------CCcEEEEECCCCeeeeeeeEEeecccC-----------------
Q 005352 433 VDIR-----QIVTA-VCYRPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKK----------------- 483 (701)
Q Consensus 433 ~~~~-----~~i~~-i~~sp~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~~~~~~~~~----------------- 483 (701)
.... ..+.+ ..+ .+..++++.. +|.|..||..+++..............
T Consensus 143 ~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 3321 11111 111 1345666644 589999999999877654321100000
Q ss_pred ------CCCCCeeEEEEecCCCCEEEEEECCC-------------------cEEEEeCCccceeeeccc--CC-------
Q 005352 484 ------APCKRITGFQFLPQDSSKVMVSCADS-------------------QVRILQGPNVIGKYKGLR--RS------- 529 (701)
Q Consensus 484 ------~~~~~i~~l~~~p~~~~~l~~~s~dg-------------------~I~iwd~~~~~~~~~~~~--~~------- 529 (701)
........+++.| ...++++++.++ .|.-+|..+......... |.
T Consensus 221 ~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~ 299 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT 299 (668)
T ss_dssp CHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence 0011123467777 556777777665 388899887665554322 21
Q ss_pred CCeEEEEEecCCC---EEEEEeCCCcEEEEeCCCCCC
Q 005352 530 GNQLSACFTSDGK---HIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 530 ~~v~~l~~s~dg~---~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.+.....+..+|+ .|+.++.+|.++++|..+++.
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 2333344445775 789999999999999999874
No 256
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.07 E-value=0.00015 Score=82.28 Aligned_cols=187 Identities=9% Similarity=0.076 Sum_probs=119.1
Q ss_pred CCcEEEEECCCCeeeeeecCC--C------------------------------CeEEEEEeeCCCCEEEEEEcCC----
Q 005352 374 DKTVRLWRVGNDHCLRVFPHS--N------------------------------YVTCVHFNPVDDNYFISGSIDG---- 417 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~--~------------------------------~V~~l~f~p~~~~~l~sgs~dg---- 417 (701)
++.|..+|..+++.+..+... . ....+++.| ...+++.+..++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 588999999999988877521 0 012467888 677888887665
Q ss_pred ---------------cEEEEeCCCCcEEEEecC---C-------CcEEEEEEeeCCC---eEEEEecCCcEEEEECCCCe
Q 005352 418 ---------------KVRIWAVLSCHVVDWVDI---R-------QIVTAVCYRPDGQ---GGIVGSMMGDCRFYNVSDNH 469 (701)
Q Consensus 418 ---------------~v~iwd~~~~~~~~~~~~---~-------~~i~~i~~sp~g~---~l~~gs~dg~v~i~d~~~~~ 469 (701)
.|..+|..+++.+-.... . .++....+..+|+ .+++++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 399999999988743321 1 2333334445775 68899999999999999998
Q ss_pred eeeeeeEEeec-------c--------cCC-C------------CCCeeEEEEecCCCCEEEEEE---------------
Q 005352 470 LELDAEICVHS-------K--------KKA-P------------CKRITGFQFLPQDSSKVMVSC--------------- 506 (701)
Q Consensus 470 ~~~~~~~~~~~-------~--------~~~-~------------~~~i~~l~~~p~~~~~l~~~s--------------- 506 (701)
+.....+.... . ... . ...-..++++|+ ..++++..
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~-~g~~yv~~~~~~~~~~~~~~~~~ 414 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG-TGLVYIPYQEVPGVYRNEGKDFV 414 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT-TTEEEEEEEECCEEECCCGGGCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC-CCEEEEeccccceEeeeeccccc
Confidence 76332211000 0 000 0 000112567773 33433311
Q ss_pred ---------------------CCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 507 ---------------------ADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 507 ---------------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.++.|.-||..+.....+... ........+...+.+|+.++.||.|+.||..+++.
T Consensus 415 ~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 415 TRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp CCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC-CCCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 237789999887766554432 22333344556788999999999999999999874
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.06 E-value=0.0004 Score=77.14 Aligned_cols=195 Identities=10% Similarity=-0.032 Sum_probs=117.3
Q ss_pred CCeEEEEEC------CCcEEEEECCCCeeeeeecCCCCe---------------------------------------EE
Q 005352 365 NNYLLSASI------DKTVRLWRVGNDHCLRVFPHSNYV---------------------------------------TC 399 (701)
Q Consensus 365 ~~~l~s~s~------dg~I~iWd~~~~~~~~~~~h~~~V---------------------------------------~~ 399 (701)
++.++.++. ++.|..+|..+++.+..+...... ..
T Consensus 160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~ 239 (571)
T 2ad6_A 160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW 239 (571)
T ss_dssp TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence 455555544 789999999999988877532211 13
Q ss_pred EEEeeCCCCEEEEEEcC----------------CcEEEEeCCCCcEEEEecCC----------CcEEEEEEeeCCC---e
Q 005352 400 VHFNPVDDNYFISGSID----------------GKVRIWAVLSCHVVDWVDIR----------QIVTAVCYRPDGQ---G 450 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~d----------------g~v~iwd~~~~~~~~~~~~~----------~~i~~i~~sp~g~---~ 450 (701)
+++.+ ....++.+..+ +.|..+|..+++.+-..... ....-+...++|+ .
T Consensus 240 ~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred EEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 56666 55566665532 35999999999887333211 1111223335774 5
Q ss_pred EEEEecCCcEEEEECCCCeeeeeeeEEeecc----cC-CCCC--------------------------CeeEEEEecCCC
Q 005352 451 GIVGSMMGDCRFYNVSDNHLELDAEICVHSK----KK-APCK--------------------------RITGFQFLPQDS 499 (701)
Q Consensus 451 l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~----~~-~~~~--------------------------~i~~l~~~p~~~ 499 (701)
+++++.+|.+.++|..+++......+..... .. .... .-..++++|+ .
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~-~ 397 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE-S 397 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT-T
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC-C
Confidence 7788999999999999988765432211000 00 0000 0124567773 4
Q ss_pred CEEEEEE-------------------------------------CCCcEEEEeCCccceeeecccCCCCeEEEEEecCCC
Q 005352 500 SKVMVSC-------------------------------------ADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK 542 (701)
Q Consensus 500 ~~l~~~s-------------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~ 542 (701)
.++++.. .++.|..||..+.....+... ...+....+...+.
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t~gg 476 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGG 476 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTT
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC-CCCccceeEEECCC
Confidence 4554443 347888899876655544321 12222233344567
Q ss_pred EEEEEeCCCcEEEEeCCCCC
Q 005352 543 HIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 543 ~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.++.++.||.|+.||..+++
T Consensus 477 ~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 477 LVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp EEEEECTTSEEEEEETTTCC
T ss_pred EEEEEcCCCeEEEEECCCCC
Confidence 78889999999999999987
No 258
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.06 E-value=0.00085 Score=68.06 Aligned_cols=201 Identities=9% Similarity=-0.028 Sum_probs=121.6
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCC--cEEEEeCCCCcEEE
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG--KVRIWAVLSCHVVD 431 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg--~v~iwd~~~~~~~~ 431 (701)
.....++|.+++ .+++-..++.|..||.... ....+.....+..+++.+ +++++++..... .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 457789999988 5555557889999998754 444445556789999999 888766654432 47777877877654
Q ss_pred EecC--CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE-ee-cccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 432 WVDI--RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC-VH-SKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 432 ~~~~--~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~-~~-~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
.... ......++..+++..+++-..++.|..+|............. .. ............+ +|+++.++++-..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 4332 233455665555544444446889999998764321110000 00 0011122344555 6743345555566
Q ss_pred CCcEEEEeCCc-cc-eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 508 DSQVRILQGPN-VI-GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 508 dg~I~iwd~~~-~~-~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
.+.|..++... .. ..............++++++|+++++....+.|.+++..
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 88999999753 11 000111111345668899999887777778899999864
No 259
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.03 E-value=0.001 Score=71.01 Aligned_cols=205 Identities=10% Similarity=0.090 Sum_probs=114.8
Q ss_pred cCeEEEEEecCCeEEEEECCC----c-EEEEECCCCee-eeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc
Q 005352 355 GEILDLSWSKNNYLLSASIDK----T-VRLWRVGNDHC-LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg----~-I~iWd~~~~~~-~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~ 428 (701)
.....|++++++.|+.+...+ . +...+...+.. ...+..-.....++++|.++.++++-..++.|+.+|..++.
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~ 261 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT 261 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe
Confidence 457788999988444443321 1 33333221110 01222234456788888556666665567889999998776
Q ss_pred E-EEEec--CCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECCC--CeeeeeeeEEee-cc--------cCCCCCCeeEEE
Q 005352 429 V-VDWVD--IRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSD--NHLELDAEICVH-SK--------KKAPCKRITGFQ 493 (701)
Q Consensus 429 ~-~~~~~--~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~--~~~~~~~~~~~~-~~--------~~~~~~~i~~l~ 493 (701)
. ..... .......++|+|+++.|+++ ...+.|+.+++.. +.+.....+.-. .. ..........++
T Consensus 262 ~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gia 341 (433)
T 4hw6_A 262 LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGI 341 (433)
T ss_dssp EEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEE
T ss_pred EEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEE
Confidence 6 22222 22234579999999965555 4567899988763 221100011100 00 011234467788
Q ss_pred Ee--------cCCCCEEEEEECCCcEEEEeCCccceeeeccc----------------CCCCeEEEEEe-cCCCEEEEEe
Q 005352 494 FL--------PQDSSKVMVSCADSQVRILQGPNVIGKYKGLR----------------RSGNQLSACFT-SDGKHIVSAG 548 (701)
Q Consensus 494 ~~--------p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~----------------~~~~v~~l~~s-~dg~~l~sgs 548 (701)
+. ..++.++++-...+.|+.++.......+.+.. .-.....++++ ++|.++++=.
T Consensus 342 v~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~ 421 (433)
T 4hw6_A 342 FVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC 421 (433)
T ss_dssp EEECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred EEccccccccCCCCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC
Confidence 82 22556666666688999998643232222211 12347789999 6666666666
Q ss_pred CCCcEEEEeCC
Q 005352 549 EDSNVYMWNCI 559 (701)
Q Consensus 549 ~Dg~I~iWd~~ 559 (701)
.+..|+.++++
T Consensus 422 ~n~rIr~i~~e 432 (433)
T 4hw6_A 422 DNHRVRKIAPE 432 (433)
T ss_dssp GGTEEEEEEEC
T ss_pred CCCEEEEEecC
Confidence 77788887754
No 260
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=0.0048 Score=71.39 Aligned_cols=198 Identities=10% Similarity=0.033 Sum_probs=127.2
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeee----cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~----~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
..|.++...+++.|..|+.++-|..||..++...... .....|.++...+ ++. |..|+.++-|..+|..+++..
T Consensus 363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp SCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEEEEEECSSSCEEE
T ss_pred cceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCCEEEEcCCCCcEE
Confidence 5688998888888888887778999998765433221 1346788988876 555 455676677999998887665
Q ss_pred EEec---CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 431 DWVD---IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 431 ~~~~---~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
.... ....|.++...++|. |.+|+. +-+..|+..+++..... ...........|.++...+ + ..|.+|+.
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~---~~~~~~~~~~~i~~i~~d~-~-g~lWigt~ 513 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHY---DTSNSQLLENFVRSIAQDS-E-GRFWIGTF 513 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEE---CTTTSSCSCSCEEEEEECT-T-CCEEEEES
T ss_pred EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecc---cCcccccccceeEEEEEcC-C-CCEEEEEc
Confidence 4432 245788888887775 555665 56888998776543211 0000111235688887766 3 44666666
Q ss_pred CCcEEEEeCCccce-eeecc--cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 508 DSQVRILQGPNVIG-KYKGL--RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 508 dg~I~iwd~~~~~~-~~~~~--~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++-|..||...... .+... .....|.++...++|.+.++.. +|.|..||..+++
T Consensus 514 ~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 514 GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 55577788754322 22111 1345788999989988666554 6765888877654
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.99 E-value=0.0054 Score=63.42 Aligned_cols=199 Identities=7% Similarity=-0.052 Sum_probs=127.8
Q ss_pred cCeEEEEEecCC-eE-EEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 355 GEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l-~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
..+..++|.+.+ .| ++-...+.|..+++........+. .......+++.+..++++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 347889999754 44 444567889999988765444433 234567899987455666666667889999987654433
Q ss_pred Ee-cCCCcEEEEEEeeCCCeEEEEec-C-CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 432 WV-DIRQIVTAVCYRPDGQGGIVGSM-M-GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 432 ~~-~~~~~i~~i~~sp~g~~l~~gs~-d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
.. ..-.....++++|.+..|+.... . +.|..+++........ .........++++.|.++.++++-...
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~--------~~~~~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII--------ADTHLFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES--------CCSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE--------EECCCCCcceEEEeCCCCEEEEEECCC
Confidence 33 23356889999996666655543 4 7788888875432210 111234578999998666666666667
Q ss_pred CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 509 SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+.|..+|...................+++ ..+...++-...+.|..++..+++
T Consensus 225 ~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 225 HVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp TEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 88999987643222111123456678888 345555555667888888855554
No 262
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.99 E-value=0.0013 Score=70.18 Aligned_cols=204 Identities=9% Similarity=0.108 Sum_probs=113.7
Q ss_pred cCeEEEEEecCC-eEEEEECC-C----cEEEEECCCCeee--eeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 355 GEILDLSWSKNN-YLLSASID-K----TVRLWRVGNDHCL--RVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~d-g----~I~iWd~~~~~~~--~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
.....|+|++++ +|+.+... + .+.+.+. .+... ..+........++++|.++.++++-..++.|..++...
T Consensus 179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 456789999988 56666542 1 2333332 22221 22222334567889985566666666778999999987
Q ss_pred CcEEEEec--CCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECCC--CeeeeeeeEEee-ccc--------CCCCCCee-E
Q 005352 427 CHVVDWVD--IRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSD--NHLELDAEICVH-SKK--------KAPCKRIT-G 491 (701)
Q Consensus 427 ~~~~~~~~--~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~--~~~~~~~~~~~~-~~~--------~~~~~~i~-~ 491 (701)
+....... .......++|+|+|++|+++ ...+.|..++... +.+.....+.-. ... ........ .
T Consensus 258 ~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~g 337 (430)
T 3tc9_A 258 QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQG 337 (430)
T ss_dssp TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEE
T ss_pred CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcce
Confidence 76533332 22457899999999955554 5678899987664 222111111100 000 00112233 4
Q ss_pred EEEec-------CCCCEEEEEECCCcEEEEeCCccceeeeccc----------------CCCCeEEEEEecC-CCEEEEE
Q 005352 492 FQFLP-------QDSSKVMVSCADSQVRILQGPNVIGKYKGLR----------------RSGNQLSACFTSD-GKHIVSA 547 (701)
Q Consensus 492 l~~~p-------~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~----------------~~~~v~~l~~s~d-g~~l~sg 547 (701)
+...+ .++.++++-...+.|+.++.......+.+.. .-.....++++|+ +.++++-
T Consensus 338 v~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD 417 (430)
T 3tc9_A 338 TFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGD 417 (430)
T ss_dssp EEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred EEEccccccccCCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEE
Confidence 55532 1245555555678888888543222222210 1225789999995 5555555
Q ss_pred eCCCcEEEEeCC
Q 005352 548 GEDSNVYMWNCI 559 (701)
Q Consensus 548 s~Dg~I~iWd~~ 559 (701)
..+..|+.++++
T Consensus 418 ~~n~rIr~i~~e 429 (430)
T 3tc9_A 418 RENRRIRKIGYE 429 (430)
T ss_dssp GGGTEEEEEEEC
T ss_pred CCCCeEEEEccC
Confidence 667788887753
No 263
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.95 E-value=0.00019 Score=81.49 Aligned_cols=203 Identities=10% Similarity=0.041 Sum_probs=112.3
Q ss_pred eEEEEEecCC-eEEEEE-CCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEE-cC-----CcEEEEeCCC
Q 005352 357 ILDLSWSKNN-YLLSAS-IDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGS-ID-----GKVRIWAVLS 426 (701)
Q Consensus 357 I~~l~~s~~~-~l~s~s-~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs-~d-----g~v~iwd~~~ 426 (701)
..++++..++ .++.|+ .+..+.+||..+.+....-. ....-.++++.+ ++++++.|+ .+ ..+.+||..+
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCC
Confidence 3355667777 667776 45689999998876544322 222223455556 888999888 34 5699999988
Q ss_pred CcEEEEec-----CCCcEEEEEEeeCCCeEEEEecCC---------cEEEEECCCCeeeeeeeEEeeccc---CCCCCCe
Q 005352 427 CHVVDWVD-----IRQIVTAVCYRPDGQGGIVGSMMG---------DCRFYNVSDNHLELDAEICVHSKK---KAPCKRI 489 (701)
Q Consensus 427 ~~~~~~~~-----~~~~i~~i~~sp~g~~l~~gs~dg---------~v~i~d~~~~~~~~~~~~~~~~~~---~~~~~~i 489 (701)
.+-..... ....-....+..++..++.|+.+| .+..||..++....... ..... ......-
T Consensus 324 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~--~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 324 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG--KRQSNRGVAPDAMCG 401 (656)
T ss_dssp TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE--ECEETTEECCCCBTC
T ss_pred CcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCC--ccccccccCCCCCCC
Confidence 76443311 000000011224555556665544 46788887765432111 11100 0011122
Q ss_pred eEEEEecCCCCEEEEEECCC-----------cEEEEeCCccceeeec--ccCCC-CeEEEEEecCCCEEEEEeCC-----
Q 005352 490 TGFQFLPQDSSKVMVSCADS-----------QVRILQGPNVIGKYKG--LRRSG-NQLSACFTSDGKHIVSAGED----- 550 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~dg-----------~I~iwd~~~~~~~~~~--~~~~~-~v~~l~~s~dg~~l~sgs~D----- 550 (701)
.++.+...++.++++|+.++ .|.+||..+..-.... ..+.. .-.+++..|++++++.|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 34444444678888887542 5777876643222111 11222 22345667899999999854
Q ss_pred ------CcEEEEeCCCCC
Q 005352 551 ------SNVYMWNCIGHE 562 (701)
Q Consensus 551 ------g~I~iWd~~~~~ 562 (701)
..+.+||..+.+
T Consensus 482 ~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CCCSBCCCCEEEEGGGTE
T ss_pred CCCCcccceEEEcCCCCc
Confidence 468899986643
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.93 E-value=0.0017 Score=72.23 Aligned_cols=187 Identities=7% Similarity=-0.042 Sum_probs=111.8
Q ss_pred CCCcEEEEECCCCeeeeeecCCCCe---------------------------------------EEEEEeeCCCCEEEEE
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHSNYV---------------------------------------TCVHFNPVDDNYFISG 413 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~~~V---------------------------------------~~l~f~p~~~~~l~sg 413 (701)
.++.|+.+|..+++.+..+...... ..+++.+ ...+++.+
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g 258 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFG 258 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEe
Confidence 3789999999999998877632221 1345666 66677777
Q ss_pred EcC----------------CcEEEEeCCCCcEEEEecCC-----------CcEEEEEEe-eCC---CeEEEEecCCcEEE
Q 005352 414 SID----------------GKVRIWAVLSCHVVDWVDIR-----------QIVTAVCYR-PDG---QGGIVGSMMGDCRF 462 (701)
Q Consensus 414 s~d----------------g~v~iwd~~~~~~~~~~~~~-----------~~i~~i~~s-p~g---~~l~~gs~dg~v~i 462 (701)
..+ +.|..+|..+++.+-..... .++. +... .+| ..++.++.+|.+.+
T Consensus 259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~ 337 (599)
T 1w6s_A 259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYT 337 (599)
T ss_dssp CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEE
T ss_pred CCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEE
Confidence 655 37999999999887332211 1121 2222 467 46777899999999
Q ss_pred EECCCCeeeeeeeEEeec-----ccCCCC--------------------------CCeeEEEEecCCCCEEEEEE-----
Q 005352 463 YNVSDNHLELDAEICVHS-----KKKAPC--------------------------KRITGFQFLPQDSSKVMVSC----- 506 (701)
Q Consensus 463 ~d~~~~~~~~~~~~~~~~-----~~~~~~--------------------------~~i~~l~~~p~~~~~l~~~s----- 506 (701)
+|..+++......+.... ...... ..-..++++| +..++++..
T Consensus 338 lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~ 416 (599)
T 1w6s_A 338 LDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP-KRELFFMGINHICM 416 (599)
T ss_dssp EETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEE
T ss_pred EECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC-CCCEEEEeccccce
Confidence 999999876544321000 000000 0112345565 233333321
Q ss_pred ----------------------------------CCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 507 ----------------------------------ADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 507 ----------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
..+.|.-||..+.....+... ..+...-.+...+.+++.++.||.
T Consensus 417 ~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~ 495 (599)
T 1w6s_A 417 DWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGY 495 (599)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSE
T ss_pred eeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCe
Confidence 246777788776655444321 111221123346778888999999
Q ss_pred EEEEeCCCCCC
Q 005352 553 VYMWNCIGHEE 563 (701)
Q Consensus 553 I~iWd~~~~~~ 563 (701)
|+.||.+++++
T Consensus 496 l~A~D~~tG~~ 506 (599)
T 1w6s_A 496 LKARDSDTGDL 506 (599)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCCE
Confidence 99999999984
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.93 E-value=0.011 Score=60.01 Aligned_cols=199 Identities=8% Similarity=-0.021 Sum_probs=125.8
Q ss_pred cCeEEEEEecCC--eEEEEECCCcEEEEECCC----Ceeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC
Q 005352 355 GEILDLSWSKNN--YLLSASIDKTVRLWRVGN----DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 355 ~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~----~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~ 427 (701)
.....++|.+.+ .+++-...+.|..+++.. ......+. .-..+..+++.+..++++++-...+.|.++++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 456789999865 444555568999999876 22222232 22456889998735555566567789999998866
Q ss_pred cEEEEec-CCCcEEEEEEeeCCCeEEEEecC--CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 428 HVVDWVD-IRQIVTAVCYRPDGQGGIVGSMM--GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 428 ~~~~~~~-~~~~i~~i~~sp~g~~l~~gs~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
....+.. .......++++|.+..|+.+... +.|..+++....... +. ........++++.++++.++++
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~-----~~---~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-----LV---TENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE-----EE---CSSCSCEEEEEEETTTTEEEEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE-----EE---ECCCCCceEEEEeccCCEEEEE
Confidence 5444333 33568899999977766665543 678888886543221 00 1123457899999855556666
Q ss_pred EECCCcEEEEeCCcc-ceee-ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 505 SCADSQVRILQGPNV-IGKY-KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 505 ~s~dg~I~iwd~~~~-~~~~-~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
-+..+.|..+|.... ...+ ...........+++. .+.++++-...+.|..++..+++
T Consensus 182 D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 666789999998632 2222 111123456788885 35555666677889999977665
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.93 E-value=0.0022 Score=65.42 Aligned_cols=190 Identities=14% Similarity=0.028 Sum_probs=120.9
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--------------------CCCCeEEEEEeeCCCCEEEEE
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--------------------HSNYVTCVHFNPVDDNYFISG 413 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--------------------h~~~V~~l~f~p~~~~~l~sg 413 (701)
....+++|.+++ +++++..++.|..|+..+++...... ....+..+++.+ +...|+.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-CCCcEEEE
Confidence 345678899888 68888889999999987654432110 013578899986 44456666
Q ss_pred EcCCcEEEEeCCCCcEEEEec-----CCCcEEEEEEee-CCCeEEEEec-----------------CCcEEEEECCCCee
Q 005352 414 SIDGKVRIWAVLSCHVVDWVD-----IRQIVTAVCYRP-DGQGGIVGSM-----------------MGDCRFYNVSDNHL 470 (701)
Q Consensus 414 s~dg~v~iwd~~~~~~~~~~~-----~~~~i~~i~~sp-~g~~l~~gs~-----------------dg~v~i~d~~~~~~ 470 (701)
...+.|..+|..++....+.. ....+..+++.+ +|+..++-.. ++.|..||..+++.
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 555668889987664332221 113478899999 8876665432 36788888876654
Q ss_pred eeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE-ECCCcEEEEeCCcc----ceeeecccCCCCeEEEEEecCCCEEE
Q 005352 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQVRILQGPNV----IGKYKGLRRSGNQLSACFTSDGKHIV 545 (701)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~-s~dg~I~iwd~~~~----~~~~~~~~~~~~v~~l~~s~dg~~l~ 545 (701)
.... .. ......++++| ++..|+++ ...+.|.+|+.... ...+.. ..+ ...++++++|++.+
T Consensus 178 ~~~~----~~-----~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 178 TLLL----KE-----LHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EEEE----EE-----ESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEE
T ss_pred EEec----cC-----CccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEE
Confidence 3211 00 12356789999 56655444 56789999997631 112221 223 78899999998777
Q ss_pred EEeC----------CCcEEEEeC
Q 005352 546 SAGE----------DSNVYMWNC 558 (701)
Q Consensus 546 sgs~----------Dg~I~iWd~ 558 (701)
+... .+.|..++.
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~ 267 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDE 267 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECT
T ss_pred EecCcccccccCCCccEEEEECC
Confidence 6644 355667764
No 267
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.91 E-value=0.0037 Score=65.64 Aligned_cols=200 Identities=7% Similarity=-0.066 Sum_probs=129.0
Q ss_pred ccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 354 SGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 354 ~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
...+..++|.+.+ .+++-...+.|..+++........+. .......+++.+..++++++-...+.|.+.++......
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 3457899999754 44455567889999988765444443 23356788898745556666666778999888765433
Q ss_pred EEec-CCCcEEEEEEeeCCCeEEEEec-C-CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 431 DWVD-IRQIVTAVCYRPDGQGGIVGSM-M-GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 431 ~~~~-~~~~i~~i~~sp~g~~l~~gs~-d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
.... .-.....++++|.+..|+.... . +.|..+++........ . ........+|++.|.++.++++-+.
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~----~----~~~~~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII----A----DTHLFWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----E----CSSCSCEEEEEEEGGGTEEEEEETT
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE----E----ECCCCCeeeEEEeCCCCEEEEEECC
Confidence 3332 3356899999997776666544 3 6788888875432211 0 1123457899999856666666666
Q ss_pred CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 508 DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 508 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.+.|..+|...................+++ ..+.++++-...+.|..++..+++
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp TTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 888999987643222212123456678888 345555666677889888865555
No 268
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.88 E-value=0.0031 Score=69.98 Aligned_cols=154 Identities=8% Similarity=-0.076 Sum_probs=93.6
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCC-----CeEEEEEeeCCCCEEEEEEc------CCcEEEEeCCCCcEEEEe
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSN-----YVTCVHFNPVDDNYFISGSI------DGKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~-----~V~~l~f~p~~~~~l~sgs~------dg~v~iwd~~~~~~~~~~ 433 (701)
++.++.++.|+.|..+|..+++.+..+.... .+.+--.-. + ..++.++. ++.|..+|..+++.+-..
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 4578888889999999999999988775322 222111111 3 45555554 789999999999877433
Q ss_pred cCCCcE---------------------------------------EEEEEeeCCCeEEEEecC----------------C
Q 005352 434 DIRQIV---------------------------------------TAVCYRPDGQGGIVGSMM----------------G 458 (701)
Q Consensus 434 ~~~~~i---------------------------------------~~i~~sp~g~~l~~gs~d----------------g 458 (701)
...... ..+++.+....+++++.+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 221111 235677777777777643 3
Q ss_pred cEEEEECCCCeeeeeeeEEeeccc--CCCCCCeeEEEEecCCC---CEEEEEECCCcEEEEeCCcccee
Q 005352 459 DCRFYNVSDNHLELDAEICVHSKK--KAPCKRITGFQFLPQDS---SKVMVSCADSQVRILQGPNVIGK 522 (701)
Q Consensus 459 ~v~i~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~p~~~---~~l~~~s~dg~I~iwd~~~~~~~ 522 (701)
.|..+|..+++.....+...+... .....++. +.... ++ ..++.++.+|.++++|..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLI 339 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEE
Confidence 599999999887654332111100 01112221 22223 34 35777888999999998765443
No 269
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.80 E-value=0.0038 Score=69.33 Aligned_cols=152 Identities=13% Similarity=0.014 Sum_probs=93.9
Q ss_pred EEEEECCCcEEEEECCCCeeeeeecCCC-----CeEE-EEEeeCCCCEEEEEE------cCCcEEEEeCCCCcEEEEecC
Q 005352 368 LLSASIDKTVRLWRVGNDHCLRVFPHSN-----YVTC-VHFNPVDDNYFISGS------IDGKVRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 368 l~s~s~dg~I~iWd~~~~~~~~~~~h~~-----~V~~-l~f~p~~~~~l~sgs------~dg~v~iwd~~~~~~~~~~~~ 435 (701)
++.++.|+.|..+|..+++.+....... .+++ -.+. ++ .+++++ .+|.|+.+|..+++.+-....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 8888899999999999999887765322 2221 1111 44 455554 379999999999988733322
Q ss_pred CCcE---------------------------------------EEEEEeeCCCeEEEEecCC----------------cE
Q 005352 436 RQIV---------------------------------------TAVCYRPDGQGGIVGSMMG----------------DC 460 (701)
Q Consensus 436 ~~~i---------------------------------------~~i~~sp~g~~l~~gs~dg----------------~v 460 (701)
.... ..+++.+....+++++.++ .|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 2111 1356777788888887653 79
Q ss_pred EEEECCCCeeeeeeeEEeeccc--CCCCCCeeEEEEecCCC---CEEEEEECCCcEEEEeCCccceee
Q 005352 461 RFYNVSDNHLELDAEICVHSKK--KAPCKRITGFQFLPQDS---SKVMVSCADSQVRILQGPNVIGKY 523 (701)
Q Consensus 461 ~i~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~p~~~---~~l~~~s~dg~I~iwd~~~~~~~~ 523 (701)
..+|..+++.....+...+... .....++. +.....++ ..++.++.+|.++++|..+.....
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 9999999987654432211100 00111121 22210134 467778899999999987655443
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.79 E-value=0.00059 Score=77.39 Aligned_cols=183 Identities=11% Similarity=0.015 Sum_probs=97.2
Q ss_pred EEEecCC-eEEEEE-CC-----CcEEEEECCCCeeeee-----ecCCCCeEEEEEeeCCCCEEEEEEcCC---------c
Q 005352 360 LSWSKNN-YLLSAS-ID-----KTVRLWRVGNDHCLRV-----FPHSNYVTCVHFNPVDDNYFISGSIDG---------K 418 (701)
Q Consensus 360 l~~s~~~-~l~s~s-~d-----g~I~iWd~~~~~~~~~-----~~h~~~V~~l~f~p~~~~~l~sgs~dg---------~ 418 (701)
++..+++ .++.|+ .+ ..+.+||..+.+.... ......-....+.. ++..++.|+.+| .
T Consensus 292 ~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~ 370 (656)
T 1k3i_A 292 SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTA 370 (656)
T ss_dssp EEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSE
T ss_pred eEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec-CCceEEEECCCCcEEEecCccc
Confidence 3445566 666666 34 5699999988765443 11000000011112 445555555443 4
Q ss_pred EEEEeCCCCcEEEEecC----------CCcEEEEEEee-CCCeEEEEecCC-----------cEEEEECCCCeeeeeeeE
Q 005352 419 VRIWAVLSCHVVDWVDI----------RQIVTAVCYRP-DGQGGIVGSMMG-----------DCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 419 v~iwd~~~~~~~~~~~~----------~~~i~~i~~sp-~g~~l~~gs~dg-----------~v~i~d~~~~~~~~~~~~ 476 (701)
+..||..+......... ...-.++.|.. +++.+++|+.++ .+.+||..+.......
T Consensus 371 v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-- 448 (656)
T 1k3i_A 371 MNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-- 448 (656)
T ss_dssp EEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC--
T ss_pred eeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc--
Confidence 67888877654322211 11234455543 677778877543 5778888776543211
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECC-----------CcEEEEeCCccceeee--cccCCCCeEEEEEecCCCE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----------SQVRILQGPNVIGKYK--GLRRSGNQLSACFTSDGKH 543 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-----------g~I~iwd~~~~~~~~~--~~~~~~~v~~l~~s~dg~~ 543 (701)
.........-.+....| ++.++++|+.+ ..+.+||..+..-... ..........+.+.|+|+.
T Consensus 449 ---~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v 524 (656)
T 1k3i_A 449 ---SNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRV 524 (656)
T ss_dssp ---TTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCE
T ss_pred ---cCCCCCCcccCCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEE
Confidence 00111111223445666 67888888764 5688999764321111 1112223344556799999
Q ss_pred EEEEeC
Q 005352 544 IVSAGE 549 (701)
Q Consensus 544 l~sgs~ 549 (701)
++.|+.
T Consensus 525 ~v~GG~ 530 (656)
T 1k3i_A 525 FNGGGG 530 (656)
T ss_dssp EEEECC
T ss_pred EecCCC
Confidence 999985
No 271
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.79 E-value=0.0067 Score=65.12 Aligned_cols=208 Identities=10% Similarity=0.085 Sum_probs=120.9
Q ss_pred cCeEEEEE-------ecCC-eEEEEECCC-------cEEEEECCC-Ceee-----eeecCCCCeEEEEEeeCCCCEEEEE
Q 005352 355 GEILDLSW-------SKNN-YLLSASIDK-------TVRLWRVGN-DHCL-----RVFPHSNYVTCVHFNPVDDNYFISG 413 (701)
Q Consensus 355 ~~I~~l~~-------s~~~-~l~s~s~dg-------~I~iWd~~~-~~~~-----~~~~h~~~V~~l~f~p~~~~~l~sg 413 (701)
.....|+| ++++ .|+.+...+ .|.+.+... +... ..+..-.....++++|.++.++++-
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd 265 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNS 265 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEE
Confidence 35778899 8888 566666554 256665433 1221 1222112345678898556666677
Q ss_pred EcCCcEEEEeCC-------CCcE--------------EEEecCCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECCC--Ce
Q 005352 414 SIDGKVRIWAVL-------SCHV--------------VDWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSD--NH 469 (701)
Q Consensus 414 s~dg~v~iwd~~-------~~~~--------------~~~~~~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~--~~ 469 (701)
..++.|..+|+. ++.. +...........|+|+|+|+.|+++ +....|+.++... ..
T Consensus 266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~ 345 (496)
T 3kya_A 266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE 345 (496)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce
Confidence 778889999987 4543 1112233457899999999965555 5567888866543 22
Q ss_pred eeeeeeEEee-ccc--------CCCCCCee-EEEEec------CCCCEEEEEECCCcEEEEeCCccceeeeccc------
Q 005352 470 LELDAEICVH-SKK--------KAPCKRIT-GFQFLP------QDSSKVMVSCADSQVRILQGPNVIGKYKGLR------ 527 (701)
Q Consensus 470 ~~~~~~~~~~-~~~--------~~~~~~i~-~l~~~p------~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~------ 527 (701)
+.....+.-. ... ........ .+.... .++.++++=...+.|+.++.......+.+..
T Consensus 346 ~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~ 425 (496)
T 3kya_A 346 FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLA 425 (496)
T ss_dssp ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHH
T ss_pred ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCCEEEEeccccccccc
Confidence 2100001110 000 11222344 444431 2456666667788999998543333332210
Q ss_pred ----------------CCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCC
Q 005352 528 ----------------RSGNQLSACFTSD-GKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 528 ----------------~~~~v~~l~~s~d-g~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.-.....++++++ |.++++=..+.+|+.++++...
T Consensus 426 ~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 426 DGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp HSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred CccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 1234678999997 7666666778899999987655
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.79 E-value=0.0013 Score=75.70 Aligned_cols=194 Identities=8% Similarity=-0.014 Sum_probs=100.8
Q ss_pred EEEEEecCC-eEEEEECC-----CcEEEEECCCCee--eeee--cCCCCeEEEEEeeCCCCEEEEEEc---CCcEEEEeC
Q 005352 358 LDLSWSKNN-YLLSASID-----KTVRLWRVGNDHC--LRVF--PHSNYVTCVHFNPVDDNYFISGSI---DGKVRIWAV 424 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~d-----g~I~iWd~~~~~~--~~~~--~h~~~V~~l~f~p~~~~~l~sgs~---dg~v~iwd~ 424 (701)
..++|+|++ .|+....+ ..|.++++.+++. ...+ ........+.|+| ++++|+.... ...|.++|+
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEES
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEEC
Confidence 357899998 56555554 3588888887642 2233 2334567889999 9998877653 345888899
Q ss_pred CCC--cE--EEEec-CCCcEEEEEEeeCCCeEEEEec-C----CcEEEEECCCC-eeeeeeeEEeecccCCCCCCeeEEE
Q 005352 425 LSC--HV--VDWVD-IRQIVTAVCYRPDGQGGIVGSM-M----GDCRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 425 ~~~--~~--~~~~~-~~~~i~~i~~sp~g~~l~~gs~-d----g~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~ 493 (701)
.++ +. ..+.. ......++.|+. |..|+..+. + ..|..+++.+. .... .+... .....+..+.
T Consensus 303 ~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~--~li~~----~~~~~l~~~~ 375 (751)
T 2xe4_A 303 RKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSH--VLVDH----SEDVFMESIA 375 (751)
T ss_dssp SSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCC--EEECC----CSSEEEEEEE
T ss_pred CCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccccee--eEECC----CCCcEEEEEE
Confidence 875 23 32222 234445555443 555554433 3 25666676542 1110 00000 1111344444
Q ss_pred EecCCCCEEEEEECCCcE--EEEeC-------Ccc--ceeeecccCCCCeEEEEE----ecCCC-EEEEEeCC---CcEE
Q 005352 494 FLPQDSSKVMVSCADSQV--RILQG-------PNV--IGKYKGLRRSGNQLSACF----TSDGK-HIVSAGED---SNVY 554 (701)
Q Consensus 494 ~~p~~~~~l~~~s~dg~I--~iwd~-------~~~--~~~~~~~~~~~~v~~l~~----s~dg~-~l~sgs~D---g~I~ 554 (701)
+. ++.++++...++.. .++++ ... ...+... ....+..+.+ ++++. ++++.+.. ..++
T Consensus 376 ~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~-~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~ 452 (751)
T 2xe4_A 376 VR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVME-EPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWF 452 (751)
T ss_dssp EC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCC-CSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEE
T ss_pred EE--CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCC-CceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEE
Confidence 43 45566666777754 45564 221 1222111 1122333332 34554 44444433 4678
Q ss_pred EEeCCCCC
Q 005352 555 MWNCIGHE 562 (701)
Q Consensus 555 iWd~~~~~ 562 (701)
.+|+.+++
T Consensus 453 ~~d~~~~~ 460 (751)
T 2xe4_A 453 DVSPQDHS 460 (751)
T ss_dssp EECTTTCC
T ss_pred EEECCCCc
Confidence 88887664
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.76 E-value=0.0062 Score=61.98 Aligned_cols=180 Identities=6% Similarity=-0.079 Sum_probs=115.2
Q ss_pred CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC----CcEEEEec-CCCcEEEEEEeeCC
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS----CHVVDWVD-IRQIVTAVCYRPDG 448 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~----~~~~~~~~-~~~~i~~i~~sp~g 448 (701)
...|+..|+.+.+....+..-..+..++|++.++.++++-..++.|..+++.. ........ .-..+..+++.+.+
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 35688999988876666666677899999983444555555668899999876 22222232 22456789998755
Q ss_pred CeEE-EEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-CcEEEEeCCccceeeecc
Q 005352 449 QGGI-VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-SQVRILQGPNVIGKYKGL 526 (701)
Q Consensus 449 ~~l~-~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-g~I~iwd~~~~~~~~~~~ 526 (701)
..|+ +-...+.|.++++........ .. .......++++.|.++.++++.... +.|..+++..........
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~----~~----~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTL----FR----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEE----EE----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEE----EE----CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 5554 446678899999876533211 11 1224578999998555555554443 788888875332222111
Q ss_pred cCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCC
Q 005352 527 RRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGH 561 (701)
Q Consensus 527 ~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~ 561 (701)
........+++++++..|+.+. ..+.|..++++..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 2345678999999877776554 5678999998753
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.76 E-value=0.011 Score=57.79 Aligned_cols=204 Identities=8% Similarity=0.119 Sum_probs=120.9
Q ss_pred ceeccCCCcEEEEEEccCCCEEEE-EeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLAS-AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+.+.+-.+.+..|+|+|++..|++ ...++.|...|.. ++.+..+.+
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-------------------------------- 66 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-------------------------------- 66 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC--------------------------------
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec--------------------------------
Confidence 345566678999999998665554 6667777777765 443332211
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCee---eeee-------
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHC---LRVF------- 391 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~---~~~~------- 391 (701)
.+ ....-.|++.+++ ++++.-.++.+.++++..... +...
T Consensus 67 ----------------------------~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~ 117 (255)
T 3qqz_A 67 ----------------------------DF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQES 117 (255)
T ss_dssp ----------------------------SS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSC
T ss_pred ----------------------------CC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccc
Confidence 11 1456677888877 445544667888888765432 1222
Q ss_pred cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC---CcEEEEec--------CCCcEEEEEEeeCCC-eEEEEecCCc
Q 005352 392 PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS---CHVVDWVD--------IRQIVTAVCYRPDGQ-GGIVGSMMGD 459 (701)
Q Consensus 392 ~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~---~~~~~~~~--------~~~~i~~i~~sp~g~-~l~~gs~dg~ 459 (701)
..+.....|+|+| .++.|+++.......||.+.. ...+.... .-..+.+++++|... +++.......
T Consensus 118 ~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~ 196 (255)
T 3qqz_A 118 PTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRA 196 (255)
T ss_dssp CCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTE
T ss_pred cccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCe
Confidence 1344568999999 666666666555555555431 11111111 123578999999654 5555666777
Q ss_pred EEEEECCCCeeeeeeeEEeecc---cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 460 CRFYNVSDNHLELDAEICVHSK---KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 460 v~i~d~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
+..+|.... .... +.+... .........+|+|.+ +++ |++.+..+.++.+.
T Consensus 197 L~~~d~~g~-~~~~--~~L~~g~~~l~~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 197 LQEVTLVGE-VIGE--MSLTKGSRGLSHNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp EEEECTTCC-EEEE--EECSTTGGGCSSCCCSEEEEEECT-TCC-EEEEETTTEEEEEE
T ss_pred EEEEcCCCC-EEEE--EEcCCccCCcccccCCCCeeEECC-CCC-EEEEcCCceEEEEE
Confidence 888997754 3221 122211 112234678999999 566 44457777776664
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.75 E-value=0.0072 Score=62.46 Aligned_cols=197 Identities=8% Similarity=-0.037 Sum_probs=126.5
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 435 (701)
..+|.+..++.+|+.+. ...|+..++..............+..++|++.++.++++-...+.|..+++.......+...
T Consensus 35 ~~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 35 RRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SSCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred CCcccccccCceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 34455555545444433 45688888877666555555566899999984555555555678899999987654443332
Q ss_pred -CCcEEEEEEeeCCCeE-EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-CcEE
Q 005352 436 -RQIVTAVCYRPDGQGG-IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-SQVR 512 (701)
Q Consensus 436 -~~~i~~i~~sp~g~~l-~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-g~I~ 512 (701)
......+++.+.+..| ++-...+.|.++++........ . ........++++.|.++.++++-... +.|.
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l----~----~~~l~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL----L----WQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----E----CTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE----E----eCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence 2456788999855555 4455578899999876532211 1 11234568999999666666665555 8898
Q ss_pred EEeCCccceeeecccCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCC
Q 005352 513 ILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSA-GEDSNVYMWNCIGH 561 (701)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~~ 561 (701)
.+++..................++++|++..|+.+ ...+.|..++++..
T Consensus 186 r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 186 ASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp EEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 88876433222222234567899999877766655 45678999998754
No 276
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.73 E-value=0.012 Score=59.76 Aligned_cols=199 Identities=4% Similarity=-0.065 Sum_probs=127.7
Q ss_pred CeEEEEEecC-C-eEEEEECCCcEEEEECCCCeee-eee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 356 EILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCL-RVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 356 ~I~~l~~s~~-~-~l~s~s~dg~I~iWd~~~~~~~-~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
.+..++|.+. + .+.+-...+.|..+++...... ..+ ..-.....+++.+..++++++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 4668899985 4 4455556788999998766321 122 2234567899987456666666667889999987654333
Q ss_pred Ee-cCCCcEEEEEEeeCCCeEEEEec--CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 432 WV-DIRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 432 ~~-~~~~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
.. ........+++.|.+..|+.+.. .+.|..+++....... +. ........++++.|+++.++++-+..
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~-----~~---~~~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI-----II---NSEIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE-----EE---CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE-----EE---ECCCCCccEEEEeccCCEEEEEECCC
Confidence 33 34456889999997767766653 5788888887543211 00 11234568999999666666666668
Q ss_pred CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 509 SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+.|..+|...................+++.. +.++++-...+.|..++..+++.
T Consensus 188 ~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp TEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 8999999763222211112345567788753 34555556678899999877763
No 277
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.72 E-value=0.027 Score=59.24 Aligned_cols=203 Identities=8% Similarity=-0.018 Sum_probs=129.4
Q ss_pred CCccCeEEEEEecCC-eE-EEEECCCcEEEEECCCC----eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 352 GHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVGND----HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-~l-~s~s~dg~I~iWd~~~~----~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
.....+..|+|.+.+ .| ++-...+.|+.+++... .....+. .......+++.+..++++++-...+.|.+.++
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 345678899999854 44 44455788999988752 2223333 34567899998745666666666788999999
Q ss_pred CCCcEEEEec-CCCcEEEEEEeeCCCeEEEEec--CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCE
Q 005352 425 LSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (701)
Q Consensus 425 ~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~ 501 (701)
.......... .-.....|++.|.+..|+.... .+.|...++........ . ........+|++.+.++.+
T Consensus 189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~----~----~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----V----TENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE----E----CSSCSCEEEEEEETTTTEE
T ss_pred CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE----E----ECCCCceEEEEEEeCCCEE
Confidence 8765554443 3456889999997777766653 37888888876433211 0 1123467899999855555
Q ss_pred EEEEECCCcEEEEeCCccce-ee-ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 502 VMVSCADSQVRILQGPNVIG-KY-KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 502 l~~~s~dg~I~iwd~~~~~~-~~-~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+++-...+.|..+|...... .+ ...........+++. .+.++++-...+.|..++..+++.
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred EEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence 56556678899999763222 22 211123455677773 344555666778899999766653
No 278
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.59 E-value=0.015 Score=64.47 Aligned_cols=194 Identities=13% Similarity=0.033 Sum_probs=115.6
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCCe----------EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYV----------TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD 434 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V----------~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 434 (701)
++.++.++.++.|.-+|..+++.+..+...... ..+++ .+..++.++.|+.|.-+|..+++.+-...
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~---~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI---YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE---ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE---ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 566666666445999999999998887632211 12233 34577888889999999999998873332
Q ss_pred CCC-----cEE-EEEEee---CCC-eEEEEec------CCcEEEEECCCCeeeeeeeEEe-----ec--------ccC--
Q 005352 435 IRQ-----IVT-AVCYRP---DGQ-GGIVGSM------MGDCRFYNVSDNHLELDAEICV-----HS--------KKK-- 483 (701)
Q Consensus 435 ~~~-----~i~-~i~~sp---~g~-~l~~gs~------dg~v~i~d~~~~~~~~~~~~~~-----~~--------~~~-- 483 (701)
... .+. ...+.. +|+ .+++++. +|.|.-+|..+++......... .. ...
T Consensus 145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence 211 111 111111 233 5666653 7899999999988765432110 00 000
Q ss_pred ------------------CCCCCeeEEEEecCCCCEEEEEEC--------------------C----CcEEEEeCCccce
Q 005352 484 ------------------APCKRITGFQFLPQDSSKVMVSCA--------------------D----SQVRILQGPNVIG 521 (701)
Q Consensus 484 ------------------~~~~~i~~l~~~p~~~~~l~~~s~--------------------d----g~I~iwd~~~~~~ 521 (701)
.....-...++.| ...+++++.. | +.|.-+|..+...
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred cCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 0000112356666 4456665553 2 5788899887666
Q ss_pred eeecc--cCC--------CCeEEEEEe-cCCC---EEEEEeCCCcEEEEeCCCCCC
Q 005352 522 KYKGL--RRS--------GNQLSACFT-SDGK---HIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 522 ~~~~~--~~~--------~~v~~l~~s-~dg~---~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
..... .|. .++. +... .+|+ .|+.++.+|.++++|..+++.
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 55432 121 1222 2222 4674 788999999999999999874
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.59 E-value=0.014 Score=61.56 Aligned_cols=187 Identities=7% Similarity=-0.066 Sum_probs=120.4
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC----cEEEEec-CCCcEEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC----HVVDWVD-IRQIVTA 441 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~----~~~~~~~-~~~~i~~ 441 (701)
+|+.+. ...|+..++..............+..++|++.++.++++-...+.|+.+++... ....... ....+..
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 444444 467888999887766666666788999999844545555556788999998752 2223332 3456888
Q ss_pred EEEeeCCC-eEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-CCcEEEEeCCcc
Q 005352 442 VCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPNV 519 (701)
Q Consensus 442 i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-dg~I~iwd~~~~ 519 (701)
+++.+.+. .+++-...+.|.+.++......... . .......+|++.|..+.++++-.. .+.|...++...
T Consensus 164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~----~----~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF----R----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE----E----CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred EEEEecCCceEEEECCCCeEEEEeCCCCceEEEE----e----CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence 99998544 4445556788999998865432211 1 122447899999955555554433 478888887643
Q ss_pred ceeeecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCC
Q 005352 520 IGKYKGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 520 ~~~~~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~~ 562 (701)
...............+++++++..|+.+. ..+.|..++++...
T Consensus 236 ~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 236 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence 33222222345778999999887777664 56789999987643
No 280
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.57 E-value=0.01 Score=65.82 Aligned_cols=144 Identities=10% Similarity=0.056 Sum_probs=84.4
Q ss_pred CcEEEEeCCCCcEEEEec---CC--------CcEEEEEEe-eCCC---eEEEEecCCcEEEEECCCCeeeeeeeEEeec-
Q 005352 417 GKVRIWAVLSCHVVDWVD---IR--------QIVTAVCYR-PDGQ---GGIVGSMMGDCRFYNVSDNHLELDAEICVHS- 480 (701)
Q Consensus 417 g~v~iwd~~~~~~~~~~~---~~--------~~i~~i~~s-p~g~---~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~- 480 (701)
+.|..+|..+++.+-... +. .++. +... .+|+ .++.++.+|.++++|..+++......+....
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 579999999999874332 21 1121 2222 4674 7888999999999999998876543321100
Q ss_pred ----------------ccCC--------CC------------CCeeEEEEecCCCCEEEEEE------------------
Q 005352 481 ----------------KKKA--------PC------------KRITGFQFLPQDSSKVMVSC------------------ 506 (701)
Q Consensus 481 ----------------~~~~--------~~------------~~i~~l~~~p~~~~~l~~~s------------------ 506 (701)
.... .. .....++++|..+ ++++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG-LFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC-CEEEEEECEEEEEEECCCCCCTTS
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC-EEEEechhcceeeecccccccCCC
Confidence 0000 00 0011345666333 333322
Q ss_pred ---------------CCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 507 ---------------ADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 507 ---------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.++.|.-||..+.....+.... .++..-.....+.+++.++.||.++.||.+++++
T Consensus 449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 2577888998876655443211 1222222233567888899999999999999883
No 281
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.56 E-value=0.039 Score=55.51 Aligned_cols=203 Identities=8% Similarity=0.037 Sum_probs=128.1
Q ss_pred CCccCeEEEEEecCC-eEEEEE-CCCcEEEEECCCCeeeee-ecC-------CCCeEEEEE---eeCCCCEEEEEEc---
Q 005352 352 GHSGEILDLSWSKNN-YLLSAS-IDKTVRLWRVGNDHCLRV-FPH-------SNYVTCVHF---NPVDDNYFISGSI--- 415 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-~l~s~s-~dg~I~iWd~~~~~~~~~-~~h-------~~~V~~l~f---~p~~~~~l~sgs~--- 415 (701)
....--.+++|.+.. .|+.++ ..++|..|+...+..... +.. ...+..|.| .| ++.++++...
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~a 88 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKS 88 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccc
Confidence 334445578998855 666666 789999999976644333 322 114689999 68 6667765432
Q ss_pred ----------CCcEEEEeCC---CCcEEEEecC--------------CCcEEEEEEeeCCCeEEEEecC-CcEEEEECCC
Q 005352 416 ----------DGKVRIWAVL---SCHVVDWVDI--------------RQIVTAVCYRPDGQGGIVGSMM-GDCRFYNVSD 467 (701)
Q Consensus 416 ----------dg~v~iwd~~---~~~~~~~~~~--------------~~~i~~i~~sp~g~~l~~gs~d-g~v~i~d~~~ 467 (701)
+..|..||+. +++.+..... ......++..++|+..++++.. +.|..++...
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 5779999999 7766544332 1248899999999999999988 8888888765
Q ss_pred CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce-eeecc--c---CCCCeEEE-EEecC
Q 005352 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG-KYKGL--R---RSGNQLSA-CFTSD 540 (701)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~-~~~~~--~---~~~~v~~l-~~s~d 540 (701)
..... +.............++|++.| ++..|++....+.|..+|+..... .+... + .......+ ..-.+
T Consensus 169 ~~~~~---~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~ 244 (334)
T 2p9w_A 169 KTVST---FAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVG 244 (334)
T ss_dssp CCEEE---EEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEET
T ss_pred CEEee---eeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccC
Confidence 43221 111111122334578999999 677777776699999999885433 12211 1 11223333 33457
Q ss_pred CCE-EEEEeCCCcEEEEeCC
Q 005352 541 GKH-IVSAGEDSNVYMWNCI 559 (701)
Q Consensus 541 g~~-l~sgs~Dg~I~iWd~~ 559 (701)
|+. |++.+..+.+.+.+-+
T Consensus 245 G~vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 245 NESVLVGARAPYAISFRSWD 264 (334)
T ss_dssp TEEEEEEEETTEEEEEECSS
T ss_pred CEEEEEEcCCCCEEEEECCC
Confidence 777 5555566655555543
No 282
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.53 E-value=0.011 Score=62.09 Aligned_cols=194 Identities=8% Similarity=-0.028 Sum_probs=124.3
Q ss_pred EEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-CC
Q 005352 359 DLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQ 437 (701)
Q Consensus 359 ~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~ 437 (701)
|.+..+..+|+.+. ...|+..++..............+..++|++.++.++++-...+.|..+++.......+... ..
T Consensus 81 C~~~~~~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~ 159 (386)
T 3v65_B 81 CKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 159 (386)
T ss_dssp EEECSSCCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS
T ss_pred ECCccccceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC
Confidence 44444444444443 45788889887766655555567899999984555555655678899999987765444332 23
Q ss_pred cEEEEEEeeCCCeEE-EEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-CcEEEEe
Q 005352 438 IVTAVCYRPDGQGGI-VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-SQVRILQ 515 (701)
Q Consensus 438 ~i~~i~~sp~g~~l~-~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-g~I~iwd 515 (701)
....+++.+.+..|+ +-...+.|.++++........ . ........++++.|.++.++++-... +.|..++
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l----~----~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL----L----WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE----E----CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe----e----cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 567788988655554 445567888888875432211 1 11234578999998655555555555 7888888
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCC
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSA-GEDSNVYMWNCIGH 561 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~~ 561 (701)
+..................++|+|++..|+.+ +..+.|..++++..
T Consensus 232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 76433322222234567899999877766655 45678999998754
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.47 E-value=0.0054 Score=70.57 Aligned_cols=194 Identities=9% Similarity=0.061 Sum_probs=106.7
Q ss_pred CeEEEEEe-cCC-eEE-EEECCC----cEEEEECCCC-eeeee-ecCCCCeEEEEEeeCCCCEEEEEEcC-----CcEEE
Q 005352 356 EILDLSWS-KNN-YLL-SASIDK----TVRLWRVGND-HCLRV-FPHSNYVTCVHFNPVDDNYFISGSID-----GKVRI 421 (701)
Q Consensus 356 ~I~~l~~s-~~~-~l~-s~s~dg----~I~iWd~~~~-~~~~~-~~h~~~V~~l~f~p~~~~~l~sgs~d-----g~v~i 421 (701)
.+...+|| |+| +|+ +.+.+| +|+++|+.++ +.+.. +. .....+.|+| +++.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGP-DHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECS-STTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEec-CCCEEEEEEECCCCCCCEEEE
Confidence 57788999 999 555 333333 4999999998 63211 11 1234688999 88877777665 25888
Q ss_pred EeCCCCcE--EEEe--cCCCcEEEEEEeeCCCeEEEEec---CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 422 WAVLSCHV--VDWV--DIRQIVTAVCYRPDGQGGIVGSM---MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 422 wd~~~~~~--~~~~--~~~~~i~~i~~sp~g~~l~~gs~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
+++.+++. ..+. ........+.|+|||++|+.... ...|.++|+.+...... +.............+.|
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~----~~~l~~~~~~~~~s~~~ 327 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT----LEIVRPREKGVRYDVQM 327 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC----EEESSCCCTTCCEEEEE
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce----eEEeecCCCCceEEEee
Confidence 88877642 1221 22344678899999999887663 34588888876421100 00001111233344444
Q ss_pred ecCCCCEEEEEECC----CcEEEEeCCccc--ee-eecccCCCCeEEEEEecCCCEEEEEeCCCcE--EEEeC
Q 005352 495 LPQDSSKVMVSCAD----SQVRILQGPNVI--GK-YKGLRRSGNQLSACFTSDGKHIVSAGEDSNV--YMWNC 558 (701)
Q Consensus 495 ~p~~~~~l~~~s~d----g~I~iwd~~~~~--~~-~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I--~iWd~ 558 (701)
.. ++.+++.+..+ ..|..++..+.. .. +........+..+++. .+.++++...++.. +++++
T Consensus 328 ~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 328 HG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp ET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred ee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 33 34444444433 356677765321 11 2221111234445443 23445666777764 45554
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.37 E-value=0.0046 Score=65.92 Aligned_cols=156 Identities=11% Similarity=0.061 Sum_probs=101.2
Q ss_pred CeEEEEEeeC-CCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecC-C----cEEEEECCCCe
Q 005352 396 YVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM-G----DCRFYNVSDNH 469 (701)
Q Consensus 396 ~V~~l~f~p~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d-g----~v~i~d~~~~~ 469 (701)
....|+++|. ++. |+.+...+.|+.+|+..+.+..+.........++++++|+.|+++... + .+..++... .
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-G 215 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-T
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-c
Confidence 5678899972 344 555544488999999888777666666779999999999977766542 2 233344322 2
Q ss_pred eeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce-eeecccCCCCeEEEEEecCCCEEEE-E
Q 005352 470 LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG-KYKGLRRSGNQLSACFTSDGKHIVS-A 547 (701)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~~s~dg~~l~s-g 547 (701)
......+ . ......++++.|.++.++++-..++.|+.++...... .+...........++|+|+|++|+. -
T Consensus 216 ~~~~~~l--~-----~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 216 FKVITEL--T-----KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp SCSEEEE--E-----ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred eeeeeee--c-----cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 2110111 1 1234567889986667777766789999999875433 2222222345789999999995554 4
Q ss_pred eCCCcEEEEeCCC
Q 005352 548 GEDSNVYMWNCIG 560 (701)
Q Consensus 548 s~Dg~I~iWd~~~ 560 (701)
...+.|+.++.+.
T Consensus 289 ~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 289 VNQHYILRSDYDW 301 (430)
T ss_dssp TTTTEEEEEEEET
T ss_pred CCCCEEEEEeCCc
Confidence 5678899988764
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.36 E-value=0.083 Score=53.60 Aligned_cols=182 Identities=11% Similarity=0.163 Sum_probs=116.8
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCC----C---EEEEEEc---CCcEEEEeC--CCCcEEEEec
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDD----N---YFISGSI---DGKVRIWAV--LSCHVVDWVD 434 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~----~---~l~sgs~---dg~v~iwd~--~~~~~~~~~~ 434 (701)
.++.....+-+.+||+ +++.++.+.. +.++.+..-| +- . ++++... +++|.+|++ .++++.....
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 6777778889999999 8888888764 6678887776 21 1 2333333 578999977 4444333311
Q ss_pred ------CC-CcEEEEEE--eeC-CC-eEEEEecCCcEEEEECCC---Ceeeee--eeEEeecccCCCCCCeeEEEEecCC
Q 005352 435 ------IR-QIVTAVCY--RPD-GQ-GGIVGSMMGDCRFYNVSD---NHLELD--AEICVHSKKKAPCKRITGFQFLPQD 498 (701)
Q Consensus 435 ------~~-~~i~~i~~--sp~-g~-~l~~gs~dg~v~i~d~~~---~~~~~~--~~~~~~~~~~~~~~~i~~l~~~p~~ 498 (701)
.. ..+..+|+ +|. ++ ++++...+|.+..|++.. +..... ..+. ....+..+...+ .
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-------lgsq~EgcvvDd-~ 190 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-------MNSQTEGMAADD-E 190 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-------CSSCEEEEEEET-T
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-------CCCCcceEEEcC-C
Confidence 11 55677888 664 43 688888999999999843 222111 1111 124678888887 6
Q ss_pred CCEEEEEECCCcEEEEeCC-----ccceeee--cccCCCCeEEEEE--ecCCC-EEEEEe-CCCcEEEEeCC
Q 005352 499 SSKVMVSCADSQVRILQGP-----NVIGKYK--GLRRSGNQLSACF--TSDGK-HIVSAG-EDSNVYMWNCI 559 (701)
Q Consensus 499 ~~~l~~~s~dg~I~iwd~~-----~~~~~~~--~~~~~~~v~~l~~--s~dg~-~l~sgs-~Dg~I~iWd~~ 559 (701)
...|+++-.+..|..++.. +...... ...-...+..|++ .++++ ||++++ .+....+|+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 7889999998777777754 1111111 1112246888888 45555 666665 67799999986
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.32 E-value=0.1 Score=59.75 Aligned_cols=205 Identities=9% Similarity=-0.015 Sum_probs=127.6
Q ss_pred EcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCC----eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 350 FHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGND----HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~----~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
+......+..|+|.+.. ++++-...+.|+.+++... .....+. .-.....|++.+..++++++-...+.|.+.
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 33345667899999854 4445555678998988753 2233333 345677899988455666666677899999
Q ss_pred eCCCCcEEEEec-CCCcEEEEEEeeCCCeEEEEec--CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 423 AVLSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 423 d~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
++.......+.. .-.....|++.|.+..|+.... .+.|...++........ + ........+|++.+..+
T Consensus 499 ~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l----v----~~~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 499 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----V----TENIQWPNGITLDLLSG 570 (791)
T ss_dssp ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE----E----CSSCSCEEEEEEETTTT
T ss_pred eCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE----E----eCCCCCceEEEEecCCC
Confidence 998766554443 3456899999998767766653 26788888876543211 1 11235678999998555
Q ss_pred CEEEEEECCCcEEEEeCCccceee--ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 500 SKVMVSCADSQVRILQGPNVIGKY--KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~~~~~~~--~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.++++-...+.|..+++....... ...........|++..+ .++++-...+.|...+..+++.
T Consensus 571 ~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCC
T ss_pred eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcc
Confidence 556665667889999876332222 21112334566766433 3334445667888888777653
No 287
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.30 E-value=0.29 Score=58.57 Aligned_cols=323 Identities=11% Similarity=0.060 Sum_probs=156.4
Q ss_pred CcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC------CCEEEEEeC-CCcEEE
Q 005352 204 GEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD------GQYLASAGD-DGVVRL 276 (701)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g~~Lasgs~-Dg~I~i 276 (701)
..+...+.++..++.++ ++.+.++.++... +... ...+ -...|.|+++.|. ++++|.|.. |++|+|
T Consensus 514 ~~I~~As~n~~~vvva~-g~~l~~fel~~~~--L~~~-~~~~---l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I 586 (1158)
T 3ei3_A 514 KNISVASCNSSQVVVAV-GRALYYLQIHPQE--LRQI-SHTE---MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARI 586 (1158)
T ss_dssp CCCCEEEECSSEEEEEE-TTEEEEEEEETTE--EEEE-EEEE---CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEE
T ss_pred CEEEEEEeCCCEEEEEE-CCEEEEEEeeCCc--eeee-cccC---CCCceEEEEeecCCCCcccccEEEEEECCCCEEEE
Confidence 34556666666666664 5677777665321 1111 1112 2457999999863 468999997 999999
Q ss_pred EEeecCeeeeeecCCC-CCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEE--EcCCccccccCCCeEEEcCC
Q 005352 277 WQVVEDERLTEVDIPE-IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACV--VFPPKVFRILEKPLHEFHGH 353 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h 353 (701)
+++.+.+.+....+.. ..+..+.+.... .. ..+. -+..++..+ .++.....+... ...+.|
T Consensus 587 ~sL~~l~~~~~~~L~~~~~p~si~l~~~~-~~-~~L~------------igl~dG~l~~~~~d~~tg~l~d~-r~~~LG- 650 (1158)
T 3ei3_A 587 LKLPSFELLHKEMLGGEIIPRSILMTTFE-SS-HYLL------------CALGDGALFYFGLNIETGLLSDR-KKVTLG- 650 (1158)
T ss_dssp EETTTCCEEEEEECCSSCCEEEEEEEEET-TE-EEEE------------EEETTSEEEEEEECTTTCCEEEE-EEEECC-
T ss_pred EECCCCCeEEEEECCCCCCCcEEEEEEeC-CC-cEEE------------EEeCCCeEEEEEEcCCCCccccc-eeEEcC-
Confidence 9998766655444432 112222111110 00 0011 111111111 111111111111 112223
Q ss_pred ccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCe-EEEEEeeCC-CCEEEEEEcCCcEEEEeCCCCc-
Q 005352 354 SGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYV-TCVHFNPVD-DNYFISGSIDGKVRIWAVLSCH- 428 (701)
Q Consensus 354 ~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V-~~l~f~p~~-~~~l~sgs~dg~v~iwd~~~~~- 428 (701)
..++.-..+...+ .+++++ +....++.-+..-....+.. ..+ ....|+... .+-++... ++.++|..+..-+
T Consensus 651 ~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~-~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~ 727 (1158)
T 3ei3_A 651 TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVFSNVNL-KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQK 727 (1158)
T ss_dssp SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEEEEBSS-SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSS
T ss_pred CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEEeccCh-HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCC
Confidence 2344433343333 333333 33333343222211111112 223 233454311 23455444 5669998875432
Q ss_pred -EEEEecCCCcEEEEEEeeCCCeEEEEecCC-------------------------------------------------
Q 005352 429 -VVDWVDIRQIVTAVCYRPDGQGGIVGSMMG------------------------------------------------- 458 (701)
Q Consensus 429 -~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg------------------------------------------------- 458 (701)
.+..+.....+..++++|..+.++++..+.
T Consensus 728 ~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s 807 (1158)
T 3ei3_A 728 LHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVH 807 (1158)
T ss_dssp EEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEE
T ss_pred eeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeE
Confidence 335566778899999999888776654321
Q ss_pred cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec---CCCCEEEEEE----------CCCcEEEEeCCcccee-ee
Q 005352 459 DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP---QDSSKVMVSC----------ADSQVRILQGPNVIGK-YK 524 (701)
Q Consensus 459 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p---~~~~~l~~~s----------~dg~I~iwd~~~~~~~-~~ 524 (701)
.++++|..+.+.... ..-.....+.+++... +...++++|+ ..|.|++|++.+.... ..
T Consensus 808 ~i~lidp~t~~~i~~-------~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~ 880 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHA-------HQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVA 880 (1158)
T ss_dssp EEEEEETTTCCEEEE-------EECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCCeEEEE-------EeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEE
Confidence 123333322221110 0111223344554332 2347888887 3578999987532111 11
Q ss_pred cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 525 GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 525 ~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.....+.+++++-- +| +|++|- ..+|++|++...+
T Consensus 881 ~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 881 EKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTS
T ss_pred EEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCc
Confidence 12246788887743 45 444443 4689999997654
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.25 E-value=0.15 Score=51.53 Aligned_cols=151 Identities=5% Similarity=-0.040 Sum_probs=92.6
Q ss_pred CeEEEEEecC-C-eEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCEEEEEE--cCCcEEEEeCCCCcEE
Q 005352 356 EILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVV 430 (701)
Q Consensus 356 ~I~~l~~s~~-~-~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs--~dg~v~iwd~~~~~~~ 430 (701)
....+++.+. + .+++-...+.|.++++........+ ..-.....+++.| .+..|+.+. ..+.|...++......
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG~~~~ 158 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMDGSSRF 158 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCeE
Confidence 3456777764 4 4455556788999998765433333 2445678999998 444444444 2577888888654333
Q ss_pred EEe-cCCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 431 DWV-DIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 431 ~~~-~~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
.+. ..-...+.++++|++..|+.+ +..+.|..+++........ .. .......++++. .+.++.+-...
T Consensus 159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~----~~----~~~~~P~glav~--~~~lywtd~~~ 228 (318)
T 3sov_A 159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV----VK----GSLPHPFALTLF--EDILYWTDWST 228 (318)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----EC----SCCSCEEEEEEE--TTEEEEEETTT
T ss_pred EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEE----ec----CCCCCceEEEEe--CCEEEEEecCC
Confidence 332 223567899999977766665 4567899999875432211 11 122345667764 34555555556
Q ss_pred CcEEEEeCC
Q 005352 509 SQVRILQGP 517 (701)
Q Consensus 509 g~I~iwd~~ 517 (701)
+.|..++..
T Consensus 229 ~~V~~~~~~ 237 (318)
T 3sov_A 229 HSILACNKY 237 (318)
T ss_dssp TEEEEEETT
T ss_pred CeEEEEECC
Confidence 778777764
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.20 E-value=0.017 Score=61.53 Aligned_cols=195 Identities=9% Similarity=0.010 Sum_probs=116.4
Q ss_pred CeEEEEEecC---CeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC---C-cEEEEeCCCCc
Q 005352 356 EILDLSWSKN---NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---G-KVRIWAVLSCH 428 (701)
Q Consensus 356 ~I~~l~~s~~---~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d---g-~v~iwd~~~~~ 428 (701)
....|+|.|+ +.|+.+...+.|+.+|..++..............++|++ +++++++-... . .+...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568899984 566666555899999998887776665556789999999 88855544321 1 13333322211
Q ss_pred E-EEEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCC-EEEEE
Q 005352 429 V-VDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS-KVMVS 505 (701)
Q Consensus 429 ~-~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~-~l~~~ 505 (701)
. ............++++| +|..+++-..++.|+.++..++...... ... .....-..++++| +++ ++++-
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~-~~~-----~~~~~~~~ia~dp-dG~~LYvad 291 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE-VMM-----DTKGSNFHIVWHP-TGDWAYIIY 291 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE-EEC-----SCCSSCEEEEECT-TSSEEEEEE
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE-ecc-----CCCCCcccEEEeC-CCCEEEEEe
Confidence 1 01112234456788999 6655555556788999998866541111 110 0112234799999 556 55555
Q ss_pred ECCCcEEEEeCCccc------eeeecc-c------------CCCCeEEEEE---------ecCCCEEEEEeCCCcEEEEe
Q 005352 506 CADSQVRILQGPNVI------GKYKGL-R------------RSGNQLSACF---------TSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 506 s~dg~I~iwd~~~~~------~~~~~~-~------------~~~~v~~l~~---------s~dg~~l~sgs~Dg~I~iWd 557 (701)
...+.|+.++..... ..+.+. . .-.....+++ .++|.+.++-...+.|+.++
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 667899998754211 111111 0 1234567888 66777666666677888887
Q ss_pred C
Q 005352 558 C 558 (701)
Q Consensus 558 ~ 558 (701)
.
T Consensus 372 ~ 372 (433)
T 4hw6_A 372 P 372 (433)
T ss_dssp T
T ss_pred C
Confidence 3
No 290
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.18 E-value=0.23 Score=49.59 Aligned_cols=239 Identities=8% Similarity=0.093 Sum_probs=152.0
Q ss_pred EEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcC
Q 005352 257 KFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFP 336 (701)
Q Consensus 257 ~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (701)
-.+|..+.||.-. ..++.|+|+++.+++..+...
T Consensus 73 IMnP~~~ViALra-g~~LQiFnletK~klks~~~~--------------------------------------------- 106 (365)
T 2xzh_A 73 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT--------------------------------------------- 106 (365)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---------------------------------------------
T ss_pred eeCCCccEEEEec-CCeEEEechHHhhhhcceecC---------------------------------------------
Confidence 3478777777665 578999999998766554322
Q ss_pred CccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCC-Ceeeeeec-----CCCCeEEEEEeeCCCCEE
Q 005352 337 PKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFP-----HSNYVTCVHFNPVDDNYF 410 (701)
Q Consensus 337 ~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~-~~~~~~~~-----h~~~V~~l~f~p~~~~~l 410 (701)
..|.-=+|-....|+-.+ +..|+-|++.. ..+++.|. ....|..-..++ +.+++
T Consensus 107 ------------------e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~ 166 (365)
T 2xzh_A 107 ------------------DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWL 166 (365)
T ss_dssp ------------------SCEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT-TSCEE
T ss_pred ------------------CccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECC-CCCEE
Confidence 345555666665444333 45799999874 46666665 245566667777 77776
Q ss_pred EEEEc-------CCcEEEEeCCCCcEEEEecCCCcEEEEEEe--eCC-CeEEEEec---CCcEEEEECCCC---eeee-e
Q 005352 411 ISGSI-------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYR--PDG-QGGIVGSM---MGDCRFYNVSDN---HLEL-D 473 (701)
Q Consensus 411 ~sgs~-------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~s--p~g-~~l~~gs~---dg~v~i~d~~~~---~~~~-~ 473 (701)
+..+. .|.+.+|..+.+......+|......+.+. +.. +.++.+.. .+++++.++... .... .
T Consensus 167 ~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~k 246 (365)
T 2xzh_A 167 LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK 246 (365)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCC
T ss_pred EEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCccc
Confidence 65442 377899998877555444443332222111 011 12222222 258999998543 1111 1
Q ss_pred eeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcE
Q 005352 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNV 553 (701)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I 553 (701)
....+.........-..+++.++ ....+..-+.-|.|++||+.+....|...-....|...+-+....=++.-...|.|
T Consensus 247 k~vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 247 KAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 325 (365)
T ss_dssp EEEEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEE
T ss_pred ccceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEE
Confidence 12222222333455567788888 67889999999999999999999998877677788777766665556666789988
Q ss_pred EEEeCCCCC
Q 005352 554 YMWNCIGHE 562 (701)
Q Consensus 554 ~iWd~~~~~ 562 (701)
.--.++...
T Consensus 326 l~v~v~~~~ 334 (365)
T 2xzh_A 326 LSVCVEEEN 334 (365)
T ss_dssp EEEEECTTT
T ss_pred EEEEECccc
Confidence 888877655
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.05 E-value=0.091 Score=53.31 Aligned_cols=111 Identities=13% Similarity=0.183 Sum_probs=80.0
Q ss_pred cCeEEEEE--ecC-C--eEEEEECCCcEEEEEC-------CCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 355 GEILDLSW--SKN-N--YLLSASIDKTVRLWRV-------GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 355 ~~I~~l~~--s~~-~--~l~s~s~dg~I~iWd~-------~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
..+..+++ ++. + +++....+|.+..|++ .+.+.++.|...+.+-.+...+ ....|+.+-.+..|..|
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~ 206 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD-EYGRLYIAEEDEAIWKF 206 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC-CCCeEEEecccceEEEE
Confidence 34555666 553 4 6888888999999988 2446778888888899999998 77888889888767666
Q ss_pred eCC-----CCcEEEEecCC---CcEEEEEEe--eCCC-eEEEEe-cCCcEEEEECC
Q 005352 423 AVL-----SCHVVDWVDIR---QIVTAVCYR--PDGQ-GGIVGS-MMGDCRFYNVS 466 (701)
Q Consensus 423 d~~-----~~~~~~~~~~~---~~i~~i~~s--p~g~-~l~~gs-~dg~v~i~d~~ 466 (701)
+.. +++++...... ..+..|++. ++++ +|++.+ .++...+||..
T Consensus 207 da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 207 SAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp ECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 754 34555544322 468888884 5556 666666 46789999986
No 292
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.05 E-value=0.29 Score=54.61 Aligned_cols=198 Identities=8% Similarity=-0.063 Sum_probs=128.6
Q ss_pred cCeEEEEEecCC-e-EEEEECCCcEEEEECCCCeeeeeecC-CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 355 GEILDLSWSKNN-Y-LLSASIDKTVRLWRVGNDHCLRVFPH-SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 355 ~~I~~l~~s~~~-~-l~s~s~dg~I~iWd~~~~~~~~~~~h-~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
..+..|+|.+.+ . +++-..++.|..+++........+.. ...+..+++.+..++++++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 357789999865 4 44555678899999876544444432 24577899987456666666667889999987654333
Q ss_pred Ee-cCCCcEEEEEEeeCCCeEEEEec--CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 432 WV-DIRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 432 ~~-~~~~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
+. ..-.....|++.|....|+.... .+.|...++........ . .......++++.+.++.++++-...
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l----~-----~~~~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL----V-----PNVGRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----E-----CSCSSEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE----E-----CCCCCcceEEEccccCEEEEEECCC
Confidence 33 33456789999996666666653 56788888776543211 1 1235678999999555566666668
Q ss_pred CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 509 SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+.|..+|+........ .........+++.. +...++-...+.|...|..+++.
T Consensus 188 ~~I~~~d~dG~~~~v~-~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 188 NLIESSNMLGLNREVI-ADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp TEEEEEETTSCSCEEE-EECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CEEEEEcCCCCceEEe-eccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 8999999764322221 12334566788765 34444545578899888776653
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.04 E-value=0.092 Score=60.15 Aligned_cols=182 Identities=6% Similarity=-0.085 Sum_probs=117.4
Q ss_pred CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC----cEEEEec-CCCcEEEEEEeeC
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC----HVVDWVD-IRQIVTAVCYRPD 447 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~----~~~~~~~-~~~~i~~i~~sp~ 447 (701)
....|+..++..............+..|+|.+..+.++++-...+.|+.+++... ....... ....+..|++.+.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 3456888888877666666666778899999844555556556678999988753 2222232 3455778999987
Q ss_pred CCeEEE-EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-CcEEEEeCCccceeeec
Q 005352 448 GQGGIV-GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-SQVRILQGPNVIGKYKG 525 (701)
Q Consensus 448 g~~l~~-gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-g~I~iwd~~~~~~~~~~ 525 (701)
++.|+. -...+.|.+.++........ +. .......+|++.|..+.++++-... +.|.+.++.........
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l----~~----~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTL----FR----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEE----EE----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEE----Ee----CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence 755555 45578899999986543221 11 1224578999999545555554333 78888887644333322
Q ss_pred ccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCC
Q 005352 526 LRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 526 ~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~~ 562 (701)
.........|++++.+..|+.+. ....|...+++...
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 22446789999998777776664 45678888886654
No 294
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.99 E-value=0.022 Score=57.27 Aligned_cols=166 Identities=5% Similarity=0.036 Sum_probs=108.3
Q ss_pred CCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCCCCcEEEE-ecC-------CCcEEEEEE---eeCCCeEEEEec----
Q 005352 393 HSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVVDW-VDI-------RQIVTAVCY---RPDGQGGIVGSM---- 456 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~~~~~~~~-~~~-------~~~i~~i~~---sp~g~~l~~gs~---- 456 (701)
...+..+++|++ ....|..++ ..++|..||...+..... ... ...+..+.| .|+++.+++...
T Consensus 11 ~~~yPE~~~wd~-~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDR-TRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEET-TTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred cccCCcCccCcC-CCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 345667889998 455555555 789999999986654433 211 114689999 688777776432
Q ss_pred ---------CCcEEEEECC---CCeeeeeeeEEeecc-----cCCCCCCeeEEEEecCCCCEEEEEECC-CcEEEEeCCc
Q 005352 457 ---------MGDCRFYNVS---DNHLELDAEICVHSK-----KKAPCKRITGFQFLPQDSSKVMVSCAD-SQVRILQGPN 518 (701)
Q Consensus 457 ---------dg~v~i~d~~---~~~~~~~~~~~~~~~-----~~~~~~~i~~l~~~p~~~~~l~~~s~d-g~I~iwd~~~ 518 (701)
+..|..||+. +++......+..... ..........++..+ +++..++++.. +.|..++...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTS
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCC
Confidence 5779999998 665543322111000 000123478899998 78888888888 8887777653
Q ss_pred c-ceeeec----ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 519 V-IGKYKG----LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 519 ~-~~~~~~----~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
. ...+.. .......+.++++|+|+.|++....|.|..+|+..
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 2 111211 11223467999999999999887799999999884
No 295
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.91 E-value=0.51 Score=49.01 Aligned_cols=240 Identities=8% Similarity=0.094 Sum_probs=153.2
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEc
Q 005352 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF 335 (701)
Q Consensus 256 l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (701)
.-.+|..+.||-=. ..++.|+|+++.+++..+...+
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e------------------------------------------- 106 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------------------------------------- 106 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-------------------------------------------
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-------------------------------------------
Confidence 44577777776654 5789999999887665554322
Q ss_pred CCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCC-Ceeeeeec-----CCCCeEEEEEeeCCCCE
Q 005352 336 PPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFP-----HSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 336 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~-~~~~~~~~-----h~~~V~~l~f~p~~~~~ 409 (701)
.|.-=+|-.+..|+-.+ +..|+-|++.. ..+++.|. ....|..-..++ +.++
T Consensus 107 --------------------~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW 164 (494)
T 1bpo_A 107 --------------------DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKW 164 (494)
T ss_dssp --------------------CCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSE
T ss_pred --------------------CceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCe
Confidence 33344565555333333 45799999864 45666665 245566677777 7777
Q ss_pred EEEEEc-------CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeC---CCeEEEEec---CCcEEEEECCCC---eeee-
Q 005352 410 FISGSI-------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD---GQGGIVGSM---MGDCRFYNVSDN---HLEL- 472 (701)
Q Consensus 410 l~sgs~-------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~---g~~l~~gs~---dg~v~i~d~~~~---~~~~- 472 (701)
++..+. .|.+.+|....+......+|......+.+.-+ .+.++.+.. .+++++.++... ....
T Consensus 165 ~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~ 244 (494)
T 1bpo_A 165 LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 244 (494)
T ss_dssp EEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC
T ss_pred EEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc
Confidence 665442 47789999987765555555433322222111 012222322 278999998543 1111
Q ss_pred eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
.....+.........-..++..++ ....+..-+.-|.|++||+.+....|...-....|...+-+....=++.....|.
T Consensus 245 kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~Gq 323 (494)
T 1bpo_A 245 KKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ 323 (494)
T ss_dssp CEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCE
T ss_pred ceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCce
Confidence 112222222233445566788888 6788999999999999999999999887767778877777766666777778999
Q ss_pred EEEEeCCCCC
Q 005352 553 VYMWNCIGHE 562 (701)
Q Consensus 553 I~iWd~~~~~ 562 (701)
|.--.++...
T Consensus 324 Vl~v~v~e~~ 333 (494)
T 1bpo_A 324 VLSVCVEEEN 333 (494)
T ss_dssp EEEEEECTTT
T ss_pred EEEEEEcccc
Confidence 8888887665
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.84 E-value=0.0037 Score=71.04 Aligned_cols=199 Identities=8% Similarity=-0.025 Sum_probs=120.0
Q ss_pred cCeEEEEEecCC-eEEEE-ECCCcEEEEECCC----Ceeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC
Q 005352 355 GEILDLSWSKNN-YLLSA-SIDKTVRLWRVGN----DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~-s~dg~I~iWd~~~----~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~ 427 (701)
..+..|+|.+.+ .|+.+ ...+.|+.+++.. ......+. .-.....|++.+..++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 456688998865 55444 4567899999875 22222222 12345678887645666666566788999998876
Q ss_pred cEEEEecC-CCcEEEEEEeeCCCeEEEEec--CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 428 HVVDWVDI-RQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 428 ~~~~~~~~-~~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
....+... ......|+++|.+..|+.+.. .+.|..+++....... + .........+|++.|.++.++++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~-----l---~~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-----L---VTENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE-----E---SCSSCSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE-----E---EeCCCCCccEEEEeccCCEEEEE
Confidence 55444332 245678899997666665543 2678877776433211 0 01122456789999966677777
Q ss_pred EECCCcEEEEeCCccce-eeec-ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 505 SCADSQVRILQGPNVIG-KYKG-LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 505 ~s~dg~I~iwd~~~~~~-~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
-+..+.|..+++..... .+.. .........+++..+ .++++....+.|..++..+++
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 77788999999863221 1211 112233445666544 444555567889999876654
No 297
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.79 E-value=0.45 Score=47.44 Aligned_cols=190 Identities=8% Similarity=0.101 Sum_probs=119.9
Q ss_pred EecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC-cEEEEecC-----
Q 005352 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWVDI----- 435 (701)
Q Consensus 362 ~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~----- 435 (701)
.+|...+++--...++.++|+++.+.++.+.....|.--.|- +.+.|+-.+ +..|+-|++... ..++.+..
T Consensus 74 MnP~~~ViALrag~~LQiFnletK~klks~~~~e~VvfWkWi--s~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~ 150 (365)
T 2xzh_A 74 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA 150 (365)
T ss_dssp ECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCEEEEEEC--SSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGT
T ss_pred eCCCccEEEEecCCeEEEechHHhhhhcceecCCccEEEEec--CCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcc
Confidence 366653222223688999999999999999988889888886 566777666 568999999742 34444332
Q ss_pred CCcEEEEEEeeCCCeEEEEec-------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE--ecCCCCEEEEEE
Q 005352 436 RQIVTAVCYRPDGQGGIVGSM-------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF--LPQDSSKVMVSC 506 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~-------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~p~~~~~l~~~s 506 (701)
...|..-..+++.++++..+- .|.+.+|..+.+..+.. ..|......+.+ .+....+++.+.
T Consensus 151 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i---------eGhaa~F~~~~~~g~~~~~~lf~fa~ 221 (365)
T 2xzh_A 151 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI---------EGHAASFAQFKMEGNAEESTLFCFAV 221 (365)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEE---------CCSEEEEEEECCTTCSSCEEEEEEEE
T ss_pred cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccccee---------eeeeeeeEEEecCCCCCCceEEEEEE
Confidence 345777777888888776543 46788999887653321 111111111111 010111222222
Q ss_pred C---CCcEEEEeCCcc---ceeee---------cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 507 A---DSQVRILQGPNV---IGKYK---------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 507 ~---dg~I~iwd~~~~---~~~~~---------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
. .++++|.++... ...|. ......-..++..++....+..-+.-|.|++||+.++..
T Consensus 222 r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 222 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp EETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred ecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcE
Confidence 2 258999987432 11111 111345667888999888999999999999999999873
No 298
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.78 E-value=0.38 Score=49.33 Aligned_cols=190 Identities=12% Similarity=0.041 Sum_probs=93.6
Q ss_pred cCeEEEEEecC----CeEEEE-ECC-----CcEEEEECCCCe-----e-eeeecC----CCCeEEEEEeeCCCCEEEEEE
Q 005352 355 GEILDLSWSKN----NYLLSA-SID-----KTVRLWRVGNDH-----C-LRVFPH----SNYVTCVHFNPVDDNYFISGS 414 (701)
Q Consensus 355 ~~I~~l~~s~~----~~l~s~-s~d-----g~I~iWd~~~~~-----~-~~~~~h----~~~V~~l~f~p~~~~~l~sgs 414 (701)
.....|+++|+ +.|+.+ ... ..|..|+...+. . +..+.. ......++|.| ++.++++.+
T Consensus 75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 45678899997 444333 322 567778776431 1 111221 12346899999 887777643
Q ss_pred c-------------CCcEEEEeCCCC--------------cEEEEecCCCcEEEEEEee-CCCeEEEEecCCcE------
Q 005352 415 I-------------DGKVRIWAVLSC--------------HVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDC------ 460 (701)
Q Consensus 415 ~-------------dg~v~iwd~~~~--------------~~~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v------ 460 (701)
. .|.|.-++.... ..+...++ .....++|+| ++..+++-...+.+
T Consensus 154 ~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~d 232 (352)
T 2ism_A 154 EVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHD 232 (352)
T ss_dssp CTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCC
T ss_pred CCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCe
Confidence 2 145655665431 01111122 3367789999 55544443322221
Q ss_pred EEEECCCCeee----eee-----eEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce------eeec
Q 005352 461 RFYNVSDNHLE----LDA-----EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG------KYKG 525 (701)
Q Consensus 461 ~i~d~~~~~~~----~~~-----~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~------~~~~ 525 (701)
.+.-+..+... ... ..........+.....+++|. ++.++++....+.|...+...... ....
T Consensus 233 ei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~ 310 (352)
T 2ism_A 233 EVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETA 310 (352)
T ss_dssp EEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchhee
Confidence 12222222100 000 000000000122345677773 456666666677787776653221 1111
Q ss_pred ccCCCCeEEEEEecCCCEEEEEe
Q 005352 526 LRRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 526 ~~~~~~v~~l~~s~dg~~l~sgs 548 (701)
......+..+++.|||.+.++..
T Consensus 311 ~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 311 LSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EESSCCEEEEEECTTSCEEEEEC
T ss_pred cccCCCeeEEEECCCCcEEEEEe
Confidence 12346789999999998776654
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.77 E-value=0.038 Score=59.30 Aligned_cols=158 Identities=12% Similarity=0.094 Sum_probs=101.0
Q ss_pred CeEEEEEeeC-CCCEEEEEEcCCcEEEEeCCCCcEEEEecCC----CcEEEEEE-------eeCCCeEEEEecCC-c---
Q 005352 396 YVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVVDWVDIR----QIVTAVCY-------RPDGQGGIVGSMMG-D--- 459 (701)
Q Consensus 396 ~V~~l~f~p~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~----~~i~~i~~-------sp~g~~l~~gs~dg-~--- 459 (701)
....|+|.|. .++++++-...+.|++.|+.++.+..+.... .....++| +++++.|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4778999983 3555565555577999999988877665432 25899999 99999777776654 2
Q ss_pred ---EEEEECCC-Ceeee--e-eeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC-------ccce----
Q 005352 460 ---CRFYNVSD-NHLEL--D-AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-------NVIG---- 521 (701)
Q Consensus 460 ---v~i~d~~~-~~~~~--~-~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~-------~~~~---- 521 (701)
|.+++... +.... . ..+. . .....+++++|.++.++++-..++.|+.+|.. +...
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~--~-----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~ 292 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA--A-----YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI 292 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE--E-----ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred CceEEEEecCCCCceeecccceeec--c-----CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence 55565333 12210 0 0111 1 12345778899667777777788899999976 2221
Q ss_pred ---------eeecccCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCC
Q 005352 522 ---------KYKGLRRSGNQLSACFTSDGKHIVSA-GEDSNVYMWNCIG 560 (701)
Q Consensus 522 ---------~~~~~~~~~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~ 560 (701)
.+...........++|+|+|++|+.+ +....|+.++++.
T Consensus 293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 11111233456899999999965544 5667888876543
No 300
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.74 E-value=0.53 Score=48.86 Aligned_cols=178 Identities=9% Similarity=0.108 Sum_probs=115.7
Q ss_pred CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC-cEEEEecC-----CCcEEEEEEeeC
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWVDI-----RQIVTAVCYRPD 447 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~-----~~~i~~i~~sp~ 447 (701)
..++.|+|+++.+.++.+.....|.--.|-. .+.|+..+ +..|+-|++... ..++.+.. ...|..-..+++
T Consensus 85 g~~lQiFnle~K~klks~~~~e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~ 161 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAK 161 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTT
T ss_pred CCeEEEEchHHhhhhcceecCCCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCC
Confidence 6899999999999999999888888888874 56666665 668999999642 33343332 345777778888
Q ss_pred CCeEEEEec-------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe--cCCCCEEEEEEC---CCcEEEEe
Q 005352 448 GQGGIVGSM-------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL--PQDSSKVMVSCA---DSQVRILQ 515 (701)
Q Consensus 448 g~~l~~gs~-------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--p~~~~~l~~~s~---dg~I~iwd 515 (701)
.++++..+- .|.+.+|..+.+..+. ..+|......+.+. +....+++.+.. .++++|.+
T Consensus 162 ~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~---------ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~E 232 (494)
T 1bpo_A 162 QKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---------IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE 232 (494)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEEESTTCCEEE---------ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEE
T ss_pred CCeEEEEeecccCCcccceEEEeeccccccch---------heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEE
Confidence 998876432 4678899988654321 11111111111111 000122333332 37899998
Q ss_pred CCcc---ceee---------ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 516 GPNV---IGKY---------KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 516 ~~~~---~~~~---------~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+... ...| .......-..++..++....+..-+.-|.|++||+.++..
T Consensus 233 i~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 233 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp CSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred cCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence 7532 1111 1112345567889999999999999999999999999874
No 301
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.66 E-value=0.46 Score=48.79 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=40.1
Q ss_pred CCeeEEEEecC------CCCEEEEEECCCcEEEEeCCccc--eeeecc-cCCCCeEEEEEecCCCEEEEEe-CCCcE
Q 005352 487 KRITGFQFLPQ------DSSKVMVSCADSQVRILQGPNVI--GKYKGL-RRSGNQLSACFTSDGKHIVSAG-EDSNV 553 (701)
Q Consensus 487 ~~i~~l~~~p~------~~~~l~~~s~dg~I~iwd~~~~~--~~~~~~-~~~~~v~~l~~s~dg~~l~sgs-~Dg~I 553 (701)
....++.|... ++.++++....+.|...++.... ...... .....+..+++.|||.+.++.. .+|.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 35677888642 35666666667788777765321 111111 1245789999999998666543 34443
No 302
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.66 E-value=0.26 Score=54.84 Aligned_cols=200 Identities=4% Similarity=-0.068 Sum_probs=119.9
Q ss_pred cCeEEEEEecCC-eEEEE-ECCCcEEEEECCCCee-eeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 355 GEILDLSWSKNN-YLLSA-SIDKTVRLWRVGNDHC-LRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~-s~dg~I~iWd~~~~~~-~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
.....|+|++.+ .|+-+ ...+.|..+++..... ...+. .-.....+++.+..++++++-...+.|.+.++......
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 456788999855 55444 4567888888876532 22333 22578899999845556666666789999999866543
Q ss_pred EEe-cCCCcEEEEEEeeCCCeEEEEec--CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 431 DWV-DIRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 431 ~~~-~~~~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
.+. ..-.....|++.|.+..|+.... .+.|...++........ . ........++++.+.++.++++-..
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l----~----~~~~~~P~Glald~~~~~LY~aD~~ 191 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII----I----NSEIYWPNGLTLDYEEQKLYWADAK 191 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----E----CSSCSSEEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE----E----eCCCCCCcEEEEEccCCEEEEEeCC
Confidence 333 33455788999997666666653 35677777765432211 0 1123567899999865666666666
Q ss_pred CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 508 DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 508 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.+.|..+|...................+++..+ ...++-...+.|...|..+++.
T Consensus 192 ~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp TCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred CCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 788999887642222111111223346666555 3334444667899999877764
No 303
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.63 E-value=0.61 Score=47.22 Aligned_cols=151 Identities=11% Similarity=0.043 Sum_probs=85.5
Q ss_pred ccCeEEEEEecCCeEEEEECCCcEEE-EEC--CCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 354 SGEILDLSWSKNNYLLSASIDKTVRL-WRV--GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 354 ~~~I~~l~~s~~~~l~s~s~dg~I~i-Wd~--~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
...+..+.+.+++.++..+..+.+.. +|- .+-+.+. ......+..+.+.+ ++.++ .++.+|.+++.+...++.-
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~-~g~~~-~~~~~G~~~~s~~D~G~tW 238 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTP-DGRLW-MIVNGGKIAFSDPDNSENW 238 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECT-TSCEE-EEETTTEEEEEETTEEEEE
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC-CCCCCccceeEECC-CCCEE-EEeCCceEEEecCCCCCee
Confidence 34677888988884444555555544 342 2233332 23456788999988 66655 4556788777653334332
Q ss_pred EEec-----CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE
Q 005352 431 DWVD-----IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 431 ~~~~-----~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
.... ....+.++.+.+++..++++. +|.+ ++....++.- ............+..+.|.+ ...++++
T Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW-----~~~~~~~~~~~~~~~v~~~~--~~~~~~~ 309 (327)
T 2xbg_A 239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTW-----QQDVDVKKVPSNFYKILFFS--PDQGFIL 309 (327)
T ss_dssp CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSC-----EECGGGTTSSSCCCEEEEEE--TTEEEEE
T ss_pred EeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCccc-----EEcCccCCCCCCeEEEEEEC--CCceEEE
Confidence 2221 123588999998877666654 6666 3444433211 00010111124567788865 3457777
Q ss_pred ECCCcEEEEeC
Q 005352 506 CADSQVRILQG 516 (701)
Q Consensus 506 s~dg~I~iwd~ 516 (701)
+.+|.|.-++.
T Consensus 310 G~~G~i~~~~~ 320 (327)
T 2xbg_A 310 GQKGILLRYVT 320 (327)
T ss_dssp CSTTEEEEECC
T ss_pred cCCceEEEEcC
Confidence 88898877664
No 304
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.56 E-value=0.14 Score=53.09 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=96.9
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCcEEEEecCC-----CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee-------
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-----QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD------- 473 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-----~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~------- 473 (701)
++..++.+- ++.||.-++......+..... ..|..+..+|+|++|++.+. ..|.+..+..+.....
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence 666666654 578888887744323333222 25788999999999998865 6899998884321111
Q ss_pred ---eeEEeecccCCCCCCeeEEEEecCC--CCEEEEEECCCcEEEEeCCccce---ee-------ecccCCCCeEEEEEe
Q 005352 474 ---AEICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPNVIG---KY-------KGLRRSGNQLSACFT 538 (701)
Q Consensus 474 ---~~~~~~~~~~~~~~~i~~l~~~p~~--~~~l~~~s~dg~I~iwd~~~~~~---~~-------~~~~~~~~v~~l~~s 538 (701)
..+.+.........+|..+.|+|-. +..|++-..|+.|++||+..... .+ ........|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 0111111112235789999999953 45899999999999999874110 11 111123678899999
Q ss_pred cCCCEEEEEe--CCCcEEEEe
Q 005352 539 SDGKHIVSAG--EDSNVYMWN 557 (701)
Q Consensus 539 ~dg~~l~sgs--~Dg~I~iWd 557 (701)
+++-.|...+ ..|.|+-.-
T Consensus 189 ~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEES
T ss_pred CCCcEEEEEecCCCCCEEEEC
Confidence 9887666654 788887654
No 305
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.55 E-value=0.8 Score=46.32 Aligned_cols=191 Identities=9% Similarity=0.041 Sum_probs=102.6
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeee--cCCCCeEEEEEeeCCCCEEEEEEcCCcEE-EEeC--CCCcE
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVR-IWAV--LSCHV 429 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~~~~~l~sgs~dg~v~-iwd~--~~~~~ 429 (701)
..+..|.+.+++.++.++.++.|..- ...++.-... .....+..+++.| ++.+++.+. +|.+. -+|- .+-+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 45677877777755555556654321 2223322222 2456789999998 777776654 45443 3442 22222
Q ss_pred EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc-CCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK-KAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 430 ~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
+. ......+..+.+.++++.+ +++.+|.+++.+...++. .. ..... ......+..+.+.+ ++.+++ ++.+
T Consensus 199 ~~-~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t-W~----~~~~~~~~~~~~~~~v~~~~-~~~~~~-~g~~ 269 (327)
T 2xbg_A 199 HN-RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN-WG----ELLSPLRRNSVGFLDLAYRT-PNEVWL-AGGA 269 (327)
T ss_dssp EE-CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE-EC----CCBCTTSSCCSCEEEEEESS-SSCEEE-EEST
T ss_pred CC-CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe-eE----eccCCcccCCcceEEEEecC-CCEEEE-EeCC
Confidence 22 2345678899999988655 445678777664221211 10 00000 11223578888887 445444 4557
Q ss_pred CcEEEE-eCC-ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 509 SQVRIL-QGP-NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 509 g~I~iw-d~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
+.|..- |.. +.............+.++.|.+++ .++.++.+|.|.-++-
T Consensus 270 g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 270 GALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp TCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred CeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 766432 221 221111111123567888887655 4666778998877763
No 306
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.45 E-value=0.18 Score=50.35 Aligned_cols=185 Identities=16% Similarity=0.183 Sum_probs=96.1
Q ss_pred CC-eEEEEECC-----CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCC-----cEEEEeCCCCcEEE
Q 005352 365 NN-YLLSASID-----KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG-----KVRIWAVLSCHVVD 431 (701)
Q Consensus 365 ~~-~l~s~s~d-----g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg-----~v~iwd~~~~~~~~ 431 (701)
++ .++.|+.+ ..+.+||..+.+-...-. ....-.+++.. ++.+++.|+.++ .+.+||+.+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 44 55556544 358889988876443322 21111222222 667778887653 47889988876544
Q ss_pred EecCCCc--EEEEEEeeCCCeEEEEecC-------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 432 WVDIRQI--VTAVCYRPDGQGGIVGSMM-------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 432 ~~~~~~~--i~~i~~sp~g~~l~~gs~d-------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
......+ -.+++. .+++.++.|+.+ ..+.+||+.++.......+ ....... ++... ++.++
T Consensus 139 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~------p~~r~~~-~~~~~--~~~iy 208 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM------STRRSGA-GVGVL--NNLLY 208 (302)
T ss_dssp ECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCC------SSCCBSC-EEEEE--TTEEE
T ss_pred cCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCC------ccccccc-cEEEE--CCEEE
Confidence 3322211 112222 366677776542 4588999988876432111 1111111 22222 46777
Q ss_pred EEEECC-----CcEEEEeCCccceee-ecccCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEeCCCCC
Q 005352 503 MVSCAD-----SQVRILQGPNVIGKY-KGLRRSGNQLSACFTSDGKHIVSAGEDS-----NVYMWNCIGHE 562 (701)
Q Consensus 503 ~~~s~d-----g~I~iwd~~~~~~~~-~~~~~~~~v~~l~~s~dg~~l~sgs~Dg-----~I~iWd~~~~~ 562 (701)
+.|+.+ ..+.+||..+..-.. ........-.+++ ..++++++.|+.++ .+.+||+.+.+
T Consensus 209 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 209 AVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 777764 468889986432111 1111111111122 23667777777553 47888876653
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.30 E-value=0.6 Score=47.89 Aligned_cols=189 Identities=11% Similarity=0.029 Sum_probs=96.0
Q ss_pred cCeEEEEEecC----CeEEEEEC----C----CcEEEEECCCC-------eee-eeec--CCCCeEEEEEeeCCCCEEEE
Q 005352 355 GEILDLSWSKN----NYLLSASI----D----KTVRLWRVGND-------HCL-RVFP--HSNYVTCVHFNPVDDNYFIS 412 (701)
Q Consensus 355 ~~I~~l~~s~~----~~l~s~s~----d----g~I~iWd~~~~-------~~~-~~~~--h~~~V~~l~f~p~~~~~l~s 412 (701)
.....|+++|+ +.|+.+.. + ..|..|+.... +.+ ..+. .......|+|.| ++.++++
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt 151 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYIT 151 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEE
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEE
Confidence 45678899987 44443332 3 56777776543 111 1122 112356799999 8887776
Q ss_pred EEc-------------CCcEEEEeCCCC---------cEEEEecCCCcEEEEEEee-CCCeEEEEecCC---cEEEEECC
Q 005352 413 GSI-------------DGKVRIWAVLSC---------HVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMG---DCRFYNVS 466 (701)
Q Consensus 413 gs~-------------dg~v~iwd~~~~---------~~~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg---~v~i~d~~ 466 (701)
.+. .|.|.-++.... ..+...++ .....++|+| +++.+++-...+ .|.+..
T Consensus 152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~-- 228 (354)
T 3a9g_A 152 TGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL-- 228 (354)
T ss_dssp CCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--
T ss_pred ECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--
Confidence 432 245555555432 01122222 2356799999 555444432221 133322
Q ss_pred CCeee----------e-eeeEEeecccCCCCCCeeEEEEec------CCCCEEEEEECCCcEEEEeCCccce---eeecc
Q 005352 467 DNHLE----------L-DAEICVHSKKKAPCKRITGFQFLP------QDSSKVMVSCADSQVRILQGPNVIG---KYKGL 526 (701)
Q Consensus 467 ~~~~~----------~-~~~~~~~~~~~~~~~~i~~l~~~p------~~~~~l~~~s~dg~I~iwd~~~~~~---~~~~~ 526 (701)
.+... . ........ .........++.|.. .++.++++....+.|...++..... .....
T Consensus 229 ~G~nyGwp~~~g~~~~~~~~~p~~~-~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~ 307 (354)
T 3a9g_A 229 KGGNYGWPLATGKAGRGEFVDPVID-TGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF 307 (354)
T ss_dssp TTCBCCTTTCCSCCCCTTSCCCSEE-CTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC
T ss_pred CCCcCCCCcccCCCCCCCCcCCEee-cCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec
Confidence 11100 0 00000000 001234577888842 2456666666677888888764211 11111
Q ss_pred -cCCCCeEEEEEecCCCEEEEEe
Q 005352 527 -RRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 527 -~~~~~v~~l~~s~dg~~l~sgs 548 (701)
.....+..+++.|||.+.++..
T Consensus 308 ~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 308 KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCCCeeEEEECCCCcEEEEEe
Confidence 1245789999999998766664
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.28 E-value=0.24 Score=49.31 Aligned_cols=181 Identities=13% Similarity=0.023 Sum_probs=95.6
Q ss_pred eEEEEECC-----CcEEEEECCCCe---eeee--ecCCCCeEEEEEeeCCCCEEEEEEcC-----CcEEEEeCCCCcEEE
Q 005352 367 YLLSASID-----KTVRLWRVGNDH---CLRV--FPHSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVD 431 (701)
Q Consensus 367 ~l~s~s~d-----g~I~iWd~~~~~---~~~~--~~h~~~V~~l~f~p~~~~~l~sgs~d-----g~v~iwd~~~~~~~~ 431 (701)
.++.|+.+ ..+.+||+.+.+ .... +.....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 142 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM 142 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE
Confidence 55556544 468899988766 3322 2222111222222 66777777654 358899998876443
Q ss_pred EecCCC---cEEEEEEeeCCCeEEEEecC-----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 432 WVDIRQ---IVTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 432 ~~~~~~---~i~~i~~sp~g~~l~~gs~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
...... ...++. .+++.++.|+.+ ..+.+||+.++....... ..........+.+ ++.+++
T Consensus 143 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~------~p~~r~~~~~~~~---~~~i~v 211 (301)
T 2vpj_A 143 LGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP------MATKRSGAGVALL---NDHIYV 211 (301)
T ss_dssp EEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC------CSSCCBSCEEEEE---TTEEEE
T ss_pred CCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC------CCcccccceEEEE---CCEEEE
Confidence 332221 122222 267777777654 458999998887643211 1111111222222 467777
Q ss_pred EEECC-----CcEEEEeCCccceeee--cccCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCC
Q 005352 504 VSCAD-----SQVRILQGPNVIGKYK--GLRRSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGHE 562 (701)
Q Consensus 504 ~~s~d-----g~I~iwd~~~~~~~~~--~~~~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~~ 562 (701)
.|+.+ ..+.+||..+..-... ..........+ .-++++++.|+.+ ..|.+||+.+.+
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT--VLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE--EECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 77764 4688999874322111 11111111222 2366777777655 357788876643
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.13 E-value=0.011 Score=67.12 Aligned_cols=179 Identities=7% Similarity=-0.081 Sum_probs=106.7
Q ss_pred CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE-EEEcCCcEEEEeCCC----CcEEEEec-CCCcEEEEEEeeC
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGKVRIWAVLS----CHVVDWVD-IRQIVTAVCYRPD 447 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~dg~v~iwd~~~----~~~~~~~~-~~~~i~~i~~sp~ 447 (701)
.+.|+..++...+....+.....+..|+|.+ ....|+ +-...+.|+.+++.. ........ ....+..|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 4578888888777666555555677899998 554444 444567899999875 22222221 1223566888865
Q ss_pred CCeEEE-EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-CcEEEEeCCccceeeec
Q 005352 448 GQGGIV-GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-SQVRILQGPNVIGKYKG 525 (701)
Q Consensus 448 g~~l~~-gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-g~I~iwd~~~~~~~~~~ 525 (701)
+..|++ -...+.|.++++........ . .........+++.|..+.++++-... +.|.++++.........
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l----~----~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTL----F----REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEE----C----CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEE----E----eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 544444 45578899999876543211 0 11123456788888555555544333 78888776532222211
Q ss_pred ccCCCCeEEEEEecCCCEEE-EEeCCCcEEEEeCCCC
Q 005352 526 LRRSGNQLSACFTSDGKHIV-SAGEDSNVYMWNCIGH 561 (701)
Q Consensus 526 ~~~~~~v~~l~~s~dg~~l~-sgs~Dg~I~iWd~~~~ 561 (701)
.........|+|+|++..|+ +-+..+.|..++++..
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 11234567899998765554 4456678999998753
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.00 E-value=0.55 Score=46.79 Aligned_cols=183 Identities=12% Similarity=0.072 Sum_probs=96.8
Q ss_pred CC-eEEEEECC----CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcC------CcEEEEeCCCCcEEE
Q 005352 365 NN-YLLSASID----KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVVD 431 (701)
Q Consensus 365 ~~-~l~s~s~d----g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~d------g~v~iwd~~~~~~~~ 431 (701)
++ .++.|+.+ ..+.+||+.+.+....-. ....-.+++. - ++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA-A-EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE-E-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE-E-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 44 55566544 568889988876544322 1111112222 2 66777777765 458999998876544
Q ss_pred EecCCC---cEEEEEEeeCCCeEEEEec---------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 432 WVDIRQ---IVTAVCYRPDGQGGIVGSM---------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 432 ~~~~~~---~i~~i~~sp~g~~l~~gs~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
...... ....+. .+++.++.|+. -..+.+||+.+........ ........ ++... ++
T Consensus 133 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~-~~~~~--~~ 201 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP------MIEARKNH-GLVFV--KD 201 (306)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC------CSSCCBSC-EEEEE--TT
T ss_pred CCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC------ccchhhcc-eEEEE--CC
Confidence 322211 122222 36666677654 3458899999886543221 11111111 22222 45
Q ss_pred CEEEEEECC-----CcEEEEeCCccceee--ecccCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCC
Q 005352 500 SKVMVSCAD-----SQVRILQGPNVIGKY--KGLRRSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGHE 562 (701)
Q Consensus 500 ~~l~~~s~d-----g~I~iwd~~~~~~~~--~~~~~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~~ 562 (701)
.+++.|+.+ ..+.+||..+..-.. ...........+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 202 ~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 202 KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 677777653 468888876432111 11111112222222 67777888754 457888876653
No 311
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.98 E-value=3.1 Score=47.45 Aligned_cols=193 Identities=10% Similarity=0.072 Sum_probs=113.8
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 433 (701)
..|.++....++.|..++.+| +..||..+.+...... ....|.++.. . ++ .|..++.+ .|..||..+++.....
T Consensus 63 ~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~-~g-~lWigt~~-Gl~~~~~~~~~~~~~~ 137 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-Q-GD-TLWLGALN-GLYTYQLQSRKLTSFD 137 (758)
T ss_dssp SCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-E-TT-EEEEEETT-EEEEEETTTCCEEEEC
T ss_pred ceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-c-CC-cEEEEcCC-cceeEeCCCCeEEEec
Confidence 468888777778777777665 7889988765433111 2335777654 3 44 56666655 6888998877655441
Q ss_pred c-----CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 434 D-----IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 434 ~-----~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
. ....|.++....+|... +|+.. -+..|+..+...... ............|.++...+ ++..|.+|+.
T Consensus 138 ~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~---~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~- 210 (758)
T 3ott_A 138 TRRNGLPNNTIYSIIRTKDNQIY-VGTYN-GLCRYIPSNGKFEGI---PLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE- 210 (758)
T ss_dssp HHHHCCSCSCEEEEEECTTCCEE-EEETT-EEEEEETTTTEEEEE---CCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-
T ss_pred cCCCCcCCCeEEEEEEcCCCCEE-EEeCC-CHhhCccCCCceEEe---cCCCccccccceeEEEEEEC-CCCEEEEEEC-
Confidence 1 23458888877777644 45554 477888877654311 11110111223477777665 4455555654
Q ss_pred CcEEEEeCCccce-eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 509 SQVRILQGPNVIG-KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 509 g~I~iwd~~~~~~-~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+-+..+|..+... .+... ....|.++....+|.+.+. +.+ -+.+++..+..
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~ 262 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAF-HNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTP 262 (758)
T ss_dssp EEEEEEETTTTEEEEEEEE-EEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSC
T ss_pred CCCeEEcCCCCeEEeccCC-CCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCc
Confidence 4678888754321 12111 2345788888888876654 444 57888876543
No 312
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.89 E-value=0.8 Score=45.85 Aligned_cols=172 Identities=9% Similarity=0.033 Sum_probs=87.2
Q ss_pred EEEEECCCCeeeeeecCCCCe--EEEEEeeCCCCEEEEEEcC--------CcEEEEeCCCCcEEEEecCCCc--EEEEEE
Q 005352 377 VRLWRVGNDHCLRVFPHSNYV--TCVHFNPVDDNYFISGSID--------GKVRIWAVLSCHVVDWVDIRQI--VTAVCY 444 (701)
Q Consensus 377 I~iWd~~~~~~~~~~~h~~~V--~~l~f~p~~~~~l~sgs~d--------g~v~iwd~~~~~~~~~~~~~~~--i~~i~~ 444 (701)
+.+||..+.+-...-....+- .+++.. ++.+++.|+.+ ..+.+||+.+.+-........+ -.+++
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~- 145 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL- 145 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE-
Confidence 778888887653322211111 122222 56677777642 4589999988754433222111 11122
Q ss_pred eeCCCeEEEEec------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC-----cEEE
Q 005352 445 RPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS-----QVRI 513 (701)
Q Consensus 445 sp~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg-----~I~i 513 (701)
..+++.++.|+. -..+.+||+.+........+ .........+.+ ++.+++.|+.++ .+.+
T Consensus 146 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~------p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 146 SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM------QTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCC------SSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEE
T ss_pred EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCC------CCchhceEEEEE---CCEEEEEeccCCCCccceEEE
Confidence 246667777766 24689999998865432211 111111122222 567888887654 4788
Q ss_pred EeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCCC--------------cEEEEeCCCC
Q 005352 514 LQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGEDS--------------NVYMWNCIGH 561 (701)
Q Consensus 514 wd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg--------------~I~iWd~~~~ 561 (701)
||..+..-.... ......-.+++ .-++++++.|+.++ .|.+||+.+.
T Consensus 217 yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 217 YSITDNKWAPFEAFPQERSSLSLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred EECCCCeEEECCCCCCcccceeEE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 887643211111 11111111222 23667777776532 3667776654
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.80 E-value=1.5 Score=44.69 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=80.9
Q ss_pred eEEEEEec--CC--eEEEEEC---CCcEEEEECCCC--e--eeeeecC--CCCeEEEEEeeCCCCEEEEEEc--------
Q 005352 357 ILDLSWSK--NN--YLLSASI---DKTVRLWRVGND--H--CLRVFPH--SNYVTCVHFNPVDDNYFISGSI-------- 415 (701)
Q Consensus 357 I~~l~~s~--~~--~l~s~s~---dg~I~iWd~~~~--~--~~~~~~h--~~~V~~l~f~p~~~~~l~sgs~-------- 415 (701)
...|.+.+ ++ +|+.+.. +.+|.+|++... . .+..+.+ -...+.+.+.+ ++.++++...
T Consensus 114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~ 192 (355)
T 3sre_A 114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLK 192 (355)
T ss_dssp EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHH
T ss_pred eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccc
Confidence 44555544 33 4555533 456778776543 2 2223332 34688999999 8877776531
Q ss_pred ---------CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCC-eeeeeeeEEeecccCC
Q 005352 416 ---------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDN-HLELDAEICVHSKKKA 484 (701)
Q Consensus 416 ---------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~ 484 (701)
.|.|..+|. +++......-...+.++|+||++.|+++. ..+.|..|++... .+.....+ .
T Consensus 193 ~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~---~---- 263 (355)
T 3sre_A 193 SWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL---S---- 263 (355)
T ss_dssp HHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE---E----
T ss_pred cchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE---e----
Confidence 244555554 33333333345688999999998887765 5788999998743 32221111 1
Q ss_pred CCCCeeEEEEecCCCCEEEEEE
Q 005352 485 PCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s 506 (701)
.......+++.+.++.+.+++.
T Consensus 264 ~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 264 FDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp CSSEEEEEEECTTTCCEEEEEE
T ss_pred CCCCCceEEEeCCCCcEEEEec
Confidence 1245677777762255555454
No 314
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.67 E-value=2.7 Score=44.54 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=32.5
Q ss_pred CCEEEEEECCCcEEEEeCCcc-c---ee-eecccCCCCeEEEEEecCCC-EEEEEeCCCcEE
Q 005352 499 SSKVMVSCADSQVRILQGPNV-I---GK-YKGLRRSGNQLSACFTSDGK-HIVSAGEDSNVY 554 (701)
Q Consensus 499 ~~~l~~~s~dg~I~iwd~~~~-~---~~-~~~~~~~~~v~~l~~s~dg~-~l~sgs~Dg~I~ 554 (701)
+.+++..-..+.|....+... . .. .........+..+++.|||. ++++.+..|.|+
T Consensus 369 g~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~~~R~~dv~~gpDG~~Lyv~~d~~G~i~ 430 (454)
T 1cru_A 369 NTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNVQ 430 (454)
T ss_dssp TEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCEE
T ss_pred CcEEEeecCCCEEEEEEECCCCCeeeeeeeeecccCCCceeEEECCCCCEEEEEECCCCCCc
Confidence 334444444667776665531 1 11 12222346899999999997 666655566654
No 315
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.64 E-value=0.99 Score=45.22 Aligned_cols=131 Identities=12% Similarity=0.089 Sum_probs=69.5
Q ss_pred EEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcC-------CcEEEEeCCCCcEEEEecCCCcEE-EEEEee
Q 005352 377 VRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-------GKVRIWAVLSCHVVDWVDIRQIVT-AVCYRP 446 (701)
Q Consensus 377 I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~d-------g~v~iwd~~~~~~~~~~~~~~~i~-~i~~sp 446 (701)
+.+||..+.+-...-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-........+.. ..+...
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH 157 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence 7778887776543322 11111222222 66777777764 248889998876544332222211 111224
Q ss_pred CCCeEEEEec------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-----CcEEEEe
Q 005352 447 DGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----SQVRILQ 515 (701)
Q Consensus 447 ~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-----g~I~iwd 515 (701)
+++.++.|+. -..+.+||+.++....... ........ +++.. ++.+++.|+.+ ..+.+||
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 228 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP------MKTPRSMF-GVAIH--KGKIVIAGGVTEDGLSASVEAFD 228 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECC------CSSCCBSC-EEEEE--TTEEEEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCC------CCCCcccc-eEEEE--CCEEEEEcCcCCCCccceEEEEE
Confidence 6777777764 2458999999887543221 11111111 22222 46777777753 3467788
Q ss_pred CCc
Q 005352 516 GPN 518 (701)
Q Consensus 516 ~~~ 518 (701)
..+
T Consensus 229 ~~~ 231 (318)
T 2woz_A 229 LKT 231 (318)
T ss_dssp TTT
T ss_pred CCC
Confidence 764
No 316
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.47 E-value=0.55 Score=46.92 Aligned_cols=173 Identities=10% Similarity=0.025 Sum_probs=89.5
Q ss_pred CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcC-----CcEEEEeCCCCcEEEEecCC---CcEEEEEE
Q 005352 375 KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVDWVDIR---QIVTAVCY 444 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~d-----g~v~iwd~~~~~~~~~~~~~---~~i~~i~~ 444 (701)
..+.+||+.+.+....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-....... .....+.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 468889988876443322 11111122222 56777776643 35889999887644332221 11222222
Q ss_pred eeCCCeEEEEecC-----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-----CcEEEE
Q 005352 445 RPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----SQVRIL 514 (701)
Q Consensus 445 sp~g~~l~~gs~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-----g~I~iw 514 (701)
+++.++.|+.+ ..+.+||+.+........ ..........+.+ ++.+++.|+.+ ..+.+|
T Consensus 168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA------MNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC------CSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEE
T ss_pred --CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC------CCCccccceEEEE---CCEEEEEeCCCCCCccceEEEE
Confidence 66777777654 458999998877543221 1111111222222 46777777764 568899
Q ss_pred eCCccceeee-cccCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCC
Q 005352 515 QGPNVIGKYK-GLRRSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGH 561 (701)
Q Consensus 515 d~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~ 561 (701)
|..+..-... .......-.+++. -++++++.|+.+ ..+.+||+.+.
T Consensus 237 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 237 DVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp ETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 9864321111 1111111112222 266777777644 34677776654
No 317
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.44 E-value=0.22 Score=46.70 Aligned_cols=180 Identities=10% Similarity=0.029 Sum_probs=99.6
Q ss_pred eEEEEECCCcEEEEECCCCe------eeeeecC--CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc
Q 005352 367 YLLSASIDKTVRLWRVGNDH------CLRVFPH--SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~------~~~~~~h--~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 438 (701)
+|+....| +|+.=...++. ....+.. =..+..++|+| ++.+.++ .+|.+.-.+..+.....+......
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 56666666 55544443333 1222333 24678999999 8887776 678877777666443333333233
Q ss_pred E--------EEEEEeeCCCeEEEEecCCcEEEEECCCCeee-e-eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 439 V--------TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE-L-DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 439 i--------~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~-~-~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
| .++.|.|+|.+.++ .||.|.-++-.+.... . .....+ ....-..+..|.+.| ++.+.++. |
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~v---g~~gw~~~~~lff~p-~G~Lyav~--d 153 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEV---GSGGWSGFKFLFFHP-NGYLYAVH--G 153 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEE---ECSSGGGEEEEEECT-TSCEEEEE--T
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEe---ccCCCCceEEEEECC-CceEEEEe--C
Confidence 3 78999999988777 5698877765331110 0 000000 011124578899999 66666666 7
Q ss_pred CcEEEEeCCcc-------ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 509 SQVRILQGPNV-------IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 509 g~I~iwd~~~~-------~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+.++-...... .....+...-.....+.|+++|.+.+.. +| ++|....+.
T Consensus 154 g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~p~ 210 (236)
T 1tl2_A 154 QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYPPS 210 (236)
T ss_dssp TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESCCC
T ss_pred CcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCCcc
Confidence 77544332210 0111111122234457799999877666 66 555554443
No 318
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.43 E-value=1 Score=45.63 Aligned_cols=92 Identities=9% Similarity=-0.002 Sum_probs=56.0
Q ss_pred ECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEee-C-------CCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc
Q 005352 372 SIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNP-V-------DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (701)
Q Consensus 372 s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p-~-------~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 438 (701)
+.||.|..++..++.....+. ...++.. .-.| . .+..+++|+.+|.+...|+.+|+.+.......+
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence 578999999988876554443 2333332 1001 0 356788999999999999999999866654432
Q ss_pred EE--------EEEEe-----eCCCeEEEEecCCcEEEEE
Q 005352 439 VT--------AVCYR-----PDGQGGIVGSMMGDCRFYN 464 (701)
Q Consensus 439 i~--------~i~~s-----p~g~~l~~gs~dg~v~i~d 464 (701)
.. |.... ..+..++.+..+..+.+.+
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 11 11110 1235677777777777666
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.38 E-value=2.8 Score=42.74 Aligned_cols=189 Identities=8% Similarity=0.067 Sum_probs=106.2
Q ss_pred CeEEEEEecCCeEEEEE-------------CCCcEEEEECCCC--eeeeeec--------CCCCeEEEEEeeC-CCC--E
Q 005352 356 EILDLSWSKNNYLLSAS-------------IDKTVRLWRVGND--HCLRVFP--------HSNYVTCVHFNPV-DDN--Y 409 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s-------------~dg~I~iWd~~~~--~~~~~~~--------h~~~V~~l~f~p~-~~~--~ 409 (701)
..-++...++|.+++++ .+|.|.++|..+. +. ..+. .......|.+.+. ++. +
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 45577778888555555 6899999998742 22 2222 1236778887662 232 3
Q ss_pred EEEEEc--CCcEEEEeCCCC--cEE--EEecC--CCcEEEEEEeeCCCeEEEEec-----------------CCcEEEEE
Q 005352 410 FISGSI--DGKVRIWAVLSC--HVV--DWVDI--RQIVTAVCYRPDGQGGIVGSM-----------------MGDCRFYN 464 (701)
Q Consensus 410 l~sgs~--dg~v~iwd~~~~--~~~--~~~~~--~~~i~~i~~sp~g~~l~~gs~-----------------dg~v~i~d 464 (701)
+++-.. +..|.+|++... ... ....+ -...+.+.+.++|.+.++... .|.|..|+
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444333 456778776543 222 22222 245889999999987776541 24455554
Q ss_pred CCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc--ceeeecccCCCCeEEEEEec-CC
Q 005352 465 VSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--IGKYKGLRRSGNQLSACFTS-DG 541 (701)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~l~~s~-dg 541 (701)
. ++... ... .....++++|+|+...++++-+..+.|+.|++... .............-.+++.+ +|
T Consensus 210 ~--~~~~~----~~~-----~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 210 P--NDVRV----VAE-----GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTG 278 (355)
T ss_dssp T--TCCEE----EEE-----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTC
T ss_pred C--CeEEE----eec-----CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCC
Confidence 4 22111 011 11346899999943344455556889999997521 11111112235567788888 58
Q ss_pred CEEEEEeCC-CcEEEE
Q 005352 542 KHIVSAGED-SNVYMW 556 (701)
Q Consensus 542 ~~l~sgs~D-g~I~iW 556 (701)
++.+++..+ +.|..|
T Consensus 279 ~lwva~~~~g~~v~~~ 294 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFY 294 (355)
T ss_dssp CEEEEEESCHHHHHSC
T ss_pred cEEEEecCCceEEEEE
Confidence 877766544 334434
No 320
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.24 E-value=0.45 Score=49.36 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=94.9
Q ss_pred ecCC-eEEEEECCCcEEEEECCCCeeeeeecCC-----CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc--------
Q 005352 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHS-----NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-------- 428 (701)
Q Consensus 363 s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~-----~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-------- 428 (701)
+.++ .++.+- ++.||.-++......+.+... ..|..+..+| ++++|+..+ +..|.|-.+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 3445 444433 478888888755444444432 2588899999 999999886 6689999887321
Q ss_pred ----EEEEec-------CCCcEEEEEEee---CCCeEEEEecCCcEEEEECCCCeeeeeeeEEee---cccCCCCCCeeE
Q 005352 429 ----VVDWVD-------IRQIVTAVCYRP---DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH---SKKKAPCKRITG 491 (701)
Q Consensus 429 ----~~~~~~-------~~~~i~~i~~sp---~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~---~~~~~~~~~i~~ 491 (701)
....+. ...+|..+.|+| .+..|++-..|+.|++||+........ .+... -........|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 011111 246799999999 456899999999999999986221111 01000 011223367899
Q ss_pred EEEecCCCCEEEEEE--CCCcEEEE
Q 005352 492 FQFLPQDSSKVMVSC--ADSQVRIL 514 (701)
Q Consensus 492 l~~~p~~~~~l~~~s--~dg~I~iw 514 (701)
++|.+ ++-.|.+.+ ..|.|+-.
T Consensus 185 ~~Fg~-~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSK-DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECT-TSSCEEEEECTTSCEEEEE
T ss_pred EEEcC-CCcEEEEEecCCCCCEEEE
Confidence 99999 677677755 67888664
No 321
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.19 E-value=7.4 Score=46.50 Aligned_cols=110 Identities=12% Similarity=0.123 Sum_probs=74.4
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeee--eecCCCCeEEEEEeeCC-----CCEEEEEEc-CCcEEEEeCCC
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLR--VFPHSNYVTCVHFNPVD-----DNYFISGSI-DGKVRIWAVLS 426 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~--~~~h~~~V~~l~f~p~~-----~~~l~sgs~-dg~v~iwd~~~ 426 (701)
..|...+.+. .+++.++ ++.+.++.+..++... .......|.|+++.|.. ..+++.|.. |++|+|+++.+
T Consensus 514 ~~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 514 KNISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 3566666543 3555554 6788888877654322 23356789999998632 478999996 99999999998
Q ss_pred CcEEEEecCC--CcEEEEEEee--CCCeEEEEecCCcEEEEECC
Q 005352 427 CHVVDWVDIR--QIVTAVCYRP--DGQGGIVGSMMGDCRFYNVS 466 (701)
Q Consensus 427 ~~~~~~~~~~--~~i~~i~~sp--~g~~l~~gs~dg~v~i~d~~ 466 (701)
.+.+...... ..+.++++.. ...+|.+|-.||.+.-+.+.
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 7766544432 3555665543 33578899999998766654
No 322
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.01 E-value=0.35 Score=51.77 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=76.0
Q ss_pred EEecCCCcEEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeee-----eeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 431 DWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELD-----AEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 431 ~~~~~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
..+........+..+|||+++++++. +.++.++|++....... ..-.+.. ...........+|.+ ++....+
T Consensus 317 ~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a-e~e~GlGPlHt~Fd~-~G~aYTt 394 (638)
T 3sbq_A 317 RYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG-EPELGLGPLHTTFDG-RGNAYTT 394 (638)
T ss_dssp EEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE-CCBCCSCEEEEEECS-SSEEEEE
T ss_pred EEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe-eccCCCcccEEEECC-CCceEee
Confidence 44444556677899999999988765 78899999974211000 0000011 111334567788988 5655555
Q ss_pred EECCCcEEEEeCCccceeeeccc---------CCCCeEEEEE------ecCCCEEEEEe---CCCcE----------EEE
Q 005352 505 SCADSQVRILQGPNVIGKYKGLR---------RSGNQLSACF------TSDGKHIVSAG---EDSNV----------YMW 556 (701)
Q Consensus 505 ~s~dg~I~iwd~~~~~~~~~~~~---------~~~~v~~l~~------s~dg~~l~sgs---~Dg~I----------~iW 556 (701)
-.-|.+|.-|++......+.+.. -.-.+-.+.- .++|++|++.. .|..+ .+.
T Consensus 395 lfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~Qli 474 (638)
T 3sbq_A 395 LFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLI 474 (638)
T ss_dssp ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEE
T ss_pred eeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeE
Confidence 55799999999865433332211 1112222222 47889999884 45433 666
Q ss_pred eCCCCC
Q 005352 557 NCIGHE 562 (701)
Q Consensus 557 d~~~~~ 562 (701)
|+...+
T Consensus 475 dIsGdk 480 (638)
T 3sbq_A 475 DISGDE 480 (638)
T ss_dssp ECSSSS
T ss_pred ecCCCc
Confidence 765554
No 323
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=94.92 E-value=5.8 Score=43.90 Aligned_cols=187 Identities=8% Similarity=-0.024 Sum_probs=113.8
Q ss_pred eEEEEECCCcEEEEECCCCeeee-ee--cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-CCcEEEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLR-VF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQIVTAV 442 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~-~~--~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~i~~i 442 (701)
+|+.+. .+.|+..++....... .+ ..-..+..++|.+.++.++++-...+.|+.+++........... -..+..+
T Consensus 319 ~Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~Gl 397 (619)
T 3s94_A 319 LLLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGI 397 (619)
T ss_dssp EEEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred EEEEEc-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCce
Confidence 444433 4567777876653211 12 23356789999984455555555578899999876543333322 2467789
Q ss_pred EEeeCCCeE-EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-CCcEEEEeCCccc
Q 005352 443 CYRPDGQGG-IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPNVI 520 (701)
Q Consensus 443 ~~sp~g~~l-~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-dg~I~iwd~~~~~ 520 (701)
++.+.+..| ++-+..+.|.+.++....... +. ........+|++.|..+.++++-.. ...|...++....
T Consensus 398 AvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~-----l~---~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~ 469 (619)
T 3s94_A 398 AVDWVARNLYWTDTGTDRIEVTRLNGTMRKI-----LI---SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD 469 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEE-----EE---CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred EEecccCcEEEEeCCCCcEEEEeCCCCeEEE-----EE---ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc
Confidence 998755544 444567889999987653211 11 1133567899999955555555433 3677776665322
Q ss_pred eeeecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCC
Q 005352 521 GKYKGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 521 ~~~~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~~ 562 (701)
............+.+++++++..|+.+. ..+.|...+++...
T Consensus 470 ~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 470 RVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred cEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 2221222346778999999777777664 45779889886544
No 324
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.91 E-value=1.6 Score=52.31 Aligned_cols=204 Identities=9% Similarity=0.086 Sum_probs=114.1
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCC-Ceeeeeec-C----CCCeEEEEEeeCCCCEEEEEE-------cCCcEEEE
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFP-H----SNYVTCVHFNPVDDNYFISGS-------IDGKVRIW 422 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~-~~~~~~~~-h----~~~V~~l~f~p~~~~~l~sgs-------~dg~v~iw 422 (701)
+|.-=.|-....|+-.+ +..|..|++.. ..+++.|. | ...|..-..++ +.++++..+ ..|.+.+|
T Consensus 107 ~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLy 184 (1630)
T 1xi4_A 107 DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLY 184 (1630)
T ss_pred CceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeee
Confidence 34444565555333332 45799999964 35555554 2 34566666777 777766544 34789999
Q ss_pred eCCCCcEEEEecCCCcEEEEEEe--eCCCeEEE-Ee---cCCcEEEEECCCC---eeee-eeeEEeecccCCCCCCeeEE
Q 005352 423 AVLSCHVVDWVDIRQIVTAVCYR--PDGQGGIV-GS---MMGDCRFYNVSDN---HLEL-DAEICVHSKKKAPCKRITGF 492 (701)
Q Consensus 423 d~~~~~~~~~~~~~~~i~~i~~s--p~g~~l~~-gs---~dg~v~i~d~~~~---~~~~-~~~~~~~~~~~~~~~~i~~l 492 (701)
....+......+|......+... +....+++ +. ..+.++|.++... .... .....+.........-..++
T Consensus 185 S~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~ 264 (1630)
T 1xi4_A 185 SVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (1630)
T ss_pred ecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEE
Confidence 88766443333333222222111 11111222 11 1268899888543 1111 11111111111223344567
Q ss_pred EEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 493 QFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
..++ ....+...+.-|.|++||+.+....|...-...+|...+-+....=++.....|.|.--.++...
T Consensus 265 ~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 265 QISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred Eecc-ccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 7777 67788889999999999999988888765566666655555443345555577777777766554
No 325
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.85 E-value=4 Score=41.65 Aligned_cols=199 Identities=11% Similarity=0.014 Sum_probs=106.2
Q ss_pred ccCeEEEEEecCCeEEEEECCCcEEEEECCCCe-eeeeec----CCCCeEEEEEeeCC---CCEEEEEEc----C----C
Q 005352 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH-CLRVFP----HSNYVTCVHFNPVD---DNYFISGSI----D----G 417 (701)
Q Consensus 354 ~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~-~~~~~~----h~~~V~~l~f~p~~---~~~l~sgs~----d----g 417 (701)
-.....|+|.|++.|+.+..++.|++++ ..++ .+..+. .......|+++| + +..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcce
Confidence 3456899999999777777889999997 3444 222221 235688999999 5 344444332 2 5
Q ss_pred cEEEEeCCCC-------cEE-EEec--CCCcEEEEEEeeCCCeEEEEec-------------CCcEEEEECCCCeeee--
Q 005352 418 KVRIWAVLSC-------HVV-DWVD--IRQIVTAVCYRPDGQGGIVGSM-------------MGDCRFYNVSDNHLEL-- 472 (701)
Q Consensus 418 ~v~iwd~~~~-------~~~-~~~~--~~~~i~~i~~sp~g~~l~~gs~-------------dg~v~i~d~~~~~~~~-- 472 (701)
.|..|+.... +.+ .... .......++|.|+|.++++.+. .|.|.-++.... ...
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCC
Confidence 6777776654 111 1111 1123567999999976555332 244555554321 000
Q ss_pred ---eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC---cEEEEeCCc---------------c-ceeeecccCCC
Q 005352 473 ---DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS---QVRILQGPN---------------V-IGKYKGLRRSG 530 (701)
Q Consensus 473 ---~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg---~I~iwd~~~---------------~-~~~~~~~~~~~ 530 (701)
...+... .......++|.|.++.++++-...+ .|.+..... . ...+.......
T Consensus 185 pf~~~~i~a~-----G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ 259 (354)
T 3a9g_A 185 PFPNSPIWSY-----GHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW 259 (354)
T ss_dssp SSTTCCEEEE-----CCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred CCCCCcEEEE-----ccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence 0000000 1123568899985555555433322 244433211 0 01111101234
Q ss_pred CeEEEEEe-------cCCCEEEEEeCCCcEEEEeCCC
Q 005352 531 NQLSACFT-------SDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 531 ~v~~l~~s-------~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
....++|. .+|.++++.-..+.|...+++.
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 57778883 5676666666666777777654
No 326
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.70 E-value=1 Score=46.15 Aligned_cols=106 Identities=11% Similarity=0.105 Sum_probs=62.7
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe------cCCCcEEEEEEeeC---CCeEEEEecC------Cc
Q 005352 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV------DIRQIVTAVCYRPD---GQGGIVGSMM------GD 459 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~------~~~~~i~~i~~sp~---g~~l~~gs~d------g~ 459 (701)
.....++|.| +++++++ ..+|.|++++ .++..... ........|+++|+ +..|+++... +.
T Consensus 31 ~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 4578999999 8885554 5679999998 44322211 12356899999998 5666665442 67
Q ss_pred EEEEECCCCeeeeeeeEEeeccc--CCCCCCeeEEEEecCCCCEEEEEE
Q 005352 460 CRFYNVSDNHLELDAEICVHSKK--KAPCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 460 v~i~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~p~~~~~l~~~s 506 (701)
|..|+.....+.....+ +.... .........++|.| ++.++++.+
T Consensus 107 v~r~~~~~~~~~~~~~l-~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVV-LDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEE-EEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred EEEEEeCCCCcCceEEE-EEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 88888775432111111 11111 11223346899999 566555543
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.25 E-value=1.5 Score=46.57 Aligned_cols=165 Identities=16% Similarity=0.117 Sum_probs=90.1
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---------CCCcEEEEEEeeC---CCeEEEEec------
Q 005352 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---------IRQIVTAVCYRPD---GQGGIVGSM------ 456 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---------~~~~i~~i~~sp~---g~~l~~gs~------ 456 (701)
.....|+|.| +++++++-...+.|++++..+++...... ....+..|+|+|+ +..|++...
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999 88877765433478888766554432221 2355779999996 566665543
Q ss_pred -------CCcEEEEECCCCeeee-eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC--------------------
Q 005352 457 -------MGDCRFYNVSDNHLEL-DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-------------------- 508 (701)
Q Consensus 457 -------dg~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-------------------- 508 (701)
...|.-|++......+ ..+..+........+....|.|.| ++.++++.+..
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~ 184 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQ 184 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCCCCH
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCcccccccccccccccc
Confidence 1345556554321111 111111111122234578999999 56666665432
Q ss_pred ------------CcEEEEeCCccc-----------eeeecccCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCC
Q 005352 509 ------------SQVRILQGPNVI-----------GKYKGLRRSGNQLSACFTSDGKHIVSA-GEDSNVYMWNCIGHE 562 (701)
Q Consensus 509 ------------g~I~iwd~~~~~-----------~~~~~~~~~~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~~~ 562 (701)
|.|.-++..... ...-.. .......++|+|+|.+.++- +.++.-.|.-+..+.
T Consensus 185 ~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~-G~RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G~ 261 (454)
T 1cru_A 185 QELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL-GHRNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKGG 261 (454)
T ss_dssp HHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB-CCSEEEEEEECTTSCEEEEEECSSSCEEEEECCTTC
T ss_pred ccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEE-CCCCcceEEECCCCCEEEEecCCCCCeEEEEecCCC
Confidence 334444432210 111111 23457889999988765553 445555666555443
No 328
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.07 E-value=1.2 Score=44.20 Aligned_cols=181 Identities=8% Similarity=0.023 Sum_probs=94.7
Q ss_pred eEEEEEC--CCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcC----CcEEEEeCCCCcEEEEecCCC-
Q 005352 367 YLLSASI--DKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID----GKVRIWAVLSCHVVDWVDIRQ- 437 (701)
Q Consensus 367 ~l~s~s~--dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~d----g~v~iwd~~~~~~~~~~~~~~- 437 (701)
.++.|+. ...+.+||..+.+-...-. ....-.+++. - ++.+++.|+.+ ..+.+||+.+.+-........
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4455554 3578899998876543322 1111112222 2 66777887755 568899998876544332221
Q ss_pred --cEEEEEEeeCCCeEEEEecC------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC--
Q 005352 438 --IVTAVCYRPDGQGGIVGSMM------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-- 507 (701)
Q Consensus 438 --~i~~i~~sp~g~~l~~gs~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-- 507 (701)
....+. -+++.++.|+.+ ..+.+||+.++.......+ ........ ++.. ++.+++.|+.
T Consensus 92 r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~------p~~r~~~~-~~~~--~~~iyv~GG~~~ 160 (306)
T 3ii7_A 92 RDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM------LTQRCSHG-MVEA--NGLIYVCGGSLG 160 (306)
T ss_dssp CBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC------SSCCBSCE-EEEE--TTEEEEECCEES
T ss_pred ccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC------cCCcceeE-EEEE--CCEEEEECCCCC
Confidence 122222 267777777765 4589999998875432111 11111112 2222 4567777664
Q ss_pred -------CCcEEEEeCCccceeee-cccCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCC
Q 005352 508 -------DSQVRILQGPNVIGKYK-GLRRSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGH 561 (701)
Q Consensus 508 -------dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~ 561 (701)
-..+.+||..+..-... .......-.+++. -++++++.|+.+ ..+.+||+.+.
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 34588888764321111 1111111112222 266677776643 35778887664
No 329
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.95 E-value=2 Score=43.59 Aligned_cols=151 Identities=7% Similarity=-0.053 Sum_probs=83.9
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-------cCCCcEEEEEEeeC---CCeEEEEe---cCCcE
Q 005352 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-------DIRQIVTAVCYRPD---GQGGIVGS---MMGDC 460 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-------~~~~~i~~i~~sp~---g~~l~~gs---~dg~v 460 (701)
-.....|+|.| ++.++++--..|.|++++..+++..... ........|+++|+ +..|++.. .++.|
T Consensus 31 L~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 31 LNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 35678999999 8887776655899999987665543221 23456899999995 44555532 34556
Q ss_pred EEEECCCCe----eeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-------------CCcEEEEeCCccc---
Q 005352 461 RFYNVSDNH----LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-------------DSQVRILQGPNVI--- 520 (701)
Q Consensus 461 ~i~d~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-------------dg~I~iwd~~~~~--- 520 (701)
.-|.+.... .....+..+........+....|.|.| ++.++++.+. .+.|.-++.....
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 666665421 100111111111112233456799999 5666666442 3455555543210
Q ss_pred -----eeeecccCCCCeEEEEEecCCCEEEEE
Q 005352 521 -----GKYKGLRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 521 -----~~~~~~~~~~~v~~l~~s~dg~~l~sg 547 (701)
.......+ .....++|+|+|.+.++=
T Consensus 189 nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 189 NPFPGSPVYSYGH-RNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp CSSTTCCEEEBCC-SBCCEEEECTTCCEEEEE
T ss_pred CCCCCCeEEeeCC-CCcceEEECCCCCEEEEe
Confidence 01111112 345678899887755543
No 330
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.85 E-value=6.3 Score=39.94 Aligned_cols=239 Identities=10% Similarity=0.035 Sum_probs=119.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
-...+.|+|.|||.++++--..|.|++++...++......++
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~-------------------------------------- 72 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP-------------------------------------- 72 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT--------------------------------------
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC--------------------------------------
Confidence 445789999999998777765898888875443211000000
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC----CeEEEE---ECCCcEEEEECCCC----------eee-eee
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN----NYLLSA---SIDKTVRLWRVGND----------HCL-RVF 391 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~----~~l~s~---s~dg~I~iWd~~~~----------~~~-~~~ 391 (701)
..+.........|+++|+ +.|+.. ..++.|.-|.+..+ +.+ ..+
T Consensus 73 ------------------~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~ 134 (347)
T 3das_A 73 ------------------GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGI 134 (347)
T ss_dssp ------------------TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEE
T ss_pred ------------------ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcC
Confidence 001123356788899884 533332 23445655655441 111 112
Q ss_pred c--CCCCeEEEEEeeCCCCEEEEEEc-------------CCcEEEEeCCCC---------cEEEEecCCCcEEEEEEeeC
Q 005352 392 P--HSNYVTCVHFNPVDDNYFISGSI-------------DGKVRIWAVLSC---------HVVDWVDIRQIVTAVCYRPD 447 (701)
Q Consensus 392 ~--h~~~V~~l~f~p~~~~~l~sgs~-------------dg~v~iwd~~~~---------~~~~~~~~~~~i~~i~~sp~ 447 (701)
. .......|+|.| ++.++++.+. .|.|.-.+.... ..+...++ .....++|+|+
T Consensus 135 p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~ 212 (347)
T 3das_A 135 PKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDK 212 (347)
T ss_dssp CCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTT
T ss_pred CCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCC
Confidence 2 122356799999 8887777542 244444454322 11222233 24567899998
Q ss_pred CCeEEEEe-cCCcEEEEECCCCeee----eee-----eEEe-ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 448 GQGGIVGS-MMGDCRFYNVSDNHLE----LDA-----EICV-HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 448 g~~l~~gs-~dg~v~i~d~~~~~~~----~~~-----~~~~-~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
|...++=. .++.-.|.-+..+... ... .+.. ......+.....+++|.. +.+++..-..+.|....+
T Consensus 213 G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~~~~l~~v~~ 290 (347)
T 3das_A 213 QRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGLRGERLWRIPL 290 (347)
T ss_dssp CCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEESTTCSEEEEEE
T ss_pred CCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--CceeeccccCCEEEEEEe
Confidence 76554432 2222233322222110 000 0000 000000112456777764 455655555666766655
Q ss_pred Cccce----eeecccCCCCeEEEEEecCCCEEEEEe
Q 005352 517 PNVIG----KYKGLRRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 517 ~~~~~----~~~~~~~~~~v~~l~~s~dg~~l~sgs 548 (701)
..... ..........+..++..|||.++++..
T Consensus 291 ~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 291 KGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp ETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 42211 111112346789999999997666653
No 331
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.83 E-value=1.8 Score=42.80 Aligned_cols=174 Identities=9% Similarity=0.008 Sum_probs=90.2
Q ss_pred CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcC-----CcEEEEeCCCCc---EEEEecCC---CcEEE
Q 005352 375 KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCH---VVDWVDIR---QIVTA 441 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~d-----g~v~iwd~~~~~---~~~~~~~~---~~i~~ 441 (701)
..+.+||+.+.+....-. ....-.+++. . ++.+++.|+.+ ..+.+||+.+.+ -....... .....
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 468889988876443222 1111112222 2 66777777755 468999998876 33322211 11222
Q ss_pred EEEeeCCCeEEEEecC-----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-----CcE
Q 005352 442 VCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----SQV 511 (701)
Q Consensus 442 i~~sp~g~~l~~gs~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-----g~I 511 (701)
+. .+++.++.|+.+ ..+.+||+.++.......+ . ........+.+ ++.+++.|+.+ ..+
T Consensus 109 ~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-----p-~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~ 177 (301)
T 2vpj_A 109 TT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM-----Q-TAREGAGLVVA---SGVIYCLGGYDGLNILNSV 177 (301)
T ss_dssp EE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC-----S-SCCBSCEEEEE---TTEEEEECCBCSSCBCCCE
T ss_pred EE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC-----C-CCcccceEEEE---CCEEEEECCCCCCcccceE
Confidence 22 266777777653 3588999988776432211 1 11111122222 46777777754 458
Q ss_pred EEEeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCC
Q 005352 512 RILQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGHE 562 (701)
Q Consensus 512 ~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~~ 562 (701)
.+||..+..-.... ......-.+++ ..++++++.|+.+ ..+.+||+.+.+
T Consensus 178 ~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 178 EKYDPHTGHWTNVTPMATKRSGAGVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEeCCCCcEEeCCCCCcccccceEE-EECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 88887643221111 11111111122 2356677777654 357888876543
No 332
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=93.82 E-value=1.4 Score=43.56 Aligned_cols=173 Identities=14% Similarity=0.154 Sum_probs=88.9
Q ss_pred CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcC-----CcEEEEeCCCCcEEEEecCCC---cEEEEEE
Q 005352 375 KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVDWVDIRQ---IVTAVCY 444 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~d-----g~v~iwd~~~~~~~~~~~~~~---~i~~i~~ 444 (701)
..+.+||+.+.+-...-. ....-.+++. - ++.+++.|+.+ ..+.+||..+.+-........ ....+.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~- 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV- 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-
Confidence 457888888776433321 1111112222 2 66777777755 358899998876544332221 122222
Q ss_pred eeCCCeEEEEecCC-----cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-------CcEE
Q 005352 445 RPDGQGGIVGSMMG-----DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-------SQVR 512 (701)
Q Consensus 445 sp~g~~l~~gs~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-------g~I~ 512 (701)
.+++.++.|+.++ .+.+||+.++.......+ ....... +++.. ++.+++.|+.+ ..+.
T Consensus 107 -~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~------p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 107 -LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM------NTRRSSV-GVGVV--GGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp -ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC------SSCCBSC-EEEEE--TTEEEEECCEETTTTEECCCEE
T ss_pred -ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC------CCcccCc-eEEEE--CCEEEEEeCCCCCCCccccEEE
Confidence 2677777777653 478899988775432211 1111111 22222 45677776642 3588
Q ss_pred EEeCCccceeee-cccCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCC
Q 005352 513 ILQGPNVIGKYK-GLRRSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGH 561 (701)
Q Consensus 513 iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~ 561 (701)
+||..+..-... .......-.+++ .-++++++.|+.+ ..+.+||+.+.
T Consensus 177 ~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 177 CYNATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred EEeCCCCcEEECCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 888764321111 111111111222 2266777777654 35778887654
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.50 E-value=4.3 Score=40.31 Aligned_cols=181 Identities=9% Similarity=0.070 Sum_probs=93.0
Q ss_pred eEEEEECCCcEEEEECCCCeeee-eecCC-CCeEEEEEeeCCCCEEEEEEc----C-------CcEEEEeCCCCcEEEEe
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLR-VFPHS-NYVTCVHFNPVDDNYFISGSI----D-------GKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~-~~~h~-~~V~~l~f~p~~~~~l~sgs~----d-------g~v~iwd~~~~~~~~~~ 433 (701)
+++.|+ ..+.+||..+++-.. .+... .......... ++.+++.|+. + ..+.+||..+.+-....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344555 578999998887543 11111 1222222233 7788888884 1 12778899887654332
Q ss_pred cCCCcEE--EEEEeeCCCeEEEEecC--------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 434 DIRQIVT--AVCYRPDGQGGIVGSMM--------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 434 ~~~~~i~--~i~~sp~g~~l~~gs~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
....+-. +++. -+++.++.|+.+ ..+.+||+.+++...... ......... ++.. ++.+++
T Consensus 84 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~------~p~~r~~~~-~~~~--~~~iyv 153 (315)
T 4asc_A 84 PLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP------LPYVVYGHT-VLSH--MDLVYV 153 (315)
T ss_dssp CBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC------CSSCCBSCE-EEEE--TTEEEE
T ss_pred CCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC------CCCccccee-EEEE--CCEEEE
Confidence 2222211 1222 256666777642 458999998876543221 111111112 2222 467777
Q ss_pred EEEC------CCcEEEEeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEeCCCC
Q 005352 504 VSCA------DSQVRILQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGEDS-----NVYMWNCIGH 561 (701)
Q Consensus 504 ~~s~------dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg-----~I~iWd~~~~ 561 (701)
.|+. -..+.+||..+..-.... ......-.+++ .-++++++.|+.++ .+.+||+.+.
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCC
Confidence 7776 246888987643211111 11111111222 23667777777654 4777777654
No 334
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=93.49 E-value=11 Score=41.65 Aligned_cols=200 Identities=6% Similarity=-0.082 Sum_probs=121.0
Q ss_pred cCeEEEEEecCC-eEE-EEECCCcEEEEECCCCeeeeeec-------CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC
Q 005352 355 GEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFP-------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~-s~s~dg~I~iWd~~~~~~~~~~~-------h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~ 425 (701)
..+..|+|.+.+ .|+ +=...+.|+.+++........+. .-..+..+++....++++++-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 457789998865 444 44456788888876544333332 134688999998445566677778889999987
Q ss_pred CCcEEEEe-cCCCcEEEEEEeeCCCeEEEEe-cCC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCE
Q 005352 426 SCHVVDWV-DIRQIVTAVCYRPDGQGGIVGS-MMG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (701)
Q Consensus 426 ~~~~~~~~-~~~~~i~~i~~sp~g~~l~~gs-~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~ 501 (701)
......+. ..-.....|++.|...+|+... ... .|...++........ . .......++|++.+..+.+
T Consensus 420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l----~----~~~l~~P~gla~D~~~~~L 491 (628)
T 4a0p_A 420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVL----F----FSGLSKPIALALDSRLGKL 491 (628)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEE----E----CSSCSCEEEEEEETTTTEE
T ss_pred CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEE----E----eccCCCccEEEEeCCCCEE
Confidence 54332332 2346789999999444444433 332 566666664432211 1 1123457899999854455
Q ss_pred EEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 502 VMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 502 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+.+-+..+.|..+++..................+++.. +..+++=.....|...|..+++.
T Consensus 492 Yw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~ 552 (628)
T 4a0p_A 492 FWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREG 552 (628)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSC
T ss_pred EEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCC
Confidence 55555578899998753322221112334567787755 44444545667788888776663
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.15 E-value=0.16 Score=51.59 Aligned_cols=110 Identities=10% Similarity=0.027 Sum_probs=70.6
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCC--CCeEEEEEee-CCCCEEEEE--EcCCcEEEEeCCCCcEEEEecC----
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHS--NYVTCVHFNP-VDDNYFISG--SIDGKVRIWAVLSCHVVDWVDI---- 435 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~--~~V~~l~f~p-~~~~~l~sg--s~dg~v~iwd~~~~~~~~~~~~---- 435 (701)
++.++.++.||.|.-.|..+|+.+..+... .++....-.. ..+..++.+ +.||.|..++..++........
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 458899999999999999999999998744 2332211000 012234433 5799999999988754422211
Q ss_pred -CCcEEE---EEE-e----eCCCeEEEEecCCcEEEEECCCCeeeeee
Q 005352 436 -RQIVTA---VCY-R----PDGQGGIVGSMMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 436 -~~~i~~---i~~-s----p~g~~l~~gs~dg~v~i~d~~~~~~~~~~ 474 (701)
..++.. ..+ . ..+..+++|+.+|.+...|+.+++.....
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 112211 000 0 14568899999999999999999877544
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.67 E-value=0.19 Score=47.14 Aligned_cols=101 Identities=10% Similarity=0.066 Sum_probs=64.6
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCC--------eEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNY--------VTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~--------V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
..+.+++|+|++.|.+. .+|.+.-.+..+.....-+..... ..++.|.| ++.+.++ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence 36779999998866666 777766666544222111111112 47889998 8887777 579988887644
Q ss_pred CcEEEEe------c--CCCcEEEEEEeeCCCeEEEEecCCcEE
Q 005352 427 CHVVDWV------D--IRQIVTAVCYRPDGQGGIVGSMMGDCR 461 (701)
Q Consensus 427 ~~~~~~~------~--~~~~i~~i~~sp~g~~l~~gs~dg~v~ 461 (701)
.....+. . .=..+..|.+.|+|...++. ++.++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 3222221 1 11457999999999877777 77754
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.66 E-value=1.8 Score=44.12 Aligned_cols=175 Identities=7% Similarity=0.012 Sum_probs=86.0
Q ss_pred CcEEEEECCCCeeeeeecCC---CCeEEEEEeeCCCCEEEEEEcC-----------------------------------
Q 005352 375 KTVRLWRVGNDHCLRVFPHS---NYVTCVHFNPVDDNYFISGSID----------------------------------- 416 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~h~---~~V~~l~f~p~~~~~l~sgs~d----------------------------------- 416 (701)
..+.+||+.+.+-...-... ..-.+++. . ++.+++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence 46889999887644332211 11112222 3 77888888754
Q ss_pred ----CcEEEEeCCCCcEEEEecCCC--cE-EEEEEeeCCCeEEEEec------CCcEEEEEC--CCCeeeeeeeEEeecc
Q 005352 417 ----GKVRIWAVLSCHVVDWVDIRQ--IV-TAVCYRPDGQGGIVGSM------MGDCRFYNV--SDNHLELDAEICVHSK 481 (701)
Q Consensus 417 ----g~v~iwd~~~~~~~~~~~~~~--~i-~~i~~sp~g~~l~~gs~------dg~v~i~d~--~~~~~~~~~~~~~~~~ 481 (701)
..+.+||+.+.+-........ .- .+++. -+++.++.|+. ...+..||+ .+........
T Consensus 164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~------ 236 (357)
T 2uvk_A 164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAP------ 236 (357)
T ss_dssp GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCC------
T ss_pred cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCC------
Confidence 478999998876443332221 11 22222 25666677654 345777887 4444332111
Q ss_pred cCCCCCCee-EEEEecCCCCEEEEEECC----------------------CcEEEEeCCccc--eeeecccCCCCeEEEE
Q 005352 482 KKAPCKRIT-GFQFLPQDSSKVMVSCAD----------------------SQVRILQGPNVI--GKYKGLRRSGNQLSAC 536 (701)
Q Consensus 482 ~~~~~~~i~-~l~~~p~~~~~l~~~s~d----------------------g~I~iwd~~~~~--~~~~~~~~~~~v~~l~ 536 (701)
......... .+... ++.+++.|+.+ ..+.+||..+.. ..-........ ..+
T Consensus 237 ~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~ 312 (357)
T 2uvk_A 237 VSSPDGVAGGFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVS 312 (357)
T ss_dssp SSTTTCCBSCEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEE
T ss_pred CCCCcccccceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--cee
Confidence 111111111 12222 46777777642 257788876422 11111111111 222
Q ss_pred EecCCCEEEEEeCCC------cEEEEeCCCCC
Q 005352 537 FTSDGKHIVSAGEDS------NVYMWNCIGHE 562 (701)
Q Consensus 537 ~s~dg~~l~sgs~Dg------~I~iWd~~~~~ 562 (701)
...++++++.|+.++ .|.++++++++
T Consensus 313 ~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 313 LPWNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EEETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 334777888888553 35666877765
No 338
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.65 E-value=2.6 Score=43.07 Aligned_cols=147 Identities=10% Similarity=0.043 Sum_probs=78.5
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-E-------ecCCCcEEEEEEeeC---CCeEEEEec-------
Q 005352 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-W-------VDIRQIVTAVCYRPD---GQGGIVGSM------- 456 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~-------~~~~~~i~~i~~sp~---g~~l~~gs~------- 456 (701)
.....|+|.| +++.|+.+...|.|++++.. +.... + .........|+++|+ +..|++...
T Consensus 18 ~~P~~i~~~p-dG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLP-DNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECS-TTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcC-CCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3568999999 88834445568999999853 33211 1 112345789999996 555555532
Q ss_pred -CCcEEEEECCCCeeeee-eeEEeeccc--CCCCCCeeEEEEecCCCCEEEEEEC-------------CCcEEEEeCCcc
Q 005352 457 -MGDCRFYNVSDNHLELD-AEICVHSKK--KAPCKRITGFQFLPQDSSKVMVSCA-------------DSQVRILQGPNV 519 (701)
Q Consensus 457 -dg~v~i~d~~~~~~~~~-~~~~~~~~~--~~~~~~i~~l~~~p~~~~~l~~~s~-------------dg~I~iwd~~~~ 519 (701)
...|..|++......+. .+..+.... .........+.|.| ++.++++.+. .+.|.-++....
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 23566666654321111 111111111 11122346799999 5655555433 245666665422
Q ss_pred --------------ceeeecccCCCCeEEEEEec-CCCEEEE
Q 005352 520 --------------IGKYKGLRRSGNQLSACFTS-DGKHIVS 546 (701)
Q Consensus 520 --------------~~~~~~~~~~~~v~~l~~s~-dg~~l~s 546 (701)
...+. . .......++|+| +|+++++
T Consensus 175 ~p~~npf~~~~~~~~~i~a-~-G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWS-Y-GIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEE-E-CCSEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCcCCCCCCccEEE-E-cCcCccceEEECCCCCEEEE
Confidence 11111 1 224578899999 5554443
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.83 E-value=3.2 Score=49.76 Aligned_cols=190 Identities=8% Similarity=0.103 Sum_probs=115.2
Q ss_pred EecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC-cEEEEecC-----
Q 005352 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWVDI----- 435 (701)
Q Consensus 362 ~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~----- 435 (701)
.+|...+++--...++.|+|+.+...++.+..+.+|.--.|- +.+.|+..+ +..|..|++... .++..+..
T Consensus 73 MnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~ 149 (1630)
T 1xi4_A 73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA 149 (1630)
T ss_pred cCCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEec--CCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcc
Confidence 355553333334789999999999999999888888887886 456666655 567999999642 22222221
Q ss_pred CCcEEEEEEeeCCCeEEEEe-------cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe--cCCCCEEEEEE
Q 005352 436 RQIVTAVCYRPDGQGGIVGS-------MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL--PQDSSKVMVSC 506 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs-------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--p~~~~~l~~~s 506 (701)
...|..-..+++.++++..+ ..|.+.+|..+.+..+. ..+|......+... +....++..+.
T Consensus 150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~---------iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---------IEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh---------hhHhHhhhheeccCCCCCCceEEEEEE
Confidence 34577777788888887643 35778888887653221 11111111111111 10111222111
Q ss_pred C---CCcEEEEeCCcc---ceeee---------cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 507 A---DSQVRILQGPNV---IGKYK---------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 507 ~---dg~I~iwd~~~~---~~~~~---------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
. .++++|.++... ...|. ......-..++..++....+..-+.-|.|++||+.++..
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 1 368888887532 11111 111234456778888888888889999999999999874
No 340
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=90.58 E-value=4.6 Score=40.01 Aligned_cols=172 Identities=10% Similarity=0.014 Sum_probs=88.9
Q ss_pred CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEc----C-----CcEEEEeCCCCcEEEEecCC---CcEE
Q 005352 375 KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSI----D-----GKVRIWAVLSCHVVDWVDIR---QIVT 440 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~----d-----g~v~iwd~~~~~~~~~~~~~---~~i~ 440 (701)
..+.+||..+.+....-. ....-.+++.. ++.+++.|+. + ..+.+||+.+.+-....... ....
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 458888888776443321 11111122222 5667777765 2 46889999887644332211 1222
Q ss_pred EEEEeeCCCeEEEEecC-----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-----Cc
Q 005352 441 AVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----SQ 510 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-----g~ 510 (701)
.+.+ +++.++.|+.+ ..+.+||+.++.......+ .........+.+ ++.+++.|+.+ ..
T Consensus 117 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~------p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~ 185 (308)
T 1zgk_A 117 VGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM------LTRRIGVGVAVL---NRLLYAVGGFDGTNRLNS 185 (308)
T ss_dssp EEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC------SSCCBSCEEEEE---TTEEEEECCBCSSCBCCC
T ss_pred EEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC------CccccceEEEEE---CCEEEEEeCCCCCCcCce
Confidence 2222 66777777643 4588999988775432211 111111122222 46777777654 45
Q ss_pred EEEEeCCccceeee--cccCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCC
Q 005352 511 VRILQGPNVIGKYK--GLRRSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGH 561 (701)
Q Consensus 511 I~iwd~~~~~~~~~--~~~~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~ 561 (701)
+.+||..+..-... ..........+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 186 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 186 AECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 88888764321111 1111111122222 66677777654 45788887654
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=90.53 E-value=7.5 Score=38.55 Aligned_cols=174 Identities=8% Similarity=0.046 Sum_probs=87.3
Q ss_pred cEEEEECCCCeeeee-ecC-CCCeEEEEEeeCCCCEEEEEEc----CC-------cEEEEeCCCCcEEEEecCCC---cE
Q 005352 376 TVRLWRVGNDHCLRV-FPH-SNYVTCVHFNPVDDNYFISGSI----DG-------KVRIWAVLSCHVVDWVDIRQ---IV 439 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~-~~h-~~~V~~l~f~p~~~~~l~sgs~----dg-------~v~iwd~~~~~~~~~~~~~~---~i 439 (701)
.+..||..+++.... ... ........... ++.+++.|+. ++ .+.+||..+.+-........ ..
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 378899988875442 111 11112222233 6778888873 12 17788988776543322211 12
Q ss_pred EEEEEeeCCCeEEEEecC-------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-----
Q 005352 440 TAVCYRPDGQGGIVGSMM-------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA----- 507 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~d-------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~----- 507 (701)
..+. -+++.++.|+.+ ..+.+||+.+++......+ .. ..... +++. . ++.+++.|+.
T Consensus 104 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~----~r~~~-~~~~-~-~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 104 GLGE--VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL--PI----KVYGH-NVIS-H-NGMIYCLGGKTDDKK 172 (318)
T ss_dssp EEEE--ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC--SS----CEESC-EEEE-E-TTEEEEECCEESSSC
T ss_pred ceEE--ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC--CC----ccccc-EEEE-E-CCEEEEEcCCCCCCC
Confidence 2222 266777777754 3488899988775432211 00 00111 1222 2 5677777764
Q ss_pred -CCcEEEEeCCccceeee-cccCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCC
Q 005352 508 -DSQVRILQGPNVIGKYK-GLRRSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGHE 562 (701)
Q Consensus 508 -dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~~ 562 (701)
-..+.+||..+..-... .......-.+++. -++++++.|+.+ ..+.+||+.+.+
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 24588899864321111 1111111112222 366777777643 246778876653
No 342
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=90.49 E-value=17 Score=37.24 Aligned_cols=158 Identities=7% Similarity=-0.102 Sum_probs=78.3
Q ss_pred cCeEEEEEec--CCeEEEEECCC----cEEEEECCCCeeeeeec---------------CCCCeEEEEEeeCC-CCEEEE
Q 005352 355 GEILDLSWSK--NNYLLSASIDK----TVRLWRVGNDHCLRVFP---------------HSNYVTCVHFNPVD-DNYFIS 412 (701)
Q Consensus 355 ~~I~~l~~s~--~~~l~s~s~dg----~I~iWd~~~~~~~~~~~---------------h~~~V~~l~f~p~~-~~~l~s 412 (701)
..|.+|++.| .+.|..++..+ .|...+ ..++.-..+. ....|.++++.|.+ ...+.+
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4688999988 44555555554 343332 2222211111 01247789998744 556666
Q ss_pred EEcCCcEEEEeCCCCcEEEEec-------------------CCCcEEEEEEeeC-CCeEEEEecCCcEEEEECCCCeeee
Q 005352 413 GSIDGKVRIWAVLSCHVVDWVD-------------------IRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLEL 472 (701)
Q Consensus 413 gs~dg~v~iwd~~~~~~~~~~~-------------------~~~~i~~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~~ 472 (701)
+...+.|...+-....-..... ....+.+|.++|. ...++++...+.|...+-.......
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~ 213 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKP 213 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEE
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceE
Confidence 6666655554322222111110 1235788999883 4566777655544443322222111
Q ss_pred eeeEEeeccc-C----CCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 473 DAEICVHSKK-K----APCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 473 ~~~~~~~~~~-~----~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
... ...... . .....+..+.+.|.++..|+++...+ |...+
T Consensus 214 ~~~-~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 214 LNR-GCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp CCT-TCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred CCC-CccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 000 000000 0 00135888999986667788777655 44433
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.71 E-value=8.9 Score=43.11 Aligned_cols=147 Identities=13% Similarity=0.112 Sum_probs=80.7
Q ss_pred CC-eEEEEECC------CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCC--cEEEEeCCCCcEEEEe
Q 005352 365 NN-YLLSASID------KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG--KVRIWAVLSCHVVDWV 433 (701)
Q Consensus 365 ~~-~l~s~s~d------g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg--~v~iwd~~~~~~~~~~ 433 (701)
++ .++.|+.+ ..+.+||..+.+-...-. ....-.+++... ++.+++.|+.++ .+.+||+.+.+-....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 45 55566543 357889988865443322 222222233323 678888888655 6999999887644332
Q ss_pred c------CCCcEEEEEEeeC-CCeEEEEec--C-----CcEEEEECCCCee------eeeeeEEeecccCCCCCCeeEEE
Q 005352 434 D------IRQIVTAVCYRPD-GQGGIVGSM--M-----GDCRFYNVSDNHL------ELDAEICVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 434 ~------~~~~i~~i~~sp~-g~~l~~gs~--d-----g~v~i~d~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~ 493 (701)
. ......++.+..+ ++.++.|+. + ..+..||+.++.. ..... ...........+.
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~-----~p~~~R~~~~~~~ 604 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ-----HPLFQRYGSQIKY 604 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE-----CGGGCCBSCEEEE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC-----CCCCCcccceEEE
Confidence 1 1222334555555 667777765 2 4588999988772 11111 0001111122222
Q ss_pred EecCCCCEEEEEEC--------CCcEEEEeCCcc
Q 005352 494 FLPQDSSKVMVSCA--------DSQVRILQGPNV 519 (701)
Q Consensus 494 ~~p~~~~~l~~~s~--------dg~I~iwd~~~~ 519 (701)
+ . ++.+++.|+. ...|.+||..+.
T Consensus 605 ~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 605 I-T-PRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp E-E-TTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred e-C-CCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 2 2 2677777774 346889998743
No 344
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=88.91 E-value=35 Score=38.52 Aligned_cols=183 Identities=7% Similarity=0.058 Sum_probs=106.6
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
.|.++.. .++.|..++.+ -|..+|..+++...... ....|.++.... ++.+.+ |+.+ -|..++..+++..
T Consensus 104 ~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~ 178 (758)
T 3ott_A 104 DVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKFE 178 (758)
T ss_dssp CEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEE
T ss_pred eEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCceE
Confidence 4566544 45666666666 58888987765433211 245688888765 555544 5544 5788888776654
Q ss_pred EEecC------CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 431 DWVDI------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 431 ~~~~~------~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
..... ...|.++...+++..|.+|+. +-+..|+..+.+......+ . ...|.++...+ ...|.+
T Consensus 179 ~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l--~------~~~i~~i~~d~--~g~lWi 247 (758)
T 3ott_A 179 GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAF--H------NNSIKSLALDG--NGDLLA 247 (758)
T ss_dssp EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEE--E------EEEEEEEEECT--TCCEEE
T ss_pred EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCC--C------CCeEEEEEEcC--CCCEEE
Confidence 32211 124888888877777777775 4588899877654321111 1 13466666554 345555
Q ss_pred EECCCcEEEEeCCccce-eeecc------cCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 505 SCADSQVRILQGPNVIG-KYKGL------RRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 505 ~s~dg~I~iwd~~~~~~-~~~~~------~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
|+. +-+.+++..+... .+... -....|.++....+|.+.+ |+..| +.++.
T Consensus 248 gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~ 304 (758)
T 3ott_A 248 GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSR 304 (758)
T ss_dssp EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEEC
T ss_pred EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccc
Confidence 664 4678888754321 12110 1234688888888887554 44456 55543
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=88.91 E-value=6.6 Score=44.19 Aligned_cols=191 Identities=12% Similarity=0.133 Sum_probs=99.0
Q ss_pred eEEEEECC----CcEEEEECCCCeeeeee-c-------CC-CCeEEEEEeeCCCCEEEEEEcC------CcEEEEeCCCC
Q 005352 367 YLLSASID----KTVRLWRVGNDHCLRVF-P-------HS-NYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSC 427 (701)
Q Consensus 367 ~l~s~s~d----g~I~iWd~~~~~~~~~~-~-------h~-~~V~~l~f~p~~~~~l~sgs~d------g~v~iwd~~~~ 427 (701)
.++.|+.+ ..+.+||..+++....- . .. .....+.+.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 56666643 46888998877544333 1 11 1122333321 45677777654 34788999886
Q ss_pred cEEEEecCCC--cEEEEEEeeCCCeEEEEecCC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 428 HVVDWVDIRQ--IVTAVCYRPDGQGGIVGSMMG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 428 ~~~~~~~~~~--~i~~i~~sp~g~~l~~gs~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
+-........ .-.+++...+++.++.|+.++ .+.+||+.++....... .............+.+....+.+++
T Consensus 479 ~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~---~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP---KDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC---SSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC---CCCCCCcccceeEEEEeCCCCEEEE
Confidence 5443322211 112233324788888887655 69999999887543211 0001111122233555543366777
Q ss_pred EEEC--C-----CcEEEEeCCccc-------eeeec--ccCCCCeEEEEEecCCCEEEEEeCC--------CcEEEEeCC
Q 005352 504 VSCA--D-----SQVRILQGPNVI-------GKYKG--LRRSGNQLSACFTSDGKHIVSAGED--------SNVYMWNCI 559 (701)
Q Consensus 504 ~~s~--d-----g~I~iwd~~~~~-------~~~~~--~~~~~~v~~l~~s~dg~~l~sgs~D--------g~I~iWd~~ 559 (701)
.|+. + +.+.+||..+.. ..... ....... +++...++++++.|+.+ ..|.+||+.
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7776 2 458888876543 11111 0111111 22333336667777642 347777766
Q ss_pred CCC
Q 005352 560 GHE 562 (701)
Q Consensus 560 ~~~ 562 (701)
+..
T Consensus 635 t~~ 637 (695)
T 2zwa_A 635 SET 637 (695)
T ss_dssp TTE
T ss_pred CCe
Confidence 543
No 346
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=86.19 E-value=0.46 Score=30.72 Aligned_cols=20 Identities=50% Similarity=0.619 Sum_probs=16.3
Q ss_pred CCCCCcccccccccccccCC
Q 005352 4 SSEDEECPFFDASEDIASIS 23 (701)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (701)
|+|+||-.||||.+-|....
T Consensus 13 SdEDed~EfFDA~efITv~~ 32 (47)
T 2rr3_B 13 SDEDDENEFFDAPEIITMPE 32 (47)
T ss_dssp CCCCCSSCCBCCCSSCSSCS
T ss_pred cccccccccccccceeEccC
Confidence 67888899999999777654
No 347
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=86.11 E-value=14 Score=37.17 Aligned_cols=89 Identities=13% Similarity=0.169 Sum_probs=46.8
Q ss_pred CC-eEEEEEC-CCcEEEEECCC--Ceeee--eec-CCCCeEEEEEeeCCCCEEEEEEc-C---------CcEEEEeCCCC
Q 005352 365 NN-YLLSASI-DKTVRLWRVGN--DHCLR--VFP-HSNYVTCVHFNPVDDNYFISGSI-D---------GKVRIWAVLSC 427 (701)
Q Consensus 365 ~~-~l~s~s~-dg~I~iWd~~~--~~~~~--~~~-h~~~V~~l~f~p~~~~~l~sgs~-d---------g~v~iwd~~~~ 427 (701)
++ .++.|+. ...+.++|+.+ .+... .+. ....-.+++.. ++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 45 4455543 45688899864 32222 222 11111222222 6677777765 2 46889999887
Q ss_pred cEEEEecCC----CcEEEEEEeeCCCeEEEEecC
Q 005352 428 HVVDWVDIR----QIVTAVCYRPDGQGGIVGSMM 457 (701)
Q Consensus 428 ~~~~~~~~~----~~i~~i~~sp~g~~l~~gs~d 457 (701)
+-....... ....++. .+++.++.|+.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 644332221 1122222 577788888754
No 348
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=84.42 E-value=35 Score=34.05 Aligned_cols=148 Identities=11% Similarity=0.089 Sum_probs=88.6
Q ss_pred eEEEEECCCcEEEEECCCCe-------eeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC--CCcE-------E
Q 005352 367 YLLSASIDKTVRLWRVGNDH-------CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL--SCHV-------V 430 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~-------~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~--~~~~-------~ 430 (701)
+++..+.+|.|+--.+.... ....+...+.+..+.... ....++..+..|.+..+... .-.. +
T Consensus 111 ~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv 189 (327)
T 3uc1_A 111 YLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATSGV 189 (327)
T ss_dssp EEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE
T ss_pred EEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCCCe
Confidence 99999999999998765422 222233456666666655 56678888889998888766 2111 1
Q ss_pred E--EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee--eeEEeecccCCCCCCeeEEEEecCCCCEEEEEE
Q 005352 431 D--WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD--AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 431 ~--~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s 506 (701)
. .+.....|.++...+++..+++.+..|.++.-.+..-..... .-..... .......+..+.... +...++..+
T Consensus 190 ~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~-l~~~~d~lv~~~~~~-~~~~i~l~T 267 (327)
T 3uc1_A 190 QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVM-YDRRRGRLVGALIVD-DDSELYAVT 267 (327)
T ss_dssp ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSC-CCTTTCSEEEEEEEC-TTCEEEEEE
T ss_pred eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEE-ecCCCCeEEEEEEeC-CCccEEEEc
Confidence 1 122345677776666777899999999998887654322110 0011111 111123355544444 455677777
Q ss_pred CCCcEEEEeCC
Q 005352 507 ADSQVRILQGP 517 (701)
Q Consensus 507 ~dg~I~iwd~~ 517 (701)
.+|.+.-++..
T Consensus 268 ~~G~~ir~~~~ 278 (327)
T 3uc1_A 268 SGGGVIRTAAR 278 (327)
T ss_dssp GGGCEEEEEGG
T ss_pred CCCeEEEEehh
Confidence 77777777654
No 349
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=83.70 E-value=33 Score=33.25 Aligned_cols=204 Identities=8% Similarity=0.036 Sum_probs=114.3
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEE---EECCCCeeeeeecCCCCeEEEEEeeC-CCCEEEEEEcCCcEEEEeCCCCc-
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRL---WRVGNDHCLRVFPHSNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCH- 428 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~i---Wd~~~~~~~~~~~h~~~V~~l~f~p~-~~~~l~sgs~dg~v~iwd~~~~~- 428 (701)
+.+..+.-.... +|+.-+..|.++- |++........+.....|..+.. +. ++.+++..+.+|.++...+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 345444443333 6666677776654 33322211111444566766644 31 46789999999999998764421
Q ss_pred -----EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 429 -----VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 429 -----~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
....+...+.+..+........++..+..|.+..+....-...-....-...........|..+...+ +...++
T Consensus 103 ~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~-~~~~ll 181 (276)
T 3no0_A 103 KAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN-GEPYLL 181 (276)
T ss_dssp CSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES-SCSEEE
T ss_pred hcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC-CCCEEE
Confidence 11112233456666666566789999999998888764321100000000011112235566666555 466888
Q ss_pred EEECCCcEEEEeCCccceeee------cccCCCCeEEEEEecCCCEEEEEeCCCcEEE--EeCCC
Q 005352 504 VSCADSQVRILQGPNVIGKYK------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYM--WNCIG 560 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~~~~------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i--Wd~~~ 560 (701)
..+..|.++...+......-. .....+.+..+........++..+.+|.+.. ++...
T Consensus 182 ~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 182 VITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 999999999887643221111 1123345555544444456777788888888 87654
No 350
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=82.39 E-value=40 Score=33.17 Aligned_cols=161 Identities=9% Similarity=-0.039 Sum_probs=88.0
Q ss_pred CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE----cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCe
Q 005352 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS----IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs----~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~ 450 (701)
..|+..++...+....... . +..|++ +++.|+-.. .+..|..-++.......+..+.. ..++|+++.
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~--~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPD--P--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp EEEEEEETTSCCCEEEECS--C--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTE
T ss_pred CeEEEEeCCCCcceEeecC--C--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCE
Confidence 4577777776654333222 2 236777 777777665 23456666776554444444432 456888888
Q ss_pred EEEEec-CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC--CcEEEEeCCccceeeeccc
Q 005352 451 GIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD--SQVRILQGPNVIGKYKGLR 527 (701)
Q Consensus 451 l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d--g~I~iwd~~~~~~~~~~~~ 527 (701)
|+-.+. ...|...++........ .. ... ...+.| ++..|+-.... ..|..-++.......-
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~~~l-----~~------~~~-~~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~~~~L--- 222 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSEALF-----YD------CNC-YKPVVL-DDTNVYYMDVNRDNAIVHVNINNPNPVVL--- 222 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEEEEE-----EC------SCE-EEEEEE-ETTEEEEEEGGGTTEEEEECSSSCCCEEC---
T ss_pred EEEEeCCCceEEEEECCCCCEEEE-----eC------CCc-cceeee-cCCEEEEEEcCCCcEEEEEECCCCCeEEE---
Confidence 886665 67788888877653321 11 111 123557 45555554433 3565655543222111
Q ss_pred CCCCeEEEEEecCCCEEEEEeC--CCcEEEEeCCCCC
Q 005352 528 RSGNQLSACFTSDGKHIVSAGE--DSNVYMWNCIGHE 562 (701)
Q Consensus 528 ~~~~v~~l~~s~dg~~l~sgs~--Dg~I~iWd~~~~~ 562 (701)
....+ ..|+|++++|+-++. .+.|..-+++...
T Consensus 223 t~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 223 TEANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp SCSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred eCCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 12233 348889998886632 3566666666543
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=77.52 E-value=65 Score=32.72 Aligned_cols=189 Identities=9% Similarity=-0.021 Sum_probs=92.2
Q ss_pred CCeEEEEECCCcEEEEECCC-Ceeeee---ecCCCCeEEEEEeeCCCCEEEEEEcCC----cEEEEeCCCCcEEEEec--
Q 005352 365 NNYLLSASIDKTVRLWRVGN-DHCLRV---FPHSNYVTCVHFNPVDDNYFISGSIDG----KVRIWAVLSCHVVDWVD-- 434 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~-~~~~~~---~~h~~~V~~l~f~p~~~~~l~sgs~dg----~v~iwd~~~~~~~~~~~-- 434 (701)
.+.|+.++..| +.+++... +..... ......|.+|++.|.+...|.++...| .|...+ ..++.-....
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 34777777777 44444322 222211 223467999999985556666666555 444332 2222111111
Q ss_pred -------------CCCcEEEEEEeeC--CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc----------cCCCCCCe
Q 005352 435 -------------IRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----------KKAPCKRI 489 (701)
Q Consensus 435 -------------~~~~i~~i~~sp~--g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~----------~~~~~~~i 489 (701)
....|.++++.|. ...+++++..+.|...+-................ .......+
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 1124778899872 5667777766655554332222211100000000 01123457
Q ss_pred eEEEEecCCCCEEEEEECCCcEEEEeC-C-ccceeeecccC----------CCCeEEEEEecC-CCEEEEEeCCCcEEEE
Q 005352 490 TGFQFLPQDSSKVMVSCADSQVRILQG-P-NVIGKYKGLRR----------SGNQLSACFTSD-GKHIVSAGEDSNVYMW 556 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~dg~I~iwd~-~-~~~~~~~~~~~----------~~~v~~l~~s~d-g~~l~sgs~Dg~I~iW 556 (701)
..|.+.|.+...++++..++.|...+- . +.......... ...+.++.++|. ...|..+...+ |+..
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 889998855566666655554544432 1 11111110000 134888999986 35666666544 4444
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=77.17 E-value=55 Score=31.71 Aligned_cols=183 Identities=12% Similarity=-0.027 Sum_probs=96.1
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCCCeeeee-ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC-cEEEEe
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWV 433 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~-~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~ 433 (701)
.|..|+......++. . ||.|..|-....-.+.. ......|..++... ...+.-. +|.|+.|-.... ++-...
T Consensus 64 ~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 456666544443333 4 88888886554322211 11234677777653 3444445 999999976542 221111
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
.....|..|+.... ..++-. +|.|..|-.......- . .......|..++.-. .+.++- .++.|+.
T Consensus 138 ~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg-----~---p~~~~~~v~~i~~G~---~hs~al-~~G~v~~ 202 (282)
T 3qhy_B 138 EAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTT-----V---PAEAQSGVDDVAGGI---FHSLAL-KDGKVIA 202 (282)
T ss_dssp GGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTS-----C---CGGGGSSEEEEEECS---SEEEEE-ETTEEEE
T ss_pred cCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCC-----C---ceecCCCeEEEEecC---CEEEEE-ECCeEEE
Confidence 22345666655433 222333 7999998776432210 0 011124566666543 333334 6999999
Q ss_pred EeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 514 LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|-....-+.-........|..++.......+++ ||.|+.|-.+...
T Consensus 203 wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~g 248 (282)
T 3qhy_B 203 WGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGKVIAWGSSRTA 248 (282)
T ss_dssp EECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTEEEEESTTCCC
T ss_pred EECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCEEEEecCCCCc
Confidence 975432211111112245666665544333333 9999999766543
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=76.84 E-value=69 Score=32.64 Aligned_cols=170 Identities=7% Similarity=0.066 Sum_probs=95.1
Q ss_pred cEEEEECCCC--eeeeeec-------CCCCeEEEEEeeCC------CCEEEEEE-cCCcEEEEeCCCCcEEEEec-----
Q 005352 376 TVRLWRVGND--HCLRVFP-------HSNYVTCVHFNPVD------DNYFISGS-IDGKVRIWAVLSCHVVDWVD----- 434 (701)
Q Consensus 376 ~I~iWd~~~~--~~~~~~~-------h~~~V~~l~f~p~~------~~~l~sgs-~dg~v~iwd~~~~~~~~~~~----- 434 (701)
.|.+||+.+. +.++.+. ....+..+.+...+ +.++..+. ..+.|.|+|+.+++......
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5889999999 8888775 24568888888211 23333333 46779999999887654431
Q ss_pred --------------CCCcEEEEEEeeC----CCeEEEEecCCcEEEEECCCCeee---eeeeEEeecccCCCCCCeeEEE
Q 005352 435 --------------IRQIVTAVCYRPD----GQGGIVGSMMGDCRFYNVSDNHLE---LDAEICVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 435 --------------~~~~i~~i~~sp~----g~~l~~gs~dg~v~i~d~~~~~~~---~~~~~~~~~~~~~~~~~i~~l~ 493 (701)
....+..|+++|+ ++.|+-....+ -++|.+.+..+. ....+.....+ .....-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~k-g~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNR-GKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEEC-CTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeec-CCCCCcceEE
Confidence 0235778888887 66666665543 234444321110 01111222211 1112334455
Q ss_pred EecCCCCEEEEEECCCcEEEEeCCc-cc-----eeeecccCCCCeEEEEEecCCCEEEEE
Q 005352 494 FLPQDSSKVMVSCADSQVRILQGPN-VI-----GKYKGLRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 494 ~~p~~~~~l~~~s~dg~I~iwd~~~-~~-----~~~~~~~~~~~v~~l~~s~dg~~l~sg 547 (701)
+.+.++.++++--..+.|..|+... .. ..+.....-..+..+.+.++|.+.+..
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 6544667777777789999999865 22 111111123345667766666544444
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=75.83 E-value=83 Score=33.06 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCC-EEEEEeCCCcEEEEEe
Q 005352 251 GSILTMKFSPDGQ-YLASAGDDGVVRLWQV 279 (701)
Q Consensus 251 ~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~ 279 (701)
..-+.|+|.|+|. .|+.+...|.|++++.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~ 43 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTP 43 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeC
Confidence 3467999999996 4555667899888863
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=74.61 E-value=33 Score=36.15 Aligned_cols=114 Identities=11% Similarity=0.070 Sum_probs=62.9
Q ss_pred CcEEEEEEeeCCC-eEEEEecCCcEEEEECCCCeeeeeeeEEeecccC-----CCCCCeeEEEEecC---CCCEEEEEEC
Q 005352 437 QIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK-----APCKRITGFQFLPQ---DSSKVMVSCA 507 (701)
Q Consensus 437 ~~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~i~~l~~~p~---~~~~l~~~s~ 507 (701)
.....|+|.|+|. .|+++...|.|++++....... .....+..... ........|+++|+ ++.++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~-~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFK-EPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCS-SCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeee-eeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 4578899999996 6777888999999975432110 00011111111 12456789999984 3444444332
Q ss_pred C------------CcEEEEeCCc----------cceeeecc--cCCCCeEEEEEecCCCEEEEEeCCC
Q 005352 508 D------------SQVRILQGPN----------VIGKYKGL--RRSGNQLSACFTSDGKHIVSAGEDS 551 (701)
Q Consensus 508 d------------g~I~iwd~~~----------~~~~~~~~--~~~~~v~~l~~s~dg~~l~sgs~Dg 551 (701)
+ ..|.-|.+.. ....+... .....-..|.|.|||.+.++.+..+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 1333344321 11112211 1233467899999998777766543
No 356
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=74.39 E-value=78 Score=32.10 Aligned_cols=194 Identities=11% Similarity=0.097 Sum_probs=112.3
Q ss_pred cCC-eEEEEECCCcEEEEECCC---------CeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe---CCC----
Q 005352 364 KNN-YLLSASIDKTVRLWRVGN---------DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA---VLS---- 426 (701)
Q Consensus 364 ~~~-~l~s~s~dg~I~iWd~~~---------~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd---~~~---- 426 (701)
++. ++++.+.+|.|+--.+.. +..-..++..+.+..+.... ....|+..+..|.++-+. ++.
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 444 888999999999765421 22233445667777776665 666777777788766554 332
Q ss_pred --CcEE-EE--ecCCCcEEEEEEee---CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC
Q 005352 427 --CHVV-DW--VDIRQIVTAVCYRP---DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (701)
Q Consensus 427 --~~~~-~~--~~~~~~i~~i~~sp---~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~ 498 (701)
|..+ .. +.....|.++.... ++.+|+.++..|.++.-.+..-......-..... . .....+..+.... +
T Consensus 84 a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~-L-~~~d~lv~v~~~~-~ 160 (370)
T 3l6v_A 84 ARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAIN-L-DEGDALVGVALTD-G 160 (370)
T ss_dssp SCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSC-C-CTTCCEEEEEEEC-S
T ss_pred cCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEE-e-CCCCEEEEEEEeC-C
Confidence 1111 11 12334555554332 4568999999999998887543211111111111 1 1234455555554 4
Q ss_pred CCEEEEEECCCcEEEEeCCccc---------eeeecccCCCCeEEEEEec------------------------------
Q 005352 499 SSKVMVSCADSQVRILQGPNVI---------GKYKGLRRSGNQLSACFTS------------------------------ 539 (701)
Q Consensus 499 ~~~l~~~s~dg~I~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~------------------------------ 539 (701)
...++..+.+|.+..+...... .... ......|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~-L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIR-LAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-CCTTCCEEEEEEECCC----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEE-eCCCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 5678888888888888754221 1111 12345566665554
Q ss_pred -----CCCEEEEEeCCCcEEEEeCCCCC
Q 005352 540 -----DGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 540 -----dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++.+|++.+..|..+...+..-.
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~ 267 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYP 267 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSC
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhc
Confidence 45689999999999988876543
No 357
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=72.93 E-value=22 Score=38.28 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=79.4
Q ss_pred cCeEEEEEecCC-eEEE-EECCCcEEEEECCCC------ee-------eeeecCCCCeEEEEEeeCCCCEEEEEEcCCcE
Q 005352 355 GEILDLSWSKNN-YLLS-ASIDKTVRLWRVGND------HC-------LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKV 419 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s-~s~dg~I~iWd~~~~------~~-------~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v 419 (701)
.....+..+|+| +++. +-.+.++.++|+... +. +......-.....+|.+ +++...+-..|..|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeeecceE
Confidence 344567889999 5554 445889999998742 11 22233455678899999 88777777799999
Q ss_pred EEEeCCCC----------cEEEEecCCCcEEEEEE------eeCCCeEEEEec---CCc----------EEEEECCCCee
Q 005352 420 RIWAVLSC----------HVVDWVDIRQIVTAVCY------RPDGQGGIVGSM---MGD----------CRFYNVSDNHL 470 (701)
Q Consensus 420 ~iwd~~~~----------~~~~~~~~~~~i~~i~~------sp~g~~l~~gs~---dg~----------v~i~d~~~~~~ 470 (701)
..|++... .++..+.....+-.+.- .|+|++|++... |.. -.++|+...++
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM 481 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDEM 481 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSSC
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCce
Confidence 99999653 45555665555555544 579999999754 333 36777776655
Q ss_pred ee
Q 005352 471 EL 472 (701)
Q Consensus 471 ~~ 472 (701)
.+
T Consensus 482 ~l 483 (638)
T 3sbq_A 482 KL 483 (638)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 358
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=68.64 E-value=87 Score=30.24 Aligned_cols=182 Identities=10% Similarity=-0.033 Sum_probs=96.4
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCCCeeeee-ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC-cEEEEe
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWV 433 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~-~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~ 433 (701)
.|..|+......++. . ||.|..|-....-.+.. ......|..++... ...++. . ||.|..|-.... ++-.-.
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 566776544433333 4 89999997554322211 11234577776643 233333 4 999999976542 211111
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
.....|..|+...+ ..++-+ +|.|..|-.......- ........|..++.-. .+.++-. |+.|+.
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg--------~~~~~~~~i~~i~~G~---~~~~~l~-~G~v~~ 163 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT--------VPAEAQSGVTALDGGV---YTALAVK-NGGVIA 163 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS--------CCGGGGSSEEEEEECS---SEEEEEE-TTEEEE
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC--------CCccCCCCeEEEEccc---CEEEEEE-CCEEEE
Confidence 12346777766543 333444 8999999876432110 0111224466665533 3334444 799999
Q ss_pred EeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 514 LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
|-....-+.-........|..++...+.. ++ - .||.|+.|-.+..
T Consensus 164 wG~n~~gqlg~p~~~~~~v~~i~~G~~hs-~a-l-~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 164 WGDNYFGQTTVPAEAQSGVDDVAGGIFHS-LA-L-KDGKVIAWGDNRY 208 (282)
T ss_dssp EECCTTSTTSCCGGGGSSEEEEEECSSEE-EE-E-ETTEEEEEECCTT
T ss_pred ecCCCCCCCCCceecCCCeEEEEecCCEE-EE-E-ECCeEEEEECCCC
Confidence 97653222111111234677776654433 23 3 5999999976554
No 359
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=67.63 E-value=1e+02 Score=30.62 Aligned_cols=205 Identities=11% Similarity=0.046 Sum_probs=114.5
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEE---ECCC------Ceeeee---ecCCCCeEEEEEeeC--CCCEEEEEEcCCcE
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLW---RVGN------DHCLRV---FPHSNYVTCVHFNPV--DDNYFISGSIDGKV 419 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iW---d~~~------~~~~~~---~~h~~~V~~l~f~p~--~~~~l~sgs~dg~v 419 (701)
+.+..+...... .|+.-+..|.++-. ++.. |..+.. +.....|..+...+. ++.+++..+.+|.+
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 344444333333 66666666765544 4432 232211 224455666544431 36799999999999
Q ss_pred EEEeCCCCc-------EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECC--CCeeeeeeeEEeecccCCCCCCee
Q 005352 420 RIWAVLSCH-------VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS--DNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 420 ~iwd~~~~~-------~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
+.-.+..-. ....+...+.+..+........++..+..|.+..+... .-...-....-.....-.....|.
T Consensus 122 Kr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv 201 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLL 201 (327)
T ss_dssp EEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEE
T ss_pred EEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEE
Confidence 988764321 11112224456556555566788889999999888876 211100000000111122345677
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEeCCccce---------eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 491 GFQFLPQDSSKVMVSCADSQVRILQGPNVIG---------KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~---------~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
++...+ ....++..+..|.++.-.+..... .++.......+..+....+...|+..+.+|.+.-+....
T Consensus 202 ~~~~~~-~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 202 SLNVVR-EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEECC-TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEC-CCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 776665 456899999999998887543221 122111134566655555556777777888888887654
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=67.52 E-value=41 Score=39.23 Aligned_cols=37 Identities=14% Similarity=0.400 Sum_probs=32.1
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP 392 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~ 392 (701)
.|.+++..++. ++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56777777776 99999999999999999999998764
No 361
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=67.10 E-value=1e+02 Score=30.38 Aligned_cols=189 Identities=9% Similarity=0.044 Sum_probs=113.2
Q ss_pred eEEEEECCCcEEEEECCCCeee---------eeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC---CC------c
Q 005352 367 YLLSASIDKTVRLWRVGNDHCL---------RVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL---SC------H 428 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~---------~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~---~~------~ 428 (701)
++++.+.+|.|+--.+..-... ..+...+.+..+.... ....++..+..|.++-+... .. .
T Consensus 10 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~ 88 (312)
T 1suu_A 10 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRASKGQ 88 (312)
T ss_dssp EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC-------C
T ss_pred EEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCccCCCc
Confidence 7888999999998866433211 1123445666666655 66778888888987766542 21 1
Q ss_pred ----EEEEecCCCcEEEEEEee---CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCE
Q 005352 429 ----VVDWVDIRQIVTAVCYRP---DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (701)
Q Consensus 429 ----~~~~~~~~~~i~~i~~sp---~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~ 501 (701)
.+. +.....|.++...+ +..+++..+..|.++...+..-......-.... .......+..+.... +...
T Consensus 89 ~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i--~L~~~d~lv~~~~~~-~~~~ 164 (312)
T 1suu_A 89 NISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVI--KLNDKDFVTSAEIVF-KDEK 164 (312)
T ss_dssp BGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECB--CCCTTCCEEEEEEEC-TTCE
T ss_pred ChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEE--ecCCCCEEEEEEEeC-CCCE
Confidence 111 12234455554333 467889999999999888754321110111111 112245566665554 4567
Q ss_pred EEEEECCCcEEEEeCCccc---------eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 502 VMVSCADSQVRILQGPNVI---------GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 502 l~~~s~dg~I~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
++..+.+|.+..+...... ..... .....|..+..-.++..|++.+..|..+...+..-
T Consensus 165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L-~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL-KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC-CTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe-CCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 8899999999888765421 11111 13456677666556778888999999999887654
No 362
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=66.36 E-value=1.1e+02 Score=30.40 Aligned_cols=196 Identities=11% Similarity=-0.006 Sum_probs=105.3
Q ss_pred CCeEEEEECCCcEEEEEC---C------CCeeeee---ecCCCCeEEEEEeeC--CCCEEEEEEcCCcEEEEeCCC----
Q 005352 365 NNYLLSASIDKTVRLWRV---G------NDHCLRV---FPHSNYVTCVHFNPV--DDNYFISGSIDGKVRIWAVLS---- 426 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~---~------~~~~~~~---~~h~~~V~~l~f~p~--~~~~l~sgs~dg~v~iwd~~~---- 426 (701)
...|+..+..|.+.-... . .|.++.. +.....|..+...+. ++.+++.++.+|.++...+..
T Consensus 50 ~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~ 129 (323)
T 1wp5_A 50 KDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQ 129 (323)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCS
T ss_pred CCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhc
Confidence 337777777777655543 2 2332211 223445665543331 256789999999999987631
Q ss_pred ----CcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 427 ----CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 427 ----~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
+.....+...+.+-.+........++..+.+|.+..+....-...-....-...........|.++...+.+...+
T Consensus 130 ~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~l 209 (323)
T 1wp5_A 130 RYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESI 209 (323)
T ss_dssp CCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEE
T ss_pred cccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEE
Confidence 1111112223555555555556678889999999888875421110000001111112335566666555333278
Q ss_pred EEEECCCcEEEEeCCccc---------eeeecc-cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 503 MVSCADSQVRILQGPNVI---------GKYKGL-RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~~~---------~~~~~~-~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
++.+..|..+..++.... ...+.. .....+..+....++..|+..+..|.+.-..+..
T Consensus 210 l~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 210 VVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred EEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 888999988887765321 111111 1222455443334445666777788777766654
No 363
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=65.64 E-value=98 Score=35.10 Aligned_cols=159 Identities=11% Similarity=0.064 Sum_probs=81.4
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecC-------CCcEEEEEEeeC-CCeEEEEecCCc----E
Q 005352 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDI-------RQIVTAVCYRPD-GQGGIVGSMMGD----C 460 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~-------~~~i~~i~~sp~-g~~l~~gs~dg~----v 460 (701)
...|.+|+++|.+...++++...+.|...+= .++.- ..... ...+.+|+++|. ...++++..... -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 4689999999966778888887776665542 33322 22221 236999999984 345555543311 3
Q ss_pred EEEECCCCeeeeeeeEEeeccc---CCCCCCeeEEEEecCCCCEEEEEECCCcEEEE-eCC-ccceeeecc---cCCCCe
Q 005352 461 RFYNVSDNHLELDAEICVHSKK---KAPCKRITGFQFLPQDSSKVMVSCADSQVRIL-QGP-NVIGKYKGL---RRSGNQ 532 (701)
Q Consensus 461 ~i~d~~~~~~~~~~~~~~~~~~---~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw-d~~-~~~~~~~~~---~~~~~v 532 (701)
.||-..++-...... ...... ......+..+++.|.+...++++...+.|..= |.. +........ .....+
T Consensus 93 ~v~~S~DgG~TW~~~-~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIY-ESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEE-ECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceec-cCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCe
Confidence 444433322211111 110000 00112356788888767777777744444331 211 222111100 112457
Q ss_pred EEEEEecC-CCEEEEEeCC-CcEE
Q 005352 533 LSACFTSD-GKHIVSAGED-SNVY 554 (701)
Q Consensus 533 ~~l~~s~d-g~~l~sgs~D-g~I~ 554 (701)
..+.++|. ...|+.+..+ +.|+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEEEECTTSTTCEEEEESSTTCEE
T ss_pred EEEEECCCCCCEEEEEEcCCCeEE
Confidence 88889884 4456666554 4444
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=63.80 E-value=1.1e+02 Score=29.55 Aligned_cols=149 Identities=8% Similarity=0.019 Sum_probs=88.0
Q ss_pred CeEEEEECCCcEEEEECCCC------eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC---------cEE
Q 005352 366 NYLLSASIDKTVRLWRVGND------HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC---------HVV 430 (701)
Q Consensus 366 ~~l~s~s~dg~I~iWd~~~~------~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~---------~~~ 430 (701)
.+++..+.+|.|+-..+..- .....+...+.+..+.... ....++..+..|.+..+....- ...
T Consensus 81 ~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~ 159 (276)
T 3no0_A 81 NRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGVQG 159 (276)
T ss_dssp SEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC
T ss_pred CEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEE
Confidence 38999999999999886543 2222233456676666655 5667888888999888765321 111
Q ss_pred EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc
Q 005352 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (701)
Q Consensus 431 ~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~ 510 (701)
..+.....|..+...+++..+++.+..|.++...+..-........-.... .....+..+.... +...++..+.+|.
T Consensus 160 i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~-~~~~i~~~t~~G~ 236 (276)
T 3no0_A 160 IKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIK-EEVELLITTKNGK 236 (276)
T ss_dssp CCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEES-SEEEEEEEETTSC
T ss_pred EccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeC-CCCEEEEEcCCCe
Confidence 112234556666666667789999999999988875432211000000000 1223444444433 4456777778888
Q ss_pred EEE--EeCCc
Q 005352 511 VRI--LQGPN 518 (701)
Q Consensus 511 I~i--wd~~~ 518 (701)
+.. ++...
T Consensus 237 ~ir~~~~~~~ 246 (276)
T 3no0_A 237 AFYDKINQKD 246 (276)
T ss_dssp EEEEEEEGGG
T ss_pred EEEeeeCHHH
Confidence 777 76543
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=62.69 E-value=30 Score=40.34 Aligned_cols=40 Identities=13% Similarity=0.246 Sum_probs=35.0
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
.|.++...++..+|+|-+.|+++|||++.+++++.+..+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 5788888888899999999999999999999988776543
No 366
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=61.16 E-value=1.3e+02 Score=29.52 Aligned_cols=189 Identities=11% Similarity=0.108 Sum_probs=105.4
Q ss_pred eEEEEECCCcEEEEECCCCeeee---------eecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe---CCCC------c
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLR---------VFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA---VLSC------H 428 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~---------~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd---~~~~------~ 428 (701)
.+++.+.+|.|+--.+.+.+... .+...+.+..+.... ....|+..+..|.++-+. ++.. .
T Consensus 5 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~ 83 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRGARGR 83 (307)
T ss_dssp EEEEEETTSEEEEEECC--------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSSSCCE
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCCCCCe
Confidence 67888999999877665432211 123445565555555 566777777788865554 3322 1
Q ss_pred EE-EE--ecCCCcEEEEEEe---eCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 429 VV-DW--VDIRQIVTAVCYR---PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 429 ~~-~~--~~~~~~i~~i~~s---p~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
.+ .. +.....|.++... .++.+++..+..|.++--.+..-............ .. ....+..+.... +...+
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~-l~-~~d~lv~~~~~~-~~~~i 160 (307)
T 1zi0_A 84 PIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIK-LV-DGDELIGVDLTS-GEDEV 160 (307)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSC-CC-TTCCEEEEEEEC-TTCEE
T ss_pred EhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEE-EC-CCCEEEEEEEeC-CCCEE
Confidence 11 11 2234456555432 35667999999999998877532111000011111 11 124555555554 45678
Q ss_pred EEEECCCcEEEEeCCccce---------eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 503 MVSCADSQVRILQGPNVIG---------KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~~~~---------~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
+..+.+|.+..+....... ... ......|.++....++..|++.+..|.++-.++..
T Consensus 161 ~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~-L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 161 MLFSAEGKVVRFKESSVRAMGCNTTGVRGIR-LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTCCCEECCC-CCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEECCCCcEEEEEHHHcCccCCCCCCeEeEE-eCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 8888888888877543211 111 12345677776555667788889999998887754
No 367
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=57.88 E-value=1.4e+02 Score=29.12 Aligned_cols=194 Identities=11% Similarity=0.053 Sum_probs=106.8
Q ss_pred CCeEEEEECCCcEEEEEC---CC------Ceeee---eecCCCCeEEEEEee--CCCCEEEEEEcCCcEEEEeCCC----
Q 005352 365 NNYLLSASIDKTVRLWRV---GN------DHCLR---VFPHSNYVTCVHFNP--VDDNYFISGSIDGKVRIWAVLS---- 426 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~---~~------~~~~~---~~~h~~~V~~l~f~p--~~~~~l~sgs~dg~v~iwd~~~---- 426 (701)
...|+..+..|.++-... .. |..+. .+.....|..+...+ .++.+++..+.+|.++.-.+..
T Consensus 53 ~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~ 132 (307)
T 1zi0_A 53 HDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL 132 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTC
T ss_pred CCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcc
Confidence 347777777787655543 22 22221 123445566664421 1456788999999999887632
Q ss_pred ---CcE-EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 427 ---CHV-VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 427 ---~~~-~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
+.. +.+.. .+.+-.+........++..+.+|.+..+....-...-....-...........|.++...+ +...+
T Consensus 133 ~r~G~~~i~l~~-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~l 210 (307)
T 1zi0_A 133 RTAGKVAIKLVD-GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPR-GDGAI 210 (307)
T ss_dssp CTTCEESSCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCC-SSCEE
T ss_pred ccCCeEEEEECC-CCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEec-CCCEE
Confidence 111 12222 3555555555556678888999998888775421110000001111122335566665554 45678
Q ss_pred EEEECCCcEEEEeCCccce---------eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 503 MVSCADSQVRILQGPNVIG---------KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~~~~---------~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
++.+..|.++-.++..... .++.....+.+..+....+...|+..+.+|.+.-..+..
T Consensus 211 l~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 211 LTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 8889999998887643221 112111235555555444445566667778777776654
No 368
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=52.79 E-value=1.7e+02 Score=28.45 Aligned_cols=170 Identities=10% Similarity=0.044 Sum_probs=87.3
Q ss_pred EEecCC-eEEEEE----CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEc-CCcEEEEeCCCCcEEEEec
Q 005352 361 SWSKNN-YLLSAS----IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLSCHVVDWVD 434 (701)
Q Consensus 361 ~~s~~~-~l~s~s----~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~-dg~v~iwd~~~~~~~~~~~ 434 (701)
.|++++ .|+-.. ....|..-++..........+.. .+|+| +++.|+-.+. ...|.+-++..+....+..
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~-~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~ 184 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNT-SDRYFYYNNPKNGQLYRYDTASQSEALFYD 184 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEE-ETTEEEEECTTTCCEEEEETTTTEEEEEEC
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeE-ECCEEEEEeCCCceEEEEECCCCCEEEEeC
Confidence 456666 555443 33455555665444443333332 45677 6666665543 5678888887766554433
Q ss_pred CCCcEEEEEEeeCCCeEEEEecCC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE--CCCc
Q 005352 435 IRQIVTAVCYRPDGQGGIVGSMMG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC--ADSQ 510 (701)
Q Consensus 435 ~~~~i~~i~~sp~g~~l~~gs~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s--~dg~ 510 (701)
+... ..+.|++.+|+-....+ .|..-++........ . ...+. .+.| .+..|..+. ..+.
T Consensus 185 --~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~L-----t------~~~~~--~~~~-~g~~Iy~~~~~~~~~ 247 (302)
T 3s25_A 185 --CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVL-----T------EANIE--HYNV-YGSLIFYQRGGDNPA 247 (302)
T ss_dssp --SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEEC-----S------CSCEE--EEEE-ETTEEEEEECSSSCE
T ss_pred --CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEE-----e------CCCcc--eEEE-CCCEEEEEECCCCcE
Confidence 2232 34669998888766543 566666665443211 0 11222 3666 455555443 2456
Q ss_pred EEEEeCCccc-eeeecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeC
Q 005352 511 VRILQGPNVI-GKYKGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNC 558 (701)
Q Consensus 511 I~iwd~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~ 558 (701)
|...++.... ..+.. ..+. .+++.+.+|+-.. ..+.|+.-++
T Consensus 248 i~~~~~DG~~r~~l~~----~~~~--~i~i~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 248 LCVVKNDGTGFKELAK----GEFC--NINVTSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp EEEEETTSCCCEEEEE----SCEE--EEEECSSEEEEEETTTCCEEEEES
T ss_pred EEEEECCCCccEEeeC----Cccc--eEEEeCCEEEEEECCCCeEEEEEC
Confidence 6666654322 22211 1233 4455666776554 3344544443
No 369
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=46.11 E-value=3.3e+02 Score=30.32 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=61.5
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-------CCcEEEEEEee-CCCeEEEEecC-------Cc
Q 005352 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-------RQIVTAVCYRP-DGQGGIVGSMM-------GD 459 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-------~~~i~~i~~sp-~g~~l~~gs~d-------g~ 459 (701)
+.|..|+++|.+.+.++++...+.|...+-....-..+... ...|.+|+++| +...++++... +.
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 38999999996667777777667666665333222222221 13589999998 44555555422 12
Q ss_pred EEEEECCCCeeeeeeeEEeeccc---CCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 460 CRFYNVSDNHLELDAEICVHSKK---KAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 460 v~i~d~~~~~~~~~~~~~~~~~~---~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
..||...++-...... ...... ......+..|++.|.++..++++...
T Consensus 103 ~~l~~S~DgG~TW~~~-~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 103 GAILRSTDRGETWEKT-ILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CEEEEESSSSSSCEEE-ECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccEEEeCCCCCCcccC-CCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 4555544332221111 110000 00012346789999877888887643
No 370
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=45.57 E-value=2.3e+02 Score=27.75 Aligned_cols=194 Identities=15% Similarity=0.145 Sum_probs=103.0
Q ss_pred CCeEEEEECCCcEEEEECC---CC------ee---eeeecCCCCeEEEEEeeC--CCCEEEEEEcCCcEEEEeCCCC---
Q 005352 365 NNYLLSASIDKTVRLWRVG---ND------HC---LRVFPHSNYVTCVHFNPV--DDNYFISGSIDGKVRIWAVLSC--- 427 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~---~~------~~---~~~~~h~~~V~~l~f~p~--~~~~l~sgs~dg~v~iwd~~~~--- 427 (701)
...++..+..|.++-.... .. .. ...+.....|..+...+. +..+|+..+..|.++...+..-
T Consensus 58 ~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~ 137 (312)
T 1suu_A 58 HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV 137 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-
T ss_pred CCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc
Confidence 3377777788876666542 11 11 111233455665543321 3567888899999998876322
Q ss_pred ----cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 428 ----HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 428 ----~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
.....+...+.+-.+........++..+.+|.+..+....-...-....-...........+.++.... ++..++
T Consensus 138 r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~-~~~~l~ 216 (312)
T 1suu_A 138 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVK-ENPYLL 216 (312)
T ss_dssp ---CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECT-TCSEEE
T ss_pred CCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEEC-CCCeEE
Confidence 111112224556666555556788899999999999876421110000001111111234566666554 456788
Q ss_pred EEECCCcEEEEeCCccce---------eeecc-cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 504 VSCADSQVRILQGPNVIG---------KYKGL-RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~---------~~~~~-~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
+.+..|......+..... .+... .....+..+..-.+...|...+..|.+.-..+.
T Consensus 217 ~vt~~G~~kr~~~~e~~~~~R~~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~ 282 (312)
T 1suu_A 217 IVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAG 282 (312)
T ss_dssp EEETTSEEEEEEGGGSCBCCTTCCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGG
T ss_pred EEECCCceEEEEHHHhcccCCCCCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcc
Confidence 889999998888654311 11111 122344443333344455555566655444443
No 371
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=42.00 E-value=54 Score=36.44 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=31.8
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecC
Q 005352 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (701)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~ 290 (701)
..|.++.+ +..+|+|-+.|+++|+|++.+++++....+
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45766665 467999999999999999999998887776
No 372
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=42.00 E-value=2.8e+02 Score=27.87 Aligned_cols=206 Identities=10% Similarity=0.052 Sum_probs=108.1
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEE---CC------CCeeeee---ecCCCCeEEEEEee--CCCCEEEEEEcCCcE
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWR---VG------NDHCLRV---FPHSNYVTCVHFNP--VDDNYFISGSIDGKV 419 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd---~~------~~~~~~~---~~h~~~V~~l~f~p--~~~~~l~sgs~dg~v 419 (701)
+.+..+...... .|+..+..|.+.-+. +. .|..+.. +.....|.++.... ..+.+|+.++..|.+
T Consensus 46 D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~v 125 (370)
T 3l6v_A 46 DFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTV 125 (370)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEE
T ss_pred CEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeE
Confidence 344444443333 666667777665444 32 2222221 23445666655432 135689999999999
Q ss_pred EEEeCCCC-------cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEE
Q 005352 420 RIWAVLSC-------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (701)
Q Consensus 420 ~iwd~~~~-------~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l 492 (701)
+...+..- .....+.....+-.+........++..+..|.+..+....-...-....-...........|.++
T Consensus 126 Krt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~ 205 (370)
T 3l6v_A 126 KKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSL 205 (370)
T ss_dssp EEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEE
T ss_pred EEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEE
Confidence 98875321 11111122345555555555668888889999888876532111000000011111223445555
Q ss_pred EEecC----------------------------------CCCEEEEEECCCcEEEEeCCccce---------eeecccCC
Q 005352 493 QFLPQ----------------------------------DSSKVMVSCADSQVRILQGPNVIG---------KYKGLRRS 529 (701)
Q Consensus 493 ~~~p~----------------------------------~~~~l~~~s~dg~I~iwd~~~~~~---------~~~~~~~~ 529 (701)
...+. +...+++.+..|..+...+..... .++.....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~ 285 (370)
T 3l6v_A 206 IVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN 285 (370)
T ss_dssp EEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTT
T ss_pred EEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCC
Confidence 54441 345788999999988887653222 12222223
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 530 GNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 530 ~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
+.+..+.+..+...|+..+..|.+.-..+..
T Consensus 286 g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 286 GKLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp CSEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred CcEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 4555554444445566666777766666544
No 373
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=41.67 E-value=4.2e+02 Score=29.75 Aligned_cols=156 Identities=9% Similarity=0.051 Sum_probs=80.8
Q ss_pred ccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-C-------CCCeEEEEEeeCCCCEEEEEEcCCc----E
Q 005352 354 SGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-H-------SNYVTCVHFNPVDDNYFISGSIDGK----V 419 (701)
Q Consensus 354 ~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h-------~~~V~~l~f~p~~~~~l~sgs~dg~----v 419 (701)
...|.+|+++|.+ .++.+...+.|...+= .++.-..+. + ...|.+|++.|.+.+.++.+..... -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 3589999999974 7777887777766653 233222222 1 2469999999855555655543311 2
Q ss_pred EEE-eCCCCcEEEEecC----------CCcEEEEEEeeC-CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCC
Q 005352 420 RIW-AVLSCHVVDWVDI----------RQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 420 ~iw-d~~~~~~~~~~~~----------~~~i~~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 487 (701)
.|| ....++.-..... ...+..++++|. ...++++...+. ||-..++-........... ......
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~-~~~~~~ 169 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPD-AFTNGI 169 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCC-CCSTTT
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCcc-ccCCCC
Confidence 333 3334433222211 113556788874 346666664433 3333322111110000000 001124
Q ss_pred CeeEEEEecCCCCEEEEEECC-CcEEE
Q 005352 488 RITGFQFLPQDSSKVMVSCAD-SQVRI 513 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~d-g~I~i 513 (701)
.+..+.+.|.++..++++..+ +.|..
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~~~~~v~~ 196 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASATAPQGMYV 196 (789)
T ss_dssp CEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred CeEEEEECCCCCCEEEEEEcCCCeEEE
Confidence 578899998777777777765 44443
No 374
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=41.51 E-value=4.1e+02 Score=29.54 Aligned_cols=102 Identities=11% Similarity=0.075 Sum_probs=56.8
Q ss_pred CeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecC-------CCCeEEEEEeeCCCCEEEEEEcCC-------cE
Q 005352 356 EILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPH-------SNYVTCVHFNPVDDNYFISGSIDG-------KV 419 (701)
Q Consensus 356 ~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h-------~~~V~~l~f~p~~~~~l~sgs~dg-------~v 419 (701)
.|..|+++|.+ .++.+...+.|..++-....-.....+ ...|.+|+++|.+.+.++.+.... ..
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~ 103 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMG 103 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCc
Confidence 79999999974 666677667766665333322222221 235899999986655555554221 23
Q ss_pred EEEeC-CCCcEEEEec--C--------CCcEEEEEEeeC-CCeEEEEecC
Q 005352 420 RIWAV-LSCHVVDWVD--I--------RQIVTAVCYRPD-GQGGIVGSMM 457 (701)
Q Consensus 420 ~iwd~-~~~~~~~~~~--~--------~~~i~~i~~sp~-g~~l~~gs~d 457 (701)
.||.. ..++.-.... . ...+..++++|. ...++++...
T Consensus 104 ~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 104 AILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp EEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred cEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 45543 3333211111 1 113467889885 4567777643
No 375
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=40.68 E-value=2.8e+02 Score=27.32 Aligned_cols=192 Identities=7% Similarity=-0.003 Sum_probs=109.6
Q ss_pred cCC-eEEEEECCCcEEEEECCCC----eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC---CC------CcE
Q 005352 364 KNN-YLLSASIDKTVRLWRVGND----HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV---LS------CHV 429 (701)
Q Consensus 364 ~~~-~l~s~s~dg~I~iWd~~~~----~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~---~~------~~~ 429 (701)
|+. .+++.+.+|.|+--.+... .....+...+.+..+.... ....|+..+..|.++-+.. +. |..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 344 7888899999987654321 1111233455666665555 6667777778888665543 22 221
Q ss_pred E-EE--ecCCCcEEEEEEeeC---CCeEEEEecCCcEEEEECCCCeeee-eeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 430 V-DW--VDIRQIVTAVCYRPD---GQGGIVGSMMGDCRFYNVSDNHLEL-DAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 430 ~-~~--~~~~~~i~~i~~sp~---g~~l~~gs~dg~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
+ .. +.....|.++...++ +.+++..+.+|.++.-.+..-.... ..-..... ......+..+.... ....+
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~--l~e~d~lv~~~~~~-~~~~i 158 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGIN--LKNDDQVVDVHLTD-GMNEL 158 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSC--CCTTCCEEEEEEEC-SCSEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEE--eCCCCEEEEEEEeC-CCCEE
Confidence 1 11 122344555433332 5679999999999988875322111 00011111 11224455555554 45678
Q ss_pred EEEECCCcEEEEeCCccc---------eeeecccCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCCC
Q 005352 503 MVSCADSQVRILQGPNVI---------GKYKGLRRSGNQLSACFTSDGK-HIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~dg~-~l~sgs~Dg~I~iWd~~~ 560 (701)
+..+.+|.+..+...... ..... .....|.++..-+++. .|++.+..|..+.-++..
T Consensus 159 ~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 159 FLVTHNGYALWFDESEVSIVGVRAAGVKGMNL-KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEETTSEEEEEEGGGSCBCCSSCCCEECCCC-CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCcEEEEEHHHCcccCCCCcCEEEEEe-CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 888999998888764321 11111 1345677776555555 788889999988887765
No 376
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=38.85 E-value=59 Score=38.77 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=30.7
Q ss_pred CeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec
Q 005352 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD 434 (701)
Q Consensus 396 ~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 434 (701)
.+.+++..+ +..++++-+.|+++|||++.+++++...+
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 344555666 77899999999999999999999886554
No 377
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=35.87 E-value=3.5e+02 Score=27.14 Aligned_cols=197 Identities=13% Similarity=0.053 Sum_probs=103.3
Q ss_pred eEEEEEecCC-eEEEEECCCcEEEEECCCCe-----------eeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-----------CLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 357 I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~-----------~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
+..++++... +.+.-..||.|..|-....- ....+. ....|..|+. .....+.-..+|.|+.|
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTW 183 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEe
Confidence 3444554444 66666788899999543210 011111 2235666654 44566667789999999
Q ss_pred eCCCC-c--------EE--EEec--CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee----eeeeEEeecccCCC
Q 005352 423 AVLSC-H--------VV--DWVD--IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE----LDAEICVHSKKKAP 485 (701)
Q Consensus 423 d~~~~-~--------~~--~~~~--~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~----~~~~~~~~~~~~~~ 485 (701)
-.... + .. .... ....|..++........++-..+|.|..|-....... ......+.......
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 263 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC
Confidence 65321 1 11 1111 1234666665443356666778899999975431110 00000011111112
Q ss_pred CCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce----------eee-c-ccCCCCeEEEEEecCCCEEEEEeCCCcE
Q 005352 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG----------KYK-G-LRRSGNQLSACFTSDGKHIVSAGEDSNV 553 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~----------~~~-~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~I 553 (701)
...|..++.- ..+.++-..+|.|+.|-....-+ ... . ......|..++. -..+.+.-..||.|
T Consensus 264 ~~~v~~v~~G---~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v 338 (389)
T 3kci_A 264 GLGVVKVECG---SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEV 338 (389)
T ss_dssp TSCEEEEEEE---TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCE
T ss_pred CCcEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCE
Confidence 2346666553 45666678899999996532110 001 0 112234655554 33455666789999
Q ss_pred EEEeCCCC
Q 005352 554 YMWNCIGH 561 (701)
Q Consensus 554 ~iWd~~~~ 561 (701)
+.|-.+..
T Consensus 339 ~~wG~n~~ 346 (389)
T 3kci_A 339 YTWGDNDE 346 (389)
T ss_dssp EEEECCTT
T ss_pred EEeeCCCC
Confidence 99986653
No 378
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=32.74 E-value=5.6e+02 Score=28.56 Aligned_cols=157 Identities=8% Similarity=-0.015 Sum_probs=77.1
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEec------------CCCcEEEEEEee-CCCeEEEEecC-
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVD------------IRQIVTAVCYRP-DGQGGIVGSMM- 457 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~------------~~~~i~~i~~sp-~g~~l~~gs~d- 457 (701)
..+.|.+|+++|.+.+.++++...|.|...+ ..++.- .... ....+.+++++| +...++++...
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 4578999999997767788877666655443 223222 1111 123589999998 34555554431
Q ss_pred ----CcEEEEECCCCeeeeeeeEEeecccC-CCCCC--eeEEEEecCCCCEEEEEECCCcEEEE-eCC-ccceeeecc--
Q 005352 458 ----GDCRFYNVSDNHLELDAEICVHSKKK-APCKR--ITGFQFLPQDSSKVMVSCADSQVRIL-QGP-NVIGKYKGL-- 526 (701)
Q Consensus 458 ----g~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~~--i~~l~~~p~~~~~l~~~s~dg~I~iw-d~~-~~~~~~~~~-- 526 (701)
....||-..++-...... ....... ..... ...+++.|.+...++++...+.|..= |.. +........
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~-~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~S~DgG~TW~~~~~~~~~ 176 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQY-RSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWRSTDRAQTWSRMNQLPDS 176 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEE-ECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEEESSTTSSCEECTTSCCC
T ss_pred ccCCCCceEEEECCCCCCceec-cCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEEECCCCcCccccccCccc
Confidence 123444433321111110 1100000 00111 14688888766777777665544432 211 111111110
Q ss_pred -cCCCCeEEEEEecCC-CEEEEEeCCC
Q 005352 527 -RRSGNQLSACFTSDG-KHIVSAGEDS 551 (701)
Q Consensus 527 -~~~~~v~~l~~s~dg-~~l~sgs~Dg 551 (701)
.....+..++++|.. ..|+.+..++
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCCccceEEEEECCCCCCEEEEEEeCC
Confidence 012347788898753 4455555554
No 379
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=29.67 E-value=30 Score=41.36 Aligned_cols=40 Identities=13% Similarity=0.246 Sum_probs=33.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
.|.+++..++..+|+|-+.|+++|||++.+++++.+..+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4556677778899999999999999999999988877654
No 380
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=28.71 E-value=6.3e+02 Score=27.92 Aligned_cols=227 Identities=11% Similarity=0.092 Sum_probs=0.0
Q ss_pred EEccCCCEEEE-----EeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 257 KFSPDGQYLAS-----AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 257 ~fspdg~~Las-----gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
+++|++++++. |+.-..|+++|+.+++.+
T Consensus 136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~---------------------------------------------- 169 (711)
T 4hvt_A 136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFV---------------------------------------------- 169 (711)
T ss_dssp ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEEC----------------------------------------------
T ss_pred ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcC----------------------------------------------
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeE-------------EE-EEecCC-eEEEE----------ECCCcEEEEECCCC-
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEIL-------------DL-SWSKNN-YLLSA----------SIDKTVRLWRVGND- 385 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~-------------~l-~~s~~~-~l~s~----------s~dg~I~iWd~~~~- 385 (701)
.+.+. .+ +|..++ .+++. +....|+.|.+.+.
T Consensus 170 ----------------------~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~ 227 (711)
T 4hvt_A 170 ----------------------KNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESI 227 (711)
T ss_dssp ----------------------TTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCG
T ss_pred ----------------------CCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCCh
Q ss_pred ---eeeeeecCCCCeEEEEEeeCCCC-----EEEEEE---cCCcEEEEeCCC--CcEEEEecCCCcEEEEEEeeCCCeEE
Q 005352 386 ---HCLRVFPHSNYVTCVHFNPVDDN-----YFISGS---IDGKVRIWAVLS--CHVVDWVDIRQIVTAVCYRPDGQGGI 452 (701)
Q Consensus 386 ---~~~~~~~h~~~V~~l~f~p~~~~-----~l~sgs---~dg~v~iwd~~~--~~~~~~~~~~~~i~~i~~sp~g~~l~ 452 (701)
..+..-.....-......+ ++. .+++.+ ....+.+.+... ++...+....... +...+++..++
T Consensus 228 ~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~ 304 (711)
T 4hvt_A 228 EKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDAT--LQGSFKEYVFW 304 (711)
T ss_dssp GGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTCE--EEEEETTEEEE
T ss_pred HHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcce--EeeeECCEEEE
Q ss_pred ----------EEecCCcEEEEECCCC------eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC--cEEEE
Q 005352 453 ----------VGSMMGDCRFYNVSDN------HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS--QVRIL 514 (701)
Q Consensus 453 ----------~gs~dg~v~i~d~~~~------~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg--~I~iw 514 (701)
.....+.|...++.+. .......+..... ..+..+.+.. +.++++...++ .|.++
T Consensus 305 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~--~~l~~~~~~~~~~~l~~~ 377 (711)
T 4hvt_A 305 LLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN-----EVFNFISTTK--DRVFLATYDNVVAKVVTF 377 (711)
T ss_dssp ECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT-----EEEEEEEECS--SCEEEEEEETTEEEEEEE
T ss_pred EECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC-----CeEEEEEEEC--CEEEEEEEECCEEEEEEE
Q ss_pred eCCcc--ceee-ecccCCCCeEEEEEecCCCEEEEEeCC----CcEEEEeCCCCC
Q 005352 515 QGPNV--IGKY-KGLRRSGNQLSACFTSDGKHIVSAGED----SNVYMWNCIGHE 562 (701)
Q Consensus 515 d~~~~--~~~~-~~~~~~~~v~~l~~s~dg~~l~sgs~D----g~I~iWd~~~~~ 562 (701)
+.... .... ......+.+....+++++..++..... +.++.+|+. ++
T Consensus 378 ~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 378 TLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE 431 (711)
T ss_dssp CEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred ECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
No 381
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=28.62 E-value=6.5e+02 Score=28.02 Aligned_cols=153 Identities=9% Similarity=0.009 Sum_probs=75.9
Q ss_pred CccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-------------CCCCeEEEEEeeCCCCEEEEEEcC-
Q 005352 353 HSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-------------HSNYVTCVHFNPVDDNYFISGSID- 416 (701)
Q Consensus 353 h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-------------h~~~V~~l~f~p~~~~~l~sgs~d- 416 (701)
-.+.|..|.++|.+ .++.+...+.|...+= .++.-..+. ....+.+|+++|.+.+.++.+...
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~D-gG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNA-AKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEECC-CCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45689999999976 6667776666654432 222222111 123589999998555555554421
Q ss_pred ----CcEEEE-eCCCCcEEEEecC--------CC--cEEEEEEeeC-CCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 417 ----GKVRIW-AVLSCHVVDWVDI--------RQ--IVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 417 ----g~v~iw-d~~~~~~~~~~~~--------~~--~i~~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
....|| ....++.-..... .. ....++++|. ...++++...+. +|-..++-........+..
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~--l~~S~DgG~TW~~~~~~~~ 175 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQG--LWRSTDRAQTWSRMNQLPD 175 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSC--EEEESSTTSSCEECTTSCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCc--EEEECCCCcCccccccCcc
Confidence 113344 3333332211111 11 1246788875 345666655433 3322222111110000000
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg 509 (701)
.......+..+.+.|.++..++++..++
T Consensus 176 -~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 176 -SSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp -CSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred -cCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 0112245778899987666677777765
No 382
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=27.98 E-value=86 Score=34.82 Aligned_cols=37 Identities=11% Similarity=0.273 Sum_probs=29.6
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecC
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPH 393 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h 393 (701)
.|.++.+ ++.++++-+.|+++|+|++.+++++....-
T Consensus 223 ~Is~~~~-~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF-HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE-TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc-CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3554443 355999999999999999999999888764
No 383
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=27.06 E-value=4.9e+02 Score=26.04 Aligned_cols=188 Identities=12% Similarity=0.090 Sum_probs=99.1
Q ss_pred eEEEEECCCcEEEEECCCC--------e---eeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC------
Q 005352 367 YLLSASIDKTVRLWRVGND--------H---CLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC------ 427 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~--------~---~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~------ 427 (701)
..+.-..||.|..|-.... . ....+. ....+..++++. .....+.-..||.|+.|-....
T Consensus 64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 64 TLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred eEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 5556677888888854321 1 111111 233455566665 6667777788999999954321
Q ss_pred ---c--EEEEec-C-CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCee----eeeeeEEeecccCCCCCCeeEEEEec
Q 005352 428 ---H--VVDWVD-I-RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL----ELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 428 ---~--~~~~~~-~-~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
. ...... . ...|..|+.. ....++-..+|.|..|-...... .......+..........|..++...
T Consensus 143 ~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~ 220 (389)
T 3kci_A 143 NRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS 220 (389)
T ss_dssp SCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC
T ss_pred CCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC
Confidence 0 111111 1 1245555543 44566667789999997643110 00001111111122234566666543
Q ss_pred CCCCEEEEEECCCcEEEEeCCccce----------ee-ec-ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVIG----------KY-KG-LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~~----------~~-~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
...+.++-..++.|+.|-....-+ .. .. ......|..++... .+.+.-..||.|+.|-...
T Consensus 221 -g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 221 -GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp -SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSCEEEEECCG
T ss_pred -CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCeEEEEeCCC
Confidence 235777778899999996432111 01 11 11223466655543 3555557899999997654
No 384
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=24.24 E-value=2.3e+02 Score=30.48 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=43.2
Q ss_pred CCeEEEEEeeCCCCEEEEEEc------------CCcEEEEeCCCCcEEEEecC--CCcEEEEEEeeCCCeEEEEe
Q 005352 395 NYVTCVHFNPVDDNYFISGSI------------DGKVRIWAVLSCHVVDWVDI--RQIVTAVCYRPDGQGGIVGS 455 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~------------dg~v~iwd~~~~~~~~~~~~--~~~i~~i~~sp~g~~l~~gs 455 (701)
.....|.|.+ ++.+.+.... ...|..++..++++..+... ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4567899998 8887773321 12577777777887766543 35689999999999988864
No 385
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=21.18 E-value=5.2e+02 Score=24.26 Aligned_cols=151 Identities=8% Similarity=-0.004 Sum_probs=84.1
Q ss_pred CEEEEEEcCCcEEEEeCCCCc--EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee-cccCC
Q 005352 408 NYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH-SKKKA 484 (701)
Q Consensus 408 ~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~-~~~~~ 484 (701)
..+++.+.+|.|+--...... .+.+ ...+.+..+........|+..+..|.++-+....-......-..+. .....
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~l-ke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNY-KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCC-CTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccC-CCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 355667778887765543311 1111 2334455555555566788888889877665432100000000010 11122
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc-------eeeecccCCCCeEEEEEe-cCCCEEEEEeCCCcEEEE
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI-------GKYKGLRRSGNQLSACFT-SDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~-------~~~~~~~~~~~v~~l~~s-~dg~~l~sgs~Dg~I~iW 556 (701)
....|.++.... +..+++..+..|.++...+.... ..... .....+..+... ..+..|+..+.+|.+..+
T Consensus 82 ~~e~Iv~~~~~~-~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L-~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 82 PGATVDHMLMES-DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL-PENAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp TTCCEEEEECCC-TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCC-CTTCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred CCCEEEEEEEeC-CCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEE-CCCCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 345666664333 46678889999999998865332 11111 123455555555 345688889999999999
Q ss_pred eCCCC
Q 005352 557 NCIGH 561 (701)
Q Consensus 557 d~~~~ 561 (701)
.++.-
T Consensus 160 ~~~ei 164 (256)
T 1zvt_A 160 PVSDL 164 (256)
T ss_dssp EGGGS
T ss_pred EHHHC
Confidence 87653
Done!