Query 005356
Match_columns 700
No_of_seqs 129 out of 147
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 23:02:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vdy_A Hypothetical protein (R 100.0 5.3E-47 1.8E-51 357.5 13.0 136 3-138 2-137 (140)
2 3onk_A Epsin-3, ENT3; helix, p 99.9 2.8E-23 9.7E-28 198.0 9.9 114 15-133 14-131 (150)
3 1inz_A EPS15-interacting porte 99.9 2.2E-22 7.6E-27 191.5 12.2 114 15-133 26-142 (148)
4 1xgw_A Epsin 4; ENTH, enthopro 99.9 2.3E-22 7.8E-27 196.2 10.6 129 15-153 37-175 (176)
5 1eyh_A Epsin; superhelix of he 99.9 2.2E-22 7.5E-27 190.7 9.9 114 15-133 8-124 (144)
6 3zym_A Phosphatidylinositol-bi 98.7 3.2E-08 1.1E-12 104.0 8.4 127 2-131 11-144 (310)
7 3zyl_A Phosphatidylinositol-bi 98.6 6E-08 2.1E-12 100.2 8.6 126 2-130 11-143 (271)
8 1juq_A ADP-ribosylation factor 98.1 1.2E-05 4.3E-10 77.8 10.8 113 15-131 16-128 (171)
9 3g2s_A C-terminal fragment of 98.1 1.4E-05 4.7E-10 76.1 10.7 113 15-131 14-126 (149)
10 1mhq_A ADP-ribosylation factor 98.1 1.6E-05 5.5E-10 75.3 11.0 113 15-131 4-116 (148)
11 1x5b_A Signal transducing adap 98.1 1.2E-05 4.2E-10 77.2 9.9 105 15-131 18-125 (163)
12 3ldz_A STAM-1, signal transduc 98.0 2.6E-05 8.9E-10 73.1 11.2 105 15-131 8-114 (140)
13 1hx8_A Synapse-enriched clathr 98.0 7.1E-06 2.4E-10 85.6 7.7 126 3-130 7-149 (299)
14 3zyq_A Hepatocyte growth facto 97.8 4.1E-05 1.4E-09 76.9 8.3 108 15-131 11-118 (226)
15 1elk_A Target of MYB1; superhe 97.8 0.00011 3.7E-09 70.2 10.6 107 15-131 19-130 (157)
16 1dvp_A HRS, hepatocyte growth 97.8 4.4E-05 1.5E-09 76.0 7.9 108 15-131 8-115 (220)
17 1eyh_A Epsin; superhelix of he 97.7 0.0004 1.4E-08 65.8 12.9 107 269-381 6-124 (144)
18 1xgw_A Epsin 4; ENTH, enthopro 97.6 0.00058 2E-08 66.8 13.6 109 267-381 33-154 (176)
19 1inz_A EPS15-interacting porte 97.6 0.00032 1.1E-08 66.8 11.0 108 269-382 24-143 (148)
20 3onk_A Epsin-3, ENT3; helix, p 97.5 0.00077 2.6E-08 64.4 12.1 107 269-381 12-131 (150)
21 1vdy_A Hypothetical protein (R 97.4 0.00041 1.4E-08 65.6 9.2 109 273-387 16-138 (140)
22 3rru_A TOM1L1 protein; structu 97.2 0.00089 3E-08 63.9 8.9 110 15-131 19-130 (152)
23 1x5b_A Signal transducing adap 96.0 0.1 3.5E-06 50.0 13.4 109 271-384 18-130 (163)
24 1mhq_A ADP-ribosylation factor 95.3 0.2 6.9E-06 47.3 12.6 109 271-384 4-121 (148)
25 1juq_A ADP-ribosylation factor 95.1 0.15 5.3E-06 49.2 11.4 110 269-383 14-132 (171)
26 2qk1_A Protein STU2; STU2P, XM 95.1 0.08 2.7E-06 52.9 9.6 90 288-378 125-219 (249)
27 3ldz_A STAM-1, signal transduc 94.9 0.15 5E-06 47.6 10.3 110 270-384 7-119 (140)
28 3g2s_A C-terminal fragment of 94.9 0.27 9.1E-06 46.6 12.2 111 268-383 11-130 (149)
29 2qk2_A LP04448P; mini spindles 94.9 0.18 6.1E-06 48.9 11.2 106 272-379 99-205 (242)
30 1elk_A Target of MYB1; superhe 94.8 0.28 9.6E-06 46.6 12.1 110 268-382 16-133 (157)
31 1dvp_A HRS, hepatocyte growth 94.0 0.4 1.4E-05 47.4 11.7 109 270-383 7-119 (220)
32 3rru_A TOM1L1 protein; structu 93.9 0.62 2.1E-05 44.3 12.3 114 267-384 15-135 (152)
33 3zyq_A Hepatocyte growth facto 93.7 0.55 1.9E-05 47.0 12.1 109 271-384 11-123 (226)
34 2qk2_A LP04448P; mini spindles 92.3 0.31 1.1E-05 47.2 7.8 98 23-131 26-127 (242)
35 1sz9_A PCF11 protein; RNA poly 88.4 2.6 8.8E-05 39.5 10.0 95 286-384 22-119 (144)
36 2qk1_A Protein STU2; STU2P, XM 88.0 1 3.6E-05 44.8 7.5 73 48-131 144-220 (249)
37 1sz9_A PCF11 protein; RNA poly 87.5 2.4 8.1E-05 39.8 9.1 86 1-94 2-87 (144)
38 4flb_A Regulation of nuclear P 87.0 4.2 0.00014 36.8 10.3 106 267-379 5-112 (132)
39 2b4j_C PC4 and SFRS1 interacti 84.5 3.3 0.00011 37.0 8.0 67 48-127 8-77 (98)
40 4ffb_C Protein STU2; tubulin f 81.7 2.9 9.9E-05 41.5 7.3 72 49-131 138-212 (278)
41 4fu3_A Regulation of nuclear P 80.8 2.7 9.4E-05 38.0 6.2 107 269-379 6-113 (135)
42 3d9j_A RNA-binding protein 16; 79.4 12 0.00043 34.8 10.4 94 286-379 21-119 (145)
43 4ffb_C Protein STU2; tubulin f 79.2 1.9 6.6E-05 42.8 5.1 68 310-377 14-82 (278)
44 2of3_A ZYG-9; multifunctional 79.1 9.5 0.00033 39.2 10.3 97 271-375 132-232 (266)
45 1ibr_B P95, importin beta-1 su 78.9 3 0.0001 42.7 6.5 75 304-381 365-439 (462)
46 3clj_A Protein NRD1; CTD-inter 78.6 11 0.00037 36.3 9.8 92 287-378 21-128 (157)
47 2km4_A Regulator of TY1 transp 77.4 21 0.00072 33.0 11.2 106 269-379 5-115 (142)
48 1qgr_A Protein (importin beta 76.8 9.7 0.00033 42.6 10.4 88 291-381 352-439 (876)
49 1z9e_A PC4 and SFRS1 interacti 76.5 4.5 0.00015 37.8 6.2 71 48-131 8-84 (127)
50 1b3u_A Protein (protein phosph 75.9 9.1 0.00031 40.5 9.4 84 32-130 503-586 (588)
51 2iw3_A Elongation factor 3A; a 74.7 8.5 0.00029 46.4 9.6 90 289-382 117-207 (986)
52 2bpt_A Importin beta-1 subunit 73.9 9.9 0.00034 42.5 9.5 81 47-131 677-763 (861)
53 3ul1_B Importin subunit alpha- 71.8 6.6 0.00023 42.5 7.3 72 306-377 402-476 (510)
54 2bpt_A Importin beta-1 subunit 70.9 18 0.0006 40.5 10.6 87 290-379 354-440 (861)
55 4fdd_A Transportin-1; heat rep 68.7 13 0.00045 42.3 9.2 87 289-379 343-429 (852)
56 3ltj_A Alpharep-4; protein eng 67.3 16 0.00055 33.5 7.9 30 49-78 13-42 (201)
57 3d9j_A RNA-binding protein 16; 67.3 41 0.0014 31.3 10.6 84 7-94 3-93 (145)
58 1te4_A Conserved protein MTH18 66.4 10 0.00036 33.1 6.1 76 287-376 55-130 (131)
59 2jdq_A Importin alpha-1 subuni 66.1 6.3 0.00022 40.3 5.3 74 305-378 361-442 (450)
60 3ltj_A Alpharep-4; protein eng 65.9 18 0.00062 33.2 8.0 26 306-331 46-71 (201)
61 4b8j_A Importin subunit alpha- 65.6 17 0.00057 38.8 8.6 71 51-132 415-497 (528)
62 3ltm_A Alpha-REP4; protein eng 64.6 18 0.00061 33.5 7.7 29 50-78 19-47 (211)
63 3tpo_A Importin subunit alpha- 63.5 12 0.00041 40.6 7.1 74 306-379 421-498 (529)
64 4db6_A Armadillo repeat protei 62.2 18 0.00061 33.2 7.2 71 51-131 139-209 (210)
65 4b8j_A Importin subunit alpha- 62.2 16 0.00056 38.8 7.8 74 306-379 415-496 (528)
66 4db6_A Armadillo repeat protei 61.4 32 0.0011 31.5 8.7 69 305-378 138-208 (210)
67 1wa5_B Importin alpha subunit; 60.9 19 0.00065 38.5 8.1 73 51-132 429-511 (530)
68 3ltm_A Alpha-REP4; protein eng 60.2 26 0.00088 32.4 7.9 29 304-332 49-77 (211)
69 2of3_A ZYG-9; multifunctional 60.1 14 0.00048 38.0 6.5 70 49-131 166-236 (266)
70 3b2a_A TON_1937, putative unch 60.1 42 0.0014 34.7 9.9 79 301-384 30-109 (265)
71 4hxt_A De novo protein OR329; 58.8 82 0.0028 29.1 11.1 75 305-384 170-246 (252)
72 1wa5_B Importin alpha subunit; 58.5 15 0.00052 39.2 6.8 75 306-380 429-511 (530)
73 1xqr_A HSPBP1 protein; armadil 56.8 21 0.00073 36.5 7.3 75 51-132 210-288 (296)
74 2jdq_A Importin alpha-1 subuni 56.4 14 0.00048 37.7 5.9 73 50-131 318-390 (450)
75 4hxt_A De novo protein OR329; 56.0 23 0.00078 32.9 6.8 73 51-133 171-243 (252)
76 3zyl_A Phosphatidylinositol-bi 54.6 65 0.0022 33.0 10.4 72 284-360 42-115 (271)
77 1te4_A Conserved protein MTH18 52.6 16 0.00055 31.9 4.8 58 308-379 45-102 (131)
78 4db8_A Armadillo-repeat protei 51.8 25 0.00086 33.1 6.4 70 51-130 181-250 (252)
79 1b3u_A Protein (protein phosph 50.9 35 0.0012 36.0 8.0 69 304-378 401-469 (588)
80 3zym_A Phosphatidylinositol-bi 50.7 62 0.0021 33.8 9.7 72 284-360 42-115 (310)
81 1ibr_B P95, importin beta-1 su 48.2 37 0.0013 34.5 7.4 89 31-130 111-202 (462)
82 3eyy_A Putative iron uptake re 47.9 31 0.001 31.7 6.1 58 276-333 9-66 (145)
83 1oyz_A Hypothetical protein YI 47.7 53 0.0018 31.7 8.1 66 301-378 155-220 (280)
84 1qgr_A Protein (importin beta 47.6 48 0.0017 37.0 8.8 97 32-131 673-774 (876)
85 1xqr_A HSPBP1 protein; armadil 46.0 55 0.0019 33.5 8.3 72 51-132 168-239 (296)
86 1oyz_A Hypothetical protein YI 45.9 76 0.0026 30.6 8.9 61 303-379 190-250 (280)
87 3b2a_A TON_1937, putative unch 44.9 13 0.00045 38.4 3.4 65 55-129 194-259 (265)
88 4flb_A Regulation of nuclear P 43.9 66 0.0022 28.8 7.6 63 32-95 23-89 (132)
89 4db8_A Armadillo-repeat protei 39.6 93 0.0032 29.1 8.3 69 306-379 139-209 (252)
90 4fu3_A Regulation of nuclear P 39.1 97 0.0033 27.7 7.9 62 32-94 22-86 (135)
91 2vgl_B AP-2 complex subunit be 38.1 69 0.0024 35.3 8.1 75 46-133 117-191 (591)
92 3ul1_B Importin subunit alpha- 36.1 1E+02 0.0035 33.2 8.9 71 51-132 402-479 (510)
93 3grl_A General vesicular trans 33.8 57 0.0019 37.7 6.6 76 50-133 122-197 (651)
94 3zed_D Capsid protein VP3; vir 33.6 88 0.003 31.7 7.1 80 48-129 11-96 (242)
95 1hx8_A Synapse-enriched clathr 31.5 2E+02 0.0069 29.6 9.8 77 268-351 24-102 (299)
96 3lb6_A Interleukin-13, IL-13; 30.6 1.6E+02 0.0053 27.6 7.7 61 21-81 18-93 (132)
97 1u6g_C TIP120 protein, CAND1; 29.2 90 0.0031 37.2 7.6 73 303-379 131-204 (1230)
98 1mzb_A Ferric uptake regulatio 28.9 58 0.002 29.3 4.6 55 279-333 11-67 (136)
99 2fu4_A Ferric uptake regulatio 28.8 63 0.0022 26.1 4.5 54 279-332 10-65 (83)
100 2ii0_A SOS-1, SON of sevenless 28.4 2E+02 0.0067 31.6 9.6 70 14-87 48-147 (490)
101 2vgl_A Adaptor protein complex 27.5 87 0.003 35.1 6.7 89 31-132 502-590 (621)
102 1v54_E Cytochrome C oxidase po 26.9 2.7E+02 0.0092 25.4 8.4 49 278-326 35-89 (109)
103 2fe3_A Peroxide operon regulat 26.2 71 0.0024 29.1 4.8 58 276-333 12-70 (145)
104 3oc3_A Helicase MOT1, MOT1; re 26.1 1.5E+02 0.005 34.6 8.0 68 306-377 175-255 (800)
105 3n71_A Histone lysine methyltr 25.9 1.5E+02 0.0051 32.4 8.1 97 5-122 368-465 (490)
106 4fdd_A Transportin-1; heat rep 25.2 1.1E+02 0.0037 34.8 7.0 86 32-131 344-429 (852)
107 2kzs_A Death-associated protei 24.7 70 0.0024 28.3 4.1 52 32-97 16-67 (94)
108 3tpo_A Importin subunit alpha- 24.3 1.9E+02 0.0066 31.0 8.5 71 51-132 421-498 (529)
109 3ksy_A SOS-1, SON of sevenless 23.8 1.6E+02 0.0055 35.5 8.4 69 15-87 608-706 (1049)
110 1jdh_A Beta-catenin; beta-cate 23.6 1.6E+02 0.0055 30.6 7.5 65 307-377 462-528 (529)
111 2z6h_A Catenin beta-1, beta-ca 23.5 1.8E+02 0.0061 32.0 8.2 70 306-381 458-529 (644)
112 4ets_A Ferric uptake regulatio 23.1 68 0.0023 30.0 4.1 61 273-333 20-83 (162)
113 2vgl_A Adaptor protein complex 23.1 51 0.0017 37.0 3.7 69 304-380 520-590 (621)
114 1wq6_A AML1-ETO; NHR2, oncopro 22.5 2E+02 0.0067 24.4 6.1 56 26-94 12-67 (72)
115 1u6g_C TIP120 protein, CAND1; 22.4 3.8E+02 0.013 31.9 11.2 70 303-379 46-115 (1230)
116 2xig_A Ferric uptake regulatio 21.3 1.2E+02 0.004 27.9 5.3 61 273-333 14-75 (150)
117 2w57_A Ferric uptake regulatio 21.2 72 0.0025 29.3 3.8 56 278-333 9-66 (150)
No 1
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=100.00 E-value=5.3e-47 Score=357.52 Aligned_cols=136 Identities=79% Similarity=1.164 Sum_probs=131.2
Q ss_pred hhhHHHHHHHHHhhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCC
Q 005356 3 SSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSG 82 (700)
Q Consensus 3 ~~r~~v~~~~~~~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs 82 (700)
++|||||+|||.+||++||+|||||||||+|+|||++|+++++++|+|||+||++||+++++|||+||||||+|||.+|+
T Consensus 2 ~~~~~~~~~~~~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs 81 (140)
T 1vdy_A 2 SSGSSGESYWRSRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG 81 (140)
T ss_dssp CCCCSCTHHHHHHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999999999877889999999999999999999999999999999999
Q ss_pred hhhHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhcCCCCCCC
Q 005356 83 TDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEENKPAP 138 (700)
Q Consensus 83 ~~F~r~lrrns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~d~~~p~p 138 (700)
++|++|+|+|+++||+|++|+|+|||++|+++|++||++||||+++||+++..++|
T Consensus 82 ~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~~~~~ 137 (140)
T 1vdy_A 82 SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEENGSGP 137 (140)
T ss_dssp HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCCCCCC
Confidence 99999999999999999999999999999999999999999999999997765443
No 2
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=99.88 E-value=2.8e-23 Score=198.03 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=105.5
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCC----CchHHHHHHHHHHHHhcCChhhHHHHH
Q 005356 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKS----PVVKQKALRLIKYSVGKSGTDFRREMQ 90 (700)
Q Consensus 15 ~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks----~hVKlKaLKILkyLc~~Gs~~F~r~lr 90 (700)
.+|++||++|+|+|++.+|.|||+.||+.. .+.+||++|.+||.++. +|| +|||.||.||+.+||+.|+.|+|
T Consensus 14 ~kVreAT~nd~wGp~~~~m~eIa~~T~~~~--~~~eIm~~l~kRL~d~~~k~WR~v-yKaL~lLeyLl~nGse~vv~~~r 90 (150)
T 3onk_A 14 GKVREATNNEPWGASSTLMDQISQGTYNFR--EREEILSMIFRRFTEKAGSEWRQI-YKALQLLDYLIKHGSERFIDDTR 90 (150)
T ss_dssp HHHHHHTSSCSSCCCHHHHHHHHHHTTSHH--HHHHHHHHHHHHHHSCCSTTHHHH-HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHhCCHH--HHHHHHHHHHHHHcccccchHHHH-HHHHHHHHHHHHhCCHHHHHHHH
Confidence 789999999999999999999999999863 46899999999999763 566 99999999999999999999999
Q ss_pred HhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhcCC
Q 005356 91 RHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEE 133 (700)
Q Consensus 91 rns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~d~ 133 (700)
.|.++|++|++|++. |+ .|.+.+..||++|++|+++|-|++
T Consensus 91 ~~~~~i~~L~~F~~~-d~-~G~D~G~~VR~kak~l~~LL~D~e 131 (150)
T 3onk_A 91 NSINLIRILETFHYI-DS-QGRDQGINVRTRVKALIELLSDDN 131 (150)
T ss_dssp TTHHHHHGGGGCCCB-CT-TSCBCHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhhhccccc-CC-CCCchHHHHHHHHHHHHHHHcCHH
Confidence 999999999999998 44 799999999999999999999854
No 3
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=99.87 E-value=2.2e-22 Score=191.46 Aligned_cols=114 Identities=21% Similarity=0.273 Sum_probs=106.0
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCC---CchHHHHHHHHHHHHhcCChhhHHHHHH
Q 005356 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKS---PVVKQKALRLIKYSVGKSGTDFRREMQR 91 (700)
Q Consensus 15 ~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks---~hVKlKaLKILkyLc~~Gs~~F~r~lrr 91 (700)
.+|++||++|+|+|++.+|+|||++||+. ..+.+||++|.+||++++ +|| +|||.||.||+.+|++.|+.+++.
T Consensus 26 ~~VreAT~~d~wGP~~~~m~eIa~~T~~~--~~~~eIm~~l~kRL~d~~k~WR~v-yKaL~lleyLl~nGse~vv~~~r~ 102 (148)
T 1inz_A 26 IKVREATSNDPWGPSSSLMSEIADLTYNV--VAFSEIMSMIWKRLNDHGKNWRHV-YKAMTLMEYLIKTGSERVSQQCKE 102 (148)
T ss_dssp HHHHHHSCCCSCCCCSCHHHHHHHHHTSS--HHHHHHHHHHHHGGGCCSSCTHHH-HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHhCCH--hhHHHHHHHHHHHHccCCcchhHh-hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 78999999999999999999999999996 346899999999999864 566 999999999999999999999999
Q ss_pred hHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhcCC
Q 005356 92 HSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEE 133 (700)
Q Consensus 92 ns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~d~ 133 (700)
|.+.|++|++|++. |+ .|.+.+..||++|++|+++|-|++
T Consensus 103 ~~~~I~~L~~F~y~-d~-~g~D~G~nVR~kAk~l~~LL~D~e 142 (148)
T 1inz_A 103 NMYAVQTLKDFQYV-DR-DGKDQGVNVREKAKQLVALLRDED 142 (148)
T ss_dssp THHHHHHHHHCCCC-CS-SCCCCCHHHHHHHHHHHHHHTSCC
T ss_pred hHHHHHhhcceeee-CC-CCcCchHHHHHHHHHHHHHhCCHH
Confidence 99999999999997 44 888999999999999999999965
No 4
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=99.87 E-value=2.3e-22 Score=196.21 Aligned_cols=129 Identities=17% Similarity=0.196 Sum_probs=105.8
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhh-ccC--C-CchHHHHHHHHHHHHhcCChhhHHHHH
Q 005356 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRL-EHK--S-PVVKQKALRLIKYSVGKSGTDFRREMQ 90 (700)
Q Consensus 15 ~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL-~~k--s-~hVKlKaLKILkyLc~~Gs~~F~r~lr 90 (700)
.+|++||++|+|+|++.+|.|||+.||+.. .+.+||++|.+|| +++ . +|| +|||.||.||+.+|++.|+.|+|
T Consensus 37 ~kVreATnnd~wGPs~~~m~eIa~~T~~~~--~~~~Im~~L~kRl~~~~~k~WR~v-yKaL~LLeYLl~nGse~vv~~~r 113 (176)
T 1xgw_A 37 SKVREATNDDPWGPSGQLMGEIAKATFMYE--QFPELMNMLWSRMLKDNKKNWRRV-YKSLLLLAYLIRNGSERVVTSAR 113 (176)
T ss_dssp HHHHHHTCSCSSCCCHHHHHHHHHHTTCTT--THHHHHHHHHHHHHSSCTTCHHHH-HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHhcChh--hHHHHHHHHHHHHhccCCchhHHH-HHHHHHHHHHHHhCCHHHHHHHH
Confidence 689999999999999999999999999973 4689999999996 543 3 566 99999999999999999999999
Q ss_pred HhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhcCCC------CCCCCCCcccccCccccCC
Q 005356 91 RHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEEN------KPAPVEDLSLNKRIQGFGN 153 (700)
Q Consensus 91 rns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~d~~------~p~p~~g~g~~~riqGFGn 153 (700)
.|++.||+|++|++. |+ +|.+.+..||++|++|+++|.|++- ++.- ...++.|||+
T Consensus 114 ~~i~~I~~L~~F~y~-D~-~G~D~G~~VR~kAk~i~~LL~D~e~Lr~eR~ka~k-----~r~k~~G~~s 175 (176)
T 1xgw_A 114 EHIYDLRSLENYHFV-DE-HGKDQGINIRQKVKELVEFAQDDDRLREERKKAKK-----NKDKYVGVSS 175 (176)
T ss_dssp HTHHHHHGGGGCCCB-CT-TSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHC-----------------
T ss_pred HhHHHHHhhccCeeE-CC-CCCChHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----HHhhccCCCC
Confidence 999999999999996 65 8999999999999999999999653 1211 2367888885
No 5
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=99.87 E-value=2.2e-22 Score=190.69 Aligned_cols=114 Identities=21% Similarity=0.273 Sum_probs=105.7
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCC---CchHHHHHHHHHHHHhcCChhhHHHHHH
Q 005356 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKS---PVVKQKALRLIKYSVGKSGTDFRREMQR 91 (700)
Q Consensus 15 ~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks---~hVKlKaLKILkyLc~~Gs~~F~r~lrr 91 (700)
.+|++||++|+|+|++.+|+|||++||+. ..+.+||++|.+||.+++ +|| +|||.||.||+.+|++.|+.+++.
T Consensus 8 ~~VreAT~~d~wGP~~~~m~eIa~~T~~~--~~~~~Im~~l~kRL~d~~k~Wr~v-yKaL~lleyLl~nGse~vv~~~~~ 84 (144)
T 1eyh_A 8 IKVREATSNDPWGPSSSLMSEIADLTYNV--VAFSEIMSMIWKRLNDHGKNWRHV-YKAMTLMEYLIKTGSERVSQQCKE 84 (144)
T ss_dssp HHHHHHTCSSSSCCCHHHHHHHHHHTTSH--HHHHHHHHHHHHHHSCCGGGHHHH-HHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHhCCH--hhHHHHHHHHHHHHccCCcchHHH-hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 78999999999999999999999999986 346899999999999874 566 999999999999999999999999
Q ss_pred hHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhcCC
Q 005356 92 HSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFSEE 133 (700)
Q Consensus 92 ns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~d~ 133 (700)
|.+.|++|++|++. |+ .|.+.+..||++|++|+++|-|++
T Consensus 85 ~~~~i~~L~~F~y~-d~-~g~D~G~~VR~kak~l~~Ll~D~~ 124 (144)
T 1eyh_A 85 NMYAVQTLKDFQYV-DR-DGKDQGVNVREKAKQLVALLRDED 124 (144)
T ss_dssp THHHHHGGGGCCCB-CT-TSCBCHHHHHHHHHHHHHHHHCHH
T ss_pred hhHHHhhhccceee-CC-CccchHHHHHHHHHHHHHHHCCHH
Confidence 99999999999997 44 888999999999999999999853
No 6
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.67 E-value=3.2e-08 Score=103.98 Aligned_cols=127 Identities=16% Similarity=0.111 Sum_probs=104.1
Q ss_pred chhhHHHHHH-------HHHhhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHH
Q 005356 2 DSSRRAVESY-------WRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLI 74 (700)
Q Consensus 2 ~~~r~~v~~~-------~~~~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKIL 74 (700)
.+.+|+|.+- .-...|.|||+.+++||-.--+++|...|+++..+ +.+++..|.+||..++..|=+|+|-+|
T Consensus 11 ~~~~~~~~~~~~~~~~s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~-~~~i~~~L~~Rl~~~~w~vv~KaLivl 89 (310)
T 3zym_A 11 QSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVN-IPQLADSLFERTTNSSWVVVFKSLITT 89 (310)
T ss_dssp -CHHHHHHHHHHCCHHHHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSC-HHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcccccHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCc-HHHHHHHHHhhcCCCchHHHHHHHHHH
Confidence 3455555554 33578999999999999998899999999987654 479999999999988877779999999
Q ss_pred HHHHhcCChhhHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005356 75 KYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (700)
Q Consensus 75 kyLc~~Gs~~F~r~lrrns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~ 131 (700)
.+|++.|++.|+.+++++.. |-.|.+|.+... ..|.+....||..|+.|.+.+..
T Consensus 90 H~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~-~~g~~~~~~Ir~Ya~yL~~Rl~~ 144 (310)
T 3zym_A 90 HHLMVYGNERFIQYLASRNT-LFNLSNFLDKSG-LQGYDMSTFIRRYSRYLNEKAVS 144 (310)
T ss_dssp HHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHhCCC-eeecccccCCCC-cCcccccHHHHHHHHHHHHHHHH
Confidence 99999999999999998875 558888885322 24566778999999999988764
No 7
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=98.62 E-value=6e-08 Score=100.24 Aligned_cols=126 Identities=15% Similarity=0.116 Sum_probs=104.1
Q ss_pred chhhHHHHHHHH-------HhhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHH
Q 005356 2 DSSRRAVESYWR-------SRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLI 74 (700)
Q Consensus 2 ~~~r~~v~~~~~-------~~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKIL 74 (700)
.+.+|+|.+-++ ...|.|||+.+++||-.--+++|...|++++.+ +.+++..|.+||+.++..|=+|+|-+|
T Consensus 11 ~~~~~~~~~~~~~~~~s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~-~~~~~~~L~~Rl~~~~w~v~~KaLivl 89 (271)
T 3zyl_A 11 QSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVN-IPQLADSLFERTTNSSWVVVFKSLITT 89 (271)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSC-HHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcccchHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCc-HHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345555555533 468999999999999998999999999987654 479999999999988877779999999
Q ss_pred HHHHhcCChhhHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 005356 75 KYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130 (700)
Q Consensus 75 kyLc~~Gs~~F~r~lrrns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf 130 (700)
-+|++.|++.|.++++++.. |..|.+|++... ..|.+....||..|+-|.+-+.
T Consensus 90 H~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~-~~~~~~s~~Ir~Ya~yL~eRl~ 143 (271)
T 3zyl_A 90 HHLMVYGNERFIQYLASRNT-LFNLSNFLDKSG-LQGYDMSTFIRRYSRYLNEKAV 143 (271)
T ss_dssp HHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHhCCC-eechhccCCCCC-CCcccccHHHHHHHHHHHHHHH
Confidence 99999999999999998874 668888886432 2466677889999999999874
No 8
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=98.11 E-value=1.2e-05 Score=77.79 Aligned_cols=113 Identities=12% Similarity=0.189 Sum_probs=86.4
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHH
Q 005356 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSA 94 (700)
Q Consensus 15 ~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~ 94 (700)
.+|.+||+..-.-+---+.-|||.+...... ..++.+..|.|||+++.+||-+-||.||+.|+.++...|.+++... .
T Consensus 16 ~~IekATs~~l~~~Dw~~ileicD~I~~~~~-~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~-~ 93 (171)
T 1juq_A 16 SWLNKATNPSNRQEDWEYIIGFCDQINKELE-GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKF-R 93 (171)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-H
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHcCCc-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH-H
Confidence 7899999987655555567799999998864 5789999999999999999999999999999999999999888665 2
Q ss_pred HHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005356 95 VVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (700)
Q Consensus 95 ~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~ 131 (700)
++.++...-. .-..|......||+++-+++..--.
T Consensus 94 Fl~eL~kl~~--~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 94 FLNELIKVVS--PKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHC--CCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--cccCCCCCCHHHHHHHHHHHHHHHH
Confidence 2222222111 1112345567899999998887654
No 9
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=98.10 E-value=1.4e-05 Score=76.09 Aligned_cols=113 Identities=14% Similarity=0.199 Sum_probs=90.2
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHH
Q 005356 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSA 94 (700)
Q Consensus 15 ~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~ 94 (700)
.+|.+||+..-.-+---+.-|||.+....+ ...++.+..|.|||+++.|||-+-||.||+.|+.++...|.+++...-
T Consensus 14 ~~IekATs~~l~~~dw~~ileicD~I~~~~-~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~- 91 (149)
T 3g2s_A 14 ARINRATNPLNKELDWASINGFCEQLNEDF-EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFR- 91 (149)
T ss_dssp HHHHHHSCTTCSSCCHHHHHHHHHHGGGSS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHH-
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHCCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHH-
Confidence 789999999987777788999999999886 467899999999999999999999999999999999999998886544
Q ss_pred HHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005356 95 VVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (700)
Q Consensus 95 ~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~ 131 (700)
++.++...-. +++.|+.....||++..+++...-.
T Consensus 92 Fl~eL~kl~~--~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 92 FLNELIKVVS--PKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHC--TTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--ccccCCCCCHHHHHHHHHHHHHHHH
Confidence 3333332221 2233555667899999888876544
No 10
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=98.10 E-value=1.6e-05 Score=75.35 Aligned_cols=113 Identities=12% Similarity=0.159 Sum_probs=86.8
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHH
Q 005356 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSA 94 (700)
Q Consensus 15 ~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~ 94 (700)
.+|.+||+..-.-+---+.-|||.+....+ ...++.+..|.|||+++.|||-+-||.||+.|+.++...|.+++... .
T Consensus 4 ~~iekATs~~l~~~dw~~~leicD~I~~~~-~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~-~ 81 (148)
T 1mhq_A 4 LWLNKATDPSMSEQDWSAIQNFCEQVNTDP-NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKF-R 81 (148)
T ss_dssp HHHHHHHCTTCSSCCHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSH-H
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHcCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH-H
Confidence 689999997766555566779999999876 46789999999999999999999999999999999999999998654 4
Q ss_pred HHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005356 95 VVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (700)
Q Consensus 95 ~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~ 131 (700)
++.++...-. +...|......||+++-+++..--.
T Consensus 82 Fl~eL~kl~~--~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 82 FLNELIKVLS--PKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHTTC--CSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--cccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4444443221 1112334456799988888776544
No 11
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=98.08 E-value=1.2e-05 Score=77.21 Aligned_cols=105 Identities=21% Similarity=0.268 Sum_probs=81.6
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhH-
Q 005356 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHS- 93 (700)
Q Consensus 15 ~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns- 93 (700)
.+|.+||+..-.-+---+.-|||.+....+ ...++.+..|.|||+++.|||-+-||.||+.|+.++...|..++...-
T Consensus 18 ~~IekATs~~~~~~Dw~~~leicD~I~~~~-~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~F 96 (163)
T 1x5b_A 18 QDVEKATNEYNTTEDWSLIMDICDKVGSTP-NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDF 96 (163)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Confidence 889999998765555556679999999876 467899999999999999999999999999999999999997776432
Q ss_pred -H-HHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005356 94 -A-VVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (700)
Q Consensus 94 -~-~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~ 131 (700)
. ++|-+. ...| ..||+++.+++..--.
T Consensus 97 l~el~~l~~---~~~~--------~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 97 ATEVRAVIK---NKAH--------PKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHH---TTCC--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc---cCCC--------HHHHHHHHHHHHHHHH
Confidence 2 233332 1112 3699998888876654
No 12
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=98.04 E-value=2.6e-05 Score=73.10 Aligned_cols=105 Identities=22% Similarity=0.301 Sum_probs=82.6
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHH--HHh
Q 005356 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREM--QRH 92 (700)
Q Consensus 15 ~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~l--rrn 92 (700)
.+|.+||+..-.-.---+.-|||.+....+ ...++.+..|.|||+++.|||-+-||.||+.|+.++...|.+++ ++-
T Consensus 8 ~~iekAT~~~l~~~dw~~ileicD~I~~~~-~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~F 86 (140)
T 3ldz_A 8 QDVEKATSEMNTAEDWGLILDICDKVGQSR-TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDF 86 (140)
T ss_dssp HHHHHHTCTTSSSCCHHHHHHHHHHHTTST-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHCCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHH
Confidence 689999999876666677889999999876 45789999999999999999999999999999999999999877 333
Q ss_pred HHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005356 93 SAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (700)
Q Consensus 93 s~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~ 131 (700)
...++.+.. + ....||++..+++.....
T Consensus 87 l~el~~l~~-~----------~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 87 ASEVSNVLN-K----------GHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHH-H----------SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-c----------CCHHHHHHHHHHHHHHHH
Confidence 333322221 1 123688888888876543
No 13
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=98.02 E-value=7.1e-06 Score=85.59 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=92.6
Q ss_pred hhhHHHHHHHH-------HhhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHH
Q 005356 3 SSRRAVESYWR-------SRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIK 75 (700)
Q Consensus 3 ~~r~~v~~~~~-------~~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILk 75 (700)
+.||+|.+..+ ...|.|||+.+++||----+++|...|+++..+ +.+++..|.+|+..++..|=+|+|-+|-
T Consensus 7 ~~~~~~~a~k~~~~~~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~-~~~~~~~L~~R~~~~~w~va~K~LivlH 85 (299)
T 1hx8_A 7 TINDRLLAARHSLAGQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVS-IPHLANLLIERSQNANWVVVYKSLITTH 85 (299)
T ss_dssp ---------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSC-HHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCC-HHHHHHHHHhhccCCcHHHHHHHHHHHH
Confidence 45677666653 368999999999999998889999999987654 4689999999998888888899999999
Q ss_pred HHHhcCChhhHHHHHHhHHHHHHhhcccCCCC--------C--CCCchhhHHHHHHHHHHHHHhh
Q 005356 76 YSVGKSGTDFRREMQRHSAVVRQLFHYKGQLD--------P--LKGDALNKAVRDMAHEAISAIF 130 (700)
Q Consensus 76 yLc~~Gs~~F~r~lrrns~~IK~l~~F~GppD--------p--l~Gd~l~q~VR~~AkEll~aLf 130 (700)
+|++.|++.|..+++++. -|.++.+|+-... + ..|.+....||.-|+=|.+.+.
T Consensus 86 ~llreG~~~~~~~l~~~~-~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r~~ 149 (299)
T 1hx8_A 86 HLMAYGNERFMQYLASSN-STFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKSL 149 (299)
T ss_dssp HHHHHSCHHHHHHHHHTT-CCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHhCC-cccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 999999999999997753 2455566753211 1 1234567899999999999853
No 14
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=97.79 E-value=4.1e-05 Score=76.86 Aligned_cols=108 Identities=24% Similarity=0.283 Sum_probs=84.2
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHH
Q 005356 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSA 94 (700)
Q Consensus 15 ~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~ 94 (700)
.+|.+||+..-..+---+.-||+.+..... ...++.+..|.|||+++.|||-+-||+||+.|+.++...|.+++...-
T Consensus 11 ~~i~kAT~~~~~~~dw~~ileicD~I~~~~-~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~- 88 (226)
T 3zyq_A 11 RLLDKATSQLLLETDWESILQICDLIRQGD-TQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQ- 88 (226)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHH-
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHH-
Confidence 589999999887777778889999998875 356899999999999999999999999999999999999999886553
Q ss_pred HHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005356 95 VVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (700)
Q Consensus 95 ~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~ 131 (700)
++.++...-+ ......||+++-+++...-.
T Consensus 89 fl~~l~~l~~-------~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 89 TMEELKDLLK-------RQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-------cCCCHHHHHHHHHHHHHHHH
Confidence 2222221111 12235688888888876644
No 15
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=97.78 E-value=0.00011 Score=70.15 Aligned_cols=107 Identities=20% Similarity=0.223 Sum_probs=80.7
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhc-cCCCchHHHHHHHHHHHHhcCChhhHHHHHHhH
Q 005356 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLE-HKSPVVKQKALRLIKYSVGKSGTDFRREMQRHS 93 (700)
Q Consensus 15 ~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~-~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns 93 (700)
.+|.+||+..-.-+---+.-|||.+....+ ...++.+..|.|||+ ++.+||-+-||.||+.|+.++...|.+++...-
T Consensus 19 ~~IekATs~~l~~~Dw~~~leicD~I~~~~-~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~ 97 (157)
T 1elk_A 19 QRIEKATDGSLQSEDWALNMEICDIINETE-EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQD 97 (157)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCC-ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHH
Confidence 789999997765555556679999998876 467999999999998 478999999999999999999999999876532
Q ss_pred --H--HHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005356 94 --A--VVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (700)
Q Consensus 94 --~--~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~ 131 (700)
. .||-+. + +++ +...||+++-+++..--.
T Consensus 98 fl~e~Lvk~~~----~----k~~-~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 98 FVESVLVRTIL----P----KNN-PPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHTHHHHS----T----TTC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----c----CCC-CcHHHHHHHHHHHHHHHH
Confidence 1 233332 1 111 235688888888776543
No 16
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=97.77 E-value=4.4e-05 Score=76.00 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=82.5
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHH
Q 005356 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSA 94 (700)
Q Consensus 15 ~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~ 94 (700)
.+|.+||+..-.-+---+.-||+++....+. ..++.+..|.|||+++.|||-+-||.||+.|+.++...|..++...-
T Consensus 8 ~~ie~AT~~~~~~~dw~~~leicd~i~~~~~-~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~- 85 (220)
T 1dvp_A 8 KNLENATSHLRLEPDWPSILLICDEINQKDV-TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKE- 85 (220)
T ss_dssp HHHHHHHCTTCSSCCHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHH-
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHhhcCCCc-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHH-
Confidence 7899999977655555567889999988764 57899999999999999999999999999999999999988766543
Q ss_pred HHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005356 95 VVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (700)
Q Consensus 95 ~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~ 131 (700)
++.++...-. + .....||+++.|++...-.
T Consensus 86 fl~~l~~l~~--~-----~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 86 NCEMFSSFLE--S-----TPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHH--H-----CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--C-----CCcHHHHHHHHHHHHHHHH
Confidence 3333332221 1 1235688888888776554
No 17
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=97.69 E-value=0.0004 Score=65.82 Aligned_cols=107 Identities=17% Similarity=0.209 Sum_probs=83.3
Q ss_pred HHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh-cCHHHHHHHHHHHhCC--chhHHHHHHHHHHHHHHhccCchhHHHHH
Q 005356 269 EEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK-LDALAMSRALEAKLQS--PLWQVRMKAICVLESILRKKDDEKFSIIL 345 (700)
Q Consensus 269 E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~-Ld~e~V~elL~~kL~~--~~WQvrlRALcvLEaLl~s~~~d~~~~v~ 345 (700)
....|++ +|. .-..-|+...|++-++.+-. -++..|...|..+|.+ ..|.+-+|||.+||.|++.+.. .|.
T Consensus 6 ~E~~Vre-AT~-~d~wGP~~~~m~eIa~~T~~~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse----~vv 79 (144)
T 1eyh_A 6 AEIKVRE-ATS-NDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSE----RVS 79 (144)
T ss_dssp HHHHHHH-HTC-SSSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCH----HHH
T ss_pred HHHHHHH-HhC-CCCCCCCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCH----HHH
Confidence 3445666 565 33467888888888877644 3467899999999965 4899999999999999998763 567
Q ss_pred HHHHhhhHHHhhhhcCCC---------hhHHHHHHHHHHHhcccc
Q 005356 346 SYFCENNDVVVKCSESPQ---------SSLREKANKVLSLLGEEQ 381 (700)
Q Consensus 346 ~Yf~eN~~~L~r~~~s~q---------~~LReKA~KVL~lLg~~~ 381 (700)
..+++|...|..|.+-.- ..||+||+.|+.||.-+.
T Consensus 80 ~~~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D~~ 124 (144)
T 1eyh_A 80 QQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDED 124 (144)
T ss_dssp HHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHhhHHHhhhccceeeCCCccchHHHHHHHHHHHHHHHCCHH
Confidence 889999988888776321 268999999999997643
No 18
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=97.65 E-value=0.00058 Score=66.85 Aligned_cols=109 Identities=10% Similarity=0.142 Sum_probs=86.6
Q ss_pred hhHHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh-cCHHHHHHHHHHHh-C--CchhHHHHHHHHHHHHHHhccCchhHH
Q 005356 267 TREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK-LDALAMSRALEAKL-Q--SPLWQVRMKAICVLESILRKKDDEKFS 342 (700)
Q Consensus 267 ~~E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~-Ld~e~V~elL~~kL-~--~~~WQvrlRALcvLEaLl~s~~~d~~~ 342 (700)
+....+|++ +|..- -.-|+...|+.-.+.+-. -++..|...|.++| . ...|..-+|||.+||.||+.+. +
T Consensus 33 s~~E~kVre-ATnnd-~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGs----e 106 (176)
T 1xgw_A 33 SEIESKVRE-ATNDD-PWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGS----E 106 (176)
T ss_dssp CHHHHHHHH-HTCSC-SSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSC----H
T ss_pred CHHHHHHHH-HcCCC-CCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCC----H
Confidence 344555777 56543 467899999988887654 57799999999996 4 4789999999999999999886 3
Q ss_pred HHHHHHHhhhHHHhhhhcCCC---------hhHHHHHHHHHHHhcccc
Q 005356 343 IILSYFCENNDVVVKCSESPQ---------SSLREKANKVLSLLGEEQ 381 (700)
Q Consensus 343 ~v~~Yf~eN~~~L~r~~~s~q---------~~LReKA~KVL~lLg~~~ 381 (700)
.|.+.+++|...|+.|.+-.- ..||+||+.|+.||.-+.
T Consensus 107 ~vv~~~r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D~e 154 (176)
T 1xgw_A 107 RVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDD 154 (176)
T ss_dssp HHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCCHH
Confidence 667888999988888775522 359999999999998654
No 19
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=97.62 E-value=0.00032 Score=66.84 Aligned_cols=108 Identities=17% Similarity=0.217 Sum_probs=83.6
Q ss_pred HHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh-cCHHHHHHHHHHHhCC--chhHHHHHHHHHHHHHHhccCchhHHHHH
Q 005356 269 EEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK-LDALAMSRALEAKLQS--PLWQVRMKAICVLESILRKKDDEKFSIIL 345 (700)
Q Consensus 269 E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~-Ld~e~V~elL~~kL~~--~~WQvrlRALcvLEaLl~s~~~d~~~~v~ 345 (700)
-...|++ +|..- ..-|+...|++-++.+-. -++..|...|..+|.+ ..|.+-+|||.+||.|++.+.. .|.
T Consensus 24 ~E~~Vre-AT~~d-~wGP~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse----~vv 97 (148)
T 1inz_A 24 AEIKVRE-ATSND-PWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSE----RVS 97 (148)
T ss_dssp HHHHHHH-HSCCC-SCCCCSCHHHHHHHHHTSSHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCH----HHH
T ss_pred HHHHHHH-HhCCC-CCCcCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCH----HHH
Confidence 4455666 56533 456777888888877755 3467899999999965 5899999999999999998763 567
Q ss_pred HHHHhhhHHHhhhhcC--C--C-----hhHHHHHHHHHHHhccccc
Q 005356 346 SYFCENNDVVVKCSES--P--Q-----SSLREKANKVLSLLGEEQA 382 (700)
Q Consensus 346 ~Yf~eN~~~L~r~~~s--~--q-----~~LReKA~KVL~lLg~~~~ 382 (700)
..+++|...|+.|.+- . + ..||+||+.|+.||.-+..
T Consensus 98 ~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~D~e~ 143 (148)
T 1inz_A 98 QQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDR 143 (148)
T ss_dssp HHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHTSCCS
T ss_pred HHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhCCHHH
Confidence 8899999888887751 1 1 2689999999999987654
No 20
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=97.51 E-value=0.00077 Score=64.41 Aligned_cols=107 Identities=8% Similarity=0.145 Sum_probs=83.2
Q ss_pred HHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh-cCHHHHHHHHHHHhCC---chhHHHHHHHHHHHHHHhccCchhHHHH
Q 005356 269 EEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK-LDALAMSRALEAKLQS---PLWQVRMKAICVLESILRKKDDEKFSII 344 (700)
Q Consensus 269 E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~-Ld~e~V~elL~~kL~~---~~WQvrlRALcvLEaLl~s~~~d~~~~v 344 (700)
-...|++ +|. .-.--|+...|++-.+..-. -++..|.+.|..+|.+ ..|..-+|||.+||.|++.+.. .|
T Consensus 12 ~E~kVre-AT~-nd~wGp~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse----~v 85 (150)
T 3onk_A 12 MEGKVRE-ATN-NEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSE----RF 85 (150)
T ss_dssp HHHHHHH-HTS-SCSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCH----HH
T ss_pred HHHHHHH-HhC-CCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCH----HH
Confidence 4455666 565 44467888888888776543 3457899999999943 3799999999999999998863 56
Q ss_pred HHHHHhhhHHHhhhhcCCC---------hhHHHHHHHHHHHhcccc
Q 005356 345 LSYFCENNDVVVKCSESPQ---------SSLREKANKVLSLLGEEQ 381 (700)
Q Consensus 345 ~~Yf~eN~~~L~r~~~s~q---------~~LReKA~KVL~lLg~~~ 381 (700)
.+.+++|...|+.|.+-.- ..||+||+.|+.||.-+.
T Consensus 86 v~~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D~e 131 (150)
T 3onk_A 86 IDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDDN 131 (150)
T ss_dssp HHHHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHcCHH
Confidence 7889999999888776211 389999999999998654
No 21
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=97.44 E-value=0.00041 Score=65.60 Aligned_cols=109 Identities=16% Similarity=0.081 Sum_probs=81.9
Q ss_pred HHHHhhcCCcccCCCHHHHHHHHHHHhhc--C-HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHH
Q 005356 273 LETIVTYGGVRLQPTRDAIQVFLVEAAKL--D-ALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFC 349 (700)
Q Consensus 273 Ve~i~T~gGvr~~PSreeLq~Fl~~c~~L--d-~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~ 349 (700)
|.+ .|.--. --|+--.+++..+..-.- + +..|.+.|.+||.+..|-+++|||-+|+.|++.+.. .+.+..+
T Consensus 16 V~~-ATs~d~-~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~----~f~~~~r 89 (140)
T 1vdy_A 16 IDA-VTSDED-KVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS----EFRREMQ 89 (140)
T ss_dssp HHH-TTCSCS-SCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH----HHHHHHH
T ss_pred HHH-HhcCCC-CCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH----HHHHHHH
Confidence 555 454222 344455555555555443 2 589999999999999999999999999999988763 4578889
Q ss_pred hhhHHHhhhhcCC-----------ChhHHHHHHHHHHHhcccccCCccc
Q 005356 350 ENNDVVVKCSESP-----------QSSLREKANKVLSLLGEEQAGGLVS 387 (700)
Q Consensus 350 eN~~~L~r~~~s~-----------q~~LReKA~KVL~lLg~~~~~~~~~ 387 (700)
+|...|+.|.+-. -..||++|+.++.+|..+.....++
T Consensus 90 ~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~~~~~~ 138 (140)
T 1vdy_A 90 RNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEENGSGPS 138 (140)
T ss_dssp HTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSSCCCCC
T ss_pred HhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCCCCCCC
Confidence 9999999887431 1579999999999999888776543
No 22
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=97.23 E-value=0.00089 Score=63.87 Aligned_cols=110 Identities=17% Similarity=0.226 Sum_probs=84.1
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhcc-CCCchHHHHHHHHHHHHhcCChhhHHHHHHhH
Q 005356 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEH-KSPVVKQKALRLIKYSVGKSGTDFRREMQRHS 93 (700)
Q Consensus 15 ~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~-ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns 93 (700)
.+|.+||+..-..+--.+.-|||.+..... ...++.+..|.|||++ +.++|-+-||.||+.|+.++...|.+++...-
T Consensus 19 ~~IekATs~~l~~~Dw~~ileicD~In~~~-~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~ 97 (152)
T 3rru_A 19 HLIEKATFAGVQTEDWGQFMHICDIINTTQ-DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKE 97 (152)
T ss_dssp HHHHHHTCSSCCSCCHHHHHHHHHHHHHST-THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHH
T ss_pred HHHHHHcCCCCCCccHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhH
Confidence 689999999887777778899999999876 4679999999999995 46778788999999999999999999987543
Q ss_pred HHHHH-hhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005356 94 AVVRQ-LFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (700)
Q Consensus 94 ~~IK~-l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~ 131 (700)
++.+ +...-- ++ . .....||+++.+++...-.
T Consensus 98 -Fl~e~L~kl~~--~~--~-~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 98 -FVKENLVKLLN--PR--Y-NLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp -HHTTTTGGGGS--GG--G-CCCHHHHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHhc--CC--C-CCcHHHHHHHHHHHHHHHH
Confidence 2322 222111 11 0 1234799988888877655
No 23
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=95.97 E-value=0.1 Score=50.02 Aligned_cols=109 Identities=13% Similarity=0.072 Sum_probs=73.6
Q ss_pred HHHHHHhhcCCcccCCCHHHHHHHHHHHhhc--CHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHH-HH
Q 005356 271 KLLETIVTYGGVRLQPTRDAIQVFLVEAAKL--DALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIIL-SY 347 (700)
Q Consensus 271 ~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~L--d~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~-~Y 347 (700)
.+|+. +|. ..-..|--+.+-.++..++.- .+...+.+|.+||....-.++++||.+||.+++..+......|. .=
T Consensus 18 ~~Iek-ATs-~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~ 95 (163)
T 1x5b_A 18 QDVEK-ATN-EYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRD 95 (163)
T ss_dssp HHHHH-HTC-TTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHH
T ss_pred HHHHH-HcC-CCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 77887 444 223455555555555554442 45678899999998777779999999999999988765443333 22
Q ss_pred HHhhhHHHhhhh-cCCChhHHHHHHHHHHHhcccccCC
Q 005356 348 FCENNDVVVKCS-ESPQSSLREKANKVLSLLGEEQAGG 384 (700)
Q Consensus 348 f~eN~~~L~r~~-~s~q~~LReKA~KVL~lLg~~~~~~ 384 (700)
|. +.|.++. ...+..||+|+..++..|.......
T Consensus 96 Fl---~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 96 FA---TEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HH---HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HH---HHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33 2233333 3366799999999999999876643
No 24
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=95.31 E-value=0.2 Score=47.27 Aligned_cols=109 Identities=17% Similarity=0.097 Sum_probs=74.9
Q ss_pred HHHHHHhhcCCcccCCCHHHHHHHHHHHhhcC--HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHH-HH
Q 005356 271 KLLETIVTYGGVRLQPTRDAIQVFLVEAAKLD--ALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIIL-SY 347 (700)
Q Consensus 271 ~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~Ld--~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~-~Y 347 (700)
.+|+. +|. ..-..|--+-+-.++..++.-. +...+.+|..||++..-.++++||.+||++++..+......|. .=
T Consensus 4 ~~iek-ATs-~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~ 81 (148)
T 1mhq_A 4 LWLNK-ATD-PSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFR 81 (148)
T ss_dssp HHHHH-HHC-TTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHH
T ss_pred HHHHH-HcC-CCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 45666 343 2223555555555555555533 5778899999998888889999999999999998865443332 22
Q ss_pred HHhhhHHHhhhhc------CCChhHHHHHHHHHHHhcccccCC
Q 005356 348 FCENNDVVVKCSE------SPQSSLREKANKVLSLLGEEQAGG 384 (700)
Q Consensus 348 f~eN~~~L~r~~~------s~q~~LReKA~KVL~lLg~~~~~~ 384 (700)
|. +.|.++.. ..+..||+|+..++..|.......
T Consensus 82 Fl---~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 121 (148)
T 1mhq_A 82 FL---NELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPED 121 (148)
T ss_dssp HH---HHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HH---HHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 33 34555543 246889999999999998876543
No 25
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=95.10 E-value=0.15 Score=49.15 Aligned_cols=110 Identities=19% Similarity=0.129 Sum_probs=74.8
Q ss_pred HHHHHHHHhhcCCcccCCCHHHHHHHHHHHhhc--CHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHH-
Q 005356 269 EEKLLETIVTYGGVRLQPTRDAIQVFLVEAAKL--DALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIIL- 345 (700)
Q Consensus 269 E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~L--d~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~- 345 (700)
-..+|+. +|. ..-..|--..+..++..++.- .+...+.+|.+||.+..-.++++||.+||++++..+......|.
T Consensus 14 ~~~~Iek-ATs-~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas 91 (171)
T 1juq_A 14 LESWLNK-ATN-PSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGK 91 (171)
T ss_dssp HHHHHHH-HTC-TTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS
T ss_pred HHHHHHH-HcC-CCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh
Confidence 4567777 443 222345555555555554442 44678899999998888889999999999999987754432332
Q ss_pred HHHHhhhHHHhhhhc------CCChhHHHHHHHHHHHhcccccC
Q 005356 346 SYFCENNDVVVKCSE------SPQSSLREKANKVLSLLGEEQAG 383 (700)
Q Consensus 346 ~Yf~eN~~~L~r~~~------s~q~~LReKA~KVL~lLg~~~~~ 383 (700)
.=|. +.|.++.. ..+..||+|+..++..|......
T Consensus 92 ~~Fl---~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 92 FRFL---NELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HHHH---HHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHH---HHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 2233 44555553 34678999999999999987764
No 26
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.08 Score=52.92 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhhc----CHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHH-HhhhHHHhhhhcCC
Q 005356 288 RDAIQVFLVEAAKL----DALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYF-CENNDVVVKCSESP 362 (700)
Q Consensus 288 reeLq~Fl~~c~~L----d~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf-~eN~~~L~r~~~s~ 362 (700)
...|..|++.|... ..+.|++.|..-|+++.||+|.-+|..|..++.....- ...+..|+ .+-.+.|.+|....
T Consensus 125 ~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~-~~~l~~~l~~~iip~l~~~l~D~ 203 (249)
T 2qk1_A 125 RKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG-YSTLQRYLKDEVVPIVIQIVNDT 203 (249)
T ss_dssp HHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC-SHHHHHHHTTTHHHHHHHHHTCS
T ss_pred HHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHHHHHHhcCC
Confidence 45677777776321 14578888888898999999999999999999876431 02345688 88889999999999
Q ss_pred ChhHHHHHHHHHHHhc
Q 005356 363 QSSLREKANKVLSLLG 378 (700)
Q Consensus 363 q~~LReKA~KVL~lLg 378 (700)
...||++|...|..|.
T Consensus 204 ~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 204 QPAIRTIGFESFAILI 219 (249)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999887754
No 27
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=94.93 E-value=0.15 Score=47.63 Aligned_cols=110 Identities=12% Similarity=0.063 Sum_probs=74.0
Q ss_pred HHHHHHHhhcCCcccCCCHHHHHHHHHHHhhc--CHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHH-HH
Q 005356 270 EKLLETIVTYGGVRLQPTRDAIQVFLVEAAKL--DALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSII-LS 346 (700)
Q Consensus 270 ~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~L--d~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v-~~ 346 (700)
..+|+. +|. ..-..|--+-+-.+...+..- .+...+.+|.+||....-.++++||.+||++++..+......| ..
T Consensus 7 d~~iek-AT~-~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~ 84 (140)
T 3ldz_A 7 DQDVEK-ATS-EMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSR 84 (140)
T ss_dssp HHHHHH-HTC-TTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSH
T ss_pred HHHHHH-HcC-CCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhH
Confidence 356776 454 233455555555555555442 3577889999999877778999999999999998876544333 22
Q ss_pred HHHhhhHHHhhhhcCCChhHHHHHHHHHHHhcccccCC
Q 005356 347 YFCENNDVVVKCSESPQSSLREKANKVLSLLGEEQAGG 384 (700)
Q Consensus 347 Yf~eN~~~L~r~~~s~q~~LReKA~KVL~lLg~~~~~~ 384 (700)
=|. +.+.++....+..||+|...++..|.......
T Consensus 85 ~Fl---~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 85 DFA---SEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHH---HHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHH---HHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 233 23444444567899999999999998766543
No 28
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=94.93 E-value=0.27 Score=46.64 Aligned_cols=111 Identities=16% Similarity=0.118 Sum_probs=76.5
Q ss_pred hHHHHHHHHhhcCCcccCCCHHHHHHHHHHHhhcC--HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHH-
Q 005356 268 REEKLLETIVTYGGVRLQPTRDAIQVFLVEAAKLD--ALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSII- 344 (700)
Q Consensus 268 ~E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~Ld--~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v- 344 (700)
.-..+|+. +|. ..-..|--+-+-.|...+..-. +...+.+|..||.+..-.++++||.+||++++..+..+...|
T Consensus 11 ~~~~~Iek-ATs-~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eia 88 (149)
T 3g2s_A 11 TLEARINR-ATN-PLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVG 88 (149)
T ss_dssp CHHHHHHH-HSC-TTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHT
T ss_pred cHHHHHHH-HcC-CCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 34567777 444 2334455555555555554422 578889999999988888999999999999999886643322
Q ss_pred HHHHHhhhHHHhhhhc------CCChhHHHHHHHHHHHhcccccC
Q 005356 345 LSYFCENNDVVVKCSE------SPQSSLREKANKVLSLLGEEQAG 383 (700)
Q Consensus 345 ~~Yf~eN~~~L~r~~~------s~q~~LReKA~KVL~lLg~~~~~ 383 (700)
..=|. +.|.++.. ..+..||+|+..++..|......
T Consensus 89 s~~Fl---~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 89 KFRFL---NELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp SHHHH---HHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred hHHHH---HHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 33333 33555443 36789999999999999887654
No 29
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.88 E-value=0.18 Score=48.87 Aligned_cols=106 Identities=10% Similarity=0.077 Sum_probs=77.3
Q ss_pred HHHHHhhcCCcccCCCHHHHHHHHHHHhh-cCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHh
Q 005356 272 LLETIVTYGGVRLQPTRDAIQVFLVEAAK-LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCE 350 (700)
Q Consensus 272 LVe~i~T~gGvr~~PSreeLq~Fl~~c~~-Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~e 350 (700)
++..|+..-|-+...-|+....-+..|-. +..+.|++.|...|++..|++|..+|..|..++.....+. ....|+..
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~--~~~~~l~~ 176 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA--LNKKLLKL 176 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG--CCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC--ccHHHHHH
Confidence 44444444343333345555555555443 6678899999999999999999999999999987754332 12456777
Q ss_pred hhHHHhhhhcCCChhHHHHHHHHHHHhcc
Q 005356 351 NNDVVVKCSESPQSSLREKANKVLSLLGE 379 (700)
Q Consensus 351 N~~~L~r~~~s~q~~LReKA~KVL~lLg~ 379 (700)
-.+.|..|.+.....||+.|.+.|..|..
T Consensus 177 l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 177 LTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 77889999999999999999998887654
No 30
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=94.82 E-value=0.28 Score=46.55 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=73.6
Q ss_pred hHHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh--cCHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhccCchhHHHH
Q 005356 268 REEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQ-SPLWQVRMKAICVLESILRKKDDEKFSII 344 (700)
Q Consensus 268 ~E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~kL~-~~~WQvrlRALcvLEaLl~s~~~d~~~~v 344 (700)
.-..+|+. +|. ..-..|--+-+-++...++. -.+...+.+|.+||+ .++.+++++||.+||++++..+......|
T Consensus 16 ~~~~~Iek-ATs-~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~ev 93 (157)
T 1elk_A 16 PVGQRIEK-ATD-GSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLV 93 (157)
T ss_dssp HHHHHHHH-HTC-TTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHH-HcC-CCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 35567877 444 33345555555555555443 245788899999997 58889999999999999998876544323
Q ss_pred HH-HHHhhhHH-Hhhhh---cCCChhHHHHHHHHHHHhccccc
Q 005356 345 LS-YFCENNDV-VVKCS---ESPQSSLREKANKVLSLLGEEQA 382 (700)
Q Consensus 345 ~~-Yf~eN~~~-L~r~~---~s~q~~LReKA~KVL~lLg~~~~ 382 (700)
.+ =|. +. +.++. ..++..||+|+..++..|.....
T Consensus 94 a~~~fl---~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 94 ASQDFV---ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp TSHHHH---HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHH---HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 22 222 33 33433 23556899999999999988664
No 31
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=94.01 E-value=0.4 Score=47.44 Aligned_cols=109 Identities=20% Similarity=0.256 Sum_probs=73.3
Q ss_pred HHHHHHHhhcCCcccCCCHHHHHHHHHHHhh--cCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHH-H
Q 005356 270 EKLLETIVTYGGVRLQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIIL-S 346 (700)
Q Consensus 270 ~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~-~ 346 (700)
..+|+. +|. ..-..|--..+..+...++. -.+...+.+|..||....-.++++||.+||++++..+......|. .
T Consensus 7 ~~~ie~-AT~-~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~ 84 (220)
T 1dvp_A 7 CKNLEN-ATS-HLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTK 84 (220)
T ss_dssp HHHHHH-HHC-TTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSH
T ss_pred HHHHHH-HcC-CCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhH
Confidence 356777 444 23345555555555555543 356788889999998888889999999999999987654332222 2
Q ss_pred HHHhhhHHHhhh-hcCCChhHHHHHHHHHHHhcccccC
Q 005356 347 YFCENNDVVVKC-SESPQSSLREKANKVLSLLGEEQAG 383 (700)
Q Consensus 347 Yf~eN~~~L~r~-~~s~q~~LReKA~KVL~lLg~~~~~ 383 (700)
-|. +.|.++ .......||+|+..++..+......
T Consensus 85 ~fl---~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 85 ENC---EMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHH---HHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHH---HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 233 233333 2345678999999999999987654
No 32
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=93.92 E-value=0.62 Score=44.27 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=75.0
Q ss_pred hhHHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh--cCHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhccCchhHHH
Q 005356 267 TREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQ-SPLWQVRMKAICVLESILRKKDDEKFSI 343 (700)
Q Consensus 267 ~~E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~kL~-~~~WQvrlRALcvLEaLl~s~~~d~~~~ 343 (700)
+.-..+|+. +|. ..-..|--+-+-.+...+.. -.+...+.+|..||. .+.-.++++||.+||++++..+......
T Consensus 15 t~~~~~Iek-ATs-~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~e 92 (152)
T 3rru_A 15 TSVGHLIEK-ATF-AGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSL 92 (152)
T ss_dssp SHHHHHHHH-HTC-SSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ChHHHHHHH-HcC-CCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 456678887 454 23344555555555555443 335788899999997 4677899999999999999988765433
Q ss_pred HH-HHHHhhhHHHhhhhc---CCChhHHHHHHHHHHHhcccccCC
Q 005356 344 IL-SYFCENNDVVVKCSE---SPQSSLREKANKVLSLLGEEQAGG 384 (700)
Q Consensus 344 v~-~Yf~eN~~~L~r~~~---s~q~~LReKA~KVL~lLg~~~~~~ 384 (700)
|. .=|.+ +.|.++.. ..+..||+|+..++..|.....+.
T Consensus 93 iask~Fl~--e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~ 135 (152)
T 3rru_A 93 IVKKEFVK--ENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGG 135 (152)
T ss_dssp HSSHHHHT--TTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSS
T ss_pred HHhhHhHH--HHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 33 12221 12333332 234579999999999998877553
No 33
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=93.71 E-value=0.55 Score=46.98 Aligned_cols=109 Identities=14% Similarity=0.116 Sum_probs=77.6
Q ss_pred HHHHHHhhcCCcccCCCHHHHHHHHHHHhh--cCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHH-HHH
Q 005356 271 KLLETIVTYGGVRLQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSII-LSY 347 (700)
Q Consensus 271 ~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v-~~Y 347 (700)
.+|+. +|. ..-..|--+.+-.+...+.. -.+...+.+|.+||.+..-.++++||.+||++++..+......| ..=
T Consensus 11 ~~i~k-AT~-~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~ 88 (226)
T 3zyq_A 11 RLLDK-ATS-QLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQ 88 (226)
T ss_dssp HHHHH-HTC-TTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHH
T ss_pred HHHHH-HcC-CCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHH
Confidence 37777 454 33346666666666666665 45788999999999888888999999999999999886544332 233
Q ss_pred HHhhhHHHhh-hhcCCChhHHHHHHHHHHHhcccccCC
Q 005356 348 FCENNDVVVK-CSESPQSSLREKANKVLSLLGEEQAGG 384 (700)
Q Consensus 348 f~eN~~~L~r-~~~s~q~~LReKA~KVL~lLg~~~~~~ 384 (700)
|.+ .|.+ +....+..||+|+..++..|.......
T Consensus 89 fl~---~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 89 TME---ELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHH---HHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHH---HHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 332 2322 234567889999999999998876554
No 34
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.33 E-value=0.31 Score=47.15 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=67.7
Q ss_pred CCCCCCchhhHHHHHHHHHhcc---chhhHHHHHHHHHhhc-cCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHHHHHH
Q 005356 23 DEDKVTPVYKLEEICELLRSSH---VSIGKEVSDFILKRLE-HKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQ 98 (700)
Q Consensus 23 ddd~PtPGYl~~EIA~~t~~s~---~s~~~eI~dyLlkRL~-~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~~IK~ 98 (700)
+.+|-.=---+.+|..+....+ .....+|+.+|.++|. ++.+.|...|+++|..|+....+.|...+..-...|-+
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~ 105 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLE 105 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444333334455555554311 1123689999999995 88899999999999999987788887666555544444
Q ss_pred hhcccCCCCCCCCchhhHHHHHHHHHHHHHhhc
Q 005356 99 LFHYKGQLDPLKGDALNKAVRDMAHEAISAIFS 131 (700)
Q Consensus 99 l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf~ 131 (700)
+. + | ....||++|.+++..++.
T Consensus 106 ~l---~--d------~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 106 KF---K--E------KKPNVVTALREAIDAIYA 127 (242)
T ss_dssp GG---G--C------CCHHHHHHHHHHHHHHHT
T ss_pred HH---c--C------CCHHHHHHHHHHHHHHHH
Confidence 33 2 2 246799999999999987
No 35
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=88.41 E-value=2.6 Score=39.52 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHhh--cCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhh-HHHhhhhcCC
Q 005356 286 PTRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENN-DVVVKCSESP 362 (700)
Q Consensus 286 PSreeLq~Fl~~c~~--Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~-~~L~r~~~s~ 362 (700)
+|+..|+.-..-|.. -....|+++++++|...+=..++=+||+++++++..+. +| ..+|..+. +.+.......
T Consensus 22 nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~-~y---~~~F~~~l~~~f~~~~~~~ 97 (144)
T 1sz9_A 22 NSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGS-PY---TIYFSRNLFNLYKRTYLLV 97 (144)
T ss_dssp CCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCT-TH---HHHHHTTHHHHHHHHHHTS
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccc-hH---HHHHHHHHHHHHHHHHHhC
Confidence 677777766666655 24689999999999666667899999999999998764 34 46776665 4444555556
Q ss_pred ChhHHHHHHHHHHHhcccccCC
Q 005356 363 QSSLREKANKVLSLLGEEQAGG 384 (700)
Q Consensus 363 q~~LReKA~KVL~lLg~~~~~~ 384 (700)
....|.|-.|+++.+....+.+
T Consensus 98 d~~~r~k~~rL~~~W~~~~~~~ 119 (144)
T 1sz9_A 98 DNTTRTKLINMFKLWLNPNDTG 119 (144)
T ss_dssp CHHHHHHHHHHHHHHTSGGGCS
T ss_pred CHHHHHHHHHHHHHHhCcccCC
Confidence 7899999999999999876665
No 36
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=88.02 E-value=1 Score=44.80 Aligned_cols=73 Identities=19% Similarity=0.397 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCC---hhhHHHH-HHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHH
Q 005356 48 GKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSG---TDFRREM-QRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAH 123 (700)
Q Consensus 48 ~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs---~~F~r~l-rrns~~IK~l~~F~GppDpl~Gd~l~q~VR~~Ak 123 (700)
...+++.|..-|+++.+.||.=+|++|..++.... ..|...+ ..-+..+..|. .|. ...||++|.
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l-----~D~------~~~VR~aA~ 212 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV-----NDT------QPAIRTIGF 212 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH-----TCS------SHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHh-----cCC------CHHHHHHHH
Confidence 45899999999999999999999999999997765 5687777 77777777766 132 566999999
Q ss_pred HHHHHhhc
Q 005356 124 EAISAIFS 131 (700)
Q Consensus 124 Ell~aLf~ 131 (700)
|++..|..
T Consensus 213 ~~l~~i~~ 220 (249)
T 2qk1_A 213 ESFAILIK 220 (249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 37
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=87.50 E-value=2.4 Score=39.77 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=72.2
Q ss_pred CchhhHHHHHHHHHhhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhc
Q 005356 1 MDSSRRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGK 80 (700)
Q Consensus 1 ~~~~r~~v~~~~~~~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~ 80 (700)
|+++.+.++.|. ..|.+-|. ..+.....+..++.+.. +....|++.+.+++.+..|.-|+=+|=||+.+|++
T Consensus 2 ~~~~~~~~~~f~--~~L~~L~~-----nSk~~I~~LT~~a~~~~-~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN 73 (144)
T 1sz9_A 2 DHDTEVIVKDFN--SILEELTF-----NSRPIITTLTKLAEENI-SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKN 73 (144)
T ss_dssp CHHHHHHHHHHH--HHHTTCSS-----CCHHHHHHHHHHHHHTG-GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHH--HHHHHhcc-----ccHhHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHh
Confidence 477889999998 66666653 47788888888887764 56789999999999999999999999999999999
Q ss_pred CChhhHHHHHHhHH
Q 005356 81 SGTDFRREMQRHSA 94 (700)
Q Consensus 81 Gs~~F~r~lrrns~ 94 (700)
....|.....+++.
T Consensus 74 ~g~~y~~~F~~~l~ 87 (144)
T 1sz9_A 74 VGSPYTIYFSRNLF 87 (144)
T ss_dssp TCTTHHHHHHTTHH
T ss_pred ccchHHHHHHHHHH
Confidence 88889888888765
No 38
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=86.97 E-value=4.2 Score=36.80 Aligned_cols=106 Identities=9% Similarity=0.114 Sum_probs=69.1
Q ss_pred hhHHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh--cCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHH
Q 005356 267 TREEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSII 344 (700)
Q Consensus 267 ~~E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v 344 (700)
.-|..|.+.+-. +.++++.|+.-..-|-. -.++.|++++.++|...+=..|+-.|+++..+++......-..+
T Consensus 5 ~~e~~l~~~L~~-----L~~s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f 79 (132)
T 4flb_A 5 ALESSLDRKFQS-----VTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIF 79 (132)
T ss_dssp HHHHHHHHHHHH-----CCSSHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHH
T ss_pred HHHHHHHHHHHH-----CcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHH
Confidence 345555554333 45688888877777665 35689999999999544445799999999999986532211223
Q ss_pred HHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhcc
Q 005356 345 LSYFCENNDVVVKCSESPQSSLREKANKVLSLLGE 379 (700)
Q Consensus 345 ~~Yf~eN~~~L~r~~~s~q~~LReKA~KVL~lLg~ 379 (700)
...|...-..+...+ .....|.|..|||+.+..
T Consensus 80 ~~~f~~~l~~~~~~~--~~~~~~~kl~~ll~iW~~ 112 (132)
T 4flb_A 80 RESFADVLPEAAALV--KDPSVSKSVERIFKIWED 112 (132)
T ss_dssp HHHHHTTHHHHHHTT--CSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhcc
Confidence 444554443333222 235689999999998864
No 39
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=84.51 E-value=3.3 Score=37.04 Aligned_cols=67 Identities=9% Similarity=0.133 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHH---HHHHhhcccCCCCCCCCchhhHHHHHHHHH
Q 005356 48 GKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSA---VVRQLFHYKGQLDPLKGDALNKAVRDMAHE 124 (700)
Q Consensus 48 ~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~---~IK~l~~F~GppDpl~Gd~l~q~VR~~AkE 124 (700)
+.++-..|-.-|.-.++.| -|||.+|+-|-.-- -=..-|+||.. .||.|+.|.|. +.||+.|.+
T Consensus 8 l~~L~~~ik~~L~~~~~Dv-~kcl~~L~~l~~l~--~T~~mL~rnpe~V~t~kklRry~g~----------q~Ir~kA~~ 74 (98)
T 2b4j_C 8 LQRIHAEIKNSLKIDNLDV-NRCIEALDELASLQ--VTMQQAQKHTEMITTLKKIRRFKVS----------QVIMEKSTM 74 (98)
T ss_dssp HHHHHHHHHHHTCTTSCCH-HHHHHHHHHHHTCC--CCHHHHHTTHHHHHHHHHHTTCTTC----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCH-HHHHHHHHHHhccc--ccHHHHhhChHHHHHHHHHHHHhch----------HHHHHHHHH
Confidence 3466666777788778999 99999999885421 22456888887 67888888883 889999999
Q ss_pred HHH
Q 005356 125 AIS 127 (700)
Q Consensus 125 ll~ 127 (700)
+-+
T Consensus 75 iY~ 77 (98)
T 2b4j_C 75 LYN 77 (98)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 40
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=81.72 E-value=2.9 Score=41.50 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHHhc-CChh--hHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHH
Q 005356 49 KEVSDFILKRLEHKSPVVKQKALRLIKYSVGK-SGTD--FRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEA 125 (700)
Q Consensus 49 ~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~-Gs~~--F~r~lrrns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEl 125 (700)
..++++|..-|++|.|.|+.-+|.+|..++.. |... ....+..-...+..|. + | -+..||++|.++
T Consensus 138 ~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l---~--d------~~~~VR~aA~~l 206 (278)
T 4ffb_C 138 TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLA---G--H------GDRNVRSQTMNL 206 (278)
T ss_dssp HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHH---T--C------SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHH---h--C------CcHHHHHHHHHH
Confidence 57889999999999999999999999988764 4332 2223332223333333 2 1 235699999999
Q ss_pred HHHhhc
Q 005356 126 ISAIFS 131 (700)
Q Consensus 126 l~aLf~ 131 (700)
+-.||-
T Consensus 207 ~~~ly~ 212 (278)
T 4ffb_C 207 IVEIYK 212 (278)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999997
No 41
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=80.79 E-value=2.7 Score=38.02 Aligned_cols=107 Identities=9% Similarity=0.159 Sum_probs=61.7
Q ss_pred HHHHHHHHhhcCCcccCCCHHHHHHHHHHHhhcCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHH
Q 005356 269 EEKLLETIVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYF 348 (700)
Q Consensus 269 E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf 348 (700)
|..|.+.|-... ...++-..+..++-.... .++.|++++.++|...+=..|+-.||++..|++...... ..+...|
T Consensus 6 ~~~l~~~L~~L~--~s~~sI~~~s~w~l~~~~-~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~-~~y~~~f 81 (135)
T 4fu3_A 6 ESALEKKLSELS--NSQQSVQTLSLWLIHHRK-HAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKG-PEFTREF 81 (135)
T ss_dssp HHHHHHHHHHCC--SSTTHHHHHHHHHHHTGG-GHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTC-SHHHHHH
T ss_pred HHHHHHHHHHcc--ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcC-HHHHHHH
Confidence 555555544331 123444444444444443 578899999999943222468999999999986442111 1234556
Q ss_pred HhhhHHHhh-hhcCCChhHHHHHHHHHHHhcc
Q 005356 349 CENNDVVVK-CSESPQSSLREKANKVLSLLGE 379 (700)
Q Consensus 349 ~eN~~~L~r-~~~s~q~~LReKA~KVL~lLg~ 379 (700)
..+-..+.. .........|+|..|||+.+..
T Consensus 82 ~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~ 113 (135)
T 4fu3_A 82 ESVLVDAFSHVAREADEGCKKPLERLLNIWQE 113 (135)
T ss_dssp HTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Confidence 555433322 2112234578899999998874
No 42
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=79.36 E-value=12 Score=34.77 Aligned_cols=94 Identities=15% Similarity=0.109 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHhhc--CHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhH---HHHHHHHHhhhHHHhhhhc
Q 005356 286 PTRDAIQVFLVEAAKL--DALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKF---SIILSYFCENNDVVVKCSE 360 (700)
Q Consensus 286 PSreeLq~Fl~~c~~L--d~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~---~~v~~Yf~eN~~~L~r~~~ 360 (700)
-|+..|+....-|..- ....|++.+++++...+=..|+=+||++.+|++.-..... .....+|..+-..+...+-
T Consensus 21 ~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~ 100 (145)
T 3d9j_A 21 ISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLY 100 (145)
T ss_dssp CCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHH
Confidence 4777777777777652 4689999999999544445789999999999997653210 0235667666544333222
Q ss_pred CCChhHHHHHHHHHHHhcc
Q 005356 361 SPQSSLREKANKVLSLLGE 379 (700)
Q Consensus 361 s~q~~LReKA~KVL~lLg~ 379 (700)
......|.|..|||..+.-
T Consensus 101 ~~~~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 101 RCPGDDKSKIVRVLNLWQK 119 (145)
T ss_dssp SSCGGGHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhcC
Confidence 2337899999999999963
No 43
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=79.22 E-value=1.9 Score=42.76 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=47.5
Q ss_pred HHHHhCCchhHHHHHHHHHHHHHHhccCchhH-HHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHh
Q 005356 310 LEAKLQSPLWQVRMKAICVLESILRKKDDEKF-SIILSYFCENNDVVVKCSESPQSSLREKANKVLSLL 377 (700)
Q Consensus 310 L~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~-~~v~~Yf~eN~~~L~r~~~s~q~~LReKA~KVL~lL 377 (700)
|++||.+..|+.|+.||=.|..++.....+.. ..+...|.+....+.++.......+..+|-++|..|
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~ 82 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSL 82 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 67899999999999999888888876432211 112223455567777788888888888888887765
No 44
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=79.14 E-value=9.5 Score=39.25 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=68.4
Q ss_pred HHHHHHhhcCCcccCCCHHHHHHHHHHHhh-cCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHH
Q 005356 271 KLLETIVTYGGVRLQPTRDAIQVFLVEAAK-LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFC 349 (700)
Q Consensus 271 ~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~-Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~ 349 (700)
.+|-.++--.|---..-|+.++.-++.... .-...|...|.+.+.+++|++|.-+|-.|..++...+..+ .
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--------~ 203 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--------L 203 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--------G
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--------c
Confidence 334443333344222236666655554443 4557788999999999999999999999999998887642 2
Q ss_pred hhh---HHHhhhhcCCChhHHHHHHHHHH
Q 005356 350 ENN---DVVVKCSESPQSSLREKANKVLS 375 (700)
Q Consensus 350 eN~---~~L~r~~~s~q~~LReKA~KVL~ 375 (700)
.-- ..|.+|-+.+...||+.|...+-
T Consensus 204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 204 KSLSVEKTVAPFVGDKDVNVRNAAINVLV 232 (266)
T ss_dssp GGGCHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 234 77889999999999999976543
No 45
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=78.92 E-value=3 Score=42.73 Aligned_cols=75 Identities=13% Similarity=0.248 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhcccc
Q 005356 304 LAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGEEQ 381 (700)
Q Consensus 304 e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~~~L~r~~~s~q~~LReKA~KVL~lLg~~~ 381 (700)
..|+..|...|.++.|++|.-||.+|-+|......+.. ..+..+--..|.++..++...||..|-..|..+....
T Consensus 365 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~---~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL---KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTT---CTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHH---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 56778888888999999999999999999874332211 1222333366777778888999999999998887644
No 46
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=78.62 E-value=11 Score=36.27 Aligned_cols=92 Identities=10% Similarity=0.034 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHhh--cCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccC-------c------hhHHHHHHHHHhh
Q 005356 287 TRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKD-------D------EKFSIILSYFCEN 351 (700)
Q Consensus 287 SreeLq~Fl~~c~~--Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~-------~------d~~~~v~~Yf~eN 351 (700)
|+..|..-.+.|.. -....|++.|+..++..+-..++=+||||.++++.-. + .-|-.-...|.++
T Consensus 21 S~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~~~a~~gt~a~~v~~~~e~ 100 (157)
T 3clj_A 21 SGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSNSNSSSNKPGTCAHAINTLGEV 100 (157)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTCCC----STTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhcCCccCCCCccHHHHHHHHHHH
Confidence 78888888888776 2236799999999965444589999999999999821 1 1132112334555
Q ss_pred hHHHhh-hhcCCChhHHHHHHHHHHHhc
Q 005356 352 NDVVVK-CSESPQSSLREKANKVLSLLG 378 (700)
Q Consensus 352 ~~~L~r-~~~s~q~~LReKA~KVL~lLg 378 (700)
-+.+.. +.......-|+|-.|||.+|.
T Consensus 101 i~~l~~~~~~~~~~~~k~Ki~klldiW~ 128 (157)
T 3clj_A 101 IQELLSDAIAKSNQDHKEKIRMLLDIWD 128 (157)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 544422 222234678999999999998
No 47
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=77.37 E-value=21 Score=32.96 Aligned_cols=106 Identities=14% Similarity=0.227 Sum_probs=70.0
Q ss_pred HHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh--cCHHHHHHHHHHHhCCc--hhHHHHHHHHHHHHHHhccCchhHHHH
Q 005356 269 EEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQSP--LWQVRMKAICVLESILRKKDDEKFSII 344 (700)
Q Consensus 269 E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~kL~~~--~WQvrlRALcvLEaLl~s~~~d~~~~v 344 (700)
|..|.+.+-. +.++++.|+.-..-|-. -..+.|++++.+.|... +=.-|+-.|+++..+++...-..-..+
T Consensus 5 ~~~l~~kL~~-----L~~sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f 79 (142)
T 2km4_A 5 SEQFTTKLNT-----LEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQF 79 (142)
T ss_dssp HHHHHHHHHT-----CCSCHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHH
T ss_pred HHHHHHHHHh-----ccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHH
Confidence 5556555333 56789999987777765 45689999999999653 446789999999999975432110122
Q ss_pred HHHHHhhh-HHHhhhhcCCChhHHHHHHHHHHHhcc
Q 005356 345 LSYFCENN-DVVVKCSESPQSSLREKANKVLSLLGE 379 (700)
Q Consensus 345 ~~Yf~eN~-~~L~r~~~s~q~~LReKA~KVL~lLg~ 379 (700)
...|...- +.+...........|.|..|||+.++.
T Consensus 80 ~~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iWee 115 (142)
T 2km4_A 80 QDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKE 115 (142)
T ss_dssp HHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Confidence 33444443 333333333457799999999999864
No 48
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=76.82 E-value=9.7 Score=42.63 Aligned_cols=88 Identities=11% Similarity=0.182 Sum_probs=63.4
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHH
Q 005356 291 IQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKA 370 (700)
Q Consensus 291 Lq~Fl~~c~~Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~~~L~r~~~s~q~~LReKA 370 (700)
|..+.+.+...-...|+..|...|.++.|++|..|+.+|-.|......+ .+..|+.+--+.|..+...+...||..|
T Consensus 352 l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~l~~~l~d~~~~vr~~a 428 (876)
T 1qgr_A 352 LMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS---QLKPLVIQAMPTLIELMKDPSVVVRDTA 428 (876)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH---HHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3444444443335678888888888999999999999998888643322 2335555555677777788889999999
Q ss_pred HHHHHHhcccc
Q 005356 371 NKVLSLLGEEQ 381 (700)
Q Consensus 371 ~KVL~lLg~~~ 381 (700)
-.+|..|....
T Consensus 429 ~~~l~~~~~~~ 439 (876)
T 1qgr_A 429 AWTVGRICELL 439 (876)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99888877643
No 49
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=76.50 E-value=4.5 Score=37.78 Aligned_cols=71 Identities=10% Similarity=0.159 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHH---HHHHhhcccCCCCCCCCchhhHHHHHHHHH
Q 005356 48 GKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSA---VVRQLFHYKGQLDPLKGDALNKAVRDMAHE 124 (700)
Q Consensus 48 ~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~---~IK~l~~F~GppDpl~Gd~l~q~VR~~AkE 124 (700)
+.+|-..|-.-|.=.++.| -|||.+|+-|-.-- -=...|+||.. .||.|+.|.|. +.||+.|.+
T Consensus 8 L~~L~~~Ik~~L~v~~~Dv-~kCl~~Leel~~l~--vT~~mL~Rnpe~V~TlkklRrY~gn----------q~Ir~kA~~ 74 (127)
T 1z9e_A 8 LQRIHAEIKNSLKIDNLDV-NRCIEALDELASLQ--VTMQQAQKHTEMITTLKKIRRFKVS----------QVIMEKSTM 74 (127)
T ss_dssp HHHHHHHHHHHTCGGGCCH-HHHHHHHHHHHHSC--CCHHHHGGGHHHHHHHHHHTTCTTC----------SSHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCH-HHHHHHHHHHcccc--ccHHHHhhChHHHHHHHHHHHHhcc----------HHHHHHHHH
Confidence 3456666677777777899 89999999886421 12356888887 67788888884 669999999
Q ss_pred HHH---Hhhc
Q 005356 125 AIS---AIFS 131 (700)
Q Consensus 125 ll~---aLf~ 131 (700)
|-+ .||.
T Consensus 75 iY~kFK~lf~ 84 (127)
T 1z9e_A 75 LYNKFKNMFL 84 (127)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 864 5664
No 50
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=75.94 E-value=9.1 Score=40.50 Aligned_cols=84 Identities=12% Similarity=0.125 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHHHHHHhhcccCCCCCCCC
Q 005356 32 KLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKG 111 (700)
Q Consensus 32 l~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~~IK~l~~F~GppDpl~G 111 (700)
.+.+|++..-.. .++..++..|.+.|++..+.|+..+++.|..++..-..+|.. ..-...+..+ .. |+
T Consensus 503 ~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~~~p~l~~l---~~--d~--- 570 (588)
T 1b3u_A 503 CINVLSEVCGQD--ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ--SEVKPILEKL---TQ--DQ--- 570 (588)
T ss_dssp HHHHHHHHHHHH--HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH--HHHHHHHHHH---TT--CS---
T ss_pred HHHHHHHhcCHH--HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhH--HHHHHHHHHH---cC--CC---
Confidence 344455443222 245678999999999999999999999999999876666542 1112233333 21 32
Q ss_pred chhhHHHHHHHHHHHHHhh
Q 005356 112 DALNKAVRDMAHEAISAIF 130 (700)
Q Consensus 112 d~l~q~VR~~AkEll~aLf 130 (700)
...||..|.+++..|-
T Consensus 571 ---d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 571 ---DVDVKYFAQEALTVLS 586 (588)
T ss_dssp ---SHHHHHHHHHHHHHTT
T ss_pred ---chhHHHHHHHHHHHhh
Confidence 3469999999998874
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=74.74 E-value=8.5 Score=46.41 Aligned_cols=90 Identities=9% Similarity=0.141 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHH
Q 005356 289 DAIQVFLVEAAKLDALAMSRALEAKLQ-SPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLR 367 (700)
Q Consensus 289 eeLq~Fl~~c~~Ld~e~V~elL~~kL~-~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~~~L~r~~~s~q~~LR 367 (700)
..+..+++.+.---...|+..|...|. ...||.++-||-+|+.|.+.. . ..+..++-+-.+.|..|+-.-+.-|+
T Consensus 117 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~---~~~~~~~~~~~p~~~~~~~d~k~~v~ 192 (986)
T 2iw3_A 117 ETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-K---DQVALRMPELIPVLSETMWDTKKEVK 192 (986)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-H---HHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-H---HHHHHhccchhcchHhhcccCcHHHH
Confidence 445556665555555778888888884 458999999999999999854 1 34677888888999999999999999
Q ss_pred HHHHHHHHHhccccc
Q 005356 368 EKANKVLSLLGEEQA 382 (700)
Q Consensus 368 eKA~KVL~lLg~~~~ 382 (700)
..|.+.|..+..--.
T Consensus 193 ~~~~~~~~~~~~~~~ 207 (986)
T 2iw3_A 193 AAATAAMTKATETVD 207 (986)
T ss_dssp HHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999988876433
No 52
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=73.92 E-value=9.9 Score=42.46 Aligned_cols=81 Identities=14% Similarity=0.159 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHhhccCC--CchHHHHHHHHHHHHhcCChhhHHHHHHhHHHHHHhhcccCCCCCCCCch----hhHHHHH
Q 005356 47 IGKEVSDFILKRLEHKS--PVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDA----LNKAVRD 120 (700)
Q Consensus 47 ~~~eI~dyLlkRL~~ks--~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~~IK~l~~F~GppDpl~Gd~----l~q~VR~ 120 (700)
.+..|+..|.+.|++.. +.||..++++|..++.+..+.|...+..-...|..+....- ++ +|. ....||.
T Consensus 677 ~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~--~d~d~~~~~~~vr~ 752 (861)
T 2bpt_A 677 YSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP--EN--GTLEALDYQIKVLE 752 (861)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC--SS--SSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC--CC--CChHHHHHHHHHHH
Confidence 45688899999998765 88999999999999998888999888777776666555432 11 222 3357899
Q ss_pred HHHHHHHHhhc
Q 005356 121 MAHEAISAIFS 131 (700)
Q Consensus 121 ~AkEll~aLf~ 131 (700)
.+-+++..|..
T Consensus 753 ~~l~~~~~i~~ 763 (861)
T 2bpt_A 753 AVLDAYVGIVA 763 (861)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887764
No 53
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=71.85 E-value=6.6 Score=42.49 Aligned_cols=72 Identities=8% Similarity=0.055 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHhccCch-hHHHHHHHHHhhh--HHHhhhhcCCChhHHHHHHHHHHHh
Q 005356 306 MSRALEAKLQSPLWQVRMKAICVLESILRKKDDE-KFSIILSYFCENN--DVVVKCSESPQSSLREKANKVLSLL 377 (700)
Q Consensus 306 V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d-~~~~v~~Yf~eN~--~~L~r~~~s~q~~LReKA~KVL~lL 377 (700)
+++.|.+-|..+.++++..+|.+|+.|++..... ....+..+|.+.. +.|+.|..+....|++||.+||...
T Consensus 402 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 402 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3556666778889999999999999999854221 1234556676654 7888999999999999999999654
No 54
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=70.93 E-value=18 Score=40.47 Aligned_cols=87 Identities=13% Similarity=0.198 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHH
Q 005356 290 AIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREK 369 (700)
Q Consensus 290 eLq~Fl~~c~~Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~~~L~r~~~s~q~~LReK 369 (700)
.|..+...+...-...|.+.|.+.|.+..|++|..|+.+|..|......+ .+..|+..--..|.++...+...||..
T Consensus 354 ~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~---~~~~~l~~il~~l~~~l~d~~~~vr~~ 430 (861)
T 2bpt_A 354 CLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKV---QRTYYVHQALPSILNLMNDQSLQVKET 430 (861)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH---HHHHHHHHHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 34444444444445678888888888999999999999999998543312 234555544466666667778999999
Q ss_pred HHHHHHHhcc
Q 005356 370 ANKVLSLLGE 379 (700)
Q Consensus 370 A~KVL~lLg~ 379 (700)
|-.+|..|..
T Consensus 431 a~~~l~~l~~ 440 (861)
T 2bpt_A 431 TAWCIGRIAD 440 (861)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 55
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=68.70 E-value=13 Score=42.32 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHH
Q 005356 289 DAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLRE 368 (700)
Q Consensus 289 eeLq~Fl~~c~~Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~~~L~r~~~s~q~~LRe 368 (700)
..|..+.+.+...-...+...|.+.|.++.|++|.-|+.+|-.|...... .+..|+.+-...|.++...+...||.
T Consensus 343 ~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~----~~~~~l~~~l~~l~~~l~d~~~~Vr~ 418 (852)
T 4fdd_A 343 AALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ----GMIPYLPELIPHLIQCLSDKKALVRS 418 (852)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH----HHGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH----HHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 44555555555444567888898889999999999999999998875431 22234454557777888888999999
Q ss_pred HHHHHHHHhcc
Q 005356 369 KANKVLSLLGE 379 (700)
Q Consensus 369 KA~KVL~lLg~ 379 (700)
.|-..|..+..
T Consensus 419 ~a~~~l~~l~~ 429 (852)
T 4fdd_A 419 ITCWTLSRYAH 429 (852)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHHH
Confidence 99888877665
No 56
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=67.34 E-value=16 Score=33.51 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHH
Q 005356 49 KEVSDFILKRLEHKSPVVKQKALRLIKYSV 78 (700)
Q Consensus 49 ~eI~dyLlkRL~~ks~hVKlKaLKILkyLc 78 (700)
....+++++.|++.++.|+..|++.|..+.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~ 42 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG 42 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 467789999999999999999998887654
No 57
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=67.31 E-value=41 Score=31.27 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=63.3
Q ss_pred HHHHHHHHhhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCCh---
Q 005356 7 AVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGT--- 83 (700)
Q Consensus 7 ~v~~~~~~~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~--- 83 (700)
+|+.|- ..|..-+... .|.++-.+..|..++.+.. .....|++.+.+++.+..|.-|+=+|=|++-+|++...
T Consensus 3 ~v~~f~--~~L~~L~~~k-~~~S~~~I~~LT~~a~~~~-~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~ 78 (145)
T 3d9j_A 3 AVKTFN--SELYSLNDYK-PPISKAKMTQITKAAIKAI-KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFG 78 (145)
T ss_dssp HHHHHH--HHHHGGGGSC-SSCCHHHHHHHHHHHHHTG-GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH--HHHHHHHhcc-CCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcC
Confidence 455554 3333332222 4578899999999998764 45689999999999999999999999999999987655
Q ss_pred ----hhHHHHHHhHH
Q 005356 84 ----DFRREMQRHSA 94 (700)
Q Consensus 84 ----~F~r~lrrns~ 94 (700)
.|...+.+++.
T Consensus 79 ~~~~~f~~~F~~~L~ 93 (145)
T 3d9j_A 79 QEKDVFAPRFSNNII 93 (145)
T ss_dssp TTTCSHHHHHHHHHH
T ss_pred CccccHHHHHHHHHH
Confidence 68877776664
No 58
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=66.37 E-value=10 Score=33.07 Aligned_cols=76 Identities=17% Similarity=-0.000 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHhhcCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhH
Q 005356 287 TRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSL 366 (700)
Q Consensus 287 SreeLq~Fl~~c~~Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~~~L~r~~~s~q~~L 366 (700)
....-..=+.....+.....++.|...|.++.|.||..|+-+|..+... +. .+.|..+.......|
T Consensus 55 ~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~---~a-----------~~~L~~~l~d~~~~v 120 (131)
T 1te4_A 55 DWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE---RV-----------RAAMEKLAETGTGFA 120 (131)
T ss_dssp CHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH---HH-----------HHHHHHHTTSCCTHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH---HH-----------HHHHHHHHhCCCHHH
Confidence 3333334444555565556677788888889999999998877766421 11 133555555667789
Q ss_pred HHHHHHHHHH
Q 005356 367 REKANKVLSL 376 (700)
Q Consensus 367 ReKA~KVL~l 376 (700)
|..|...|..
T Consensus 121 r~~A~~aL~~ 130 (131)
T 1te4_A 121 RKVAVNYLET 130 (131)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHHHHh
Confidence 9998877654
No 59
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=66.12 E-value=6.3 Score=40.34 Aligned_cols=74 Identities=18% Similarity=0.089 Sum_probs=54.0
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchh------HHHHHHHHHhhh--HHHhhhhcCCChhHHHHHHHHHHH
Q 005356 305 AMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEK------FSIILSYFCENN--DVVVKCSESPQSSLREKANKVLSL 376 (700)
Q Consensus 305 ~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~------~~~v~~Yf~eN~--~~L~r~~~s~q~~LReKA~KVL~l 376 (700)
.+++.|.+-|.+..|.+|..|+.+|+.|+....... ...+...|.+.. +.|..+..++...+|++|..+|..
T Consensus 361 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 440 (450)
T 2jdq_A 361 GCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440 (450)
T ss_dssp TCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 356677777788899999999999999998553211 012344555443 667788888888999999999986
Q ss_pred hc
Q 005356 377 LG 378 (700)
Q Consensus 377 Lg 378 (700)
+=
T Consensus 441 ~~ 442 (450)
T 2jdq_A 441 YF 442 (450)
T ss_dssp HH
T ss_pred HC
Confidence 54
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=65.94 E-value=18 Score=33.15 Aligned_cols=26 Identities=23% Similarity=0.036 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHH
Q 005356 306 MSRALEAKLQSPLWQVRMKAICVLES 331 (700)
Q Consensus 306 V~elL~~kL~~~~WQvrlRALcvLEa 331 (700)
..+.|.+.|.++.|.+|..|+.+|..
T Consensus 46 ~~~~L~~~l~~~~~~vr~~a~~~L~~ 71 (201)
T 3ltj_A 46 AVEPLIKALKDEDAWVRRAAADALGQ 71 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 34444445555555566555544443
No 61
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=65.64 E-value=17 Score=38.79 Aligned_cols=71 Identities=11% Similarity=0.071 Sum_probs=50.6
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcCCh----------hhHHHHHHh--HHHHHHhhcccCCCCCCCCchhhHHH
Q 005356 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKSGT----------DFRREMQRH--SAVVRQLFHYKGQLDPLKGDALNKAV 118 (700)
Q Consensus 51 I~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~----------~F~r~lrrn--s~~IK~l~~F~GppDpl~Gd~l~q~V 118 (700)
+++.|..-|+...+.|+..||.+|..||..+.. .+...+.+. ...|..+.+ . .+..|
T Consensus 415 ~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~---~--------~~~~v 483 (528)
T 4b8j_A 415 CIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQS---H--------DNNEI 483 (528)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGG---C--------SSHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHc---C--------CCHHH
Confidence 567888889998899999999999999987644 234444333 233444432 1 13459
Q ss_pred HHHHHHHHHHhhcC
Q 005356 119 RDMAHEAISAIFSE 132 (700)
Q Consensus 119 R~~AkEll~aLf~d 132 (700)
|+.|..+++.+|++
T Consensus 484 ~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 484 YEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHCCC
Confidence 99999999999994
No 62
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=64.64 E-value=18 Score=33.46 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=23.9
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHHHHHH
Q 005356 50 EVSDFILKRLEHKSPVVKQKALRLIKYSV 78 (700)
Q Consensus 50 eI~dyLlkRL~~ks~hVKlKaLKILkyLc 78 (700)
+.++.|.+.|++.++.|+..|++.|..+.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~ 47 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIG 47 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 45688889999999999999988887653
No 63
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=63.47 E-value=12 Score=40.57 Aligned_cols=74 Identities=8% Similarity=0.055 Sum_probs=55.0
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHhccCch-hHHHHHHHHHhhh--HHHhhhhcCCChhHHHHHHHHHHH-hcc
Q 005356 306 MSRALEAKLQSPLWQVRMKAICVLESILRKKDDE-KFSIILSYFCENN--DVVVKCSESPQSSLREKANKVLSL-LGE 379 (700)
Q Consensus 306 V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d-~~~~v~~Yf~eN~--~~L~r~~~s~q~~LReKA~KVL~l-Lg~ 379 (700)
+++.|.+-|..+.++++..+|-+|+.|++..... ....+..+|.|.. +.|+.|..+....|++||.+||.. ++.
T Consensus 421 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 421 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 3556666778889999999999999999754221 1234456676654 888999999999999999999965 443
No 64
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=62.19 E-value=18 Score=33.15 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=50.3
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 005356 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130 (700)
Q Consensus 51 I~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf 130 (700)
+++.|.+-|++.++.|+..|+.+|..||.. ++..+..+.+. ..|..+...-... ...||..|-.++..|-
T Consensus 139 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~-g~i~~L~~ll~~~--------~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 139 ALPALVQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKEA-GALEKLEQLQSHE--------NEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-CHHHHHHHHHT-THHHHHHHGGGCS--------CHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CcHHHHHHHHC-CCHHHHHHHHhCC--------CHHHHHHHHHHHHHHh
Confidence 578899999998999999999999999984 45555555443 3444444333211 3459999999998774
Q ss_pred c
Q 005356 131 S 131 (700)
Q Consensus 131 ~ 131 (700)
+
T Consensus 209 ~ 209 (210)
T 4db6_A 209 S 209 (210)
T ss_dssp C
T ss_pred c
Confidence 3
No 65
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=62.18 E-value=16 Score=38.82 Aligned_cols=74 Identities=19% Similarity=0.191 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhH------HHHHHHHHhhh--HHHhhhhcCCChhHHHHHHHHHHHh
Q 005356 306 MSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKF------SIILSYFCENN--DVVVKCSESPQSSLREKANKVLSLL 377 (700)
Q Consensus 306 V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~------~~v~~Yf~eN~--~~L~r~~~s~q~~LReKA~KVL~lL 377 (700)
+++.|..-|..+.+.++..||.+|..|++....+.. ..+..++.+.. +.|..+..+....++++|.+||..+
T Consensus 415 ~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 415 CIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456667777788999999999999999986533210 12455665553 7788889999999999999999866
Q ss_pred cc
Q 005356 378 GE 379 (700)
Q Consensus 378 g~ 379 (700)
-.
T Consensus 495 ~~ 496 (528)
T 4b8j_A 495 WM 496 (528)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 66
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=61.45 E-value=32 Score=31.45 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhh--hHHHhhhhcCCChhHHHHHHHHHHHhc
Q 005356 305 AMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCEN--NDVVVKCSESPQSSLREKANKVLSLLG 378 (700)
Q Consensus 305 ~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN--~~~L~r~~~s~q~~LReKA~KVL~lLg 378 (700)
.+++.|.+-|+++...+|..|+.+|-.|...... . ...+.+. .+.|.++..+....+|++|..+|+.|.
T Consensus 138 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~-~----~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNE-Q----KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-H----HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH-H----HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 3566677777788899999999999999875321 1 2233333 277888888888999999999998875
No 67
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=60.94 E-value=19 Score=38.50 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=51.0
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcCCh----------hhHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHH
Q 005356 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKSGT----------DFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRD 120 (700)
Q Consensus 51 I~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~----------~F~r~lrrns~~IK~l~~F~GppDpl~Gd~l~q~VR~ 120 (700)
+++.|..-|++..+.|+..||..|..|+..+.. .+...+.+. ..+..+...... .+..||+
T Consensus 429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~L~~L~~~--------~~~~v~~ 499 (530)
T 1wa5_B 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKA-GGMEKIFNCQQN--------ENDKIYE 499 (530)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHT-THHHHHHGGGGC--------SCHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHc-CcHHHHHHHHcC--------CCHHHHH
Confidence 667888888888899999999999999986643 234433332 233344433321 2355999
Q ss_pred HHHHHHHHhhcC
Q 005356 121 MAHEAISAIFSE 132 (700)
Q Consensus 121 ~AkEll~aLf~d 132 (700)
.|..+++.+|.+
T Consensus 500 ~a~~il~~~~~~ 511 (530)
T 1wa5_B 500 KAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHSSS
T ss_pred HHHHHHHHHCCc
Confidence 999999999983
No 68
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=60.20 E-value=26 Score=32.39 Aligned_cols=29 Identities=24% Similarity=0.039 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 005356 304 LAMSRALEAKLQSPLWQVRMKAICVLESI 332 (700)
Q Consensus 304 e~V~elL~~kL~~~~WQvrlRALcvLEaL 332 (700)
......|.+.|.++.|.+|..|+.+|-.+
T Consensus 49 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~ 77 (211)
T 3ltm_A 49 ERAVEPLIKALKDEDAWVRRAAADALGQI 77 (211)
T ss_dssp GGGHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 34445555555556666666655554443
No 69
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=60.15 E-value=14 Score=38.01 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHHHh-cCChhhHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHH
Q 005356 49 KEVSDFILKRLEHKSPVVKQKALRLIKYSVG-KSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAIS 127 (700)
Q Consensus 49 ~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~-~Gs~~F~r~lrrns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~ 127 (700)
..|.+||.+-+++|+..++.-||.+|-+|+. +|-. + ++....-+.+...-+.+ ...||++|-.++.
T Consensus 166 ~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-~----~~~l~~~~~ia~ll~D~--------d~~VR~aAl~~lv 232 (266)
T 2of3_A 166 LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-P----LKSLSVEKTVAPFVGDK--------DVNVRNAAINVLV 232 (266)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-G----GGGGCHHHHHGGGGGCS--------SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-c----cccccchHHHHHHHcCC--------CHHHHHHHHHHHH
Confidence 3577777777777777777777777777774 4544 1 12210014444444422 3469999999999
Q ss_pred Hhhc
Q 005356 128 AIFS 131 (700)
Q Consensus 128 aLf~ 131 (700)
.+|.
T Consensus 233 e~y~ 236 (266)
T 2of3_A 233 ACFK 236 (266)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9997
No 70
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=60.08 E-value=42 Score=34.74 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=56.1
Q ss_pred cCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchh-HHHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhcc
Q 005356 301 LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEK-FSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGE 379 (700)
Q Consensus 301 Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~-~~~v~~Yf~eN~~~L~r~~~s~q~~LReKA~KVL~lLg~ 379 (700)
.+.+ .+.+|..=|.+..-.++.|||.+||-+++.....- -..+ .+--+.+.++.-+....+.=+|-|+|+.|=.
T Consensus 30 ~~e~-~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~----e~~Ld~iI~llk~~dEkval~A~r~L~~LLe 104 (265)
T 3b2a_A 30 EDKR-ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL----ERHLDVFINALSQENEKVTIKALRALGYLVK 104 (265)
T ss_dssp HCHH-HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH----HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHT
T ss_pred hchh-HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH----HHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 3444 66677767788899999999999999999853221 1122 2333667777777788899999999998866
Q ss_pred cccCC
Q 005356 380 EQAGG 384 (700)
Q Consensus 380 ~~~~~ 384 (700)
..+-+
T Consensus 105 ~vpL~ 109 (265)
T 3b2a_A 105 DVPMG 109 (265)
T ss_dssp TCCBC
T ss_pred CCCCC
Confidence 55444
No 71
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=58.80 E-value=82 Score=29.06 Aligned_cols=75 Identities=17% Similarity=0.107 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhh--hHHHhhhhcCCChhHHHHHHHHHHHhccccc
Q 005356 305 AMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCEN--NDVVVKCSESPQSSLREKANKVLSLLGEEQA 382 (700)
Q Consensus 305 ~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN--~~~L~r~~~s~q~~LReKA~KVL~lLg~~~~ 382 (700)
.+++.|..-|.++.+.+|..|+.+|..|..... . ..+++.+. .+.|.++..+....+|+.|-.+|..|....+
T Consensus 170 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~---~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 170 GGVEVLVKLLTSTDSEVQKEAARALANIASGPT--S---AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH--H---HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH--H---HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 356777777788889999999999999987321 1 12233222 2777788888889999999999999977554
Q ss_pred CC
Q 005356 383 GG 384 (700)
Q Consensus 383 ~~ 384 (700)
..
T Consensus 245 ~~ 246 (252)
T 4hxt_A 245 LE 246 (252)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 72
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=58.48 E-value=15 Score=39.24 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchh------HHHHHHHHHhh--hHHHhhhhcCCChhHHHHHHHHHHHh
Q 005356 306 MSRALEAKLQSPLWQVRMKAICVLESILRKKDDEK------FSIILSYFCEN--NDVVVKCSESPQSSLREKANKVLSLL 377 (700)
Q Consensus 306 V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~------~~~v~~Yf~eN--~~~L~r~~~s~q~~LReKA~KVL~lL 377 (700)
+++.|..-|.+..+.++..|+.+|+.|+.....+. ...+..+|.+. .+.|+.+..++...|+++|..+|..+
T Consensus 429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56667777778899999999999999998653211 01234556555 37888899999999999999999865
Q ss_pred ccc
Q 005356 378 GEE 380 (700)
Q Consensus 378 g~~ 380 (700)
-..
T Consensus 509 ~~~ 511 (530)
T 1wa5_B 509 FGE 511 (530)
T ss_dssp SSS
T ss_pred CCc
Confidence 543
No 73
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=56.78 E-value=21 Score=36.54 Aligned_cols=75 Identities=11% Similarity=0.118 Sum_probs=51.3
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHh----HHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHH
Q 005356 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRH----SAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAI 126 (700)
Q Consensus 51 I~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrn----s~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll 126 (700)
++..|.+-|.++++.|+.+||+.|..|+.. .+..+..++.. ...|+++.+- +.+..=|+.+++.|.+|+
T Consensus 210 ~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~-~~~~~~~~~~~~~~l~~lL~~~~~~------lq~~e~~~e~~~~~~~il 282 (296)
T 1xqr_A 210 MVQQLVALVRTEHSPFHEHVLGALCSLVTD-FPQGVRECREPELGLEELLRHRCQL------LQQHEEYQEELEFCEKLL 282 (296)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTT-CHHHHHHHHCGGGCHHHHHHHHHHH------HTTCGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCChhHHHHHHHHHHHHHhC-ChhHHHHHhccHHHHHHHHHHHHHH------ccchHHHHHHHHHHHHHH
Confidence 567788889999999999999999999875 44444443321 2334333211 122234688999999999
Q ss_pred HHhhcC
Q 005356 127 SAIFSE 132 (700)
Q Consensus 127 ~aLf~d 132 (700)
+..|++
T Consensus 283 ~~~f~~ 288 (296)
T 1xqr_A 283 QTCFSS 288 (296)
T ss_dssp HHHCC-
T ss_pred HHHcCC
Confidence 999984
No 74
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=56.42 E-value=14 Score=37.72 Aligned_cols=73 Identities=10% Similarity=0.151 Sum_probs=53.2
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHh
Q 005356 50 EVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAI 129 (700)
Q Consensus 50 eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aL 129 (700)
.++..|.+.|++..+.|+..|+.+|-.|+..++++.++.+.+ ..+|..+...-...| ..||..|-+++..|
T Consensus 318 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~--------~~v~~~a~~aL~~l 388 (450)
T 2jdq_A 318 NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVE-LGCIKPLCDLLTVMD--------SKIVQVALNGLENI 388 (450)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HTCHHHHHHGGGSSC--------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH-CCCHHHHHHHhcCCC--------HHHHHHHHHHHHHH
Confidence 467789999999999999999999999999887776666552 334554444432222 35888888888877
Q ss_pred hc
Q 005356 130 FS 131 (700)
Q Consensus 130 f~ 131 (700)
..
T Consensus 389 ~~ 390 (450)
T 2jdq_A 389 LR 390 (450)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 75
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=56.01 E-value=23 Score=32.88 Aligned_cols=73 Identities=19% Similarity=0.168 Sum_probs=54.5
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 005356 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130 (700)
Q Consensus 51 I~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf 130 (700)
+++.|.+-|.+.++.|+..|+++|..||. +++..+..+.+ ...|..+..+-...| ..||..|-.++..|.
T Consensus 171 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~-~~~i~~L~~ll~~~~--------~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 171 GVEVLVKLLTSTDSEVQKEAARALANIAS-GPTSAIKAIVD-AGGVEVLQKLLTSTD--------SEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTT-SBHHHHHHHHH-TTHHHHHHHGGGCSC--------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHH-CCCHHHHHHHHCCCc--------HHHHHHHHHHHHHHH
Confidence 77889999999889999999999999997 56666665554 345555555443222 259999999999998
Q ss_pred cCC
Q 005356 131 SEE 133 (700)
Q Consensus 131 ~d~ 133 (700)
...
T Consensus 241 ~~~ 243 (252)
T 4hxt_A 241 SGG 243 (252)
T ss_dssp HTC
T ss_pred cCC
Confidence 744
No 76
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=54.59 E-value=65 Score=33.04 Aligned_cols=72 Identities=11% Similarity=0.320 Sum_probs=53.0
Q ss_pred cCCCHHHHHHHHHHHhh--cCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhc
Q 005356 284 LQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSE 360 (700)
Q Consensus 284 ~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~~~L~r~~~ 360 (700)
..|.+.-++.-+..... -....+...|..||+...|.|-+|+|.+|-.|++.+.. .+.+|...|.. +..+..
T Consensus 42 ~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~~~~w~v~~KaLivlH~llreG~~----~~l~~~~~~~~-~~~Ls~ 115 (271)
T 3zyl_A 42 MGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNE----RFIQYLASRNT-LFNLSN 115 (271)
T ss_dssp SCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCH----HHHHHHHHCSC-CCCCTT
T ss_pred CCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhcCCH----HHHHHHHhCCC-eechhc
Confidence 56666666665554443 34579999999999999999999999999999998763 35667766653 444443
No 77
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=52.63 E-value=16 Score=31.85 Aligned_cols=58 Identities=19% Similarity=0.321 Sum_probs=40.8
Q ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhcc
Q 005356 308 RALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGE 379 (700)
Q Consensus 308 elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~~~L~r~~~s~q~~LReKA~KVL~lLg~ 379 (700)
+.|...|.++.|.||..|+.+|..+.. .+. .+.|.++...+...||..|-..|..++.
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~---~~a-----------~~~L~~~L~d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQD---ERA-----------VEPLIKLLEDDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCS---HHH-----------HHHHHHHHHHCCTHHHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCC---HHH-----------HHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 566667778999999998877765532 111 1334444456778899999999998873
No 78
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=51.76 E-value=25 Score=33.07 Aligned_cols=70 Identities=13% Similarity=0.226 Sum_probs=50.2
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 005356 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130 (700)
Q Consensus 51 I~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf 130 (700)
+++.|.+-|++.++.|+..|+.+|..||. +++..+..+.+. .+|..+...-...|+ .||..|-.++..|.
T Consensus 181 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-g~i~~L~~ll~~~~~--------~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 181 ALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQKQAVKEA-GALEKLEQLQSHENE--------KIQKEAQEALEKLQ 250 (252)
T ss_dssp CHHHHHHGGGCSSHHHHHHHHHHHHHHTT-SCHHHHHHHHHT-THHHHHHTTTTCSSS--------HHHHTHHHHHHTTC
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHC-CcHHHHHHHhCCCCH--------HHHHHHHHHHHHHh
Confidence 46789999999889999999999999996 455555555433 455555554433222 59999988887765
No 79
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=50.89 E-value=35 Score=35.98 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhc
Q 005356 304 LAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLG 378 (700)
Q Consensus 304 e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~~~L~r~~~s~q~~LReKA~KVL~lLg 378 (700)
..++..|..-+.++.|.+|..++.+|..|.+.-+.+.+. +++ .+.+.++.......||+.|-+.|..|.
T Consensus 401 ~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l---~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 469 (588)
T 1b3u_A 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFD---EKL---NSLCMAWLVDHVYAIREAATSNLKKLV 469 (588)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCC---HHH---HHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHH---HHH---HHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 456667777778999999999999999888765443221 111 134445555666789998888776654
No 80
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=50.65 E-value=62 Score=33.78 Aligned_cols=72 Identities=11% Similarity=0.320 Sum_probs=52.9
Q ss_pred cCCCHHHHHHHHHHHhh--cCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhc
Q 005356 284 LQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSE 360 (700)
Q Consensus 284 ~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~~~L~r~~~ 360 (700)
..|.+.-++.-+..... -....+...|..||+...|.|-+|+|.+|-.|++.+.. .+.+|+.+|.. +..|..
T Consensus 42 ~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~~~~w~vv~KaLivlH~llreG~~----~~l~~~~~~~~-~~~Ls~ 115 (310)
T 3zym_A 42 MGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNE----RFIQYLASRNT-LFNLSN 115 (310)
T ss_dssp SCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCH----HHHHHHHHCSC-CCCCTT
T ss_pred CCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhcCCH----HHHHHHHhCCC-eeeccc
Confidence 56666666665554443 24578999999999999999999999999999998762 45677776653 334444
No 81
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=48.17 E-value=37 Score=34.53 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHhccchhhHHHHHHHHHhhccC--CCchHHHHHHHHHHHHhcCChhhHHHHHHhHH-HHHHhhcccCCCC
Q 005356 31 YKLEEICELLRSSHVSIGKEVSDFILKRLEHK--SPVVKQKALRLIKYSVGKSGTDFRREMQRHSA-VVRQLFHYKGQLD 107 (700)
Q Consensus 31 Yl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~k--s~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~-~IK~l~~F~GppD 107 (700)
..+.+|+...+. ...+.+++..|...+++. ++.++.-+|++|.+||..-.+.+ +..+.. ++..+..+-. |
T Consensus 111 ~~i~~ia~~~~~--~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~---~~~~~~~ll~~l~~~l~--~ 183 (462)
T 1ibr_B 111 QCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ---LQDKSNEILTAIIQGMR--K 183 (462)
T ss_dssp HHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGG---TGGGHHHHHHHHHHHHS--T
T ss_pred HHHHHHHHHhcc--ccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchh---hHhHHHHHHHHHHHHhC--C
Confidence 345555555432 123568999999999988 88999999999999998653332 122222 3333332222 2
Q ss_pred CCCCchhhHHHHHHHHHHHHHhh
Q 005356 108 PLKGDALNKAVRDMAHEAISAIF 130 (700)
Q Consensus 108 pl~Gd~l~q~VR~~AkEll~aLf 130 (700)
+ .....||.+|-+++..+.
T Consensus 184 ~----~~~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 184 E----EPSNNVKLAATNALLNSL 202 (462)
T ss_dssp T----CCCHHHHHHHHHHHHHHT
T ss_pred C----CCCHHHHHHHHHHHHHHH
Confidence 1 124569998877776653
No 82
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=47.93 E-value=31 Score=31.71 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=47.6
Q ss_pred HhhcCCcccCCCHHHHHHHHHHHhhcCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 005356 276 IVTYGGVRLQPTRDAIQVFLVEAAKLDALAMSRALEAKLQSPLWQVRMKAICVLESIL 333 (700)
Q Consensus 276 i~T~gGvr~~PSreeLq~Fl~~c~~Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl 333 (700)
++..-|.|++|.|..|-.++.+..-+.++.|.+.|..+...-.--+-+|+|-.++...
T Consensus 9 ~L~~~g~r~T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3444699999999999998888778999999999988776666778899997776554
No 83
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=47.72 E-value=53 Score=31.67 Aligned_cols=66 Identities=21% Similarity=0.126 Sum_probs=39.1
Q ss_pred cCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhc
Q 005356 301 LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLG 378 (700)
Q Consensus 301 Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~~~L~r~~~s~q~~LReKA~KVL~lLg 378 (700)
+....++..|...|.++.|.||..|+.+|-.+.. ... .. .+.|..+.......||..|-+.|..++
T Consensus 155 ~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~---~~--------~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 155 INDKATIPLLINLLKDPNGDVRNWAAFAININKY-DNS---DI--------RDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp C---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC-CCH---HH--------HHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc-CcH---HH--------HHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 3333455566666677777777777777655421 111 01 134455556667788888888888887
No 84
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=47.64 E-value=48 Score=37.02 Aligned_cols=97 Identities=19% Similarity=0.261 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhccchhhHHHHHHHHHhhcc--CCCchHHHHHHHHHHHHhcCChhhHHHHHHhHHHHHHhhcccCCCCCC
Q 005356 32 KLEEICELLRSSHVSIGKEVSDFILKRLEH--KSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPL 109 (700)
Q Consensus 32 l~~EIA~~t~~s~~s~~~eI~dyLlkRL~~--ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~~IK~l~~F~GppDpl 109 (700)
.+.+|++.....-...+.+|+..|.+.|+. .+..||.-++..|-.++....++|..++..-...+..+..-+- ++
T Consensus 673 ~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~--~~- 749 (876)
T 1qgr_A 673 LVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQV--DK- 749 (876)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCC--CT-
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccC--CC-
Confidence 344555444322223357899999999987 3467999999999999887677788888777776666654331 11
Q ss_pred CCch---hhHHHHHHHHHHHHHhhc
Q 005356 110 KGDA---LNKAVRDMAHEAISAIFS 131 (700)
Q Consensus 110 ~Gd~---l~q~VR~~AkEll~aLf~ 131 (700)
..++ .-..||..+-+++..|+.
T Consensus 750 ~d~~~~~~~~~~r~~~~~~~~~i~~ 774 (876)
T 1qgr_A 750 SDYDMVDYLNELRESCLEAYTGIVQ 774 (876)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 123688888887777765
No 85
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=46.04 E-value=55 Score=33.50 Aligned_cols=72 Identities=10% Similarity=0.166 Sum_probs=53.5
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHhh
Q 005356 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAIF 130 (700)
Q Consensus 51 I~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aLf 130 (700)
.+..|.+-|++.++.||.+|+.+|.||+.. +++.++.+.+. .+|+.+...=..+|+ .||+.|-.++..|.
T Consensus 168 gi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~-g~i~~Lv~LL~~~d~--------~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 168 GFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSM-GMVQQLVALVRTEHS--------PFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHT-THHHHHHHHHTSCCS--------THHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHc-CCHHHHHHHHcCCCh--------hHHHHHHHHHHHHH
Confidence 667888888888899999999999999985 67777777653 455665554333332 38888888887777
Q ss_pred cC
Q 005356 131 SE 132 (700)
Q Consensus 131 ~d 132 (700)
..
T Consensus 238 ~~ 239 (296)
T 1xqr_A 238 TD 239 (296)
T ss_dssp TT
T ss_pred hC
Confidence 64
No 86
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=45.85 E-value=76 Score=30.55 Aligned_cols=61 Identities=18% Similarity=0.161 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhcc
Q 005356 303 ALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGE 379 (700)
Q Consensus 303 ~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~~~L~r~~~s~q~~LReKA~KVL~lLg~ 379 (700)
...+.+.|...|.++.|.||..|+.+|..+.... .. +.|..+...+. +|..|.+.|..+|.
T Consensus 190 ~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~---~~-----------~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 190 NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR---VL-----------SVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGG---GH-----------HHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHh---hH-----------HHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 4566788888889999999999888877665221 11 22333333433 89999999999876
No 87
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=44.91 E-value=13 Score=38.39 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=39.3
Q ss_pred HHHhhccCCCchHHHHHHHHHHHHhcC-ChhhHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHh
Q 005356 55 ILKRLEHKSPVVKQKALRLIKYSVGKS-GTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAI 129 (700)
Q Consensus 55 LlkRL~~ks~hVKlKaLKILkyLc~~G-s~~F~r~lrrns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aL 129 (700)
+-.=|+++.+.+.=|||-+|.-+...- .++...++.+-+..++.+...+|+|- +|++|+-+.+.|
T Consensus 194 I~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~----------~~~ka~~v~~~l 259 (265)
T 3b2a_A 194 IPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPI----------IRLKAKKVSDLI 259 (265)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHH----------HHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChh----------HHHHHHHHHHHH
Confidence 333344455555566666665555432 45666666666667777766666532 788888777765
No 88
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=43.91 E-value=66 Score=28.80 Aligned_cols=63 Identities=8% Similarity=0.053 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcC----ChhhHHHHHHhHHH
Q 005356 32 KLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKS----GTDFRREMQRHSAV 95 (700)
Q Consensus 32 l~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~G----s~~F~r~lrrns~~ 95 (700)
-...+..++.+.. ....+|++.+.++|.+..+.-|+-.|=|+..+|.+. ...|+..+......
T Consensus 23 sI~~~s~w~l~h~-~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~ 89 (132)
T 4flb_A 23 SIQGLSSWCIENK-KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPE 89 (132)
T ss_dssp HHHHHHHHHHHTG-GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhH-HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Confidence 3556666766543 456899999999999998989999999999988654 56788888777653
No 89
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=39.65 E-value=93 Score=29.08 Aligned_cols=69 Identities=23% Similarity=0.203 Sum_probs=50.0
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHH--hhhHHHhhhhcCCChhHHHHHHHHHHHhcc
Q 005356 306 MSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFC--ENNDVVVKCSESPQSSLREKANKVLSLLGE 379 (700)
Q Consensus 306 V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~--eN~~~L~r~~~s~q~~LReKA~KVL~lLg~ 379 (700)
+++.|.+-|.+..|.+|..|+.+|-.|..... +. .+.+. .-.+.|.++..+....+|..|-.+|..|-.
T Consensus 139 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~----~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGGN-EQ----IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HH----HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-HH----HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 45666677778899999999999999986432 11 12222 223667777778888999999999998863
No 90
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=39.12 E-value=97 Score=27.66 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhc---CChhhHHHHHHhHH
Q 005356 32 KLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGK---SGTDFRREMQRHSA 94 (700)
Q Consensus 32 l~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~---Gs~~F~r~lrrns~ 94 (700)
-...+..++.+.. ....+|++.+.++|.+..+.-|+=.|=|+..++++ -..+|+..+.+++.
T Consensus 22 sI~~~s~w~l~~~-~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~ 86 (135)
T 4fu3_A 22 SVQTLSLWLIHHR-KHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLV 86 (135)
T ss_dssp HHHHHHHHHHHTG-GGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3566777776543 45689999999999999888899999998888543 35678888888775
No 91
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=38.14 E-value=69 Score=35.25 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHH
Q 005356 46 SIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEA 125 (700)
Q Consensus 46 s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEl 125 (700)
+.+..++..|.+.|.+.+|+|+.||...|-.++...++.+.. ..-...++++. ..+| ..||..|=.+
T Consensus 117 ~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL---~d~d--------~~V~~~A~~a 183 (591)
T 2vgl_B 117 KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLI---ADSN--------PMVVANAVAA 183 (591)
T ss_dssp GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTT---SCSC--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHh---CCCC--------hhHHHHHHHH
Confidence 456677777999999999999999999999999977554322 11223344443 2223 2488887777
Q ss_pred HHHhhcCC
Q 005356 126 ISAIFSEE 133 (700)
Q Consensus 126 l~aLf~d~ 133 (700)
+.-|..+.
T Consensus 184 L~~i~~~~ 191 (591)
T 2vgl_B 184 LSEISESH 191 (591)
T ss_dssp HHHHTTSC
T ss_pred HHHHHhhC
Confidence 77666543
No 92
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=36.06 E-value=1e+02 Score=33.18 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=49.3
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcC----C-hhhHHHHHHh--HHHHHHhhcccCCCCCCCCchhhHHHHHHHH
Q 005356 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKS----G-TDFRREMQRH--SAVVRQLFHYKGQLDPLKGDALNKAVRDMAH 123 (700)
Q Consensus 51 I~dyLlkRL~~ks~hVKlKaLKILkyLc~~G----s-~~F~r~lrrn--s~~IK~l~~F~GppDpl~Gd~l~q~VR~~Ak 123 (700)
+++.|.+-|+.+.+.|...+|..|..++..+ . +.+.+.+.+. ...|..|+++ .+..|+++|.
T Consensus 402 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~-----------~n~~i~~~A~ 470 (510)
T 3ul1_B 402 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH-----------ENESVYKASL 470 (510)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGC-----------SSHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcC-----------CCHHHHHHHH
Confidence 3567888888888888899999999888643 2 3444443332 2356666532 1456999999
Q ss_pred HHHHHhhcC
Q 005356 124 EAISAIFSE 132 (700)
Q Consensus 124 Ell~aLf~d 132 (700)
++++--|++
T Consensus 471 ~iie~yf~~ 479 (510)
T 3ul1_B 471 NLIEKYFSV 479 (510)
T ss_dssp HHHHHHCC-
T ss_pred HHHHHHCCC
Confidence 999999983
No 93
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=33.81 E-value=57 Score=37.74 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=61.1
Q ss_pred HHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHHHHHHhhcccCCCCCCCCchhhHHHHHHHHHHHHHh
Q 005356 50 EVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKGDALNKAVRDMAHEAISAI 129 (700)
Q Consensus 50 eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~~IK~l~~F~GppDpl~Gd~l~q~VR~~AkEll~aL 129 (700)
+-+.-|+.-|+..+-||++-+|++|..||.+..+..+..+.....-|-.+..+=. | -.+.||.+|=-++-.|
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~--d------~rE~iRneallLL~~L 193 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA--D------SREVIRNDGVLLLQAL 193 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG--C------SSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh--C------chHHHHHHHHHHHHHH
Confidence 3455667778889999999999999999999888899999887777777775542 2 2578999999998888
Q ss_pred hcCC
Q 005356 130 FSEE 133 (700)
Q Consensus 130 f~d~ 133 (700)
-.++
T Consensus 194 t~~n 197 (651)
T 3grl_A 194 TRSN 197 (651)
T ss_dssp HTTC
T ss_pred hcCC
Confidence 7754
No 94
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=33.56 E-value=88 Score=31.70 Aligned_cols=80 Identities=14% Similarity=0.069 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhhc-cCCCchHHHHHHHHHHHHhcCC-hhhHHHHHHhHHHHHHhhcccCCC----CCCCCchhhHHHHHH
Q 005356 48 GKEVSDFILKRLE-HKSPVVKQKALRLIKYSVGKSG-TDFRREMQRHSAVVRQLFHYKGQL----DPLKGDALNKAVRDM 121 (700)
Q Consensus 48 ~~eI~dyLlkRL~-~ks~hVKlKaLKILkyLc~~Gs-~~F~r~lrrns~~IK~l~~F~Gpp----Dpl~Gd~l~q~VR~~ 121 (700)
.+.+|..++.|.+ -++|.+ +|.|+|+.||-++|- .....|+++-...||--+-.+-+| .| +|-+++++=|++
T Consensus 11 l~~~~~a~ma~A~~~kDp~~-~KlL~v~~W~~knGl~D~mynfs~~Dp~g~Km~r~ist~P~~a~kp-~GPtq~~AQ~~K 88 (242)
T 3zed_D 11 LQGLLQATMARAKEVKDAEV-FKLLKLMSWTRKNDLTDHMYEWSKEDPDAIKFGRLVSTPPKHQEKP-KGPDQHTAQEAK 88 (242)
T ss_pred HHHHHHHHHHHHhhccCHHH-HHHHHHHHHHhccCHHHHHHHHHhhCccHHHHHHHhcCCccccCCC-CCCCHHHHHHHH
Confidence 4677888888877 466888 999999999999995 456667777666555433333222 24 777888777777
Q ss_pred HHHHHHHh
Q 005356 122 AHEAISAI 129 (700)
Q Consensus 122 AkEll~aL 129 (700)
|.-+-.-+
T Consensus 89 AvRIS~d~ 96 (242)
T 3zed_D 89 ATRISLDA 96 (242)
T ss_pred HHHHHHHH
Confidence 77665433
No 95
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=31.48 E-value=2e+02 Score=29.58 Aligned_cols=77 Identities=12% Similarity=0.243 Sum_probs=50.6
Q ss_pred hHHHHHHHHhhcCCcccCCCHHHHHHHHHHHhh--cCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHH
Q 005356 268 REEKLLETIVTYGGVRLQPTRDAIQVFLVEAAK--LDALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIIL 345 (700)
Q Consensus 268 ~E~~LVe~i~T~gGvr~~PSreeLq~Fl~~c~~--Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~ 345 (700)
-|..+++ +|. .--..|.+.-++.-+..... -+...+..+|..++....|.|-+|+|.+|-.||+.+.. .+.
T Consensus 24 l~kaV~K--AT~-~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~~~~~w~va~K~LivlH~llreG~~----~~~ 96 (299)
T 1hx8_A 24 LAKSVCK--ATT-EECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNANWVVVYKSLITTHHLMAYGNE----RFM 96 (299)
T ss_dssp HHHHHHH--HSC-SSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH----HHH
T ss_pred HHHHHHh--ccC-CCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhcCCH----HHH
Confidence 3555454 343 22344555555444443222 34478888999999999999999999999999998763 345
Q ss_pred HHHHhh
Q 005356 346 SYFCEN 351 (700)
Q Consensus 346 ~Yf~eN 351 (700)
+|+..+
T Consensus 97 ~~l~~~ 102 (299)
T 1hx8_A 97 QYLASS 102 (299)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 565443
No 96
>3lb6_A Interleukin-13, IL-13; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_B*
Probab=30.62 E-value=1.6e+02 Score=27.57 Aligned_cols=61 Identities=8% Similarity=0.054 Sum_probs=37.1
Q ss_pred cCCCCCCCch---hhHHHHHHHHHhccchhhHH------------HHHHHHHhhccCCCchHHHHHHHHHHHHhcC
Q 005356 21 TSDEDKVTPV---YKLEEICELLRSSHVSIGKE------------VSDFILKRLEHKSPVVKQKALRLIKYSVGKS 81 (700)
Q Consensus 21 TSddd~PtPG---Yl~~EIA~~t~~s~~s~~~e------------I~dyLlkRL~~ks~hVKlKaLKILkyLc~~G 81 (700)
+|..+.|.+. -+.+|+.++|.+.....|+. -...|....+=+++....|.+|+|.-+|-+-
T Consensus 18 asp~PVp~s~aLkELIeELvNITqnqkapLCNGSMVWSVnlt~~~~CaAleSL~NiS~C~aIqktqR~L~~lc~~k 93 (132)
T 3lb6_A 18 ASPGPVPPSTALRELIEELVNITQNQKAPLCNGSMVWSINLTAGMYCAALESLINVSGCSAIEKTQRMLSGFCPHK 93 (132)
T ss_dssp ------CCSHHHHHHHHHHHHHHHSCSSCGGGGCEEECCCSSSSCHHHHHHHHTTCTTCSTTHHHHHHHHHHSSSC
T ss_pred CCCCCCCchHHHHHHHHHHHhhccCCCCCCcCCceEEEEeccchHHHHHHHHhhcccccHHHHHHHHHHhcccCCC
Confidence 3444444443 24667777887543334442 3455666666777888899999999999763
No 97
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=29.23 E-value=90 Score=37.16 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhcc
Q 005356 303 ALAMSRALEAKLQ-SPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGE 379 (700)
Q Consensus 303 ~e~V~elL~~kL~-~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~~~L~r~~~s~q~~LReKA~KVL~lLg~ 379 (700)
...|+..|...|. ++.|.+|..||.++-.++...... +..|+.+-.+.|..+...+...+|++|-+.|..|..
T Consensus 131 ~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~----l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~ 204 (1230)
T 1u6g_C 131 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL----LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVM 204 (1230)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS----CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhH----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 3467788888887 588999999998888887643221 123444444666667777888999999888877764
No 98
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.88 E-value=58 Score=29.31 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=45.4
Q ss_pred cCCcccCCCHHHHHHHHHHHh--hcCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 005356 279 YGGVRLQPTRDAIQVFLVEAA--KLDALAMSRALEAKLQSPLWQVRMKAICVLESIL 333 (700)
Q Consensus 279 ~gGvr~~PSreeLq~Fl~~c~--~Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl 333 (700)
.-|.|.+|.|..|-.++.+.. -+.++.|.+.|..+...-.--+-+|.|-.|+...
T Consensus 11 ~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 11 KAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 369999999999999887654 5999999999998877777888999997776544
No 99
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.76 E-value=63 Score=26.09 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=43.4
Q ss_pred cCCcccCCCHHHHHHHHHHH--hhcCHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 005356 279 YGGVRLQPTRDAIQVFLVEA--AKLDALAMSRALEAKLQSPLWQVRMKAICVLESI 332 (700)
Q Consensus 279 ~gGvr~~PSreeLq~Fl~~c--~~Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaL 332 (700)
.-|.|+.|.|..|-.++.+. ..+.++.|++.|.++...-+--+-.|.|-.||..
T Consensus 10 ~~g~~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 10 KAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA 65 (83)
T ss_dssp HTTCCCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HcCCCcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 35999999999999999876 4699999999998776555666778888777654
No 100
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=28.37 E-value=2e+02 Score=31.56 Aligned_cols=70 Identities=21% Similarity=0.253 Sum_probs=48.7
Q ss_pred HhhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCC-----------------------------
Q 005356 14 SRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSP----------------------------- 64 (700)
Q Consensus 14 ~~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~----------------------------- 64 (700)
-.||.+.|+.. ..-+. |..+-=+||.+-.+ -.++++.|+.|.+...|
T Consensus 48 ~~LVe~Lt~~~-~~D~~--f~~~FLlTyRsF~t-p~eLL~~Li~Ry~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 123 (490)
T 2ii0_A 48 IKLIERLTYHM-YADPN--FVRTFLTTYRSFCK-PQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYI 123 (490)
T ss_dssp HHHHHHHTCSS-SCCHH--HHHHHHHHGGGTSC-HHHHHHHHHHHHCCCCCCCCHHHHHHHHTTCSCCCHHHHHHHHHTH
T ss_pred HHHHHHHccCC-CCCHH--HHHHHHHHHHhhCC-HHHHHHHHHHHHhccCCCchhhhhhhhccCCccchHHHHHHHHhhh
Confidence 36777777643 33333 44555567777554 36999999999975322
Q ss_pred -chHHHHHHHHHHHHhcCChhhHH
Q 005356 65 -VVKQKALRLIKYSVGKSGTDFRR 87 (700)
Q Consensus 65 -hVKlKaLKILkyLc~~Gs~~F~r 87 (700)
-|+++++.+|++-+++-..+|.+
T Consensus 124 ~~iq~rV~~vl~~Wv~~~~~DF~~ 147 (490)
T 2ii0_A 124 QPVQLRVLNVCRHWVEHHFYDFER 147 (490)
T ss_dssp HHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcccccc
Confidence 26678999999999887788865
No 101
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=27.45 E-value=87 Score=35.13 Aligned_cols=89 Identities=12% Similarity=0.008 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHHHHHHhhcccCCCCCCC
Q 005356 31 YKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLK 110 (700)
Q Consensus 31 Yl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~~IK~l~~F~GppDpl~ 110 (700)
|++.|-+..+-+.+.....+++++|.+|+...++.||.-.|..+--+..+-. +.+. . +++-+..+...
T Consensus 502 wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p-~~~~----~--i~~~l~~~~~~----- 569 (621)
T 2vgl_A 502 YILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP-EVKA----T--IQDVLRSDSQL----- 569 (621)
T ss_dssp HHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG-GGHH----H--HHHHHSSHHHH-----
T ss_pred HHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh-HHHH----H--HHHHHHHHhcC-----
Confidence 7888888777654321123778899999999999999999988777765443 2221 1 22223333320
Q ss_pred CchhhHHHHHHHHHHHHHhhcC
Q 005356 111 GDALNKAVRDMAHEAISAIFSE 132 (700)
Q Consensus 111 Gd~l~q~VR~~AkEll~aLf~d 132 (700)
++.+--||++|.|.+.+|-.+
T Consensus 570 -~~~d~evrdRA~~y~~Ll~~~ 590 (621)
T 2vgl_A 570 -KNADVELQQRAVEYLRLSTVA 590 (621)
T ss_dssp -SCSSHHHHHHHHHHHHHHHSS
T ss_pred -CCCCHHHHHHHHHHHHHHccC
Confidence 022334999999999998653
No 102
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=26.94 E-value=2.7e+02 Score=25.35 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=37.8
Q ss_pred hcCCcccCCCHHHHHHHHHHHhhcC----HHHHHHHHHHHhCCc--hhHHHHHHH
Q 005356 278 TYGGVRLQPTRDAIQVFLVEAAKLD----ALAMSRALEAKLQSP--LWQVRMKAI 326 (700)
Q Consensus 278 T~gGvr~~PSreeLq~Fl~~c~~Ld----~e~V~elL~~kL~~~--~WQvrlRAL 326 (700)
...|.-+.|+++.|..=+++|..+| +-+++|.+-.|.... .|+.-+.-|
T Consensus 35 ~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 35 TLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL 89 (109)
T ss_dssp HHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 3458899999999999999999999 678888888887332 355544444
No 103
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.24 E-value=71 Score=29.09 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=46.3
Q ss_pred HhhcCCcccCCCHHHHHHHHHHHh-hcCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 005356 276 IVTYGGVRLQPTRDAIQVFLVEAA-KLDALAMSRALEAKLQSPLWQVRMKAICVLESIL 333 (700)
Q Consensus 276 i~T~gGvr~~PSreeLq~Fl~~c~-~Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl 333 (700)
++..-|.|++|.|..|-.++.+.. -+.++.|.+.|..+...-.--+-+|.|-.|+...
T Consensus 12 ~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 12 TLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 344569999999999999988753 4899999999988776667788999997776543
No 104
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=26.05 E-value=1.5e+02 Score=34.62 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=49.0
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhh-------------hhcCCChhHHHHHHH
Q 005356 306 MSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVK-------------CSESPQSSLREKANK 372 (700)
Q Consensus 306 V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~~~L~r-------------~~~s~q~~LReKA~K 372 (700)
+|+.|..-|=++.|.+|.=|..+|=.|++..+.-. .. .-..|.+...| .++.+=+||||.|-+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GA-GR---~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQ 250 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGG-DI---QIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAY 250 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----C---CCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCC-ce---eccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHH
Confidence 99999999999999999999999999998875210 00 01122233333 245677899999999
Q ss_pred HHHHh
Q 005356 373 VLSLL 377 (700)
Q Consensus 373 VL~lL 377 (700)
+|..+
T Consensus 251 tLGaL 255 (800)
T 3oc3_A 251 LLSRI 255 (800)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99888
No 105
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=25.86 E-value=1.5e+02 Score=32.45 Aligned_cols=97 Identities=10% Similarity=-0.067 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChh
Q 005356 5 RRAVESYWRSRMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTD 84 (700)
Q Consensus 5 r~~v~~~~~~~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~ 84 (700)
.+|++-|.+..-+++.+--.+.|.-+..|.-||.+.+.- +. ..+.+.++ .|||.|++-.++.-|+.
T Consensus 368 ~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~-G~-~~eA~~~~------------~~Al~i~~~~lG~~Hp~ 433 (490)
T 3n71_A 368 EEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHA-GH-IEVGHGMI------------CKAYAILLVTHGPSHPI 433 (490)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT-TC-HHHHHHHH------------HHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC-CC-HHHHHHHH------------HHHHHHHHHHhCCCChH
Confidence 468888888888888999999999999999999997754 23 23444433 68999999888888887
Q ss_pred hHHHHHHhHH-HHHHhhcccCCCCCCCCchhhHHHHHHH
Q 005356 85 FRREMQRHSA-VVRQLFHYKGQLDPLKGDALNKAVRDMA 122 (700)
Q Consensus 85 F~r~lrrns~-~IK~l~~F~GppDpl~Gd~l~q~VR~~A 122 (700)
....+ .+.. .-.++..|+.. ..+|++.|++|
T Consensus 434 ~~~~~-~~l~~~~~e~~~~~~a------e~~~~~~~~~~ 465 (490)
T 3n71_A 434 TKDLE-AMRMQTEMELRMFRQN------EFMYHKMREAA 465 (490)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHH------HHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 77654 4443 33356666542 56777777777
No 106
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=25.18 E-value=1.1e+02 Score=34.83 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=56.4
Q ss_pred hHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHHHHHHhhcccCCCCCCCC
Q 005356 32 KLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVRQLFHYKGQLDPLKG 111 (700)
Q Consensus 32 l~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~~IK~l~~F~GppDpl~G 111 (700)
.+..+++..- ...+..++.+|...|++.++.||.-|++.|-.++......+...+. .+|..+...-. |+
T Consensus 344 ~L~~la~~~~---~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~---~~l~~l~~~l~--d~--- 412 (852)
T 4fdd_A 344 ALDVLANVYR---DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP---ELIPHLIQCLS--DK--- 412 (852)
T ss_dssp HHHHHHHHHG---GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHH---HHHHHHHHHTT--CS---
T ss_pred HHHHHHHhcc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHH---HHHHHHHHHcC--CC---
Confidence 3344554432 2456789999999999999999999999999988744443332222 23444333322 32
Q ss_pred chhhHHHHHHHHHHHHHhhc
Q 005356 112 DALNKAVRDMAHEAISAIFS 131 (700)
Q Consensus 112 d~l~q~VR~~AkEll~aLf~ 131 (700)
...||.+|-.++..+..
T Consensus 413 ---~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 413 ---KALVRSITCWTLSRYAH 429 (852)
T ss_dssp ---SHHHHHHHHHHHHHTHH
T ss_pred ---CHHHHHHHHHHHHHHHH
Confidence 45699999888887665
No 107
>2kzs_A Death-associated protein 6; helical bundle,DHB domain, FAS death-domain associated prote rassf1C interacting domain, apoptosis; NMR {Homo sapiens} PDB: 2kzu_A
Probab=24.67 E-value=70 Score=28.32 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHHHHH
Q 005356 32 KLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSAVVR 97 (700)
Q Consensus 32 l~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~~IK 97 (700)
+++|..+.+..-. .-+-|++.||-+|..+.+|.. | -|.+|+..|.|.+...+
T Consensus 16 LfeEFv~~C~~~t-~d~PeV~~fL~~r~~kas~~f----------L---~SveF~n~L~rcL~Raq 67 (94)
T 2kzs_A 16 LFEEFLELCKMQT-ADHPEVVPFLYNRQQRAHSLF----------L---ASAEFCNILSRVLSRAR 67 (94)
T ss_dssp HHHHHHHHHHHHC-TTCTTHHHHHHHHHHTBCHHH----------H---TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-cCCcHHHHHHHHHhccCCchh----------h---hHHHHHHHHHHHHHHHh
Confidence 7888888876432 235689999999999887654 1 47788888888776544
No 108
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=24.35 E-value=1.9e+02 Score=31.05 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=46.3
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHHHhcC----C-hhhHHHHHHh--HHHHHHhhcccCCCCCCCCchhhHHHHHHHH
Q 005356 51 VSDFILKRLEHKSPVVKQKALRLIKYSVGKS----G-TDFRREMQRH--SAVVRQLFHYKGQLDPLKGDALNKAVRDMAH 123 (700)
Q Consensus 51 I~dyLlkRL~~ks~hVKlKaLKILkyLc~~G----s-~~F~r~lrrn--s~~IK~l~~F~GppDpl~Gd~l~q~VR~~Ak 123 (700)
+++.|.+=|+.+.+.|..-+|..|..++..+ . +.+.+.+.+. ...|..|+++ .+..|+++|.
T Consensus 421 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~-----------~n~~i~~~A~ 489 (529)
T 3tpo_A 421 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH-----------ENESVYKASL 489 (529)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGC-----------SSHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcC-----------CCHHHHHHHH
Confidence 3567888888888888888999998887533 2 3333333221 2344445422 1556999999
Q ss_pred HHHHHhhcC
Q 005356 124 EAISAIFSE 132 (700)
Q Consensus 124 Ell~aLf~d 132 (700)
++++--|++
T Consensus 490 ~iie~yf~~ 498 (529)
T 3tpo_A 490 NLIEKYFSV 498 (529)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHCCC
Confidence 999999983
No 109
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=23.83 E-value=1.6e+02 Score=35.47 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=49.0
Q ss_pred hhhhcccCCCCCCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCc-----------------------------
Q 005356 15 RMIDGATSDEDKVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPV----------------------------- 65 (700)
Q Consensus 15 ~lV~kATSddd~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~h----------------------------- 65 (700)
.||..-|+++ .+-|. |-.+==+||.+-.+ -.++++.|..|.+...|.
T Consensus 608 ~LVe~Lt~~~-~~D~~--f~~~FLlTyRsF~t-p~elL~lLi~Ry~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 683 (1049)
T 3ksy_A 608 KLIERLTYHM-YADPN--FVRTFLTTYRSFCK-PQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQ 683 (1049)
T ss_dssp HHHHHHTCSS-CCCHH--HHHHHHHSCTTTSC-HHHHHHHHHHHHCCCCCCCCHHHHHHTTSSSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHcccc-CCCHH--HHHHHHHHhhccCC-HHHHHHHHHHHhccCCCccchhhhhhccccccchhHHHHHHHHhhcc
Confidence 5667777753 34444 44455567776554 379999999999855432
Q ss_pred -hHHHHHHHHHHHHhcCChhhHH
Q 005356 66 -VKQKALRLIKYSVGKSGTDFRR 87 (700)
Q Consensus 66 -VKlKaLKILkyLc~~Gs~~F~r 87 (700)
|+++++.||++-+.+-..+|..
T Consensus 684 ~ir~rV~~vLk~Wle~~~~DF~~ 706 (1049)
T 3ksy_A 684 PVQLRVLNVCRHWVEHHFYDFER 706 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHH
T ss_pred chhhhHHHHHHHHHHhCcccccC
Confidence 6788999999999887788874
No 110
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=23.65 E-value=1.6e+02 Score=30.63 Aligned_cols=65 Identities=15% Similarity=0.075 Sum_probs=48.5
Q ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhh--HHHhhhhcCCChhHHHHHHHHHHHh
Q 005356 307 SRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENN--DVVVKCSESPQSSLREKANKVLSLL 377 (700)
Q Consensus 307 ~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~--~~L~r~~~s~q~~LReKA~KVL~lL 377 (700)
++.|..-|.+....++..|..+|..|... . .+...+.+.. +.|+++..++...||.+|..+|..|
T Consensus 462 v~~l~~ll~~~~~~v~~~a~~~l~~l~~~---~---~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 462 IPLFVQLLYSPIENIQRVAAGVLCELAQD---K---EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTS---H---HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHcCCchHHHHHHHHHHHHHhcC---H---HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 35566666788888999998888887642 1 2234444443 8899999999999999999999865
No 111
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=23.50 E-value=1.8e+02 Score=32.05 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhh--HHHhhhhcCCChhHHHHHHHHHHHhcccc
Q 005356 306 MSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENN--DVVVKCSESPQSSLREKANKVLSLLGEEQ 381 (700)
Q Consensus 306 V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~--~~L~r~~~s~q~~LReKA~KVL~lLg~~~ 381 (700)
+++.|.+-|.+....++..|+++|..|.... .+.+.+.+.. +.|.++..+....+|..|.++|..|....
T Consensus 458 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 458 TIPLFVQLLYSPIENIQRVAAGVLCELAQDK------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 4456666667788889999999999987531 2344555443 78888999999999999999999986654
No 112
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.08 E-value=68 Score=30.04 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=48.2
Q ss_pred HHHHhhcCCcccCCCHHHHHHHHHHH-hhcCHHHHHHHHHHH--hCCchhHHHHHHHHHHHHHH
Q 005356 273 LETIVTYGGVRLQPTRDAIQVFLVEA-AKLDALAMSRALEAK--LQSPLWQVRMKAICVLESIL 333 (700)
Q Consensus 273 Ve~i~T~gGvr~~PSreeLq~Fl~~c-~~Ld~e~V~elL~~k--L~~~~WQvrlRALcvLEaLl 333 (700)
+++++..-|.|.+|.|..|-.++.+. .-+.++.|.+.|..+ ...-.--+-+|+|-.|+...
T Consensus 20 ~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 20 FKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 44556667999999999998888776 459999999999988 65556678899987766543
No 113
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=23.07 E-value=51 Score=37.04 Aligned_cols=69 Identities=19% Similarity=0.123 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhc--CCChhHHHHHHHHHHHhccc
Q 005356 304 LAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSE--SPQSSLREKANKVLSLLGEE 380 (700)
Q Consensus 304 e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~~~L~r~~~--s~q~~LReKA~KVL~lLg~~ 380 (700)
..+++.|.+++...+-.||+-+|.++--|..+.. +....+ ...|.+|.. +...-||+||.-.+++|..+
T Consensus 520 ~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p-~~~~~i-------~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~ 590 (621)
T 2vgl_A 520 LIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP-EVKATI-------QDVLRSDSQLKNADVELQQRAVEYLRLSTVA 590 (621)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG-GGHHHH-------HHHHSSHHHHSCSSHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh-HHHHHH-------HHHHHHHhcCCCCCHHHHHHHHHHHHHHccC
Confidence 3556677777766677788877777666655432 111122 233455665 88888999999999999764
No 114
>1wq6_A AML1-ETO; NHR2, oncoprotein; 2.00A {Homo sapiens}
Probab=22.47 E-value=2e+02 Score=24.37 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=39.8
Q ss_pred CCCchhhHHHHHHHHHhccchhhHHHHHHHHHhhccCCCchHHHHHHHHHHHHhcCChhhHHHHHHhHH
Q 005356 26 KVTPVYKLEEICELLRSSHVSIGKEVSDFILKRLEHKSPVVKQKALRLIKYSVGKSGTDFRREMQRHSA 94 (700)
Q Consensus 26 ~PtPGYl~~EIA~~t~~s~~s~~~eI~dyLlkRL~~ks~hVKlKaLKILkyLc~~Gs~~F~r~lrrns~ 94 (700)
..-|++.+.|=-+.. + ..++|||+|+.|- ..+|.||.-|...-.++.--|+||.+.
T Consensus 12 ~~~~~~~~~eeWkhi---~-~mLnCI~~MVEKT---------rRsltvLrRcQe~dReeln~W~Rr~~d 67 (72)
T 1wq6_A 12 HRLTDREWAEEWKHL---D-HLLNCIMDMVEKT---------RRSLTVLRRCQEADREELNYWIRRYSD 67 (72)
T ss_dssp CSCCHHHHHHHHHHH---H-HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccHHHHHHhH---H-HHHHHHHHHHHHH---------HHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 455677766644443 2 3679999998752 467888886555468889999998875
No 115
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=22.45 E-value=3.8e+02 Score=31.87 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhHHHhhhhcCCChhHHHHHHHHHHHhcc
Q 005356 303 ALAMSRALEAKLQSPLWQVRMKAICVLESILRKKDDEKFSIILSYFCENNDVVVKCSESPQSSLREKANKVLSLLGE 379 (700)
Q Consensus 303 ~e~V~elL~~kL~~~~WQvrlRALcvLEaLl~s~~~d~~~~v~~Yf~eN~~~L~r~~~s~q~~LReKA~KVL~lLg~ 379 (700)
...++..|.+.|.++.|.+|.-|+-+|..|++.-..+. .+++ .+.|..+..+++..+|..|-+.|..+-.
T Consensus 46 ~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~----~~~i---~~~Ll~~l~d~~~~vR~~a~~~L~~i~~ 115 (1230)
T 1u6g_C 46 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ----VETI---VDTLCTNMLSDKEQLRDISSIGLKTVIG 115 (1230)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH----HHHH---HHHHHHHTTCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHH----HHHH---HHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 35778888888999999999999999999887543211 1122 2344444456667789888777766543
No 116
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.33 E-value=1.2e+02 Score=27.87 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=45.9
Q ss_pred HHHHhhcCCcccCCCHHHHHHHHHHHh-hcCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 005356 273 LETIVTYGGVRLQPTRDAIQVFLVEAA-KLDALAMSRALEAKLQSPLWQVRMKAICVLESIL 333 (700)
Q Consensus 273 Ve~i~T~gGvr~~PSreeLq~Fl~~c~-~Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl 333 (700)
+++++..-|.|.+|.|..|-.++.+.. -+.++.|.+.|..+...-.--+-+|.|-.|+...
T Consensus 14 ~~~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334455579999999999999988763 4999999999988876666778899987776543
No 117
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.22 E-value=72 Score=29.34 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=45.9
Q ss_pred hcCCcccCCCHHHHHHHHHHHh--hcCHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Q 005356 278 TYGGVRLQPTRDAIQVFLVEAA--KLDALAMSRALEAKLQSPLWQVRMKAICVLESIL 333 (700)
Q Consensus 278 T~gGvr~~PSreeLq~Fl~~c~--~Ld~e~V~elL~~kL~~~~WQvrlRALcvLEaLl 333 (700)
..-|.|++|.|..|-.++.+.. -+.++.|.+.|..+...-.--+-+|.|-.|+...
T Consensus 9 ~~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 9 KDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3359999999999999997764 5899999999998876677788899997776543
Done!