Your job contains 1 sequence.
>005357
MGGGFRPMSGPRSGMNYPLPQSLPVPQLSGQKRGFSGRGGPSPDLVDGSSFAKLFVGSVP
KTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLP
GGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK
QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDSRSGPTFGGP
GFGPRFQPPSPRPPPNFGDPITDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDL
GMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQAPSLGQQISPLQKPLQSPQHMPPL
QLHPQVPSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSST
ALPTPLNIKPQSSSLPGGTNQQQLPAPVQQQLHQPYQQSPSQLAQMLSQQTQTLQATFQS
SQQAFSQLQQQLQLMQPSNQNLPLQQGSQGTKQQSQWAGIAPQTVASAPASAPAADLPVS
TSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFEQQQQQQK
PPVQQPPSQLHSQVLPAQHIPQTQQVQLQTQLRQQQQQQLQHPFSSSYQAPVVRGQHNAQ
ELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKNKPSGT
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005357
(700 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q6K271 - symbol:P0415D04.46-1 "FCA" species:399... 857 1.3e-107 3
UNIPROTKB|Q6WQT6 - symbol:Q6WQT6 "Flowering time control ... 857 1.3e-107 3
TAIR|locus:2065190 - symbol:AT2G47310 species:3702 "Arabi... 507 2.3e-60 2
TAIR|locus:2139340 - symbol:RBP-DR1 "RNA-binding protein-... 409 2.5e-41 2
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp... 403 8.4e-41 2
UNIPROTKB|A6H776 - symbol:BRUNOL4 "Uncharacterized protei... 403 5.8e-40 2
UNIPROTKB|B4DHA8 - symbol:CELF4 "CUGBP Elav-like family m... 403 5.8e-40 2
UNIPROTKB|Q4R535 - symbol:CELF4 "CUGBP Elav-like family m... 403 5.8e-40 2
TAIR|locus:2825067 - symbol:BRN2 "Bruno-like 2" species:3... 421 1.8e-39 1
UNIPROTKB|Q9BZC1 - symbol:CELF4 "CUGBP Elav-like family m... 394 5.1e-39 2
UNIPROTKB|Q5NVC8 - symbol:CELF4 "CUGBP Elav-like family m... 394 5.1e-39 2
MGI|MGI:1932407 - symbol:Celf4 "CUGBP, Elav-like family m... 394 5.1e-39 2
ZFIN|ZDB-GENE-000501-2 - symbol:celf3a "cugbp, Elav-like ... 388 6.5e-39 2
MGI|MGI:1923433 - symbol:Celf6 "CUGBP, Elav-like family m... 376 1.7e-38 2
RGD|1310451 - symbol:Celf6 "CUGBP, Elav-like family membe... 376 3.5e-38 2
UNIPROTKB|E1B8K2 - symbol:CELF6 "Uncharacterized protein"... 377 7.3e-38 2
UNIPROTKB|F1SHM1 - symbol:CELF6 "Uncharacterized protein"... 377 7.3e-38 2
UNIPROTKB|Q96J87 - symbol:CELF6 "CUGBP Elav-like family m... 376 7.3e-38 2
UNIPROTKB|Q7ZWM3 - symbol:tnrc4-b "CUGBP Elav-like family... 377 3.1e-37 2
UNIPROTKB|F1PXQ8 - symbol:CELF5 "Uncharacterized protein"... 399 3.9e-37 1
UNIPROTKB|Q8N6W0 - symbol:CELF5 "CUGBP Elav-like family m... 397 6.3e-37 1
RGD|1565016 - symbol:Celf5 "CUGBP, Elav-like family membe... 393 1.7e-36 1
ZFIN|ZDB-GENE-040718-300 - symbol:celf4 "CUGBP, Elav-like... 390 3.5e-36 1
UNIPROTKB|Q91579 - symbol:tnrc4-a "CUGBP Elav-like family... 385 1.2e-35 1
FB|FBgn0262475 - symbol:bru-2 "bruno-2" species:7227 "Dro... 375 1.9e-35 2
UNIPROTKB|F1NXF6 - symbol:BRUNOL6 "Uncharacterized protei... 354 5.1e-35 2
MGI|MGI:1342295 - symbol:Celf1 "CUGBP, Elav-like family m... 377 8.3e-35 1
RGD|1307721 - symbol:Celf1 "CUGBP, Elav-like family membe... 377 8.3e-35 1
UNIPROTKB|Q4QQT3 - symbol:Celf1 "CUGBP Elav-like family m... 377 8.3e-35 1
ZFIN|ZDB-GENE-000501-1 - symbol:celf1 "cugbp, Elav-like f... 379 1.3e-34 1
UNIPROTKB|A7MB95 - symbol:CUGBP1 "Uncharacterized protein... 375 1.3e-34 1
UNIPROTKB|Q92879 - symbol:CELF1 "CUGBP Elav-like family m... 375 1.3e-34 1
UNIPROTKB|E2R8F6 - symbol:CELF1 "Uncharacterized protein"... 375 1.5e-34 1
UNIPROTKB|G5EA30 - symbol:CELF1 "CUG triplet repeat, RNA ... 375 1.8e-34 1
UNIPROTKB|Q08E07 - symbol:CELF3 "CUGBP Elav-like family m... 372 2.8e-34 1
UNIPROTKB|Q5SZQ7 - symbol:CELF3 "CUGBP Elav-like family m... 372 2.8e-34 1
UNIPROTKB|Q5SZQ8 - symbol:CELF3 "CUGBP Elav-like family m... 372 2.8e-34 1
RGD|1563168 - symbol:Celf3 "CUGBP, Elav-like family membe... 372 2.8e-34 1
UNIPROTKB|F1ND14 - symbol:CELF1 "CUGBP Elav-like family m... 371 3.6e-34 1
UNIPROTKB|Q5F3T7 - symbol:CELF1 "CUGBP Elav-like family m... 371 3.6e-34 1
MGI|MGI:1926034 - symbol:Celf3 "CUGBP, Elav-like family m... 371 3.6e-34 1
UNIPROTKB|E2RJG5 - symbol:CELF6 "Uncharacterized protein"... 334 2.1e-33 2
ZFIN|ZDB-GENE-050208-746 - symbol:celf5 "cugbp, Elav-like... 376 2.2e-33 1
UNIPROTKB|E1C045 - symbol:CELF2 "CUGBP Elav-like family m... 361 4.1e-33 1
UNIPROTKB|F1NZY6 - symbol:CELF2 "CUGBP Elav-like family m... 361 4.1e-33 1
UNIPROTKB|F1P674 - symbol:CELF2 "Uncharacterized protein"... 361 4.1e-33 1
UNIPROTKB|Q7T2T1 - symbol:CELF2 "CUGBP Elav-like family m... 358 8.5e-33 1
UNIPROTKB|F1P017 - symbol:CELF2 "CUGBP Elav-like family m... 361 1.4e-32 1
UNIPROTKB|Q5VZZ6 - symbol:CELF2 "CUGBP Elav-like family m... 361 2.8e-32 1
UNIPROTKB|O95319 - symbol:CELF2 "CUGBP Elav-like family m... 361 6.2e-32 1
MGI|MGI:1338822 - symbol:Celf2 "CUGBP, Elav-like family m... 361 6.2e-32 1
RGD|68347 - symbol:Celf2 "CUGBP, Elav-like family member ... 361 6.2e-32 1
UNIPROTKB|Q5R995 - symbol:CELF1 "CUGBP Elav-like family m... 361 7.9e-32 1
DICTYBASE|DDB_G0270634 - symbol:DDB_G0270634 "putative sp... 333 8.0e-32 2
ZFIN|ZDB-GENE-110408-50 - symbol:celf3b "cugbp, Elav-like... 349 1.0e-31 1
UNIPROTKB|E9PC62 - symbol:CELF2 "CUGBP Elav-like family m... 361 1.1e-31 1
UNIPROTKB|F1ST15 - symbol:CELF3 "Uncharacterized protein"... 347 1.8e-31 1
UNIPROTKB|H0Y623 - symbol:CELF3 "CUGBP Elav-like family m... 346 2.3e-31 1
ZFIN|ZDB-GENE-030826-35 - symbol:celf2 "cugbp, Elav-like ... 358 8.1e-31 1
WB|WBGene00001340 - symbol:etr-1 species:6239 "Caenorhabd... 357 1.2e-30 1
FB|FBgn0000114 - symbol:aret "arrest" species:7227 "Droso... 360 1.5e-30 1
UNIPROTKB|E2RGA8 - symbol:CELF3 "Uncharacterized protein"... 349 6.6e-30 1
WB|WBGene00006807 - symbol:unc-75 species:6239 "Caenorhab... 346 1.0e-29 1
UNIPROTKB|H9L0T2 - symbol:H9L0T2 "Uncharacterized protein... 317 5.0e-28 1
UNIPROTKB|A1L544 - symbol:TNRC4 "Trinucleotide repeat con... 297 8.6e-26 1
UNIPROTKB|F1MD42 - symbol:F1MD42 "Uncharacterized protein... 294 1.7e-23 1
UNIPROTKB|Q0V9L3 - symbol:celf4 "CUGBP Elav-like family m... 218 1.5e-22 2
UNIPROTKB|F1S8E8 - symbol:CELF5 "Uncharacterized protein"... 272 2.5e-21 1
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 237 1.3e-18 1
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 242 7.5e-18 1
ZFIN|ZDB-GENE-020419-22 - symbol:sf3b4 "splicing factor 3... 223 8.4e-18 2
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 235 1.8e-17 1
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 235 2.6e-17 1
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 235 2.6e-17 1
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 235 2.9e-17 1
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 235 2.9e-17 1
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 235 3.0e-17 1
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 235 3.0e-17 1
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 235 3.4e-17 1
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 235 3.4e-17 1
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 235 3.5e-17 1
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 235 3.6e-17 1
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp... 235 3.6e-17 1
MGI|MGI:107427 - symbol:Elavl4 "ELAV (embryonic lethal, a... 235 3.6e-17 1
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ... 233 3.9e-17 1
UNIPROTKB|E2R5T2 - symbol:SF3B4 "Uncharacterized protein"... 223 4.3e-17 2
UNIPROTKB|F1SDG0 - symbol:SF3B4 "Uncharacterized protein"... 223 4.3e-17 2
UNIPROTKB|F1MWR2 - symbol:SF3B4 "Uncharacterized protein"... 223 4.3e-17 2
UNIPROTKB|Q15427 - symbol:SF3B4 "Splicing factor 3B subun... 223 4.3e-17 2
MGI|MGI:109580 - symbol:Sf3b4 "splicing factor 3b, subuni... 223 4.3e-17 2
RGD|1309667 - symbol:Sf3b4 "splicing factor 3b, subunit 4... 223 4.3e-17 2
UNIPROTKB|F1NYP4 - symbol:CELF4 "Uncharacterized protein"... 195 4.6e-17 2
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 228 5.1e-17 1
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 228 5.1e-17 1
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 227 7.4e-17 1
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 232 8.5e-17 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 229 8.7e-17 1
WB|WBGene00001368 - symbol:exc-7 species:6239 "Caenorhabd... 234 9.8e-17 1
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 230 1.1e-16 1
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 230 1.1e-16 1
WARNING: Descriptions of 974 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 857 (306.7 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
Identities = 205/449 (45%), Positives = 257/449 (57%)
Query: 2 GGGFRPMSGPRS---GMNYXXXXXXXXXX-XXGQKRGF-SGRGGPSPDLVDGSSFAKLFV 56
GG F P GP G Y G + + SGRG S D + +++ KLF+
Sbjct: 68 GGRFHPYRGPSDHSGGGGYRSGGGGEYGEPGSGPRHRYGSGRGDHS-DHDNRNNYVKLFI 126
Query: 57 GSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQ 116
GSVP+TA E+D+RPLFEEHG+V+EVALIKD+KTG+QQGCCF+KYATSEEA+RAIRALHNQ
Sbjct: 127 GSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRALHNQ 186
Query: 117 HTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMR 176
+TLPG +GPIQVRYADGERER GA+E+KLFV SLNKQAT KE+EEIF+PYG VEDVY+M+
Sbjct: 187 YTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVEDVYIMK 246
Query: 177 DELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDXXXXXX 236
D ++QSRGCGFVK+S R+ ALAA++AL+G Y MRGC+QPL +RFADPKRPRPG+
Sbjct: 247 DGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKRPRPGESRGGPA 306
Query: 237 XXXXXXXXXXXXXXXXXXXXXXXXITDQ-IPQNAWHPMSPRNMGPLSNPGIRGFGNQLPP 295
+ +P ++WHP SPR+ N G N + P
Sbjct: 307 FGGPGFSPRSDAALVIRPTANLDEPRGRHMPPDSWHPSSPRSAPHQFNNF--GSDNPMAP 364
Query: 296 RSGDLGMPLNPGG--PADVPLPGLAVSST----SSALQQNFCQPESQAPSLG-QQISPLQ 348
+ + + P G S T SS + N P +Q LG QQI PLQ
Sbjct: 365 KGSTVTSTTDTATFRPQMFSGNGSLSSQTAVPSSSHMGMN-PPPMAQGHHLGGQQIPPLQ 423
Query: 349 KXXXXXXXXXXXXXXXXXXSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPAS 408
K + QLQ+P S Q+ L SG LP S
Sbjct: 424 KLPGLPQNFPVQLQNNQLGQPLQGPAQQ-IGQLQVP--QSMGPGSFGQNRL--SGQLPVS 478
Query: 409 QPQGQQIASSSTALPTPLNIKPQSSSLPG 437
QP QQ AS S A+ P + ++PG
Sbjct: 479 QPLMQQNASVS-AVQVPSAVSNSMQAIPG 506
Score = 154 (59.3 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 539 VSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFE 593
+ ++I ++ P +WTEHTSP+G+KYYYN +T SKW+KPEE L+E
Sbjct: 593 IPSNINTIPQQATSPAVPLTCNWTEHTSPEGFKYYYNSITRESKWDKPEEYVLYE 647
Score = 87 (35.7 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 656 QHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKN 695
Q QEL YTQL G+++ P+R QQG+Q+AQ+ WK+
Sbjct: 702 QMKQQELNYTQLQ--TPGAID-PSRIQQGIQSAQERAWKS 738
Score = 41 (19.5 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 47/182 (25%), Positives = 65/182 (35%)
Query: 265 IPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP--LNPGGPADVPLPG-LAVSS 321
+PQN P+ +N L P ++G Q+ G L +P + PG L G L VS
Sbjct: 428 LPQN--FPVQLQN-NQLGQP-LQGPAQQI----GQLQVPQSMGPGSFGQNRLSGQLPVSQ 479
Query: 322 TSSALQQNFCQPESQAPSL---GQQISPLQKXXXXXXXXXXXXXXXXXXSSYSHTQNSHL 378
+QQN Q PS Q P Q+ S + L
Sbjct: 480 P--LMQQNASVSAVQVPSAVSNSMQAIPGQQHLPSNVAPQMLQQPVQQMPSQAPQL---L 534
Query: 379 RQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGG 438
Q Q Q+S+ + Q + + L Q Q Q S+ P +P SS PG
Sbjct: 535 LQQQAALQSSYQSS--QQAIYQLQQQLQLMQQQQQ----SNLNHQQPTQGQPVQSSNPGA 588
Query: 439 TN 440
N
Sbjct: 589 PN 590
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 857 (306.7 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
Identities = 205/449 (45%), Positives = 257/449 (57%)
Query: 2 GGGFRPMSGPRS---GMNYXXXXXXXXXX-XXGQKRGF-SGRGGPSPDLVDGSSFAKLFV 56
GG F P GP G Y G + + SGRG S D + +++ KLF+
Sbjct: 68 GGRFHPYRGPSDHSGGGGYRSGGGGEYGEPGSGPRHRYGSGRGDHS-DHDNRNNYVKLFI 126
Query: 57 GSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQ 116
GSVP+TA E+D+RPLFEEHG+V+EVALIKD+KTG+QQGCCF+KYATSEEA+RAIRALHNQ
Sbjct: 127 GSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRALHNQ 186
Query: 117 HTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMR 176
+TLPG +GPIQVRYADGERER GA+E+KLFV SLNKQAT KE+EEIF+PYG VEDVY+M+
Sbjct: 187 YTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVEDVYIMK 246
Query: 177 DELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPGDXXXXXX 236
D ++QSRGCGFVK+S R+ ALAA++AL+G Y MRGC+QPL +RFADPKRPRPG+
Sbjct: 247 DGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKRPRPGESRGGPA 306
Query: 237 XXXXXXXXXXXXXXXXXXXXXXXXITDQ-IPQNAWHPMSPRNMGPLSNPGIRGFGNQLPP 295
+ +P ++WHP SPR+ N G N + P
Sbjct: 307 FGGPGFSPRSDAALVIRPTANLDEPRGRHMPPDSWHPSSPRSAPHQFNNF--GSDNPMAP 364
Query: 296 RSGDLGMPLNPGG--PADVPLPGLAVSST----SSALQQNFCQPESQAPSLG-QQISPLQ 348
+ + + P G S T SS + N P +Q LG QQI PLQ
Sbjct: 365 KGSTVTSTTDTATFRPQMFSGNGSLSSQTAVPSSSHMGMN-PPPMAQGHHLGGQQIPPLQ 423
Query: 349 KXXXXXXXXXXXXXXXXXXSSYSHTQNSHLRQLQIPGQTSFSQALPSQHLLGMSGNLPAS 408
K + QLQ+P S Q+ L SG LP S
Sbjct: 424 KLPGLPQNFPVQLQNNQLGQPLQGPAQQ-IGQLQVP--QSMGPGSFGQNRL--SGQLPVS 478
Query: 409 QPQGQQIASSSTALPTPLNIKPQSSSLPG 437
QP QQ AS S A+ P + ++PG
Sbjct: 479 QPLMQQNASVS-AVQVPSAVSNSMQAIPG 506
Score = 154 (59.3 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 539 VSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFE 593
+ ++I ++ P +WTEHTSP+G+KYYYN +T SKW+KPEE L+E
Sbjct: 593 IPSNINTIPQQATSPAVPLTCNWTEHTSPEGFKYYYNSITRESKWDKPEEYVLYE 647
Score = 87 (35.7 bits), Expect = 1.3e-107, Sum P(3) = 1.3e-107
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 656 QHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQDWMWKN 695
Q QEL YTQL G+++ P+R QQG+Q+AQ+ WK+
Sbjct: 702 QMKQQELNYTQLQ--TPGAID-PSRIQQGIQSAQERAWKS 738
Score = 41 (19.5 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 47/182 (25%), Positives = 65/182 (35%)
Query: 265 IPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMP--LNPGGPADVPLPG-LAVSS 321
+PQN P+ +N L P ++G Q+ G L +P + PG L G L VS
Sbjct: 428 LPQN--FPVQLQN-NQLGQP-LQGPAQQI----GQLQVPQSMGPGSFGQNRLSGQLPVSQ 479
Query: 322 TSSALQQNFCQPESQAPSL---GQQISPLQKXXXXXXXXXXXXXXXXXXSSYSHTQNSHL 378
+QQN Q PS Q P Q+ S + L
Sbjct: 480 P--LMQQNASVSAVQVPSAVSNSMQAIPGQQHLPSNVAPQMLQQPVQQMPSQAPQL---L 534
Query: 379 RQLQIPGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGG 438
Q Q Q+S+ + Q + + L Q Q Q S+ P +P SS PG
Sbjct: 535 LQQQAALQSSYQSS--QQAIYQLQQQLQLMQQQQQ----SNLNHQQPTQGQPVQSSNPGA 588
Query: 439 TN 440
N
Sbjct: 589 PN 590
>TAIR|locus:2065190 [details] [associations]
symbol:AT2G47310 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:BT015132 EMBL:BT015799 EMBL:AK229352 IPI:IPI00531580
RefSeq:NP_850472.1 UniGene:At.36378 ProteinModelPortal:Q6AWW6
SMR:Q6AWW6 PRIDE:Q6AWW6 EnsemblPlants:AT2G47310.1 GeneID:819344
KEGG:ath:AT2G47310 TAIR:At2g47310 HOGENOM:HOG000084673
InParanoid:Q6AWW6 OMA:RERIGFA PhylomeDB:Q6AWW6
ProtClustDB:CLSN2918289 Genevestigator:Q6AWW6 Uniprot:Q6AWW6
Length = 512
Score = 507 (183.5 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 105/199 (52%), Positives = 139/199 (69%)
Query: 38 RGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCF 97
R + D DGS AKL+V + KTA E DIR +FE++GNV E+ L KDK TG++ CF
Sbjct: 97 RSQSATDNADGS-IAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCF 155
Query: 98 IKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLG--AVEY----KLFVGSLN 151
IKY EE + AI AL Q T PG + P++VR+A+ ERER+G V+ KL+V LN
Sbjct: 156 IKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPKLYVRCLN 215
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRG 211
KQ T+ EV E+FS YG +ED+Y+ D++K RG FV++S ++MALAAI ALNG++T+RG
Sbjct: 216 KQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRG 275
Query: 212 CDQPLTVRFADPKRPRPGD 230
DQPL VRFADPK+PR G+
Sbjct: 276 SDQPLIVRFADPKKPRLGE 294
Score = 145 (56.1 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 36/112 (32%), Positives = 58/112 (51%)
Query: 120 PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL 179
P G ++ R + + KL+V ++K ATE ++ ++F YG V ++ L +D++
Sbjct: 87 PCGGSSLRKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKM 146
Query: 180 KQSRG--CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 229
R C F+KY + AAI AL +T G P+ VRFA+ +R R G
Sbjct: 147 TGERAAYC-FIKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIG 197
Score = 129 (50.5 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 552 QTVAPAKSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELTLFE 593
Q ++ W+EHT P+G KYY++C+T S WEKP+E +++E
Sbjct: 398 QNTVSSECDWSEHTCPNGNKYYFHCITCESTWEKPDEYSMYE 439
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 409 (149.0 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 80/175 (45%), Positives = 115/175 (65%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +PK E + LF+E V EV +IKDK T +GCCF+ + EEAD+ + A
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
HN+ TLPG +QV+YADGE ERL E+KLFVG L K +E EV+ +FS YG ++D+
Sbjct: 79 CHNKKTLPGANSLLQVKYADGELERL---EHKLFVGMLPKNVSEAEVQSLFSKYGTIKDL 135
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R + S+GC F+KY ++ A++A+ ++NG + M G PL V++AD +R R
Sbjct: 136 QILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERER 190
Score = 46 (21.3 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 18/71 (25%), Positives = 27/71 (38%)
Query: 277 NMGPLSNPGIRGFG-NQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPES 335
N G +N ++G + +PPR P+ PG P + A + P
Sbjct: 260 NQG--NNNALQGTSPDSVPPRLARRNFPMPPGNYMGSGYPAMRGHPFPFAYPRGIVSPRP 317
Query: 336 QAPSLGQQISP 346
+ S G ISP
Sbjct: 318 LSSSPGS-ISP 327
Score = 43 (20.2 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 538 PVSTSIGPAAPVSSQTVAPAKSSWTEHTSPDGYKYY-YN 575
P+S+S G +P S + SS + P+G + YN
Sbjct: 317 PLSSSPGSISPGMSTPLGIGLSSVVQTEGPEGANLFIYN 355
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 403 (146.9 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
Identities = 78/175 (44%), Positives = 116/175 (66%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +PK+ EE+I+ LF N+ V+LIK+K T + QGC F+ + EEADRAI
Sbjct: 4 KLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQ 63
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LHN G + +QV+YAD E+E+L + KLFVG L + E+++ E+F P+G VED+
Sbjct: 64 LHNSKKFQGVLNNLQVKYADSEQEKLAS---KLFVGMLPRSYEEEQIRELFEPHGVVEDI 120
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R +S+GCGF+K+ +R+ AL+AI LNG+ + G PL V+FAD ++ +
Sbjct: 121 CILRGPNSESKGCGFIKFDNRESALSAIATLNGM-KLDGSPNPLVVKFADTEKDK 174
Score = 158 (60.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
+KLFVG +P++ EE IR LFE HG V ++ +++ + + +GC FIK+ E A AI
Sbjct: 91 SKLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNS-ESKGCGFIKFDNRESALSAIA 149
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L N L G P+ V++AD E+++
Sbjct: 150 TL-NGMKLDGSPNPLVVKFADTEKDK 174
Score = 119 (46.9 bits), Expect = 0.00063, P = 0.00063
Identities = 39/142 (27%), Positives = 61/142 (42%)
Query: 1 MGGGFRPMSGPR-SGMNYXXXXXXXXXX--XXGQKRGFSG--RGGPSPDLVD---GSSFA 52
MG G GP +GMN G G G +GGP + + G +
Sbjct: 345 MGNGMNN-GGPMGNGMNGNGMNGNGMGGPMGNGMNNGMGGMNQGGPMGNKKNQSVGPQGS 403
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
LFV ++P + D+ LF+++G V+ + DK TG +G F+ Y A+ AI
Sbjct: 404 NLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAISN 463
Query: 113 LHNQHTLPGGVGPIQVRYADGE 134
LH Q + G + ++ G+
Sbjct: 464 LHGQ-MMAGKKLKVSLKQTSGQ 484
Score = 66 (28.3 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 134 ERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE-LKQSRGCGFVKYSH 192
+ + +G LFV ++ ++ ++ +F YG V + D+ S+G GFV Y +
Sbjct: 394 KNQSVGPQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDN 453
Query: 193 RDMALAAINALNG 205
A AI+ L+G
Sbjct: 454 PASANLAISNLHG 466
Score = 47 (21.6 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 266 PQNAWHPMSPRNMGPLSNPGIRG--FGNQLPPRSGDLGMPLNPGGP 309
P + N GP+ N G GN + G +G +N GGP
Sbjct: 310 PMGGMNGNGMNNGGPMGNGMNNGGPMGNGMN-NGGPMGNGMNNGGP 354
Score = 43 (20.2 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 277 NMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGP 309
N GP+ G+ G G G +G +N GGP
Sbjct: 307 NNGPMG--GMNGNGMN---NGGPMGNGMNNGGP 334
>UNIPROTKB|A6H776 [details] [associations]
symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
Length = 475
Score = 403 (146.9 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 87/199 (43%), Positives = 116/199 (58%)
Query: 30 GQKRGFS-GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKK 88
G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++KD+
Sbjct: 31 GHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF 90
Query: 89 TGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVG 148
TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E G + KLFVG
Sbjct: 91 TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR--G--DRKLFVG 146
Query: 149 SLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYT 208
LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+G T
Sbjct: 147 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 206
Query: 209 MRGCDQPLTVRFADPKRPR 227
M G L V+FAD + R
Sbjct: 207 MPGASSSLVVKFADTDKER 225
Score = 39 (18.8 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 663 GYTQLPPVAAGSVNNPTRFQQGL 685
G+T LPP A G F G+
Sbjct: 329 GFTGLPPQANGQPAAEAVFANGI 351
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 403 (146.9 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 87/199 (43%), Positives = 116/199 (58%)
Query: 30 GQKRGFS-GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKK 88
G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++KD+
Sbjct: 31 GHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF 90
Query: 89 TGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVG 148
TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E G + KLFVG
Sbjct: 91 TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR--G--DRKLFVG 146
Query: 149 SLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYT 208
LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+G T
Sbjct: 147 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 206
Query: 209 MRGCDQPLTVRFADPKRPR 227
M G L V+FAD + R
Sbjct: 207 MPGASSSLVVKFADTDKER 225
Score = 39 (18.8 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 663 GYTQLPPVAAGSVNNPTRFQQGL 685
G+T LPP A G F G+
Sbjct: 329 GFTGLPPQANGQPAAEAVFANGI 351
>UNIPROTKB|Q4R535 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
"Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
Length = 474
Score = 403 (146.9 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 87/199 (43%), Positives = 116/199 (58%)
Query: 30 GQKRGFS-GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKK 88
G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++KD+
Sbjct: 31 GHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF 90
Query: 89 TGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVG 148
TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E G + KLFVG
Sbjct: 91 TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR--G--DRKLFVG 146
Query: 149 SLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYT 208
LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL+G T
Sbjct: 147 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 206
Query: 209 MRGCDQPLTVRFADPKRPR 227
M G L V+FAD + R
Sbjct: 207 MPGASSSLVVKFADTDKER 225
Score = 39 (18.8 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 663 GYTQLPPVAAGSVNNPTRFQQGL 685
G+T LPP A G F G+
Sbjct: 329 GFTGLPPQANGQPAAEAVFANGI 351
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 84/190 (44%), Positives = 121/190 (63%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
+ ++ KLFVG VPK E + LF E V EV +IK+K T +GCCF+ T
Sbjct: 4 ETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTR 63
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV------EYKLFVGSLNKQATEK 157
E+AD+ I + HN+ TLPG P+QV+YADGE ERL + E+KLFVG L K +E
Sbjct: 64 EDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSET 123
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
EV+ +FS YG ++D+ ++R L+ S+GC F+KY ++ A+AA+ ALNG + M G + PL
Sbjct: 124 EVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLI 183
Query: 218 VRFADPKRPR 227
V++AD ++ R
Sbjct: 184 VKWADTEKER 193
Score = 119 (46.9 bits), Expect = 0.00053, P = 0.00053
Identities = 33/120 (27%), Positives = 58/120 (48%)
Query: 34 GFSGRGG--PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQ 91
G S G PS +G + A LF+ ++P+ ++++ F+ G V+ + DK TG
Sbjct: 319 GISNNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGI 378
Query: 92 QQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLN 151
+ FI Y + A AI + N L G +Q++ +G++++ + LF G LN
Sbjct: 379 SKCFGFISYDSQAAAQNAINTM-NGCQLSGKKLKVQLKRDNGQQQQQQQSKNPLFNGLLN 437
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 394 (143.8 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 88/207 (42%), Positives = 118/207 (57%)
Query: 30 GQKRGFS-GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKK 88
G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++KD+
Sbjct: 31 GHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF 90
Query: 89 TGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV------- 141
TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 91 TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLRQPPS 149
Query: 142 -EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAI 200
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAI
Sbjct: 150 QDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAI 209
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPR 227
NAL+G TM G L V+FAD + R
Sbjct: 210 NALHGSQTMPGASSSLVVKFADTDKER 236
Score = 39 (18.8 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 663 GYTQLPPVAAGSVNNPTRFQQGL 685
G+T LPP A G F G+
Sbjct: 340 GFTGLPPQANGQPAAEAVFANGI 362
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 394 (143.8 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 88/207 (42%), Positives = 118/207 (57%)
Query: 30 GQKRGFS-GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKK 88
G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++KD+
Sbjct: 31 GHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF 90
Query: 89 TGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV------- 141
TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 91 TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLRQPPS 149
Query: 142 -EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAI 200
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAI
Sbjct: 150 QDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAI 209
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPR 227
NAL+G TM G L V+FAD + R
Sbjct: 210 NALHGSQTMPGASSSLVVKFADTDKER 236
Score = 39 (18.8 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 663 GYTQLPPVAAGSVNNPTRFQQGL 685
G+T LPP A G F G+
Sbjct: 340 GFTGLPPQANGQPAAEAVFANGI 362
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 394 (143.8 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 88/207 (42%), Positives = 118/207 (57%)
Query: 30 GQKRGFS-GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKK 88
G G S G PS + KLF+G +P+ E+D++PLFEE G + E+ ++KD+
Sbjct: 31 GHMNGLSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF 90
Query: 89 TGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV------- 141
TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R G+
Sbjct: 91 TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSE-SRGGSSCLRQPPS 149
Query: 142 -EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAI 200
+ KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAI
Sbjct: 150 QDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAI 209
Query: 201 NALNGIYTMRGCDQPLTVRFADPKRPR 227
NAL+G TM G L V+FAD + R
Sbjct: 210 NALHGSQTMPGASSSLVVKFADTDKER 236
Score = 39 (18.8 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 663 GYTQLPPVAAGSVNNPTRFQQGL 685
G+T LPP A G F G+
Sbjct: 340 GFTGLPPQANGQPAAEAVFANGI 362
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 388 (141.6 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 77/175 (44%), Positives = 110/175 (62%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG L KQ ++ +V ++F P+G +E+
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSE----GRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEEC 123
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKY A AAI+AL+G T+ G L V+FAD ++ R
Sbjct: 124 TVLRGPDGASKGCAFVKYQSNAEAQAAISALHGSRTLPGASSSLVVKFADTEKER 178
Score = 183 (69.5 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 36/91 (39%), Positives = 54/91 (59%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+G KLFVG + K + D+R +FE G++ E +++ G +GC F+KY ++ EA
Sbjct: 89 EGRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPD-GASKGCAFVKYQSNAEA 147
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERER 137
AI ALH TLPG + V++AD E+ER
Sbjct: 148 QAAISALHGSRTLPGASSSLVVKFADTEKER 178
Score = 93 (37.8 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 135 RERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHR 193
++R G +F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + +
Sbjct: 359 QQREGPEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNP 418
Query: 194 DMALAAINALNG 205
A AAI A+NG
Sbjct: 419 ASAQAAIQAMNG 430
Score = 44 (20.5 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 642 HPFSSSYQA--PVVRGQHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQ 689
HP+ + A P+ + Q YT P A G V P Q L A Q
Sbjct: 304 HPYQAQSPALDPLQQAYTGMQH--YTATYPAAYGLVGQPFPHQPTLVAQQ 351
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 376 (137.4 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 82/195 (42%), Positives = 114/195 (58%)
Query: 34 GFSGRG-GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
G SG GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG
Sbjct: 28 GMSGLNPGPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLH 86
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK 152
+GC F+ Y + A +A ALH Q TLPG PIQV+ A E G + KLFVG L K
Sbjct: 87 KGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR--GE-DRKLFVGMLGK 143
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
Q E++V +F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G
Sbjct: 144 QQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGA 203
Query: 213 DQPLTVRFADPKRPR 227
L V+ AD R R
Sbjct: 204 SSSLVVKLADTDRER 218
Score = 52 (23.4 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 20/72 (27%), Positives = 29/72 (40%)
Query: 274 SPRNMGPLSNPG------IRGFGNQLPPRSGDLGMPL--NPG-GPADVPLPGLAVSSTSS 324
SP GP + PG + GFG+ P +G G N G P P ++++
Sbjct: 297 SPGGNGPGALPGLPAPMGVNGFGSLTPQSNGQPGSDTLYNNGVSPYPAAYPSAYAPASTA 356
Query: 325 ALQQNFCQPESQ 336
QQ P+ Q
Sbjct: 357 FSQQPSALPQQQ 368
Score = 44 (20.5 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 309 PADVPLPGLAVSSTSSALQ-QNFCQPESQAPSLGQ 342
PA +PL G + T++ LQ Q +Q P LGQ
Sbjct: 235 PAPLPL-GACGAYTTAILQHQAALLAAAQGPGLGQ 268
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 376 (137.4 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 82/195 (42%), Positives = 114/195 (58%)
Query: 34 GFSGRG-GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
G SG GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG
Sbjct: 28 GMSGLNPGPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLH 86
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK 152
+GC F+ Y + A +A ALH Q TLPG PIQV+ A E G + KLFVG L K
Sbjct: 87 KGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR--GE-DRKLFVGMLGK 143
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
Q E++V +F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G
Sbjct: 144 QQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGA 203
Query: 213 DQPLTVRFADPKRPR 227
L V+ AD R R
Sbjct: 204 SSSLVVKLADTDRER 218
Score = 49 (22.3 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 23/73 (31%), Positives = 30/73 (41%)
Query: 274 SPRNMGPLSNPG------IRGFGNQLPPRSGDLGMP--LNPG-GPADVPLPGLAVSSTSS 324
SP GP + PG + GFG+ P +G G N G P P A + S+
Sbjct: 297 SPSGNGPGALPGLPAPMGVNGFGSLNPQTNGQPGSDSLYNNGLSPYPAAYPS-AYAPVST 355
Query: 325 AL-QQNFCQPESQ 336
A QQ P+ Q
Sbjct: 356 AFPQQPSALPQQQ 368
Score = 44 (20.5 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 309 PADVPLPGLAVSSTSSALQ-QNFCQPESQAPSLGQ 342
PA +PL G + T++ LQ Q +Q P LGQ
Sbjct: 235 PAPLPL-GACGAYTTAILQHQAALLAAAQGPGLGQ 268
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 377 (137.8 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 82/195 (42%), Positives = 115/195 (58%)
Query: 34 GFSGRG-GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
G SG GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG
Sbjct: 28 GMSGLNPGPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLH 86
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK 152
+GC F+ Y + A +A ALH Q TLPG PIQV+ A E G + KLFVG L K
Sbjct: 87 KGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR--GE-DRKLFVGMLGK 143
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
Q E++V +F P+G +E+ ++R S+GC FVK+ + A AAI +L+G TM G
Sbjct: 144 QQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGA 203
Query: 213 DQPLTVRFADPKRPR 227
L V+ AD R R
Sbjct: 204 SSSLVVKLADTDRER 218
Score = 45 (20.9 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 275 PRNMGPLSNP-GIRGFGNQLPPRSGDLGMP--LNPG-GPADVPLPGLA 318
P + L P G+ GFG P +G G N G P PG+A
Sbjct: 304 PGTLPGLPAPIGVNGFGPLTPQTNGQPGSDSLYNNGLSPYPAQSPGVA 351
Score = 39 (18.8 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 309 PADVPLPGLAVSSTSSALQ-QNFCQPESQAPSLG 341
PA +PL G + T++ LQ Q +Q P LG
Sbjct: 235 PAPLPL-GACGAYTTAILQHQAALLAAAQGPGLG 267
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 377 (137.8 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 82/195 (42%), Positives = 115/195 (58%)
Query: 34 GFSGRG-GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
G SG GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG
Sbjct: 28 GMSGLNPGPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLH 86
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK 152
+GC F+ Y + A +A ALH Q TLPG PIQV+ A E G + KLFVG L K
Sbjct: 87 KGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR--GE-DRKLFVGMLGK 143
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
Q E++V +F P+G +E+ ++R S+GC FVK+ + A AAI +L+G TM G
Sbjct: 144 QQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGA 203
Query: 213 DQPLTVRFADPKRPR 227
L V+ AD R R
Sbjct: 204 SSSLVVKLADTDRER 218
Score = 45 (20.9 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 275 PRNMGPLSNP-GIRGFGNQLPPRSGDLGMP--LNPG-GPADVPLPGLA 318
P + L P G+ GFG P +G G N G P PG+A
Sbjct: 304 PGTLPGLPAPIGVNGFGPLTPQTNGQPGSDSLYNNGLSPYPAQSPGVA 351
Score = 39 (18.8 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 309 PADVPLPGLAVSSTSSALQ-QNFCQPESQAPSLG 341
PA +PL G + T++ LQ Q +Q P LG
Sbjct: 235 PAPLPL-GACGAYTTAILQHQAALLAAAQGPGLG 267
>UNIPROTKB|Q96J87 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
Ensembl:ENST00000287202 Ensembl:ENST00000395258
Ensembl:ENST00000543764 Ensembl:ENST00000567083
Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
Genevestigator:Q96J87 Uniprot:Q96J87
Length = 481
Score = 376 (137.4 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 82/195 (42%), Positives = 114/195 (58%)
Query: 34 GFSGRG-GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
G SG GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG
Sbjct: 28 GMSGLNPGPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLH 86
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNK 152
+GC F+ Y + A +A ALH Q TLPG PIQV+ A E G + KLFVG L K
Sbjct: 87 KGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPAASEGR--GE-DRKLFVGMLGK 143
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
Q E++V +F P+G +E+ ++R S+GC FVK+ + A AAI L+G TM G
Sbjct: 144 QQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGA 203
Query: 213 DQPLTVRFADPKRPR 227
L V+ AD R R
Sbjct: 204 SSSLVVKLADTDRER 218
Score = 46 (21.3 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 274 SPRNMGPLSNPG------IRGFGNQLPPRSGDLGMPL--NPG-GPADVPLPGLA 318
SP GP + PG + GFG P +G G N G P PG+A
Sbjct: 297 SPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSPGVA 350
Score = 39 (18.8 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 309 PADVPLPGLAVSSTSSALQ-QNFCQPESQAPSLG 341
PA +PL G + T++ LQ Q +Q P LG
Sbjct: 235 PAPLPL-GACGAYTTAILQHQAALLAAAQGPGLG 267
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 377 (137.8 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 76/175 (43%), Positives = 109/175 (62%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG L KQ T+++V +F +G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR--GE-DRKLFVGMLGKQQTDEDVRRMFETFGNIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAINAL+G T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKER 179
Score = 39 (18.8 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 291 NQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQA 337
N + SG P P L V+ S+ Q+ QP S+A
Sbjct: 261 NSITSSSGTSTPPTLTATPVSAIPATLGVNGYSAVPTQSTVQPSSEA 307
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 81/188 (43%), Positives = 114/188 (60%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
G PD + KLFVG +P+ E+D++PLFE+ G + E+ ++KD TG +GC F+
Sbjct: 33 GGQPDGMKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLT 92
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ +E++V
Sbjct: 93 YCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQQSEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G L V+
Sbjct: 151 LRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 210
Query: 220 FADPKRPR 227
FAD + R
Sbjct: 211 FADTDKER 218
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 81/188 (43%), Positives = 114/188 (60%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
G PD + KLFVG +P+ E+D++PLFE+ G + E+ ++KD TG +GC F+
Sbjct: 33 GGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLT 92
Query: 100 YATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEV 159
Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ +E++V
Sbjct: 93 YCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQQSEEDV 150
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G L V+
Sbjct: 151 LRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 210
Query: 220 FADPKRPR 227
FAD + R
Sbjct: 211 FADTDKER 218
>RGD|1565016 [details] [associations]
symbol:Celf5 "CUGBP, Elav-like family member 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565016 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13207 GeneTree:ENSGT00560000076837 OrthoDB:EOG4RJG30 CTD:60680
IPI:IPI00914219 RefSeq:NP_001129075.1 UniGene:Rn.12319
ProteinModelPortal:D4A8V0 Ensembl:ENSRNOT00000061219 GeneID:314647
KEGG:rno:314647 UCSC:RGD:1565016 NextBio:668034 Uniprot:D4A8V0
Length = 395
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 78/175 (44%), Positives = 110/175 (62%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++PLFE+ G + E+ ++KD TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLHEQDLKPLFEQFGRIYELTVLKDPHTGVHKGCAFLTYCARDSAIKAQTA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG LNKQ +E++V +F P+G +++
Sbjct: 68 LHEQKTLPGMARPIQVKPADSENR--GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDEC 125
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+S A AAI+AL+G TM G L V+FAD + R
Sbjct: 126 TVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKER 180
Score = 172 (65.6 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 41/119 (34%), Positives = 61/119 (51%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
G KLFVG + K EED+ LF+ G + E +++ G +GC F+K+++ EA
Sbjct: 92 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQ 150
Query: 108 RAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
AI ALH T+PG + V++AD ++ER + VG L + FSPY
Sbjct: 151 AAIHALHGSQTMPGASSSLVVKFADTDKERT-LRRMQQMVGQLGILTPSLTLP--FSPY 206
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 81/175 (46%), Positives = 108/175 (61%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D+RPLFEE G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 48 KLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTA 107
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG LNKQ E +V +F +G +E+
Sbjct: 108 LHEQKTLPGMNRPIQVKPADSESR--GE-DRKLFVGMLNKQQCEDDVRRLFESFGSIEEC 164
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVKYS A AAI+AL+G TM G L V+FAD + R
Sbjct: 165 TILRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQTMPGASSSLVVKFADTDKER 219
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 77/175 (44%), Positives = 110/175 (62%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG L KQ T+++V +F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR--GE-DRKLFVGMLGKQQTDEDVRRMFEPFGNIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAINAL+G T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKER 179
>FB|FBgn0262475 [details] [associations]
symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
Uniprot:Q0E8R3
Length = 893
Score = 375 (137.1 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 80/189 (42%), Positives = 116/189 (61%)
Query: 42 SPDLVDGSSFA---KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFI 98
SPD + A K+FVG +PKT E +R +FE+ G V + +++DK T +GCCF+
Sbjct: 282 SPDSIKDQPDADNIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFV 341
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKE 158
Y T + A RA ALHN TL G PIQ++ AD E E KLFVG LNK+ TE +
Sbjct: 342 TYYTRKAALRAQDALHNIKTLDGMHHPIQMKPADSENRN----ERKLFVGMLNKKYTEAD 397
Query: 159 VEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218
V ++F+ +G +E+ ++RD+ QS+GC FV ++ + A+ AI AL+ TM GC PL V
Sbjct: 398 VRQLFTGHGTIEECTVLRDQAGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVV 457
Query: 219 RFADPKRPR 227
+FAD ++ +
Sbjct: 458 KFADTQKEK 466
Score = 62 (26.9 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 45/177 (25%), Positives = 58/177 (32%)
Query: 268 NAWHPMSPRNMGPLS--NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSA 325
N HP P N S +PGI G + + NP G A P P S+ +A
Sbjct: 603 NFHHP--PENSAHHSQHSPGIGG-ASAASLSAAAATAASNPLGGAPPPTPTPTSSAGHAA 659
Query: 326 LQQNFCQPESQAPSLGQQIS-PLQKXXXXXXXXXXXXXXXXXXSSY-SHTQNSHLRQLQI 383
P +L ++ P SS S N L
Sbjct: 660 GAGLLAAPSMSMQNLVALLATPTAHHQLSLHHSSSSSGHNNGNSSATSGLHNQRLTYAAA 719
Query: 384 PGQTSFSQALPSQHLLGMSGNLPASQPQGQQIASSSTALPTPLNIKPQSSSLPGGTN 440
P S L+G + P +QP G + + AL P P SSSL G TN
Sbjct: 720 PPPPPISTTYNMPQLIGHTAT-P-TQPGGSSQSLTFNALWPPNAADPYSSSLSGLTN 774
>UNIPROTKB|F1NXF6 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 GO:GO:0000381
EMBL:AADN02051058 EMBL:AADN02051059 IPI:IPI00819127
Ensembl:ENSGALT00000040113 OMA:PIHEINI Uniprot:F1NXF6
Length = 476
Score = 354 (129.7 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 74/179 (41%), Positives = 105/179 (58%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E D++PLFEE G + E+ ++KD+ TG +GC F+ Y + A +A A
Sbjct: 49 KLFVGQIPRNLEESDLKPLFEEFGRIYELTVLKDRFTGMHKGCAFLTYCARDSALKAQSA 108
Query: 113 LHNQHTLPG-GVGPIQVR---YADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR 168
LH Q TLPG G R + + L + KLFVG L KQ +E +V +F P+G+
Sbjct: 109 LHEQKTLPGVSDGRELGRGLGWPPADSSALPPEDRKLFVGMLGKQQSEDDVRRLFEPFGQ 168
Query: 169 VEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+E+ ++R S+GC FVKYS A AAI++L+G TM G L V+FAD + R
Sbjct: 169 IEECTILRGPDGASKGCAFVKYSSHAEAQAAISSLHGSQTMPGASSSLVVKFADTDKER 227
Score = 42 (19.8 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 657 HNAQELGYTQLP----PVAAGSVNNPTRFQQGLQA 687
H QE G +L P S +NPT Q +QA
Sbjct: 417 HLPQEFGDAELTQMFLPFGFVSFDNPTSAQAAIQA 451
Score = 39 (18.8 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 663 GYTQLPPVAAGSVNNPTRFQQGL 685
G++ LPP G + T + G+
Sbjct: 330 GFSPLPPQTNGQPTSETIYTNGI 352
>MGI|MGI:1342295 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
Uniprot:P28659
Length = 486
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 77/188 (40%), Positives = 118/188 (62%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKY 100
PD D + K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ +
Sbjct: 8 PDQPDLDAI-KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTF 66
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEV 159
T + A A ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++
Sbjct: 67 YTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDI 124
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+FS +G++E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+
Sbjct: 125 RVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVK 184
Query: 220 FADPKRPR 227
FAD ++ +
Sbjct: 185 FADTQKDK 192
>RGD|1307721 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0031369 "translation initiation
factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
"BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 77/188 (40%), Positives = 118/188 (62%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKY 100
PD D + K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ +
Sbjct: 8 PDQPDLDAI-KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTF 66
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEV 159
T + A A ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++
Sbjct: 67 YTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDI 124
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+FS +G++E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+
Sbjct: 125 RVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVK 184
Query: 220 FADPKRPR 227
FAD ++ +
Sbjct: 185 FADTQKDK 192
>UNIPROTKB|Q4QQT3 [details] [associations]
symbol:Celf1 "CUGBP Elav-like family member 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 77/188 (40%), Positives = 118/188 (62%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKY 100
PD D + K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ +
Sbjct: 8 PDQPDLDAI-KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTF 66
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEV 159
T + A A ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++
Sbjct: 67 YTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDI 124
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+FS +G++E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+
Sbjct: 125 RVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVK 184
Query: 220 FADPKRPR 227
FAD ++ +
Sbjct: 185 FADTQKDK 192
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 379 (138.5 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 78/188 (41%), Positives = 117/188 (62%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKY 100
PD D S K+FVG +P+T E+ +R LFE +G V E+ +++D+ Q +GCCF+ Y
Sbjct: 46 PDQPDIDSI-KMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTY 104
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEV 159
T + A A ALHN LPG PIQ++ AD E+ AVE KLFVG ++K+ E ++
Sbjct: 105 YTRKSALEAQNALHNMKILPGMHHPIQMKPADSEKNN--AVEDRKLFVGMISKKCNENDI 162
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+FSPYG++E+ ++R SRGC FV ++ R MA +AI +++ TM GC P+ V+
Sbjct: 163 RLMFSPYGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIVVK 222
Query: 220 FADPKRPR 227
FAD ++ +
Sbjct: 223 FADTQKDK 230
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 77/188 (40%), Positives = 118/188 (62%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKY 100
PD D + K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ +
Sbjct: 8 PDQPDLDAI-KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 66
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEV 159
T + A A ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++
Sbjct: 67 YTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDI 124
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+FS +G++E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+
Sbjct: 125 RVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 184
Query: 220 FADPKRPR 227
FAD ++ +
Sbjct: 185 FADTQKDK 192
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 77/188 (40%), Positives = 118/188 (62%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKY 100
PD D + K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ +
Sbjct: 8 PDQPDLDAI-KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 66
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEV 159
T + A A ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++
Sbjct: 67 YTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDI 124
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+FS +G++E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+
Sbjct: 125 RVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 184
Query: 220 FADPKRPR 227
FAD ++ +
Sbjct: 185 FADTQKDK 192
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 375 (137.1 bits), Expect = 1.5e-34, P = 1.5e-34
Identities = 77/188 (40%), Positives = 118/188 (62%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKY 100
PD D + K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ +
Sbjct: 35 PDQPDLDAI-KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 93
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEV 159
T + A A ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++
Sbjct: 94 YTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDI 151
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+FS +G++E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+
Sbjct: 152 RVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 211
Query: 220 FADPKRPR 227
FAD ++ +
Sbjct: 212 FADTQKDK 219
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 375 (137.1 bits), Expect = 1.8e-34, P = 1.8e-34
Identities = 77/188 (40%), Positives = 118/188 (62%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKY 100
PD D + K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ +
Sbjct: 35 PDQPDLDAI-KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 93
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEV 159
T + A A ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++
Sbjct: 94 YTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDI 151
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+FS +G++E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+
Sbjct: 152 RVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 211
Query: 220 FADPKRPR 227
FAD ++ +
Sbjct: 212 FADTQKDK 219
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 75/175 (42%), Positives = 109/175 (62%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR--GE-DRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 75/175 (42%), Positives = 109/175 (62%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR--GE-DRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 75/175 (42%), Positives = 109/175 (62%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR--GE-DRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 75/175 (42%), Positives = 109/175 (62%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR--GE-DRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 76/188 (40%), Positives = 118/188 (62%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKY 100
PD D + K+FVG VP++ E+D+R LFE++G V E+ +++D+ Q +GCCF+ +
Sbjct: 8 PDQPDLDAI-KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 66
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEV 159
T + A A ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ E ++
Sbjct: 67 YTRKAALEAQNALHNMKILPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCNENDI 124
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+FSP+G++E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+
Sbjct: 125 RVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVK 184
Query: 220 FADPKRPR 227
FAD ++ +
Sbjct: 185 FADTQKDK 192
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 76/188 (40%), Positives = 118/188 (62%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKY 100
PD D + K+FVG VP++ E+D+R LFE++G V E+ +++D+ Q +GCCF+ +
Sbjct: 8 PDQPDLDAI-KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 66
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEV 159
T + A A ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ E ++
Sbjct: 67 YTRKAALEAQNALHNMKILPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCNENDI 124
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+FSP+G++E+ ++R SRGC FV ++ R MA AI A++ TM GC P+ V+
Sbjct: 125 RVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVK 184
Query: 220 FADPKRPR 227
FAD ++ +
Sbjct: 185 FADTQKDK 192
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 75/175 (42%), Positives = 109/175 (62%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR--G--DRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 123
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 124 TVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 178
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 334 (122.6 bits), Expect = 2.1e-33, Sum P(2) = 2.1e-33
Identities = 69/157 (43%), Positives = 98/157 (62%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ A E G + KLFVG L KQ E++V +F P+G +E+
Sbjct: 68 LHEQKTLPGMNRPIQVKPAASEGR--GE-DRKLFVGMLGKQQGEEDVRRLFQPFGHIEEC 124
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209
++R S+GC FVK+ + A AAI +L+G TM
Sbjct: 125 TVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTM 161
Score = 131 (51.2 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 26/77 (33%), Positives = 49/77 (63%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINA 202
KLFVG + + E++++ +F +GR+ ++ +++D L +GC F+ Y RD AL A +A
Sbjct: 8 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 67
Query: 203 LNGIYTMRGCDQPLTVR 219
L+ T+ G ++P+ V+
Sbjct: 68 LHEQKTLPGMNRPIQVK 84
Score = 51 (23.0 bits), Expect = 2.1e-33, Sum P(2) = 2.1e-33
Identities = 23/82 (28%), Positives = 33/82 (40%)
Query: 275 PRNMGPLSNP-GIRGFGNQLPPRSGDLGMPL--NPG-GPADVPLPGLA--VSSTSSALQQ 328
P ++ L P G+ GFG P +G G N G P PG+A + + +
Sbjct: 250 PGSLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSPGVADPLQQAYAGMHH 309
Query: 329 NFCQPESQAP---SLGQQISPL 347
P + AP + QQ S L
Sbjct: 310 YAAYPSAYAPVSTAFPQQSSAL 331
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 376 (137.4 bits), Expect = 2.2e-33, P = 2.2e-33
Identities = 80/184 (43%), Positives = 112/184 (60%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFE+ G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 137 KLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNA 196
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG LNKQ TE++V +F PYG +E+
Sbjct: 197 LHEQKTLPGMTRPIQVKPADSESR--GE-DRKLFVGMLNKQQTEEDVYRLFEPYGVIEEC 253
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTM---------RGCDQPLTVRFADP 223
++R S+GC FVK+S A +AI+AL+G TM +G L V+FAD
Sbjct: 254 TVLRGPDGNSKGCAFVKFSTHAEAQSAISALHGSQTMPTGSDSLLPQGASSSLVVKFADT 313
Query: 224 KRPR 227
+ R
Sbjct: 314 DKER 317
>UNIPROTKB|E1C045 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 IPI:IPI00587312 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 ProteinModelPortal:E1C045
Ensembl:ENSGALT00000010858 ArrayExpress:E1C045 Uniprot:E1C045
Length = 488
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 74/190 (38%), Positives = 118/190 (62%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
>UNIPROTKB|F1NZY6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000076837 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00971429 Ensembl:ENSGALT00000010859
ArrayExpress:F1NZY6 Uniprot:F1NZY6
Length = 484
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 74/190 (38%), Positives = 118/190 (62%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
>UNIPROTKB|F1P674 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 GeneTree:ENSGT00560000076837 CTD:10659
OMA:TMRNEEL EMBL:AAEX03001288 EMBL:AAEX03001289 EMBL:AAEX03001290
RefSeq:XP_003433765.1 ProteinModelPortal:F1P674
Ensembl:ENSCAFT00000008021 GeneID:607310 KEGG:cfa:607310
Uniprot:F1P674
Length = 488
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 74/190 (38%), Positives = 118/190 (62%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
>UNIPROTKB|Q7T2T1 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 EMBL:AY288985
EMBL:AY288986 IPI:IPI00574339 IPI:IPI00587312 RefSeq:NP_989591.1
UniGene:Gga.4919 ProteinModelPortal:Q7T2T1 SMR:Q7T2T1 STRING:Q7T2T1
PRIDE:Q7T2T1 GeneID:374111 KEGG:gga:374111 CTD:10659
InParanoid:Q7T2T1 NextBio:20813628 Uniprot:Q7T2T1
Length = 484
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 74/190 (38%), Positives = 117/190 (61%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KTFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
>UNIPROTKB|F1P017 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00820413 Ensembl:ENSGALT00000040039
ArrayExpress:F1P017 Uniprot:F1P017
Length = 494
Score = 361 (132.1 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 74/190 (38%), Positives = 118/190 (62%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 17 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 70
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 71 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 128
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 129 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 188
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 189 VKFADTQKDK 198
>UNIPROTKB|Q5VZZ6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
EMBL:AL157704 EMBL:AL136320 IPI:IPI00845480 UniGene:Hs.309288
HGNC:HGNC:2550 EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:Q5VZZ6
Ensembl:ENST00000354897 Uniprot:Q5VZZ6
Length = 498
Score = 361 (132.1 bits), Expect = 2.8e-32, P = 2.8e-32
Identities = 74/190 (38%), Positives = 118/190 (62%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 11 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 122
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 123 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 182
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 183 VKFADTQKDK 192
>UNIPROTKB|O95319 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008016 "regulation of heart contraction"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0008016 GO:GO:0003723
GO:GO:0006396 EMBL:CH471072 EMBL:AC026887 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 CTD:10659
EMBL:AF090694 EMBL:AF090693 EMBL:AF036956 EMBL:U69546 EMBL:AF295068
EMBL:AF295063 EMBL:AF295064 EMBL:AF295065 EMBL:AF295066
EMBL:AF295067 EMBL:AF314199 EMBL:AF432906 EMBL:AK316354
EMBL:AL157704 EMBL:AL136320 EMBL:BC036391 IPI:IPI00410277
IPI:IPI00607544 IPI:IPI00845479 IPI:IPI00845480 IPI:IPI00853320
RefSeq:NP_001020247.1 RefSeq:NP_001020248.1 RefSeq:NP_001077060.1
RefSeq:NP_006552.3 UniGene:Hs.309288 ProteinModelPortal:O95319
SMR:O95319 IntAct:O95319 MINT:MINT-2868664 STRING:O95319
PhosphoSite:O95319 UCD-2DPAGE:O95319 PaxDb:O95319 PRIDE:O95319
Ensembl:ENST00000315874 Ensembl:ENST00000354440
Ensembl:ENST00000379261 Ensembl:ENST00000399850
Ensembl:ENST00000416382 Ensembl:ENST00000417956
Ensembl:ENST00000427450 GeneID:10659 KEGG:hsa:10659 UCSC:uc001iki.4
UCSC:uc001ikk.2 UCSC:uc001iko.4 UCSC:uc001ikp.4 UCSC:uc010qbj.1
GeneCards:GC10P011049 HGNC:HGNC:2550 MIM:602538 neXtProt:NX_O95319
PharmGKB:PA27046 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
ArrayExpress:O95319 Bgee:O95319 CleanEx:HS_CUGBP2
Genevestigator:O95319 Uniprot:O95319
Length = 508
Score = 361 (132.1 bits), Expect = 6.2e-32, P = 6.2e-32
Identities = 74/190 (38%), Positives = 118/190 (62%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 35 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 88
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 89 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 146
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 147 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 207 VKFADTQKDK 216
>MGI|MGI:1338822 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006376
"mRNA splice site selection" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1338822 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 GO:GO:0006376
GeneTree:ENSGT00560000076837 CTD:10659 ChiTaRS:CELF2 EMBL:AF090696
EMBL:AF090697 EMBL:Y18298 EMBL:AK137292 EMBL:AK151818 EMBL:AK152628
EMBL:AK153267 EMBL:AK160861 EMBL:AK161349 EMBL:AK164914
EMBL:AL929240 EMBL:AL845492 EMBL:AL845515 EMBL:BC026856
IPI:IPI00129146 IPI:IPI00651950 IPI:IPI00750780 IPI:IPI00751703
IPI:IPI00756899 IPI:IPI00853748 IPI:IPI00853844 IPI:IPI00853921
IPI:IPI00854018 IPI:IPI00854021 RefSeq:NP_001103698.1
RefSeq:NP_001103699.1 RefSeq:NP_001103700.1 RefSeq:NP_001103701.1
RefSeq:NP_001103702.1 RefSeq:NP_001153764.1 RefSeq:NP_001153765.1
RefSeq:NP_034290.2 UniGene:Mm.398543 ProteinModelPortal:Q9Z0H4
SMR:Q9Z0H4 STRING:Q9Z0H4 PhosphoSite:Q9Z0H4 PaxDb:Q9Z0H4
PRIDE:Q9Z0H4 Ensembl:ENSMUST00000002176 Ensembl:ENSMUST00000100429
Ensembl:ENSMUST00000114924 Ensembl:ENSMUST00000114927
Ensembl:ENSMUST00000114934 GeneID:14007 KEGG:mmu:14007
UCSC:uc008ign.1 UCSC:uc008igo.1 UCSC:uc008igp.1 UCSC:uc008igq.2
UCSC:uc008igs.2 UCSC:uc008igt.2 UCSC:uc008igv.2 InParanoid:Q9Z0H4
OMA:TMRNEEL NextBio:284908 Bgee:Q9Z0H4 CleanEx:MM_CUGBP2
Genevestigator:Q9Z0H4 Uniprot:Q9Z0H4
Length = 508
Score = 361 (132.1 bits), Expect = 6.2e-32, P = 6.2e-32
Identities = 74/190 (38%), Positives = 118/190 (62%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 35 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 88
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 89 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 146
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 147 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 207 VKFADTQKDK 216
>RGD|68347 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006376 "mRNA splice site selection" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360 RGD:68347
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0006376 GeneTree:ENSGT00560000076837 CTD:10659 OMA:TMRNEEL
EMBL:AF090695 EMBL:AJ010351 EMBL:AJ010386 EMBL:BC129096
IPI:IPI00212483 IPI:IPI00781372 IPI:IPI00854036 IPI:IPI00854042
RefSeq:NP_058893.2 UniGene:Rn.162247 ProteinModelPortal:Q792H5
SMR:Q792H5 STRING:Q792H5 PhosphoSite:Q792H5 PRIDE:Q792H5
Ensembl:ENSRNOT00000023436 GeneID:29428 KEGG:rno:29428
InParanoid:Q792H5 NextBio:609142 ArrayExpress:Q792H5
Genevestigator:Q792H5 Uniprot:Q792H5
Length = 508
Score = 361 (132.1 bits), Expect = 6.2e-32, P = 6.2e-32
Identities = 74/190 (38%), Positives = 118/190 (62%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 35 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 88
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 89 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 146
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 147 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 206
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 207 VKFADTQKDK 216
>UNIPROTKB|Q5R995 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
InParanoid:Q5R995 Uniprot:Q5R995
Length = 513
Score = 361 (132.1 bits), Expect = 7.9e-32, P = 7.9e-32
Identities = 75/188 (39%), Positives = 116/188 (61%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKY 100
PD D + K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ +
Sbjct: 35 PDQPDLDAI-KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 93
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEV 159
T + A A ALHN LPG PIQ++ AD E+ AVE KLF+G ++K+ TE ++
Sbjct: 94 YTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN--AVEDRKLFIGMISKKCTENDI 151
Query: 160 EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVR 219
+FS +G++E+ ++ SRGC V ++ R MA AI A++ TM GC P+ V+
Sbjct: 152 RVMFSSFGQIEECRILWGPDGLSRGCALVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 211
Query: 220 FADPKRPR 227
FAD ++ +
Sbjct: 212 FADTQKDK 219
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 333 (122.3 bits), Expect = 8.0e-32, Sum P(2) = 8.0e-32
Identities = 63/175 (36%), Positives = 111/175 (63%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
+FVG +P + EE + +F + GN++++ +IKDK+T +GC FI ++T EEAD A+
Sbjct: 20 VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTT 79
Query: 114 HNQHTLPGGVG-PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
+ T + P+QV+Y+D E E++ E KLF+G L + E ++ +F YG +ED+
Sbjct: 80 NESGTFLENMNKPLQVKYSDNEIEKM---ERKLFIGMLGT-SDEDQIRILFGNYGIIEDL 135
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R++ + +G GF+KYS RD + A+ ++G +T+ G + P+ V+FAD +R +
Sbjct: 136 NIVREKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLPIIVKFADTERQK 190
Score = 122 (48.0 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 24/82 (29%), Positives = 49/82 (59%)
Query: 143 YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAIN 201
+ +FVG + E+ V +IF+ +G + D+ +++D+ S+GC F+ +S ++ A A+N
Sbjct: 18 FTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALN 77
Query: 202 ALNGIYT-MRGCDQPLTVRFAD 222
N T + ++PL V+++D
Sbjct: 78 TTNESGTFLENMNKPLQVKYSD 99
Score = 37 (18.1 bits), Expect = 8.0e-32, Sum P(2) = 8.0e-32
Identities = 12/47 (25%), Positives = 16/47 (34%)
Query: 643 PFSSSYQAPVVRGQHNAQELGYTQLPPVAAGSVNNPTRFQQGLQAAQ 689
PF + + + N GY Q P V G + F Q Q
Sbjct: 230 PFFYGQNSQMSQAMGNNGYRGYQQQPNVNFGMMQGNQAFDYNQQQQQ 276
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 349 (127.9 bits), Expect = 1.0e-31, P = 1.0e-31
Identities = 71/176 (40%), Positives = 108/176 (61%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++P+FE++G + E+ +IKDK TG +GC F+ Y E A +A A
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH G PIQV+ AD E G + KLFVG L KQ ++++V +IF P+G +++
Sbjct: 68 LHYSSGYSGMNRPIQVKPADSEGR--GE-DRKLFVGMLGKQQSDEDVRKIFEPFGGIDEC 124
Query: 173 YLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++R S+ GC FVK+ A +AIN+L+G T+ G L V+FAD ++ R
Sbjct: 125 TVLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHGSRTLPGASSSLVVKFADTEKER 180
>UNIPROTKB|E9PC62 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC026887 KO:K13207
GO:GO:0006376 CTD:10659 EMBL:AL157704 EMBL:AL136320 IPI:IPI00845479
RefSeq:NP_006552.3 UniGene:Hs.309288 GeneID:10659 KEGG:hsa:10659
HGNC:HGNC:2550 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
OMA:TMRNEEL EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:E9PC62
Ensembl:ENST00000450189 Ensembl:ENST00000542579 UCSC:uc001ikl.4
Uniprot:E9PC62
Length = 521
Score = 361 (132.1 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 74/190 (38%), Positives = 118/190 (62%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 42 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 95
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TLPG PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 96 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 153
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSP+G++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 154 DIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIV 213
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 214 VKFADTQKDK 223
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 347 (127.2 bits), Expect = 1.8e-31, P = 1.8e-31
Identities = 70/169 (41%), Positives = 104/169 (61%)
Query: 59 VPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118
+P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A ALH Q T
Sbjct: 15 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 74
Query: 119 LPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE 178
LPG PIQV+ AD E G + KLFVG L KQ T+++V ++F P+G +++ ++R
Sbjct: 75 LPGMNRPIQVKPADSESR--GE-DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP 131
Query: 179 LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 132 DGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 180
Score = 181 (68.8 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 35/85 (41%), Positives = 51/85 (60%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K +ED+R +FE G + E +++ G +GC F+K+ T EA AI
Sbjct: 97 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 155
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH+ TLPG + V++AD E+ER
Sbjct: 156 LHSSRTLPGASSSLVVKFADTEKER 180
Score = 96 (38.9 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 134 ERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSH 192
+++R G +F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + +
Sbjct: 371 QQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDN 430
Query: 193 RDMALAAINALNG 205
A AAI A+NG
Sbjct: 431 PASAQAAIQAMNG 443
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 346 (126.9 bits), Expect = 2.3e-31, P = 2.3e-31
Identities = 70/169 (41%), Positives = 104/169 (61%)
Query: 59 VPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118
+P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A ALH Q T
Sbjct: 16 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 75
Query: 119 LPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE 178
LPG PIQV+ AD E G + KLFVG L KQ T+++V ++F P+G +++ ++R
Sbjct: 76 LPGMNRPIQVKPADSESR--G--DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGP 131
Query: 179 LKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
S+GC FVK+ A AAIN L+ T+ G L V+FAD ++ R
Sbjct: 132 DGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 180
Score = 181 (68.8 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 35/85 (41%), Positives = 51/85 (60%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K +ED+R +FE G + E +++ G +GC F+K+ T EA AI
Sbjct: 97 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 155
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH+ TLPG + V++AD E+ER
Sbjct: 156 LHSSRTLPGASSSLVVKFADTEKER 180
Score = 96 (38.9 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 134 ERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSH 192
+++R G +F+ L ++ T+ E+ ++F P+G V + D QS+ GFV + +
Sbjct: 372 QQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDN 431
Query: 193 RDMALAAINALNG 205
A AAI A+NG
Sbjct: 432 PASAQAAIQAMNG 444
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 358 (131.1 bits), Expect = 8.1e-31, P = 8.1e-31
Identities = 74/190 (38%), Positives = 117/190 (61%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFI 98
P PD + K+FVG +P++ E++++ LFE +G V ++ +++D+ Q +GCCF+
Sbjct: 110 PDPDAI------KMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFV 163
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE-YKLFVGSLNKQATEK 157
+ T + A A ALHN TL G PIQ++ AD E+ AVE KLF+G ++K+ E
Sbjct: 164 TFYTRKAALEAQNALHNIKTLTGMHHPIQMKPADSEKSN--AVEDRKLFIGMVSKKCNEN 221
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLT 217
++ +FSPYG++E+ ++R SRGC FV +S R MA AI A++ TM GC P+
Sbjct: 222 DIRVMFSPYGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPMV 281
Query: 218 VRFADPKRPR 227
V+FAD ++ +
Sbjct: 282 VKFADTQKDK 291
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 357 (130.7 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 71/187 (37%), Positives = 112/187 (59%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PSP D + K+FVG +P+ E D R LFE++G+V +++DK T +GCCF+ +
Sbjct: 45 PSPSEPDTDAI-KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTF 103
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVE 160
++A A ALHN + G P+Q++ AD E E KLF+G L+K+ E+ +
Sbjct: 104 YHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTENRN----ERKLFIGQLSKKHNEENLR 159
Query: 161 EIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
EIF+ +G +ED ++RD+ +SRGC FV +++R A+ A ++ TM GC PL V+F
Sbjct: 160 EIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKF 219
Query: 221 ADPKRPR 227
AD ++ +
Sbjct: 220 ADTQKDK 226
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 360 (131.8 bits), Expect = 1.5e-30, P = 1.5e-30
Identities = 77/192 (40%), Positives = 114/192 (59%)
Query: 37 GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC 96
G P PD + K+FVG VPK+ E +R +FEE+G V + +++DK TG +GCC
Sbjct: 348 GEKEPDPDNI------KMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCC 401
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ + T A +A ALHN TL G PIQ++ AD E E KLFVG LNK+ E
Sbjct: 402 FVTFYTRHAALKAQDALHNVKTLNGMYHPIQMKPADSENRN----ERKLFVGMLNKKLNE 457
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINA-LNGIYTMRGCDQP 215
+V ++F +G +E+ ++RD+ QS+GC FV ++ + A++AI L+ M GC P
Sbjct: 458 NDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSP 517
Query: 216 LTVRFADPKRPR 227
L V+FAD ++ +
Sbjct: 518 LVVKFADTQKEK 529
>UNIPROTKB|E2RGA8 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
Length = 539
Score = 349 (127.9 bits), Expect = 6.6e-30, P = 6.6e-30
Identities = 78/200 (39%), Positives = 120/200 (60%)
Query: 30 GQKRGFSGRGGPSPDL-VDGSSFAKLFVGS-VPKTAREEDIRPLFEEHGNVIEVALIKDK 87
G++ G GRG ++ V+ S+ + G+ +P+ E+D++P+FE+ G + E+ +IKDK
Sbjct: 61 GKEVGV-GRGVWRGEVFVEESAAGEQSSGTQIPRHLEEKDLKPIFEQFGRIFELTVIKDK 119
Query: 88 KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFV 147
TG +GC F+ Y + A +A ALH Q TLPG PIQV+ AD E G + KLFV
Sbjct: 120 YTGLHKGCAFLTYCARDSALKAQSALHEQKTLPGMNRPIQVKPADSESR--GE-DRKLFV 176
Query: 148 GSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIY 207
G L KQ T+++V ++F P+G +++ ++R S+GC FVK+ A AAIN L+
Sbjct: 177 GMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSR 236
Query: 208 TMRGCDQPLTVRFADPKRPR 227
T+ G L V+FAD ++ R
Sbjct: 237 TLPGASSSLVVKFADTEKER 256
>WB|WBGene00006807 [details] [associations]
symbol:unc-75 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0032224 "positive regulation of
synaptic transmission, cholinergic" evidence=IMP] [GO:0032230
"positive regulation of synaptic transmission, GABAergic"
evidence=IMP] [GO:0016071 "mRNA metabolic process" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0007271 "synaptic
transmission, cholinergic" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0016071 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0032230 GO:GO:0007271 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 GO:GO:0032224 EMBL:Z81473
EMBL:AY342388 PIR:T19347 RefSeq:NP_492958.3 UniGene:Cel.20354
ProteinModelPortal:G5EE68 SMR:G5EE68 IntAct:G5EE68
EnsemblMetazoa:C17D12.2 GeneID:182722 KEGG:cel:CELE_C17D12.2
CTD:182722 WormBase:C17D12.2 OMA:SHAQTEN NextBio:918598
Uniprot:G5EE68
Length = 514
Score = 346 (126.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 72/179 (40%), Positives = 106/179 (59%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D+R LFE+ G + E ++KDK TG +GC F+ Y + A R
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQAT 89
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEY----KLFVGSLNKQATEKEVEEIFSPYGR 168
LH+Q TLPG +QV+ AD + + KLF+G L+KQ +E EV +F+ +G
Sbjct: 90 LHDQKTLPGMNRAMQVKPADTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGE 149
Query: 169 VEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+++V ++R S+GC FVKY H A AI+AL+G TM G L V++AD ++ R
Sbjct: 150 LDEVTVLRGADGASKGCAFVKYKHGLDAHMAISALHGSQTMPGASSSLVVKYADTEKER 208
>UNIPROTKB|H9L0T2 [details] [associations]
symbol:H9L0T2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02043362 EMBL:AADN02043363
Ensembl:ENSGALT00000028399 Uniprot:H9L0T2
Length = 225
Score = 317 (116.6 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 72/191 (37%), Positives = 104/191 (54%)
Query: 38 RGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHG-NVIEVALIKDKKTGQQQGCC 96
RG P + + L G +P+ E+ + + E+ ++KD+ TG +GC
Sbjct: 4 RGSPD-SMKTWDAIKALSWGQIPRNLEEKGPQAANKNSSARSNELTVLKDRYTGMHKGCA 62
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ Y + A +A ALH Q TLPG PIQV+ AD E G + KLFVG LNKQ +E
Sbjct: 63 FLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR--GGRDRKLFVGMLNKQQSE 120
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216
+V +F P+G +++ ++R S+GC FVK+S A AAI+AL+G TM G L
Sbjct: 121 DDVLRLFEPFGVIDECTVLRGPDGNSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 180
Query: 217 TVRFADPKRPR 227
V+FAD + R
Sbjct: 181 VVKFADTDKER 191
>UNIPROTKB|A1L544 [details] [associations]
symbol:TNRC4 "Trinucleotide repeat containing 4"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 UniGene:Bt.18201 HOVERGEN:HBG002295
EMBL:DAAA02007247 EMBL:BT029831 IPI:IPI00906974 SMR:A1L544
Ensembl:ENSBTAT00000056432 HOGENOM:HOG000220928 Uniprot:A1L544
Length = 139
Score = 297 (109.6 bits), Expect = 8.6e-26, P = 8.6e-26
Identities = 58/133 (43%), Positives = 86/133 (64%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG +P+ E+D++P+FE+ G + E+ +IKDK TG +GC F+ Y + A +A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
LH Q TLPG PIQV+ AD E G + KLFVG L KQ T+++V ++F P+G +++
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSESR--GE-DRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124
Query: 173 YLMRDELKQSRGC 185
++R S+GC
Sbjct: 125 TVLRGPDGTSKGC 137
Score = 139 (54.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINA 202
KLFVG + + EK+++ IF +GR+ ++ +++D+ +GC F+ Y RD AL A +A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 203 LNGIYTMRGCDQPLTVRFAD 222
L+ T+ G ++P+ V+ AD
Sbjct: 68 LHEQKTLPGMNRPIQVKPAD 87
>UNIPROTKB|F1MD42 [details] [associations]
symbol:F1MD42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:DAAA02019657 EMBL:DAAA02019658
EMBL:DAAA02019659 EMBL:DAAA02019660 EMBL:DAAA02019661
IPI:IPI00713955 ProteinModelPortal:F1MD42
Ensembl:ENSBTAT00000029023 OMA:PAQSPTM Uniprot:F1MD42
Length = 489
Score = 294 (108.6 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 71/193 (36%), Positives = 104/193 (53%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
G PD KLFVG +P+ E+D++PLFE+ G + E+ ++KD TG +G +
Sbjct: 37 GGQPDGTKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGLRWWT 96
Query: 100 YATSEEADRAIRALHNQHTL----PGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQAT 155
+ + + A A Q L PGGV + GE +R KLFVG LNKQ +
Sbjct: 97 HIRRDNPEEAPAAAGGQRELGLQRPGGV-KLPPSSPSGEGDR------KLFVGMLNKQQS 149
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
E++V +F P+G +++ ++R S+ GC FVK+S A AAI+AL+G TM G
Sbjct: 150 EEDVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 209
Query: 215 PLTVRFADPKRPR 227
L V+FAD + R
Sbjct: 210 SLVVKFADTDKER 222
Score = 181 (68.8 bits), Expect = 9.7e-11, P = 9.7e-11
Identities = 46/140 (32%), Positives = 67/140 (47%)
Query: 30 GQKR-GFSGRGGPS--PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKD 86
GQ+ G GG P G KLFVG + K EED+ LF+ G + E +++
Sbjct: 112 GQRELGLQRPGGVKLPPSSPSGEGDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG 171
Query: 87 KKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLF 146
+ GC F+K+++ EA AI ALH T+PG + V++AD ++ER +
Sbjct: 172 PDGSSKAGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERT-LRRMQQM 230
Query: 147 VGSLNKQATEKEVEEIFSPY 166
VG L + FSPY
Sbjct: 231 VGQLGILTPSLTLP--FSPY 248
>UNIPROTKB|Q0V9L3 [details] [associations]
symbol:celf4 "CUGBP Elav-like family member 4" species:8364
"Xenopus (Silurana) tropicalis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 CTD:56853 EMBL:BC121490 RefSeq:NP_001072378.1
UniGene:Str.35078 ProteinModelPortal:Q0V9L3 SMR:Q0V9L3
GeneID:779831 KEGG:xtr:779831 Xenbase:XB-GENE-5873699
Uniprot:Q0V9L3
Length = 424
Score = 218 (81.8 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 47/116 (40%), Positives = 66/116 (56%)
Query: 30 GQKRGFS-GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKK 88
G G + GG + + KLF+G +P+ E+D++PLFEE G + E+ ++KD+
Sbjct: 24 GHMNGLTHSPGGAATIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF 83
Query: 89 TGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGE-RERLGAVEY 143
TG +GC F+ Y E A +A ALH Q TLPG PIQV+ AD E R V+Y
Sbjct: 84 TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGCAFVKY 139
Score = 135 (52.6 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 25/80 (31%), Positives = 50/80 (62%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINA 202
KLF+G + + EK+++ +F +G++ ++ +++D +GC F+ Y R+ AL A +A
Sbjct: 48 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 107
Query: 203 LNGIYTMRGCDQPLTVRFAD 222
L+ T+ G ++P+ V+ AD
Sbjct: 108 LHEQKTLPGMNRPIQVKPAD 127
Score = 119 (46.9 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 84 IKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERER 137
+K + + GC F+KY++ EA AI ALH T+PG + V++AD ++ER
Sbjct: 123 VKPADSESRGGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKER 176
Score = 113 (44.8 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 26/48 (54%), Positives = 30/48 (62%)
Query: 181 QSRG-CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+SRG C FVKYS A AAINAL+G TM G L V+FAD + R
Sbjct: 129 ESRGGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKER 176
Score = 47 (21.6 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 186 GFVKYSHRDMALAAINALNG 205
GFV + + A AAI A+NG
Sbjct: 383 GFVSFDNPASAQAAIQAMNG 402
Score = 45 (20.9 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 134 ERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV 169
+++R G LF+ L ++ + E+ ++F P+G V
Sbjct: 350 QQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGFV 385
>UNIPROTKB|F1S8E8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:DGMKDLD EMBL:FP016150
EMBL:FP565386 Ensembl:ENSSSCT00000014721 Uniprot:F1S8E8
Length = 420
Score = 272 (100.8 bits), Expect = 2.5e-21, P = 2.5e-21
Identities = 62/140 (44%), Positives = 84/140 (60%)
Query: 89 TGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVG 148
T +GC F+ Y + A +A ALH Q TLPG PIQV+ AD E R G + KLFVG
Sbjct: 17 THTHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSE-SRGG--DRKLFVG 73
Query: 149 SLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSR-GCGFVKYSHRDMALAAINALNGIY 207
LNKQ +E++V +F P+G +++ ++R S+ GC FVK+S A AAI+AL+G
Sbjct: 74 MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHALHGSQ 133
Query: 208 TMRGCDQPLTVRFADPKRPR 227
TM G L V+FAD + R
Sbjct: 134 TMPGASSSLVVKFADTDKER 153
Score = 171 (65.3 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 39/114 (34%), Positives = 59/114 (51%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K EED+ LF+ G + E +++ + GC F+K+++ EA AI A
Sbjct: 69 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHA 128
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
LH T+PG + V++AD ++ER + VG L + FSPY
Sbjct: 129 LHGSQTMPGASSSLVVKFADTDKERT-LRRMQQMVGQLGILTPSLTLP--FSPY 179
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 237 (88.5 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 59/179 (32%), Positives = 95/179 (53%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D D L V +P+ +E++R LF G + LI+DK G G F+ Y T+
Sbjct: 12 DCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTA 71
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
++A+RAI L N L I+V YA E + + L++ L + T+K+VE++F
Sbjct: 72 KDAERAINTL-NGLRLQSKT--IKVSYARPSSEVIK--DANLYISGLPRTMTQKDVEDMF 126
Query: 164 SPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
SP+GR+ + ++ D+ SRG F+++ R A AI + NG + G +P+TV+FA
Sbjct: 127 SPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 242 (90.2 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 66/192 (34%), Positives = 101/192 (52%)
Query: 36 SGRGGPSPDLVDGS---SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+ R PSP GS S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 69 NSRSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 128
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLN 151
G F+ Y ++A++AI L+ L I+V YA R ++ + L+V L
Sbjct: 129 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLP 182
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMR 210
K T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 183 KTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG-QKPS 241
Query: 211 GCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 242 GAAEPITVKFAN 253
Score = 136 (52.9 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 174 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIK 233
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q G PI V++A+ ++
Sbjct: 234 GLNGQKP-SGAAEPITVKFANNPSQK 258
Score = 104 (41.7 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 387 NG-YRL-G-DRVLQVSFKTNK 404
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 223 (83.6 bits), Expect = 8.4e-18, Sum P(2) = 8.4e-18
Identities = 61/183 (33%), Positives = 101/183 (55%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 AAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV-E 170
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G + +
Sbjct: 73 IM-NMIKLYGK--PIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPG 229
R G
Sbjct: 186 RHG 188
Score = 106 (42.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVA-LIKDKKTGQQQGCCFIKYATSEEADRAI 110
A +F+G++ E+ + F G +++ +++D TG +G FI +A+ + +D AI
Sbjct: 100 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159
Query: 111 RALHNQHTLPGGVGPIQVRYA---DGERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164
A++ Q+ PI V YA D + ER G+ +L N + ++F+
Sbjct: 160 EAMNGQYLCNR---PITVSYAFKKDSKGERHGSAAERLLAAQ-NPLSQADRPHQLFA 212
Score = 60 (26.2 bits), Expect = 8.4e-18, Sum P(2) = 8.4e-18
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 272 PMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNP--GGPADVPLP 315
P P MGP +PG+RG +PP G P P G P+P
Sbjct: 340 PFGPP-MGPPMHPGMRGPPPPMPPPGYGAGPPRPPPFGFQRGPPMP 384
Score = 50 (22.7 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 17/43 (39%), Positives = 19/43 (44%)
Query: 272 PMSPRNMGP---LSNPGIRGFGNQLPPRSG-DLGMPLNPGGPA 310
PM P GP + PG G G PP G G P+ P PA
Sbjct: 348 PMHPGMRGPPPPMPPPGY-GAGPPRPPPFGFQRGPPMPPRPPA 389
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 235 (87.8 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 64/192 (33%), Positives = 99/192 (51%)
Query: 36 SGRGGPSP---DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+ R PSP S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 25 NNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 84
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLN 151
G F+ Y ++A++AI L+ L I+V YA R ++ + L+V L
Sbjct: 85 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLP 138
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMR 210
K T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 139 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPS 197
Query: 211 GCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 198 GATEPITVKFAN 209
Score = 136 (52.9 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 130 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 189
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q G PI V++A+ ++
Sbjct: 190 GLNGQKP-SGATEPITVKFANNPSQK 214
Score = 104 (41.7 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 330 NG-YRL-G-DRVLQVSFKTNK 347
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 235 (87.8 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 64/192 (33%), Positives = 99/192 (51%)
Query: 36 SGRGGPSP---DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+ R PSP S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 27 NNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 86
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLN 151
G F+ Y ++A++AI L+ L I+V YA R ++ + L+V L
Sbjct: 87 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLP 140
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMR 210
K T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 141 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPS 199
Query: 211 GCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 200 GATEPITVKFAN 211
Score = 136 (52.9 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q G PI V++A+ ++
Sbjct: 192 GLNGQKP-SGATEPITVKFANNPSQK 216
Score = 104 (41.7 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 345 NG-YRL-G-DRVLQVSFKTNK 362
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 235 (87.8 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 64/192 (33%), Positives = 99/192 (51%)
Query: 36 SGRGGPSP---DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+ R PSP S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 27 NNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 86
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLN 151
G F+ Y ++A++AI L+ L I+V YA R ++ + L+V L
Sbjct: 87 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLP 140
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMR 210
K T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 141 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPS 199
Query: 211 GCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 200 GATEPITVKFAN 211
Score = 136 (52.9 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q G PI V++A+ ++
Sbjct: 192 GLNGQKP-SGATEPITVKFANNPSQK 216
Score = 104 (41.7 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 345 NG-YRL-G-DRVLQVSFKTNK 362
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 235 (87.8 bits), Expect = 2.9e-17, P = 2.9e-17
Identities = 64/192 (33%), Positives = 99/192 (51%)
Query: 36 SGRGGPSP---DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+ R PSP S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 32 NSRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 91
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLN 151
G F+ Y ++A++AI L+ L I+V YA R ++ + L+V L
Sbjct: 92 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLP 145
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMR 210
K T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 146 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPS 204
Query: 211 GCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 205 GATEPITVKFAN 216
Score = 136 (52.9 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q G PI V++A+ ++
Sbjct: 197 GLNGQKP-SGATEPITVKFANNPSQK 221
Score = 104 (41.7 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 350 NG-YRL-G-DRVLQVSFKTNK 367
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 235 (87.8 bits), Expect = 2.9e-17, P = 2.9e-17
Identities = 64/192 (33%), Positives = 99/192 (51%)
Query: 36 SGRGGPSP---DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+ R PSP S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 32 NNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 91
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLN 151
G F+ Y ++A++AI L+ L I+V YA R ++ + L+V L
Sbjct: 92 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLP 145
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMR 210
K T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 146 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPS 204
Query: 211 GCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 205 GATEPITVKFAN 216
Score = 136 (52.9 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q G PI V++A+ ++
Sbjct: 197 GLNGQKP-SGATEPITVKFANNPSQK 221
Score = 104 (41.7 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 350 NG-YRL-G-DRVLQVSFKTNK 367
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 235 (87.8 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 64/192 (33%), Positives = 99/192 (51%)
Query: 36 SGRGGPSP---DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+ R PSP S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 20 NNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 79
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLN 151
G F+ Y ++A++AI L+ L I+V YA R ++ + L+V L
Sbjct: 80 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLP 133
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMR 210
K T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 134 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPS 192
Query: 211 GCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 193 GATEPITVKFAN 204
Score = 136 (52.9 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q G PI V++A+ ++
Sbjct: 185 GLNGQKP-SGATEPITVKFANNPSQK 209
Score = 104 (41.7 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 352 NG-YRL-G-DRVLQVSFKTNK 369
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 235 (87.8 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 64/192 (33%), Positives = 99/192 (51%)
Query: 36 SGRGGPSP---DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+ R PSP S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 20 NNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 79
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLN 151
G F+ Y ++A++AI L+ L I+V YA R ++ + L+V L
Sbjct: 80 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLP 133
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMR 210
K T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 134 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPS 192
Query: 211 GCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 193 GATEPITVKFAN 204
Score = 136 (52.9 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q G PI V++A+ ++
Sbjct: 185 GLNGQKP-SGATEPITVKFANNPSQK 209
Score = 104 (41.7 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 352 NG-YRL-G-DRVLQVSFKTNK 369
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 235 (87.8 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 64/192 (33%), Positives = 99/192 (51%)
Query: 36 SGRGGPSP---DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+ R PSP S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 27 NNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 86
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLN 151
G F+ Y ++A++AI L+ L I+V YA R ++ + L+V L
Sbjct: 87 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLP 140
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMR 210
K T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 141 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPS 199
Query: 211 GCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 200 GATEPITVKFAN 211
Score = 136 (52.9 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q G PI V++A+ ++
Sbjct: 192 GLNGQKP-SGATEPITVKFANNPSQK 216
Score = 104 (41.7 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 359 NG-YRL-G-DRVLQVSFKTNK 376
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 235 (87.8 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 64/192 (33%), Positives = 99/192 (51%)
Query: 36 SGRGGPSP---DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+ R PSP S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 27 NNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 86
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLN 151
G F+ Y ++A++AI L+ L I+V YA R ++ + L+V L
Sbjct: 87 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLP 140
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMR 210
K T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 141 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPS 199
Query: 211 GCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 200 GATEPITVKFAN 211
Score = 136 (52.9 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q G PI V++A+ ++
Sbjct: 192 GLNGQKP-SGATEPITVKFANNPSQK 216
Score = 104 (41.7 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 359 NG-YRL-G-DRVLQVSFKTNK 376
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 235 (87.8 bits), Expect = 3.5e-17, P = 3.5e-17
Identities = 64/192 (33%), Positives = 99/192 (51%)
Query: 36 SGRGGPSP---DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+ R PSP S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 43 NNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 102
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLN 151
G F+ Y ++A++AI L+ L I+V YA R ++ + L+V L
Sbjct: 103 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLP 156
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMR 210
K T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 157 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPS 215
Query: 211 GCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 216 GATEPITVKFAN 227
Score = 136 (52.9 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 148 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 207
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q G PI V++A+ ++
Sbjct: 208 GLNGQKP-SGATEPITVKFANNPSQK 232
Score = 104 (41.7 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 361 NG-YRL-G-DRVLQVSFKTNK 378
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 235 (87.8 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 64/192 (33%), Positives = 99/192 (51%)
Query: 36 SGRGGPSP---DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+ R PSP S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 31 NNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 90
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLN 151
G F+ Y ++A++AI L+ L I+V YA R ++ + L+V L
Sbjct: 91 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLP 144
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMR 210
K T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 145 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPS 203
Query: 211 GCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 204 GATEPITVKFAN 215
Score = 136 (52.9 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 136 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 195
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q G PI V++A+ ++
Sbjct: 196 GLNGQKP-SGATEPITVKFANNPSQK 220
Score = 104 (41.7 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 363 NG-YRL-G-DRVLQVSFKTNK 380
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 235 (87.8 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 64/192 (33%), Positives = 99/192 (51%)
Query: 36 SGRGGPSP---DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+ R PSP S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 32 NNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 91
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLN 151
G F+ Y ++A++AI L+ L I+V YA R ++ + L+V L
Sbjct: 92 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLP 145
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMR 210
K T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 146 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPS 204
Query: 211 GCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 205 GATEPITVKFAN 216
Score = 136 (52.9 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q G PI V++A+ ++
Sbjct: 197 GLNGQKP-SGATEPITVKFANNPSQK 221
Score = 104 (41.7 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 364 NG-YRL-G-DRVLQVSFKTNK 381
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 235 (87.8 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 64/192 (33%), Positives = 99/192 (51%)
Query: 36 SGRGGPSP---DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ 92
+ R PSP S L V +P+ +E+ R LF G + L++DK TGQ
Sbjct: 32 NNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 91
Query: 93 QGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLN 151
G F+ Y ++A++AI L+ L I+V YA R ++ + L+V L
Sbjct: 92 LGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLP 145
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMR 210
K T+KE+E++FS YGR+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 146 KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPS 204
Query: 211 GCDQPLTVRFAD 222
G +P+TV+FA+
Sbjct: 205 GATEPITVKFAN 216
Score = 136 (52.9 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q G PI V++A+ ++
Sbjct: 197 GLNGQKP-SGATEPITVKFANNPSQK 221
Score = 104 (41.7 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ + E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 364 NG-YRL-G-DRVLQVSFKTNK 381
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 233 (87.1 bits), Expect = 3.9e-17, P = 3.9e-17
Identities = 64/201 (31%), Positives = 103/201 (51%)
Query: 34 GFSGRGGP--SPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQ 91
G S GP S + S L V +P+ +E+ + LF G + L++DK TGQ
Sbjct: 18 GTSLPNGPVISTNGATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQ 77
Query: 92 QQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSL 150
G F+ Y +AD+AI L+ L I+V YA R ++ + L+V L
Sbjct: 78 SLGYGFVNYVDPNDADKAINTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGL 131
Query: 151 NKQATEKEVEEIFSPYGRVEDVYLMRDELKQ--SRGCGFVKYSHRDMALAAINALNGIYT 208
K ++K++E++FS YGR+ ++ D++ SRG GF+++ R+ A AI LNG
Sbjct: 132 PKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKP 191
Query: 209 MRGCDQPLTVRFADPKRPRPG 229
+ G +P+TV+FA+ + G
Sbjct: 192 L-GAAEPITVKFANNPSQKTG 211
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 223 (83.6 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 61/183 (33%), Positives = 101/183 (55%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV-E 170
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G + +
Sbjct: 73 IM-NMIKLYGK--PIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPG 229
R G
Sbjct: 186 RHG 188
Score = 106 (42.4 bits), Expect = 0.00076, Sum P(2) = 0.00075
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVA-LIKDKKTGQQQGCCFIKYATSEEADRAI 110
A +F+G++ E+ + F G +++ +++D TG +G FI +A+ + +D AI
Sbjct: 100 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159
Query: 111 RALHNQHTLPGGVGPIQVRYA---DGERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164
A++ Q+ PI V YA D + ER G+ +L N + ++F+
Sbjct: 160 EAMNGQYLCNR---PITVSYAFKKDSKGERHGSAAERLLAAQ-NPLSQADRPHQLFA 212
Score = 55 (24.4 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGG-PADVPLPG 316
NP + G+ LPP GMP PG P VP PG
Sbjct: 222 NPVVSSLGSGLPPP----GMP-PPGSFPPPVPPPG 251
Score = 52 (23.4 bits), Expect = 8.8e-17, Sum P(2) = 8.8e-17
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 266 PQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGL 317
P + P PR + +PG G LPPR G P+ G P +P G+
Sbjct: 327 PGSGGQP-PPRPPPGMPHPGPPPMG--LPPRGPPFGSPM--GHPGPMPPHGM 373
Score = 50 (22.7 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 24/89 (26%), Positives = 32/89 (35%)
Query: 266 PQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGD--LGMP------LNPGGPADVPLPGL 317
P A P P M P P G G PP +G G P +P P+ +P PG+
Sbjct: 249 PPGALPPGIPPAMPPPPMPP--GAGGHGPPSAGTPGAGHPGHGHSHPHPFPPSGMPHPGM 306
Query: 318 AVSSTSSALQQNFCQPESQAPSLGQQISP 346
+ + P + P G Q P
Sbjct: 307 SQMQLAHHGPHGLGHPHAGPPGSGGQPPP 335
Score = 46 (21.3 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 22/57 (38%), Positives = 24/57 (42%)
Query: 272 PMSPRNM-GP--LSNP-GIRG------FGNQ---LPPRSGDLGMPLNPGGPADVPLP 315
PM P M GP L P G G +G Q LPP P+ P GP PLP
Sbjct: 367 PMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLP 423
Score = 45 (20.9 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 279 GPLSNPGIRGFGNQLPPRSGDLGMPLNPG-GPADVPLP 315
GP+ G+RG +PP G G P P G PLP
Sbjct: 366 GPMPPHGMRGPPPLMPPH-GYTGPPRPPPYGYQRGPLP 402
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 223 (83.6 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 61/183 (33%), Positives = 101/183 (55%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV-E 170
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G + +
Sbjct: 73 IM-NMIKLYGK--PIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPG 229
R G
Sbjct: 186 RHG 188
Score = 106 (42.4 bits), Expect = 0.00076, Sum P(2) = 0.00075
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVA-LIKDKKTGQQQGCCFIKYATSEEADRAI 110
A +F+G++ E+ + F G +++ +++D TG +G FI +A+ + +D AI
Sbjct: 100 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159
Query: 111 RALHNQHTLPGGVGPIQVRYA---DGERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164
A++ Q+ PI V YA D + ER G+ +L N + ++F+
Sbjct: 160 EAMNGQYLCNR---PITVSYAFKKDSKGERHGSAAERLLAAQ-NPLSQADRPHQLFA 212
Score = 55 (24.4 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGG-PADVPLPG 316
NP + G+ LPP GMP PG P VP PG
Sbjct: 222 NPVVSSLGSGLPPP----GMP-PPGSFPPPVPPPG 251
Score = 51 (23.0 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 24/89 (26%), Positives = 31/89 (34%)
Query: 266 PQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGD--LGMPLN------PGGPADVPLPGL 317
P A P P M P P G G PP +G G P + P P +P PG+
Sbjct: 249 PPGALPPGIPPAMPPPPMPP--GAGGHGPPSAGTPGAGHPAHGHSHPHPFPPGGMPHPGM 306
Query: 318 AVSSTSSALQQNFCQPESQAPSLGQQISP 346
+ + P + P G Q P
Sbjct: 307 SQMQLAHHGPHGLGHPHAGPPGSGGQPPP 335
Score = 50 (22.7 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 266 PQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGL 317
P + P PR + +PG G +PPR G P+ G P +P G+
Sbjct: 327 PGSGGQP-PPRPPPGMPHPGPPPMG--MPPRGPPFGSPM--GHPGPMPPHGM 373
Score = 46 (21.3 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 22/57 (38%), Positives = 24/57 (42%)
Query: 272 PMSPRNM-GP--LSNP-GIRG------FGNQ---LPPRSGDLGMPLNPGGPADVPLP 315
PM P M GP L P G G +G Q LPP P+ P GP PLP
Sbjct: 367 PMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLP 423
Score = 45 (20.9 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 279 GPLSNPGIRGFGNQLPPRSGDLGMPLNPG-GPADVPLP 315
GP+ G+RG +PP G G P P G PLP
Sbjct: 366 GPMPPHGMRGPPPLMPPH-GYTGPPRPPPYGYQRGPLP 402
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 223 (83.6 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 61/183 (33%), Positives = 101/183 (55%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV-E 170
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G + +
Sbjct: 73 IM-NMIKLYGK--PIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPG 229
R G
Sbjct: 186 RHG 188
Score = 106 (42.4 bits), Expect = 0.00076, Sum P(2) = 0.00075
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVA-LIKDKKTGQQQGCCFIKYATSEEADRAI 110
A +F+G++ E+ + F G +++ +++D TG +G FI +A+ + +D AI
Sbjct: 100 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159
Query: 111 RALHNQHTLPGGVGPIQVRYA---DGERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164
A++ Q+ PI V YA D + ER G+ +L N + ++F+
Sbjct: 160 EAMNGQYLCNR---PITVSYAFKKDSKGERHGSAAERLLAAQ-NPLSQADRPHQLFA 212
Score = 55 (24.4 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGG-PADVPLPG 316
NP + G+ LPP GMP PG P VP PG
Sbjct: 222 NPVVSSLGSGLPPP----GMP-PPGSFPPPVPPPG 251
Score = 50 (22.7 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 266 PQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGL 317
P + P PR + +PG G +PPR G P+ G P +P G+
Sbjct: 327 PGSGGQP-PPRPPPGMPHPGPPPMG--MPPRGPPFGSPM--GHPGPMPPHGM 373
Score = 49 (22.3 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 24/89 (26%), Positives = 31/89 (34%)
Query: 266 PQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGD--LGMP------LNPGGPADVPLPGL 317
P A P P M P P G G PP +G G P +P P +P PG+
Sbjct: 249 PPGALPPGIPPAMPPPPMPP--GAGGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGM 306
Query: 318 AVSSTSSALQQNFCQPESQAPSLGQQISP 346
+ + P + P G Q P
Sbjct: 307 SQMQLAHHGPHGLGHPHAGPPGSGGQPPP 335
Score = 46 (21.3 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 22/57 (38%), Positives = 24/57 (42%)
Query: 272 PMSPRNM-GP--LSNP-GIRG------FGNQ---LPPRSGDLGMPLNPGGPADVPLP 315
PM P M GP L P G G +G Q LPP P+ P GP PLP
Sbjct: 367 PMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLP 423
Score = 45 (20.9 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 279 GPLSNPGIRGFGNQLPPRSGDLGMPLNPG-GPADVPLP 315
GP+ G+RG +PP G G P P G PLP
Sbjct: 366 GPMPPHGMRGPPPLMPPH-GYTGPPRPPPYGYQRGPLP 402
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 223 (83.6 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 61/183 (33%), Positives = 101/183 (55%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV-E 170
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G + +
Sbjct: 73 IM-NMIKLYGK--PIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPG 229
R G
Sbjct: 186 RHG 188
Score = 106 (42.4 bits), Expect = 0.00076, Sum P(2) = 0.00075
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVA-LIKDKKTGQQQGCCFIKYATSEEADRAI 110
A +F+G++ E+ + F G +++ +++D TG +G FI +A+ + +D AI
Sbjct: 100 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159
Query: 111 RALHNQHTLPGGVGPIQVRYA---DGERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164
A++ Q+ PI V YA D + ER G+ +L N + ++F+
Sbjct: 160 EAMNGQYLCNR---PITVSYAFKKDSKGERHGSAAERLLAAQ-NPLSQADRPHQLFA 212
Score = 55 (24.4 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGG-PADVPLPG 316
NP + G+ LPP GMP PG P VP PG
Sbjct: 222 NPVVSSLGSGLPPP----GMP-PPGSFPPPVPPPG 251
Score = 50 (22.7 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 266 PQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGL 317
P + P PR + +PG G +PPR G P+ G P +P G+
Sbjct: 327 PGSGGQP-PPRPPPGMPHPGPPPMG--MPPRGPPFGSPM--GHPGPMPPHGM 373
Score = 49 (22.3 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 25/90 (27%), Positives = 32/90 (35%)
Query: 266 PQNAWHPMSPRNMGPLSNP-GIRGFGNQLPPRSGD--LGMP------LNPGGPADVPLPG 316
P A P P M P P G G G PP +G G P +P P +P PG
Sbjct: 249 PPGALPPGIPPAMPPPPMPPGAAGHG---PPSAGTPGAGHPGHGHSHPHPFPPGGMPHPG 305
Query: 317 LAVSSTSSALQQNFCQPESQAPSLGQQISP 346
++ + P + P G Q P
Sbjct: 306 MSQMQLAHHGPHGLGHPHAGPPGSGGQPPP 335
Score = 46 (21.3 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 22/57 (38%), Positives = 24/57 (42%)
Query: 272 PMSPRNM-GP--LSNP-GIRG------FGNQ---LPPRSGDLGMPLNPGGPADVPLP 315
PM P M GP L P G G +G Q LPP P+ P GP PLP
Sbjct: 367 PMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLP 423
Score = 45 (20.9 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 279 GPLSNPGIRGFGNQLPPRSGDLGMPLNPG-GPADVPLP 315
GP+ G+RG +PP G G P P G PLP
Sbjct: 366 GPMPPHGMRGPPPLMPPH-GYTGPPRPPPYGYQRGPLP 402
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 223 (83.6 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 61/183 (33%), Positives = 101/183 (55%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV-E 170
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G + +
Sbjct: 73 IM-NMIKLYGK--PIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPG 229
R G
Sbjct: 186 RHG 188
Score = 106 (42.4 bits), Expect = 0.00076, Sum P(2) = 0.00075
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVA-LIKDKKTGQQQGCCFIKYATSEEADRAI 110
A +F+G++ E+ + F G +++ +++D TG +G FI +A+ + +D AI
Sbjct: 100 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159
Query: 111 RALHNQHTLPGGVGPIQVRYA---DGERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164
A++ Q+ PI V YA D + ER G+ +L N + ++F+
Sbjct: 160 EAMNGQYLCNR---PITVSYAFKKDSKGERHGSAAERLLAAQ-NPLSQADRPHQLFA 212
Score = 55 (24.4 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGG-PADVPLPG 316
NP + G+ LPP GMP PG P VP PG
Sbjct: 222 NPVVSSLGSGLPPP----GMP-PPGSFPPPVPPPG 251
Score = 50 (22.7 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 266 PQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGL 317
P + P PR + +PG G +PPR G P+ G P +P G+
Sbjct: 327 PGSGGQP-PPRPPPGMPHPGPPPMG--MPPRGPPFGSPM--GHPGPMPPHGM 373
Score = 49 (22.3 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 24/89 (26%), Positives = 31/89 (34%)
Query: 266 PQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGD--LGMP------LNPGGPADVPLPGL 317
P A P P M P P G G PP +G G P +P P +P PG+
Sbjct: 249 PPGALPPGIPPAMPPPPMPP--GAGGHGPPAAGTPGAGHPGHGHSHPHPFPPGGMPHPGM 306
Query: 318 AVSSTSSALQQNFCQPESQAPSLGQQISP 346
+ + P + P G Q P
Sbjct: 307 SQMQLAHHGPHGLGHPHAGPPGSGGQPPP 335
Score = 46 (21.3 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 22/57 (38%), Positives = 24/57 (42%)
Query: 272 PMSPRNM-GP--LSNP-GIRG------FGNQ---LPPRSGDLGMPLNPGGPADVPLP 315
PM P M GP L P G G +G Q LPP P+ P GP PLP
Sbjct: 367 PMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLP 423
Score = 45 (20.9 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 279 GPLSNPGIRGFGNQLPPRSGDLGMPLNPG-GPADVPLP 315
GP+ G+RG +PP G G P P G PLP
Sbjct: 366 GPMPPHGMRGPPPLMPPH-GYTGPPRPPPYGYQRGPLP 402
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 223 (83.6 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 61/183 (33%), Positives = 101/183 (55%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV-E 170
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G + +
Sbjct: 73 IM-NMIKLYGK--PIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A D K
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGE 185
Query: 227 RPG 229
R G
Sbjct: 186 RHG 188
Score = 106 (42.4 bits), Expect = 0.00076, Sum P(2) = 0.00075
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVA-LIKDKKTGQQQGCCFIKYATSEEADRAI 110
A +F+G++ E+ + F G +++ +++D TG +G FI +A+ + +D AI
Sbjct: 100 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159
Query: 111 RALHNQHTLPGGVGPIQVRYA---DGERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164
A++ Q+ PI V YA D + ER G+ +L N + ++F+
Sbjct: 160 EAMNGQYLCNR---PITVSYAFKKDSKGERHGSAAERLLAAQ-NPLSQADRPHQLFA 212
Score = 55 (24.4 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGG-PADVPLPG 316
NP + G+ LPP GMP PG P VP PG
Sbjct: 222 NPVVSSLGSGLPPP----GMP-PPGSFPPPVPPPG 251
Score = 50 (22.7 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 266 PQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGL 317
P + P PR + +PG G +PPR G P+ G P +P G+
Sbjct: 327 PGSGGQP-PPRPPPGMPHPGPPPMG--MPPRGPPFGSPM--GHPGPMPPHGM 373
Score = 49 (22.3 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 24/89 (26%), Positives = 31/89 (34%)
Query: 266 PQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGD--LGMP------LNPGGPADVPLPGL 317
P A P P M P P G G PP +G G P +P P +P PG+
Sbjct: 249 PPGALPPGIPPAMPPPPMPP--GAGGHGPPAAGTPGAGHPGHGHSHPHPFPPGGMPHPGM 306
Query: 318 AVSSTSSALQQNFCQPESQAPSLGQQISP 346
+ + P + P G Q P
Sbjct: 307 SQMQLAHHGPHGLGHPHAGPPGSGGQPPP 335
Score = 46 (21.3 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 22/57 (38%), Positives = 24/57 (42%)
Query: 272 PMSPRNM-GP--LSNP-GIRG------FGNQ---LPPRSGDLGMPLNPGGPADVPLP 315
PM P M GP L P G G +G Q LPP P+ P GP PLP
Sbjct: 367 PMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLP 423
Score = 45 (20.9 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 279 GPLSNPGIRGFGNQLPPRSGDLGMPLNPG-GPADVPLP 315
GP+ G+RG +PP G G P P G PLP
Sbjct: 366 GPMPPHGMRGPPPLMPPH-GYTGPPRPPPYGYQRGPLP 402
>UNIPROTKB|F1NYP4 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:EDSEKNG EMBL:AADN02067588
EMBL:AADN02067589 EMBL:AADN02067590 EMBL:AADN02067591
EMBL:AADN02067592 EMBL:AADN02067593 EMBL:AADN02067594
EMBL:AADN02067595 EMBL:AADN02067596 IPI:IPI00590965
Ensembl:ENSGALT00000003800 Uniprot:F1NYP4
Length = 361
Score = 195 (73.7 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 40/84 (47%), Positives = 52/84 (61%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203
KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL
Sbjct: 10 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 69
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
+G TM G L V+FAD + R
Sbjct: 70 HGSQTMPGASSSLVVKFADTDKER 93
Score = 190 (71.9 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R LFE GN+ E +++ G +GC F+KY++ EA AI A
Sbjct: 10 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINA 68
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 69 LHGSQTMPGASSSLVVKFADTDKER 93
Score = 88 (36.0 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 134 ERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSH 192
+++R G LF+ L ++ + E+ ++F P+G V + D QS+ GFV + +
Sbjct: 267 QQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDN 326
Query: 193 RDMALAAINALNG 205
A AAI A+NG
Sbjct: 327 PASAQAAIQAMNG 339
Score = 39 (18.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 663 GYTQLPPVAAGSVNNPTRFQQGL 685
G+T LPP A G F G+
Sbjct: 197 GFTGLPPQANGQPAAEAVFANGI 219
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 228 (85.3 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 59/179 (32%), Positives = 94/179 (52%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D D L V +P+ +E++R LF G V LI+DK G G F+ Y T+
Sbjct: 12 DCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
++A+RAI L N L I+V YA E + + L++ L + T+K+VE++F
Sbjct: 72 KDAERAISTL-NGLRLQSKT--IKVSYARPSSEVIK--DANLYISGLPRTMTQKDVEDMF 126
Query: 164 SPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
S +GR+ + ++ D+ SRG F+++ R A AI + NG + G +P+TV+FA
Sbjct: 127 SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 228 (85.3 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 59/179 (32%), Positives = 94/179 (52%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D D L V +P+ +E++R LF G V LI+DK G G F+ Y T+
Sbjct: 12 DCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
++A+RAI L N L I+V YA E + + L++ L + T+K+VE++F
Sbjct: 72 KDAERAISTL-NGLRLQSKT--IKVSYARPSSEVIK--DANLYISGLPRTMTQKDVEDMF 126
Query: 164 SPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
S +GR+ + ++ D+ SRG F+++ R A AI + NG + G +P+TV+FA
Sbjct: 127 SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 227 (85.0 bits), Expect = 7.4e-17, P = 7.4e-17
Identities = 58/179 (32%), Positives = 94/179 (52%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D D L V +P+ ++++R LF G V LI+DK G G F+ Y T+
Sbjct: 12 DCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
++A+RAI L N L I+V YA E + + L++ L + T+K+VE++F
Sbjct: 72 KDAERAINTL-NGLRLQSKT--IKVSYARPSSEVIK--DANLYISGLPRNMTQKDVEDMF 126
Query: 164 SPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
S +GR+ + ++ D+ SRG F+++ R A AI + NG + G +P+TV+FA
Sbjct: 127 SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 232 (86.7 bits), Expect = 8.5e-17, P = 8.5e-17
Identities = 62/186 (33%), Positives = 103/186 (55%)
Query: 42 SP-DLVDGSSFAK--LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFI 98
SP ++ +GS +K L V +P+ +E+++ LF G + L++DK TGQ G F+
Sbjct: 55 SPVEMPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 114
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEK 157
Y ++A++AI L+ L I+V YA R ++ + L+V L K T+K
Sbjct: 115 NYMEPKDAEKAINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQK 168
Query: 158 EVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPL 216
E+E++FS +GR+ ++ D++ SRG GF+++ R A AI LNG G +P+
Sbjct: 169 ELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNG-QKPPGATEPI 227
Query: 217 TVRFAD 222
TV+FA+
Sbjct: 228 TVKFAN 233
Score = 142 (55.0 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 28/86 (32%), Positives = 50/86 (58%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF + G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 154 ANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIK 213
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q PG PI V++A+ ++
Sbjct: 214 GLNGQKP-PGATEPITVKFANNPSQK 238
Score = 103 (41.3 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 367 NG-YRL-G-DRVLQVSFKTNK 384
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 229 (85.7 bits), Expect = 8.7e-17, P = 8.7e-17
Identities = 59/175 (33%), Positives = 95/175 (54%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +E+++ LF G + L++DK TGQ G F+ Y ++A++A
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGR 168
I L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR
Sbjct: 97 INTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 169 VEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
+ ++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 151 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG-QKPPGATEPITVKFAN 204
Score = 143 (55.4 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q PG PI V++A+ ++
Sbjct: 185 GLNGQKP-PGATEPITVKFANNPSQK 209
Score = 101 (40.6 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 325 NG-YRL-G-DRVLQVSFKTNK 342
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 234 (87.4 bits), Expect = 9.8e-17, P = 9.8e-17
Identities = 60/189 (31%), Positives = 97/189 (51%)
Query: 42 SPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYA 101
+P++ G S L + +P+ +E++R LF G + L++DK TGQ G F+ Y
Sbjct: 32 APNVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYV 91
Query: 102 TSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEE 161
E+A RA+ + N L I+V YA +++ L+V + K T E+E
Sbjct: 92 REEDALRAVSSF-NGLRLQNKT--IKVSYARPSNDQIKGSN--LYVSGIPKSMTLHELES 146
Query: 162 IFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRF 220
IF P+G++ ++ D + S+G GFV++ +D A AI LNG GC + +TV+F
Sbjct: 147 IFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPS-GCSEQITVKF 205
Query: 221 AD-PKRPRP 228
A+ P P
Sbjct: 206 ANNPASNNP 214
Score = 122 (48.0 bits), Expect = 0.00027, P = 0.00027
Identities = 30/96 (31%), Positives = 51/96 (53%)
Query: 129 RYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGF 187
RY +G + L + L + T++EV +F+ G +E L+RD++ QS G GF
Sbjct: 28 RYCSAPNVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGF 87
Query: 188 VKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
V Y + AL A+++ NG+ R ++ + V +A P
Sbjct: 88 VNYVREEDALRAVSSFNGL---RLQNKTIKVSYARP 120
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 230 (86.0 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 59/182 (32%), Positives = 98/182 (53%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +++ + LF G++ L++DK TGQ G F+ Y+ +AD+A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGR 168
I L+ L I+V YA R ++ + L+V L K ++KE+E++FS YGR
Sbjct: 97 INTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR 150
Query: 169 VEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++ D++ SRG GF+++ R A AI LNG + G +P+TV+FA+ +
Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQK 209
Query: 228 PG 229
G
Sbjct: 210 TG 211
Score = 148 (57.2 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 33/104 (31%), Positives = 59/104 (56%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG-AVEYKLFVGSLNKQA 154
L+ Q L G PI V++A+ ++ G A+ L+ S + A
Sbjct: 185 GLNGQKPL-GAAEPITVKFANNPSQKTGQALLTHLYQSSARRYA 227
Score = 105 (42.0 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 204 NGIYTMRGCDQPLTVRFADPKR 225
NG Y + G ++ L V F K+
Sbjct: 346 NG-YRL-G-ERVLQVSFKTSKQ 364
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 230 (86.0 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 59/182 (32%), Positives = 98/182 (53%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +++ + LF G++ L++DK TGQ G F+ Y+ +AD+A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGR 168
I L+ L I+V YA R ++ + L+V L K ++KE+E++FS YGR
Sbjct: 97 INTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR 150
Query: 169 VEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++ D++ SRG GF+++ R A AI LNG + G +P+TV+FA+ +
Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQK 209
Query: 228 PG 229
G
Sbjct: 210 TG 211
Score = 148 (57.2 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 33/104 (31%), Positives = 59/104 (56%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG-AVEYKLFVGSLNKQA 154
L+ Q L G PI V++A+ ++ G A+ L+ S + A
Sbjct: 185 GLNGQKPL-GAAEPITVKFANNPSQKTGQALLTHLYQSSARRYA 227
Score = 105 (42.0 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 204 NGIYTMRGCDQPLTVRFADPKR 225
NG Y + G ++ L V F K+
Sbjct: 346 NG-YRL-G-ERVLQVSFKTSKQ 364
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 230 (86.0 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 59/182 (32%), Positives = 98/182 (53%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +++ + LF G++ L++DK TGQ G F+ Y+ +AD+A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGR 168
I L+ L I+V YA R ++ + L+V L K ++KE+E++FS YGR
Sbjct: 97 INTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR 150
Query: 169 VEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++ D++ SRG GF+++ R A AI LNG + G +P+TV+FA+ +
Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQK 209
Query: 228 PG 229
G
Sbjct: 210 TG 211
Score = 160 (61.4 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 44/162 (27%), Positives = 85/162 (52%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG-AVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
L+ Q L G PI V++A+ ++ G A+ L+ S + A + + R++
Sbjct: 185 GLNGQKPL-GAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQ---TQRFRLD 240
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGC 212
++ M +K S ++S +A+ ++ L G+ +RGC
Sbjct: 241 NLLNMAYGVKSSPLSLIARFS--PIAIDGMSGLAGVGPVRGC 280
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 230 (86.0 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 59/182 (32%), Positives = 98/182 (53%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +++ + LF G++ L++DK TGQ G F+ Y+ +AD+A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGR 168
I L+ L I+V YA R ++ + L+V L K ++KE+E++FS YGR
Sbjct: 97 INTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR 150
Query: 169 VEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++ D++ SRG GF+++ R A AI LNG + G +P+TV+FA+ +
Sbjct: 151 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQK 209
Query: 228 PG 229
G
Sbjct: 210 TG 211
Score = 150 (57.9 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 33/104 (31%), Positives = 60/104 (57%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG-AVEYKLFVGSLNKQA 154
L+ Q L G PI V++A+ ++ G A+ +L+ S + A
Sbjct: 185 GLNGQKPL-GAAEPITVKFANNPSQKTGQALLTQLYQSSARRYA 227
Score = 105 (42.0 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 204 NGIYTMRGCDQPLTVRFADPKR 225
NG Y + G ++ L V F K+
Sbjct: 347 NG-YRL-G-ERVLQVSFKTSKQ 365
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 229 (85.7 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 59/175 (33%), Positives = 95/175 (54%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +E+++ LF G + L++DK TGQ G F+ Y ++A++A
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGR 168
I L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR
Sbjct: 97 INTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 169 VEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
+ ++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 151 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG-QKPPGATEPITVKFAN 204
Score = 143 (55.4 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q PG PI V++A+ ++
Sbjct: 185 GLNGQKP-PGATEPITVKFANNPSQK 209
Score = 101 (40.6 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 338 NG-YRL-G-DRVLQVSFKTNK 355
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 229 (85.7 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 59/175 (33%), Positives = 95/175 (54%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +E+++ LF G + L++DK TGQ G F+ Y ++A++A
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGR 168
I L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR
Sbjct: 97 INTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 169 VEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
+ ++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 151 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG-QKPPGATEPITVKFAN 204
Score = 143 (55.4 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q PG PI V++A+ ++
Sbjct: 185 GLNGQKP-PGATEPITVKFANNPSQK 209
Score = 101 (40.6 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 339 NG-YRL-G-DRVLQVSFKTNK 356
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 229 (85.7 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 59/182 (32%), Positives = 97/182 (53%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +++ + LF G++ L++DK TGQ G F+ Y+ +AD+A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGR 168
I L+ L I+V YA R ++ + L+V L K ++KE+E++FS YGR
Sbjct: 97 INTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR 150
Query: 169 VEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++ D+ SRG GF+++ R A AI LNG + G +P+TV+FA+ +
Sbjct: 151 IITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQK 209
Query: 228 PG 229
G
Sbjct: 210 TG 211
Score = 149 (57.5 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 33/104 (31%), Positives = 59/104 (56%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG-AVEYKLFVGSLNKQA 154
L+ Q L G PI V++A+ ++ G A+ L+ S + A
Sbjct: 185 GLNGQKPL-GAAEPITVKFANNPSQKTGQALLTHLYQSSARRYA 227
Score = 105 (42.0 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 204 NGIYTMRGCDQPLTVRFADPKR 225
NG Y + G ++ L V F K+
Sbjct: 346 NG-YRL-G-ERVLQVSFKTSKQ 364
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 229 (85.7 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 59/182 (32%), Positives = 97/182 (53%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +++ + LF G++ L++DK TGQ G F+ Y+ +AD+A
Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGR 168
I L+ L I+V YA R ++ + L+V L K ++KE+E++FS YGR
Sbjct: 97 INTLNG---LKLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGR 150
Query: 169 VEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
+ ++ D+ SRG GF+++ R A AI LNG + G +P+TV+FA+ +
Sbjct: 151 IITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQK 209
Query: 228 PG 229
G
Sbjct: 210 TG 211
Score = 149 (57.5 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 33/104 (31%), Positives = 59/104 (56%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLG-AVEYKLFVGSLNKQA 154
L+ Q L G PI V++A+ ++ G A+ L+ S + A
Sbjct: 185 GLNGQKPL-GAAEPITVKFANNPSQKTGQALLTHLYQSSARRYA 227
Score = 105 (42.0 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L+ +A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 204 NGIYTMRGCDQPLTVRFADPKR 225
NG Y + G ++ L V F K+
Sbjct: 346 NG-YRL-G-ERVLQVSFKTSKQ 364
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 226 (84.6 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 58/179 (32%), Positives = 94/179 (52%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D D L V +P+ ++++R LF G V LI+DK G G F+ Y T+
Sbjct: 20 DCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 79
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
++A+RAI L N L I+V YA E + + L++ L + T+K+VE++F
Sbjct: 80 KDAERAINTL-NGLRLQSKT--IKVSYARPSSEVIK--DANLYISGLPRTMTQKDVEDMF 134
Query: 164 SPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
S +GR+ + ++ D+ SRG F+++ R A AI + NG + G +P+TV+FA
Sbjct: 135 SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 192
>UNIPROTKB|F1SAI1 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381
OMA:SAMESIN EMBL:CU442705 EMBL:FP102263 Ensembl:ENSSSCT00000004150
Uniprot:F1SAI1
Length = 371
Score = 195 (73.7 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 40/84 (47%), Positives = 52/84 (61%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203
KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL
Sbjct: 20 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 79
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
+G TM G L V+FAD + R
Sbjct: 80 HGSQTMPGASSSLVVKFADTDKER 103
Score = 190 (71.9 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R LFE GN+ E +++ G +GC F+KY++ EA AI A
Sbjct: 20 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINA 78
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 79 LHGSQTMPGASSSLVVKFADTDKER 103
Score = 84 (34.6 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 134 ERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHR 193
+++R G LF+ L ++ + E+ ++F P+G D QS+ GFV + +
Sbjct: 278 QQQREGPEGCNLFICHLPQEFGDAELMQMFLPFGNGISSKAFVDRTNQSKCFGFVSFDNP 337
Query: 194 DMALAAINALNG 205
A AI A+NG
Sbjct: 338 ASAQTAIQAMNG 349
Score = 39 (18.8 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 663 GYTQLPPVAAGSVNNPTRFQQGL 685
G+T LPP A G F G+
Sbjct: 207 GFTGLPPQANGQPAAEAVFANGI 229
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 232 (86.7 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 63/176 (35%), Positives = 94/176 (53%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+T +++IR LF G V LI+DK TGQ G F+ Y E+A++AI AL
Sbjct: 112 LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL 171
Query: 114 HNQHTLPGGVGPIQVRYADGERERL-GAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
N L I+V A E + GA L+V L K T+ ++E +FSPYG++
Sbjct: 172 -NGLRLQNKT--IKVSIARPSSESIKGA---NLYVSGLPKNMTQSDLESLFSPYGKIITS 225
Query: 173 YLMRDELKQ------SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ D + S+G GF+++ R A AI LNG T + +P+TV+FA+
Sbjct: 226 RILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGT-TPKNSTEPITVKFAN 280
Score = 120 (47.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ-----QGC 95
PS + + G A L+V +PK + D+ LF +G +I ++ D TG+ +G
Sbjct: 188 PSSESIKG---ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGV 244
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD 132
FI++ EADRAI+ L N T PI V++A+
Sbjct: 245 GFIRFDQRFEADRAIKEL-NGTTPKNSTEPITVKFAN 280
Score = 103 (41.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L E + ++F P+G V+ V ++RD + + +G GFV ++ + A+ AI +L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG YT+ G ++ L V F K
Sbjct: 423 NG-YTL-G-NRVLQVSFKTNK 440
>UNIPROTKB|K7EQ97 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000587819 Uniprot:K7EQ97
Length = 154
Score = 212 (79.7 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 48/103 (46%), Positives = 62/103 (60%)
Query: 125 PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRG 184
PIQV+ AD E G + KLFVG LNKQ +E +V +F +G +E+ ++R S+G
Sbjct: 4 PIQVKPADSESR--G--DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKG 59
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
C FVKYS A AAINAL+G TM G L V+FAD + R
Sbjct: 60 CAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKER 102
Score = 190 (71.9 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R LFE GN+ E +++ G +GC F+KY++ EA AI A
Sbjct: 19 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINA 77
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 78 LHGSQTMPGASSSLVVKFADTDKER 102
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 229 (85.7 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 59/175 (33%), Positives = 95/175 (54%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +E+++ LF G + L++DK TGQ G F+ Y ++A++A
Sbjct: 65 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 124
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGR 168
I L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR
Sbjct: 125 INTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 178
Query: 169 VEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
+ ++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 179 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG-QKPPGATEPITVKFAN 232
Score = 143 (55.4 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 212
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q PG PI V++A+ ++
Sbjct: 213 GLNGQKP-PGATEPITVKFANNPSQK 237
Score = 101 (40.6 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 366 NG-YRL-G-DRVLQVSFKTNK 383
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 229 (85.7 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 59/175 (33%), Positives = 95/175 (54%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +E+++ LF G + L++DK TGQ G F+ Y ++A++A
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 125
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGR 168
I L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR
Sbjct: 126 INTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 179
Query: 169 VEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
+ ++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 180 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG-QKPPGATEPITVKFAN 233
Score = 143 (55.4 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 154 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q PG PI V++A+ ++
Sbjct: 214 GLNGQKP-PGATEPITVKFANNPSQK 238
Score = 101 (40.6 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 367 NG-YRL-G-DRVLQVSFKTNK 384
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 229 (85.7 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 59/175 (33%), Positives = 95/175 (54%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +E+++ LF G + L++DK TGQ G F+ Y ++A++A
Sbjct: 66 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 125
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGR 168
I L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR
Sbjct: 126 INTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 179
Query: 169 VEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
+ ++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 180 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG-QKPPGATEPITVKFAN 233
Score = 143 (55.4 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 154 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q PG PI V++A+ ++
Sbjct: 214 GLNGQKP-PGATEPITVKFANNPSQK 238
Score = 96 (38.9 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 204 NG 205
NG
Sbjct: 368 NG 369
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 224 (83.9 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 56/169 (33%), Positives = 92/169 (54%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ ++++R LF G V LI+DK G G F+ Y T+++A+RAI L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
N L I+V YA E + + L++ L + T+K+VE++FS +GR+ +
Sbjct: 82 -NGLRLQSKT--IKVSYARPSSEVIK--DANLYISGLPRTMTQKDVEDMFSRFGRIINSR 136
Query: 174 LMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
++ D+ SRG F+++ R A AI + NG + G +P+TV+FA
Sbjct: 137 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184
Score = 139 (54.0 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 28/91 (30%), Positives = 50/91 (54%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PS +++ A L++ +P+T ++D+ +F G +I ++ D+ TG +G FI++
Sbjct: 98 PSSEVIKD---ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131
EA+ AI + N H PG PI V++A
Sbjct: 155 DKRSEAEEAITSF-NGHKPPGSSEPITVKFA 184
Score = 97 (39.2 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+F+ +L + A E + ++F P+G V +V ++RD + +G GFV ++ + A AI +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 306 NG-YRL-G-DKILQVSFKTNK 323
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 224 (83.9 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 58/179 (32%), Positives = 93/179 (51%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D D L V +P+ ++++R LF G V LI+DK G G F+ Y T+
Sbjct: 12 DCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
++A+RAI L N L I+V YA E + + L++ L + T+K+VE++F
Sbjct: 72 KDAERAINTL-NGLRLQSKT--IKVSYARPSSEVIK--DANLYISGLPRSMTQKDVEDMF 126
Query: 164 SPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
S +GR+ + ++ D+ SRG F+++ R A AI NG + G +P+TV+FA
Sbjct: 127 SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG-HKPPGSSEPITVKFA 184
>UNIPROTKB|F1P5J4 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02051058 EMBL:AADN02051059
IPI:IPI00591656 Ensembl:ENSGALT00000003051 Uniprot:F1P5J4
Length = 354
Score = 189 (71.6 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 38/84 (45%), Positives = 53/84 (63%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203
KLFVG L KQ +E +V +F P+G++E+ ++R S+GC FVKYS A AAI++L
Sbjct: 4 KLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASKGCAFVKYSSHAEAQAAISSL 63
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
+G TM G L V+FAD + R
Sbjct: 64 HGSQTMPGASSSLVVKFADTDKER 87
Score = 179 (68.1 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 34/85 (40%), Positives = 52/85 (61%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R LFE G + E +++ G +GC F+KY++ EA AI +
Sbjct: 4 KLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPD-GASKGCAFVKYSSHAEAQAAISS 62
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 63 LHGSQTMPGASSSLVVKFADTDKER 87
Score = 92 (37.4 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 134 ERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSH 192
+++R G LF+ L ++ + E+ ++F P+G V + D QS+ GFV + +
Sbjct: 260 QQQREGPEGCNLFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDN 319
Query: 193 RDMALAAINALNG 205
A AAI A+NG
Sbjct: 320 PTSAQAAIQAMNG 332
Score = 39 (18.8 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 663 GYTQLPPVAAGSVNNPTRFQQGL 685
G++ LPP G + T + G+
Sbjct: 190 GFSPLPPQTNGQPTSETIYTNGI 212
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 227 (85.0 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 58/175 (33%), Positives = 95/175 (54%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P++ +E+++ LF G + L++DK TGQ G F+ Y ++A++A
Sbjct: 65 SKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKA 124
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGR 168
I L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR
Sbjct: 125 INTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 178
Query: 169 VEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
+ ++ D++ SRG GF+++ R A AI LNG +P+TV+FA+
Sbjct: 179 IITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNG-QKPPAATEPITVKFAN 232
Score = 140 (54.3 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIK 212
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q P PI V++A+ ++
Sbjct: 213 GLNGQKP-PAATEPITVKFANNPSQK 237
Score = 101 (40.6 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 367 NG-YRL-G-DRVLQVSFKTNK 384
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 224 (83.9 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 56/169 (33%), Positives = 92/169 (54%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ ++++R LF G V LI+DK G G F+ Y T+++A+RAI L
Sbjct: 49 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 108
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
N L I+V YA E + + L++ L + T+K+VE++FS +GR+ +
Sbjct: 109 -NGLRLQSKT--IKVSYARPSSEVIK--DANLYISGLPRTMTQKDVEDMFSRFGRIINSR 163
Query: 174 LMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
++ D+ SRG F+++ R A AI + NG + G +P+TV+FA
Sbjct: 164 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 211
Score = 139 (54.0 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 28/91 (30%), Positives = 50/91 (54%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PS +++ A L++ +P+T ++D+ +F G +I ++ D+ TG +G FI++
Sbjct: 125 PSSEVIKD---ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 181
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131
EA+ AI + N H PG PI V++A
Sbjct: 182 DKRSEAEEAITSF-NGHKPPGSSEPITVKFA 211
Score = 97 (39.2 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+F+ +L + A E + ++F P+G V +V ++RD + +G GFV ++ + A AI +L
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 333 NG-YRL-G-DKILQVSFKTNK 350
>RGD|1307630 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307630 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026 GO:GO:0006376
GeneTree:ENSGT00560000076837 GO:GO:0000381 IPI:IPI00870309
Ensembl:ENSRNOT00000061151 ArrayExpress:F1M6I9 Uniprot:F1M6I9
Length = 355
Score = 195 (73.7 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 40/84 (47%), Positives = 52/84 (61%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203
KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL
Sbjct: 2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 61
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
+G TM G L V+FAD + R
Sbjct: 62 HGSQTMPGASSSLVVKFADTDKER 85
Score = 190 (71.9 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R LFE GN+ E +++ G +GC F+KY++ EA AI A
Sbjct: 2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINA 60
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 61 LHGSQTMPGASSSLVVKFADTDKER 85
Score = 78 (32.5 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 134 ERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSH 192
+++R G L + L ++ + E+ ++F P+G V + D QS+ GFV + +
Sbjct: 261 QQQREGPEGCNLLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDN 320
Query: 193 RDMALAAINALNG 205
A AI A+NG
Sbjct: 321 PASAQTAIQAMNG 333
Score = 39 (18.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 663 GYTQLPPVAAGSVNNPTRFQQGL 685
G+T LPP A G F G+
Sbjct: 189 GFTGLPPQANGQPAAEAVFANGI 211
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 206 (77.6 bits), Expect = 7.8e-16, P = 7.8e-16
Identities = 53/158 (33%), Positives = 85/158 (53%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +E+++ LF G + L++DK TGQ G F+ Y ++A++A
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGR 168
I L+ L I+V YA R ++ + L+V L K T+KE+E++FS YGR
Sbjct: 97 INTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR 150
Query: 169 VEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNG 205
+ ++ D++ SRG GF+++ R A AI LNG
Sbjct: 151 IITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 117 (46.2 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQ 116
L+ Q
Sbjct: 185 GLNGQ 189
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 222 (83.2 bits), Expect = 8.3e-16, P = 8.3e-16
Identities = 56/166 (33%), Positives = 92/166 (55%)
Query: 59 VPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118
+P+ +E+++ LF G + L++DK TGQ G F+ Y ++A++AI L+
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG--- 102
Query: 119 LPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD 177
L I+V YA R ++ + L+V L K T+KE+E++FS YGR+ ++ D
Sbjct: 103 LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 159
Query: 178 ELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 160 QVTGISRGVGFIRFDKRIEAEEAIKGLNG-QKPPGATEPITVKFAN 204
Score = 143 (55.4 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q PG PI V++A+ ++
Sbjct: 185 GLNGQKP-PGATEPITVKFANNPSQK 209
Score = 101 (40.6 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 338 NG-YRL-G-DRVLQVSFKTNK 355
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 222 (83.2 bits), Expect = 8.3e-16, P = 8.3e-16
Identities = 56/166 (33%), Positives = 92/166 (55%)
Query: 59 VPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHT 118
+P+ +E+++ LF G + L++DK TGQ G F+ Y ++A++AI L+
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG--- 102
Query: 119 LPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD 177
L I+V YA R ++ + L+V L K T+KE+E++FS YGR+ ++ D
Sbjct: 103 LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 159
Query: 178 ELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 160 QVTGISRGVGFIRFDKRIEAEEAIKGLNG-QKPPGATEPITVKFAN 204
Score = 143 (55.4 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q PG PI V++A+ ++
Sbjct: 185 GLNGQKP-PGATEPITVKFANNPSQK 209
Score = 101 (40.6 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 338 NG-YRL-G-DRVLQVSFKTNK 355
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 224 (83.9 bits), Expect = 9.9e-16, P = 9.9e-16
Identities = 75/267 (28%), Positives = 125/267 (46%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + + E + LF + G V+ + KD+ TGQ QG F+++ + E+AD AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV-E 170
+ N L G PI+V A + L V +F+G+L+ + EK + + FS +G + +
Sbjct: 73 IM-NMIKLYGK--PIRVNKASAHNKNLD-VGANIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRPG 229
+MRD + S+G F+ ++ D + AAI A+NG Y C++P+TV +A K+ G
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAF-KKDSKG 184
Query: 230 DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITDQIPQNAWHPMSPRNMGP-LSNPGIRG 288
+ +P P+ +GP ++ PG+
Sbjct: 185 ERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSVPT----PVVTA-LGPGVTPPGLPP 239
Query: 289 FGNQLPPRSGDLGMPLNPGGPADVPLP 315
G+ PP MP PG P +P P
Sbjct: 240 PGSFPPPVPPPGAMP--PGMPPAMPPP 264
>UNIPROTKB|K7EJK3 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589229 Uniprot:K7EJK3
Length = 162
Score = 203 (76.5 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 49/111 (44%), Positives = 64/111 (57%)
Query: 125 PIQVRYADGERERLGAV--------EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMR 176
PIQV+ AD E R G+ + KLFVG LNKQ +E +V +F +G +E+ ++R
Sbjct: 4 PIQVKPADSE-SRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILR 62
Query: 177 DELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
S+GC FVKYS A AAINAL+G TM G L V+FAD + R
Sbjct: 63 GPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKER 113
Score = 196 (74.1 bits), Expect = 9.5e-15, P = 9.5e-15
Identities = 41/100 (41%), Positives = 58/100 (58%)
Query: 38 RGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCF 97
RGG S S KLFVG + K E+D+R LFE GN+ E +++ G +GC F
Sbjct: 15 RGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAF 73
Query: 98 IKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERER 137
+KY++ EA AI ALH T+PG + V++AD ++ER
Sbjct: 74 VKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKER 113
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 216 (81.1 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 58/188 (30%), Positives = 96/188 (51%)
Query: 36 SGRGGPSPDLV-DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
+G G D+ D L V +P+ ++++R LF G V LI+DK G G
Sbjct: 3 NGYGDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLG 62
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
F+ Y +++A+RAI L N L I+V A E + + L++ L +
Sbjct: 63 YGFVNYLNAKDAERAINTL-NGLRLQSKT--IKVSVARPSSESIK--DANLYISGLPRTM 117
Query: 155 TEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCD 213
T+K+VE++F P+GR+ + ++ D+ SRG F+++ R A AI + NG + G
Sbjct: 118 TQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG-HKPPGSS 176
Query: 214 QPLTVRFA 221
+P+TV+FA
Sbjct: 177 EPITVKFA 184
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 220 (82.5 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 59/176 (33%), Positives = 95/176 (53%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT-GQQQGCCFIKYATSEEADR 108
S L V +P+ +E+++ LF G + L++DK T GQ G F+ Y ++A++
Sbjct: 64 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEK 123
Query: 109 AIRALHNQHTLPGGVGPIQVRYADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYG 167
AI L+ L I+V YA R ++ + L+V L K T+KE+E++FS YG
Sbjct: 124 AINTLNG---LRLQTKTIKVSYA---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYG 177
Query: 168 RVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
R+ ++ D++ SRG GF+++ R A AI LNG G +P+TV+FA+
Sbjct: 178 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPPGATEPITVKFAN 232
Score = 145 (56.1 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 28/87 (32%), Positives = 52/87 (59%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 212
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERL 138
L+ Q PG PI V++A+ +++
Sbjct: 213 GLNGQKP-PGATEPITVKFANNPSQKV 238
Score = 102 (41.0 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 368 NG-YRL-G-DRVLQVSFKTSK 385
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 213 (80.0 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 54/176 (30%), Positives = 94/176 (53%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L V +P+ ++++R LF G V LI+DK G G F+ Y +++A+RAI L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 114 HNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
N L I+V +A E + + L++ L + T+K+VE++F P+G + +
Sbjct: 82 -NGLRLQSKT--IKVSFARPSSETIK--DANLYISGLPRTMTQKDVEDMFLPFGHIINSR 136
Query: 174 LMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA-DPKRPR 227
++ D+ SRG F+++ R A AI + NG + G +P+TV+FA +P + +
Sbjct: 137 VLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG-HKPPGSSEPITVKFAANPNQSK 191
Score = 136 (52.9 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L++ +P+T ++D+ +F G++I ++ D+ TG +G FI++ EA+ AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAI- 164
Query: 112 ALHNQHTLPGGVGPIQVRYA 131
A N H PG PI V++A
Sbjct: 165 ASFNGHKPPGSSEPITVKFA 184
Score = 100 (40.3 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+F+ +L + A E + ++F P+G V +V ++RD + +G GFV ++ + A AI +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 306 NG-YRL-G-DKTLQVSFKTSK 323
>UNIPROTKB|B4DFI3 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
HOGENOM:HOG000004754 EMBL:AC005331 EMBL:AC006505 EMBL:AC010649
EMBL:AC123911 UniGene:Hs.655747 HGNC:HGNC:14058 EMBL:AK294109
IPI:IPI00645373 SMR:B4DFI3 STRING:B4DFI3 Ensembl:ENST00000334293
Uniprot:B4DFI3
Length = 320
Score = 212 (79.7 bits), Expect = 5.6e-15, P = 5.6e-15
Identities = 46/103 (44%), Positives = 64/103 (62%)
Query: 125 PIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRG 184
PIQV+ AD E G + KLFVG LNKQ +E++V +F P+G +++ ++R S+G
Sbjct: 4 PIQVKPADSESR--GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKG 61
Query: 185 CGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
C FVK+S A AAI+AL+G TM G L V+FAD + R
Sbjct: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKER 104
Score = 172 (65.6 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 41/119 (34%), Positives = 61/119 (51%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
G KLFVG + K EED+ LF+ G + E +++ G +GC F+K+++ EA
Sbjct: 16 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQ 74
Query: 108 RAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
AI ALH T+PG + V++AD ++ER + VG L + FSPY
Sbjct: 75 AAIHALHGSQTMPGASSSLVVKFADTDKERT-LRRMQQMVGQLGILTPSLTLP--FSPY 130
>UNIPROTKB|E1C131 [details] [associations]
symbol:E1C131 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02067637 EMBL:AADN02067638
EMBL:AADN02067639 EMBL:AADN02067640 EMBL:AADN02067641
EMBL:AADN02067642 EMBL:AADN02067643 EMBL:AADN02067644
EMBL:AADN02067645 EMBL:AADN02067646 EMBL:AADN02067647
EMBL:AADN02067648 EMBL:AADN02067649 EMBL:AADN02067650
EMBL:AADN02067651 EMBL:AADN02067652 EMBL:AADN02067653
EMBL:AADN02067654 EMBL:AADN02067655 EMBL:AADN02067656
EMBL:AADN02067657 EMBL:AADN02067658 EMBL:AADN02067659
IPI:IPI00822398 ProteinModelPortal:E1C131
Ensembl:ENSGALT00000029259 OMA:YCHRESA Uniprot:E1C131
Length = 123
Score = 196 (74.1 bits), Expect = 9.5e-15, P = 9.5e-15
Identities = 38/93 (40%), Positives = 54/93 (58%)
Query: 30 GQKRGFS-GRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKK 88
G G + G PS + KLF+G +P+ E+D++PLFEE G + E+ ++KD+
Sbjct: 29 GHMNGLNHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRF 88
Query: 89 TGQQQGCCFIKYATSEEADRAIRALHNQHTLPG 121
TG +GC F+ Y E A +A ALH Q TLPG
Sbjct: 89 TGMHKGCAFLTYCERESALKAQSALHEQKTLPG 121
Score = 126 (49.4 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 30/120 (25%), Positives = 62/120 (51%)
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQ-VRYADGERERLGAVEY---KLFVGSLNK 152
+IK AT +L + H+ P G + + ++ G + ++ KLF+G + +
Sbjct: 2 YIKMATLANGQPDNTSLSSNHSNPSTNGHMNGLNHSPGNPSTIPMKDHDAIKLFIGQIPR 61
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRG 211
EK+++ +F +G++ ++ +++D +GC F+ Y R+ AL A +AL+ T+ G
Sbjct: 62 NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 121
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 211 (79.3 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 58/179 (32%), Positives = 91/179 (50%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
+L+D + L V +P+ ++++R LF G V LI+DK G G F+ Y
Sbjct: 28 ELIDSKT--NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNP 85
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
+A+RAI L N L I+V YA + + + L++ L K T+K+VEE+F
Sbjct: 86 NDAERAISTL-NGLRLQSKT--IKVSYARPSSDSIK--DANLYISGLPKTMTQKDVEEMF 140
Query: 164 SPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
YGR+ + ++ D+ SRG F+++ R A AI LNG G + +TV+FA
Sbjct: 141 GRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNG-QKPPGAAEQMTVKFA 198
Score = 128 (50.1 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 27/91 (29%), Positives = 50/91 (54%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
PS D + A L++ +PKT ++D+ +F +G +I ++ D+ +G +G FI++
Sbjct: 112 PSSDSIKD---ANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRF 168
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131
EA+ AI+ L+ Q PG + V++A
Sbjct: 169 DKRAEAEDAIKDLNGQKP-PGAAEQMTVKFA 198
Score = 105 (42.0 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+F+ +L + A E + ++F P+G V +V ++RD + +G GFV +H + A AI +L
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 320 NG-YRL-G-DKILQVSFKTSK 337
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 211 (79.3 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 61/193 (31%), Positives = 103/193 (53%)
Query: 34 GFS-GRGGPSPDLVDG--SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG 90
G S G GG S DL++ +S L V +P+ + ++ LF G + +++D KTG
Sbjct: 105 GLSLGSGG-SDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTG 163
Query: 91 QQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSL 150
G F+ + + ++ RAI+ L N T+ ++V YA E + + L+V +L
Sbjct: 164 YSFGYAFVDFTSEMDSQRAIKVL-NGITVRNK--RLKVSYARPGGESIK--DTNLYVTNL 218
Query: 151 NKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTM 209
+ T+ +++ IF YG + ++RD+L + RG FV+Y+ R+ A AI+ALN +
Sbjct: 219 PRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP- 277
Query: 210 RGCDQPLTVRFAD 222
G QPL+VR A+
Sbjct: 278 EGGSQPLSVRLAE 290
Score = 149 (57.5 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 31/96 (32%), Positives = 59/96 (61%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L+V ++P+T ++ + +F ++G++++ +++DK TG+ +G F++Y EEA AI AL
Sbjct: 213 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 272
Query: 114 HNQHTLP-GGVGPIQVRYADGERERLGAVEYKLFVG 148
+N +P GG P+ VR A+ E + A + +G
Sbjct: 273 NN--VIPEGGSQPLSVRLAE-EHGKAKAAHFMSQMG 305
>UNIPROTKB|F6UBL3 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
EMBL:AC009690 IPI:IPI00909307 HGNC:HGNC:14059
Ensembl:ENST00000437872 Bgee:F6UBL3 Uniprot:F6UBL3
Length = 133
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 36/82 (43%), Positives = 53/82 (64%)
Query: 40 GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIK 99
GP+ + D + KLFVG +P+ E+D++PLFEE G + E+ ++KD+ TG +GC F+
Sbjct: 6 GPAVPMKDHDAI-KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLT 64
Query: 100 YATSEEADRAIRALHNQHTLPG 121
Y + A +A ALH Q TLPG
Sbjct: 65 YCARDSALKAQSALHEQKTLPG 86
Score = 116 (45.9 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 24/69 (34%), Positives = 43/69 (62%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINA 202
KLFVG + + E++++ +F +GR+ ++ +++D L +GC F+ Y RD AL A +A
Sbjct: 18 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 77
Query: 203 LNGIYTMRG 211
L+ T+ G
Sbjct: 78 LHEQKTLPG 86
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 53/150 (35%), Positives = 85/150 (56%)
Query: 85 KDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK 144
KD+ TGQ QG F+++ + E+AD AI+ + N L G PI+V A + L V
Sbjct: 3 KDRVTGQHQGYGFVEFLSEEDADYAIKIM-NMIKLYGK--PIRVNKASAHNKNLD-VGAN 58
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRV-EDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINA 202
+F+G+L+ + EK + + FS +G + + +MRD + S+G F+ ++ D + AAI A
Sbjct: 59 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 118
Query: 203 LNGIYTMRGCDQPLTVRFA---DPKRPRPG 229
+NG Y C++P+TV +A D K R G
Sbjct: 119 MNGQYL---CNRPITVSYAFKKDSKGERHG 145
>UNIPROTKB|E1BIM7 [details] [associations]
symbol:LOC100851458 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:DAAA02035244
IPI:IPI00924044 ProteinModelPortal:E1BIM7
Ensembl:ENSBTAT00000011768 ArrayExpress:E1BIM7 Uniprot:E1BIM7
Length = 397
Score = 212 (79.7 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 43/104 (41%), Positives = 67/104 (64%)
Query: 125 PIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSR 183
PIQ++ AD E+ AVE KLF+G ++K+ E ++ +FSP+G++E+ ++R SR
Sbjct: 4 PIQMKPADSEKSN--AVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 61
Query: 184 GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
GC FV +S R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 62 GCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDK 105
Score = 159 (61.0 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G V K E DIR +F G + E +++ G +GC F+ ++T A AI+A
Sbjct: 22 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNAIKA 80
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
+H T+ G PI V++AD ++++
Sbjct: 81 MHQSQTMEGCSSPIVVKFADTQKDK 105
Score = 89 (36.4 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 126 IQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGC 185
+Q + A G ++ G LF+ L ++ ++++ ++F P+G V + D+ C
Sbjct: 296 LQQQSAAGSQKE-GPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKC 354
Query: 186 -GFVKYSHRDMALAAINALNG 205
GFV Y + A AAI A+NG
Sbjct: 355 FGFVSYDNPVSAQAAIQAMNG 375
>UNIPROTKB|B4DIB6 [details] [associations]
symbol:CELF2 "cDNA FLJ51739, highly similar to Homo sapiens
CUG triplet repeat, RNA binding protein 2 (CUGBP2), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0006376 EMBL:AL157704 EMBL:AL136320
UniGene:Hs.309288 HGNC:HGNC:2550 ChiTaRS:CELF2 EMBL:AL136369
EMBL:AL138769 EMBL:AL162408 EMBL:AK295511 IPI:IPI01011300
SMR:B4DIB6 STRING:B4DIB6 Ensembl:ENST00000537122 UCSC:uc010qbo.1
Uniprot:B4DIB6
Length = 403
Score = 212 (79.7 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 43/104 (41%), Positives = 67/104 (64%)
Query: 125 PIQVRYADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSR 183
PIQ++ AD E+ AVE KLF+G ++K+ E ++ +FSP+G++E+ ++R SR
Sbjct: 4 PIQMKPADSEKSN--AVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 61
Query: 184 GCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
GC FV +S R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 62 GCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDK 105
Score = 159 (61.0 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G V K E DIR +F G + E +++ G +GC F+ ++T A AI+A
Sbjct: 22 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNAIKA 80
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
+H T+ G PI V++AD ++++
Sbjct: 81 MHQSQTMEGCSSPIVVKFADTQKDK 105
Score = 89 (36.4 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 126 IQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGC 185
+Q + A G ++ G LF+ L ++ ++++ ++F P+G V + D+ C
Sbjct: 302 LQQQSAAGSQKE-GPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKC 360
Query: 186 -GFVKYSHRDMALAAINALNG 205
GFV Y + A AAI A+NG
Sbjct: 361 FGFVSYDNPVSAQAAIQAMNG 381
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 209 (78.6 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 72/276 (26%), Positives = 128/276 (46%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A +++G++ + + + L + G ++ V L KD+ T QG F+++ + E+A+ A R
Sbjct: 13 ATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASR 72
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ N L G PI+V A ++++ + +LFVG+L+ TE+ + + FS +G + +
Sbjct: 73 IM-NGIRLYGK--PIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFGNLVN 129
Query: 172 V-YLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRPR 227
+ + RD+ S+G GFV ++ + + AAI +NG Y M ++ ++V++A D K R
Sbjct: 130 LPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLM---NKQVSVQYAYKKDGKGER 186
Query: 228 PGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITDQIPQNAWHPMS--PRNMG----PL 281
GD +P + PMS P + G P+
Sbjct: 187 HGDQAERMLAAQARKHNVQVPTQALPPQFTAPA-APAMPADMSRPMSTGPADQGMGRVPM 245
Query: 282 SNPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGL 317
P + GF + + L P P A P PGL
Sbjct: 246 LPPQLVGFSPNVATQQS-LARPGLPSVTAATPPPGL 280
>ZFIN|ZDB-GENE-070620-21 [details] [associations]
symbol:zgc:165603 "zgc:165603" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070620-21 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:CABZ01080723 EMBL:CABZ01080724 EMBL:CABZ01080725
EMBL:CABZ01080726 EMBL:CABZ01080727 EMBL:BC142894 IPI:IPI00851471
RefSeq:NP_001092221.1 UniGene:Dr.154402 SMR:A5PLG5
Ensembl:ENSDART00000105482 GeneID:571425 KEGG:dre:571425
eggNOG:KOG0146 HOGENOM:HOG000286011 HOVERGEN:HBG090495 OMA:DGHESSP
NextBio:20890554 Uniprot:A5PLG5
Length = 155
Score = 191 (72.3 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G +P+ E+D++PLFE+ G + E+ ++KD+ TG +GC F+ Y E A +A A
Sbjct: 83 KLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNA 142
Query: 113 LHNQHTLPG 121
LH Q TLPG
Sbjct: 143 LHEQKTLPG 151
Score = 125 (49.1 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 114 HNQHTLP-GGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
H + P G PI + G + A+ KLF+G + + EK+++ +F +G++ ++
Sbjct: 54 HISYPKPMNGSEPISIHPDSGTMKDQDAI--KLFIGQIPRNLEEKDLKPLFEQFGKIHEL 111
Query: 173 YLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRG 211
+++D +GC F+ Y R+ A+ A NAL+ T+ G
Sbjct: 112 TVLKDRYTGMHKGCAFLTYCARESAIKAQNALHEQKTLPG 151
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 207 (77.9 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 62/193 (32%), Positives = 95/193 (49%)
Query: 47 DGSSFAK--LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQ--------GCC 96
D S AK L + +P+ +E++R LF G V LI+DK G G
Sbjct: 49 DEPSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYG 108
Query: 97 FIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATE 156
F+ Y +A+RAI L N L I+V YA + G + L++ L K T+
Sbjct: 109 FVNYVNPSDAERAINTL-NGLRLQSKT--IKVSYARPSSD--GIKDANLYISGLPKTMTQ 163
Query: 157 KEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP 215
K VE++F+ YGR+ + ++ D+ SRG F+++ R A AI LNG G +P
Sbjct: 164 KNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPS-GASEP 222
Query: 216 LTVRFA-DPKRPR 227
+TV+FA +P + +
Sbjct: 223 ITVKFAANPNQSK 235
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 187 (70.9 bits), Expect = 8.9e-14, P = 8.9e-14
Identities = 44/153 (28%), Positives = 78/153 (50%)
Query: 44 DLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATS 103
D ++ KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT
Sbjct: 2 DSMEPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 61
Query: 104 EEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGA-VEYKLFVGSLNKQATEKEVEEI 162
EE D A+ A H + G V + + + +R GA + K+FVG++ + E + +
Sbjct: 62 EEVDAAMNA--RPHKVDGRVVEPKRAVSIEDSQRPGAYLNMKIFVGAIKEDTEEHHLRDY 119
Query: 163 FSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRD 194
F YG+ E + ++ D + RG FV + RD
Sbjct: 120 FGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRD 152
Score = 114 (45.2 bits), Expect = 0.00035, P = 0.00035
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINA 202
KLF+G L+ + T++ + F +G + D +MRD K+SRG GFV Y+ + AA+NA
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 70
Query: 203 LNGIYTMRGCDQPLTVRFADPKRP 226
R + V D +RP
Sbjct: 71 RPHKVDGRVVEPKRAVSIEDSQRP 94
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 210 (79.0 bits), Expect = 9.7e-14, P = 9.7e-14
Identities = 64/201 (31%), Positives = 107/201 (53%)
Query: 39 GGPSPDLV-DG---SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP P+ V G S ++FVG +P+ E+++ PLFE+ G + ++ L+ D TG +G
Sbjct: 144 GGPPPESVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 203
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGG--VGPIQVRYADGERERLGAVEYKLFVGSLNK 152
F+ + T E A A++ L+N H + G +G + + A+ +LFVGS+ K
Sbjct: 204 YAFVTFCTKEAAQEAVK-LYNNHEIRSGKHIG-VCISVANN----------RLFVGSIPK 251
Query: 153 QATEKEVEEIFSPYGR-VEDVYLMR--DELKQSRGCGFVKYS-HRDMALAAINALNGIYT 208
T++++ E FS + DV L D+ K++RG F++Y H+ A A ++G
Sbjct: 252 SKTKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVK 311
Query: 209 MRGCDQPLTVRFADP-KRPRP 228
+ G +TV +ADP + P P
Sbjct: 312 VWG--NVVTVEWADPIEDPDP 330
Score = 142 (55.0 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 53/179 (29%), Positives = 90/179 (50%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK+ +E I F + + +V L DKK + +G CF++Y + A +
Sbjct: 243 RLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 300
Query: 109 AIRALHNQHTLPGGVGPIQVRYADG----ERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164
A R L + G + V +AD + E + V+ LFV +L TE+ +E+ FS
Sbjct: 301 ARRRLMSGKVKVWG-NVVTVEWADPIEDPDPEVMAKVKV-LFVRNLANTVTEEILEKAFS 358
Query: 165 PYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+G++E V ++D F+ + RD A+ A+ +NG + G + + + FA P
Sbjct: 359 QFGKLERVKKLKDY-------AFIHFDERDGAVKAMEEMNG-KDLEG--ENIEIVFAKP 407
>RGD|1305683 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISO;ISS] [GO:0071346 "cellular response to
interferon-gamma" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 208 (78.3 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 65/201 (32%), Positives = 106/201 (52%)
Query: 39 GGPSPDLV-DG---SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP PD V G S ++FVG +P+ E+++ PLFE+ G + ++ L+ D TG +G
Sbjct: 55 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 114
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGG--VGPIQVRYADGERERLGAVEYKLFVGSLNK 152
F+ + T E A A++ L+N H + G +G + + A+ +LFVGS+ K
Sbjct: 115 YAFVTFCTKEAAQEAVK-LYNNHEIRSGKHIG-VCISVANN----------RLFVGSIPK 162
Query: 153 QATEKEVEEIFSPYGR-VEDVYLMR--DELKQSRGCGFVKYS-HRDMALAAINALNGIYT 208
T++++ E FS + DV L D+ K++RG F++Y H+ A A ++G
Sbjct: 163 SKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVK 222
Query: 209 MRGCDQPLTVRFADP-KRPRP 228
+ G TV +ADP + P P
Sbjct: 223 VWG--NVGTVEWADPIEDPDP 241
Score = 147 (56.8 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 53/178 (29%), Positives = 91/178 (51%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK+ +E I F + + +V L DKK + +G CF++Y + A +
Sbjct: 154 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 211
Query: 109 AIRALHNQHT-LPGGVGPIQVR--YADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSP 165
A R L + + G VG ++ D + E + V+ LFV +L TE+ +E+ FS
Sbjct: 212 ARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKV-LFVRNLANTVTEEILEKSFSQ 270
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+G++E V ++D F+ + RD A+ A+ +NG + G + + + FA P
Sbjct: 271 FGKLERVKKLKDY-------AFIHFDERDGAVKAMEEMNG-KDLEG--ENIEIVFAKP 318
>UNIPROTKB|Q7TP47 [details] [associations]
symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
ArrayExpress:Q7TP47 Genevestigator:Q7TP47
GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
Length = 533
Score = 208 (78.3 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 65/201 (32%), Positives = 106/201 (52%)
Query: 39 GGPSPDLV-DG---SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP PD V G S ++FVG +P+ E+++ PLFE+ G + ++ L+ D TG +G
Sbjct: 55 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 114
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGG--VGPIQVRYADGERERLGAVEYKLFVGSLNK 152
F+ + T E A A++ L+N H + G +G + + A+ +LFVGS+ K
Sbjct: 115 YAFVTFCTKEAAQEAVK-LYNNHEIRSGKHIG-VCISVANN----------RLFVGSIPK 162
Query: 153 QATEKEVEEIFSPYGR-VEDVYLMR--DELKQSRGCGFVKYS-HRDMALAAINALNGIYT 208
T++++ E FS + DV L D+ K++RG F++Y H+ A A ++G
Sbjct: 163 SKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVK 222
Query: 209 MRGCDQPLTVRFADP-KRPRP 228
+ G TV +ADP + P P
Sbjct: 223 VWG--NVGTVEWADPIEDPDP 241
Score = 147 (56.8 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 53/178 (29%), Positives = 91/178 (51%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK+ +E I F + + +V L DKK + +G CF++Y + A +
Sbjct: 154 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 211
Query: 109 AIRALHNQHT-LPGGVGPIQVR--YADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSP 165
A R L + + G VG ++ D + E + V+ LFV +L TE+ +E+ FS
Sbjct: 212 ARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKV-LFVRNLANTVTEEILEKSFSQ 270
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+G++E V ++D F+ + RD A+ A+ +NG + G + + + FA P
Sbjct: 271 FGKLERVKKLKDY-------AFIHFDERDGAVKAMEEMNG-KDLEG--ENIEIVFAKP 318
>UNIPROTKB|F6XIK8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
Length = 562
Score = 208 (78.3 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 65/201 (32%), Positives = 106/201 (52%)
Query: 39 GGPSPDLV-DG---SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP PD V G S ++FVG +P+ E+++ PLFE+ G + ++ L+ D TG +G
Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGG--VGPIQVRYADGERERLGAVEYKLFVGSLNK 152
F+ + T E A A++ L+N H + G +G + + A+ +LFVGS+ K
Sbjct: 205 YAFVTFCTKEAAQEAVK-LYNNHEIRSGKHIG-VCISVANN----------RLFVGSIPK 252
Query: 153 QATEKEVEEIFSPYGR-VEDVYLMR--DELKQSRGCGFVKYS-HRDMALAAINALNGIYT 208
T++++ E FS + DV L D+ K++RG F++Y H+ A A ++G
Sbjct: 253 SKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVK 312
Query: 209 MRGCDQPLTVRFADP-KRPRP 228
+ G TV +ADP + P P
Sbjct: 313 VWG--NVGTVEWADPIEDPDP 331
Score = 148 (57.2 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 53/178 (29%), Positives = 91/178 (51%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK+ +E I F + + +V L DKK + +G CF++Y + A +
Sbjct: 244 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 301
Query: 109 AIRALHNQHT-LPGGVGPIQVR--YADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSP 165
A R L + + G VG ++ D + E + V+ LFV +L TE+ +E+ FS
Sbjct: 302 ARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKV-LFVRNLANTVTEEILEKAFSQ 360
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+G++E V ++D F+ + RD A+ A+ +NG + G + + + FA P
Sbjct: 361 FGKLERVKKLKDY-------AFIHFDERDGAVKAMEEMNG-KDLEG--ENIEIVFAKP 408
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 203 (76.5 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 62/183 (33%), Positives = 97/183 (53%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG + EE + LF + G V+ V + KD+ T Q FI+Y + E+AD AI+
Sbjct: 25 ATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIK 84
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV-E 170
L N L G PI+V A +++ L V LF+G+L+ EK + + FS +G +
Sbjct: 85 VL-NMIKLHGK--PIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLLYDTFSAFGVIAS 140
Query: 171 DVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRP 226
+ +MRD + SRG GF+ Y + + AAI ++ G Y ++ +TV +A D K
Sbjct: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLS---NRQITVSYAYKKDTKGE 197
Query: 227 RPG 229
R G
Sbjct: 198 RHG 200
>UNIPROTKB|F1M3I9 [details] [associations]
symbol:Brunol4 "Protein Brunol4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00358672
Ensembl:ENSRNOT00000019548 ArrayExpress:F1M3I9 Uniprot:F1M3I9
Length = 306
Score = 195 (73.7 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 40/84 (47%), Positives = 52/84 (61%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203
KLFVG LNKQ +E +V +F +G +E+ ++R S+GC FVKYS A AAINAL
Sbjct: 2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 61
Query: 204 NGIYTMRGCDQPLTVRFADPKRPR 227
+G TM G L V+FAD + R
Sbjct: 62 HGSQTMPGASSSLVVKFADTDKER 85
Score = 190 (71.9 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R LFE GN+ E +++ G +GC F+KY++ EA AI A
Sbjct: 2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINA 60
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
LH T+PG + V++AD ++ER
Sbjct: 61 LHGSQTMPGASSSLVVKFADTDKER 85
Score = 48 (22.0 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 166 YGRVEDVYLMRDEL-KQSRGCGFVKYSHRDMALAAINALNG 205
YG++ + + Q + GFV + + A AI A+NG
Sbjct: 244 YGQISQAFPQPPPMIPQQQREGFVSFDNPASAQTAIQAMNG 284
Score = 39 (18.8 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 663 GYTQLPPVAAGSVNNPTRFQQGL 685
G+T LPP A G F G+
Sbjct: 189 GFTGLPPQANGQPAAEAVFANGI 211
>UNIPROTKB|E2QVD3 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 ProteinModelPortal:E2QVD3
Ensembl:ENSCAFT00000004869 Uniprot:E2QVD3
Length = 622
Score = 208 (78.3 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 65/201 (32%), Positives = 106/201 (52%)
Query: 39 GGPSPDLV-DG---SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP PD V G S ++FVG +P+ E+++ PLFE+ G + ++ L+ D TG +G
Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGG--VGPIQVRYADGERERLGAVEYKLFVGSLNK 152
F+ + T E A A++ L+N H + G +G + + A+ +LFVGS+ K
Sbjct: 205 YAFVTFCTKEAAQEAVK-LYNNHEIRSGKHIG-VCISVANN----------RLFVGSIPK 252
Query: 153 QATEKEVEEIFSPYGR-VEDVYLMR--DELKQSRGCGFVKYS-HRDMALAAINALNGIYT 208
T++++ E FS + DV L D+ K++RG F++Y H+ A A ++G
Sbjct: 253 SKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVK 312
Query: 209 MRGCDQPLTVRFADP-KRPRP 228
+ G TV +ADP + P P
Sbjct: 313 VWG--NVGTVEWADPIEDPDP 331
Score = 132 (51.5 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 47/155 (30%), Positives = 79/155 (50%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK+ +E I F + + +V L DKK + +G CF++Y + A +
Sbjct: 244 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 301
Query: 109 AIRALHNQHT-LPGGVGPIQVR--YADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSP 165
A R L + + G VG ++ D + E + V+ LFV +L TE+ +E+ FS
Sbjct: 302 ARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKV-LFVRNLANTVTEEILEKAFSQ 360
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAI 200
+G++E V ++D F+ + RD A+ I
Sbjct: 361 FGKLERVKKLKDY-------AFIHFDERDGAVKVI 388
>UNIPROTKB|O60506 [details] [associations]
symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0017148 "negative regulation of translation"
evidence=IDA;IMP] [GO:0071346 "cellular response to
interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
Length = 623
Score = 208 (78.3 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 65/201 (32%), Positives = 106/201 (52%)
Query: 39 GGPSPDLV-DG---SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP PD V G S ++FVG +P+ E+++ PLFE+ G + ++ L+ D TG +G
Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGG--VGPIQVRYADGERERLGAVEYKLFVGSLNK 152
F+ + T E A A++ L+N H + G +G + + A+ +LFVGS+ K
Sbjct: 205 YAFVTFCTKEAAQEAVK-LYNNHEIRSGKHIG-VCISVANN----------RLFVGSIPK 252
Query: 153 QATEKEVEEIFSPYGR-VEDVYLMR--DELKQSRGCGFVKYS-HRDMALAAINALNGIYT 208
T++++ E FS + DV L D+ K++RG F++Y H+ A A ++G
Sbjct: 253 SKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVK 312
Query: 209 MRGCDQPLTVRFADP-KRPRP 228
+ G TV +ADP + P P
Sbjct: 313 VWG--NVGTVEWADPIEDPDP 331
Score = 148 (57.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 53/178 (29%), Positives = 91/178 (51%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK+ +E I F + + +V L DKK + +G CF++Y + A +
Sbjct: 244 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 301
Query: 109 AIRALHNQHT-LPGGVGPIQVR--YADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSP 165
A R L + + G VG ++ D + E + V+ LFV +L TE+ +E+ FS
Sbjct: 302 ARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKV-LFVRNLANTVTEEILEKAFSQ 360
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+G++E V ++D F+ + RD A+ A+ +NG + G + + + FA P
Sbjct: 361 FGKLERVKKLKDY-------AFIHFDERDGAVKAMEEMNG-KDLEG--ENIEIVFAKP 408
>MGI|MGI:1891690 [details] [associations]
symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
interacting protein" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IDA] [GO:0071346
"cellular response to interferon-gamma" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891690 GO:GO:0008380 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0071013 GO:GO:0008143
GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 CTD:10492 KO:K13160
OMA:GNMATEH OrthoDB:EOG4FN4HM EMBL:AF093821 EMBL:AB035725
EMBL:AK034845 EMBL:AK077588 EMBL:AK078158 EMBL:BC004001
EMBL:BC041148 EMBL:BC050079 EMBL:BC055863 EMBL:BC058807
EMBL:BC080309 EMBL:BC108363 EMBL:AF408434 IPI:IPI00406117
IPI:IPI00406118 RefSeq:NP_062640.2 RefSeq:NP_062770.1
UniGene:Mm.260545 ProteinModelPortal:Q7TMK9 SMR:Q7TMK9
STRING:Q7TMK9 PhosphoSite:Q7TMK9 REPRODUCTION-2DPAGE:IPI00406117
PaxDb:Q7TMK9 PRIDE:Q7TMK9 Ensembl:ENSMUST00000069221
Ensembl:ENSMUST00000173801 Ensembl:ENSMUST00000174282 GeneID:56403
KEGG:mmu:56403 UCSC:uc009qyo.1 UCSC:uc009qyq.1 InParanoid:Q7TMK9
NextBio:312520 Bgee:Q7TMK9 Genevestigator:Q7TMK9
GermOnline:ENSMUSG00000032423 Uniprot:Q7TMK9
Length = 623
Score = 208 (78.3 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 65/201 (32%), Positives = 106/201 (52%)
Query: 39 GGPSPDLV-DG---SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP PD V G S ++FVG +P+ E+++ PLFE+ G + ++ L+ D TG +G
Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGG--VGPIQVRYADGERERLGAVEYKLFVGSLNK 152
F+ + T E A A++ L+N H + G +G + + A+ +LFVGS+ K
Sbjct: 205 YAFVTFCTKEAAQEAVK-LYNNHEIRSGKHIG-VCISVANN----------RLFVGSIPK 252
Query: 153 QATEKEVEEIFSPYGR-VEDVYLMR--DELKQSRGCGFVKYS-HRDMALAAINALNGIYT 208
T++++ E FS + DV L D+ K++RG F++Y H+ A A ++G
Sbjct: 253 SKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVK 312
Query: 209 MRGCDQPLTVRFADP-KRPRP 228
+ G TV +ADP + P P
Sbjct: 313 VWG--NVGTVEWADPIEDPDP 331
Score = 147 (56.8 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 53/178 (29%), Positives = 91/178 (51%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK+ +E I F + + +V L DKK + +G CF++Y + A +
Sbjct: 244 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 301
Query: 109 AIRALHNQHT-LPGGVGPIQVR--YADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSP 165
A R L + + G VG ++ D + E + V+ LFV +L TE+ +E+ FS
Sbjct: 302 ARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKV-LFVRNLANTVTEEILEKSFSQ 360
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+G++E V ++D F+ + RD A+ A+ +NG + G + + + FA P
Sbjct: 361 FGKLERVKKLKDY-------AFIHFDERDGAVKAMEEMNG-KDLEG--ENIEIVFAKP 408
>UNIPROTKB|F2Z5D4 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
Length = 627
Score = 208 (78.3 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 65/201 (32%), Positives = 106/201 (52%)
Query: 39 GGPSPDLV-DG---SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP PD V G S ++FVG +P+ E+++ PLFE+ G + ++ L+ D TG +G
Sbjct: 149 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 208
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGG--VGPIQVRYADGERERLGAVEYKLFVGSLNK 152
F+ + T E A A++ L+N H + G +G + + A+ +LFVGS+ K
Sbjct: 209 YAFVTFCTKEAAQEAVK-LYNNHEIRSGKHIG-VCISVANN----------RLFVGSIPK 256
Query: 153 QATEKEVEEIFSPYGR-VEDVYLMR--DELKQSRGCGFVKYS-HRDMALAAINALNGIYT 208
T++++ E FS + DV L D+ K++RG F++Y H+ A A ++G
Sbjct: 257 SKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVK 316
Query: 209 MRGCDQPLTVRFADP-KRPRP 228
+ G TV +ADP + P P
Sbjct: 317 VWG--NVGTVEWADPIEDPDP 335
Score = 148 (57.2 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 53/178 (29%), Positives = 91/178 (51%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK+ +E I F + + +V L DKK + +G CF++Y + A +
Sbjct: 248 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 305
Query: 109 AIRALHNQHT-LPGGVGPIQVR--YADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSP 165
A R L + + G VG ++ D + E + V+ LFV +L TE+ +E+ FS
Sbjct: 306 ARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKV-LFVRNLANTVTEEILEKAFSQ 364
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+G++E V ++D F+ + RD A+ A+ +NG + G + + + FA P
Sbjct: 365 FGKLERVKKLKDY-------AFIHFDERDGAVKAMEEMNG-KDLEG--ENIEIVFAKP 412
>UNIPROTKB|F1MCT8 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
Length = 638
Score = 208 (78.3 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 65/201 (32%), Positives = 106/201 (52%)
Query: 39 GGPSPDLV-DG---SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP PD V G S ++FVG +P+ E+++ PLFE+ G + ++ L+ D TG +G
Sbjct: 160 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 219
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGG--VGPIQVRYADGERERLGAVEYKLFVGSLNK 152
F+ + T E A A++ L+N H + G +G + + A+ +LFVGS+ K
Sbjct: 220 YAFVTFCTKEAAQEAVK-LYNNHEIRSGKHIG-VCISVANN----------RLFVGSIPK 267
Query: 153 QATEKEVEEIFSPYGR-VEDVYLMR--DELKQSRGCGFVKYS-HRDMALAAINALNGIYT 208
T++++ E FS + DV L D+ K++RG F++Y H+ A A ++G
Sbjct: 268 SKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVK 327
Query: 209 MRGCDQPLTVRFADP-KRPRP 228
+ G TV +ADP + P P
Sbjct: 328 VWG--NVGTVEWADPIEDPDP 346
Score = 148 (57.2 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 53/178 (29%), Positives = 91/178 (51%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK+ +E I F + + +V L DKK + +G CF++Y + A +
Sbjct: 259 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 316
Query: 109 AIRALHNQHT-LPGGVGPIQVR--YADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSP 165
A R L + + G VG ++ D + E + V+ LFV +L TE+ +E+ FS
Sbjct: 317 ARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKV-LFVRNLANTVTEEILEKAFSQ 375
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+G++E V ++D F+ + RD A+ A+ +NG + G + + + FA P
Sbjct: 376 FGKLERVKKLKDY-------AFIHFDERDGAVKAMEEMNG-KDLEG--ENIEIVFAKP 423
>UNIPROTKB|E9PSH0 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 EMBL:AC090559
HGNC:HGNC:2549 ChiTaRS:CELF1 GO:GO:0006376 IPI:IPI00984001
ProteinModelPortal:E9PSH0 SMR:E9PSH0 Ensembl:ENST00000530151
ArrayExpress:E9PSH0 Bgee:E9PSH0 Uniprot:E9PSH0
Length = 95
Score = 184 (69.8 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 38/89 (42%), Positives = 56/89 (62%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKY 100
PD D + K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ +
Sbjct: 8 PDQPDLDAI-KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 66
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVR 129
T + A A ALHN LPG PIQ++
Sbjct: 67 YTRKAALEAQNALHNMKVLPGMHHPIQMK 95
Score = 134 (52.2 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRGCDQPLTVR 219
NAL+ + + G P+ ++
Sbjct: 77 NALHNMKVLPGMHHPIQMK 95
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 184 (69.8 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 50/189 (26%), Positives = 91/189 (48%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC--FI 98
P P L + L + +P+ E ++ LF + G + + +I+ ++TG CC F+
Sbjct: 30 PPPPLPNLRMKTNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGIS--CCYGFV 87
Query: 99 KYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKE 158
Y + +A A+ + T G +++ A + L+VG+L EK+
Sbjct: 88 DYVSERQAAAAVNGMDGYETR----GK-RLKVAFARPSEYESTSSSLYVGNLPTYMDEKK 142
Query: 159 VEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSH-RDMALAAINALNGIYTMRGCDQPL 216
V E+F+ YG + DV L+R + +SRG F+++ RD +A Y + G +PL
Sbjct: 143 VRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVAKYGMDR--YMIEGASRPL 200
Query: 217 TVRFADPKR 225
TV+F + ++
Sbjct: 201 TVKFVEREK 209
Score = 123 (48.4 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 25/92 (27%), Positives = 55/92 (59%)
Query: 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADR 108
S+ + L+VG++P E+ +R LF +GN+++V L++ K + +G F+++ +A+
Sbjct: 124 STSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEV 183
Query: 109 AIRALHNQHTLPGGVGPIQVRYADGERERLGA 140
A + +++ + G P+ V++ ERE+ G+
Sbjct: 184 AKYGM-DRYMIEGASRPLTVKFV--EREKKGS 212
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 195 (73.7 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 57/190 (30%), Positives = 100/190 (52%)
Query: 45 LVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSE 104
+V+ + A ++VG + + E + L + G V+ V + KD+ T QG F+++ E
Sbjct: 6 IVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEE 65
Query: 105 EADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164
+AD AI+ L N L G PI+V A + + V +FVG+L+ + EK + + FS
Sbjct: 66 DADYAIKIL-NMIKLYGK--PIKVNKASAHEKNMD-VGANIFVGNLDPEVDEKLLYDTFS 121
Query: 165 PYGRVEDV-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA- 221
+G + V +MRD + S+G F+ ++ + + A+ A+NG + C++ +TV +A
Sbjct: 122 AFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFL---CNRAITVSYAF 178
Query: 222 --DPKRPRPG 229
D K R G
Sbjct: 179 KRDSKGERHG 188
Score = 49 (22.3 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 20/53 (37%), Positives = 22/53 (41%)
Query: 270 WHPMSP----RNMGPLSNPGIRGFGNQLPP-RSGDLGMPLNPGGPADVPLPGL 317
W P P R GP PG+ G PP R G GM GG P PG+
Sbjct: 296 WPPPPPPPPGRTPGP---PGMPGMPPPPPPSRFGPPGM----GGMPPPPPPGM 341
Score = 43 (20.2 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 266 PQNAWHPMSPRNMGPLSNPGIR---GFGNQLPPRSGDLGMPLNPGGPADVP 313
P + + P M P PG+R G PPR G + P P P
Sbjct: 321 PPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRP 371
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 195 (73.7 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 57/190 (30%), Positives = 100/190 (52%)
Query: 45 LVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSE 104
+V+ + A ++VG + + E + L + G V+ V + KD+ T QG F+++ E
Sbjct: 6 IVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEE 65
Query: 105 EADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164
+AD AI+ L N L G PI+V A + + V +FVG+L+ + EK + + FS
Sbjct: 66 DADYAIKIL-NMIKLYGK--PIKVNKASAHEKNMD-VGANIFVGNLDPEVDEKLLYDTFS 121
Query: 165 PYGRVEDV-YLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA- 221
+G + V +MRD + S+G F+ ++ + + A+ A+NG + C++ +TV +A
Sbjct: 122 AFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFL---CNRAITVSYAF 178
Query: 222 --DPKRPRPG 229
D K R G
Sbjct: 179 KRDSKGERHG 188
Score = 49 (22.3 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 20/53 (37%), Positives = 22/53 (41%)
Query: 270 WHPMSP----RNMGPLSNPGIRGFGNQLPP-RSGDLGMPLNPGGPADVPLPGL 317
W P P R GP PG+ G PP R G GM GG P PG+
Sbjct: 296 WPPPPPPPPGRTPGP---PGMPGMPPPPPPSRFGPPGM----GGMPPPPPPGM 341
Score = 43 (20.2 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 266 PQNAWHPMSPRNMGPLSNPGIR---GFGNQLPPRSGDLGMPLNPGGPADVP 313
P + + P M P PG+R G PPR G + P P P
Sbjct: 321 PPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRP 371
>GENEDB_PFALCIPARUM|MAL8P1.40 [details] [associations]
symbol:MAL8P1.40 "RNA-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051
RefSeq:XP_001349292.1 ProteinModelPortal:Q8IB66 IntAct:Q8IB66
MINT:MINT-1560303 EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381
KEGG:pfa:MAL8P1.40 EuPathDB:PlasmoDB:PF3D7_0823200
HOGENOM:HOG000282627 OMA:QHFQHFG ProtClustDB:CLSZ2431748
Uniprot:Q8IB66
Length = 286
Score = 129 (50.5 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 30/87 (34%), Positives = 43/87 (49%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203
K+F+GS+ K TE+E++ + YG + VY + + RG F+ Y R A AI AL
Sbjct: 8 KIFIGSIPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIEAL 67
Query: 204 NGIYTMRGCDQPLTVRFADPKRPRPGD 230
+ +PL VRFA K D
Sbjct: 68 DYKCIFPNSQRPLDVRFASYKYNNSND 94
Score = 118 (46.6 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ-QGCCFIKYATSEEADRAI 110
+K+F+GS+PK EE+++ ++G + +V + T Q +G FI Y EA +AI
Sbjct: 7 SKIFIGSIPKDVTEEELKTEAAKYGTITQVYYVP--ATAQSPRGWAFITYEQRSEAYKAI 64
Query: 111 RALHNQHTLPGGVGPIQVRYA 131
AL + P P+ VR+A
Sbjct: 65 EALDYKCIFPNSQRPLDVRFA 85
Score = 116 (45.9 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELT 590
K+ W +H + DG+ YYYN VTG S+WEKP+E++
Sbjct: 100 KNVWQKHVTTDGHPYYYNSVTGHSQWEKPKEMS 132
Score = 93 (37.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 133 GERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH 192
G G +FV L T+ E+ + F +G V + RD +++G GFV +++
Sbjct: 140 GSAPSFGPPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNN 199
Query: 193 RDMALAAINALNGIY 207
+ AL AI ++G Y
Sbjct: 200 PESALNAIKGMHGFY 214
>UNIPROTKB|Q8IB66 [details] [associations]
symbol:MAL8P1.40 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051 RefSeq:XP_001349292.1
ProteinModelPortal:Q8IB66 IntAct:Q8IB66 MINT:MINT-1560303
EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381 KEGG:pfa:MAL8P1.40
EuPathDB:PlasmoDB:PF3D7_0823200 HOGENOM:HOG000282627 OMA:QHFQHFG
ProtClustDB:CLSZ2431748 Uniprot:Q8IB66
Length = 286
Score = 129 (50.5 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 30/87 (34%), Positives = 43/87 (49%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINAL 203
K+F+GS+ K TE+E++ + YG + VY + + RG F+ Y R A AI AL
Sbjct: 8 KIFIGSIPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIEAL 67
Query: 204 NGIYTMRGCDQPLTVRFADPKRPRPGD 230
+ +PL VRFA K D
Sbjct: 68 DYKCIFPNSQRPLDVRFASYKYNNSND 94
Score = 118 (46.6 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQ-QGCCFIKYATSEEADRAI 110
+K+F+GS+PK EE+++ ++G + +V + T Q +G FI Y EA +AI
Sbjct: 7 SKIFIGSIPKDVTEEELKTEAAKYGTITQVYYVP--ATAQSPRGWAFITYEQRSEAYKAI 64
Query: 111 RALHNQHTLPGGVGPIQVRYA 131
AL + P P+ VR+A
Sbjct: 65 EALDYKCIFPNSQRPLDVRFA 85
Score = 116 (45.9 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 558 KSSWTEHTSPDGYKYYYNCVTGVSKWEKPEELT 590
K+ W +H + DG+ YYYN VTG S+WEKP+E++
Sbjct: 100 KNVWQKHVTTDGHPYYYNSVTGHSQWEKPKEMS 132
Score = 93 (37.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 133 GERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH 192
G G +FV L T+ E+ + F +G V + RD +++G GFV +++
Sbjct: 140 GSAPSFGPPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNN 199
Query: 193 RDMALAAINALNGIY 207
+ AL AI ++G Y
Sbjct: 200 PESALNAIKGMHGFY 214
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 200 (75.5 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 61/199 (30%), Positives = 101/199 (50%)
Query: 39 GGPSPDLV-DGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP PD V G ++FVG +P+ E+++ PLFE+ G + ++ L+ D +GQ +G
Sbjct: 117 GGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRG 176
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
FI + E A A++ + PG + + A+ +LFVGS+ K
Sbjct: 177 YAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANN----------RLFVGSIPKNK 226
Query: 155 TEKEVEEIFSPY--GRVEDV-YLMRDELKQSRGCGFVKYS-HRDMALAAINALNGIYTMR 210
T++ + E FS G V+ + Y D+ K++RG F++Y H+ A A ++G +
Sbjct: 227 TKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVW 286
Query: 211 GCDQPLTVRFADP-KRPRP 228
G +TV +ADP + P P
Sbjct: 287 G--NVVTVEWADPVEEPDP 303
Score = 143 (55.4 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 50/160 (31%), Positives = 81/160 (50%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK +E+I F + +++V L DKK + +G CF++Y + A +
Sbjct: 216 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 273
Query: 109 AIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK---LFVGSLNKQATEKEVEEIFSP 165
A R L + G + V +AD E V K LFV +L TE+ +E+ FS
Sbjct: 274 ARRRLMSGKVKVWG-NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 332
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205
+G++E V ++D FV + R A+ A++ +NG
Sbjct: 333 FGKLERVKKLKDY-------AFVHFEDRGAAVKAMDEMNG 365
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 181 (68.8 bits), Expect = 4.0e-13, P = 4.0e-13
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 93
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 94 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 151
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 152 VIEIMTDRGSGKKRGFAFVTFDDHD 176
Score = 111 (44.1 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINA 202
KLF+G L+ + T++ + F +G + D +MRD K+SRG GFV Y+ + AA+NA
Sbjct: 34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 93
Query: 203 LNGIYTMRGCDQPLTVRFADPKRP 226
R + V D +RP
Sbjct: 94 RPHKVDGRVVEPKRAVSREDSQRP 117
Score = 39 (18.8 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 82 ALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
+L+ K G Q C F+ A S + +R L
Sbjct: 4 SLLVAKFLGTQDLCLFLNLALSPKEPEQLRKL 35
>UNIPROTKB|F1P311 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02033464 IPI:IPI01017320
Ensembl:ENSGALT00000038509 ArrayExpress:F1P311 Uniprot:F1P311
Length = 328
Score = 197 (74.4 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 39/98 (39%), Positives = 62/98 (63%)
Query: 131 ADGERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVK 189
AD E+ AVE KLF+G ++K+ E ++ +FSP+G++E+ ++R SRGC FV
Sbjct: 2 ADSEKNN--AVEDRKLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVT 59
Query: 190 YSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
++ R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 60 FTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKDK 97
Score = 155 (59.6 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + K E DIR +F G + E +++ G +GC F+ + T A AI+A
Sbjct: 14 KLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKA 72
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
+H T+ G PI V++AD ++++
Sbjct: 73 MHQAQTMEGCSSPIVVKFADTQKDK 97
>UNIPROTKB|F1P022 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02039408 EMBL:AADN02039409
EMBL:AADN02039410 EMBL:AADN02039411 EMBL:AADN02039412
EMBL:AADN02039413 EMBL:AADN02039414 EMBL:AADN02039415
EMBL:AADN02039416 EMBL:AADN02039417 EMBL:AADN02039418
EMBL:AADN02039419 EMBL:AADN02039420 EMBL:AADN02039421
EMBL:AADN02039422 EMBL:AADN02039423 EMBL:AADN02039424
EMBL:AADN02039425 EMBL:AADN02039426 EMBL:AADN02039427
EMBL:AADN02039428 EMBL:AADN02039429 EMBL:AADN02039430
EMBL:AADN02039431 EMBL:AADN02039432 EMBL:AADN02039433
IPI:IPI00574286 Ensembl:ENSGALT00000040033 ArrayExpress:F1P022
Uniprot:F1P022
Length = 325
Score = 196 (74.1 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 38/95 (40%), Positives = 61/95 (64%)
Query: 134 ERERLGAVE-YKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSH 192
+ E+ AVE KLF+G ++K+ E ++ +FSP+G++E+ ++R SRGC FV +S
Sbjct: 3 DSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFST 62
Query: 193 RDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
R MA AI A++ TM GC P+ V+FAD ++ +
Sbjct: 63 RAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDK 97
Score = 159 (61.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G V K E DIR +F G + E +++ G +GC F+ ++T A AI+A
Sbjct: 14 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNAIKA 72
Query: 113 LHNQHTLPGGVGPIQVRYADGERER 137
+H T+ G PI V++AD ++++
Sbjct: 73 MHQSQTMEGCSSPIVVKFADTQKDK 97
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 201 (75.8 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 61/205 (29%), Positives = 101/205 (49%)
Query: 34 GFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT---- 89
G +G G + + L V +P+T E++IR LF G + V LI+DK
Sbjct: 131 GNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYID 190
Query: 90 ---------GQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERL-G 139
GQ G F+ Y ++A++A+ L N L I+V +A + + G
Sbjct: 191 PLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVL-NGLRLQNKT--IKVSFARPSSDAIKG 247
Query: 140 AVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK--QSRGCGFVKYSHRDMAL 197
A L+V L K T++E+E IF+P+G + ++++ Q++G GF+++ R+ A
Sbjct: 248 A---NLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEAT 304
Query: 198 AAINALNGIYTMRGCDQPLTVRFAD 222
AI ALNG T C P+ V+F++
Sbjct: 305 RAIIALNGT-TPSSCTDPIVVKFSN 328
Score = 121 (47.7 bits), Expect = 0.00037, P = 0.00037
Identities = 37/107 (34%), Positives = 55/107 (51%)
Query: 119 LPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDE 178
LP G+G GA Y +F+ +L + E + ++F P+G V+ V +++D
Sbjct: 380 LPNGLGAAAAAATTLASGPGGA--YPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDP 437
Query: 179 L-KQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
Q +G GFV ++ D A AI ALNG YTM G ++ L V F K
Sbjct: 438 TTNQCKGYGFVSMTNYDEAAMAIRALNG-YTM-G-NRVLQVSFKTNK 481
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 200 (75.5 bits), Expect = 7.8e-13, P = 7.8e-13
Identities = 54/177 (30%), Positives = 95/177 (53%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
+++F+G +P+ EED+R L EE G + EV L+KD+ +G +G F+ + T + A +AI
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
LH++ G +R + L + +LF+G++ K TE E ++ G VE
Sbjct: 176 ELHSKE-FKGKT----IRCS------LSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVE 224
Query: 171 DVYLMRDELK--QSRGCGFVKYSHRDMA-LAAINALNGIYTMRGCDQPLTVRFADPK 224
++ L++D ++RG FV Y + A + ++ + + G + P TV +ADPK
Sbjct: 225 NIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEG-NAP-TVTWADPK 279
Score = 162 (62.1 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 52/184 (28%), Positives = 91/184 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIE-VALIKDK-KTGQQQGCCFIKYATSEEADRAI 110
+LF+G++PK E++ R + E+ G +E + LIKD T + +G F+ Y + AD +
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 111 RALHNQHTLPGGVGPIQVRYADGE---RERLGAVEYK-LFVGSLNKQATEKEVEEIFSPY 166
+ + + + G P V +AD + A + K L+V ++ + + ++++E+F +
Sbjct: 257 QKMIDSNFKLEGNAPT-VTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRH 315
Query: 167 GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
G V + + R GFV Y+ R AL A+ Y + G QPL V A P+
Sbjct: 316 GEVTKIVTPPGK-GGKRDFGFVHYAERSSALKAVKDTER-YEVNG--QPLEVVLAKPQAE 371
Query: 227 RPGD 230
R D
Sbjct: 372 RKHD 375
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 168 (64.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 51/154 (33%), Positives = 82/154 (53%)
Query: 71 LFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRY 130
LFE+ ++ +I K Q G F+ Y ++A++AI L+ L I+V Y
Sbjct: 99 LFEKW-RPLDSEVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSY 154
Query: 131 ADGERERLGAV-EYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQ-SRGCGFV 188
A R ++ + L+V L K T+KE+E++FS YGR+ ++ D++ SRG GF+
Sbjct: 155 A---RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFI 211
Query: 189 KYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
++ R A AI LNG G +P+TV+FA+
Sbjct: 212 RFDKRIEAEEAIKGLNG-QKPPGATEPITVKFAN 244
Score = 143 (55.4 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L+V +PKT ++++ LF ++G +I ++ D+ TG +G FI++ EA+ AI+
Sbjct: 165 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 224
Query: 112 ALHNQHTLPGGVGPIQVRYADGERER 137
L+ Q PG PI V++A+ ++
Sbjct: 225 GLNGQKP-PGATEPITVKFANNPSQK 249
Score = 101 (40.6 bits), Expect = 9.3e-13, Sum P(2) = 9.3e-13
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L A E + ++F P+G V +V ++RD + +G GFV ++ D A AI +L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 379 NG-YRL-G-DRVLQVSFKTNK 396
Score = 69 (29.3 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S L V +P+ +E+++ LF G + L++DK TG Q F +Y T
Sbjct: 47 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQ----FREYFTDSSLFEK 102
Query: 110 IRALHNQ 116
R L ++
Sbjct: 103 WRPLDSE 109
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 177 (67.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG+ E
Sbjct: 68 --RPHKVNGRVVEPKRAVSREDSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTE 125
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ ++ D + RG FV + RD
Sbjct: 126 VIEIVTDRGSGKKRGFAFVTFDDRD 150
Score = 112 (44.5 bits), Expect = 0.00095, P = 0.00095
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINA 202
KLF+G L+ + T++ + F +G + D +MRD K+SRG GFV Y+ + AA+NA
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 203 LNGIYTMRGCDQPLTVRFADPKRP 226
R + V D +RP
Sbjct: 68 RPHKVNGRVVEPKRAVSREDSQRP 91
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 200 (75.5 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 61/199 (30%), Positives = 101/199 (50%)
Query: 39 GGPSPDLV-DGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP PD V G ++FVG +P+ E+++ PLFE+ G + ++ L+ D +GQ +G
Sbjct: 148 GGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRG 207
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
FI + E A A++ + PG + + A+ +LFVGS+ K
Sbjct: 208 YAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANN----------RLFVGSIPKNK 257
Query: 155 TEKEVEEIFSPY--GRVEDV-YLMRDELKQSRGCGFVKYS-HRDMALAAINALNGIYTMR 210
T++ + E FS G V+ + Y D+ K++RG F++Y H+ A A ++G +
Sbjct: 258 TKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVW 317
Query: 211 GCDQPLTVRFADP-KRPRP 228
G +TV +ADP + P P
Sbjct: 318 G--NVVTVEWADPVEEPDP 334
Score = 143 (55.4 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 50/160 (31%), Positives = 81/160 (50%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK +E+I F + +++V L DKK + +G CF++Y + A +
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 304
Query: 109 AIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK---LFVGSLNKQATEKEVEEIFSP 165
A R L + G + V +AD E V K LFV +L TE+ +E+ FS
Sbjct: 305 ARRRLMSGKVKVWG-NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205
+G++E V ++D FV + R A+ A++ +NG
Sbjct: 364 FGKLERVKKLKDY-------AFVHFEDRGAAVKAMDEMNG 396
>FB|FBgn0264001 [details] [associations]
symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISA]
[GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
OMA:HALNGEY Uniprot:Q9VU91
Length = 422
Score = 191 (72.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 40/102 (39%), Positives = 63/102 (61%)
Query: 126 IQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGC 185
+Q++ A+ E R ++ KLFVG L+KQ TE +V +IF P+G +E+ ++R S+GC
Sbjct: 39 LQLKPAENE-SRSEHLDRKLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDGASKGC 97
Query: 186 GFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPR 227
FVK+ + A +AI L+G TM G L V++AD ++ R
Sbjct: 98 AFVKFGSQQEAQSAITNLHGSQTMPGASSSLVVKYADTEKER 139
Score = 184 (69.8 bits), Expect = 7.9e-12, Sum P(2) = 7.9e-12
Identities = 41/115 (35%), Positives = 60/115 (52%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K E+D+R +F G + E +++ G +GC F+K+ + +EA AI
Sbjct: 56 KLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPD-GASKGCAFVKFGSQQEAQSAITN 114
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG 167
LH T+PG + V+YAD E+ER + G +N V FSPYG
Sbjct: 115 LHGSQTMPGASSSLVVKYADTEKERQ-IRRMQQMAGHMN--LLNPFVFNQFSPYG 166
Score = 48 (22.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 382 QIP-GQTSFSQ--ALPSQHL--LGMSGNLPASQPQGQQIASSSTALPTPL--NIKPQSSS 434
QIP G Q +LPS + M N P QP G A+++ A + N PQ++
Sbjct: 201 QIPHGLNGTGQPPSLPSPTMPNFNMGANTPNGQPGGAAAAAAAAAAADGVFTNGIPQTA- 259
Query: 435 LPG 437
PG
Sbjct: 260 FPG 262
Score = 42 (19.8 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 388 SFSQALPSQHLLGMSGNLPASQPQGQQ-IASSSTALPTPLNIKPQSSSLPGGT 439
+++Q L+ + P S +A+ +T +P LN Q SLP T
Sbjct: 167 AYAQQQQQAALMAAAATAPGSAAAYMNPMAALATQIPHGLNGTGQPPSLPSPT 219
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 196 (74.1 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 51/178 (28%), Positives = 86/178 (48%)
Query: 50 SFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRA 109
S K+FVG + + + F ++G + + ++KD+KTGQ +G F+ YA S D+
Sbjct: 40 SAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKV 99
Query: 110 IRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRV 169
I+ + H + G I+ G K+FVG + + E +E F +G +
Sbjct: 100 IQ---DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGEL 156
Query: 170 EDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRP 226
++ +MRD +SRG GFV Y DM + N I + G + ++ A+PK+P
Sbjct: 157 KEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRI-ELSGTQ--VEIKKAEPKKP 211
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 197 (74.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 49/178 (27%), Positives = 96/178 (53%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
G K F+G + EE + F+++GN+++ ++KD TG+ +G F+ + ++ D
Sbjct: 158 GGPSRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVD 217
Query: 108 RAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG 167
++ ++H L G + + + ++E++G K+FVG ++ TE+E + FS +G
Sbjct: 218 ALLK---DRHVLDGKLIDPKRAISKEDQEKVG----KIFVGGIDPMVTEEEFDNFFSQFG 270
Query: 168 RVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
++ D LM D + +SRG GFV Y A+ + +N T++G + + V+ A P+
Sbjct: 271 KIIDCQLMIDKDTGRSRGFGFVTYDS-PAAVDKV-CVNKYLTLKG--KAMEVKRAAPR 324
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 192 (72.6 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 59/187 (31%), Positives = 101/187 (54%)
Query: 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVA-LIKDKKTGQQQGCCFIKYATSEEAD 107
S AKLFVG++ + + LFE+ G V E+A +I +++T Q +G F+ ++ +EA+
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTV-EIAEVIYNRETDQSRGFGFVTMSSVDEAE 205
Query: 108 RAIRALHNQHTLPGGVGPIQVRYADGER-ERLGAV---EYKLFVGSLNKQATEKEVEEIF 163
A+ N++ L G + + G R ER V ++++VG+L +E++F
Sbjct: 206 TAVEKF-NRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF 264
Query: 164 SPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
S +G+V + ++ D E +SRG GFV S D AI+AL+G + G + + V A+
Sbjct: 265 SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDG-QNLEG--RAIRVNVAE 321
Query: 223 PKRPRPG 229
+ PR G
Sbjct: 322 ERPPRRG 328
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 204 (76.9 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 62/199 (31%), Positives = 101/199 (50%)
Query: 39 GGPSPDLV-DGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP PD V G ++FVG +P+ E+++ PLFEE G + ++ L+ D +GQ +G
Sbjct: 148 GGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRG 207
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
FI + E A A++ + PG + + A+ +LFVGS+ K
Sbjct: 208 YAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANN----------RLFVGSIPKNK 257
Query: 155 TEKEVEEIFSPY--GRVEDV-YLMRDELKQSRGCGFVKYS-HRDMALAAINALNGIYTMR 210
T++ + E FS G V+ + Y D+ K++RG F++Y H+ A A ++G +
Sbjct: 258 TKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVW 317
Query: 211 GCDQPLTVRFADP-KRPRP 228
G +TV +ADP + P P
Sbjct: 318 G--NVVTVEWADPVEEPDP 334
Score = 143 (55.4 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 50/160 (31%), Positives = 81/160 (50%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK +E+I F + +++V L DKK + +G CF++Y + A +
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 304
Query: 109 AIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK---LFVGSLNKQATEKEVEEIFSP 165
A R L + G + V +AD E V K LFV +L TE+ +E+ FS
Sbjct: 305 ARRRLMSGKVKVWG-NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205
+G++E V ++D FV + R A+ A++ +NG
Sbjct: 364 FGKLERVKKLKDY-------AFVHFEDRGAAVKAMDEMNG 396
Score = 39 (18.8 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 272 PMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPA 310
P PR G G G+ + P G GGPA
Sbjct: 511 PPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPA 549
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 189 (71.6 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 52/177 (29%), Positives = 94/177 (53%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L++G + E I+ ++ G ++V LI+++ TG G CF+++A+ EA A+ ++
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SM 153
Query: 114 HNQHTLPGGVGPIQVRYADG----ERERLGAVEYKLFVGSLNKQATEKEVEEIF-SPYGR 168
+N+ +PG ++ +A G E+ A EY +FVG L+ E +V +F S Y
Sbjct: 154 NNK-PIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNS 212
Query: 169 VEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
+ +M D + SRG GFV+++ + +A+ + G + G D+P+ V A PK
Sbjct: 213 CKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQG--QICG-DRPIRVGLATPK 266
Score = 106 (42.4 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALN 204
+FVG L+K +E+E++ +F +G + VY+ ++ +GCGFV++ +R A AIN L
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYV---KIPPGKGCGFVQFVNRQSAEIAINQLQ 359
Query: 205 G 205
G
Sbjct: 360 G 360
Score = 73 (30.8 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 24/101 (23%), Positives = 43/101 (42%)
Query: 32 KRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVA-LIKDKKTG 90
K ++ GG + +S +FVG + E D+ LF N + A ++ D +T
Sbjct: 166 KLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTN 225
Query: 91 QQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYA 131
+G F+++ + A+ + Q G PI+V A
Sbjct: 226 VSRGYGFVRFTDENDQKSALAEMQGQIC---GDRPIRVGLA 263
Score = 46 (21.3 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 266 PQNAWHPMSPRNMGPLSNPGIRGFGNQLPP 295
P++ H SP N+ P+S P + GF + P
Sbjct: 265 PKSKAHVFSPVNVVPVSMPPV-GFYSAAQP 293
Score = 42 (19.8 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 293 LPPRSGDLGMPLNPGGPADVP 313
L R +GM ++ G PA VP
Sbjct: 425 LQTRGAPIGMEISIGSPALVP 445
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 193 (73.0 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 50/172 (29%), Positives = 87/172 (50%)
Query: 41 PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P + + KLF+G + +E+++ FE+ GN+++V ++KD +T + +G FI Y
Sbjct: 20 PQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITY 79
Query: 101 ATSEEADRAIRALHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKE 158
+ S D A ++ H + G V P + V D + GA KLFVG+L E+
Sbjct: 80 SHSSMIDEAQKS--RPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQS 137
Query: 159 VEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRD----MALAAINALNG 205
+ + F +G + D+ ++ D E + RG FV++ D + L + LNG
Sbjct: 138 IRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNG 189
Score = 134 (52.2 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 32 KRGFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQ 91
KR + SP+ G++ KLFVG++ E+ IR F+ GN++++ ++ DK+TG+
Sbjct: 104 KRAVPRQDIDSPNA--GATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGK 161
Query: 92 QQGCCFIKYATSEEADRAIRALHNQHTLPG 121
++G F+++ + D+ + L QH L G
Sbjct: 162 KRGFAFVEFDDYDPVDKVV--LQKQHQLNG 189
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 203 (76.5 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 60/199 (30%), Positives = 102/199 (51%)
Query: 39 GGPSPDLV-DGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP PD V G ++FVG +P+ E+++ PLFE+ G + ++ L+ D +GQ +G
Sbjct: 176 GGPPPDTVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRG 235
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
FI + + + A A++ N PG + + A+ +LFVGS+ K
Sbjct: 236 YAFITFCSKDAAQEAVKLCDNYEIRPGKHLGVCISVANN----------RLFVGSIPKNK 285
Query: 155 TEKEVEEIFSPY--GRVEDV-YLMRDELKQSRGCGFVKYS-HRDMALAAINALNGIYTMR 210
T++ + E F+ G V+ + Y D+ K++RG F++Y H+ A A ++G +
Sbjct: 286 TKENILEEFNKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVW 345
Query: 211 GCDQPLTVRFADP-KRPRP 228
G +TV +ADP + P P
Sbjct: 346 G--NVVTVEWADPVEEPDP 362
Score = 148 (57.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 51/160 (31%), Positives = 81/160 (50%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK +E+I F + +++V L DKK + +G CF++Y + A +
Sbjct: 275 RLFVGSIPKNKTKENILEEFNKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 332
Query: 109 AIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK---LFVGSLNKQATEKEVEEIFSP 165
A R L + G + V +AD E V K LFV +L TE+ +E+ FS
Sbjct: 333 ARRRLMSGKVKVWG-NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 391
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205
+G++E V ++D FV + R A+ A+N +NG
Sbjct: 392 FGKLERVKKLKDY-------AFVHFEDRGAAVKAMNEMNG 424
Score = 40 (19.1 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 272 PMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPA 310
P PR G G G+ + P G GGPA
Sbjct: 540 PPPPRGRGAPPPRGRAGYSQRGAPMGPPRGARGGRGGPA 578
>MGI|MGI:2387367 [details] [associations]
symbol:Rbm45 "RNA binding motif protein 45" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2387367 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD EMBL:AB036992 EMBL:AY152391
EMBL:AK089975 EMBL:BC057890 IPI:IPI00221908 RefSeq:NP_700454.1
UniGene:Mm.33310 ProteinModelPortal:Q8BHN5 SMR:Q8BHN5 STRING:Q8BHN5
PhosphoSite:Q8BHN5 PaxDb:Q8BHN5 PRIDE:Q8BHN5
Ensembl:ENSMUST00000046389 GeneID:241490 KEGG:mmu:241490
GeneTree:ENSGT00680000100059 InParanoid:Q8BHN5 OrthoDB:EOG43R3MJ
NextBio:385019 Bgee:Q8BHN5 CleanEx:MM_RBM45 Genevestigator:Q8BHN5
GermOnline:ENSMUSG00000042369 Uniprot:Q8BHN5
Length = 476
Score = 195 (73.7 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 57/204 (27%), Positives = 99/204 (48%)
Query: 34 GFSGRGG--PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQ 91
G G GG P D +D +++F+ + K E +R F G++ ++ +++DK T +
Sbjct: 6 GLGGSGGFRPGVDSLDEPPNSRIFL-VISKHTSELVLRERFSPFGDIQDIWVVRDKHTKE 64
Query: 92 QQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD----GERERLGAVEY-KLF 146
+G F+K+A S +A RA+ +H Q P PI+V A G + E ++F
Sbjct: 65 SKGVAFVKFARSSQACRAMEEMHGQCLGPSDTKPIKVFIAQSRSSGSHRDVEDEELTRIF 124
Query: 147 VGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNG 205
V + K TE+++ E F YG +E ++++++ +S+G G+V+Y A AI
Sbjct: 125 V-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIE---- 179
Query: 206 IYTMRGCDQPLTVRFADPKRPRPG 229
CD+ A+PK G
Sbjct: 180 -----NCDRSFRALLAEPKNKVSG 198
Score = 124 (48.7 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 31/101 (30%), Positives = 54/101 (53%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
V+ ++FV +PK+ EED+R F+ +G++ ++IK+K TG+ +G +++Y +
Sbjct: 115 VEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQ 173
Query: 106 A-------DRAIRALHNQHTLPGGVGPIQVRYADGERERLG 139
A DR+ RAL + P Q Y+ G +E LG
Sbjct: 174 AAQAIENCDRSFRALLAEPKNKVSGSPEQDDYSSGRQEALG 214
Score = 76 (31.8 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 29/86 (33%), Positives = 42/86 (48%)
Query: 141 VEYKLFVGSLNKQATEKEV-EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAA 199
V+ +LFV N +V E+IF +G + +VYL+ + G+VKY+ R A A
Sbjct: 390 VKERLFV-VFNPHPLPLDVLEDIFCRFGNLIEVYLV-----SGKNVGYVKYADRKSANEA 443
Query: 200 INALNGIYTMRGCDQPLTVRFADPKR 225
I L+G + G L V AD R
Sbjct: 444 ITTLHG-KILNGVR--LKVMLADSPR 466
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 184 (69.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 53/180 (29%), Positives = 91/180 (50%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQ-----------GCCFIKYAT 102
L V +P+ ++++R LF G V LI+DK G + G F+ Y
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLN 81
Query: 103 SEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEI 162
+++A+RAI L N L I+V +A E + + L++ L + T+K+VE++
Sbjct: 82 AKDAERAINTL-NGLRLQSKT--IKVSFARPSSESIK--DANLYISGLPRTMTQKDVEDM 136
Query: 163 FSPYGRVEDVYLMRDELKQ-SRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA 221
F P+G + + ++ D+ SRG F+++ R A AI + NG + G +P+TV+FA
Sbjct: 137 FLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG-HKPPGSSEPITVKFA 195
Score = 136 (52.9 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A L++ +P+T ++D+ +F G++I ++ D+ TG +G FI++ EA+ AI
Sbjct: 117 ANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAI- 175
Query: 112 ALHNQHTLPGGVGPIQVRYA 131
A N H PG PI V++A
Sbjct: 176 ASFNGHKPPGSSEPITVKFA 195
Score = 101 (40.6 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 145 LFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINAL 203
+FV +L + A E + ++F P+G V +V ++RD + +G GFV ++ + A AI +L
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 204 NGIYTMRGCDQPLTVRFADPK 224
NG Y + G D+ L V F K
Sbjct: 317 NG-YRL-G-DKTLQVSFKTSK 334
>UNIPROTKB|E9PKU1 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0007286 "spermatid
development" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007286 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040018
GO:GO:0003676 EMBL:AC090559 HGNC:HGNC:2549 ChiTaRS:CELF1
GO:GO:0006376 IPI:IPI00982591 ProteinModelPortal:E9PKU1 SMR:E9PKU1
Ensembl:ENST00000528434 ArrayExpress:E9PKU1 Bgee:E9PKU1
Uniprot:E9PKU1
Length = 114
Score = 173 (66.0 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKY 100
PD D + K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ +
Sbjct: 35 PDQPDLDAI-KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 93
Query: 101 ATSEEADRAIRALHNQHTLPG 121
T + A A ALHN LPG
Sbjct: 94 YTRKAALEAQNALHNMKVLPG 114
Score = 125 (49.1 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103
Query: 201 NALNGIYTMRG 211
NAL+ + + G
Sbjct: 104 NALHNMKVLPG 114
>UNIPROTKB|E9PQK4 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0007286 "spermatid
development" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007286 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040018
GO:GO:0003676 EMBL:AC090559 HGNC:HGNC:2549 ChiTaRS:CELF1
GO:GO:0006376 IPI:IPI00982054 ProteinModelPortal:E9PQK4 SMR:E9PQK4
Ensembl:ENST00000525841 ArrayExpress:E9PQK4 Bgee:E9PQK4
Uniprot:E9PQK4
Length = 87
Score = 173 (66.0 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG--QQQGCCFIKY 100
PD D + K+FVG VP+T E+D+R LFE++G V E+ +++D+ Q +GCCF+ +
Sbjct: 8 PDQPDLDAI-KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTF 66
Query: 101 ATSEEADRAIRALHNQHTLPG 121
T + A A ALHN LPG
Sbjct: 67 YTRKAALEAQNALHNMKVLPG 87
Score = 125 (49.1 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK---QSRGCGFVKYSHRDMALAAI 200
K+FVG + + +EK++ E+F YG V ++ ++RD + QS+GC FV + R AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 201 NALNGIYTMRG 211
NAL+ + + G
Sbjct: 77 NALHNMKVLPG 87
>UNIPROTKB|D6RBS9 [details] [associations]
symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965845
ProteinModelPortal:D6RBS9 SMR:D6RBS9 Ensembl:ENST00000515053
ArrayExpress:D6RBS9 Bgee:D6RBS9 Uniprot:D6RBS9
Length = 217
Score = 173 (66.0 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 57/182 (31%), Positives = 87/182 (47%)
Query: 31 QKRGFSGRGGPSPDLVDG---SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK 87
Q+ G GGP P +G ++FVG +P+ E+++ P+FE G + E+ L+ D
Sbjct: 48 QENGQRKYGGPPPGW-EGPHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDF 106
Query: 88 KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFV 147
G+ +G F+ Y EA RA+R L+N PG + + D R LF+
Sbjct: 107 D-GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCS-VDNCR---------LFI 155
Query: 148 GSLNKQATEKEV-EEIFSPYGRVEDV--YLMRDELKQSRGCGFVKY-SHRDMALAAINAL 203
G + K +E+ EEI V DV Y + ++RG FV+Y SHR A+A +
Sbjct: 156 GGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 215
Query: 204 NG 205
G
Sbjct: 216 PG 217
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 186 (70.5 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 52/159 (32%), Positives = 86/159 (54%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
AKLFVG++P + + LFE+ G V +I ++ T Q +G F+ +T EEA++A+
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Query: 112 ALHNQHTLPGG---VGPIQVRYADGERE-RLGAVEYKLFVGSLNKQATEKEVEEIFSPYG 167
N + G V R + ER+ R+ ++++VG+L +E +FS +G
Sbjct: 173 KF-NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHG 231
Query: 168 RVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNG 205
+V D ++ D E +SRG GFV+ S+ + AI AL+G
Sbjct: 232 KVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDG 270
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 31/95 (32%), Positives = 55/95 (57%)
Query: 43 PDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYAT 102
P + D ++F +++VG++P + LF EHG V++ ++ D++TG+ +G F++ +
Sbjct: 200 PRVYD-AAF-RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSN 257
Query: 103 SEEADRAIRALHNQHTLPGGVGPIQVRYADGERER 137
E + AI AL Q+ L G I+V A+ ER R
Sbjct: 258 ENEVNVAIAALDGQN-LEGRA--IKVNVAE-ERTR 288
>UNIPROTKB|B3KWU8 [details] [associations]
symbol:RBM46 "Putative uncharacterized protein MGC27016"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 EMBL:CH471056 CTD:166863 RefSeq:NP_659416.1
UniGene:Hs.133095 GeneID:166863 KEGG:hsa:166863 HGNC:HGNC:28401
PharmGKB:PA162400810 GenomeRNAi:166863 NextBio:88637 EMBL:AC009567
EMBL:AK125877 IPI:IPI00967774 SMR:B3KWU8 STRING:B3KWU8
Ensembl:ENST00000510397 UCSC:uc003iop.1 Uniprot:B3KWU8
Length = 470
Score = 193 (73.0 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 62/202 (30%), Positives = 102/202 (50%)
Query: 31 QKRGFSGRGGPSPDLVDGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK 87
Q+ G GGP P +G ++FVG +P+ E+++ P+FE G + E L+ +
Sbjct: 38 QENGQRKFGGPPPGW-EGPPPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF 96
Query: 88 KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFV 147
+G+ +G F+ Y T EEA AIR L+N PG + V D R LF+
Sbjct: 97 -SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR---------LFI 145
Query: 148 GSLNKQATEKEV-EEIFSPYGRVEDV--YLMRDELKQSRGCGFVKY-SHRDMALAAINAL 203
G++ K+ ++E+ +E+ V DV Y + ++RG FV+Y SHR A+A +
Sbjct: 146 GAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLI 205
Query: 204 NGIYTMRGCDQPLTVRFADPKR 225
G + + G + V +ADP++
Sbjct: 206 PGTFQLWG--HTIQVDWADPEK 225
>UNIPROTKB|E2RTF9 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
EMBL:AAEX03010068 Ensembl:ENSCAFT00000037016 Uniprot:E2RTF9
Length = 485
Score = 193 (73.0 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 62/202 (30%), Positives = 102/202 (50%)
Query: 31 QKRGFSGRGGPSPDLVDGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK 87
Q+ G GGP P +G ++FVG +P+ E+++ P+FE G + E L+ +
Sbjct: 38 QENGQRKFGGPPPGW-EGPPPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF 96
Query: 88 KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFV 147
+G+ +G F+ Y T EEA AIR L+N PG + V D R LF+
Sbjct: 97 -SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR---------LFI 145
Query: 148 GSLNKQATEKEV-EEIFSPYGRVEDV--YLMRDELKQSRGCGFVKY-SHRDMALAAINAL 203
G++ K+ ++E+ +E+ V DV Y + ++RG FV+Y SHR A+A +
Sbjct: 146 GAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLI 205
Query: 204 NGIYTMRGCDQPLTVRFADPKR 225
G + + G + V +ADP++
Sbjct: 206 PGTFQLWG--HTIQVDWADPEK 225
>UNIPROTKB|B4DZ27 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003676 UniGene:Hs.133095 HGNC:HGNC:28401 EMBL:AC009567
EMBL:AK302720 IPI:IPI00967437 SMR:B4DZ27 STRING:B4DZ27
Ensembl:ENST00000514866 UCSC:uc011cim.1 Uniprot:B4DZ27
Length = 485
Score = 193 (73.0 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 62/202 (30%), Positives = 102/202 (50%)
Query: 31 QKRGFSGRGGPSPDLVDGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK 87
Q+ G GGP P +G ++FVG +P+ E+++ P+FE G + E L+ +
Sbjct: 38 QENGQRKFGGPPPGW-EGPPPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF 96
Query: 88 KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFV 147
+G+ +G F+ Y T EEA AIR L+N PG + V D R LF+
Sbjct: 97 -SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR---------LFI 145
Query: 148 GSLNKQATEKEV-EEIFSPYGRVEDV--YLMRDELKQSRGCGFVKY-SHRDMALAAINAL 203
G++ K+ ++E+ +E+ V DV Y + ++RG FV+Y SHR A+A +
Sbjct: 146 GAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLI 205
Query: 204 NGIYTMRGCDQPLTVRFADPKR 225
G + + G + V +ADP++
Sbjct: 206 PGTFQLWG--HTIQVDWADPEK 225
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 183 (69.5 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 45/167 (26%), Positives = 85/167 (50%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
+ KLF+G + EE +R +++ G + + +++D + + +GC F+ +++ E
Sbjct: 4 EAEQIRKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEV 63
Query: 107 DRAIRALHNQHTLPGGV-GPIQV--RYADGERERLGAVEYKLFVGSLNKQATEKEVEEIF 163
D A+ A H++ G V P + R A G+R ++ KLFVG + + E + E F
Sbjct: 64 DAAMAA--RPHSIDGRVLEPRRAIPREASGQRGAHWTLK-KLFVGGIKEDTEEHHLREYF 120
Query: 164 SPYGRVEDVYLMRDELK-QSRGCGFVKYSHRD----MALAAINALNG 205
YG+++ + ++ D + RG GFV + D + L +A+NG
Sbjct: 121 EKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAING 167
Score = 45 (20.9 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 271 HPMSPRNMGPLSNPGIRGFG-NQLPPRSGDLGMPLNPGG 308
+ P N GP+ N G G G N+ P G P GG
Sbjct: 282 YDQQPSNYGPMRN-GNFGVGRNKAAPYGGGNYGPGGSGG 319
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 178 (67.7 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 52/193 (26%), Positives = 98/193 (50%)
Query: 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADR 108
+ F ++V ++ ++ ++D++ F E+G + ++KD + G+ +G F+ + +++A R
Sbjct: 212 TKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAAR 270
Query: 109 AIRALHNQHTLPGG---VGPIQ----------VRYADGERERLGAVEYK-LFVGSLNKQA 154
A+ +L N H VG Q VRY +E + L+V +L+
Sbjct: 271 AVESL-NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSI 329
Query: 155 TEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQ 214
++++++EIFSP+G V +MRD S+G GFV ++ + A A++ L+G +
Sbjct: 330 SDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIE---SK 386
Query: 215 PLTVRFADPKRPR 227
PL V A K R
Sbjct: 387 PLYVAIAQRKEDR 399
Score = 169 (64.5 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 46/155 (29%), Positives = 79/155 (50%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L+VG + + + F + G V+ V + +D T + G ++ + ++A RAI+ L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 114 HNQHTLPGGVGPIQVRYA--DGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
N L G PI+V Y+ D R GA +F+ +L++ K + + FS +G +
Sbjct: 98 -NYIPLYGK--PIRVMYSHRDPSVRRSGAGN--IFIKNLDESIDHKALHDTFSSFGNIVS 152
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGI 206
+ D QS+G GFV+Y++ + A AI LNG+
Sbjct: 153 CKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGM 187
Score = 168 (64.2 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 42/161 (26%), Positives = 81/161 (50%)
Query: 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADR 108
S +F+ ++ ++ + + F GN++ + D +GQ +G F++YA E A +
Sbjct: 121 SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQK 179
Query: 109 AIRALHNQ--HTLPGGVGPIQVRYADGERERLG-AVEY-KLFVGSLNKQATEKEVEEIFS 164
AI L+ + VGP R ER+ ++ ++V +L + T+ +++ F
Sbjct: 180 AIEKLNGMLLNDKQVYVGPFLRRQ---ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFG 236
Query: 165 PYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205
YG++ +M+D +S+G GFV + + D A A+ +LNG
Sbjct: 237 EYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 277
Score = 63 (27.2 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 22/61 (36%), Positives = 26/61 (42%)
Query: 292 QLPPRSGDLGMPLNPGGPADVPLP---GLAVSSTSSALQQNFCQ--PESQAPSLGQQISP 346
Q+ PR P GG DVP P G + T AL N PE Q LG+ + P
Sbjct: 507 QMHPRGRMFRYPQGRGGSGDVP-PYDMGNNMPLTIGALASNLSNATPEQQRTMLGEVLYP 565
Query: 347 L 347
L
Sbjct: 566 L 566
Score = 43 (20.2 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 393 LPSQHLLGMSGNL-PASQPQGQQIASSSTALPTPLNIKPQSSSLPGG 438
+P Q G L P +P G + S + P +P PGG
Sbjct: 447 IPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPGGGRRPGG 493
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 171 (65.3 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 45/150 (30%), Positives = 71/150 (47%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + + +E +R F ++G V++ ++KDK T Q +G F+K+ + +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
HTL G R G R + K+FVG + E E+ E F +G V +V
Sbjct: 71 --RPHTLDG-------RNQKGPRSD-NSKSNKIFVGGIPHNCGETELREYFKKFGVVTEV 120
Query: 173 YLMRDELKQS-RGCGFVKYSHRDMALAAIN 201
++ D KQ RG GF+ + A+N
Sbjct: 121 VMIYDAEKQRPRGFGFITFEDEQSVDQAVN 150
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 198 (74.8 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 53/174 (30%), Positives = 89/174 (51%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+F+G + E+++R F ++G V ++ ++KD TG+ +G F+ + D ++
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 113 LHNQHTLPGGV-GPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
QH L G V P + D E+++ G K+FVG + KE EE FS +G + D
Sbjct: 220 ---QHILDGKVIDPKRAIPRD-EQDKTG----KIFVGGIGPDVRPKEFEEFFSQWGTIID 271
Query: 172 VYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPK 224
LM D + QSRG GFV Y D A+ + N + D+ + ++ A+P+
Sbjct: 272 AQLMLDKDTGQSRGFGFVTYDSAD-AVDRV-CQNKFIDFK--DRKIEIKRAEPR 321
Score = 39 (18.8 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 275 PRNMGPLS-NPGIRGFGNQLPPRSGDLG 301
PR+M S N G GN + R G+ G
Sbjct: 320 PRHMQQKSSNNGGNNGGNNMNRRGGNFG 347
>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
symbol:syncrip "synaptotagmin binding, cytoplasmic
RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
Length = 694
Score = 195 (73.7 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 59/199 (29%), Positives = 102/199 (51%)
Query: 39 GGPSPDLV-DGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP P+ V G+ ++FVG +P+ E+++ P FE+ G + ++ L+ D +G +G
Sbjct: 209 GGPPPESVYTGAQPTVGTEIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRG 268
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
F+ + T E A A++ +N PG + + A+ +LFVGS+ K
Sbjct: 269 YAFLTFCTKEAAQEAVKLCNNHEIRPGKHIGVCISVANN----------RLFVGSIPKSK 318
Query: 155 TEKEVEEIFSPYGR-VEDVYLMR--DELKQSRGCGFVKYS-HRDMALAAINALNGIYTMR 210
T++++ E FS + DV L D+ K++RG F++Y H+ A A ++G +
Sbjct: 319 TKEQIVEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVW 378
Query: 211 GCDQPLTVRFADP-KRPRP 228
G +TV +ADP + P P
Sbjct: 379 G--NLVTVEWADPIEDPDP 395
Score = 138 (53.6 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 53/179 (29%), Positives = 89/179 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK+ +E I F + + +V L DKK + +G CF++Y + A +
Sbjct: 308 RLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQ 365
Query: 109 AIRALHNQHTLPGGVGPIQVRYADG----ERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164
A R L + G + V +AD + E + V+ LFV +L TE+ +E+ F
Sbjct: 366 ARRRLMSGKVKVWG-NLVTVEWADPIEDPDPEVMAKVKV-LFVRNLANSVTEEILEKAFG 423
Query: 165 PYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+G +E V ++D FV ++ RD A+ A+ +NG + G + + + FA P
Sbjct: 424 QFGNLERVKKLKDY-------AFVHFNDRDGAVKALTEMNG-KELEG--EHIEIVFAKP 472
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 200 (75.5 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 61/199 (30%), Positives = 101/199 (50%)
Query: 39 GGPSPDLV-DGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP PD V G ++FVG +P+ E+++ PLFE+ G + ++ L+ D +GQ +G
Sbjct: 148 GGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRG 207
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
FI + E A A++ + PG + + A+ +LFVGS+ K
Sbjct: 208 YAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANN----------RLFVGSIPKNK 257
Query: 155 TEKEVEEIFSPY--GRVEDV-YLMRDELKQSRGCGFVKYS-HRDMALAAINALNGIYTMR 210
T++ + E FS G V+ + Y D+ K++RG F++Y H+ A A ++G +
Sbjct: 258 TKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVW 317
Query: 211 GCDQPLTVRFADP-KRPRP 228
G +TV +ADP + P P
Sbjct: 318 G--NVVTVEWADPVEEPDP 334
Score = 143 (55.4 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 50/160 (31%), Positives = 81/160 (50%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK +E+I F + +++V L DKK + +G CF++Y + A +
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 304
Query: 109 AIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK---LFVGSLNKQATEKEVEEIFSP 165
A R L + G + V +AD E V K LFV +L TE+ +E+ FS
Sbjct: 305 ARRRLMSGKVKVWG-NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205
+G++E V ++D FV + R A+ A++ +NG
Sbjct: 364 FGKLERVKKLKDY-------AFVHFEDRGAAVKAMDEMNG 396
Score = 39 (18.8 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 272 PMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPA 310
P PR G G G+ + P G GGPA
Sbjct: 511 PPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPA 549
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 200 (75.5 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 61/199 (30%), Positives = 101/199 (50%)
Query: 39 GGPSPDLV-DGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP PD V G ++FVG +P+ E+++ PLFE+ G + ++ L+ D +GQ +G
Sbjct: 148 GGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRG 207
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
FI + E A A++ + PG + + A+ +LFVGS+ K
Sbjct: 208 YAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANN----------RLFVGSIPKNK 257
Query: 155 TEKEVEEIFSPY--GRVEDV-YLMRDELKQSRGCGFVKYS-HRDMALAAINALNGIYTMR 210
T++ + E FS G V+ + Y D+ K++RG F++Y H+ A A ++G +
Sbjct: 258 TKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVW 317
Query: 211 GCDQPLTVRFADP-KRPRP 228
G +TV +ADP + P P
Sbjct: 318 G--NVVTVEWADPVEEPDP 334
Score = 143 (55.4 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 50/160 (31%), Positives = 81/160 (50%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK +E+I F + +++V L DKK + +G CF++Y + A +
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 304
Query: 109 AIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK---LFVGSLNKQATEKEVEEIFSP 165
A R L + G + V +AD E V K LFV +L TE+ +E+ FS
Sbjct: 305 ARRRLMSGKVKVWG-NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205
+G++E V ++D FV + R A+ A++ +NG
Sbjct: 364 FGKLERVKKLKDY-------AFVHFEDRGAAVKAMDEMNG 396
Score = 39 (18.8 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 272 PMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPA 310
P PR G G G+ + P G GGPA
Sbjct: 512 PPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPA 550
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 200 (75.5 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 61/199 (30%), Positives = 101/199 (50%)
Query: 39 GGPSPDLV-DGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP PD V G ++FVG +P+ E+++ PLFE+ G + ++ L+ D +GQ +G
Sbjct: 148 GGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRG 207
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
FI + E A A++ + PG + + A+ +LFVGS+ K
Sbjct: 208 YAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANN----------RLFVGSIPKNK 257
Query: 155 TEKEVEEIFSPY--GRVEDV-YLMRDELKQSRGCGFVKYS-HRDMALAAINALNGIYTMR 210
T++ + E FS G V+ + Y D+ K++RG F++Y H+ A A ++G +
Sbjct: 258 TKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVW 317
Query: 211 GCDQPLTVRFADP-KRPRP 228
G +TV +ADP + P P
Sbjct: 318 G--NVVTVEWADPVEEPDP 334
Score = 143 (55.4 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 50/160 (31%), Positives = 81/160 (50%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK +E+I F + +++V L DKK + +G CF++Y + A +
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 304
Query: 109 AIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK---LFVGSLNKQATEKEVEEIFSP 165
A R L + G + V +AD E V K LFV +L TE+ +E+ FS
Sbjct: 305 ARRRLMSGKVKVWG-NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205
+G++E V ++D FV + R A+ A++ +NG
Sbjct: 364 FGKLERVKKLKDY-------AFVHFEDRGAAVKAMDEMNG 396
Score = 39 (18.8 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 272 PMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPA 310
P PR G G G+ + P G GGPA
Sbjct: 512 PPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPA 550
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 200 (75.5 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 61/199 (30%), Positives = 101/199 (50%)
Query: 39 GGPSPDLV-DGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP PD V G ++FVG +P+ E+++ PLFE+ G + ++ L+ D +GQ +G
Sbjct: 148 GGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRG 207
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
FI + E A A++ + PG + + A+ +LFVGS+ K
Sbjct: 208 YAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANN----------RLFVGSIPKNK 257
Query: 155 TEKEVEEIFSPY--GRVEDV-YLMRDELKQSRGCGFVKYS-HRDMALAAINALNGIYTMR 210
T++ + E FS G V+ + Y D+ K++RG F++Y H+ A A ++G +
Sbjct: 258 TKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVW 317
Query: 211 GCDQPLTVRFADP-KRPRP 228
G +TV +ADP + P P
Sbjct: 318 G--NVVTVEWADPVEEPDP 334
Score = 143 (55.4 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 50/160 (31%), Positives = 81/160 (50%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK +E+I F + +++V L DKK + +G CF++Y + A +
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 304
Query: 109 AIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK---LFVGSLNKQATEKEVEEIFSP 165
A R L + G + V +AD E V K LFV +L TE+ +E+ FS
Sbjct: 305 ARRRLMSGKVKVWG-NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205
+G++E V ++D FV + R A+ A++ +NG
Sbjct: 364 FGKLERVKKLKDY-------AFVHFEDRGAAVKAMDEMNG 396
Score = 39 (18.8 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 272 PMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPA 310
P PR G G G+ + P G GGPA
Sbjct: 512 PPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPA 550
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 187 (70.9 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 50/153 (32%), Positives = 80/153 (52%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCC-FIKYATSEEADRAIR 111
KLFVG + + +R FE+ GN+ + ++++ + Q+ C F+ Y+TSEEAD A+
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQL-QRSRCFGFVTYSTSEEADAAMA 67
Query: 112 ALHNQHTLPGGVGPIQ---VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR 168
A H + G ++ R G E L V+ K+FVG L EK++ E FS +G
Sbjct: 68 A--RPHVVDGKNVEVKRAVAREDAGRPEALAKVK-KIFVGGLKDDIEEKDLTEFFSQFGM 124
Query: 169 VEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAI 200
+E ++ D + + RG GFV + D A A+
Sbjct: 125 IEKSEVITDKDTGKKRGFGFVHFEDNDSADKAV 157
>MGI|MGI:3645057 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:3645057 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 GO:GO:0003723 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW OMA:YPGTKLT EMBL:AC158935 IPI:IPI00672754
RefSeq:NP_001139800.1 UniGene:Mm.265114 ProteinModelPortal:P86049
SMR:P86049 PhosphoSite:P86049 PaxDb:P86049 PRIDE:P86049
Ensembl:ENSMUST00000048647 GeneID:633285 KEGG:mmu:633285
UCSC:uc012cqu.1 NextBio:422664 Bgee:P86049 Genevestigator:P86049
Uniprot:P86049
Length = 533
Score = 193 (73.0 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 62/202 (30%), Positives = 102/202 (50%)
Query: 31 QKRGFSGRGGPSPDLVDGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK 87
Q+ G GGP P +G ++FVG +P+ E+++ P+FE G + E L+ +
Sbjct: 38 QENGQRKFGGPPPGW-EGPPPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF 96
Query: 88 KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFV 147
+G+ +G F+ Y T EEA AIR L+N PG + V D R LF+
Sbjct: 97 -SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR---------LFI 145
Query: 148 GSLNKQATEKEV-EEIFSPYGRVEDV--YLMRDELKQSRGCGFVKY-SHRDMALAAINAL 203
G++ K+ ++E+ +E+ V DV Y + ++RG FV+Y SHR A+A +
Sbjct: 146 GAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLI 205
Query: 204 NGIYTMRGCDQPLTVRFADPKR 225
G + + G + V +ADP++
Sbjct: 206 PGTFQLWG--HTIQVDWADPEK 225
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 50/163 (30%), Positives = 84/163 (51%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIKDK--KTGQQQGCCFIKYATSEEADRA 109
+LF+G++PK ++E+I ++ V++V + KT + +G F++Y + A A
Sbjct: 142 RLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKT-KNRGFAFVEYESHRAAAMA 200
Query: 110 IRAL-HNQHTLPGGVGPIQVRYADGERE----RLGAVEYKLFVGSLNKQATEKEVEEIFS 164
R L L G IQV +AD E+E + V+ L+V +L TE+ ++ FS
Sbjct: 201 RRKLIPGTFQLWGHT--IQVDWADPEKEVDEETMQRVKV-LYVRNLMISTTEETIKAEFS 257
Query: 165 PY--GRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205
+ G VE V +RD FV + HR+ A+AA++ +NG
Sbjct: 258 KFKPGAVERVKKLRDY-------AFVHFFHREDAVAAMSVMNG 293
>UNIPROTKB|E1BB24 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:DAAA02044105 EMBL:DAAA02044106
IPI:IPI00711895 RefSeq:NP_001179648.1 UniGene:Bt.52151
ProteinModelPortal:E1BB24 Ensembl:ENSBTAT00000002223 GeneID:532175
KEGG:bta:532175 NextBio:20875624 Uniprot:E1BB24
Length = 533
Score = 193 (73.0 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 62/202 (30%), Positives = 102/202 (50%)
Query: 31 QKRGFSGRGGPSPDLVDGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK 87
Q+ G GGP P +G ++FVG +P+ E+++ P+FE G + E L+ +
Sbjct: 38 QENGQRKFGGPPPGW-EGPPPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF 96
Query: 88 KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFV 147
+G+ +G F+ Y T EEA AIR L+N PG + V D R LF+
Sbjct: 97 -SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR---------LFI 145
Query: 148 GSLNKQATEKEV-EEIFSPYGRVEDV--YLMRDELKQSRGCGFVKY-SHRDMALAAINAL 203
G++ K+ ++E+ +E+ V DV Y + ++RG FV+Y SHR A+A +
Sbjct: 146 GAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLI 205
Query: 204 NGIYTMRGCDQPLTVRFADPKR 225
G + + G + V +ADP++
Sbjct: 206 PGTFQLWG--HTIQVDWADPEK 225
>UNIPROTKB|E2R8F4 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:AAEX03010068 RefSeq:XP_532699.1
ProteinModelPortal:E2R8F4 Ensembl:ENSCAFT00000013439 GeneID:475475
KEGG:cfa:475475 NextBio:20851314 Uniprot:E2R8F4
Length = 533
Score = 193 (73.0 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 62/202 (30%), Positives = 102/202 (50%)
Query: 31 QKRGFSGRGGPSPDLVDGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK 87
Q+ G GGP P +G ++FVG +P+ E+++ P+FE G + E L+ +
Sbjct: 38 QENGQRKFGGPPPGW-EGPPPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF 96
Query: 88 KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFV 147
+G+ +G F+ Y T EEA AIR L+N PG + V D R LF+
Sbjct: 97 -SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR---------LFI 145
Query: 148 GSLNKQATEKEV-EEIFSPYGRVEDV--YLMRDELKQSRGCGFVKY-SHRDMALAAINAL 203
G++ K+ ++E+ +E+ V DV Y + ++RG FV+Y SHR A+A +
Sbjct: 146 GAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLI 205
Query: 204 NGIYTMRGCDQPLTVRFADPKR 225
G + + G + V +ADP++
Sbjct: 206 PGTFQLWG--HTIQVDWADPEK 225
>UNIPROTKB|Q8TBY0 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:CH471056 CTD:166863 eggNOG:NOG235650
EMBL:BC028588 IPI:IPI00152304 RefSeq:NP_659416.1 UniGene:Hs.133095
HSSP:Q9NQ94 ProteinModelPortal:Q8TBY0 SMR:Q8TBY0 STRING:Q8TBY0
PhosphoSite:Q8TBY0 DMDM:74760436 PaxDb:Q8TBY0 PRIDE:Q8TBY0
Ensembl:ENST00000281722 GeneID:166863 KEGG:hsa:166863
UCSC:uc003ioo.3 GeneCards:GC04P155702 HGNC:HGNC:28401 HPA:HPA050601
neXtProt:NX_Q8TBY0 PharmGKB:PA162400810 InParanoid:Q8TBY0
OMA:YPGTKLT PhylomeDB:Q8TBY0 GenomeRNAi:166863 NextBio:88637
ArrayExpress:Q8TBY0 Bgee:Q8TBY0 CleanEx:HS_RBM46
Genevestigator:Q8TBY0 Uniprot:Q8TBY0
Length = 533
Score = 193 (73.0 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 62/202 (30%), Positives = 102/202 (50%)
Query: 31 QKRGFSGRGGPSPDLVDGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK 87
Q+ G GGP P +G ++FVG +P+ E+++ P+FE G + E L+ +
Sbjct: 38 QENGQRKFGGPPPGW-EGPPPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF 96
Query: 88 KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFV 147
+G+ +G F+ Y T EEA AIR L+N PG + V D R LF+
Sbjct: 97 -SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR---------LFI 145
Query: 148 GSLNKQATEKEV-EEIFSPYGRVEDV--YLMRDELKQSRGCGFVKY-SHRDMALAAINAL 203
G++ K+ ++E+ +E+ V DV Y + ++RG FV+Y SHR A+A +
Sbjct: 146 GAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLI 205
Query: 204 NGIYTMRGCDQPLTVRFADPKR 225
G + + G + V +ADP++
Sbjct: 206 PGTFQLWG--HTIQVDWADPEK 225
>UNIPROTKB|F1RYR7 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OMA:YPGTKLT EMBL:CU855658 RefSeq:XP_003129173.1
UniGene:Ssc.94502 Ensembl:ENSSSCT00000009851 GeneID:100513804
KEGG:ssc:100513804 Uniprot:F1RYR7
Length = 533
Score = 193 (73.0 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 62/202 (30%), Positives = 102/202 (50%)
Query: 31 QKRGFSGRGGPSPDLVDGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK 87
Q+ G GGP P +G ++FVG +P+ E+++ P+FE G + E L+ +
Sbjct: 38 QENGQRKFGGPPPGW-EGPPPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF 96
Query: 88 KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFV 147
+G+ +G F+ Y T EEA AIR L+N PG + V D R LF+
Sbjct: 97 -SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR---------LFI 145
Query: 148 GSLNKQATEKEV-EEIFSPYGRVEDV--YLMRDELKQSRGCGFVKY-SHRDMALAAINAL 203
G++ K+ ++E+ +E+ V DV Y + ++RG FV+Y SHR A+A +
Sbjct: 146 GAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLI 205
Query: 204 NGIYTMRGCDQPLTVRFADPKR 225
G + + G + V +ADP++
Sbjct: 206 PGTFQLWG--HTIQVDWADPEK 225
>RGD|1560205 [details] [associations]
symbol:Rbm46 "RNA binding motif protein 46" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1560205 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
CTD:166863 OrthoDB:EOG4FR0RW OMA:YPGTKLT IPI:IPI00368354
RefSeq:NP_001129189.1 UniGene:Rn.145040 ProteinModelPortal:D3ZAE2
Ensembl:ENSRNOT00000035846 GeneID:310548 KEGG:rno:310548
UCSC:RGD:1560205 NextBio:662134 Uniprot:D3ZAE2
Length = 533
Score = 193 (73.0 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 62/202 (30%), Positives = 102/202 (50%)
Query: 31 QKRGFSGRGGPSPDLVDGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK 87
Q+ G GGP P +G ++FVG +P+ E+++ P+FE G + E L+ +
Sbjct: 38 QENGQRKFGGPPPGW-EGPPPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF 96
Query: 88 KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFV 147
+G+ +G F+ Y T EEA AIR L+N PG + V D R LF+
Sbjct: 97 -SGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSL-DNCR---------LFI 145
Query: 148 GSLNKQATEKEV-EEIFSPYGRVEDV--YLMRDELKQSRGCGFVKY-SHRDMALAAINAL 203
G++ K+ ++E+ +E+ V DV Y + ++RG FV+Y SHR A+A +
Sbjct: 146 GAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLI 205
Query: 204 NGIYTMRGCDQPLTVRFADPKR 225
G + + G + V +ADP++
Sbjct: 206 PGTFQLWG--HTIQVDWADPEK 225
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 192 (72.6 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 52/178 (29%), Positives = 92/178 (51%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
VD +S L + +P+ + ++ LF G + +++D KTG G F+ Y T +
Sbjct: 87 VDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESD 146
Query: 106 ADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSP 165
++ AI+ L+ + ++V YA + + + L+V +L++ + ++ IFSP
Sbjct: 147 SEDAIQKLNGFYVRNKR---LKVSYARPGGQSIK--DTNLYVINLSRNINDDMLDRIFSP 201
Query: 166 YGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFAD 222
YG + ++RD+L + RG FV+Y+ R+ A AI ALN G QP+ VR A+
Sbjct: 202 YGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALNNTVP-EGGSQPIWVRLAE 258
Score = 140 (54.3 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 32/99 (32%), Positives = 59/99 (59%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L+V ++ + ++ + +F +G +++ +++DK TG+ +G F++Y EEA AI+AL
Sbjct: 181 LYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKAL 240
Query: 114 HNQHTLP-GGVGPIQVRYADGERERLGAVEYKLFVGSLN 151
+N T+P GG PI VR A+ E + A ++ +G N
Sbjct: 241 NN--TVPEGGSQPIWVRLAE-EHGKAKAAQFMAQIGGGN 276
>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
symbol:syncripl "synaptotagmin binding,
cytoplasmic RNA interacting protein, like" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
Uniprot:Q802X5
Length = 560
Score = 193 (73.0 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 58/199 (29%), Positives = 100/199 (50%)
Query: 39 GGPSPDL----VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
GGP P V + ++FVG +P+ E+++ PLFE+ G + ++ L+ D +G +G
Sbjct: 146 GGPPPGSTHAGVQPTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRG 205
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQA 154
F+ + T E A +A++ +N PG + + A+ +LFVGS+ K
Sbjct: 206 YAFVTFCTKEAAQKAVKLCNNNEIRPGKHIGVCISVANN----------RLFVGSIPKSK 255
Query: 155 TEKEVEEIFSPYGR-VEDVYLMR--DELKQSRGCGFVKYS-HRDMALAAINALNGIYTMR 210
T+ ++ E F+ + DV L D+ K++RG F+ Y H+ A A ++G +
Sbjct: 256 TKDQIVEEFAKVTEGLNDVILYHQPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVW 315
Query: 211 GCDQPLTVRFADP-KRPRP 228
G +TV +ADP + P P
Sbjct: 316 G--NVVTVEWADPIEDPDP 332
Score = 136 (52.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 53/179 (29%), Positives = 88/179 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLF----EEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK+ ++ I F E +VI DKK + +G CF+ Y + A +
Sbjct: 245 RLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYHQPDDKK--KNRGFCFLGYEDHKTAAQ 302
Query: 109 AIRALHNQHTLPGGVGPIQVRYADG----ERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164
A R L + G + V +AD + E + V+ LFV +L TE+ +E+ F
Sbjct: 303 ARRRLMSGKVKVWG-NVVTVEWADPIEDPDPEVMAKVKV-LFVRNLASTVTEELLEKTFC 360
Query: 165 PYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
+G++E V ++D F+ + RD A+ A+ L+G + G +P+ + FA P
Sbjct: 361 QFGKLERVKKLKDY-------AFIHFEERDGAVKALAELHG-KDLEG--EPIEIVFAKP 409
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 171 (65.3 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 54/188 (28%), Positives = 96/188 (51%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
D + A +++G++ + + + L + G V+ + + +D+ G F ++ ++
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 107 DRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY 166
+ A + L NQ L G PI+V A +R + LFVG+L+ E+ + + FS
Sbjct: 66 EYACQIL-NQVKLFGK--PIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSAL 122
Query: 167 GR-VEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---D 222
G+ V+ + RDE +S+G GFV Y + A AAI A+N + M ++P+TV +A +
Sbjct: 123 GQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLM---NKPITVSYAFKRE 179
Query: 223 PKRPRPGD 230
K R GD
Sbjct: 180 GKGERHGD 187
Score = 113 (44.8 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 38/121 (31%), Positives = 59/121 (48%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A LFVG++ E + F G +++ + + G+ +G F+ Y + E AD AI
Sbjct: 99 ANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIE 158
Query: 112 ALHNQHTLPGGVGPIQVRYA---DGERERLGAV-EYKLFVGSL-NKQAT--EKEVEEIFS 164
A++NQ + PI V YA +G+ ER G + E KL + NK A + + FS
Sbjct: 159 AMNNQFLMNK---PITVSYAFKREGKGERHGDIAERKLAAAAKKNKVAVTPQSTLPPGFS 215
Query: 165 P 165
P
Sbjct: 216 P 216
Score = 58 (25.5 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 280 PLSNPGIRGF--GNQLP--PRSGDLGMPLNPGGPADVPLP--GLAVSSTSSA 325
PLS P + F P P + +P+ PGG VP P G+ ++S S A
Sbjct: 253 PLSIPNVLPFTAAQHFPGMPAMPMMNVPMGPGGAPLVPPPPPGMVMASPSPA 304
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 182 (69.1 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 50/166 (30%), Positives = 88/166 (53%)
Query: 64 REEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123
R D+ F G V +V +I D+ + + +G ++++ + AI L Q L GV
Sbjct: 8 RPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL--GV 64
Query: 124 GPIQVRYADGERERLGAVE----------YKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
PI V+ + E+ RL A+ +L+VGSL+ TE + IF P+G+++++
Sbjct: 65 -PIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIV 123
Query: 174 LMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218
LM+D + +S+G GF+ +S + A A+ LNG + + G +P+ V
Sbjct: 124 LMKDSDTGRSKGYGFITFSDSECARRALEQLNG-FELAG--RPMRV 166
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 185 (70.2 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 47/175 (26%), Positives = 84/175 (48%)
Query: 38 RGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCF 97
RG D + F KLF+G + EE +R +E+ G + + +++D + + +G F
Sbjct: 3 RGDRESDWREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGF 62
Query: 98 IKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGA--VEYKLFVGSLNKQAT 155
+ +++ E D A+ A HT+ G V + A E + GA KLFVG + +
Sbjct: 63 VTFSSMAEVDAAMAA--RPHTIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTE 120
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRD----MALAAINALNG 205
E + + F YG+++ + ++ D + RG GFV + D + L + +NG
Sbjct: 121 EHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTING 175
Score = 42 (19.8 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 291 NQLPPRSGDLGMPLNPGGP 309
N P +SG+ G N GGP
Sbjct: 308 NYGPMKSGNFGGSRNMGGP 326
Score = 40 (19.1 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 275 PRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGG 308
P N GP+ + G N P G P GG
Sbjct: 306 PSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGG 339
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 181 (68.8 bits), Expect = 8.7e-12, P = 8.7e-12
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHD 157
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 184 (69.8 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 54/174 (31%), Positives = 92/174 (52%)
Query: 34 GFSGRGGPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQ 93
G SG G SPD G K+++ ++ ++ + + F GN++ + KD+ G +
Sbjct: 102 GGSG-GNSSPD--SG----KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDED-GNSR 153
Query: 94 GCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQ-VRYADGERERLGAVEYK-LFVGSLN 151
G F+ + + E A AI ++ V ++ + D E+E+ A +K L+V +L+
Sbjct: 154 GYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEK--ATHFKNLYVKNLS 211
Query: 152 KQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205
++ TE+ + E+F PYGR+ LM DE +SR GFV Y + ALAA+ L+G
Sbjct: 212 EEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHG 265
>RGD|628862 [details] [associations]
symbol:Rbm45 "RNA binding motif protein 45" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm"
evidence=IEA;ISO;ISS] [GO:0007399 "nervous system development"
evidence=IEP] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:628862 GO:GO:0005634 GO:GO:0005737 GO:GO:0007399
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828 HOVERGEN:HBG051404
OrthoDB:EOG43R3MJ EMBL:AB036990 IPI:IPI00190978 RefSeq:NP_695218.1
UniGene:Rn.204106 ProteinModelPortal:Q8CFD1 STRING:Q8CFD1
PhosphoSite:Q8CFD1 PRIDE:Q8CFD1 GeneID:266631 KEGG:rno:266631
UCSC:RGD:628862 InParanoid:Q8CFD1 NextBio:624456
Genevestigator:Q8CFD1 GermOnline:ENSRNOG00000010595 Uniprot:Q8CFD1
Length = 476
Score = 189 (71.6 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 55/196 (28%), Positives = 97/196 (49%)
Query: 37 GRGG--PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
G GG P D +D +++F+ + K E +R F G++ ++ +++DK T + +G
Sbjct: 9 GSGGFRPGVDSLDEPPNSRIFL-VISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKG 67
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD----GERERLGAVEY-KLFVGS 149
F+K+A S +A RA+ +H Q P PI+V A G + E ++FV
Sbjct: 68 IAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-M 126
Query: 150 LNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYT 208
+ K TE+++ E F YG +E ++++++ +S+G G+V+Y A AI
Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAIE------- 179
Query: 209 MRGCDQPLTVRFADPK 224
CD+ A+PK
Sbjct: 180 --NCDRSFRALLAEPK 193
Score = 111 (44.1 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 30/101 (29%), Positives = 53/101 (52%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
V+ ++FV +PK+ EED+R F+ +G++ ++IK+K TG+ +G +++Y +
Sbjct: 115 VEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQ 173
Query: 106 A-------DRAIRALHNQHTLPGGVGPIQVRYADGERERLG 139
A DR+ RAL + P Q Y+ +E LG
Sbjct: 174 AAQAIENCDRSFRALLAEPKNKVLESPEQDYYSSVRQETLG 214
Score = 72 (30.4 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 28/86 (32%), Positives = 42/86 (48%)
Query: 141 VEYKLFVGSLNKQATEKEV-EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAA 199
V+ +LF+ N +V E+IF +G + +VYL+ + G+VKY+ R A A
Sbjct: 390 VKERLFI-VFNPHPLPLDVLEDIFCRFGNLIEVYLV-----SGKNVGYVKYADRMSANDA 443
Query: 200 INALNGIYTMRGCDQPLTVRFADPKR 225
I L+G + G L V AD R
Sbjct: 444 ITTLHG-KILNGVR--LKVMLADSPR 466
>UNIPROTKB|Q8CFD1 [details] [associations]
symbol:Rbm45 "RNA-binding protein 45" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:628862 GO:GO:0005634 GO:GO:0005737 GO:GO:0007399
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828 HOVERGEN:HBG051404
OrthoDB:EOG43R3MJ EMBL:AB036990 IPI:IPI00190978 RefSeq:NP_695218.1
UniGene:Rn.204106 ProteinModelPortal:Q8CFD1 STRING:Q8CFD1
PhosphoSite:Q8CFD1 PRIDE:Q8CFD1 GeneID:266631 KEGG:rno:266631
UCSC:RGD:628862 InParanoid:Q8CFD1 NextBio:624456
Genevestigator:Q8CFD1 GermOnline:ENSRNOG00000010595 Uniprot:Q8CFD1
Length = 476
Score = 189 (71.6 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 55/196 (28%), Positives = 97/196 (49%)
Query: 37 GRGG--PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
G GG P D +D +++F+ + K E +R F G++ ++ +++DK T + +G
Sbjct: 9 GSGGFRPGVDSLDEPPNSRIFL-VISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKG 67
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD----GERERLGAVEY-KLFVGS 149
F+K+A S +A RA+ +H Q P PI+V A G + E ++FV
Sbjct: 68 IAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-M 126
Query: 150 LNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYT 208
+ K TE+++ E F YG +E ++++++ +S+G G+V+Y A AI
Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAIE------- 179
Query: 209 MRGCDQPLTVRFADPK 224
CD+ A+PK
Sbjct: 180 --NCDRSFRALLAEPK 193
Score = 111 (44.1 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 30/101 (29%), Positives = 53/101 (52%)
Query: 46 VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEE 105
V+ ++FV +PK+ EED+R F+ +G++ ++IK+K TG+ +G +++Y +
Sbjct: 115 VEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQ 173
Query: 106 A-------DRAIRALHNQHTLPGGVGPIQVRYADGERERLG 139
A DR+ RAL + P Q Y+ +E LG
Sbjct: 174 AAQAIENCDRSFRALLAEPKNKVLESPEQDYYSSVRQETLG 214
Score = 72 (30.4 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 28/86 (32%), Positives = 42/86 (48%)
Query: 141 VEYKLFVGSLNKQATEKEV-EEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAA 199
V+ +LF+ N +V E+IF +G + +VYL+ + G+VKY+ R A A
Sbjct: 390 VKERLFI-VFNPHPLPLDVLEDIFCRFGNLIEVYLV-----SGKNVGYVKYADRMSANDA 443
Query: 200 INALNGIYTMRGCDQPLTVRFADPKR 225
I L+G + G L V AD R
Sbjct: 444 ITTLHG-KILNGVR--LKVMLADSPR 466
>UNIPROTKB|Q8IUH3 [details] [associations]
symbol:RBM45 "RNA-binding protein 45" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0007399 "nervous system development"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AB036991 GO:GO:0005634
GO:GO:0005737 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AF526533 EMBL:BC066549
IPI:IPI00216750 IPI:IPI00552178 IPI:IPI00789303 RefSeq:NP_694453.2
UniGene:Hs.377257 ProteinModelPortal:Q8IUH3 SMR:Q8IUH3
IntAct:Q8IUH3 STRING:Q8IUH3 PhosphoSite:Q8IUH3 DMDM:59797947
PaxDb:Q8IUH3 PRIDE:Q8IUH3 DNASU:129831 Ensembl:ENST00000286070
GeneID:129831 KEGG:hsa:129831 UCSC:uc002ulv.3 CTD:129831
GeneCards:GC02P178977 HGNC:HGNC:24468 HPA:HPA020448 MIM:608888
neXtProt:NX_Q8IUH3 PharmGKB:PA162400809 eggNOG:NOG145324
HOGENOM:HOG000231828 HOVERGEN:HBG051404 InParanoid:Q8IUH3
OMA:DIWVVKD ChiTaRS:RBM45 GenomeRNAi:129831 NextBio:82648
Bgee:Q8IUH3 CleanEx:HS_RBM45 Genevestigator:Q8IUH3
GermOnline:ENSG00000155636 Uniprot:Q8IUH3
Length = 476
Score = 189 (71.6 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 56/200 (28%), Positives = 98/200 (49%)
Query: 34 GFSGRGG---PSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTG 90
G S GG P D +D +++F+ + K E +R F G++ ++ +++DK T
Sbjct: 5 GSSASGGGFRPGVDSLDEPPNSRIFL-VISKYTPESVLRERFSPFGDIQDIWVVRDKHTK 63
Query: 91 QQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD----GERERLGAVEY-KL 145
+ +G F+K+A S +A RA+ +H Q P PI+V A G + E ++
Sbjct: 64 ESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRI 123
Query: 146 FVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALN 204
FV + K TE+++ E F YG +E ++++++ +S+G G+V+Y A AI
Sbjct: 124 FV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIE--- 179
Query: 205 GIYTMRGCDQPLTVRFADPK 224
CD+ A+PK
Sbjct: 180 ------NCDRSFRAILAEPK 193
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 186 (70.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 50/176 (28%), Positives = 90/176 (51%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K F+G +P+ + I FE++G V V + +D +T + +G F+ A+ +R +R
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILR- 173
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
+ H L G + VR + ++ K+FVG LN T+ +E FS +G ++ V
Sbjct: 174 --DTHELNGK--RVDVREENNTTP--SDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVV 227
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAI-NALNGIYTMRGCDQPLTVRFADPKRPR 227
++ D +SR GFV +S+ + + + + IY D+ + VR A+PK+P+
Sbjct: 228 QIVLDSSGRSRCFGFVVFSNENSVAKVLKHKRHKIY-----DKMVEVRKAEPKKPK 278
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 186 (70.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 50/176 (28%), Positives = 90/176 (51%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K F+G +P+ + I FE++G V V + +D +T + +G F+ A+ +R +R
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILR- 173
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVEDV 172
+ H L G + VR + ++ K+FVG LN T+ +E FS +G ++ V
Sbjct: 174 --DTHELNGK--RVDVREENNTTP--SDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVV 227
Query: 173 YLMRDELKQSRGCGFVKYSHRDMALAAI-NALNGIYTMRGCDQPLTVRFADPKRPR 227
++ D +SR GFV +S+ + + + + IY D+ + VR A+PK+P+
Sbjct: 228 QIVLDSSGRSRCFGFVVFSNENSVAKVLKHKRHKIY-----DKMVEVRKAEPKKPK 278
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 178 (67.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 46/155 (29%), Positives = 75/155 (48%)
Query: 49 SSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADR 108
++ KLFVG + + +E +R F ++G V++ ++KDK T Q +G F+K+
Sbjct: 52 AALRKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 111
Query: 109 AIRALHNQHTLPG-GVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYG 167
+ + HTL G + P Q G R + K+FVG + E E+ E F +G
Sbjct: 112 VLAS--RPHTLDGRNIDPKQ----KGPRSD-NSKSNKIFVGGIPHNCGETELREYFKKFG 164
Query: 168 RVEDVYLMRDELKQS-RGCGFVKYSHRDMALAAIN 201
V +V ++ D KQ RG GF+ + A+N
Sbjct: 165 VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 199
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 196 (74.1 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 60/193 (31%), Positives = 94/193 (48%)
Query: 39 GGPSPDL---VDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGC 95
GGP P V G+ ++F G +PK E+++ PLFE G + ++ L+ D TG +G
Sbjct: 149 GGPPPHWEGNVPGNG-CEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGY 207
Query: 96 CFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQAT 155
F+ + E A A+R L N PG I + + +LFVG++ K
Sbjct: 208 AFVTFTNREAAVNAVRQLDNHEIKPGKCLKINISVPN----------LRLFVGNIPKSKG 257
Query: 156 EKEVEEIFSPY--GRVEDV-YLMRDELKQSRGCGFVKY-SHRDMALAAINALNGIYTMRG 211
+ E+ E F G E + Y D+ K++RG F++Y SH+ +LA G + G
Sbjct: 258 KDEILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWG 317
Query: 212 CDQPLTVRFADPK 224
CD + V +ADP+
Sbjct: 318 CD--IIVDWADPQ 328
Score = 142 (55.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 48/161 (29%), Positives = 82/161 (50%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVG++PK+ +++I F + + EV + DKK + +G CF++Y + + A
Sbjct: 246 RLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIYSSPDDKK--KNRGFCFLEYESHKAASL 303
Query: 109 AIRALHNQHTLPGGVGPIQVRYADGERE----RLGAVEYKLFVGSLNKQATEKEVEEIFS 164
A R L G I V +AD + E + V+ L+V +L + +E +++E F
Sbjct: 304 AKRRLGTGRIKVWGCDII-VDWADPQEEPDEQTMSKVKV-LYVRNLTQDVSEDKLKEQFE 361
Query: 165 PYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205
YG+VE V ++D F+ + RD A+ A+ LNG
Sbjct: 362 QYGKVERVKKIKDY-------AFIHFEDRDSAVEAMRGLNG 395
Score = 41 (19.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 283 NPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSA 325
N G G G SG +PL+ GG + P+ S+ SA
Sbjct: 514 NGGGGGSGGGGGSVSGGTVLPLSAGGSQNSPMASGQRSARGSA 556
Score = 38 (18.4 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 663 GYTQLPPVAAGSVNNP 678
G T LP A GS N+P
Sbjct: 529 GGTVLPLSAGGSQNSP 544
>ZFIN|ZDB-GENE-061013-298 [details] [associations]
symbol:rbm46 "RNA binding motif protein 46"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
Uniprot:Q08BH5
Length = 510
Score = 189 (71.6 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 62/203 (30%), Positives = 104/203 (51%)
Query: 31 QKRGFSGRGGPSPDLVDGSSFAK---LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK 87
Q+ G GGP P +G + +FVG +P+ E+++ P+FE+ G++ E L+ +
Sbjct: 22 QENGQRKFGGPPPGW-EGPPPPRGREVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEF 80
Query: 88 KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFV 147
+G+ +G F+ Y T E+A RAI+ L N PG + V D R LF+
Sbjct: 81 -SGENRGYAFVMYTTREKAQRAIQLLDNYEIRPGKFIGVCVSL-DNCR---------LFI 129
Query: 148 GSLNKQATEKEV-EEIFSPYGRVEDVYLMR---DELKQSRGCGFVKY-SHRDMALAAINA 202
GS+ K ++E+ EE+ V DV + D +K +RG FV+Y SH+ A+A
Sbjct: 130 GSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDRMK-NRGFAFVEYESHKAAAMARRKL 188
Query: 203 LNGIYTMRGCDQPLTVRFADPKR 225
+ G + + G + V +A+P++
Sbjct: 189 IPGTFQLWG--HTIQVDWAEPEK 209
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 185 (70.2 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 50/182 (27%), Positives = 90/182 (49%)
Query: 47 DGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEA 106
DG+S K+F+G + K F ++G + + +++D+ TGQ +G FI +A
Sbjct: 14 DGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73
Query: 107 DRAIRALHNQHTLPGGVGPIQ--VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFS 164
D+ I + H + G I+ + G + K+FVG + TE E+++ F+
Sbjct: 74 DKVIE---DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFA 130
Query: 165 PYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADP 223
YG V + ++RD E +SRG GFV + ++ ++ N I M D + ++ A+P
Sbjct: 131 KYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMI-DM--ADTQVEIKKAEP 187
Query: 224 KR 225
K+
Sbjct: 188 KK 189
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 125 (49.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + K EE ++ F +G V+E + K+K TG+ +G F+++A + D ++A
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAN--DCD-VVKA 63
Query: 113 LHNQHTLPGGVGPIQVRYADGERE 136
L + H + G P+ VR A + E
Sbjct: 64 LRDTHFILGK--PVDVRKAIRKHE 85
Score = 107 (42.7 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHRD 194
K+FVG L+ TE+E + F +GR DV +M D + + RG GFV Y D
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSED 172
>ZFIN|ZDB-GENE-070912-150 [details] [associations]
symbol:si:ch211-168n8.1 "si:ch211-168n8.1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070912-150 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:CT027714 IPI:IPI00833044 Ensembl:ENSDART00000122509
Uniprot:E7F1Z5
Length = 187
Score = 166 (63.5 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 150 LNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTM 209
LNKQ TE++V +F PYG +E+ ++R S+GC FVK+S A +AI L+G TM
Sbjct: 2 LNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHTEAQSAIGGLHGSQTM 61
Query: 210 RGCDQPLTVRFADPKRPR 227
G L V+FAD + R
Sbjct: 62 PGASSSLVVKFADTDKER 79
Score = 152 (58.6 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 61 KTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLP 120
K EED+ LFE +G VIE + G +GC F+K++T EA AI LH T+P
Sbjct: 4 KQQTEEDVYRLFEPYG-VIEECTVLRGPDGNSKGCAFVKFSTHTEAQSAIGGLHGSQTMP 62
Query: 121 GGVGPIQVRYADGERER 137
G + V++AD ++ER
Sbjct: 63 GASSSLVVKFADTDKER 79
>UNIPROTKB|F1RZE1 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 OMA:DIWVVKD GeneTree:ENSGT00680000100059
EMBL:CU856244 Ensembl:ENSSSCT00000017417 Uniprot:F1RZE1
Length = 476
Score = 187 (70.9 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 55/196 (28%), Positives = 96/196 (48%)
Query: 36 SGRG-GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
SG G P D +D +++F+ + K E +R F G + ++ +++DK T + +G
Sbjct: 9 SGGGFRPGVDSLDEPPNSRIFL-VISKYTPESVLRERFSPFGEIQDIWVVRDKHTKESKG 67
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD----GERERLGAVEY-KLFVGS 149
F+K+A S +A RA+ +H Q P PI+V A G + E ++FV
Sbjct: 68 IAFVKFARSSQACRAMEEMHGQCLSPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-M 126
Query: 150 LNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYT 208
+ K TE+++ E F YG +E ++++++ +S+G G+V+Y A AI
Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIE------- 179
Query: 209 MRGCDQPLTVRFADPK 224
CD+ A+PK
Sbjct: 180 --NCDRSFRAILAEPK 193
>UNIPROTKB|F1PYP3 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:DIWVVKD
GeneTree:ENSGT00680000100059 EMBL:AAEX03017810
Ensembl:ENSCAFT00000021639 Uniprot:F1PYP3
Length = 480
Score = 187 (70.9 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 55/196 (28%), Positives = 96/196 (48%)
Query: 36 SGRG-GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
SG G P D +D +++F+ + K E +R F G + ++ +++DK T + +G
Sbjct: 9 SGGGFRPGVDSLDEPPNSRIFL-VISKYTPESVLRERFSPFGEIQDIWVVRDKHTKESKG 67
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD----GERERLGAVEY-KLFVGS 149
F+K+A S +A RA+ +H Q P PI+V A G + E ++FV
Sbjct: 68 IAFVKFARSSQACRAMEEMHGQCLSPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-M 126
Query: 150 LNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYT 208
+ K TE+++ E F YG +E ++++++ +S+G G+V+Y A AI
Sbjct: 127 IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIE------- 179
Query: 209 MRGCDQPLTVRFADPK 224
CD+ A+PK
Sbjct: 180 --NCDRSFRAILAEPK 193
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 176 (67.0 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 53/183 (28%), Positives = 95/183 (51%)
Query: 52 AKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIR 111
A ++VG++ + E + + + G V+ + + D+ + QG F+++ T E AD A R
Sbjct: 12 ATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAAR 71
Query: 112 ALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGR-VE 170
AL+ G V I+V A ++++ + +LFV +L+ Q EK + + FS +G+ V
Sbjct: 72 ALNGIRVF-GKV--IRVNKASADKQKTAEIGAELFVNNLDPQVDEKILFDTFSRFGQLVT 128
Query: 171 DVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFA---DPKRPR 227
++RD S+G GFV + + + A + +NG Y + + +TV +A D K R
Sbjct: 129 PPNVVRDANNISKGYGFVNFDSFEASDTARDTMNGQYLL---SKQITVEYAYKKDGKGER 185
Query: 228 PGD 230
GD
Sbjct: 186 HGD 188
Score = 52 (23.4 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 275 PRNMG-PLSNPGIRGFGNQLPPRSGDLGMPLNP-GGPADVPLP-GL 317
P G P G GFG +PP++ G + GG A P P GL
Sbjct: 273 PAGYGAPPPRGGPPGFGGHMPPQAAGPGRHMGMMGGHALPPAPSGL 318
Score = 46 (21.3 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 295 PRSGDLGM-PLNPGGPADVPLPGLAVSSTSSALQQNFCQPESQAP 338
P S G P P GPA P PG ++ + + QP + P
Sbjct: 219 PASTPAGATPATPTGPAAGPPPGFDPAAPNGPIGGAPQQPHAGVP 263
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 181 (68.8 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHD 157
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 181 (68.8 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHD 157
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 177 (67.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 41/140 (29%), Positives = 76/140 (54%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLFVG + +E++ F G++I+ ++K+ ++G+ +G F+ +A + ++
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ- 66
Query: 113 LHNQHTLPGG-VGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
+ HTL G + P ++ + G YK+F+G L TE ++ F+ YG+V +
Sbjct: 67 -NGPHTLDGRTIDPKPCNPRTLQKPKKGG-GYKVFLGGLPSNVTETDLRTFFNRYGKVTE 124
Query: 172 VYLMRD-ELKQSRGCGFVKY 190
V +M D E K+SRG GF+ +
Sbjct: 125 VVIMYDQEKKKSRGFGFLSF 144
Score = 51 (23.0 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 17/66 (25%), Positives = 28/66 (42%)
Query: 268 NAWHPMSPRNMGPLSNPGI-RGFGNQLPPRSGD--LGMPLNPGGPADVPLPGLAVSSTSS 324
N+W+ M P + GP PG G + R+ G P G +P G S++ S
Sbjct: 310 NSWN-MPPNSAGPTGAPGAGAGTATDMYSRAQAWATGGPSTTGPVGGMPRTGPGNSASKS 368
Query: 325 ALQQNF 330
+ ++
Sbjct: 369 GSEYDY 374
Score = 41 (19.5 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 288 GFGNQLPPRSGDLGMPLNPGGP 309
G+GN P G P P GP
Sbjct: 249 GYGNSGPGSYQGWGAPPGPQGP 270
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 181 (68.8 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHD 157
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 175 (66.7 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 45/145 (31%), Positives = 70/145 (48%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+ + +E +R FE G + + +++D T + +G F+ Y T EE D A+ A
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVGS+ + E + E F YG++E
Sbjct: 68 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIE 125
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D Q RG FV + D
Sbjct: 126 VIEIMTDRGSGQKRGFVFVTFDDHD 150
Score = 113 (44.8 bits), Expect = 0.00084, P = 0.00084
Identities = 24/88 (27%), Positives = 48/88 (54%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVGS+ + E +R FE++G + + ++ D+ +GQ++G F+ + + D+ +
Sbjct: 99 KIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIV-- 156
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGA 140
+ HT+ G +VR A ++E A
Sbjct: 157 IQKYHTVNGH--NCEVRKALSKQEMASA 182
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 164 (62.8 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 44/145 (30%), Positives = 70/145 (48%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D R K+FVG + E + + F YG++E
Sbjct: 68 --RPHKVDGRVVEPKRAVSREDSRRPGAHLTVKKIFVG---EDTEEHHLRDYFEQYGKIE 122
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 123 VIEIMTDRGSGKKRGFAFVTFDDHD 147
Score = 111 (44.1 bits), Expect = 0.00080, P = 0.00080
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRD-ELKQSRGCGFVKYSHRDMALAAINA 202
KLF+G L+ + T++ + F +G + D +MRD K+SRG GFV Y+ + AA+NA
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 203 LNGIYTMRGCDQPLTVRFADPKRP 226
R + V D +RP
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSRRP 91
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 181 (68.8 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHD 157
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 181 (68.8 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHD 157
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 181 (68.8 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 50/176 (28%), Positives = 85/176 (48%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTVRFADPKR 225
+ +M D + RG FV + D + + +T++G + VR A PK+
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV--IQKYHTVKGHN--CEVRKALPKQ 184
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 181 (68.8 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHD 157
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 181 (68.8 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHD 157
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 181 (68.8 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHD 157
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 181 (68.8 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHD 157
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 181 (68.8 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHD 157
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 179 (68.1 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 48/155 (30%), Positives = 78/155 (50%)
Query: 54 LFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRAL 113
L+VG + T + + F + G V+ V + +D T + G ++ YAT ++A RA+ L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 114 HNQHTLPGGVGPIQVRYA--DGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
N L G I+V Y+ D + G +F+ +L+K K + E FS +G +
Sbjct: 107 -NFMALNGRA--IRVMYSVRDPSLRKSGVGN--IFIKNLDKSIDHKALHETFSAFGPILS 161
Query: 172 VYLMRDELKQSRGCGFVKYSHRDMALAAINALNGI 206
+ D QS+G GFV+Y + A AI+ LNG+
Sbjct: 162 CKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGM 196
Score = 161 (61.7 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 53/192 (27%), Positives = 93/192 (48%)
Query: 51 FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAI 110
F ++V ++ ++ +E++ +F E G +++D + G+ +G F+ + S++A RA+
Sbjct: 223 FTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAV 281
Query: 111 RALHNQHTLPGG---VGPIQVRYADGERERLGAVEYKL------------FVGSLNKQAT 155
AL N T VG Q + ++ E E E L +V +L++ T
Sbjct: 282 DAL-NGKTFDDKEWFVGKAQKK-SERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVT 339
Query: 156 EKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQP 215
+ ++ E F+P+G + +MRD SRG GFV +S + A AI +NG + +P
Sbjct: 340 DDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVT---KP 396
Query: 216 LTVRFADPKRPR 227
L V A K R
Sbjct: 397 LYVALAQRKEDR 408
Score = 55 (24.4 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 267 QNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPL--NPGGPADVPLPG 316
Q + M P NM P P ++ + PP +G L G PA +P PG
Sbjct: 413 QAQFSQMRPVNMPPAVGPRMQMY----PPGGPPMGQQLFYGQGPPAMIPQPG 460
Score = 53 (23.7 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 23/77 (29%), Positives = 31/77 (40%)
Query: 267 QNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPADVPLPGLAVSSTSSAL 326
Q ++ P M P PG G+ QL P GM PGG P+P +
Sbjct: 444 QQLFYGQGPPAMIP--QPGF-GYQQQLVP-----GM--RPGGS---PMPNFFMPMMQQGQ 490
Query: 327 QQNFCQPESQAPSLGQQ 343
QQ Q + Q P G++
Sbjct: 491 QQQQQQQQQQRPGGGRR 507
Score = 41 (19.5 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 291 NQLP-PRSGDLGMP--LNPGG-------PADVPLPGLAVSSTSSALQQNFCQPESQAPSL 340
N +P P L +P ++ GG P P+P +A+++ + N PE Q L
Sbjct: 539 NTMPGPTQNMLSVPYDVSSGGGVHHRDSPTSQPVPIVALATRLA----N-AAPEQQRTML 593
Query: 341 GQQISPL 347
G+ + PL
Sbjct: 594 GENLYPL 600
Score = 40 (19.1 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 663 GYTQ--LPPVAAGSVNNPTRF----QQGLQAAQDWMWKNKPSG 699
GY Q +P + G P F QQG Q Q + +P G
Sbjct: 462 GYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGG 504
Score = 37 (18.1 bits), Expect = 6.5e-11, Sum P(3) = 6.5e-11
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 332 QPESQAPSLGQQISP 346
QP+ +P + QQ+ P
Sbjct: 512 QPQQPSPMMQQQMHP 526
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 181 (68.8 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHD 157
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 192 (72.6 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 55/181 (30%), Positives = 94/181 (51%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
K+FVG +P+ E+++ PLFE+ G + ++ L+ D +GQ +G FI + E A A++
Sbjct: 128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187
Query: 113 LHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPY--GRVE 170
+ PG + + A+ +LFVGS+ K T++ + E FS G V+
Sbjct: 188 CDSYEIRPGKHLGVCISVANN----------RLFVGSIPKNKTKENILEEFSKVTEGLVD 237
Query: 171 DV-YLMRDELKQSRGCGFVKYS-HRDMALAAINALNGIYTMRGCDQPLTVRFADP-KRPR 227
+ Y D+ K++RG F++Y H+ A A ++G + G +TV +ADP + P
Sbjct: 238 VILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG--NVVTVEWADPVEEPD 295
Query: 228 P 228
P
Sbjct: 296 P 296
Score = 143 (55.4 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 50/160 (31%), Positives = 81/160 (50%)
Query: 53 KLFVGSVPKTAREEDIRPLFEE-HGNVIEVALIK---DKKTGQQQGCCFIKYATSEEADR 108
+LFVGS+PK +E+I F + +++V L DKK + +G CF++Y + A +
Sbjct: 209 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKK--KNRGFCFLEYEDHKSAAQ 266
Query: 109 AIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYK---LFVGSLNKQATEKEVEEIFSP 165
A R L + G + V +AD E V K LFV +L TE+ +E+ FS
Sbjct: 267 ARRRLMSGKVKVWG-NVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 325
Query: 166 YGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205
+G++E V ++D FV + R A+ A++ +NG
Sbjct: 326 FGKLERVKKLKDY-------AFVHFEDRGAAVKAMDEMNG 358
Score = 39 (18.8 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 272 PMSPRNMGPLSNPGIRGFGNQLPPRSGDLGMPLNPGGPA 310
P PR G G G+ + P G GGPA
Sbjct: 474 PPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPA 512
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 180 (68.4 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 43/143 (30%), Positives = 68/143 (47%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + EE +R FE+ G + +++D T + +G F+ YAT EE D A+ A
Sbjct: 15 KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVDAAMNA 74
Query: 113 LHNQHTLPGGVGPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVED 171
H V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --RPHVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 132
Query: 172 VYLMRDELKQSRGCGFVKYSHRD 194
+ +M D +G FV + D
Sbjct: 133 IEIMTDRGSGKKGFAFVTFDDHD 155
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 174 (66.3 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 48/170 (28%), Positives = 81/170 (47%)
Query: 48 GSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEAD 107
G KLFVG + + +E +R F ++G V++ ++KDK T Q +G F+K+
Sbjct: 6 GDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 65
Query: 108 RAIRALHNQHTLPG-----------GVGPIQVRYADGERERLGAVEY----KLFVGSLNK 152
+ + HTL G G+ P + R +G +++ E K+FVG +
Sbjct: 66 TVLAS--RPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPH 123
Query: 153 QATEKEVEEIFSPYGRVEDVYLMRDELKQS-RGCGFVKYSHRDMALAAIN 201
E E++E F+ +G V +V ++ D KQ RG GF+ + A+N
Sbjct: 124 NCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 173
Score = 128 (50.1 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 144 KLFVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDEL-KQSRGCGFVKYSHRDMALAAINA 202
KLFVG L+ T++ + FS YG V D +M+D+ QSRG GFVK+ + + +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 203 LNGIYTMRGCD-QPLTVRFADPKRPRP 228
R D +P T R P+R RP
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRP 97
Score = 48 (22.0 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 24/74 (32%), Positives = 31/74 (41%)
Query: 275 PRNMGP-LSNPGIRGFGNQLPPRSGDL----GMPLNPGGPADVPL-----PGLAVSSTSS 324
P+ P + P G+G PP D G+P PG P PL PG + S
Sbjct: 276 PQGFPPGYATPPPFGYGYGPPPPPPDQFVSSGVPPPPGTPGAAPLAFPPPPGQSAQDLSK 335
Query: 325 --ALQQNFCQPESQ 336
+ QQ+F P SQ
Sbjct: 336 PPSGQQDF--PFSQ 347
Score = 43 (20.2 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 262 TDQIPQNAWHPMSPRNMGPLSNPGIRGFGNQLPPRSG 298
T Q PQ W SP+ M + I G+G Q R G
Sbjct: 220 TGQPPQT-WQGYSPQGMWMPTGQTIGGYG-QPAGRGG 254
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 181 (68.8 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHD 157
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 181 (68.8 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHD 157
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 181 (68.8 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 52/166 (31%), Positives = 84/166 (50%)
Query: 64 REEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123
R D+ F G V +V +I D+ + + +G ++++ AI L Q L GV
Sbjct: 8 RPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVL--GV 64
Query: 124 GPIQVRYADGERERLGAVE----------YKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
PI V+ + E+ R A+ +L+VGSL+ TE + IF P+GR+E +
Sbjct: 65 -PIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQ 123
Query: 174 LMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218
LM D E +S+G GF+ +S + A A+ LNG + + G +P+ V
Sbjct: 124 LMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAG--RPMKV 166
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 181 (68.8 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 75 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHD 157
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 173 (66.0 bits), Expect = 5.2e-11, P = 5.2e-11
Identities = 54/176 (30%), Positives = 91/176 (51%)
Query: 43 PDLVDGSSFA--KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKY 100
P +D SS A ++++G++P+T E + L EEHG V +V ++ DK +G+ + F
Sbjct: 65 PAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATM 124
Query: 101 ATSEEADRAIRALHNQHTLPGGVGPIQVR---YADG------ERERLGAVE--YKLFVGS 149
+ E+A+ + L N +T+ G + + A + E V+ YK++VG+
Sbjct: 125 KSVEDANAVVEKL-NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGN 183
Query: 150 LNKQATEKEVEEIFSPYGRVEDVYLMR-DELKQSRGCGFVKYSHRDMALAAINALN 204
L K T++ +E +FS G+V + R +S G GFV +S + AAI ALN
Sbjct: 184 LAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN 239
>UNIPROTKB|E1BV69 [details] [associations]
symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YPGTKLT EMBL:AADN02016545 IPI:IPI00595715
ProteinModelPortal:E1BV69 Ensembl:ENSGALT00000015094 Uniprot:E1BV69
Length = 467
Score = 183 (69.5 bits), Expect = 5.3e-11, P = 5.3e-11
Identities = 63/205 (30%), Positives = 104/205 (50%)
Query: 31 QKRGFSGRGGPSPDLVDGSS---FAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK 87
Q+ G GGP P +G ++FVG +P+ E+++ PLFE G + E+ L+ +
Sbjct: 38 QENGQRKFGGPPPGW-EGPPPPRGCEVFVGKIPRNIYEDELVPLFERAGKIYELRLMMEF 96
Query: 88 KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFV 147
+G+ +G F+ Y T E+A AI+ L+N PG R+ G L +LF+
Sbjct: 97 -SGENRGFAFVMYTTKEDAQLAIKILNNYEIRPG-------RFI-GVCISLD--NCRLFI 145
Query: 148 GSLNKQATEKEVEEIFSPYGRVE----DVYLMRD--ELKQSRGCGFVKY-SHRDMALAAI 200
G++ + EK+ EEI R+ DV + D + ++RG FV+Y SHR A+A
Sbjct: 146 GAIPR---EKKKEEILKEMKRITEGVVDVIVCPDATDRTKNRGFAFVEYESHRAAAMARR 202
Query: 201 NALNGIYTMRGCDQPLTVRFADPKR 225
L G + + G + + V +A P++
Sbjct: 203 RLLPGTFQLWG--RAVQVDWACPEK 225
>UNIPROTKB|Q3MHF0 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD GeneTree:ENSGT00680000100059
OrthoDB:EOG43R3MJ EMBL:DAAA02004143 EMBL:BC105262 IPI:IPI00711970
RefSeq:NP_001124225.1 UniGene:Bt.48322 STRING:Q3MHF0
Ensembl:ENSBTAT00000008111 GeneID:535331 KEGG:bta:535331
InParanoid:Q3MHF0 NextBio:20876704 Uniprot:Q3MHF0
Length = 474
Score = 183 (69.5 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 54/196 (27%), Positives = 96/196 (48%)
Query: 36 SGRG-GPSPDLVDGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQG 94
SG G P D +D +++F+ + K E +R F G + ++ +++DK T + +G
Sbjct: 9 SGGGFRPGVDNLDEPPNSRIFL-VISKYTSESVLRERFSPFGEIQDIWVVRDKHTKESKG 67
Query: 95 CCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYAD----GERERLGAVEY-KLFVGS 149
F+K+A S +A RA+ +H Q P PI+V A G + E ++FV
Sbjct: 68 IAFVKFARSSQACRAMEEMHGQCLTPSDTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-M 126
Query: 150 LNKQATEKEVEEIFSPYGRVEDVYLMRDELK-QSRGCGFVKYSHRDMALAAINALNGIYT 208
+ K TE+++ E F +G +E ++++++ +S+G G+V+Y A AI
Sbjct: 127 IPKSYTEEDLREKFKVFGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIE------- 179
Query: 209 MRGCDQPLTVRFADPK 224
CD+ A+PK
Sbjct: 180 --NCDRSYRAILAEPK 193
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 181 (68.8 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 44/145 (30%), Positives = 72/145 (49%)
Query: 53 KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRA 112
KLF+G + +E +R FE+ G + + +++D T + +G F+ YAT EE D A+ A
Sbjct: 36 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 95
Query: 113 LHNQHTLPGGV-GPIQ-VRYADGERERLGAVEYKLFVGSLNKQATEKEVEEIFSPYGRVE 170
H + G V P + V D +R K+FVG + + E + + F YG++E
Sbjct: 96 --RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 153
Query: 171 DVYLMRDELK-QSRGCGFVKYSHRD 194
+ +M D + RG FV + D
Sbjct: 154 VIEIMTDRGSGKKRGFAFVTFDDHD 178
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 178 (67.7 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 57/199 (28%), Positives = 91/199 (45%)
Query: 30 GQKRGFSGRG-GPSPDLVDGSSFA-KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDK 87
G+ G +G G G D A K+FVG + ++D++ F + G V++ + D
Sbjct: 21 GEAAGENGAGEGLQIDASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDS 80
Query: 88 KTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGERERLGAVE--YKL 145
TG+ +G FI + S+ DR ++ +H L G R D +R E K+
Sbjct: 81 NTGRSRGFGFILFKESDSVDRVLQ--QKEHRLDG-------RQIDPKRAMAIKKEPVKKI 131
Query: 146 FVGSLNKQATEKEVEEIFSPYGRVEDVYLMRDELKQSRGCGFVKYSHRDMALAAINALNG 205
FVG LN + TE+++ E F +G +E + L D K S+ GFV + ++ A L
Sbjct: 132 FVGGLNPETTEEKIREYFGSFGEIETIELPTDP-KTSKRRGFVFITFKE-EFAVKKILEK 189
Query: 206 IYTMRGCDQPLTVRFADPK 224
Y C ++ A PK
Sbjct: 190 KYH-NVCGSKCEIKIAQPK 207
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 185 (70.2 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 54/168 (32%), Positives = 85/168 (50%)
Query: 32 KRGFSGRGGPSPDLVDGSSFA--KLFVGSVPKTAREEDIRPLFEEHGNVIEVALIKDKKT 89
K G SGR PS GS A KLFVG + + ++ F G V +V ++KD T
Sbjct: 181 KSGSSGRSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVT 240
Query: 90 GQQQGCCFIKYATSEEADRAIRALHNQHTLPGGVGPIQVRYADGE-RERLGAVEYKLFVG 148
+ +G FI + ++ ++ HTL G I ++A + R R K+FVG
Sbjct: 241 QRSRGFGFITFQEPCTVEKVLKV--PIHTLDGK--KIDPKHATPKNRPRQANKTKKIFVG 296
Query: 149 SLNKQATEKEVEEIFSPYGRVED-VYLMRDELKQSRGCGFVKYSHRDM 195
+++ + +EV+ FS +G VE+ V LM + K+ RG GFV + + D+
Sbjct: 297 GVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDV 344
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 182 (69.1 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 50/166 (30%), Positives = 88/166 (53%)
Query: 64 REEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123
R D+ F G V +V +I D+ + + +G ++++ + AI L Q L GV
Sbjct: 178 RPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL--GV 234
Query: 124 GPIQVRYADGERERLGAVE----------YKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
PI V+ + E+ RL A+ +L+VGSL+ TE + IF P+G+++++
Sbjct: 235 -PIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIV 293
Query: 174 LMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218
LM+D + +S+G GF+ +S + A A+ LNG + + G +P+ V
Sbjct: 294 LMKDSDTGRSKGYGFITFSDSECARRALEQLNG-FELAG--RPMRV 336
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 182 (69.1 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 50/166 (30%), Positives = 88/166 (53%)
Query: 64 REEDIRPLFEEHGNVIEVALIKDKKTGQQQGCCFIKYATSEEADRAIRALHNQHTLPGGV 123
R D+ F G V +V +I D+ + + +G ++++ + AI L Q L GV
Sbjct: 179 RPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL--GV 235
Query: 124 GPIQVRYADGERERLGAVE----------YKLFVGSLNKQATEKEVEEIFSPYGRVEDVY 173
PI V+ + E+ RL A+ +L+VGSL+ TE + IF P+G+++++
Sbjct: 236 -PIIVQASQAEKNRLAAMANNLQKGSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIV 294
Query: 174 LMRD-ELKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLTV 218
LM+D + +S+G GF+ +S + A A+ LNG + + G +P+ V
Sbjct: 295 LMKDSDTGRSKGYGFITFSDSECARRALEQLNG-FELAG--RPMRV 337
WARNING: HSPs involving 824 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 700 518 0.00089 119 3 11 23 0.46 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1074
No. of states in DFA: 619 (66 KB)
Total size of DFA: 306 KB (2156 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 46.89u 0.16s 47.05t Elapsed: 00:00:02
Total cpu time: 46.93u 0.17s 47.10t Elapsed: 00:00:02
Start: Tue May 21 14:34:25 2013 End: Tue May 21 14:34:27 2013
WARNINGS ISSUED: 2